Citrus Sinensis ID: 041215

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130------
Protein Sequence
VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAENHNPATAKTYIYLHLPQETEVKGKPRAGTSGRK
Secondary Structure (PSIPRED)
cccccEEEEEEEEccccccccEEEEEEcccccEEEEEEEEEEccccEEEEEcccccEEEEEcccccEEEEcccccccccEEEEcccccEEEEEEccccccccccccccccccEEEEEccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEcEEEEEEEEccccccccEEEEEccccccEEEEcEEEEcccccEEEEcccccEEEEEcccHHHHHcccccccccEEEEEEcccccEEEEEEEEccccccccccccccccEEEEEEccHHHccccccccccccc
Coil and Loop (DISEMBL)
vgsiegrvgvhhlddsqqsknftfkchrdgseiysvnslnfhpihhtfatagsdgafnfwdkDSKQRLKAMsrcgqpipcstfntdgsiFAYSVCydwskgaenhnpataKTYIYlhlpqetevkgkpragtsgrk
Flexible Loop (DISEMBL)
vgsiegrvgvhhlddsqqsknFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAENHNPATAKTYIylhlpqetevkgkpragtsgrk
Low Complexity Region (SEG)
VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAENHNPATAKTYIYLHLPQETEVKGKPRAGTSGRK
Disordered region (IsUnstruct)
*********************FTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAENHNPATAKTYIYLHL******************
Disordered Region (DISOPRED)
VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAENHNPATAKTYIYLHLPQ****************
Disordered Region (DISEMBL)
VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAENHNPATAKTYIYLHLPQETE*************
Disordered Region (DISPRO)
*GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAENHNPATAKTYIYLHLPQETEV************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAENHNPATAKTYIYLHLPQETEVKGKPRAGTSGRK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	136	2.2.26 [Sep-21-2011]
Q38942	349	Rae1-like protein At1g806	yes	no	1.0	0.389	0.867	2e-69
P41838	352	Poly(A)+ RNA export prote	yes	no	0.955	0.369	0.496	1e-33
Q5FVA9	368	mRNA export factor OS=Xen	yes	no	0.919	0.339	0.496	3e-30
Q7ZWF0	368	mRNA export factor OS=Dan	yes	no	0.919	0.339	0.489	4e-30
Q8C570	368	mRNA export factor OS=Mus	yes	no	0.919	0.339	0.489	1e-29
Q5RF99	368	mRNA export factor OS=Pon	yes	no	0.919	0.339	0.489	1e-29
P78406	368	mRNA export factor OS=Hom	yes	no	0.919	0.339	0.489	1e-29
Q4R6D2	368	mRNA export factor OS=Mac	N/A	no	0.919	0.339	0.489	1e-29
A5GFN6	368	mRNA export factor OS=Sus	yes	no	0.919	0.339	0.489	1e-29
Q5E9A4	368	mRNA export factor OS=Bos	yes	no	0.919	0.339	0.489	1e-29

>sp|Q38942|RAE1L_ARATH Rae1-like protein At1g80670 OS=Arabidopsis thaliana GN=At1g80670 PE=2 SV=2

 Score =  260 bits (665), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 118/136 (86%), Positives = 128/136 (94%)

Query: 1   VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFW 60
           VGSIEGRVGVHHLDDSQQSKNFTFKCHRDG++IYSVNSLNFHP+H TFATAGSDGAFNFW
Sbjct: 214 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGNDIYSVNSLNFHPVHGTFATAGSDGAFNFW 273

Query: 61  DKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAENHNPATAKTYIYLHLPQ 120
           DKDSKQRLKAMSRC QPIPCS+FN DGSI+AY+ CYDWSKGAENHNPATAK+ I+LHLPQ
Sbjct: 274 DKDSKQRLKAMSRCNQPIPCSSFNHDGSIYAYAACYDWSKGAENHNPATAKSSIFLHLPQ 333

Query: 121 ETEVKGKPRAGTSGRK 136
           E+EVK KPR G +GRK
Sbjct: 334 ESEVKAKPRVGATGRK 349

Arabidopsis thaliana (taxid: 3702)

>sp|P41838|RAE1_SCHPO Poly(A)+ RNA export protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rae1 PE=1 SV=1

 Score =  141 bits (355), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 67/135 (49%), Positives = 92/135 (68%), Gaps = 5/135 (3%)

Query: 1   VGSIEGRVGVHHLDDSQQSKNFTFKCHRD----GSEIYSVNSLNFHPIHHTFATAGSDGA 56
           +GS+EGR  + ++D+   S+NF+F+CHR+     +++YSVNS+ FHP + TF+TAGSDG 
Sbjct: 218 IGSVEGRCAIQNIDEKNASQNFSFRCHRNQAGNSADVYSVNSIAFHPQYGTFSTAGSDGT 277

Query: 57  FNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAENHNPATAKTYIYL 116
           F+FWDKDS QRLK+    G  I CSTFN  G IFAY++ YDWSKG   +N A     I L
Sbjct: 278 FSFWDKDSHQRLKSYPNVGGTISCSTFNRTGDIFAYAISYDWSKGYTFNN-AQLPNKIML 336

Query: 117 HLPQETEVKGKPRAG 131
           H   + E+K +P+ G
Sbjct: 337 HPVPQDEIKPRPKKG 351

Required for mitotic cell growth as well as for spore germination. Functions in cell cycle progression through trafficking of proteins required for mitosis. Has a role in the mRNA export process.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q5FVA9|RAE1L_XENTR mRNA export factor OS=Xenopus tropicalis GN=rae1 PE=2 SV=1

 Score =  130 bits (326), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 68/137 (49%), Positives = 89/137 (64%), Gaps = 12/137 (8%)

Query: 1   VGSIEGRVGVHHLDDSQQSK-NFTFKCHRDG-------SEIYSVNSLNFHPIHHTFATAG 52
           +GSIEGRV +H+++    +K NFTFKCHR          +IY+VN + FHP+H T AT G
Sbjct: 233 LGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTTAPQDIYAVNGIAFHPVHGTLATVG 292

Query: 53  SDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAENHNPATAKT 112
           SDG F+FWDKD++ +LK   +  QPI   +FN +G+IFAYS  YDWSKG E +NP   K 
Sbjct: 293 SDGRFSFWDKDARTKLKTSEQLDQPISACSFNHNGNIFAYSSSYDWSKGHEFYNPQ-KKN 351

Query: 113 YIYLHLPQETEVKGKPR 129
           YI+L    E   + KPR
Sbjct: 352 YIFLRNAAE---ELKPR 365

Binds mRNA. May function in nucleocytoplasmic transport and in directly or indirectly attaching cytoplasmic mRNPs to the cytoskeleton.

Xenopus tropicalis (taxid: 8364)

>sp|Q7ZWF0|RAE1L_DANRE mRNA export factor OS=Danio rerio GN=rae1 PE=2 SV=2

 Score =  129 bits (325), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 67/137 (48%), Positives = 90/137 (65%), Gaps = 12/137 (8%)

Query: 1   VGSIEGRVGVHHLDDSQQSK-NFTFKCHRDG-------SEIYSVNSLNFHPIHHTFATAG 52
           +GSIEGRV +H+++    +K NFTFKCHR          +IY+VN+++FHP+H T AT G
Sbjct: 233 LGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTATPQDIYAVNAISFHPVHGTLATVG 292

Query: 53  SDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAENHNPATAKT 112
           SDG F+FWDKD++ +LK   +  QPI    FN +G+IFAY+  YDWSKG E +NP   K 
Sbjct: 293 SDGRFSFWDKDARTKLKTSEQLDQPITACCFNHNGNIFAYASSYDWSKGHEYYNPQ-KKN 351

Query: 113 YIYLHLPQETEVKGKPR 129
           YI+L    E   + KPR
Sbjct: 352 YIFLRNAAE---ELKPR 365

Binds mRNA. May function in nucleocytoplasmic transport and in directly or indirectly attaching cytoplasmic mRNPs to the cytoskeleton.

Danio rerio (taxid: 7955)

>sp|Q8C570|RAE1L_MOUSE mRNA export factor OS=Mus musculus GN=Rae1 PE=1 SV=1

 Score =  128 bits (321), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 67/137 (48%), Positives = 88/137 (64%), Gaps = 12/137 (8%)

Query: 1   VGSIEGRVGVHHLDDSQQSK-NFTFKCHRDG-------SEIYSVNSLNFHPIHHTFATAG 52
           +GSIEGRV +H+++    +K NFTFKCHR          +IY+VN + FHP+H T AT G
Sbjct: 233 LGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVG 292

Query: 53  SDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAENHNPATAKT 112
           SDG F+FWDKD++ +LK   +  QPI    FN +G+IFAY+  YDWSKG E +NP   K 
Sbjct: 293 SDGRFSFWDKDARTKLKTSEQLDQPIAACCFNHNGNIFAYASSYDWSKGHEFYNP-QKKN 351

Query: 113 YIYLHLPQETEVKGKPR 129
           YI+L    E   + KPR
Sbjct: 352 YIFLRNAAE---ELKPR 365

Binds mRNA. May function in nucleocytoplasmic transport and in directly or indirectly attaching cytoplasmic mRNPs to the cytoskeleton.

Mus musculus (taxid: 10090)

>sp|Q5RF99|RAEL1_PONAB mRNA export factor OS=Pongo abelii GN=RAE1 PE=2 SV=1

 Score =  128 bits (321), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 67/137 (48%), Positives = 88/137 (64%), Gaps = 12/137 (8%)

Query: 1   VGSIEGRVGVHHLDDSQQSK-NFTFKCHRDG-------SEIYSVNSLNFHPIHHTFATAG 52
           +GSIEGRV +H+++    +K NFTFKCHR          +IY+VN + FHP+H T AT G
Sbjct: 233 LGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVG 292

Query: 53  SDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAENHNPATAKT 112
           SDG F+FWDKD++ +LK   +  QPI    FN +G+IFAY+  YDWSKG E +NP   K 
Sbjct: 293 SDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQ-KKN 351

Query: 113 YIYLHLPQETEVKGKPR 129
           YI+L    E   + KPR
Sbjct: 352 YIFLRNAAE---ELKPR 365

Binds mRNA. May function in nucleocytoplasmic transport and in directly or indirectly attaching cytoplasmic mRNPs to the cytoskeleton.

Pongo abelii (taxid: 9601)

>sp|P78406|RAE1L_HUMAN mRNA export factor OS=Homo sapiens GN=RAE1 PE=1 SV=1

 Score =  128 bits (321), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 67/137 (48%), Positives = 88/137 (64%), Gaps = 12/137 (8%)

Query: 1   VGSIEGRVGVHHLDDSQQSK-NFTFKCHRDG-------SEIYSVNSLNFHPIHHTFATAG 52
           +GSIEGRV +H+++    +K NFTFKCHR          +IY+VN + FHP+H T AT G
Sbjct: 233 LGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVG 292

Query: 53  SDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAENHNPATAKT 112
           SDG F+FWDKD++ +LK   +  QPI    FN +G+IFAY+  YDWSKG E +NP   K 
Sbjct: 293 SDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQ-KKN 351

Query: 113 YIYLHLPQETEVKGKPR 129
           YI+L    E   + KPR
Sbjct: 352 YIFLRNAAE---ELKPR 365

Binds mRNA. May function in nucleocytoplasmic transport and in directly or indirectly attaching cytoplasmic mRNPs to the cytoskeleton.

Homo sapiens (taxid: 9606)

>sp|Q4R6D2|RAE1L_MACFA mRNA export factor OS=Macaca fascicularis GN=RAE1 PE=2 SV=1

 Score =  128 bits (321), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 67/137 (48%), Positives = 88/137 (64%), Gaps = 12/137 (8%)

Query: 1   VGSIEGRVGVHHLDDSQQSK-NFTFKCHRDG-------SEIYSVNSLNFHPIHHTFATAG 52
           +GSIEGRV +H+++    +K NFTFKCHR          +IY+VN + FHP+H T AT G
Sbjct: 233 LGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVG 292

Query: 53  SDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAENHNPATAKT 112
           SDG F+FWDKD++ +LK   +  QPI    FN +G+IFAY+  YDWSKG E +NP   K 
Sbjct: 293 SDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQ-KKN 351

Query: 113 YIYLHLPQETEVKGKPR 129
           YI+L    E   + KPR
Sbjct: 352 YIFLRNAAE---ELKPR 365

Binds mRNA. May function in nucleocytoplasmic transport and in directly or indirectly attaching cytoplasmic mRNPs to the cytoskeleton.

Macaca fascicularis (taxid: 9541)

>sp|A5GFN6|RAEL1_PIG mRNA export factor OS=Sus scrofa GN=RAE1 PE=3 SV=1

 Score =  128 bits (321), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 67/137 (48%), Positives = 88/137 (64%), Gaps = 12/137 (8%)

Query: 1   VGSIEGRVGVHHLDDSQQSK-NFTFKCHRDG-------SEIYSVNSLNFHPIHHTFATAG 52
           +GSIEGRV +H+++    +K NFTFKCHR          +IY+VN + FHP+H T AT G
Sbjct: 233 LGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVG 292

Query: 53  SDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAENHNPATAKT 112
           SDG F+FWDKD++ +LK   +  QPI    FN +G+IFAY+  YDWSKG E +NP   K 
Sbjct: 293 SDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQ-KKN 351

Query: 113 YIYLHLPQETEVKGKPR 129
           YI+L    E   + KPR
Sbjct: 352 YIFLRNAAE---ELKPR 365

Binds mRNA. May function in nucleocytoplasmic transport and in directly or indirectly attaching cytoplasmic mRNPs to the cytoskeleton.

Sus scrofa (taxid: 9823)

>sp|Q5E9A4|RAE1L_BOVIN mRNA export factor OS=Bos taurus GN=RAE1 PE=2 SV=1

 Score =  128 bits (321), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 67/137 (48%), Positives = 88/137 (64%), Gaps = 12/137 (8%)

Query: 1   VGSIEGRVGVHHLDDSQQSK-NFTFKCHRDG-------SEIYSVNSLNFHPIHHTFATAG 52
           +GSIEGRV +H+++    +K NFTFKCHR          +IY+VN + FHP+H T AT G
Sbjct: 233 LGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVG 292

Query: 53  SDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAENHNPATAKT 112
           SDG F+FWDKD++ +LK   +  QPI    FN +G+IFAY+  YDWSKG E +NP   K 
Sbjct: 293 SDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNP-QKKN 351

Query: 113 YIYLHLPQETEVKGKPR 129
           YI+L    E   + KPR
Sbjct: 352 YIFLRNAAE---ELKPR 365

Binds mRNA. May function in nucleocytoplasmic transport and in directly or indirectly attaching cytoplasmic mRNPs to the cytoskeleton.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	136
225447856	350	PREDICTED: rae1-like protein At1g80670 [	1.0	0.388	0.926	3e-72
363806810	347	uncharacterized protein LOC100819240 [Gl	1.0	0.391	0.897	1e-70
255572775	349	plant poly(A)+ RNA export protein, putat	1.0	0.389	0.904	2e-70
109390024	347	RNA export 1 [Nicotiana benthamiana]	1.0	0.391	0.904	6e-70
449447571	344	PREDICTED: rae1-like protein At1g80670-l	1.0	0.395	0.911	8e-70
357445765	351	RNA export [Medicago truncatula] gi|3554	1.0	0.387	0.882	9e-70
363807134	347	uncharacterized protein LOC100780721 [Gl	1.0	0.391	0.882	2e-69
388514275	252	unknown [Medicago truncatula]	1.0	0.539	0.867	3e-69
356525894	347	PREDICTED: uncharacterized protein LOC10	1.0	0.391	0.882	8e-69
356558620	347	PREDICTED: rae1-like protein At1g80670-l	1.0	0.391	0.882	1e-68

>gi|225447856|ref|XP_002271645.1| PREDICTED: rae1-like protein At1g80670 [Vitis vinifera] gi|296081523|emb|CBI20046.3| unnamed protein product [Vitis vinifera]

 Score =  276 bits (705), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 126/136 (92%), Positives = 132/136 (97%)

Query: 1   VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFW 60
           VGSIEGRVGVHHLDD+QQSKNFTFKCHR+G+EIYSVNSLNFHP+HHTFATAGSDGAFNFW
Sbjct: 215 VGSIEGRVGVHHLDDAQQSKNFTFKCHREGNEIYSVNSLNFHPVHHTFATAGSDGAFNFW 274

Query: 61  DKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAENHNPATAKTYIYLHLPQ 120
           DKDSKQRLKAMSRC QPIPCSTFN DGSIFAYSVCYDWSKGAENHNPATAK+YI+LHLPQ
Sbjct: 275 DKDSKQRLKAMSRCSQPIPCSTFNNDGSIFAYSVCYDWSKGAENHNPATAKSYIFLHLPQ 334

Query: 121 ETEVKGKPRAGTSGRK 136
           E EVKGKPR GTSGRK
Sbjct: 335 EAEVKGKPRIGTSGRK 350

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363806810|ref|NP_001242030.1| uncharacterized protein LOC100819240 [Glycine max] gi|255638763|gb|ACU19686.1| unknown [Glycine max]

 Score =  270 bits (691), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 122/136 (89%), Positives = 130/136 (95%)

Query: 1   VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFW 60
           VGSIEGRVGVHHLDD+QQ+KNFTFKCHR+ +EIYSVNSLNFHP+HHTFATAGSDGAFNFW
Sbjct: 212 VGSIEGRVGVHHLDDAQQNKNFTFKCHRENNEIYSVNSLNFHPVHHTFATAGSDGAFNFW 271

Query: 61  DKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAENHNPATAKTYIYLHLPQ 120
           DKDSKQRLKAM RC QPIPCSTFN DGSIFAY+VCYDWSKGAENHNPATAK YIYLHLPQ
Sbjct: 272 DKDSKQRLKAMQRCSQPIPCSTFNNDGSIFAYAVCYDWSKGAENHNPATAKNYIYLHLPQ 331

Query: 121 ETEVKGKPRAGTSGRK 136
           E+EVKGKPRAG +GRK
Sbjct: 332 ESEVKGKPRAGATGRK 347

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572775|ref|XP_002527320.1| plant poly(A)+ RNA export protein, putative [Ricinus communis] gi|223533320|gb|EEF35072.1| plant poly(A)+ RNA export protein, putative [Ricinus communis]

 Score =  270 bits (690), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 123/136 (90%), Positives = 130/136 (95%)

Query: 1   VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFW 60
           VGSIEGRVGVHHLDD+QQ+KNFTFKCHRDG++IYSVN+LNFHP+HHTFATAGSDGAFNFW
Sbjct: 214 VGSIEGRVGVHHLDDAQQNKNFTFKCHRDGNDIYSVNALNFHPVHHTFATAGSDGAFNFW 273

Query: 61  DKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAENHNPATAKTYIYLHLPQ 120
           DKDSKQRLKAMSRC  PIPC TFN DGSIFAYSVCYDWSKGAENHNP TAKTYIYLHLPQ
Sbjct: 274 DKDSKQRLKAMSRCPLPIPCCTFNNDGSIFAYSVCYDWSKGAENHNPQTAKTYIYLHLPQ 333

Query: 121 ETEVKGKPRAGTSGRK 136
           E+EVKGKPR GTSGRK
Sbjct: 334 ESEVKGKPRVGTSGRK 349

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|109390024|gb|ABG29731.1| RNA export 1 [Nicotiana benthamiana]

 Score =  268 bits (685), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 123/136 (90%), Positives = 130/136 (95%)

Query: 1   VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFW 60
           VGSIEGRVGVHHLDDSQQSKNFTFKCHR+G+EIYSVNSLNFHP+H TFATAGSDGAFNFW
Sbjct: 212 VGSIEGRVGVHHLDDSQQSKNFTFKCHREGNEIYSVNSLNFHPVHGTFATAGSDGAFNFW 271

Query: 61  DKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAENHNPATAKTYIYLHLPQ 120
           DKDSKQRLKAMSRC QPIPCS FN DGSI+AY+VCYDWSKGAENHNP+TAKTYIYLH PQ
Sbjct: 272 DKDSKQRLKAMSRCSQPIPCSAFNHDGSIYAYAVCYDWSKGAENHNPSTAKTYIYLHFPQ 331

Query: 121 ETEVKGKPRAGTSGRK 136
           E+EVKGKPR GTSGRK
Sbjct: 332 ESEVKGKPRIGTSGRK 347

Source: Nicotiana benthamiana

Species: Nicotiana benthamiana

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447571|ref|XP_004141541.1| PREDICTED: rae1-like protein At1g80670-like [Cucumis sativus] gi|449481503|ref|XP_004156202.1| PREDICTED: rae1-like protein At1g80670-like [Cucumis sativus]

 Score =  268 bits (684), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 124/136 (91%), Positives = 127/136 (93%)

Query: 1   VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFW 60
           VGSIEGRVGVHHLD+S  +KNFTFKCHRDGSEIYSVNSLNFHP+HHTFATAGSDGAFNFW
Sbjct: 209 VGSIEGRVGVHHLDESMANKNFTFKCHRDGSEIYSVNSLNFHPVHHTFATAGSDGAFNFW 268

Query: 61  DKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAENHNPATAKTYIYLHLPQ 120
           DKDSKQRLKAMSRC QPI CSTFN DGSIFAYSVCYDWSKGAENHNPATAKTYIYLHLPQ
Sbjct: 269 DKDSKQRLKAMSRCSQPISCSTFNQDGSIFAYSVCYDWSKGAENHNPATAKTYIYLHLPQ 328

Query: 121 ETEVKGKPRAGTSGRK 136
           E EVKGKPR G  GRK
Sbjct: 329 EVEVKGKPRVGGGGRK 344

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357445765|ref|XP_003593160.1| RNA export [Medicago truncatula] gi|355482208|gb|AES63411.1| RNA export [Medicago truncatula]

 Score =  267 bits (683), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 120/136 (88%), Positives = 129/136 (94%)

Query: 1   VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFW 60
           VGSIEGRVGVHHLDDSQQ+KNFTFKCHR+G+EIYSVNSLNFHP+HHTFATAGSDGAFNFW
Sbjct: 216 VGSIEGRVGVHHLDDSQQAKNFTFKCHREGNEIYSVNSLNFHPVHHTFATAGSDGAFNFW 275

Query: 61  DKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAENHNPATAKTYIYLHLPQ 120
           DKDSKQRLKAM RC QP+PCS FN DGSIFAYSVCYDWSKGAENHNPATAK YI+LHLPQ
Sbjct: 276 DKDSKQRLKAMLRCSQPVPCSAFNNDGSIFAYSVCYDWSKGAENHNPATAKPYIFLHLPQ 335

Query: 121 ETEVKGKPRAGTSGRK 136
           E+EVKGKPR G +GR+
Sbjct: 336 ESEVKGKPRIGATGRR 351

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807134|ref|NP_001242596.1| uncharacterized protein LOC100780721 [Glycine max] gi|255641855|gb|ACU21196.1| unknown [Glycine max]

 Score =  266 bits (680), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 120/136 (88%), Positives = 128/136 (94%)

Query: 1   VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFW 60
           VGSIEGRVGVHHLDD+QQ+KNFTFKCHR+ +EIYSVNSLNFHP+HHTFATAGSDGAFNFW
Sbjct: 212 VGSIEGRVGVHHLDDAQQNKNFTFKCHRENNEIYSVNSLNFHPVHHTFATAGSDGAFNFW 271

Query: 61  DKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAENHNPATAKTYIYLHLPQ 120
           DKDSKQRLKAM RC QPIPCSTFN DGSIF Y+VCYDWSKGAENHNPATAK YIYLH PQ
Sbjct: 272 DKDSKQRLKAMQRCSQPIPCSTFNNDGSIFVYAVCYDWSKGAENHNPATAKNYIYLHSPQ 331

Query: 121 ETEVKGKPRAGTSGRK 136
           E+EVKGKPRAG +GRK
Sbjct: 332 ESEVKGKPRAGATGRK 347

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388514275|gb|AFK45199.1| unknown [Medicago truncatula]

 Score =  266 bits (679), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 118/136 (86%), Positives = 129/136 (94%)

Query: 1   VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFW 60
           VGSIEGRVGVHHLDD+QQSKNFTFKCHR+ +EIYSVNSLNFHP+HHTFATAGSDGAFNFW
Sbjct: 117 VGSIEGRVGVHHLDDAQQSKNFTFKCHRESNEIYSVNSLNFHPVHHTFATAGSDGAFNFW 176

Query: 61  DKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAENHNPATAKTYIYLHLPQ 120
           DKDSKQRLKAM RC QPIPC TFN DGSI+AY+VCYDWSKGAENHNP TAK YIY+HLPQ
Sbjct: 177 DKDSKQRLKAMQRCSQPIPCGTFNNDGSIYAYAVCYDWSKGAENHNPTTAKNYIYMHLPQ 236

Query: 121 ETEVKGKPRAGTSGRK 136
           E+EVKGKPRAG++GR+
Sbjct: 237 ESEVKGKPRAGSTGRR 252

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525894|ref|XP_003531556.1| PREDICTED: uncharacterized protein LOC100527204 [Glycine max]

 Score =  264 bits (675), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 120/136 (88%), Positives = 128/136 (94%)

Query: 1   VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFW 60
           VGSIEGRVGVHHLDDSQQ KNFTFKCHR+G+EIYSVNSLNFHP+HHTFAT+GSDGAFNFW
Sbjct: 212 VGSIEGRVGVHHLDDSQQGKNFTFKCHREGNEIYSVNSLNFHPVHHTFATSGSDGAFNFW 271

Query: 61  DKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAENHNPATAKTYIYLHLPQ 120
           DKDSKQRLKAM RC  PIPCSTFN DGSIFAYSVCYDWSKGAEN NPATAKTYI+LHLPQ
Sbjct: 272 DKDSKQRLKAMLRCSLPIPCSTFNNDGSIFAYSVCYDWSKGAENSNPATAKTYIFLHLPQ 331

Query: 121 ETEVKGKPRAGTSGRK 136
           E+EV+GKPR G +GRK
Sbjct: 332 ESEVRGKPRIGATGRK 347

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356558620|ref|XP_003547602.1| PREDICTED: rae1-like protein At1g80670-like [Glycine max]

 Score =  263 bits (673), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 120/136 (88%), Positives = 127/136 (93%)

Query: 1   VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFW 60
           VGSIEGRVGVHHLDDSQ  KNFTFKCHR+G+EIYSVNSLNFHP+HHTFAT+GSDGAFNFW
Sbjct: 212 VGSIEGRVGVHHLDDSQHGKNFTFKCHREGNEIYSVNSLNFHPVHHTFATSGSDGAFNFW 271

Query: 61  DKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAENHNPATAKTYIYLHLPQ 120
           DKDSKQRLKAM RC QPIPCSTFN DGSIFAYSVCYDWSKGAEN NPA AKTYI+LHLPQ
Sbjct: 272 DKDSKQRLKAMLRCSQPIPCSTFNNDGSIFAYSVCYDWSKGAENSNPAAAKTYIFLHLPQ 331

Query: 121 ETEVKGKPRAGTSGRK 136
           E+EVKGKPR G +GRK
Sbjct: 332 ESEVKGKPRIGATGRK 347

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	136
TAIR|locus:2025732	349	RAE1 "AT1G80670" [Arabidopsis	1.0	0.389	0.867	2e-65
POMBASE|SPBC16A3.05c	352	rae1 "RNA export factor, nucle	0.948	0.366	0.507	2e-33
UNIPROTKB|G4NDD2	358	MGG_00946 "Poly(A)+ RNA export	0.933	0.354	0.496	5.2e-33
ZFIN|ZDB-GENE-040426-1029	368	rae1 "RAE1 RNA export 1 homolo	0.919	0.339	0.503	6.9e-31
ASPGD|ASPL0000060741	362	sonA [Emericella nidulans (tax	0.948	0.356	0.481	8.8e-31
UNIPROTKB|Q7ZZY7	368	Rae1/Gle2 "Rae1/Gle2" [Xenopus	0.919	0.339	0.510	1.1e-30
UNIPROTKB|E1C7F8	368	Gga.22300 "Uncharacterized pro	0.919	0.339	0.503	2.3e-30
UNIPROTKB|Q5E9A4	368	RAE1 "mRNA export factor" [Bos	0.919	0.339	0.503	2.3e-30
UNIPROTKB|E2RSV2	368	RAE1 "Uncharacterized protein"	0.919	0.339	0.503	2.3e-30
UNIPROTKB|P78406	368	RAE1 "mRNA export factor" [Hom	0.919	0.339	0.503	2.3e-30

TAIR|locus:2025732 RAE1 "AT1G80670" [Arabidopsis thaliana (taxid:3702)]

 Score = 666 (239.5 bits), Expect = 2.0e-65, P = 2.0e-65
 Identities = 118/136 (86%), Positives = 128/136 (94%)

Query:     1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFW 60
             VGSIEGRVGVHHLDDSQQSKNFTFKCHRDG++IYSVNSLNFHP+H TFATAGSDGAFNFW
Sbjct:   214 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGNDIYSVNSLNFHPVHGTFATAGSDGAFNFW 273

Query:    61 DKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAENHNPATAKTYIYLHLPQ 120
             DKDSKQRLKAMSRC QPIPCS+FN DGSI+AY+ CYDWSKGAENHNPATAK+ I+LHLPQ
Sbjct:   274 DKDSKQRLKAMSRCNQPIPCSSFNHDGSIYAYAACYDWSKGAENHNPATAKSSIFLHLPQ 333

Query:   121 ETEVKGKPRAGTSGRK 136
             E+EVK KPR G +GRK
Sbjct:   334 ESEVKAKPRVGATGRK 349

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IPI

GO:0005829 "cytosol" evidence=IDA

GO:0005635 "nuclear envelope" evidence=IDA

POMBASE|SPBC16A3.05c rae1 "RNA export factor, nucleoporin Rae1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 69/136 (50%), Positives = 95/136 (69%)

Query:     1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRD----GSEIYSVNSLNFHPIHHTFATAGSDGA 56
             +GS+EGR  + ++D+   S+NF+F+CHR+     +++YSVNS+ FHP + TF+TAGSDG 
Sbjct:   218 IGSVEGRCAIQNIDEKNASQNFSFRCHRNQAGNSADVYSVNSIAFHPQYGTFSTAGSDGT 277

Query:    57 FNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAENHNPATAKTYIYL 116
             F+FWDKDS QRLK+    G  I CSTFN  G IFAY++ YDWSKG   +N A     I L
Sbjct:   278 FSFWDKDSHQRLKSYPNVGGTISCSTFNRTGDIFAYAISYDWSKGYTFNN-AQLPNKIML 336

Query:   117 H-LPQETEVKGKPRAG 131
             H +PQ+ E+K +P+ G
Sbjct:   337 HPVPQD-EIKPRPKKG 351

GO:0000054 "ribosomal subunit export from nucleus" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005635 "nuclear envelope" evidence=IDA

GO:0005643 "nuclear pore" evidence=ISO;IDA

GO:0006606 "protein import into nucleus" evidence=TAS

GO:0010389 "regulation of G2/M transition of mitotic cell cycle" evidence=IMP

GO:0016973 "poly(A)+ mRNA export from nucleus" evidence=IMP

GO:0007094 "mitotic spindle assembly checkpoint" evidence=IMP

UNIPROTKB|G4NDD2 MGG_00946 "Poly(A)+ RNA export protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 66/133 (49%), Positives = 92/133 (69%)

Query:     1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRD---GS--EIYSVNSLNFHPIHHTFATAGSDG 55
             +GSIEGR  + +++D   S NF+FKCHRD   GS   +++VN ++FHP+H TF+TAGSDG
Sbjct:   222 IGSIEGRCAIQYVEDKDSSSNFSFKCHRDAPQGSVTSVHAVNDISFHPVHGTFSTAGSDG 281

Query:    56 AFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAENHNPATAKTYIY 115
              F+FWDKD+K RLK     G  I  +TFN +G+IFAY+V YDW+KG + +N +T    + 
Sbjct:   282 TFHFWDKDAKHRLKGYPNVGGSITATTFNKNGNIFAYAVSYDWAKGYQGNN-STYPNKVM 340

Query:   116 LHLPQETEVKGKP 128
             LH  Q+ E K +P
Sbjct:   341 LHPVQQDECKPRP 353

GO:0003674 "molecular_function" evidence=ND

ZFIN|ZDB-GENE-040426-1029 rae1 "RAE1 RNA export 1 homolog (S. pombe)" [Danio rerio (taxid:7955)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 69/137 (50%), Positives = 94/137 (68%)

Query:     1 VGSIEGRVGVHHLDDSQQSK-NFTFKCHR-DGS------EIYSVNSLNFHPIHHTFATAG 52
             +GSIEGRV +H+++    +K NFTFKCHR +G+      +IY+VN+++FHP+H T AT G
Sbjct:   233 LGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTATPQDIYAVNAISFHPVHGTLATVG 292

Query:    53 SDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAENHNPATAKT 112
             SDG F+FWDKD++ +LK   +  QPI    FN +G+IFAY+  YDWSKG E +NP   K 
Sbjct:   293 SDGRFSFWDKDARTKLKTSEQLDQPITACCFNHNGNIFAYASSYDWSKGHEYYNPQK-KN 351

Query:   113 YIYLHLPQETEVKGKPR 129
             YI+L    E E+K  PR
Sbjct:   352 YIFLRNAAE-ELK--PR 365

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

ASPGD|ASPL0000060741 sonA [Emericella nidulans (taxid:162425)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 66/137 (48%), Positives = 87/137 (63%)

Query:     1 VGSIEGRVGVHHLDDSQQSKNFTFKCHR-------DGSEIYSVNSLNFHPIHHTFATAGS 53
             VGSIEGR  + +++D   S NF+FKCHR       D + IYSVN+++FHP+H TF+TAG+
Sbjct:   224 VGSIEGRCAIQYVEDKDSSSNFSFKCHRETPPNQRDINNIYSVNAISFHPVHGTFSTAGA 283

Query:    54 DGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAENHNPATAKTY 113
             DG F+FWDKD+K RLK     G  I  + FN  G+IFAY+V YDWSKG   + P      
Sbjct:   284 DGTFHFWDKDAKHRLKGYPSVGGTISSTAFNRTGNIFAYAVSYDWSKGYSANTPQLPNK- 342

Query:   114 IYLHLPQETEVKGKPRA 130
             + LH   + EVK +  A
Sbjct:   343 VMLHPVAQEEVKPRQNA 359

GO:0034399 "nuclear periphery" evidence=IDA

GO:0005643 "nuclear pore" evidence=ISS

GO:0003674 "molecular_function" evidence=ND

GO:0016973 "poly(A)+ mRNA export from nucleus" evidence=IEA

GO:0010389 "regulation of G2/M transition of mitotic cell cycle" evidence=IEA

UNIPROTKB|Q7ZZY7 Rae1/Gle2 "Rae1/Gle2" [Xenopus laevis (taxid:8355)]

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 70/137 (51%), Positives = 92/137 (67%)

Query:     1 VGSIEGRVGVHHLDDSQQSK-NFTFKCHR-DGS------EIYSVNSLNFHPIHHTFATAG 52
             +GSIEGRV +H+++    +K NFTFKCHR +G+      +IY+VN + FHP+H T AT G
Sbjct:   233 LGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTAAPQDIYAVNDIAFHPVHGTLATVG 292

Query:    53 SDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAENHNPATAKT 112
             SDG F+FWDKD++ +LK   +  QPI    FN +G+IFAYS  YDWSKG E +NP   K 
Sbjct:   293 SDGRFSFWDKDARTKLKTSEQLDQPITACCFNHNGNIFAYSSSYDWSKGHEFYNPQK-KN 351

Query:   113 YIYLHLPQETEVKGKPR 129
             YI+L    E E+K  PR
Sbjct:   352 YIFLRNAAE-ELK--PR 365

GO:0005515 "protein binding" evidence=IPI

GO:0008017 "microtubule binding" evidence=IDA

UNIPROTKB|E1C7F8 Gga.22300 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 69/137 (50%), Positives = 92/137 (67%)

Query:     1 VGSIEGRVGVHHLDDSQQSK-NFTFKCHR-DGS------EIYSVNSLNFHPIHHTFATAG 52
             +GSIEGRV +H+++    +K NFTFKCHR +G+      +IY+VN + FHP+H T AT G
Sbjct:   233 LGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVG 292

Query:    53 SDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAENHNPATAKT 112
             SDG F+FWDKD++ +LK   +  QPI    FN +G+IFAY+  YDWSKG E +NP   K 
Sbjct:   293 SDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQK-KN 351

Query:   113 YIYLHLPQETEVKGKPR 129
             YI+L    E E+K  PR
Sbjct:   352 YIFLRNAAE-ELK--PR 365

GO:0071407 "cellular response to organic cyclic compound" evidence=IEA

UNIPROTKB|Q5E9A4 RAE1 "mRNA export factor" [Bos taurus (taxid:9913)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 69/137 (50%), Positives = 92/137 (67%)

Query:     1 VGSIEGRVGVHHLDDSQQSK-NFTFKCHR-DGS------EIYSVNSLNFHPIHHTFATAG 52
             +GSIEGRV +H+++    +K NFTFKCHR +G+      +IY+VN + FHP+H T AT G
Sbjct:   233 LGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVG 292

Query:    53 SDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAENHNPATAKT 112
             SDG F+FWDKD++ +LK   +  QPI    FN +G+IFAY+  YDWSKG E +NP   K 
Sbjct:   293 SDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQK-KN 351

Query:   113 YIYLHLPQETEVKGKPR 129
             YI+L    E E+K  PR
Sbjct:   352 YIFLRNAAE-ELK--PR 365

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0071407 "cellular response to organic cyclic compound" evidence=IEA

UNIPROTKB|E2RSV2 RAE1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 69/137 (50%), Positives = 92/137 (67%)

Query:     1 VGSIEGRVGVHHLDDSQQSK-NFTFKCHR-DGS------EIYSVNSLNFHPIHHTFATAG 52
             +GSIEGRV +H+++    +K NFTFKCHR +G+      +IY+VN + FHP+H T AT G
Sbjct:   233 LGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVG 292

Query:    53 SDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAENHNPATAKT 112
             SDG F+FWDKD++ +LK   +  QPI    FN +G+IFAY+  YDWSKG E +NP   K 
Sbjct:   293 SDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQK-KN 351

Query:   113 YIYLHLPQETEVKGKPR 129
             YI+L    E E+K  PR
Sbjct:   352 YIFLRNAAE-ELK--PR 365

GO:0071407 "cellular response to organic cyclic compound" evidence=IEA

UNIPROTKB|P78406 RAE1 "mRNA export factor" [Homo sapiens (taxid:9606)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 69/137 (50%), Positives = 92/137 (67%)

Query:     1 VGSIEGRVGVHHLDDSQQSK-NFTFKCHR-DGS------EIYSVNSLNFHPIHHTFATAG 52
             +GSIEGRV +H+++    +K NFTFKCHR +G+      +IY+VN + FHP+H T AT G
Sbjct:   233 LGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVG 292

Query:    53 SDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAENHNPATAKT 112
             SDG F+FWDKD++ +LK   +  QPI    FN +G+IFAY+  YDWSKG E +NP   K 
Sbjct:   293 SDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQK-KN 351

Query:   113 YIYLHLPQETEVKGKPR 129
             YI+L    E E+K  PR
Sbjct:   352 YIFLRNAAE-ELK--PR 365

GO:0071407 "cellular response to organic cyclic compound" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008017 "microtubule binding" evidence=ISS

GO:0003723 "RNA binding" evidence=TAS

GO:0005634 "nucleus" evidence=TAS

GO:0005640 "nuclear outer membrane" evidence=TAS

GO:0005643 "nuclear pore" evidence=TAS

GO:0005856 "cytoskeleton" evidence=TAS

GO:0006406 "mRNA export from nucleus" evidence=TAS

GO:0005635 "nuclear envelope" evidence=TAS

GO:0005975 "carbohydrate metabolic process" evidence=TAS

GO:0008645 "hexose transport" evidence=TAS

GO:0010827 "regulation of glucose transport" evidence=TAS

GO:0015758 "glucose transport" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0019221 "cytokine-mediated signaling pathway" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q38942	RAE1L_ARATH	No assigned EC number	0.8676	1.0	0.3896	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	136
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-04
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-04
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	0.001
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.002
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	0.004
smart00320	40	smart00320, WD40, WD40 repeats	0.004

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 40.1 bits (92), Expect = 1e-04
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 2/66 (3%)

Query: 34  YSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCG--QPIPCSTFNTDGSIFA 91
            SV S+ F P     A+  SDG    WD ++ + L +++  G   P+   +F+ DGS+  
Sbjct: 285 SSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLV 344

Query: 92  YSVCYD 97
                D
Sbjct: 345 SGGSDD 350

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 38.1 bits (89), Expect = 5e-04
 Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 6/84 (7%)

Query: 14  DDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSR 73
           D        T   H        V+S+ F P     +++  D     WD ++ + L  +  
Sbjct: 79  DLETGECVRTLTGHTSY-----VSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRG 133

Query: 74  CGQPIPCSTFNTDGSIFAYSVCYD 97
               +    F+ DG+ F  S   D
Sbjct: 134 HTDWVNSVAFSPDGT-FVASSSQD 156

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 36.9 bits (86), Expect = 0.001
 Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 5/69 (7%)

Query: 23  TFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCST 82
           T   H        VNS+ F P      ++ SDG    WD  + + L  +      +    
Sbjct: 172 TLTGHTG-----EVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVA 226

Query: 83  FNTDGSIFA 91
           F+ DG + A
Sbjct: 227 FSPDGYLLA 235

Length = 289

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 33.5 bits (77), Expect = 0.002
 Identities = 12/40 (30%), Positives = 15/40 (37%), Gaps = 5/40 (12%)

Query: 22 FTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWD 61
           T K H        V S+ F P  +  A+   DG    WD
Sbjct: 5  RTLKGHTG-----PVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 35.4 bits (82), Expect = 0.004
 Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 7/91 (7%)

Query: 1   VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFW 60
             S +G + +  L   +     T + H +G     VNS+ F P  +  A+   DG    W
Sbjct: 194 SSSSDGTIKLWDLSTGKCLG--TLRGHENG-----VNSVAFSPDGYLLASGSEDGTIRVW 246

Query: 61  DKDSKQRLKAMSRCGQPIPCSTFNTDGSIFA 91
           D  + + ++ +S     +    ++ DG   A
Sbjct: 247 DLRTGECVQTLSGHTNSVTSLAWSPDGKRLA 277

Length = 289

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 33.1 bits (76), Expect = 0.004
 Identities = 12/40 (30%), Positives = 14/40 (35%), Gaps = 5/40 (12%)

Query: 22 FTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWD 61
           T K H        V S+ F P     A+   DG    WD
Sbjct: 6  KTLKGHTG-----PVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	136
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.91
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.71
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.55
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.55
KOG0266	456	consensus WD40 repeat-containing protein [General	99.55
KOG0286	343	consensus G-protein beta subunit [General function	99.54
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.51
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.51
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.51
PTZ00421	493	coronin; Provisional	99.48
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.47
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	99.42
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	99.41
KOG0266	456	consensus WD40 repeat-containing protein [General	99.41
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.39
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.37
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.37
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.36
KOG0296	399	consensus Angio-associated migratory cell protein	99.35
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.34
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.34
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.34
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.33
PTZ00420	568	coronin; Provisional	99.33
KOG0286	343	consensus G-protein beta subunit [General function	99.3
KOG0643	327	consensus Translation initiation factor 3, subunit	99.3
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.3
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.3
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.3
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.29
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.28
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.28
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.23
KOG0289	506	consensus mRNA splicing factor [General function p	99.23
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.23
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.22
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.21
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.21
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.21
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.2
PTZ00420	568	coronin; Provisional	99.19
PTZ00421	493	coronin; Provisional	99.19
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.18
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.18
PLN00181	793	protein SPA1-RELATED; Provisional	99.17
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.17
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.17
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.17
KOG0645	312	consensus WD40 repeat protein [General function pr	99.16
KOG0645	312	consensus WD40 repeat protein [General function pr	99.16
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.16
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.15
KOG1273	405	consensus WD40 repeat protein [General function pr	99.15
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.15
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.15
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.15
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.14
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.13
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.12
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.12
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.1
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.1
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.09
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.08
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.08
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.07
KOG1539	910	consensus WD repeat protein [General function pred	99.07
KOG0289	506	consensus mRNA splicing factor [General function p	99.06
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.06
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.06
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.05
PLN00181	793	protein SPA1-RELATED; Provisional	99.04
KOG0267	825	consensus Microtubule severing protein katanin p80	99.04
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.03
KOG0639	705	consensus Transducin-like enhancer of split protei	99.01
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.01
KOG0310	487	consensus Conserved WD40 repeat-containing protein	98.99
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	98.98
KOG0296	399	consensus Angio-associated migratory cell protein	98.97
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	98.97
KOG0643	327	consensus Translation initiation factor 3, subunit	98.97
KOG0315	311	consensus G-protein beta subunit-like protein (con	98.97
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	98.96
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	98.96
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	98.96
KOG0288	459	consensus WD40 repeat protein TipD [General functi	98.96
KOG0316	307	consensus Conserved WD40 repeat-containing protein	98.95
KOG0640	430	consensus mRNA cleavage stimulating factor complex	98.95
KOG0303	472	consensus Actin-binding protein Coronin, contains	98.94
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	98.93
KOG0267	825	consensus Microtubule severing protein katanin p80	98.93
KOG0641	350	consensus WD40 repeat protein [General function pr	98.92
KOG0294	362	consensus WD40 repeat-containing protein [Function	98.92
KOG0973	942	consensus Histone transcription regulator HIRA, WD	98.92
KOG0269	839	consensus WD40 repeat-containing protein [Function	98.91
KOG0310	487	consensus Conserved WD40 repeat-containing protein	98.91
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	98.91
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	98.91
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	98.91
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	98.9
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	98.88
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	98.87
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	98.87
KOG1407	313	consensus WD40 repeat protein [Function unknown]	98.87
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	98.87
KOG1273	405	consensus WD40 repeat protein [General function pr	98.87
KOG4283	397	consensus Transcription-coupled repair protein CSA	98.86
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.84
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	98.82
KOG1188	376	consensus WD40 repeat protein [General function pr	98.82
KOG0973	942	consensus Histone transcription regulator HIRA, WD	98.81
KOG0270	463	consensus WD40 repeat-containing protein [Function	98.81
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	98.81
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	98.8
KOG0293	519	consensus WD40 repeat-containing protein [Function	98.79
KOG0300	481	consensus WD40 repeat-containing protein [Function	98.77
KOG0278	334	consensus Serine/threonine kinase receptor-associa	98.77
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	98.76
KOG0302	440	consensus Ribosome Assembly protein [General funct	98.76
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	98.76
KOG0283	712	consensus WD40 repeat-containing protein [Function	98.76
KOG0640	430	consensus mRNA cleavage stimulating factor complex	98.75
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	98.75
KOG1274	933	consensus WD40 repeat protein [General function pr	98.75
KOG0301	745	consensus Phospholipase A2-activating protein (con	98.73
KOG1539	910	consensus WD repeat protein [General function pred	98.71
KOG0772	641	consensus Uncharacterized conserved protein, conta	98.67
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	98.66
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	98.66
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	98.65
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	98.65
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	98.64
KOG0639	705	consensus Transducin-like enhancer of split protei	98.62
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	98.61
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	98.6
KOG0270	463	consensus WD40 repeat-containing protein [Function	98.59
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	98.57
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	98.55
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	98.55
KOG0290	364	consensus Conserved WD40 repeat-containing protein	98.54
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	98.53
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	98.52
KOG0646	476	consensus WD40 repeat protein [General function pr	98.52
KOG0301	745	consensus Phospholipase A2-activating protein (con	98.48
KOG2110	391	consensus Uncharacterized conserved protein, conta	98.47
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	98.47
KOG4283	397	consensus Transcription-coupled repair protein CSA	98.46
KOG0646	476	consensus WD40 repeat protein [General function pr	98.46
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	98.45
KOG0308	735	consensus Conserved WD40 repeat-containing protein	98.45
KOG2055	514	consensus WD40 repeat protein [General function pr	98.45
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	98.43
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	98.43
KOG2096	420	consensus WD40 repeat protein [General function pr	98.42
KOG1274	933	consensus WD40 repeat protein [General function pr	98.4
KOG1063	764	consensus RNA polymerase II elongator complex, sub	98.39
KOG4547	541	consensus WD40 repeat-containing protein [General	98.39
COG2319	466	FOG: WD40 repeat [General function prediction only	98.38
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	98.37
KOG2106	626	consensus Uncharacterized conserved protein, conta	98.36
KOG2106	626	consensus Uncharacterized conserved protein, conta	98.36
KOG2096	420	consensus WD40 repeat protein [General function pr	98.36
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	98.35
KOG2048	691	consensus WD40 repeat protein [General function pr	98.35
KOG0300	481	consensus WD40 repeat-containing protein [Function	98.34
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	98.33
KOG0771	398	consensus Prolactin regulatory element-binding pro	98.33
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	98.32
KOG0288	459	consensus WD40 repeat protein TipD [General functi	98.31
KOG1310	758	consensus WD40 repeat protein [General function pr	98.3
KOG0771	398	consensus Prolactin regulatory element-binding pro	98.29
KOG4328	498	consensus WD40 protein [Function unknown]	98.28
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	98.26
KOG1188	376	consensus WD40 repeat protein [General function pr	98.26
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	98.24
KOG3881	412	consensus Uncharacterized conserved protein [Funct	98.23
KOG0303	472	consensus Actin-binding protein Coronin, contains	98.22
KOG1963	792	consensus WD40 repeat protein [General function pr	98.22
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	98.22
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.22
KOG2048	691	consensus WD40 repeat protein [General function pr	98.16
KOG0649	325	consensus WD40 repeat protein [General function pr	98.16
KOG2055	514	consensus WD40 repeat protein [General function pr	98.16
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	98.16
KOG1063	764	consensus RNA polymerase II elongator complex, sub	98.15
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	98.15
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	98.13
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	98.13
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	98.13
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	98.12
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	98.12
COG2319	466	FOG: WD40 repeat [General function prediction only	98.1
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	98.09
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	98.08
KOG0641	350	consensus WD40 repeat protein [General function pr	98.07
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	98.04
KOG0644	1113	consensus Uncharacterized conserved protein, conta	98.03
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	98.01
KOG1310	758	consensus WD40 repeat protein [General function pr	98.0
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	97.98
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.97
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	97.95
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	97.92
KOG2139	445	consensus WD40 repeat protein [General function pr	97.91
KOG0280	339	consensus Uncharacterized conserved protein [Amino	97.83
KOG0290	364	consensus Conserved WD40 repeat-containing protein	97.81
KOG0649	325	consensus WD40 repeat protein [General function pr	97.8
PRK01742	429	tolB translocation protein TolB; Provisional	97.79
PRK05137	435	tolB translocation protein TolB; Provisional	97.74
KOG4328	498	consensus WD40 protein [Function unknown]	97.71
KOG1409	404	consensus Uncharacterized conserved protein, conta	97.71
KOG2139	445	consensus WD40 repeat protein [General function pr	97.67
PRK02889	427	tolB translocation protein TolB; Provisional	97.67
KOG4547	541	consensus WD40 repeat-containing protein [General	97.64
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	97.58
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	97.57
KOG1963	792	consensus WD40 repeat protein [General function pr	97.56
PRK01742	429	tolB translocation protein TolB; Provisional	97.56
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.49
KOG4714	319	consensus Nucleoporin [Nuclear structure]	97.48
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	97.48
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	97.47
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	97.44
KOG2111	346	consensus Uncharacterized conserved protein, conta	97.43
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	97.39
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	97.38
PRK03629	429	tolB translocation protein TolB; Provisional	97.37
PRK05137	435	tolB translocation protein TolB; Provisional	97.36
KOG0644	1113	consensus Uncharacterized conserved protein, conta	97.33
COG4946	668	Uncharacterized protein related to the periplasmic	97.32
KOG2315	566	consensus Predicted translation initiation factor	97.3
PRK04922	433	tolB translocation protein TolB; Provisional	97.3
KOG2321	703	consensus WD40 repeat protein [General function pr	97.3
KOG3881	412	consensus Uncharacterized conserved protein [Funct	97.28
PRK02889	427	tolB translocation protein TolB; Provisional	97.28
PRK03629	429	tolB translocation protein TolB; Provisional	97.19
PRK11028	330	6-phosphogluconolactonase; Provisional	97.15
PRK04922	433	tolB translocation protein TolB; Provisional	97.14
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	97.14
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	97.11
PRK00178	430	tolB translocation protein TolB; Provisional	97.11
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	97.1
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	97.09
KOG4227	609	consensus WD40 repeat protein [General function pr	97.08
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.06
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	97.05
KOG4227	609	consensus WD40 repeat protein [General function pr	97.02
PRK01029	428	tolB translocation protein TolB; Provisional	97.02
PRK11028	330	6-phosphogluconolactonase; Provisional	96.95
PRK04792	448	tolB translocation protein TolB; Provisional	96.95
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	96.9
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.87
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.79
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	96.76
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	96.75
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	96.71
PRK00178	430	tolB translocation protein TolB; Provisional	96.69
KOG2695	425	consensus WD40 repeat protein [General function pr	96.65
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	96.64
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	96.62
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	96.62
KOG0280	339	consensus Uncharacterized conserved protein [Amino	96.6
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	96.58
KOG4714	319	consensus Nucleoporin [Nuclear structure]	96.57
KOG1334	559	consensus WD40 repeat protein [General function pr	96.56
PRK04792	448	tolB translocation protein TolB; Provisional	96.55
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	96.54
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	96.53
KOG4532	344	consensus WD40-like repeat containing protein [Gen	96.49
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.43
KOG2321	703	consensus WD40 repeat protein [General function pr	96.41
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	96.21
KOG2695	425	consensus WD40 repeat protein [General function pr	96.11
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.1
PRK01029	428	tolB translocation protein TolB; Provisional	96.1
KOG4532	344	consensus WD40-like repeat containing protein [Gen	96.08
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.07
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	96.05
KOG1334	559	consensus WD40 repeat protein [General function pr	95.86
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	95.85
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	95.77
COG4946	668	Uncharacterized protein related to the periplasmic	95.75
KOG2041	1189	consensus WD40 repeat protein [General function pr	95.7
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	95.65
PRK04043	419	tolB translocation protein TolB; Provisional	95.64
KOG2314	698	consensus Translation initiation factor 3, subunit	95.51
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	95.4
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	95.31
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	95.27
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	95.13
KOG2315	566	consensus Predicted translation initiation factor	95.04
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	94.98
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	94.98
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	94.88
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	94.71
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	94.62
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	94.35
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	94.26
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	94.18
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	93.78
KOG3621	726	consensus WD40 repeat-containing protein [General	93.75
PRK04043	419	tolB translocation protein TolB; Provisional	93.73
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	93.71
KOG2444	238	consensus WD40 repeat protein [General function pr	93.5
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	93.35
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	93.35
KOG1912	1062	consensus WD40 repeat protein [General function pr	93.26
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	93.11
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	93.02
KOG1912	1062	consensus WD40 repeat protein [General function pr	92.97
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	92.9
KOG3621	726	consensus WD40 repeat-containing protein [General	92.89
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	92.8
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	92.02
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	91.82
KOG2314	698	consensus Translation initiation factor 3, subunit	91.68
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	91.48
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	91.43
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	91.24
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	91.05
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	90.89
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	90.87
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	90.6
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	90.47
KOG1008	783	consensus Uncharacterized conserved protein, conta	90.46
KOG2395	644	consensus Protein involved in vacuole import and d	90.4
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	90.36
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	89.99
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	89.91
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	89.86
KOG1409	404	consensus Uncharacterized conserved protein, conta	89.24
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	89.04
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	89.04
KOG2041	1189	consensus WD40 repeat protein [General function pr	88.95
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	88.03
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	87.94
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	87.72
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	87.37
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	87.04
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	86.7
PRK02888	635	nitrous-oxide reductase; Validated	86.47
PRK02888	635	nitrous-oxide reductase; Validated	85.79
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	85.53
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	85.32
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	84.13
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	83.94
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	83.86
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	83.36
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	83.08
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	82.32
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	82.25
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	82.12
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	82.12
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	82.03
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	82.0
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	81.78
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	81.63
PRK13616	591	lipoprotein LpqB; Provisional	81.51
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	81.05
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	80.4

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.91  E-value=1.5e-23  Score=154.65  Aligned_cols=129  Identities=53%  Similarity=1.018  Sum_probs=120.9

Q ss_pred             CCceeceEEEEEeeCCCCcceeEEEeeeC----CCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCC
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRD----GSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQ   76 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~----~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~   76 (136)
                      +||+||.+.|.++|....+..++|+||+.    ...+|+|+.|+|||....|++++.||.+.+||-+....+.+...|..
T Consensus       215 lGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~q  294 (347)
T KOG0647|consen  215 LGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQ  294 (347)
T ss_pred             eeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCC
Confidence            58999999999999977799999999995    44589999999999999999999999999999998888899999999


Q ss_pred             ceeEEEEccCCCEEEEEEcccccccccccCCCCCcceEEEEcCCcccccccCCC
Q 041215           77 PIPCSTFNTDGSIFAYSVCYDWSKGAENHNPATAKTYIYLHLPQETEVKGKPRA  130 (136)
Q Consensus        77 ~v~~v~~sp~~~~l~s~~~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (136)
                      +|.|.+|+.+|.++|.+.+|||++|++...|. .+.+|.+|++..+|+|||+||
T Consensus       295 pItcc~fn~~G~ifaYA~gYDWSkGhe~~n~~-~~~~I~l~~~~~~evK~r~~k  347 (347)
T KOG0647|consen  295 PITCCSFNRNGSIFAYALGYDWSKGHEGNNPQ-YKPQIFLHPVSTEEVKPRPKK  347 (347)
T ss_pred             ccceeEecCCCCEEEEEeecccccccccCCCC-CCCeEEEeeccccccccCCCC
Confidence            99999999999999999999999999999999 667999999999999999986

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.71  E-value=6.2e-17  Score=119.87  Aligned_cols=124  Identities=43%  Similarity=0.732  Sum_probs=109.1

Q ss_pred             CCceeceEEEEEeeCC--CCcceeEEEeeeC----CCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccC
Q 041215            1 VGSIEGRVGVHHLDDS--QQSKNFTFKCHRD----GSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRC   74 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~--~~~~~~~l~~h~~----~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h   74 (136)
                      ++|.||+|.+-++|..  .....+.|+||+.    -...|+|++|+|||-...|+||+.||.|.+||..+.+.+.++...
T Consensus       194 ~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~  273 (323)
T KOG1036|consen  194 VSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY  273 (323)
T ss_pred             EEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC
Confidence            5799999999999886  3567899999975    566789999999999999999999999999999999989998877


Q ss_pred             CCceeEEEEccCCCEEEEEEcccccccccccCCCCCcceEEEEcCCccccccc
Q 041215           75 GQPIPCSTFNTDGSIFAYSVCYDWSKGAENHNPATAKTYIYLHLPQETEVKGK  127 (136)
Q Consensus        75 ~~~v~~v~~sp~~~~l~s~~~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (136)
                      ...|.+++|+.+|..||.|+++-+..+-.-   +++...+.+|.+.+.|.+||
T Consensus       274 ~~SI~slsfs~dG~~LAia~sy~ye~~~~~---~~~~~~i~I~~l~d~e~~pk  323 (323)
T KOG1036|consen  274 ETSISSLSFSMDGSLLAIASSYQYERADTP---THERNAIFIRDLTDYETKPK  323 (323)
T ss_pred             CCceEEEEeccCCCeEEEEechhhhcCCCC---CCCCCceEEEeccccccCCC
Confidence            788999999999999999999887754433   34779999999999999997

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.55  E-value=2.2e-14  Score=116.33  Aligned_cols=92  Identities=24%  Similarity=0.362  Sum_probs=86.9

Q ss_pred             CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC   80 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~   80 (136)
                      .||.|.++++  ||..++.....|.+|.+     +|.+++|+|.|++|++|+.|+.|.+||+.++..+.++.+|.+.|.+
T Consensus       552 TGSsD~tVRl--WDv~~G~~VRiF~GH~~-----~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~S  624 (707)
T KOG0263|consen  552 TGSSDRTVRL--WDVSTGNSVRIFTGHKG-----PVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYS  624 (707)
T ss_pred             cCCCCceEEE--EEcCCCcEEEEecCCCC-----ceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeE
Confidence            3789999999  88899999999999999     9999999999999999999999999999999999999999999999


Q ss_pred             EEEccCCCEEEEEEccccc
Q 041215           81 STFNTDGSIFAYSVCYDWS   99 (136)
Q Consensus        81 v~~sp~~~~l~s~~~dd~~   99 (136)
                      |.|+.+|..||+|+.|.-.
T Consensus       625 lsFS~dg~vLasgg~DnsV  643 (707)
T KOG0263|consen  625 LSFSRDGNVLASGGADNSV  643 (707)
T ss_pred             EEEecCCCEEEecCCCCeE
Confidence            9999999999998887743

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.55  E-value=1.1e-14  Score=118.04  Aligned_cols=91  Identities=19%  Similarity=0.288  Sum_probs=83.3

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS   81 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v   81 (136)
                      ||-|++-++|..  ....++..|.+|-+     .|.|++|||+..++++||.|.+|++||+.+|..+..|.+|.++|.++
T Consensus       511 as~D~tArLWs~--d~~~PlRifaghls-----DV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al  583 (707)
T KOG0263|consen  511 ASHDQTARLWST--DHNKPLRIFAGHLS-----DVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTAL  583 (707)
T ss_pred             cCCCceeeeeec--ccCCchhhhccccc-----ccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEE
Confidence            678888888555  45788999999999     99999999999999999999999999999999999999999999999


Q ss_pred             EEccCCCEEEEEEccccc
Q 041215           82 TFNTDGSIFAYSVCYDWS   99 (136)
Q Consensus        82 ~~sp~~~~l~s~~~dd~~   99 (136)
                      +|||+|++|++|+.|.-.
T Consensus       584 ~~Sp~Gr~LaSg~ed~~I  601 (707)
T KOG0263|consen  584 AFSPCGRYLASGDEDGLI  601 (707)
T ss_pred             EEcCCCceEeecccCCcE
Confidence            999999999998877633

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.55  E-value=4.5e-14  Score=112.26  Aligned_cols=90  Identities=20%  Similarity=0.329  Sum_probs=83.0

Q ss_pred             CceeceEEEEEeeC-CCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215            2 GSIEGRVGVHHLDD-SQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC   80 (136)
Q Consensus         2 gs~dG~v~i~~~d~-~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~   80 (136)
                      |+.|++++|  ||. ..+....++++|..     .|.+++|+|+++++++|+.|+.|++||+.++.++..+.+|.+.|.+
T Consensus       221 ~s~D~tiri--wd~~~~~~~~~~l~gH~~-----~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~  293 (456)
T KOG0266|consen  221 GSDDKTLRI--WDLKDDGRNLKTLKGHST-----YVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISG  293 (456)
T ss_pred             ecCCceEEE--eeccCCCeEEEEecCCCC-----ceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEE
Confidence            688999988  777 55688999999999     9999999999999999999999999999999999999999999999


Q ss_pred             EEEccCCCEEEEEEcccc
Q 041215           81 STFNTDGSIFAYSVCYDW   98 (136)
Q Consensus        81 v~~sp~~~~l~s~~~dd~   98 (136)
                      ++|++++.++++++.|..
T Consensus       294 ~~f~~d~~~l~s~s~d~~  311 (456)
T KOG0266|consen  294 LAFSPDGNLLVSASYDGT  311 (456)
T ss_pred             EEECCCCCEEEEcCCCcc
Confidence            999999999999866553

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.54  E-value=7e-14  Score=103.47  Aligned_cols=96  Identities=23%  Similarity=0.280  Sum_probs=88.2

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeC-CCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHP-IHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC   80 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p-~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~   80 (136)
                      ||-|.+..+  ||+++++....|.+|.+     .|-++++.| +++.+++|+.|...++||++.+.+++.|.+|.+.|++
T Consensus       162 ~SGD~TCal--WDie~g~~~~~f~GH~g-----DV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINs  234 (343)
T KOG0286|consen  162 GSGDMTCAL--WDIETGQQTQVFHGHTG-----DVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINS  234 (343)
T ss_pred             cCCCceEEE--EEcccceEEEEecCCcc-----cEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccce
Confidence            566667766  99999999999999999     999999999 8899999999999999999999999999999999999


Q ss_pred             EEEccCCCEEEEEEcccccccccc
Q 041215           81 STFNTDGSIFAYSVCYDWSKGAEN  104 (136)
Q Consensus        81 v~~sp~~~~l~s~~~dd~~~~~~~  104 (136)
                      |+|.|+|.-+++|+.|..-..++.
T Consensus       235 v~ffP~G~afatGSDD~tcRlyDl  258 (343)
T KOG0286|consen  235 VRFFPSGDAFATGSDDATCRLYDL  258 (343)
T ss_pred             EEEccCCCeeeecCCCceeEEEee
Confidence            999999999999988887766655

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.51  E-value=1.1e-13  Score=104.80  Aligned_cols=90  Identities=18%  Similarity=0.254  Sum_probs=84.9

Q ss_pred             CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC   80 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~   80 (136)
                      +||.|++|++  ||+.++..++++.+|.+     -|..++|+|.|++|+++.+|+++++||+.++.++.++..|...|++
T Consensus       309 s~SrDktIk~--wdv~tg~cL~tL~ghdn-----wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~  381 (406)
T KOG0295|consen  309 SGSRDKTIKI--WDVSTGMCLFTLVGHDN-----WVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTS  381 (406)
T ss_pred             eecccceEEE--EeccCCeEEEEEecccc-----eeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEE
Confidence            4799999998  88899999999999999     9999999999999999999999999999999999999999999999


Q ss_pred             EEEccCCCEEEEEEccc
Q 041215           81 STFNTDGSIFAYSVCYD   97 (136)
Q Consensus        81 v~~sp~~~~l~s~~~dd   97 (136)
                      +.|+.+..+++||+-|-
T Consensus       382 lDfh~~~p~VvTGsVdq  398 (406)
T KOG0295|consen  382 LDFHKTAPYVVTGSVDQ  398 (406)
T ss_pred             EecCCCCceEEeccccc
Confidence            99999999999986543

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.51  E-value=2.2e-14  Score=110.11  Aligned_cols=92  Identities=21%  Similarity=0.221  Sum_probs=85.0

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS   81 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v   81 (136)
                      +|-|.+=++  ||.+++..+....+|..     .|.+++|+|+|.++++|+.|..-+|||+.+|.++-.+.+|..+|.+|
T Consensus       279 asfD~tWRl--WD~~tk~ElL~QEGHs~-----~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V  351 (459)
T KOG0272|consen  279 ASFDSTWRL--WDLETKSELLLQEGHSK-----GVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSV  351 (459)
T ss_pred             cccccchhh--cccccchhhHhhccccc-----ccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeE
Confidence            566667666  88899998888899999     99999999999999999999999999999999999999999999999


Q ss_pred             EEccCCCEEEEEEcccccc
Q 041215           82 TFNTDGSIFAYSVCYDWSK  100 (136)
Q Consensus        82 ~~sp~~~~l~s~~~dd~~~  100 (136)
                      +|+|+|..+|||++|+.-+
T Consensus       352 ~fsPNGy~lATgs~Dnt~k  370 (459)
T KOG0272|consen  352 AFSPNGYHLATGSSDNTCK  370 (459)
T ss_pred             eECCCceEEeecCCCCcEE
Confidence            9999999999999999654

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.51  E-value=4.8e-14  Score=108.25  Aligned_cols=90  Identities=17%  Similarity=0.241  Sum_probs=82.9

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS   81 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v   81 (136)
                      |+.|...+|  ||.+++..+..|.+|..     +|..++|+|+|..|++|+.|++++|||++....++++.+|..-|..|
T Consensus       321 GGlD~~~Rv--WDlRtgr~im~L~gH~k-----~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~V  393 (459)
T KOG0272|consen  321 GGLDSLGRV--WDLRTGRCIMFLAGHIK-----EILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQV  393 (459)
T ss_pred             cCccchhhe--eecccCcEEEEeccccc-----ceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhhe
Confidence            677888888  88899999999999999     99999999999999999999999999999998999999999999999


Q ss_pred             EEcc-CCCEEEEEEcccc
Q 041215           82 TFNT-DGSIFAYSVCYDW   98 (136)
Q Consensus        82 ~~sp-~~~~l~s~~~dd~   98 (136)
                      .|+| .|.+|+||+-|..
T Consensus       394 k~~p~~g~fL~TasyD~t  411 (459)
T KOG0272|consen  394 KYSPQEGYFLVTASYDNT  411 (459)
T ss_pred             EecccCCeEEEEcccCcc
Confidence            9998 6788888766653

>PTZ00421 coronin; Provisional

Probab=99.48  E-value=4.6e-13  Score=107.41  Aligned_cols=99  Identities=19%  Similarity=0.312  Sum_probs=82.8

Q ss_pred             CCceeceEEEEEeeCCC-----CcceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCcceeeecccC
Q 041215            1 VGSIEGRVGVHHLDDSQ-----QSKNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQRLKAMSRC   74 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~-----~~~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~h   74 (136)
                      +||.||+|.+|.+....     ..++..+.+|..     .|.+++|+|++ .+|++++.|+.|++||+.++..+..+..|
T Consensus        93 SgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~-----~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h  167 (493)
T PTZ00421         93 TASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTK-----KVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCH  167 (493)
T ss_pred             EEeCCCEEEEEecCCCccccccCcceEEecCCCC-----cEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCC
Confidence            37889999995543221     245678889999     99999999986 79999999999999999999888899999


Q ss_pred             CCceeEEEEccCCCEEEEEEcccccccccc
Q 041215           75 GQPIPCSTFNTDGSIFAYSVCYDWSKGAEN  104 (136)
Q Consensus        75 ~~~v~~v~~sp~~~~l~s~~~dd~~~~~~~  104 (136)
                      ...|.+++|+|++.+|++++.|...+..+.
T Consensus       168 ~~~V~sla~spdG~lLatgs~Dg~IrIwD~  197 (493)
T PTZ00421        168 SDQITSLEWNLDGSLLCTTSKDKKLNIIDP  197 (493)
T ss_pred             CCceEEEEEECCCCEEEEecCCCEEEEEEC
Confidence            999999999999999999988876554443

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.47  E-value=1.3e-13  Score=105.64  Aligned_cols=116  Identities=19%  Similarity=0.240  Sum_probs=96.2

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS   81 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v   81 (136)
                      +|.||+|.|  ||-...++...+.+|.-     .|.+++|||...++++++.|..|++||..++.++.++..|...|..+
T Consensus       198 ~SdDg~iki--Wdf~~~kee~vL~GHgw-----dVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~  270 (464)
T KOG0284|consen  198 CSDDGTIKI--WDFRMPKEERVLRGHGW-----DVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAV  270 (464)
T ss_pred             ecCCCeEEE--EeccCCchhheeccCCC-----CcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEE
Confidence            688999999  55577788888888888     99999999999999999999999999999999999999999999999


Q ss_pred             EEccCCCEEEEEEccccccccccc-------CCCCCcceEEE--EcCCcccc
Q 041215           82 TFNTDGSIFAYSVCYDWSKGAENH-------NPATAKTYIYL--HLPQETEV  124 (136)
Q Consensus        82 ~~sp~~~~l~s~~~dd~~~~~~~~-------~~~~~~~~~~~--~~~~~~~~  124 (136)
                      .|+|++.+|++++.|--.+.++..       .+.|++....+  ||+.+..+
T Consensus       271 ~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lf  322 (464)
T KOG0284|consen  271 KFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLF  322 (464)
T ss_pred             EEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccce
Confidence            999999999999888765555443       33344433333  77776654

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=99.42  E-value=4.3e-13  Score=102.39  Aligned_cols=97  Identities=15%  Similarity=0.149  Sum_probs=86.5

Q ss_pred             CceeceEEEEEeeCC-CCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215            2 GSIEGRVGVHHLDDS-QQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC   80 (136)
Q Consensus         2 gs~dG~v~i~~~d~~-~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~   80 (136)
                      ||.|.++-+  |++. +.+++....+|+.     .|+.+.|+||++++++++.|..|++||..+|+-+..|++|-+.|..
T Consensus       342 gsDd~tlfl--W~p~~~kkpi~rmtgHq~-----lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYq  414 (480)
T KOG0271|consen  342 GSDDFTLFL--WNPFKSKKPITRMTGHQA-----LVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQ  414 (480)
T ss_pred             ecCCceEEE--ecccccccchhhhhchhh-----heeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEE
Confidence            677888766  7764 4557777789999     9999999999999999999999999999999999999999999999


Q ss_pred             EEEccCCCEEEEEEccccccccccc
Q 041215           81 STFNTDGSIFAYSVCYDWSKGAENH  105 (136)
Q Consensus        81 v~~sp~~~~l~s~~~dd~~~~~~~~  105 (136)
                      |+|+.|.++|++|+.|...+-++..
T Consensus       415 vawsaDsRLlVS~SkDsTLKvw~V~  439 (480)
T KOG0271|consen  415 VAWSADSRLLVSGSKDSTLKVWDVR  439 (480)
T ss_pred             EEeccCccEEEEcCCCceEEEEEee
Confidence            9999999999999999988766553

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=99.41  E-value=4.4e-13  Score=102.35  Aligned_cols=89  Identities=15%  Similarity=0.228  Sum_probs=83.3

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS   81 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v   81 (136)
                      ||-|..|++  ||.++++.+.+|.+|-.     +|-.++|+.|.++|++|+.|.++++|++.+.+..+.+++|.+.|.++
T Consensus       385 aSFDkSVkL--W~g~tGk~lasfRGHv~-----~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~v  457 (480)
T KOG0271|consen  385 ASFDKSVKL--WDGRTGKFLASFRGHVA-----AVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAV  457 (480)
T ss_pred             eecccceee--eeCCCcchhhhhhhccc-----eeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEE
Confidence            566777877  88899999999999999     99999999999999999999999999999999999999999999999


Q ss_pred             EEccCCCEEEEEEccc
Q 041215           82 TFNTDGSIFAYSVCYD   97 (136)
Q Consensus        82 ~~sp~~~~l~s~~~dd   97 (136)
                      .|+|||..+++|+.|-
T Consensus       458 DwspDG~rV~sggkdk  473 (480)
T KOG0271|consen  458 DWSPDGQRVASGGKDK  473 (480)
T ss_pred             EecCCCceeecCCCce
Confidence            9999999999987764

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.41  E-value=3e-12  Score=101.88  Aligned_cols=97  Identities=24%  Similarity=0.338  Sum_probs=85.2

Q ss_pred             CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcc--eeeecccCCC--
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQ--RLKAMSRCGQ--   76 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~--~~~~~~~h~~--   76 (136)
                      +||.|++|+|  ||.++++....|.+|..     .|++++|++++++|++++.|+.|++||+.++.  ++..+..+..  
T Consensus       263 Sgs~D~tvri--Wd~~~~~~~~~l~~hs~-----~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~  335 (456)
T KOG0266|consen  263 SGSDDGTVRI--WDVRTGECVRKLKGHSD-----GISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSA  335 (456)
T ss_pred             EecCCCcEEE--EeccCCeEEEeeeccCC-----ceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCC
Confidence            3789999999  88888999999999999     99999999999999999999999999999998  5677777643  


Q ss_pred             ceeEEEEccCCCEEEEEEcccccccccc
Q 041215           77 PIPCSTFNTDGSIFAYSVCYDWSKGAEN  104 (136)
Q Consensus        77 ~v~~v~~sp~~~~l~s~~~dd~~~~~~~  104 (136)
                      ++++++|+|++.+++++..|.+.+..+.
T Consensus       336 ~~~~~~fsp~~~~ll~~~~d~~~~~w~l  363 (456)
T KOG0266|consen  336 PVTSVQFSPNGKYLLSASLDRTLKLWDL  363 (456)
T ss_pred             ceeEEEECCCCcEEEEecCCCeEEEEEc
Confidence            5999999999999999888866655433

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.39  E-value=4.5e-12  Score=93.36  Aligned_cols=91  Identities=14%  Similarity=0.223  Sum_probs=78.2

Q ss_pred             CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccC--CCce
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRC--GQPI   78 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h--~~~v   78 (136)
                      .||+||++++  ||..+++....|.+|..     .|.+++|+++.+.+++|+.|.+|.+||+... +..++..+  .++|
T Consensus        80 S~swD~~lrl--WDl~~g~~t~~f~GH~~-----dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WV  151 (315)
T KOG0279|consen   80 SASWDGTLRL--WDLATGESTRRFVGHTK-----DVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWV  151 (315)
T ss_pred             eccccceEEE--EEecCCcEEEEEEecCC-----ceEEEEecCCCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcE
Confidence            3789999999  88888899999999999     9999999999999999999999999998754 55565554  7999


Q ss_pred             eEEEEccC--CCEEEEEEccccc
Q 041215           79 PCSTFNTD--GSIFAYSVCYDWS   99 (136)
Q Consensus        79 ~~v~~sp~--~~~l~s~~~dd~~   99 (136)
                      +|++|+|.  ..++++++-|-..
T Consensus       152 scvrfsP~~~~p~Ivs~s~Dktv  174 (315)
T KOG0279|consen  152 SCVRFSPNESNPIIVSASWDKTV  174 (315)
T ss_pred             EEEEEcCCCCCcEEEEccCCceE
Confidence            99999998  5688877666543

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.37  E-value=4.5e-12  Score=93.36  Aligned_cols=94  Identities=15%  Similarity=0.140  Sum_probs=84.0

Q ss_pred             CceeceEEEEEeeC---CCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCce
Q 041215            2 GSIEGRVGVHHLDD---SQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPI   78 (136)
Q Consensus         2 gs~dG~v~i~~~d~---~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v   78 (136)
                      +|.|.++.+|.+.-   ..+.+...|.+|..     .|..+.++++|++.++++.|+++++||+.+++..++|.+|...|
T Consensus        34 asrDk~ii~W~L~~dd~~~G~~~r~~~GHsH-----~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dV  108 (315)
T KOG0279|consen   34 ASRDKTIIVWKLTSDDIKYGVPVRRLTGHSH-----FVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDV  108 (315)
T ss_pred             cccceEEEEEEeccCccccCceeeeeeccce-----EecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCce
Confidence            67888888866533   45777899999999     99999999999999999999999999999999999999999999


Q ss_pred             eEEEEccCCCEEEEEEcccccc
Q 041215           79 PCSTFNTDGSIFAYSVCYDWSK  100 (136)
Q Consensus        79 ~~v~~sp~~~~l~s~~~dd~~~  100 (136)
                      .+++|+++.+.+++|+-|...+
T Consensus       109 lsva~s~dn~qivSGSrDkTik  130 (315)
T KOG0279|consen  109 LSVAFSTDNRQIVSGSRDKTIK  130 (315)
T ss_pred             EEEEecCCCceeecCCCcceee
Confidence            9999999999999998877543

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.37  E-value=4.4e-12  Score=96.62  Aligned_cols=91  Identities=20%  Similarity=0.326  Sum_probs=74.9

Q ss_pred             CCceeceEEEEEeeCCCC--cceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCC---cceeeecccCC
Q 041215            1 VGSIEGRVGVHHLDDSQQ--SKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDS---KQRLKAMSRCG   75 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~--~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~---~~~~~~~~~h~   75 (136)
                      .||.||+|+|  ||.+.+  +.....+.|.+     .|+-|+|+....+|++|++||+++|||+++   +..+.+|..|.
T Consensus       275 ScS~DgsIrI--WDiRs~~~~~~~~~kAh~s-----DVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk  347 (440)
T KOG0302|consen  275 SCSCDGSIRI--WDIRSGPKKAAVSTKAHNS-----DVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHK  347 (440)
T ss_pred             eeecCceEEE--EEecCCCccceeEeeccCC-----ceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEecc
Confidence            3789999999  666654  44555588999     999999998888999999999999999875   56788999999


Q ss_pred             CceeEEEEccCCC-EEEEEEcccc
Q 041215           76 QPIPCSTFNTDGS-IFAYSVCYDW   98 (136)
Q Consensus        76 ~~v~~v~~sp~~~-~l~s~~~dd~   98 (136)
                      .+|+||.|+|... .|++++.|+.
T Consensus       348 ~pItsieW~p~e~s~iaasg~D~Q  371 (440)
T KOG0302|consen  348 APITSIEWHPHEDSVIAASGEDNQ  371 (440)
T ss_pred             CCeeEEEeccccCceEEeccCCCc
Confidence            9999999999765 5555555553

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.36  E-value=2.8e-12  Score=93.90  Aligned_cols=87  Identities=24%  Similarity=0.381  Sum_probs=78.4

Q ss_pred             ceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEcc
Q 041215            6 GRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNT   85 (136)
Q Consensus         6 G~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp   85 (136)
                      |.|.|  +.-...++..+++.|..     .+-||.|+|+|++|++|+.|-.+.+||++..-++..++.+.-+|+.++||.
T Consensus       169 G~v~I--LsypsLkpv~si~AH~s-----nCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~  241 (313)
T KOG1407|consen  169 GCVEI--LSYPSLKPVQSIKAHPS-----NCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSH  241 (313)
T ss_pred             ceEEE--EeccccccccccccCCc-----ceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEecc
Confidence            45555  44467889999999999     999999999999999999999999999999889999999999999999999


Q ss_pred             CCCEEEEEEccccc
Q 041215           86 DGSIFAYSVCYDWS   99 (136)
Q Consensus        86 ~~~~l~s~~~dd~~   99 (136)
                      +|++||+|+.|-+.
T Consensus       242 dg~~lASaSEDh~I  255 (313)
T KOG1407|consen  242 DGRMLASASEDHFI  255 (313)
T ss_pred             CcceeeccCccceE
Confidence            99999999887653

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.35  E-value=4.3e-12  Score=96.21  Aligned_cols=94  Identities=17%  Similarity=0.188  Sum_probs=83.3

Q ss_pred             CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC   80 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~   80 (136)
                      +|+.||+|.|  ||.......+.+ .|..     .|..+.|-+ ..+|+++..+|.|++||.++|+++.++.+|...|.+
T Consensus       303 ~G~vdG~i~i--yD~a~~~~R~~c-~he~-----~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~  373 (399)
T KOG0296|consen  303 CGSVDGTIAI--YDLAASTLRHIC-EHED-----GVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILD  373 (399)
T ss_pred             cccccceEEE--Eecccchhheec-cCCC-----ceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeE
Confidence            5899999999  776666666665 4888     999999998 788999999999999999999999999999999999


Q ss_pred             EEEccCCCEEEEEEccccccccc
Q 041215           81 STFNTDGSIFAYSVCYDWSKGAE  103 (136)
Q Consensus        81 v~~sp~~~~l~s~~~dd~~~~~~  103 (136)
                      ++++|+.++++|++.|.-++-|.
T Consensus       374 f~ls~~~~~vvT~s~D~~a~VF~  396 (399)
T KOG0296|consen  374 FALSPQKRLVVTVSDDNTALVFE  396 (399)
T ss_pred             EEEcCCCcEEEEecCCCeEEEEe
Confidence            99999999999999988776554

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.34  E-value=9.8e-12  Score=96.85  Aligned_cols=89  Identities=21%  Similarity=0.422  Sum_probs=70.8

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeC-------------------
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDK-------------------   62 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~-------------------   62 (136)
                      .+.||.|.++..  ....+..++.+|.+     +|+++.|+|.+.+|+++++|+++++|+.                   
T Consensus       335 s~td~~i~V~kv--~~~~P~~t~~GH~g-----~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~  407 (524)
T KOG0273|consen  335 SSTDGCIHVCKV--GEDRPVKTFIGHHG-----EVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTI  407 (524)
T ss_pred             cCCCceEEEEEe--cCCCcceeeecccC-----ceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeE
Confidence            467888888555  44578888899999     9999999999999999999998888853                   


Q ss_pred             --------------------------------CCcceeeecccCCCceeEEEEccCCCEEEEEEccc
Q 041215           63 --------------------------------DSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYD   97 (136)
Q Consensus        63 --------------------------------~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd   97 (136)
                                                      ..+.+++.|..|..+|.+++|+|+++++|+|+-|.
T Consensus       408 ~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg  474 (524)
T KOG0273|consen  408 KWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDG  474 (524)
T ss_pred             eecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCC
Confidence                                            33344556667888888888888888888876654

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.34  E-value=1.9e-12  Score=104.17  Aligned_cols=103  Identities=18%  Similarity=0.301  Sum_probs=89.1

Q ss_pred             CCceeceEEEEEeeCC-----CCcceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCcceeeecccC
Q 041215            1 VGSIEGRVGVHHLDDS-----QQSKNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQRLKAMSRC   74 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~-----~~~~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~h   74 (136)
                      ||..||.|.+|.+.+.     ...+...+..|..     .|..+.|||.. ..|++++.|.+|++||+.++.....+.+|
T Consensus       645 Va~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~e-----KI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gH  719 (1012)
T KOG1445|consen  645 VATDDGQINLWRLTANGLPENEMTPEKILTIHGE-----KITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGH  719 (1012)
T ss_pred             ecccCceEEEEEeccCCCCcccCCcceeeecccc-----eEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccC
Confidence            6789999999888764     3456678899999     99999999988 78999999999999999999888899999


Q ss_pred             CCceeEEEEccCCCEEEEEEcccccccccccCCC
Q 041215           75 GQPIPCSTFNTDGSIFAYSVCYDWSKGAENHNPA  108 (136)
Q Consensus        75 ~~~v~~v~~sp~~~~l~s~~~dd~~~~~~~~~~~  108 (136)
                      .+.|..++|||+|+.+|+.+.|.-..-+.-...+
T Consensus       720 tdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e  753 (1012)
T KOG1445|consen  720 TDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSRE  753 (1012)
T ss_pred             cCceeEEEECCCCcceeeeecCceEEEeCCCCCC
Confidence            9999999999999999999999876544433333

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.34  E-value=3.7e-12  Score=96.70  Aligned_cols=98  Identities=13%  Similarity=0.190  Sum_probs=89.8

Q ss_pred             CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC   80 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~   80 (136)
                      .||.|+++.|  ||..+++...++.+|..     .|..+++++...++++++.|+.|++||++..+.+..+.+|.+.|.|
T Consensus       168 tgs~DrtikI--wDlatg~LkltltGhi~-----~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~  240 (460)
T KOG0285|consen  168 TGSADRTIKI--WDLATGQLKLTLTGHIE-----TVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYC  240 (460)
T ss_pred             ecCCCceeEE--EEcccCeEEEeecchhh-----eeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEE
Confidence            3789999988  88899999999999999     9999999999999999999999999999999999999999999999


Q ss_pred             EEEccCCCEEEEEEccccccccccc
Q 041215           81 STFNTDGSIFAYSVCYDWSKGAENH  105 (136)
Q Consensus        81 v~~sp~~~~l~s~~~dd~~~~~~~~  105 (136)
                      ++.+|.-+.+++|+.|...+.-++.
T Consensus       241 L~lhPTldvl~t~grDst~RvWDiR  265 (460)
T KOG0285|consen  241 LDLHPTLDVLVTGGRDSTIRVWDIR  265 (460)
T ss_pred             EeccccceeEEecCCcceEEEeeec
Confidence            9999999999999998866544443

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.33  E-value=9.6e-12  Score=90.84  Aligned_cols=76  Identities=18%  Similarity=0.255  Sum_probs=65.9

Q ss_pred             CCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeec-ccCCCceeEEEEccCCCEEEEEEccccccccccc
Q 041215           30 GSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAM-SRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAENH  105 (136)
Q Consensus        30 ~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~-~~h~~~v~~v~~sp~~~~l~s~~~dd~~~~~~~~  105 (136)
                      ..-++.|.+.+++|+...+++|+.|..++.||+.++..+..+ .+|.++|+||.|+|+|...++|+.|+...+-+..
T Consensus       221 ~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~  297 (334)
T KOG0278|consen  221 YKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTT  297 (334)
T ss_pred             ccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEec
Confidence            345567889999999999999999999999999999888876 8999999999999999999999888876544443

>PTZ00420 coronin; Provisional

Probab=99.33  E-value=2.1e-11  Score=99.06  Aligned_cols=97  Identities=14%  Similarity=0.342  Sum_probs=75.4

Q ss_pred             CCceeceEEEEEeeCCC------CcceeEEEeeeCCCCccceeEEEEeCCCC-EEEEEcCCCcEEEEeCCCcceeeeccc
Q 041215            1 VGSIEGRVGVHHLDDSQ------QSKNFTFKCHRDGSEIYSVNSLNFHPIHH-TFATAGSDGAFNFWDKDSKQRLKAMSR   73 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~------~~~~~~l~~h~~~~~~~~v~~l~~~p~~~-~l~s~~~dg~v~vwd~~~~~~~~~~~~   73 (136)
                      +||.||+|++|.+....      ..+...+.+|..     .|.+++|+|++. .|++++.|+.|++||+.++..+..+. 
T Consensus        92 SgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~-----~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-  165 (568)
T PTZ00420         92 SGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKK-----KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-  165 (568)
T ss_pred             EEeCCCeEEEEECCCCCccccccccceEEeecCCC-----cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-
Confidence            37889999995442211      123456788988     999999999986 46799999999999999988777664 


Q ss_pred             CCCceeEEEEccCCCEEEEEEccccccccc
Q 041215           74 CGQPIPCSTFNTDGSIFAYSVCYDWSKGAE  103 (136)
Q Consensus        74 h~~~v~~v~~sp~~~~l~s~~~dd~~~~~~  103 (136)
                      |...|.+++|+|+|.+|++++.|.....++
T Consensus       166 ~~~~V~SlswspdG~lLat~s~D~~IrIwD  195 (568)
T PTZ00420        166 MPKKLSSLKWNIKGNLLSGTCVGKHMHIID  195 (568)
T ss_pred             cCCcEEEEEECCCCCEEEEEecCCEEEEEE
Confidence            567899999999999999887776444443

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.30  E-value=1.9e-11  Score=90.74  Aligned_cols=91  Identities=23%  Similarity=0.330  Sum_probs=79.3

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccC--CCcee
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRC--GQPIP   79 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h--~~~v~   79 (136)
                      |+.|+.-.+  ||.+.+....+|.+|.+     .|++++|+|+|..+++|++|++.++||++..+.+..+...  ..+|+
T Consensus       205 g~cD~~akl--WD~R~~~c~qtF~ghes-----DINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~git  277 (343)
T KOG0286|consen  205 GGCDKSAKL--WDVRSGQCVQTFEGHES-----DINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGIT  277 (343)
T ss_pred             cccccceee--eeccCcceeEeeccccc-----ccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCce
Confidence            677888776  89999999999999999     9999999999999999999999999999998777777533  58999


Q ss_pred             EEEEccCCCEEEEEEcccccc
Q 041215           80 CSTFNTDGSIFAYSVCYDWSK  100 (136)
Q Consensus        80 ~v~~sp~~~~l~s~~~dd~~~  100 (136)
                      +|+||..|++|..| .+|+.-
T Consensus       278 Sv~FS~SGRlLfag-y~d~~c  297 (343)
T KOG0286|consen  278 SVAFSKSGRLLFAG-YDDFTC  297 (343)
T ss_pred             eEEEcccccEEEee-ecCCce
Confidence            99999999999976 555443

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.30  E-value=2e-11  Score=89.77  Aligned_cols=105  Identities=13%  Similarity=0.169  Sum_probs=94.8

Q ss_pred             CCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcce-eeecccCCCceeEEEEccCCCEEEEEEc
Q 041215           17 QQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQR-LKAMSRCGQPIPCSTFNTDGSIFAYSVC   95 (136)
Q Consensus        17 ~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~-~~~~~~h~~~v~~v~~sp~~~~l~s~~~   95 (136)
                      ...+...+.++.+     .++.+-|.|.+.+|++|..+|.|.+||+.++.. +.....|...|+.|+++++..++++++.
T Consensus       136 s~ep~~kI~t~~s-----kit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~  210 (327)
T KOG0643|consen  136 SEEPYLKIPTPDS-----KITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSK  210 (327)
T ss_pred             ccCceEEecCCcc-----ceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEeccc
Confidence            3455777777888     999999999999999999999999999999744 5566789999999999999999999999


Q ss_pred             ccccccccccCCCCCcceEEEEcCCcccccc
Q 041215           96 YDWSKGAENHNPATAKTYIYLHLPQETEVKG  126 (136)
Q Consensus        96 dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (136)
                      |..++++++...+..+.+...+||+.+...|
T Consensus       211 Dttakl~D~~tl~v~Kty~te~PvN~aaisP  241 (327)
T KOG0643|consen  211 DTTAKLVDVRTLEVLKTYTTERPVNTAAISP  241 (327)
T ss_pred             CccceeeeccceeeEEEeeecccccceeccc
Confidence            9999999999999899999999999998887

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.30  E-value=8.2e-12  Score=101.85  Aligned_cols=101  Identities=20%  Similarity=0.335  Sum_probs=88.3

Q ss_pred             CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCC-cceeeecccCCCce
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDS-KQRLKAMSRCGQPI   78 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~-~~~~~~~~~h~~~v   78 (136)
                      .||.||+|.+  ||.+..+...++.+...     .|..+.|+|.. ..++++.+.|.+.+||++. ..+...+.+|.++|
T Consensus       151 SGSQDg~vK~--~DlR~~~S~~t~~~nSE-----SiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV  223 (839)
T KOG0269|consen  151 SGSQDGTVKC--WDLRSKKSKSTFRSNSE-----SIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPV  223 (839)
T ss_pred             ecCCCceEEE--Eeeecccccccccccch-----hhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCce
Confidence            4899999988  78788888888888878     89999999876 7899999999999999986 46678889999999


Q ss_pred             eEEEEccCCCEEEEEEcccccccccccCCC
Q 041215           79 PCSTFNTDGSIFAYSVCYDWSKGAENHNPA  108 (136)
Q Consensus        79 ~~v~~sp~~~~l~s~~~dd~~~~~~~~~~~  108 (136)
                      .|+.|+|++.+||||+-|-..+.-+|+.+.
T Consensus       224 ~c~nwhPnr~~lATGGRDK~vkiWd~t~~~  253 (839)
T KOG0269|consen  224 LCLNWHPNREWLATGGRDKMVKIWDMTDSR  253 (839)
T ss_pred             EEEeecCCCceeeecCCCccEEEEeccCCC
Confidence            999999999999999998888777777555

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.30  E-value=7.1e-12  Score=100.57  Aligned_cols=92  Identities=17%  Similarity=0.256  Sum_probs=84.2

Q ss_pred             CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCC--CEEEEEcCCCcEEEEeCCCcceeeecccCCCce
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIH--HTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPI   78 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~--~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v   78 (136)
                      .||.|++|.+|.+  ....+.++|.+|..     .|+|++|-+-|  .+|++|++|..+++||+++..|++++.+|...|
T Consensus       158 S~sLDrTVKVWsl--gs~~~nfTl~gHek-----GVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nv  230 (794)
T KOG0276|consen  158 SASLDRTVKVWSL--GSPHPNFTLEGHEK-----GVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNV  230 (794)
T ss_pred             eeeccccEEEEEc--CCCCCceeeecccc-----CcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccc
Confidence            3789999999555  77889999999999     99999997766  699999999999999999999999999999999


Q ss_pred             eEEEEccCCCEEEEEEccccc
Q 041215           79 PCSTFNTDGSIFAYSVCYDWS   99 (136)
Q Consensus        79 ~~v~~sp~~~~l~s~~~dd~~   99 (136)
                      ..+.|+|.=.++++|+.|+..
T Consensus       231 s~v~fhp~lpiiisgsEDGTv  251 (794)
T KOG0276|consen  231 SFVFFHPELPIIISGSEDGTV  251 (794)
T ss_pred             eEEEecCCCcEEEEecCCccE
Confidence            999999999999999988843

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.30  E-value=1.9e-11  Score=99.95  Aligned_cols=116  Identities=16%  Similarity=0.305  Sum_probs=89.7

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC   80 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~   80 (136)
                      +|+|.+|++  |++.....+..|. |..     =|+|++|+|.. +++++|+-|+.|+||++...+++..... ..-|++
T Consensus       386 SSMDKTVRL--Wh~~~~~CL~~F~-Hnd-----fVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl-~~lITA  456 (712)
T KOG0283|consen  386 SSMDKTVRL--WHPGRKECLKVFS-HND-----FVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDL-RDLITA  456 (712)
T ss_pred             ccccccEEe--ecCCCcceeeEEe-cCC-----eeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhh-hhhhee
Confidence            689999999  6667778888876 777     99999999988 8999999999999999998877666644 489999


Q ss_pred             EEEccCCCEEEEEEcccccccccccCCCCCcceEEEEcCCcccccccCCCCCCCC
Q 041215           81 STFNTDGSIFAYSVCYDWSKGAENHNPATAKTYIYLHLPQETEVKGKPRAGTSGR  135 (136)
Q Consensus        81 v~~sp~~~~l~s~~~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (136)
                      |+|.|+|+..+.|+-++.=.-+..  ..       +.++++.++.-+++|+..|+
T Consensus       457 vcy~PdGk~avIGt~~G~C~fY~t--~~-------lk~~~~~~I~~~~~Kk~~~~  502 (712)
T KOG0283|consen  457 VCYSPDGKGAVIGTFNGYCRFYDT--EG-------LKLVSDFHIRLHNKKKKQGK  502 (712)
T ss_pred             EEeccCCceEEEEEeccEEEEEEc--cC-------CeEEEeeeEeeccCccccCc
Confidence            999999999998877665422211  11       44555556655666555554

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.29  E-value=1.8e-11  Score=99.43  Aligned_cols=93  Identities=17%  Similarity=0.200  Sum_probs=86.4

Q ss_pred             CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC   80 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~   80 (136)
                      .||.|.+..||.+  .......+|.+|+.     .|+++.|+|..+.++++|.|.+|+||.+.+..++.+|.+|.+.|..
T Consensus       480 T~SqDktaKiW~l--e~~~l~~vLsGH~R-----Gvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlr  552 (775)
T KOG0319|consen  480 TGSQDKTAKIWDL--EQLRLLGVLSGHTR-----GVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLR  552 (775)
T ss_pred             ecccccceeeecc--cCceEEEEeeCCcc-----ceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEe
Confidence            3799999999555  57788999999999     9999999999999999999999999999999999999999999999


Q ss_pred             EEEccCCCEEEEEEcccccc
Q 041215           81 STFNTDGSIFAYSVCYDWSK  100 (136)
Q Consensus        81 v~~sp~~~~l~s~~~dd~~~  100 (136)
                      ++|-.++..|++|+.|+-.+
T Consensus       553 a~F~~~~~qliS~~adGliK  572 (775)
T KOG0319|consen  553 ASFIRNGKQLISAGADGLIK  572 (775)
T ss_pred             eeeeeCCcEEEeccCCCcEE
Confidence            99999999999999988554

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.28  E-value=1.3e-11  Score=93.85  Aligned_cols=91  Identities=14%  Similarity=0.282  Sum_probs=85.7

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS   81 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v   81 (136)
                      |+.|.++++  ||.++..+.+++.+|++     +|..+.+.|-..-+++|+-|++|++||+..++...++..|...|.++
T Consensus       253 ~grDst~Rv--WDiRtr~~V~~l~GH~~-----~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral  325 (460)
T KOG0285|consen  253 GGRDSTIRV--WDIRTRASVHVLSGHTN-----PVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRAL  325 (460)
T ss_pred             cCCcceEEE--eeecccceEEEecCCCC-----cceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEE
Confidence            788999999  88899999999999999     99999999888889999999999999999999999999999999999


Q ss_pred             EEccCCCEEEEEEccccc
Q 041215           82 TFNTDGSIFAYSVCYDWS   99 (136)
Q Consensus        82 ~~sp~~~~l~s~~~dd~~   99 (136)
                      +.+|....||+++.|++.
T Consensus       326 ~lhP~e~~fASas~dnik  343 (460)
T KOG0285|consen  326 CLHPKENLFASASPDNIK  343 (460)
T ss_pred             ecCCchhhhhccCCccce
Confidence            999999999999998864

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.28  E-value=3.6e-11  Score=94.84  Aligned_cols=92  Identities=23%  Similarity=0.336  Sum_probs=82.2

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecc---cCCCce
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMS---RCGQPI   78 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~---~h~~~v   78 (136)
                      ||.|.++.+  |+-..-+-..++..|..     -|.|++|+|||.++++++.||.+.+||-.+++.+.++.   +|.+.|
T Consensus       166 ~sdDn~v~f--feGPPFKFk~s~r~Hsk-----FV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsI  238 (603)
T KOG0318|consen  166 GSDDNTVAF--FEGPPFKFKSSFREHSK-----FVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSI  238 (603)
T ss_pred             ccCCCeEEE--eeCCCeeeeeccccccc-----ceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccE
Confidence            677888877  87777777788888888     99999999999999999999999999999999999987   799999


Q ss_pred             eEEEEccCCCEEEEEEcccccc
Q 041215           79 PCSTFNTDGSIFAYSVCYDWSK  100 (136)
Q Consensus        79 ~~v~~sp~~~~l~s~~~dd~~~  100 (136)
                      ..++|+||+..++|++.|-..+
T Consensus       239 falsWsPDs~~~~T~SaDkt~K  260 (603)
T KOG0318|consen  239 FALSWSPDSTQFLTVSADKTIK  260 (603)
T ss_pred             EEEEECCCCceEEEecCCceEE
Confidence            9999999999999988766443

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.23  E-value=6.2e-11  Score=90.01  Aligned_cols=89  Identities=12%  Similarity=0.207  Sum_probs=77.0

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCC---------------CEEEEEcCCCcEEEEeCCCcc
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIH---------------HTFATAGSDGAFNFWDKDSKQ   66 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~---------------~~l~s~~~dg~v~vwd~~~~~   66 (136)
                      +|.|-++++|.+  .+......+..|.-     +|.|++|-|..               +++++++.|++|++||+.+++
T Consensus       253 ~s~dqtl~vW~~--~t~~~k~~lR~hEh-----~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~  325 (406)
T KOG0295|consen  253 CSNDQTLRVWVV--ATKQCKAELREHEH-----PVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGM  325 (406)
T ss_pred             cCCCceEEEEEe--ccchhhhhhhcccc-----ceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCe
Confidence            677888888666  55666777788888     99999997653               379999999999999999999


Q ss_pred             eeeecccCCCceeEEEEccCCCEEEEEEccc
Q 041215           67 RLKAMSRCGQPIPCSTFNTDGSIFAYSVCYD   97 (136)
Q Consensus        67 ~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd   97 (136)
                      ++.++.+|..+|..++|+|.|++++++..|-
T Consensus       326 cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDk  356 (406)
T KOG0295|consen  326 CLFTLVGHDNWVRGVAFSPGGKYILSCADDK  356 (406)
T ss_pred             EEEEEecccceeeeeEEcCCCeEEEEEecCC
Confidence            9999999999999999999999999887655

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.23  E-value=9.3e-11  Score=90.82  Aligned_cols=91  Identities=22%  Similarity=0.279  Sum_probs=76.6

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS   81 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v   81 (136)
                      +|.||....  .|.+++..+.......+   ...+++..|||||..|.+|..|+.|++||+.+...+..|.+|.++|..|
T Consensus       321 As~d~~w~F--sd~~~g~~lt~vs~~~s---~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i  395 (506)
T KOG0289|consen  321 ASNDGTWAF--SDISSGSQLTVVSDETS---DVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAI  395 (506)
T ss_pred             ecCCceEEE--EEccCCcEEEEEeeccc---cceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEE
Confidence            567777765  66677777666543212   1157899999999999999999999999999999999999999999999


Q ss_pred             EEccCCCEEEEEEccc
Q 041215           82 TFNTDGSIFAYSVCYD   97 (136)
Q Consensus        82 ~~sp~~~~l~s~~~dd   97 (136)
                      +|+.+|.++++++.|+
T Consensus       396 ~FsENGY~Lat~add~  411 (506)
T KOG0289|consen  396 SFSENGYWLATAADDG  411 (506)
T ss_pred             EeccCceEEEEEecCC
Confidence            9999999999998888

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.23  E-value=8.5e-11  Score=95.99  Aligned_cols=92  Identities=20%  Similarity=0.295  Sum_probs=78.2

Q ss_pred             ceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEE
Q 041215            3 SIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCST   82 (136)
Q Consensus         3 s~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~   82 (136)
                      +.=|.+.+|.|..  ..-....++|-.     .+++++++|||+++++|+.||.|++||..++-|..+|..|.+.|+.++
T Consensus       327 ~klgQLlVweWqs--EsYVlKQQgH~~-----~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~  399 (893)
T KOG0291|consen  327 SKLGQLLVWEWQS--ESYVLKQQGHSD-----RITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQ  399 (893)
T ss_pred             CccceEEEEEeec--cceeeecccccc-----ceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEE
Confidence            3346778877733  333444467888     999999999999999999999999999999999999999999999999


Q ss_pred             EccCCCEEEEEEccccccc
Q 041215           83 FNTDGSIFAYSVCYDWSKG  101 (136)
Q Consensus        83 ~sp~~~~l~s~~~dd~~~~  101 (136)
                      |+..++.+++++-|+.-+.
T Consensus       400 f~~~g~~llssSLDGtVRA  418 (893)
T KOG0291|consen  400 FTARGNVLLSSSLDGTVRA  418 (893)
T ss_pred             EEecCCEEEEeecCCeEEe
Confidence            9999999999988885443

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.22  E-value=3.8e-11  Score=87.76  Aligned_cols=100  Identities=19%  Similarity=0.326  Sum_probs=87.0

Q ss_pred             CceeceEEEEEeeC-CCCcceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCcceeeecccCCCcee
Q 041215            2 GSIEGRVGVHHLDD-SQQSKNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIP   79 (136)
Q Consensus         2 gs~dG~v~i~~~d~-~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~   79 (136)
                      ++-||+++|  ||. ....++..|+.|..     .|-++.|++-- ..+++++.|++|++|+......+.++.+|...|.
T Consensus        79 a~GDGSLrl--~d~~~~s~Pi~~~kEH~~-----EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy  151 (311)
T KOG0277|consen   79 ASGDGSLRL--FDLTMPSKPIHKFKEHKR-----EVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIY  151 (311)
T ss_pred             EecCceEEE--eccCCCCcchhHHHhhhh-----heEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEE
Confidence            567899988  664 35678899999999     99999998776 5677789999999999999999999999999999


Q ss_pred             EEEEccC-CCEEEEEEcccccccccccCCC
Q 041215           80 CSTFNTD-GSIFAYSVCYDWSKGAENHNPA  108 (136)
Q Consensus        80 ~v~~sp~-~~~l~s~~~dd~~~~~~~~~~~  108 (136)
                      ...|+|. +.+++++++|.+.+..+...|-
T Consensus       152 ~a~~sp~~~nlfas~Sgd~~l~lwdvr~~g  181 (311)
T KOG0277|consen  152 QAAFSPHIPNLFASASGDGTLRLWDVRSPG  181 (311)
T ss_pred             EEecCCCCCCeEEEccCCceEEEEEecCCC
Confidence            9999996 5699999999999988877664

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.21  E-value=1.1e-10  Score=92.18  Aligned_cols=103  Identities=17%  Similarity=0.235  Sum_probs=82.2

Q ss_pred             CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCccee-eecccCCCcee
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRL-KAMSRCGQPIP   79 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~-~~~~~h~~~v~   79 (136)
                      ||..||.+.++.+..........+..|++     +|++++|+|++.+|+++...+.+-+||+.+++.. ..+.-|.+.|+
T Consensus       460 VGG~Dgkvhvysl~g~~l~ee~~~~~h~a-----~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~  534 (603)
T KOG0318|consen  460 VGGQDGKVHVYSLSGDELKEEAKLLEHRA-----AITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKIN  534 (603)
T ss_pred             EecccceEEEEEecCCcccceeeeecccC-----CceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEE
Confidence            57889999886665544455556667899     9999999999999999999999999999987663 33445999999


Q ss_pred             EEEEccCCCEEEEEEcccccccccccCCC
Q 041215           80 CSTFNTDGSIFAYSVCYDWSKGAENHNPA  108 (136)
Q Consensus        80 ~v~~sp~~~~l~s~~~dd~~~~~~~~~~~  108 (136)
                      ||+|+|+..++|||+-|.-.-...+.-|.
T Consensus       535 ~~aWsP~n~~vATGSlDt~Viiysv~kP~  563 (603)
T KOG0318|consen  535 CVAWSPNNKLVATGSLDTNVIIYSVKKPA  563 (603)
T ss_pred             EEEeCCCceEEEeccccceEEEEEccChh
Confidence            99999999999999887754334444444

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.21  E-value=1.3e-10  Score=86.63  Aligned_cols=90  Identities=18%  Similarity=0.283  Sum_probs=73.2

Q ss_pred             CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC   80 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~   80 (136)
                      .||+||+|++|.+.............|.+     +|.+++|+-+|..+++++.|+.+++||+.+++ +.++-.|.++|.+
T Consensus        45 A~SWD~tVR~wevq~~g~~~~ka~~~~~~-----PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt  118 (347)
T KOG0647|consen   45 AGSWDGTVRIWEVQNSGQLVPKAQQSHDG-----PVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKT  118 (347)
T ss_pred             ecccCCceEEEEEecCCcccchhhhccCC-----CeEEEEEccCCceEEeeccCCceEEEEccCCC-eeeeeecccceeE
Confidence            47999999997765542333355567888     99999999999999999999999999999985 5677799999999


Q ss_pred             EEEccCCC--EEEEEEccc
Q 041215           81 STFNTDGS--IFAYSVCYD   97 (136)
Q Consensus        81 v~~sp~~~--~l~s~~~dd   97 (136)
                      +.|-+...  .|+|| ++|
T Consensus       119 ~~wv~~~~~~cl~TG-SWD  136 (347)
T KOG0647|consen  119 CHWVPGMNYQCLVTG-SWD  136 (347)
T ss_pred             EEEecCCCcceeEec-ccc
Confidence            99987665  67765 444

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.21  E-value=9.6e-11  Score=90.58  Aligned_cols=90  Identities=18%  Similarity=0.323  Sum_probs=75.2

Q ss_pred             CceeceEEEEEeeCC--CCcceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCC-cceeeecccCCCc
Q 041215            2 GSIEGRVGVHHLDDS--QQSKNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDS-KQRLKAMSRCGQP   77 (136)
Q Consensus         2 gs~dG~v~i~~~d~~--~~~~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~-~~~~~~~~~h~~~   77 (136)
                      ++.|+.+.|  ||.+  +.++.....+|.+     .|+|++|+|.+ ..|++++.|++|.+||+++ ...++.+.+|.+.
T Consensus       246 v~dd~~L~i--wD~R~~~~~~~~~~~ah~~-----~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~de  318 (422)
T KOG0264|consen  246 VGDDGKLMI--WDTRSNTSKPSHSVKAHSA-----EVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDE  318 (422)
T ss_pred             ecCCCeEEE--EEcCCCCCCCcccccccCC-----ceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcc
Confidence            355777776  8888  5677778889999     99999999988 6899999999999999987 4568999999999


Q ss_pred             eeEEEEccCCC-EEEEEEcccc
Q 041215           78 IPCSTFNTDGS-IFAYSVCYDW   98 (136)
Q Consensus        78 v~~v~~sp~~~-~l~s~~~dd~   98 (136)
                      |.+|.|+|+.. .||+++.|..
T Consensus       319 v~~V~WSPh~etvLASSg~D~r  340 (422)
T KOG0264|consen  319 VFQVEWSPHNETVLASSGTDRR  340 (422)
T ss_pred             eEEEEeCCCCCceeEecccCCc
Confidence            99999999865 6666665553

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.20  E-value=6.8e-11  Score=85.79  Aligned_cols=94  Identities=16%  Similarity=0.174  Sum_probs=84.6

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS   81 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v   81 (136)
                      +..|.++++  |++..+..++++.+|..     .|..++.+.|...+++|+.|..+.+||+.+|+.+..+.+|.++|+.|
T Consensus        35 cGsdrtvrL--WNp~rg~liktYsghG~-----EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV  107 (307)
T KOG0316|consen   35 CGSDRTVRL--WNPLRGALIKTYSGHGH-----EVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTV  107 (307)
T ss_pred             cCCCceEEe--ecccccceeeeecCCCc-----eeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEE
Confidence            345888887  88899999999999999     99999999999999999999999999999999999999999999999


Q ss_pred             EEccCCCEEEEEEcccccccc
Q 041215           82 TFNTDGSIFAYSVCYDWSKGA  102 (136)
Q Consensus        82 ~~sp~~~~l~s~~~dd~~~~~  102 (136)
                      +|+.+...+++|+-|.-....
T Consensus       108 ~fNeesSVv~SgsfD~s~r~w  128 (307)
T KOG0316|consen  108 RFNEESSVVASGSFDSSVRLW  128 (307)
T ss_pred             EecCcceEEEeccccceeEEE
Confidence            999999999998776644333

>PTZ00420 coronin; Provisional

Probab=99.19  E-value=2.8e-10  Score=92.61  Aligned_cols=92  Identities=15%  Similarity=0.258  Sum_probs=72.8

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCC-CCEEEEEcCCCcEEEEeCCCcc--------eeeecc
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPI-HHTFATAGSDGAFNFWDKDSKQ--------RLKAMS   72 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~-~~~l~s~~~dg~v~vwd~~~~~--------~~~~~~   72 (136)
                      |+.+|.+.+  |+.........+.+|.+     +|.+++|+|+ +.+|++++.|+.|++||+.++.        .+..+.
T Consensus        50 GG~~gvI~L--~~~~r~~~v~~L~gH~~-----~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~  122 (568)
T PTZ00420         50 GGLIGAIRL--ENQMRKPPVIKLKGHTS-----SILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILK  122 (568)
T ss_pred             CCceeEEEe--eecCCCceEEEEcCCCC-----CEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEee
Confidence            456677776  55555567788899999     9999999997 6899999999999999997532        234677


Q ss_pred             cCCCceeEEEEccCCCEE-EEEEcccccc
Q 041215           73 RCGQPIPCSTFNTDGSIF-AYSVCYDWSK  100 (136)
Q Consensus        73 ~h~~~v~~v~~sp~~~~l-~s~~~dd~~~  100 (136)
                      +|...|.+++|+|++..+ ++++.|...+
T Consensus       123 gH~~~V~sVaf~P~g~~iLaSgS~DgtIr  151 (568)
T PTZ00420        123 GHKKKISIIDWNPMNYYIMCSSGFDSFVN  151 (568)
T ss_pred             cCCCcEEEEEECCCCCeEEEEEeCCCeEE
Confidence            899999999999998765 5666665443

>PTZ00421 coronin; Provisional

Probab=99.19  E-value=2.4e-10  Score=91.85  Aligned_cols=86  Identities=15%  Similarity=0.175  Sum_probs=74.7

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCc-eeE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQP-IPC   80 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~-v~~   80 (136)
                      |+.||+|.|  ||..++.....+.+|..     .|.+++|+|++.+|++++.|+.|++||+.++..+.++.+|.+. +..
T Consensus       144 gs~DgtVrI--WDl~tg~~~~~l~~h~~-----~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~  216 (493)
T PTZ00421        144 AGADMVVNV--WDVERGKAVEVIKCHSD-----QITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQR  216 (493)
T ss_pred             EeCCCEEEE--EECCCCeEEEEEcCCCC-----ceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceE
Confidence            678999988  77788888888888998     9999999999999999999999999999999888888888654 457


Q ss_pred             EEEccCCCEEEEEE
Q 041215           81 STFNTDGSIFAYSV   94 (136)
Q Consensus        81 v~~sp~~~~l~s~~   94 (136)
                      +.|.+++..+++++
T Consensus       217 ~~w~~~~~~ivt~G  230 (493)
T PTZ00421        217 CLWAKRKDLIITLG  230 (493)
T ss_pred             EEEcCCCCeEEEEe
Confidence            88999887777654

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.18  E-value=1.6e-10  Score=86.59  Aligned_cols=91  Identities=16%  Similarity=0.225  Sum_probs=82.0

Q ss_pred             CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCC--EEEEEcCCCcEEEEeCCCcceeeecccCCCce
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHH--TFATAGSDGAFNFWDKDSKQRLKAMSRCGQPI   78 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~--~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v   78 (136)
                      .||.|.+|.|  ||.+...++..+-.|.+     .|+++.|.+...  .|.+|+.||.|.+|+.....++.++.+|.+.|
T Consensus        58 SGssDetI~I--YDm~k~~qlg~ll~Hag-----sitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~V  130 (362)
T KOG0294|consen   58 SGSSDETIHI--YDMRKRKQLGILLSHAG-----SITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQV  130 (362)
T ss_pred             ccCCCCcEEE--Eeccchhhhcceecccc-----ceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeeccccccc
Confidence            4788999988  99999999999999999     999999987664  89999999999999999999999999999999


Q ss_pred             eEEEEccCCCEEEEEEcccc
Q 041215           79 PCSTFNTDGSIFAYSVCYDW   98 (136)
Q Consensus        79 ~~v~~sp~~~~l~s~~~dd~   98 (136)
                      +.++++|.+++.++-++|..
T Consensus       131 t~lsiHPS~KLALsVg~D~~  150 (362)
T KOG0294|consen  131 TDLSIHPSGKLALSVGGDQV  150 (362)
T ss_pred             ceeEecCCCceEEEEcCCce
Confidence            99999999998887666653

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.18  E-value=2.2e-10  Score=89.39  Aligned_cols=88  Identities=19%  Similarity=0.279  Sum_probs=79.1

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS   81 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v   81 (136)
                      ++.|++|++  ||+..+.++++|..|+.     +|-+++|+|+|+++++|+.||.|.+|+..+++.++.+.+. +.|..+
T Consensus       428 as~dstV~l--wdv~~gv~i~~f~kH~~-----pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~-~~Ifel  499 (524)
T KOG0273|consen  428 ASFDSTVKL--WDVESGVPIHTLMKHQE-----PVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGT-GGIFEL  499 (524)
T ss_pred             eecCCeEEE--EEccCCceeEeeccCCC-----ceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCC-CeEEEE
Confidence            467889988  89999999999999999     9999999999999999999999999999999998888554 669999


Q ss_pred             EEccCCCEEEEEEccc
Q 041215           82 TFNTDGSIFAYSVCYD   97 (136)
Q Consensus        82 ~~sp~~~~l~s~~~dd   97 (136)
                      +|+..|..+..+.+|.
T Consensus       500 ~Wn~~G~kl~~~~sd~  515 (524)
T KOG0273|consen  500 CWNAAGDKLGACASDG  515 (524)
T ss_pred             EEcCCCCEEEEEecCC
Confidence            9999999888776554

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.17  E-value=4e-10  Score=95.00  Aligned_cols=94  Identities=19%  Similarity=0.296  Sum_probs=79.2

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeC-CCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHP-IHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC   80 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p-~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~   80 (136)
                      |+.||+|.+  ||..+++....+.+|..     .|.+++|+| ++.+|++++.|+.|++||+.++..+..+..+ ..|.+
T Consensus       551 ~~~Dg~v~l--Wd~~~~~~~~~~~~H~~-----~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~  622 (793)
T PLN00181        551 SNFEGVVQV--WDVARSQLVTEMKEHEK-----RVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICC  622 (793)
T ss_pred             EeCCCeEEE--EECCCCeEEEEecCCCC-----CEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEE
Confidence            567899988  77788888888999999     999999997 6789999999999999999998888877654 68999


Q ss_pred             EEEc-cCCCEEEEEEccccccccc
Q 041215           81 STFN-TDGSIFAYSVCYDWSKGAE  103 (136)
Q Consensus        81 v~~s-p~~~~l~s~~~dd~~~~~~  103 (136)
                      +.|+ +++.++++|+.|......+
T Consensus       623 v~~~~~~g~~latgs~dg~I~iwD  646 (793)
T PLN00181        623 VQFPSESGRSLAFGSADHKVYYYD  646 (793)
T ss_pred             EEEeCCCCCEEEEEeCCCeEEEEE
Confidence            9995 5789999998877554433

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.17  E-value=1.4e-10  Score=89.70  Aligned_cols=102  Identities=22%  Similarity=0.378  Sum_probs=82.5

Q ss_pred             CceeceEEEEEeeCCC-----CcceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCC--cceeeeccc
Q 041215            2 GSIEGRVGVHHLDDSQ-----QSKNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDS--KQRLKAMSR   73 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~-----~~~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~--~~~~~~~~~   73 (136)
                      |+.|+.|++|......     -.+...+.+|..     .|..++||+.. .+|.+++.|+.+.|||+++  .+..+...+
T Consensus       196 ~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~-----~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~a  270 (422)
T KOG0264|consen  196 GSDDHTICLWDINAESKEDKVVDPKTIFSGHED-----VVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKA  270 (422)
T ss_pred             ccCCCcEEEEeccccccCCccccceEEeecCCc-----ceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccc
Confidence            6889999995554432     234577889999     99999999988 7899999999999999994  455567778


Q ss_pred             CCCceeEEEEccCC-CEEEEEEcccccccccccCCC
Q 041215           74 CGQPIPCSTFNTDG-SIFAYSVCYDWSKGAENHNPA  108 (136)
Q Consensus        74 h~~~v~~v~~sp~~-~~l~s~~~dd~~~~~~~~~~~  108 (136)
                      |.++|+|++|+|.+ .+||||+.|....+++.+...
T Consensus       271 h~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~  306 (422)
T KOG0264|consen  271 HSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLN  306 (422)
T ss_pred             cCCceeEEEeCCCCCceEEeccCCCcEEEeechhcc
Confidence            99999999999954 578888888887777776555

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.17  E-value=2.9e-10  Score=92.97  Aligned_cols=89  Identities=24%  Similarity=0.435  Sum_probs=74.1

Q ss_pred             CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCccee------------
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRL------------   68 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~------------   68 (136)
                      .|+.||.|.+  ||..++-...+|..|.+     .|+.+.|+..++.+++.+.||+|+.||+....+.            
T Consensus       367 TG~eDgKVKv--Wn~~SgfC~vTFteHts-----~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~Qfs  439 (893)
T KOG0291|consen  367 TGAEDGKVKV--WNTQSGFCFVTFTEHTS-----GVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFS  439 (893)
T ss_pred             eccCCCcEEE--EeccCceEEEEeccCCC-----ceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeee
Confidence            3788999988  88899999999999999     9999999999999999999999999976543332            


Q ss_pred             --------------------------------eecccCCCceeEEEEccCCCEEEEEEccc
Q 041215           69 --------------------------------KAMSRCGQPIPCSTFNTDGSIFAYSVCYD   97 (136)
Q Consensus        69 --------------------------------~~~~~h~~~v~~v~~sp~~~~l~s~~~dd   97 (136)
                                                      -.+.+|.+||.+++|+|++..|+++ ++|
T Consensus       440 cvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~-SWD  499 (893)
T KOG0291|consen  440 CVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASG-SWD  499 (893)
T ss_pred             EEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEec-ccc
Confidence                                            3333899999999999999999976 444

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.17  E-value=3.3e-10  Score=80.98  Aligned_cols=90  Identities=22%  Similarity=0.334  Sum_probs=78.1

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS   81 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v   81 (136)
                      ++.||.+.+  ||.+.++....+..|..     .+.++.|+|++.++++++.++.|.+|++.++..+..+..|...+.++
T Consensus       195 ~~~~~~i~i--~d~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~  267 (289)
T cd00200         195 SSSDGTIKL--WDLSTGKCLGTLRGHEN-----GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSL  267 (289)
T ss_pred             ecCCCcEEE--EECCCCceecchhhcCC-----ceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEE
Confidence            455888877  77777788888878888     99999999998899988889999999999888888888999999999


Q ss_pred             EEccCCCEEEEEEcccc
Q 041215           82 TFNTDGSIFAYSVCYDW   98 (136)
Q Consensus        82 ~~sp~~~~l~s~~~dd~   98 (136)
                      +|++++.++++++.+..
T Consensus       268 ~~~~~~~~l~~~~~d~~  284 (289)
T cd00200         268 AWSPDGKRLASGSADGT  284 (289)
T ss_pred             EECCCCCEEEEecCCCe
Confidence            99999999998876653

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.16  E-value=3.3e-10  Score=83.41  Aligned_cols=90  Identities=16%  Similarity=0.289  Sum_probs=71.6

Q ss_pred             CceeceEEEEEeeC-CCCcceeEE-EeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCc--ceeeecccCCCc
Q 041215            2 GSIEGRVGVHHLDD-SQQSKNFTF-KCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSK--QRLKAMSRCGQP   77 (136)
Q Consensus         2 gs~dG~v~i~~~d~-~~~~~~~~l-~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~--~~~~~~~~h~~~   77 (136)
                      |+.|..|+||.... .+-.....+ .+|+.     .|..++|+|.|++|++++.|.++-||.-..+  +++..+.+|...
T Consensus        33 cg~Dk~vriw~~~~~~s~~ck~vld~~hkr-----sVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnE  107 (312)
T KOG0645|consen   33 CGTDKAVRIWSTSSGDSWTCKTVLDDGHKR-----SVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENE  107 (312)
T ss_pred             ecCCceEEEEecCCCCcEEEEEeccccchh-----eeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccc
Confidence            56788888855431 222222233 24777     9999999999999999999999999986643  678899999999


Q ss_pred             eeEEEEccCCCEEEEEEcc
Q 041215           78 IPCSTFNTDGSIFAYSVCY   96 (136)
Q Consensus        78 v~~v~~sp~~~~l~s~~~d   96 (136)
                      |.|++|+++|.+||+++-|
T Consensus       108 VK~Vaws~sG~~LATCSRD  126 (312)
T KOG0645|consen  108 VKCVAWSASGNYLATCSRD  126 (312)
T ss_pred             eeEEEEcCCCCEEEEeeCC
Confidence            9999999999999999764

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.16  E-value=3.9e-10  Score=83.02  Aligned_cols=95  Identities=14%  Similarity=0.200  Sum_probs=81.7

Q ss_pred             CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCC---cceeeecccCCCc
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDS---KQRLKAMSRCGQP   77 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~---~~~~~~~~~h~~~   77 (136)
                      +||-|.++.||.=....-+...++.+|.+     .|.|++|+++|.+|+++++|..|=+|.+..   -+++..+..|...
T Consensus        78 ~aSFD~t~~Iw~k~~~efecv~~lEGHEn-----EVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqD  152 (312)
T KOG0645|consen   78 SASFDATVVIWKKEDGEFECVATLEGHEN-----EVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQD  152 (312)
T ss_pred             EeeccceEEEeecCCCceeEEeeeecccc-----ceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecccccc
Confidence            47889999885544456678899999999     999999999999999999999999999874   3567888999999


Q ss_pred             eeEEEEccCCCEEEEEEcccccc
Q 041215           78 IPCSTFNTDGSIFAYSVCYDWSK  100 (136)
Q Consensus        78 v~~v~~sp~~~~l~s~~~dd~~~  100 (136)
                      |..+.|+|...+|++++-|+..+
T Consensus       153 VK~V~WHPt~dlL~S~SYDnTIk  175 (312)
T KOG0645|consen  153 VKHVIWHPTEDLLFSCSYDNTIK  175 (312)
T ss_pred             ccEEEEcCCcceeEEeccCCeEE
Confidence            99999999999999987766443

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.16  E-value=3.1e-11  Score=92.78  Aligned_cols=91  Identities=19%  Similarity=0.179  Sum_probs=80.5

Q ss_pred             CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC   80 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~   80 (136)
                      +||.|..|.+  ||++++..+.++..|+.     .|..+.|+|++++|+++|.|..++++|+.+...++++.+|...|.+
T Consensus       239 sgskDnlVKl--WDprSg~cl~tlh~HKn-----tVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~  311 (464)
T KOG0284|consen  239 SGSKDNLVKL--WDPRSGSCLATLHGHKN-----TVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTS  311 (464)
T ss_pred             EccCCceeEe--ecCCCcchhhhhhhccc-----eEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhhee
Confidence            4778886655  99999999999999999     9999999999999999999999999999988889999999999999


Q ss_pred             EEEccCCCEEEEEEcccc
Q 041215           81 STFNTDGSIFAYSVCYDW   98 (136)
Q Consensus        81 v~~sp~~~~l~s~~~dd~   98 (136)
                      +.|+|-..-+++.++.|.
T Consensus       312 ~~WhP~~~~lftsgg~Dg  329 (464)
T KOG0284|consen  312 LTWHPLNESLFTSGGSDG  329 (464)
T ss_pred             eccccccccceeeccCCC
Confidence            999997765555555553

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.15  E-value=1.4e-10  Score=94.34  Aligned_cols=89  Identities=17%  Similarity=0.150  Sum_probs=83.0

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS   81 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v   81 (136)
                      +|.|.+|.||.  ..+...+.+|.+|+.     .|..+.|-.++..|++++.||.+++|++.+..|+.++..|.+.|..+
T Consensus       523 ~SgD~TvKIW~--is~fSClkT~eGH~~-----aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL  595 (775)
T KOG0319|consen  523 CSGDKTVKIWS--ISTFSCLKTFEGHTS-----AVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWAL  595 (775)
T ss_pred             ccCCceEEEEE--eccceeeeeecCccc-----eeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEE
Confidence            67899998854  477899999999999     99999999999999999999999999999999999999999999999


Q ss_pred             EEccCCCEEEEEEccc
Q 041215           82 TFNTDGSIFAYSVCYD   97 (136)
Q Consensus        82 ~~sp~~~~l~s~~~dd   97 (136)
                      +-++...+++||++|.
T Consensus       596 ~~~~~~~~~~tgg~Dg  611 (775)
T KOG0319|consen  596 SVSPLLDMFVTGGGDG  611 (775)
T ss_pred             eecCccceeEecCCCe
Confidence            9999999999988876

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.15  E-value=1.4e-10  Score=87.10  Aligned_cols=87  Identities=18%  Similarity=0.251  Sum_probs=73.6

Q ss_pred             CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC   80 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~   80 (136)
                      ||..||.+.||.|  .+..+..+|.+|-.     +|.+++|+++|++|++++.|..|.+||+..|.+++++ ...++|..
T Consensus        40 vGc~nG~vvI~D~--~T~~iar~lsaH~~-----pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri-rf~spv~~  111 (405)
T KOG1273|consen   40 VGCANGRVVIYDF--DTFRIARMLSAHVR-----PITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI-RFDSPVWG  111 (405)
T ss_pred             eeccCCcEEEEEc--cccchhhhhhcccc-----ceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE-EccCccce
Confidence            5788999999555  55568888999999     9999999999999999999999999999999988887 45589999


Q ss_pred             EEEccCCCEEEEEEc
Q 041215           81 STFNTDGSIFAYSVC   95 (136)
Q Consensus        81 v~~sp~~~~l~s~~~   95 (136)
                      +.|+|..+..+.++-
T Consensus       112 ~q~hp~k~n~~va~~  126 (405)
T KOG1273|consen  112 AQWHPRKRNKCVATI  126 (405)
T ss_pred             eeeccccCCeEEEEE
Confidence            999997665444443

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.15  E-value=2.6e-10  Score=83.44  Aligned_cols=97  Identities=21%  Similarity=0.405  Sum_probs=82.8

Q ss_pred             CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCC-cceeeecccCCCce
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDS-KQRLKAMSRCGQPI   78 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~-~~~~~~~~~h~~~v   78 (136)
                      ++|+||+|.+  |+...+..+.+|.+|..     -|-...|+|.. +++++++.|+.+++||++. |..+. +..|...+
T Consensus       122 tsSWD~TiKL--W~~~r~~Sv~Tf~gh~~-----~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Ei  193 (311)
T KOG0277|consen  122 TSSWDGTIKL--WDPNRPNSVQTFNGHNS-----CIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEI  193 (311)
T ss_pred             eeccCCceEe--ecCCCCcceEeecCCcc-----EEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEecccee
Confidence            3689999988  88888899999999999     99999999988 7999999999999999875 44444 88999999


Q ss_pred             eEEEEcc-CCCEEEEEEccccccccccc
Q 041215           79 PCSTFNT-DGSIFAYSVCYDWSKGAENH  105 (136)
Q Consensus        79 ~~v~~sp-~~~~l~s~~~dd~~~~~~~~  105 (136)
                      .|+.|+. +..+++||+.|...++.+.+
T Consensus       194 l~cdw~ky~~~vl~Tg~vd~~vr~wDir  221 (311)
T KOG0277|consen  194 LCCDWSKYNHNVLATGGVDNLVRGWDIR  221 (311)
T ss_pred             EeecccccCCcEEEecCCCceEEEEehh
Confidence            9999997 56689998888877665554

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.15  E-value=6.1e-11  Score=98.37  Aligned_cols=88  Identities=16%  Similarity=0.223  Sum_probs=80.5

Q ss_pred             eceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEc
Q 041215            5 EGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFN   84 (136)
Q Consensus         5 dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~s   84 (136)
                      .|.|.+  ||-+.+..+..|..|++     +|..++|||.+.++++|++|-.|++|++.+..++.++.+|.+-|+.+.|+
T Consensus        30 sG~IQl--WDYRM~tli~rFdeHdG-----pVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FH  102 (1202)
T KOG0292|consen   30 SGVIQL--WDYRMGTLIDRFDEHDG-----PVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFH  102 (1202)
T ss_pred             Cceeee--ehhhhhhHHhhhhccCC-----ccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeecc
Confidence            466666  67788999999999999     99999999999999999999999999999999999999999999999999


Q ss_pred             cCCCEEEEEEccccc
Q 041215           85 TDGSIFAYSVCYDWS   99 (136)
Q Consensus        85 p~~~~l~s~~~dd~~   99 (136)
                      +.-.++++|++|-..
T Consensus       103 heyPWIlSASDDQTI  117 (1202)
T KOG0292|consen  103 HEYPWILSASDDQTI  117 (1202)
T ss_pred             CCCceEEEccCCCeE
Confidence            999999988776533

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.15  E-value=2.7e-10  Score=82.93  Aligned_cols=92  Identities=13%  Similarity=0.232  Sum_probs=76.0

Q ss_pred             CceeceEEEEEeeCCCC---cceeEEEeeeCCCCccceeEEEE-eCC-CCEEEEEcCCCcEEEEeCCCcc--eeeecccC
Q 041215            2 GSIEGRVGVHHLDDSQQ---SKNFTFKCHRDGSEIYSVNSLNF-HPI-HHTFATAGSDGAFNFWDKDSKQ--RLKAMSRC   74 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~---~~~~~l~~h~~~~~~~~v~~l~~-~p~-~~~l~s~~~dg~v~vwd~~~~~--~~~~~~~h   74 (136)
                      +|.|++|+|  |+.+++   ..+.+|.+|.+     ||..++| ||. |.+|++++.||.|.||..+++.  ..+++..|
T Consensus        29 csSD~tVkI--f~v~~n~~s~ll~~L~Gh~G-----PVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h  101 (299)
T KOG1332|consen   29 CSSDGTVKI--FEVRNNGQSKLLAELTGHSG-----PVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAH  101 (299)
T ss_pred             ecCCccEEE--EEEcCCCCceeeeEecCCCC-----CeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhh
Confidence            688999999  776543   56788999999     9999999 564 5899999999999999998873  34667789


Q ss_pred             CCceeEEEEccCC--CEEEEEEcccccc
Q 041215           75 GQPIPCSTFNTDG--SIFAYSVCYDWSK  100 (136)
Q Consensus        75 ~~~v~~v~~sp~~--~~l~s~~~dd~~~  100 (136)
                      .+.|++|+|.|++  -+|++|++|+-..
T Consensus       102 ~~SVNsV~wapheygl~LacasSDG~vs  129 (299)
T KOG1332|consen  102 SASVNSVAWAPHEYGLLLACASSDGKVS  129 (299)
T ss_pred             cccceeecccccccceEEEEeeCCCcEE
Confidence            9999999999975  5788888877443

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.14  E-value=1.2e-09  Score=81.82  Aligned_cols=86  Identities=20%  Similarity=0.312  Sum_probs=70.2

Q ss_pred             eceEEEEEeeCCCCc--ceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCc-EEEEeCCCcceeeecccC--CCcee
Q 041215            5 EGRVGVHHLDDSQQS--KNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGA-FNFWDKDSKQRLKAMSRC--GQPIP   79 (136)
Q Consensus         5 dG~v~i~~~d~~~~~--~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~-v~vwd~~~~~~~~~~~~h--~~~v~   79 (136)
                      -|.|.|  .|....+  ....+..|++     .|.|++++.+|.+++++|..|+ |+|||..+|..+++++..  ...|.
T Consensus       158 ~GqvQi--~dL~~~~~~~p~~I~AH~s-----~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy  230 (346)
T KOG2111|consen  158 TGQVQI--VDLASTKPNAPSIINAHDS-----DIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIY  230 (346)
T ss_pred             cceEEE--EEhhhcCcCCceEEEcccC-----ceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEE
Confidence            366666  4433222  3467789999     9999999999999999999997 899999999999999764  47899


Q ss_pred             EEEEccCCCEEEEEEccc
Q 041215           80 CSTFNTDGSIFAYSVCYD   97 (136)
Q Consensus        80 ~v~~sp~~~~l~s~~~dd   97 (136)
                      ||+|||+..+||.++.-+
T Consensus       231 ~iaFSp~~s~LavsSdKg  248 (346)
T KOG2111|consen  231 CIAFSPNSSWLAVSSDKG  248 (346)
T ss_pred             EEEeCCCccEEEEEcCCC
Confidence            999999999999765433

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.13  E-value=1.5e-09  Score=77.50  Aligned_cols=91  Identities=20%  Similarity=0.273  Sum_probs=77.7

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS   81 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v   81 (136)
                      ++.||.+.+  ||...++....+..|..     .+.++.|+|++.++++++.++.|.+||+.++.....+..|...+.++
T Consensus        69 ~~~~~~i~i--~~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~  141 (289)
T cd00200          69 GSSDKTIRL--WDLETGECVRTLTGHTS-----YVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSV  141 (289)
T ss_pred             EcCCCeEEE--EEcCcccceEEEeccCC-----cEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEE
Confidence            566888877  66677677888888888     99999999998899999889999999999888888888899999999


Q ss_pred             EEccCCCEEEEEEccccc
Q 041215           82 TFNTDGSIFAYSVCYDWS   99 (136)
Q Consensus        82 ~~sp~~~~l~s~~~dd~~   99 (136)
                      +|+|++.++++++.+...
T Consensus       142 ~~~~~~~~l~~~~~~~~i  159 (289)
T cd00200         142 AFSPDGTFVASSSQDGTI  159 (289)
T ss_pred             EEcCcCCEEEEEcCCCcE
Confidence            999998888877645543

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.12  E-value=6.7e-10  Score=89.45  Aligned_cols=92  Identities=21%  Similarity=0.277  Sum_probs=82.5

Q ss_pred             CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCc-ceeeecccCCCcee
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSK-QRLKAMSRCGQPIP   79 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~-~~~~~~~~h~~~v~   79 (136)
                      +||.|..|++  |+-.+.....+|..|..     =|.+++.||...++.++++|-.|++||.+.. .+.++|.+|..-|.
T Consensus        72 ~GsDD~~IrV--fnynt~ekV~~FeAH~D-----yIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVM  144 (794)
T KOG0276|consen   72 TGSDDMQIRV--FNYNTGEKVKTFEAHSD-----YIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVM  144 (794)
T ss_pred             EecCCceEEE--EecccceeeEEeecccc-----ceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEE
Confidence            5899999999  55588899999999999     9999999999999999999999999999875 66789999999999


Q ss_pred             EEEEccC-CCEEEEEEccccc
Q 041215           80 CSTFNTD-GSIFAYSVCYDWS   99 (136)
Q Consensus        80 ~v~~sp~-~~~l~s~~~dd~~   99 (136)
                      +|+|+|. ...+|+|+-|...
T Consensus       145 qv~fnPkD~ntFaS~sLDrTV  165 (794)
T KOG0276|consen  145 QVAFNPKDPNTFASASLDRTV  165 (794)
T ss_pred             EEEecCCCccceeeeeccccE
Confidence            9999995 5689999888743

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.12  E-value=1.2e-10  Score=90.95  Aligned_cols=91  Identities=24%  Similarity=0.371  Sum_probs=77.7

Q ss_pred             CCceeceEEEEEeeCC-CCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCcee
Q 041215            1 VGSIEGRVGVHHLDDS-QQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIP   79 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~-~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~   79 (136)
                      .|++|+.|.||.  .. .+..+.+|.+|..     +|..++|+++|..+.+++.|+.|++||+++|.++..+. ....+.
T Consensus       232 S~gmD~~vklW~--vy~~~~~lrtf~gH~k-----~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~  303 (503)
T KOG0282|consen  232 SGGMDGLVKLWN--VYDDRRCLRTFKGHRK-----PVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPT  303 (503)
T ss_pred             ecCCCceEEEEE--EecCcceehhhhcchh-----hhhhhhccccCCeeeeeecceeeeeeccccceEEEEEe-cCCCce
Confidence            478999998855  33 4789999999999     99999999999999999999999999999999988884 346889


Q ss_pred             EEEEccCC-CEEEEEEccccc
Q 041215           80 CSTFNTDG-SIFAYSVCYDWS   99 (136)
Q Consensus        80 ~v~~sp~~-~~l~s~~~dd~~   99 (136)
                      |+.|+|++ ..+++|..|.=.
T Consensus       304 cvkf~pd~~n~fl~G~sd~ki  324 (503)
T KOG0282|consen  304 CVKFHPDNQNIFLVGGSDKKI  324 (503)
T ss_pred             eeecCCCCCcEEEEecCCCcE
Confidence            99999998 677777666533

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.10  E-value=1.4e-09  Score=82.87  Aligned_cols=86  Identities=23%  Similarity=0.314  Sum_probs=75.5

Q ss_pred             eceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCc-EEEEeCCCcceeeecccCC--CceeEE
Q 041215            5 EGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGA-FNFWDKDSKQRLKAMSRCG--QPIPCS   81 (136)
Q Consensus         5 dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~-v~vwd~~~~~~~~~~~~h~--~~v~~v   81 (136)
                      .|.|.+  ||..+-++...+.+|++     ++-+++|+++|.+|++++.-|+ |++|.+.+|+.+.+|+...  ..|.++
T Consensus       152 ~GdV~l--~d~~nl~~v~~I~aH~~-----~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL  224 (391)
T KOG2110|consen  152 SGDVVL--FDTINLQPVNTINAHKG-----PLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSL  224 (391)
T ss_pred             CceEEE--EEcccceeeeEEEecCC-----ceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEE
Confidence            466655  99888899999999999     9999999999999999999996 8999999999999997653  567899


Q ss_pred             EEccCCCEEEEEEccc
Q 041215           82 TFNTDGSIFAYSVCYD   97 (136)
Q Consensus        82 ~~sp~~~~l~s~~~dd   97 (136)
                      +|+|++++|++.+..+
T Consensus       225 ~Fs~ds~~L~~sS~Te  240 (391)
T KOG2110|consen  225 SFSPDSQFLAASSNTE  240 (391)
T ss_pred             EECCCCCeEEEecCCC
Confidence            9999999988766544

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.10  E-value=4.8e-11  Score=90.05  Aligned_cols=95  Identities=19%  Similarity=0.312  Sum_probs=78.6

Q ss_pred             CCceeceEEEEEeeCCCCcce--------eEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecc
Q 041215            1 VGSIEGRVGVHHLDDSQQSKN--------FTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMS   72 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~--------~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~   72 (136)
                      .||.||.|-+|.|  .+++..        ..|--++.     +|.|++|+.|...|++|+.||.|++|.+.+|.|+..|.
T Consensus       230 sgSvDGFiEVWny--~~GKlrKDLkYQAqd~fMMmd~-----aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFd  302 (508)
T KOG0275|consen  230 SGSVDGFIEVWNY--TTGKLRKDLKYQAQDNFMMMDD-----AVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFD  302 (508)
T ss_pred             eccccceeeeehh--ccchhhhhhhhhhhcceeeccc-----ceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhh
Confidence            4899999999766  444432        23334667     99999999999999999999999999999999999886


Q ss_pred             -cCCCceeEEEEccCCCEEEEEEcccccccc
Q 041215           73 -RCGQPIPCSTFNTDGSIFAYSVCYDWSKGA  102 (136)
Q Consensus        73 -~h~~~v~~v~~sp~~~~l~s~~~dd~~~~~  102 (136)
                       .|...|+|+.|+.|+..+++++-|-....+
T Consensus       303 rAHtkGvt~l~FSrD~SqiLS~sfD~tvRiH  333 (508)
T KOG0275|consen  303 RAHTKGVTCLSFSRDNSQILSASFDQTVRIH  333 (508)
T ss_pred             hhhccCeeEEEEccCcchhhcccccceEEEe
Confidence             799999999999999999987666544433

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.09  E-value=8.5e-11  Score=88.75  Aligned_cols=93  Identities=20%  Similarity=0.210  Sum_probs=85.3

Q ss_pred             CCceeceEEEEEeeCCCCcceeEEE-eeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCcee
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTFK-CHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIP   79 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l~-~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~   79 (136)
                      .||.||.|.+  |.+.++..+..|. .|..     .|+|++|+.|+..+.+++.|-++++.-+.+|+++.++.+|.+-|+
T Consensus       280 sGsqDGkIKv--Wri~tG~ClRrFdrAHtk-----Gvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn  352 (508)
T KOG0275|consen  280 SGSQDGKIKV--WRIETGQCLRRFDRAHTK-----GVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVN  352 (508)
T ss_pred             ccCcCCcEEE--EEEecchHHHHhhhhhcc-----CeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCcccccc
Confidence            4899999999  5568889888886 7888     999999999999999999999999999999999999999999999


Q ss_pred             EEEEccCCCEEEEEEcccccc
Q 041215           80 CSTFNTDGSIFAYSVCYDWSK  100 (136)
Q Consensus        80 ~v~~sp~~~~l~s~~~dd~~~  100 (136)
                      .+.|+++|..++++++|...+
T Consensus       353 ~a~ft~dG~~iisaSsDgtvk  373 (508)
T KOG0275|consen  353 EATFTDDGHHIISASSDGTVK  373 (508)
T ss_pred             ceEEcCCCCeEEEecCCccEE
Confidence            999999999999999988543

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.08  E-value=1.3e-09  Score=79.68  Aligned_cols=80  Identities=15%  Similarity=0.170  Sum_probs=70.9

Q ss_pred             CcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCc-ceeeecccCCCceeEEEEccCCCEEEEEEcc
Q 041215           18 QSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSK-QRLKAMSRCGQPIPCSTFNTDGSIFAYSVCY   96 (136)
Q Consensus        18 ~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~-~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d   96 (136)
                      -.++..|+.|.+     -+..+.|+|++.+|++++.|.+++||+.++. +...++.+|..++..++||-++++|+||++|
T Consensus       205 l~P~~k~~ah~~-----~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd  279 (311)
T KOG0315|consen  205 LEPVHKFQAHNG-----HILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSD  279 (311)
T ss_pred             ceEhhheecccc-----eEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCC
Confidence            456778899999     9999999999999999999999999999987 5556788999999999999999999999999


Q ss_pred             cccccc
Q 041215           97 DWSKGA  102 (136)
Q Consensus        97 d~~~~~  102 (136)
                      ...+.-
T Consensus       280 ~~~rlW  285 (311)
T KOG0315|consen  280 HTARLW  285 (311)
T ss_pred             Cceeec
Confidence            766443

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.08  E-value=4.6e-10  Score=84.56  Aligned_cols=89  Identities=19%  Similarity=0.331  Sum_probs=76.9

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCcceeeec---ccCCCc
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQRLKAM---SRCGQP   77 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~~~~~~---~~h~~~   77 (136)
                      |..=|.|+|  +|..+++....+.+|..     .|+.+.++|.. +++++++.|-.|++||+++..++..+   .+|.+.
T Consensus       111 ~G~~GvIrV--id~~~~~~~~~~~ghG~-----sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrde  183 (385)
T KOG1034|consen  111 GGYLGVIRV--IDVVSGQCSKNYRGHGG-----SINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDE  183 (385)
T ss_pred             ecceeEEEE--EecchhhhccceeccCc-----cchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCc
Confidence            334566766  88888888899999999     99999999998 79999999999999999999887665   569999


Q ss_pred             eeEEEEccCCCEEEEEEccc
Q 041215           78 IPCSTFNTDGSIFAYSVCYD   97 (136)
Q Consensus        78 v~~v~~sp~~~~l~s~~~dd   97 (136)
                      |.+|.|++++..+++++-|-
T Consensus       184 VLSvD~~~~gd~i~ScGmDh  203 (385)
T KOG1034|consen  184 VLSVDFSLDGDRIASCGMDH  203 (385)
T ss_pred             EEEEEEcCCCCeeeccCCcc
Confidence            99999999999999765543

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.07  E-value=3.7e-10  Score=88.26  Aligned_cols=89  Identities=22%  Similarity=0.259  Sum_probs=79.8

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC   80 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~   80 (136)
                      +|-|+.+.+  ||.++|+.+..|. ...     .+.|+.|+|++ +.+++|+.|+.|+.||+++++.++++..|.+.|+.
T Consensus       276 ~sfD~~lKl--wDtETG~~~~~f~-~~~-----~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~  347 (503)
T KOG0282|consen  276 ASFDRFLKL--WDTETGQVLSRFH-LDK-----VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILD  347 (503)
T ss_pred             eecceeeee--eccccceEEEEEe-cCC-----CceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheee
Confidence            577888877  9999999998886 344     78999999999 89999999999999999999999999999999999


Q ss_pred             EEEccCCCEEEEEEcccc
Q 041215           81 STFNTDGSIFAYSVCYDW   98 (136)
Q Consensus        81 v~~sp~~~~l~s~~~dd~   98 (136)
                      |.|-++++.+++++.|.-
T Consensus       348 i~F~~~g~rFissSDdks  365 (503)
T KOG0282|consen  348 ITFVDEGRRFISSSDDKS  365 (503)
T ss_pred             eEEccCCceEeeeccCcc
Confidence            999999999998777653

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.07  E-value=5.6e-10  Score=91.95  Aligned_cols=83  Identities=16%  Similarity=0.284  Sum_probs=73.1

Q ss_pred             EEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCC
Q 041215            8 VGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDG   87 (136)
Q Consensus         8 v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~   87 (136)
                      ..|..+|..+.+....|.+|.+     .|++++|+|+|++|++++.|++|++||+.++.++-.+ .-..++.++.|+|.|
T Consensus       556 f~I~vvD~~t~kvvR~f~gh~n-----ritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~-~vd~~~~sls~SPng  629 (910)
T KOG1539|consen  556 FSIRVVDVVTRKVVREFWGHGN-----RITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGL-LVDSPCTSLSFSPNG  629 (910)
T ss_pred             eeEEEEEchhhhhhHHhhcccc-----ceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeE-ecCCcceeeEECCCC
Confidence            3444588888888899999999     9999999999999999999999999999999887665 445889999999999


Q ss_pred             CEEEEEEcc
Q 041215           88 SIFAYSVCY   96 (136)
Q Consensus        88 ~~l~s~~~d   96 (136)
                      .+|||+..|
T Consensus       630 D~LAT~Hvd  638 (910)
T KOG1539|consen  630 DFLATVHVD  638 (910)
T ss_pred             CEEEEEEec
Confidence            999998665

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.06  E-value=7.1e-10  Score=86.01  Aligned_cols=90  Identities=21%  Similarity=0.341  Sum_probs=77.9

Q ss_pred             CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccC-CCcee
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRC-GQPIP   79 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h-~~~v~   79 (136)
                      .|+.||.+.|  ||.+++.....|.+|.+     +|..++|+.+|.+|+++.+|+.|++||++......++... ...+.
T Consensus       364 tgt~d~~vki--wdlks~~~~a~Fpght~-----~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~  436 (506)
T KOG0289|consen  364 TGTPDGVVKI--WDLKSQTNVAKFPGHTG-----PVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVN  436 (506)
T ss_pred             ccCCCceEEE--EEcCCccccccCCCCCC-----ceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccce
Confidence            3788999998  77788888889999999     9999999999999999999999999999887766666433 35799


Q ss_pred             EEEEccCCCEEEEEEccc
Q 041215           80 CSTFNTDGSIFAYSVCYD   97 (136)
Q Consensus        80 ~v~~sp~~~~l~s~~~dd   97 (136)
                      +++|.+.|.+++.++.+.
T Consensus       437 s~~fD~SGt~L~~~g~~l  454 (506)
T KOG0289|consen  437 SLSFDQSGTYLGIAGSDL  454 (506)
T ss_pred             eEEEcCCCCeEEeeccee
Confidence            999999999999886654

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.06  E-value=5.3e-10  Score=88.65  Aligned_cols=65  Identities=25%  Similarity=0.356  Sum_probs=59.1

Q ss_pred             ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEccccc
Q 041215           35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWS   99 (136)
Q Consensus        35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd~~   99 (136)
                      .|+..+|+|||.+|++.+.||.++|||+.+.+.+..+..--+.+.||+|||||+++++|+.||..
T Consensus       292 ~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLV  356 (636)
T KOG2394|consen  292 SINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLV  356 (636)
T ss_pred             cccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceE
Confidence            78899999999999999999999999999887777666666889999999999999999999954

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.06  E-value=5.1e-10  Score=88.44  Aligned_cols=103  Identities=20%  Similarity=0.247  Sum_probs=74.5

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCc---ceeeecccCCC--
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSK---QRLKAMSRCGQ--   76 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~---~~~~~~~~h~~--   76 (136)
                      +|.||+++||..+- ..+++..++.......+-++..|+|++++.++++|..||.|.+|+....   ...+.-.+|..  
T Consensus       287 ~s~DgtlRiWdv~~-~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~  365 (641)
T KOG0772|consen  287 CSYDGTLRIWDVNN-TKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQ  365 (641)
T ss_pred             ecCCCcEEEEecCC-chhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCC
Confidence            68899999944432 3355555553322233447899999999999999999999999997432   12233345754  


Q ss_pred             ceeEEEEccCCCEEEEEEccccccccccc
Q 041215           77 PIPCSTFNTDGSIFAYSVCYDWSKGAENH  105 (136)
Q Consensus        77 ~v~~v~~sp~~~~l~s~~~dd~~~~~~~~  105 (136)
                      .|+||.||++|++|++-+.|+..+.-+..
T Consensus       366 ~Itsi~FS~dg~~LlSRg~D~tLKvWDLr  394 (641)
T KOG0772|consen  366 DITSISFSYDGNYLLSRGFDDTLKVWDLR  394 (641)
T ss_pred             ceeEEEeccccchhhhccCCCceeeeecc
Confidence            99999999999999999999966544333

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.05  E-value=7.4e-10  Score=92.11  Aligned_cols=90  Identities=17%  Similarity=0.279  Sum_probs=83.0

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS   81 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v   81 (136)
                      |..|=.|.+|.|  +....++++.+|..     =|..+.||+...++.++|+|.+|+||+.+++.++..+.+|..-|.|.
T Consensus        69 GGDDykIkVWnY--k~rrclftL~GHlD-----YVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcA  141 (1202)
T KOG0292|consen   69 GGDDYKIKVWNY--KTRRCLFTLLGHLD-----YVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCA  141 (1202)
T ss_pred             cCCccEEEEEec--ccceehhhhccccc-----eeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEee
Confidence            677888999777  56689999999999     99999999999999999999999999999999999999999999999


Q ss_pred             EEccCCCEEEEEEcccc
Q 041215           82 TFNTDGSIFAYSVCYDW   98 (136)
Q Consensus        82 ~~sp~~~~l~s~~~dd~   98 (136)
                      +|+|...++++|+-|-.
T Consensus       142 qFhptEDlIVSaSLDQT  158 (1202)
T KOG0292|consen  142 QFHPTEDLIVSASLDQT  158 (1202)
T ss_pred             ccCCccceEEEecccce
Confidence            99999999999877653

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.04  E-value=2.3e-09  Score=90.40  Aligned_cols=95  Identities=15%  Similarity=0.136  Sum_probs=78.2

Q ss_pred             CCceeceEEEEEeeCCCCc-ceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCc------ceeeeccc
Q 041215            1 VGSIEGRVGVHHLDDSQQS-KNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSK------QRLKAMSR   73 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~-~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~------~~~~~~~~   73 (136)
                      +|+.||.|.+  ||.+... ....+.+|..     .|.++.|. ++..|++++.|+.|++||+...      ..+.++.+
T Consensus       635 tgs~dg~I~i--wD~~~~~~~~~~~~~h~~-----~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~g  706 (793)
T PLN00181        635 FGSADHKVYY--YDLRNPKLPLCTMIGHSK-----TVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMG  706 (793)
T ss_pred             EEeCCCeEEE--EECCCCCccceEecCCCC-----CEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcC
Confidence            3678898887  7776554 5677788998     99999997 6789999999999999998742      45778889


Q ss_pred             CCCceeEEEEccCCCEEEEEEccccccccc
Q 041215           74 CGQPIPCSTFNTDGSIFAYSVCYDWSKGAE  103 (136)
Q Consensus        74 h~~~v~~v~~sp~~~~l~s~~~dd~~~~~~  103 (136)
                      |...+.+++|+|++.++++|+.|.......
T Consensus       707 h~~~i~~v~~s~~~~~lasgs~D~~v~iw~  736 (793)
T PLN00181        707 HTNVKNFVGLSVSDGYIATGSETNEVFVYH  736 (793)
T ss_pred             CCCCeeEEEEcCCCCEEEEEeCCCEEEEEE
Confidence            999999999999999999998877554443

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.04  E-value=1.8e-10  Score=93.67  Aligned_cols=90  Identities=22%  Similarity=0.312  Sum_probs=82.7

Q ss_pred             CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC   80 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~   80 (136)
                      .|+.+|+|.+  ||....+..++|.||..     .+..+.|||.+.+.+.++.|.-+.+||.....+.+.+.+|...|.+
T Consensus        87 agsasgtiK~--wDleeAk~vrtLtgh~~-----~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~  159 (825)
T KOG0267|consen   87 AGSASGTIKV--WDLEEAKIVRTLTGHLL-----NITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDV  159 (825)
T ss_pred             ccccCCceee--eehhhhhhhhhhhcccc-----CcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEE
Confidence            3788999988  77788899999999999     9999999999999999999999999999977789999999999999


Q ss_pred             EEEccCCCEEEEEEccc
Q 041215           81 STFNTDGSIFAYSVCYD   97 (136)
Q Consensus        81 v~~sp~~~~l~s~~~dd   97 (136)
                      ++|+|+|++++.++.|.
T Consensus       160 l~lsP~Gr~v~~g~ed~  176 (825)
T KOG0267|consen  160 LRLSPDGRWVASGGEDN  176 (825)
T ss_pred             EeecCCCceeeccCCcc
Confidence            99999999999887754

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.03  E-value=1.1e-09  Score=84.70  Aligned_cols=92  Identities=15%  Similarity=0.192  Sum_probs=77.8

Q ss_pred             CCceeceEEEEEeeCC-CCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeeccc-CCCce
Q 041215            1 VGSIEGRVGVHHLDDS-QQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSR-CGQPI   78 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~-~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~-h~~~v   78 (136)
                      .||.|.+..||..... .-+..+++.+|..     +|..+.|+||.++|++|+.+..+.+||+.+|.....+.. +...+
T Consensus       241 saSkD~Taiiw~v~~d~~~kl~~tlvgh~~-----~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~  315 (519)
T KOG0293|consen  241 SASKDSTAIIWIVVYDVHFKLKKTLVGHSQ-----PVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSV  315 (519)
T ss_pred             eccCCceEEEEEEecCcceeeeeeeecccC-----ceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCc
Confidence            3788889888765543 2466788889998     999999999999999999999999999999988776643 46889


Q ss_pred             eEEEEccCCCEEEEEEccc
Q 041215           79 PCSTFNTDGSIFAYSVCYD   97 (136)
Q Consensus        79 ~~v~~sp~~~~l~s~~~dd   97 (136)
                      .+++|.|||..+++|+.|.
T Consensus       316 ~sc~W~pDg~~~V~Gs~dr  334 (519)
T KOG0293|consen  316 SSCAWCPDGFRFVTGSPDR  334 (519)
T ss_pred             ceeEEccCCceeEecCCCC
Confidence            9999999999999987764

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.01  E-value=4.7e-10  Score=88.55  Aligned_cols=98  Identities=17%  Similarity=0.220  Sum_probs=80.8

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeee-----------
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKA-----------   70 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~-----------   70 (136)
                      +..||+|.|  ||..+......|++|..     .+.||.++++|..|-+|+.|.+|+.||+..++.+.+           
T Consensus       527 ccsdGnI~v--wDLhnq~~VrqfqGhtD-----GascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg  599 (705)
T KOG0639|consen  527 CCSDGNIAV--WDLHNQTLVRQFQGHTD-----GASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLG  599 (705)
T ss_pred             eccCCcEEE--EEcccceeeecccCCCC-----CceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecc
Confidence            346999999  88898999999999999     999999999999999999999999999876543322           


Q ss_pred             -----------------------------cccCCCceeEEEEccCCCEEEEEEcccccccccccCCC
Q 041215           71 -----------------------------MSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAENHNPA  108 (136)
Q Consensus        71 -----------------------------~~~h~~~v~~v~~sp~~~~l~s~~~dd~~~~~~~~~~~  108 (136)
                                                   +..|.+.|.++.|++.|+++++.+.|++.  ..|.+|-
T Consensus       600 ~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlL--nawrtPy  664 (705)
T KOG0639|consen  600 YCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLL--NAWRTPY  664 (705)
T ss_pred             cCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhh--hhccCcc
Confidence                                         11466788899999999999988888876  5565554

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.01  E-value=3.2e-09  Score=85.76  Aligned_cols=90  Identities=17%  Similarity=0.147  Sum_probs=83.4

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS   81 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v   81 (136)
                      |+.++.+++  ||+++.+.+..+.+|..     .|.++..+.+|..++++++||+|++||+....++.++..|...|.++
T Consensus       189 Ggtek~lr~--wDprt~~kimkLrGHTd-----NVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL  261 (735)
T KOG0308|consen  189 GGTEKDLRL--WDPRTCKKIMKLRGHTD-----NVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWAL  261 (735)
T ss_pred             cCcccceEE--eccccccceeeeecccc-----ceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEE
Confidence            677888887  99999999999999999     99999999999999999999999999999999999999999889999


Q ss_pred             EEccCCCEEEEEEcccc
Q 041215           82 TFNTDGSIFAYSVCYDW   98 (136)
Q Consensus        82 ~~sp~~~~l~s~~~dd~   98 (136)
                      ..+|+-..+.+|+.|.-
T Consensus       262 ~~~~sf~~vYsG~rd~~  278 (735)
T KOG0308|consen  262 QSSPSFTHVYSGGRDGN  278 (735)
T ss_pred             eeCCCcceEEecCCCCc
Confidence            99999888888877664

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.99  E-value=3.1e-09  Score=83.17  Aligned_cols=88  Identities=25%  Similarity=0.316  Sum_probs=75.7

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCc-ceeeecccCCCcee
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDSK-QRLKAMSRCGQPIP   79 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~-~~~~~~~~h~~~v~   79 (136)
                      ||.|+.+.+  ||..+......+.+|..     -|.|.+|+|.. +.+++|+.||.|++||+... ..+.++ .|..+|-
T Consensus       129 ~sDd~v~k~--~d~s~a~v~~~l~~htD-----YVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe  200 (487)
T KOG0310|consen  129 GSDDKVVKY--WDLSTAYVQAELSGHTD-----YVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVE  200 (487)
T ss_pred             cCCCceEEE--EEcCCcEEEEEecCCcc-----eeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe-cCCCcee
Confidence            677777766  77777666778889999     99999999876 69999999999999999875 566666 7899999


Q ss_pred             EEEEccCCCEEEEEEccc
Q 041215           80 CSTFNTDGSIFAYSVCYD   97 (136)
Q Consensus        80 ~v~~sp~~~~l~s~~~dd   97 (136)
                      .|.+-|.|.++++|++..
T Consensus       201 ~vl~lpsgs~iasAgGn~  218 (487)
T KOG0310|consen  201 SVLALPSGSLIASAGGNS  218 (487)
T ss_pred             eEEEcCCCCEEEEcCCCe
Confidence            999999999999998855

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.98  E-value=7.5e-10  Score=88.05  Aligned_cols=88  Identities=18%  Similarity=0.255  Sum_probs=75.6

Q ss_pred             CCceeceEEEEEeeCCCCcceeE-EEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCcee
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFT-FKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIP   79 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~-l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~   79 (136)
                      +|+.||.|..  +|.+..+.... +.+|..     .|..+.|++++.+|++|+.|+.+.|||......+..+..|.+.|.
T Consensus       275 sGsr~~~I~~--~dvR~~~~~~~~~~~H~q-----eVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVK  347 (484)
T KOG0305|consen  275 SGSRDGKILN--HDVRISQHVVSTLQGHRQ-----EVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVK  347 (484)
T ss_pred             EecCCCcEEE--EEEecchhhhhhhhcccc-----eeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeee
Confidence            4778888877  77776555444 888999     999999999999999999999999999988888899999999999


Q ss_pred             EEEEccCC-CEEEEEEc
Q 041215           80 CSTFNTDG-SIFAYSVC   95 (136)
Q Consensus        80 ~v~~sp~~-~~l~s~~~   95 (136)
                      .++|+|-. .+||+|++
T Consensus       348 A~awcP~q~~lLAsGGG  364 (484)
T KOG0305|consen  348 ALAWCPWQSGLLATGGG  364 (484)
T ss_pred             EeeeCCCccCceEEcCC
Confidence            99999965 57888755

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=98.97  E-value=2.4e-09  Score=81.52  Aligned_cols=75  Identities=25%  Similarity=0.435  Sum_probs=69.2

Q ss_pred             cceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEcccc
Q 041215           19 SKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDW   98 (136)
Q Consensus        19 ~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd~   98 (136)
                      ....+|..|..     .|.+++++|+.+++++|+.|..-++|+..++....++.+|.+.|.|+.|+.+|.+||||.-++-
T Consensus        55 dS~~tF~~H~~-----svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~  129 (399)
T KOG0296|consen   55 DSLVTFDKHTD-----SVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGK  129 (399)
T ss_pred             cceeehhhcCC-----ceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCcc
Confidence            45678889999     9999999998899999999999999999999999999999999999999999999999865553

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=98.97  E-value=8.8e-09  Score=73.49  Aligned_cols=80  Identities=21%  Similarity=0.425  Sum_probs=59.9

Q ss_pred             eeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCC---CcEEEEeCCCcceeeecccCCCceeE
Q 041215            4 IEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSD---GAFNFWDKDSKQRLKAMSRCGQPIPC   80 (136)
Q Consensus         4 ~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~d---g~v~vwd~~~~~~~~~~~~h~~~v~~   80 (136)
                      .+..+.+  ||.+ .+.+..+.  ..     .++.+.|+|+|++|+.++.+   |.|.+||..+...+..+. | ..+..
T Consensus        81 ~~~~v~l--yd~~-~~~i~~~~--~~-----~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~  148 (194)
T PF08662_consen   81 MPAKVTL--YDVK-GKKIFSFG--TQ-----PRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATD  148 (194)
T ss_pred             CCcccEE--EcCc-ccEeEeec--CC-----CceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEE
Confidence            3444544  6664 44445543  44     77899999999999998754   669999999888877763 3 34789


Q ss_pred             EEEccCCCEEEEEEc
Q 041215           81 STFNTDGSIFAYSVC   95 (136)
Q Consensus        81 v~~sp~~~~l~s~~~   95 (136)
                      ++|+|+|++++++..
T Consensus       149 ~~WsPdGr~~~ta~t  163 (194)
T PF08662_consen  149 VEWSPDGRYLATATT  163 (194)
T ss_pred             EEEcCCCCEEEEEEe
Confidence            999999999999865

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=98.97  E-value=1.1e-08  Score=75.43  Aligned_cols=88  Identities=15%  Similarity=0.200  Sum_probs=76.1

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS   81 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v   81 (136)
                      ++.|.+..+|+-  -+++.+-++.+|.+     .|+|++..-+...+++|+.|.++++||+++|+++.++ ....+|..+
T Consensus        28 caKD~~~~vw~s--~nGerlGty~GHtG-----avW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~-k~~~~Vk~~   99 (327)
T KOG0643|consen   28 CAKDSTPTVWYS--LNGERLGTYDGHTG-----AVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATW-KTNSPVKRV   99 (327)
T ss_pred             ecCCCCceEEEe--cCCceeeeecCCCc-----eEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEe-ecCCeeEEE
Confidence            567778887554  57889999999999     9999999999999999999999999999999999888 445899999


Q ss_pred             EEccCCCEEEEEEccc
Q 041215           82 TFNTDGSIFAYSVCYD   97 (136)
Q Consensus        82 ~~sp~~~~l~s~~~dd   97 (136)
                      .|+.+|.+++.+...-
T Consensus       100 ~F~~~gn~~l~~tD~~  115 (327)
T KOG0643|consen  100 DFSFGGNLILASTDKQ  115 (327)
T ss_pred             eeccCCcEEEEEehhh
Confidence            9999999888654433

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=98.97  E-value=2.7e-09  Score=78.04  Aligned_cols=110  Identities=15%  Similarity=0.161  Sum_probs=89.3

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcc--eeeecccCCCcee
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQ--RLKAMSRCGQPIP   79 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~--~~~~~~~h~~~v~   79 (136)
                      +|.|.+|++  |.+.+|....+++-.++     .|+.+.+.|++..|++++. ..|++||+.++.  .+.+|.+|...|.
T Consensus        16 A~YDhTIRf--Wqa~tG~C~rTiqh~ds-----qVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVt   87 (311)
T KOG0315|consen   16 AGYDHTIRF--WQALTGICSRTIQHPDS-----QVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVT   87 (311)
T ss_pred             ccCcceeee--eehhcCeEEEEEecCcc-----ceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceE
Confidence            678999988  77899999999987778     9999999999999988865 569999998753  5889999999999


Q ss_pred             EEEEccCCCEEEEEEccccccccccc---------CCCCCcceEEEEcCC
Q 041215           80 CSTFNTDGSIFAYSVCYDWSKGAENH---------NPATAKTYIYLHLPQ  120 (136)
Q Consensus        80 ~v~~sp~~~~l~s~~~dd~~~~~~~~---------~~~~~~~~~~~~~~~  120 (136)
                      .|.|..+|++..+|+.|...+.-+..         .+. +...+.+||=|
T Consensus        88 aVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~s-pVn~vvlhpnQ  136 (311)
T KOG0315|consen   88 AVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNS-PVNTVVLHPNQ  136 (311)
T ss_pred             EEEEeecCeEEEecCCCceEEEEeccCcccchhccCCC-CcceEEecCCc
Confidence            99999999999999998865544333         333 44555566544

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=98.96  E-value=3.9e-09  Score=78.84  Aligned_cols=83  Identities=19%  Similarity=0.373  Sum_probs=70.1

Q ss_pred             EEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeeccc-CCCceeEEEEccCCCE
Q 041215           11 HHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSR-CGQPIPCSTFNTDGSI   89 (136)
Q Consensus        11 ~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~-h~~~v~~v~~sp~~~~   89 (136)
                      +++|+-.|....++..+.. .-+.+ ...+|.|+++++++++.||.|.+|+++++..+..+.+ +.+++.|+.|+|...+
T Consensus       212 ~~lDAf~G~~~~tfs~~~~-~~~~~-~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~m  289 (311)
T KOG1446|consen  212 YLLDAFDGTVKSTFSGYPN-AGNLP-LSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAM  289 (311)
T ss_pred             EEEEccCCcEeeeEeeccC-CCCcc-eeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceee
Confidence            3488888888888888765 11112 4678999999999999999999999999999998888 6899999999999999


Q ss_pred             EEEEEc
Q 041215           90 FAYSVC   95 (136)
Q Consensus        90 l~s~~~   95 (136)
                      ++++++
T Consensus       290 f~sa~s  295 (311)
T KOG1446|consen  290 FVSASS  295 (311)
T ss_pred             eeecCc
Confidence            998865

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=98.96  E-value=1.4e-09  Score=82.76  Aligned_cols=88  Identities=14%  Similarity=0.206  Sum_probs=77.5

Q ss_pred             CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC   80 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~   80 (136)
                      .|+.|.+|.|  ||..+....+.+.+|.+     .|.|+.|..  +.+++|++|.+|++||+++++++.++-.|...|..
T Consensus       212 SGlrDnTiki--WD~n~~~c~~~L~GHtG-----SVLCLqyd~--rviisGSSDsTvrvWDv~tge~l~tlihHceaVLh  282 (499)
T KOG0281|consen  212 SGLRDNTIKI--WDKNSLECLKILTGHTG-----SVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLH  282 (499)
T ss_pred             cccccCceEE--eccccHHHHHhhhcCCC-----cEEeeeccc--eEEEecCCCceEEEEeccCCchhhHHhhhcceeEE
Confidence            4788999988  89899999999999999     999998864  69999999999999999999999999999999999


Q ss_pred             EEEccCCCEEEEEEccccc
Q 041215           81 STFNTDGSIFAYSVCYDWS   99 (136)
Q Consensus        81 v~~sp~~~~l~s~~~dd~~   99 (136)
                      +.|+  ..++++++.|--.
T Consensus       283 lrf~--ng~mvtcSkDrsi  299 (499)
T KOG0281|consen  283 LRFS--NGYMVTCSKDRSI  299 (499)
T ss_pred             EEEe--CCEEEEecCCcee
Confidence            9995  4578877776544

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=98.96  E-value=8.5e-09  Score=76.93  Aligned_cols=98  Identities=12%  Similarity=0.119  Sum_probs=80.4

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS   81 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v   81 (136)
                      |+.|..|-+|... ..-+....+++|.+     +|-.+.|.+++..+++++.|..|+.||+++|+++..+.+|..-|+++
T Consensus        65 gG~Dr~I~LWnv~-gdceN~~~lkgHsg-----AVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~  138 (338)
T KOG0265|consen   65 GGSDRAIVLWNVY-GDCENFWVLKGHSG-----AVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSL  138 (338)
T ss_pred             cCCcceEEEEecc-ccccceeeeccccc-----eeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeec
Confidence            5667777775511 23456778889999     99999999999999999999999999999999999999999999999


Q ss_pred             EEccCCC-EEEEEEccccccccccc
Q 041215           82 TFNTDGS-IFAYSVCYDWSKGAENH  105 (136)
Q Consensus        82 ~~sp~~~-~l~s~~~dd~~~~~~~~  105 (136)
                      .-+-.|. ++.+++.|...+.+++.
T Consensus       139 ~p~rrg~~lv~SgsdD~t~kl~D~R  163 (338)
T KOG0265|consen  139 DPSRRGPQLVCSGSDDGTLKLWDIR  163 (338)
T ss_pred             CccccCCeEEEecCCCceEEEEeec
Confidence            8555565 56666666678788777

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=98.96  E-value=3.6e-09  Score=81.65  Aligned_cols=93  Identities=18%  Similarity=0.175  Sum_probs=73.6

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCC--cee
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQ--PIP   79 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~--~v~   79 (136)
                      .+.|.++.+  +|.++.....++.... +.+...++.+.|+|++.++++|+.||.|+||++.++++...+.....  .|+
T Consensus       359 ssRDdtl~v--iDlRt~eI~~~~sA~g-~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~  435 (459)
T KOG0288|consen  359 SSRDDTLKV--IDLRTKEIRQTFSAEG-FKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAIT  435 (459)
T ss_pred             ecCCCceee--eecccccEEEEeeccc-cccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceE
Confidence            356777776  8888888777776432 12222578999999999999999999999999999998887766543  599


Q ss_pred             EEEEccCCCEEEEEEccc
Q 041215           80 CSTFNTDGSIFAYSVCYD   97 (136)
Q Consensus        80 ~v~~sp~~~~l~s~~~dd   97 (136)
                      +++|+|.|..+++++.+-
T Consensus       436 s~~W~~sG~~Llsadk~~  453 (459)
T KOG0288|consen  436 SLSWNPSGSGLLSADKQK  453 (459)
T ss_pred             EEEEcCCCchhhcccCCc
Confidence            999999999999876543

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.95  E-value=7.2e-09  Score=75.39  Aligned_cols=95  Identities=22%  Similarity=0.322  Sum_probs=74.5

Q ss_pred             ceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCc--ceeeecc--------
Q 041215            3 SIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSK--QRLKAMS--------   72 (136)
Q Consensus         3 s~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~--~~~~~~~--------   72 (136)
                      |-.|.-.+.+||..+++....|.+|.+     .|+.+.|+.+...+++|+.|..+++||.++.  +.++.+.        
T Consensus        76 s~GgDk~v~vwDV~TGkv~Rr~rgH~a-----qVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~S  150 (307)
T KOG0316|consen   76 SCGGDKAVQVWDVNTGKVDRRFRGHLA-----QVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSS  150 (307)
T ss_pred             cCCCCceEEEEEcccCeeeeecccccc-----eeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeE
Confidence            444555566799999999999999999     9999999999999999999999999997643  2222111        


Q ss_pred             ------------------------------cCCCceeEEEEccCCCEEEEEEcccccccc
Q 041215           73 ------------------------------RCGQPIPCSTFNTDGSIFAYSVCYDWSKGA  102 (136)
Q Consensus        73 ------------------------------~h~~~v~~v~~sp~~~~l~s~~~dd~~~~~  102 (136)
                                                    -...||+|++|++++.-.+.++-+....++
T Consensus       151 i~v~~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLl  210 (307)
T KOG0316|consen  151 IDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLL  210 (307)
T ss_pred             EEecccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeec
Confidence                                          125799999999999877777766654443

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=98.95  E-value=2.4e-09  Score=80.52  Aligned_cols=97  Identities=20%  Similarity=0.239  Sum_probs=75.7

Q ss_pred             CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeec---ccCCCc
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAM---SRCGQP   77 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~---~~h~~~   77 (136)
                      .||.|++|.+  ||.........++.   ++..++|.+++|||.|.+|+.|..-..+++||+.+.++....   .+|.+.
T Consensus       189 S~srD~tvKl--FDfsK~saKrA~K~---~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~a  263 (430)
T KOG0640|consen  189 SGSRDNTVKL--FDFSKTSAKRAFKV---FQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGA  263 (430)
T ss_pred             eccCCCeEEE--EecccHHHHHHHHH---hhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccc
Confidence            3788999987  76654433333332   222338999999999999999999999999999998775432   468899


Q ss_pred             eeEEEEccCCCEEEEEEcccccccc
Q 041215           78 IPCSTFNTDGSIFAYSVCYDWSKGA  102 (136)
Q Consensus        78 v~~v~~sp~~~~l~s~~~dd~~~~~  102 (136)
                      |++|.|++.+++.++|+.|+..++.
T Consensus       264 i~~V~Ys~t~~lYvTaSkDG~Iklw  288 (430)
T KOG0640|consen  264 ITQVRYSSTGSLYVTASKDGAIKLW  288 (430)
T ss_pred             eeEEEecCCccEEEEeccCCcEEee
Confidence            9999999999999999999865544

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=98.94  E-value=4.9e-09  Score=80.70  Aligned_cols=91  Identities=21%  Similarity=0.381  Sum_probs=79.2

Q ss_pred             CCceeceEEEEEeeCC-----CCcceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCcceeeecccC
Q 041215            1 VGSIEGRVGVHHLDDS-----QQSKNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQRLKAMSRC   74 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~-----~~~~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~h   74 (136)
                      .||.|-+|-||.+-..     ..++...|.+|..     .|.-+.|||-. +.|++++.|..|.+||+.+++.+.++. |
T Consensus        99 SgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~r-----rVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-h  172 (472)
T KOG0303|consen   99 SGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQR-----RVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-H  172 (472)
T ss_pred             cCCCCceEEEEECCCcccccCcccceEEEeecce-----eEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-C
Confidence            4788889988655322     2356788999999     99999999998 789999999999999999999888886 9


Q ss_pred             CCceeEEEEccCCCEEEEEEccc
Q 041215           75 GQPIPCSTFNTDGSIFAYSVCYD   97 (136)
Q Consensus        75 ~~~v~~v~~sp~~~~l~s~~~dd   97 (136)
                      .+.|.+++|+-+|.++++.+.|-
T Consensus       173 pd~i~S~sfn~dGs~l~TtckDK  195 (472)
T KOG0303|consen  173 PDMVYSMSFNRDGSLLCTTCKDK  195 (472)
T ss_pred             CCeEEEEEeccCCceeeeecccc
Confidence            99999999999999999998876

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=98.93  E-value=4.4e-09  Score=80.47  Aligned_cols=95  Identities=15%  Similarity=0.270  Sum_probs=80.1

Q ss_pred             CCceeceEEEEEeeCCCC---cceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCcc-eeeecccCC
Q 041215            1 VGSIEGRVGVHHLDDSQQ---SKNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQ-RLKAMSRCG   75 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~---~~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~-~~~~~~~h~   75 (136)
                      +||.|-.+++  ||++++   ....+|.+|.+     -|.++.|+|.. ..|++++.|+++++||+++.. .++.+.+|.
T Consensus       317 ~gssdr~irl--~DPR~~~gs~v~~s~~gH~n-----wVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~  389 (423)
T KOG0313|consen  317 SGSSDRHIRL--WDPRTGDGSVVSQSLIGHKN-----WVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHN  389 (423)
T ss_pred             ecCCCCceee--cCCCCCCCceeEEeeecchh-----hhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCC
Confidence            4788888988  999754   34678899999     99999999988 679999999999999999865 889999999


Q ss_pred             CceeEEEEccCCCEEEEEEccccccccc
Q 041215           76 QPIPCSTFNTDGSIFAYSVCYDWSKGAE  103 (136)
Q Consensus        76 ~~v~~v~~sp~~~~l~s~~~dd~~~~~~  103 (136)
                      +.|.++.|+..+ ++++|+.|.-...+.
T Consensus       390 DKvl~vdW~~~~-~IvSGGaD~~l~i~~  416 (423)
T KOG0313|consen  390 DKVLSVDWNEGG-LIVSGGADNKLRIFK  416 (423)
T ss_pred             ceEEEEeccCCc-eEEeccCcceEEEec
Confidence            999999997654 788888877665443

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.93  E-value=8.1e-10  Score=90.00  Aligned_cols=91  Identities=19%  Similarity=0.271  Sum_probs=84.3

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS   81 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v   81 (136)
                      ||.|+.+.+  ||.+..-+.+.+.+|..     .|..++|+|+|.+++.+++|..+++||...|..+.+|..|.+.++.+
T Consensus       130 gStdtd~~i--wD~Rk~Gc~~~~~s~~~-----vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sl  202 (825)
T KOG0267|consen  130 GSTDTDLKI--WDIRKKGCSHTYKSHTR-----VVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSL  202 (825)
T ss_pred             cccccccee--hhhhccCceeeecCCcc-----eeEEEeecCCCceeeccCCcceeeeeccccccccccccccccccccc
Confidence            788899988  88888888999999988     99999999999999999999999999999999999999999999999


Q ss_pred             EEccCCCEEEEEEccccc
Q 041215           82 TFNTDGSIFAYSVCYDWS   99 (136)
Q Consensus        82 ~~sp~~~~l~s~~~dd~~   99 (136)
                      .|+|...++++|+.|...
T Consensus       203 e~hp~e~Lla~Gs~d~tv  220 (825)
T KOG0267|consen  203 EFHPLEVLLAPGSSDRTV  220 (825)
T ss_pred             ccCchhhhhccCCCCcee
Confidence            999999999998887743

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=98.92  E-value=1.3e-08  Score=73.84  Aligned_cols=95  Identities=17%  Similarity=0.209  Sum_probs=75.1

Q ss_pred             CCceeceEEEEEeeCCCCcceeEEEe--eeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCce
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTFKC--HRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPI   78 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l~~--h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v   78 (136)
                      .||.|.+|+.  ||.+-+....++..  |.+.-+--.|.+++..|.|++|++|-.|....+||+.-+..++.+..|...|
T Consensus       199 sgsqdktirf--wdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadi  276 (350)
T KOG0641|consen  199 SGSQDKTIRF--WDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADI  276 (350)
T ss_pred             ccCCCceEEE--EeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccce
Confidence            4788999998  55554455444421  2221111278999999999999999999999999999999999999999999


Q ss_pred             eEEEEccCCCEEEEEEccc
Q 041215           79 PCSTFNTDGSIFAYSVCYD   97 (136)
Q Consensus        79 ~~v~~sp~~~~l~s~~~dd   97 (136)
                      .||.|+|...++++++-|.
T Consensus       277 r~vrfsp~a~yllt~syd~  295 (350)
T KOG0641|consen  277 RCVRFSPGAHYLLTCSYDM  295 (350)
T ss_pred             eEEEeCCCceEEEEecccc
Confidence            9999999999999875443

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.92  E-value=8.1e-09  Score=77.53  Aligned_cols=87  Identities=17%  Similarity=0.239  Sum_probs=72.1

Q ss_pred             CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC   80 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~   80 (136)
                      .|+.||.|.+  |+........++++|.+     .|+.++.||.+.+..+.+.|+.+++||+-+|.......-- ..-+.
T Consensus       102 S~sdDG~i~i--w~~~~W~~~~slK~H~~-----~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~-~~at~  173 (362)
T KOG0294|consen  102 SGSDDGHIII--WRVGSWELLKSLKAHKG-----QVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK-NKATL  173 (362)
T ss_pred             eecCCCcEEE--EEcCCeEEeeeeccccc-----ccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccC-Cccee
Confidence            3788999998  88888899999999999     9999999999999999999999999999988765544322 22344


Q ss_pred             EEEccCCCEEEEEEc
Q 041215           81 STFNTDGSIFAYSVC   95 (136)
Q Consensus        81 v~~sp~~~~l~s~~~   95 (136)
                      |.|+|.|.+++.+..
T Consensus       174 v~w~~~Gd~F~v~~~  188 (362)
T KOG0294|consen  174 VSWSPQGDHFVVSGR  188 (362)
T ss_pred             eEEcCCCCEEEEEec
Confidence            889999987776654

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=98.92  E-value=5.2e-09  Score=87.97  Aligned_cols=92  Identities=15%  Similarity=0.196  Sum_probs=80.8

Q ss_pred             CCceeceEEEEEeeC----------------CCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCC
Q 041215            1 VGSIEGRVGVHHLDD----------------SQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDS   64 (136)
Q Consensus         1 vgs~dG~v~i~~~d~----------------~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~   64 (136)
                      +||.|..|-||.++.                +..+....|.+|.+     .|..++|+|++.+|++++.|++|.+||..+
T Consensus        86 sGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~-----DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~t  160 (942)
T KOG0973|consen   86 SGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDS-----DVLDVNWSPDDSLLVSVSLDNSVIIWNAKT  160 (942)
T ss_pred             eccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCC-----ccceeccCCCccEEEEecccceEEEEcccc
Confidence            488899999988772                11235678889999     999999999999999999999999999999


Q ss_pred             cceeeecccCCCceeEEEEccCCCEEEEEEccc
Q 041215           65 KQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYD   97 (136)
Q Consensus        65 ~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd   97 (136)
                      .+.+..+.+|.+.|-.+.|.|-|+++|+-++|-
T Consensus       161 F~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDr  193 (942)
T KOG0973|consen  161 FELLKVLRGHQSLVKGVSWDPIGKYFASQSDDR  193 (942)
T ss_pred             ceeeeeeecccccccceEECCccCeeeeecCCc
Confidence            999999999999999999999999999865544

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.91  E-value=1.6e-09  Score=88.79  Aligned_cols=101  Identities=23%  Similarity=0.330  Sum_probs=84.8

Q ss_pred             CCceeceEEEEEeeCCC---CcceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCcceeeecccCCC
Q 041215            1 VGSIEGRVGVHHLDDSQ---QSKNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQRLKAMSRCGQ   76 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~---~~~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~   76 (136)
                      +++..|.|.+  ||...   .+++..|..|..     .+++++||+.. .+|++|+.||.|++||++......++.+-..
T Consensus       105 T~s~nG~i~v--Wdlnk~~rnk~l~~f~EH~R-----s~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSE  177 (839)
T KOG0269|consen  105 TCSTNGVISV--WDLNKSIRNKLLTVFNEHER-----SANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSE  177 (839)
T ss_pred             eecCCCcEEE--EecCccccchhhhHhhhhcc-----ceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccch
Confidence            3677899988  55544   778889999999     99999999887 7999999999999999999888888888888


Q ss_pred             ceeEEEEccC-CCEEEEEEcccccccccccCCC
Q 041215           77 PIPCSTFNTD-GSIFAYSVCYDWSKGAENHNPA  108 (136)
Q Consensus        77 ~v~~v~~sp~-~~~l~s~~~dd~~~~~~~~~~~  108 (136)
                      .|+.|.|+|. +..|+++...++....+...|.
T Consensus       178 SiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~  210 (839)
T KOG0269|consen  178 SIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD  210 (839)
T ss_pred             hhhceeeccCCCceEEEecCCceEEEeeccCch
Confidence            9999999996 4577777777777666776666

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.91  E-value=4.2e-09  Score=82.42  Aligned_cols=98  Identities=15%  Similarity=0.250  Sum_probs=79.8

Q ss_pred             CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCcceeeecccCCCcee
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIP   79 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~   79 (136)
                      +|..+|.|.+  ||.++...+..+.+|+.     +|..+.|+|++ ..|++|++|+.+++||+.+......+.+|.+-|.
T Consensus        85 aGD~sG~V~v--fD~k~r~iLR~~~ah~a-----pv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR  157 (487)
T KOG0310|consen   85 AGDESGHVKV--FDMKSRVILRQLYAHQA-----PVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVR  157 (487)
T ss_pred             ccCCcCcEEE--eccccHHHHHHHhhccC-----ceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeE
Confidence            3566788877  88777778899999999     99999999988 6788888899999999998877668899999999


Q ss_pred             EEEEccCCC-EEEEEEccccccccccc
Q 041215           80 CSTFNTDGS-IFAYSVCYDWSKGAENH  105 (136)
Q Consensus        80 ~v~~sp~~~-~l~s~~~dd~~~~~~~~  105 (136)
                      |.+|+|... +++||+-|...++.+-.
T Consensus       158 ~g~~~~~~~hivvtGsYDg~vrl~DtR  184 (487)
T KOG0310|consen  158 CGDISPANDHIVVTGSYDGKVRLWDTR  184 (487)
T ss_pred             eeccccCCCeEEEecCCCceEEEEEec
Confidence            999999866 66666555555554443

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=98.91  E-value=3.6e-09  Score=78.84  Aligned_cols=87  Identities=23%  Similarity=0.365  Sum_probs=68.5

Q ss_pred             eeceEEEEEeeCCCCcceeEEE-eeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCC-cceeeecccCCCceeE
Q 041215            4 IEGRVGVHHLDDSQQSKNFTFK-CHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDS-KQRLKAMSRCGQPIPC   80 (136)
Q Consensus         4 ~dG~v~i~~~d~~~~~~~~~l~-~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~-~~~~~~~~~h~~~v~~   80 (136)
                      .|+++.  .||.++......+. .|..     .|..+.|+|+- ..|++|++||.|++||.+. ...+.++.+|..+|.+
T Consensus       191 ~d~tl~--~~D~RT~~~~~sI~dAHgq-----~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~  263 (370)
T KOG1007|consen  191 SDSTLQ--FWDLRTMKKNNSIEDAHGQ-----RVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWA  263 (370)
T ss_pred             CCCcEE--EEEccchhhhcchhhhhcc-----eeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEE
Confidence            355554  48888776666554 4655     89999999998 6899999999999999985 5678899999999999


Q ss_pred             EEEccCCCEEEEEEccc
Q 041215           81 STFNTDGSIFAYSVCYD   97 (136)
Q Consensus        81 v~~sp~~~~l~s~~~dd   97 (136)
                      |.|+|....|+..++.|
T Consensus       264 VRfn~~hdqLiLs~~SD  280 (370)
T KOG1007|consen  264 VRFNPEHDQLILSGGSD  280 (370)
T ss_pred             EEecCccceEEEecCCC
Confidence            99999776544444444

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=98.91  E-value=1.5e-09  Score=86.19  Aligned_cols=77  Identities=14%  Similarity=0.171  Sum_probs=68.0

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS   81 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v   81 (136)
                      .|.||.++|  ||-.+.+.+-.++..-+     ...|++|+|||+++++|+.|..|.||.+..++++..=.+|.++|..|
T Consensus       308 VSqDGfLRv--F~fdt~eLlg~mkSYFG-----GLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~V  380 (636)
T KOG2394|consen  308 VSQDGFLRI--FDFDTQELLGVMKSYFG-----GLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVV  380 (636)
T ss_pred             EecCceEEE--eeccHHHHHHHHHhhcc-----ceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeE
Confidence            478999999  55455566666677777     89999999999999999999999999999999999989999999999


Q ss_pred             EEcc
Q 041215           82 TFNT   85 (136)
Q Consensus        82 ~~sp   85 (136)
                      +|.|
T Consensus       381 aFDp  384 (636)
T KOG2394|consen  381 AFDP  384 (636)
T ss_pred             eecc
Confidence            9986

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=98.91  E-value=1.2e-08  Score=82.86  Aligned_cols=85  Identities=19%  Similarity=0.346  Sum_probs=76.1

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS   81 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v   81 (136)
                      ||.|.++++  ||..++....++.+|.+     .|.++...+  ..+++|+.|.+|++|+++++.++..+.+|.++|++|
T Consensus       267 gS~D~t~rv--Wd~~sg~C~~~l~gh~s-----tv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v  337 (537)
T KOG0274|consen  267 GSTDKTERV--WDCSTGECTHSLQGHTS-----SVRCLTIDP--FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCV  337 (537)
T ss_pred             EecCCcEEe--EecCCCcEEEEecCCCc-----eEEEEEccC--ceEeeccCCceEEEEeccCcceEEEeccccccEEEE
Confidence            788999999  77899999999999999     888887754  678889999999999999999999999999999999


Q ss_pred             EEccCCCEEEEEEccc
Q 041215           82 TFNTDGSIFAYSVCYD   97 (136)
Q Consensus        82 ~~sp~~~~l~s~~~dd   97 (136)
                      .++  +.++++|+.|.
T Consensus       338 ~~~--~~~lvsgs~d~  351 (537)
T KOG0274|consen  338 QLD--EPLLVSGSYDG  351 (537)
T ss_pred             Eec--CCEEEEEecCc
Confidence            997  77888877766

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=98.90  E-value=1e-08  Score=76.54  Aligned_cols=89  Identities=18%  Similarity=0.310  Sum_probs=63.4

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEE-----------------------------------------
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLN-----------------------------------------   40 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~-----------------------------------------   40 (136)
                      |.+|+.|.+  ||++.+...+++.+|..     +|+.++                                         
T Consensus       192 ggIdn~ikv--Wd~r~~d~~~~lsGh~D-----tIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hn  264 (338)
T KOG0265|consen  192 GGIDNDIKV--WDLRKNDGLYTLSGHAD-----TITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHN  264 (338)
T ss_pred             ccccCceee--eccccCcceEEeecccC-----ceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhh
Confidence            667888877  88888888888888876     555444                                         


Q ss_pred             ---------EeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEccc
Q 041215           41 ---------FHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYD   97 (136)
Q Consensus        41 ---------~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd   97 (136)
                               |+|++..+..++.|..+++||......+..+++|.+.|++++|+|...++.++++|-
T Consensus       265 feknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk  330 (338)
T KOG0265|consen  265 FEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDK  330 (338)
T ss_pred             hhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCc
Confidence                     455555555555555566666655566666778888888888888888888887764

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.88  E-value=4.3e-09  Score=86.23  Aligned_cols=93  Identities=22%  Similarity=0.302  Sum_probs=84.3

Q ss_pred             CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC   80 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~   80 (136)
                      ||-.||.|.|  |+..+.....+|.+|..     +|+++.|...|..|++|+.|+.|-+||+-...-...+.+|.+.|+.
T Consensus        82 VGYaDGsVqi--f~~~s~~~~~tfngHK~-----AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~  154 (888)
T KOG0306|consen   82 VGYADGSVQI--FSLESEEILITFNGHKA-----AVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQ  154 (888)
T ss_pred             EEecCceEEe--eccCCCceeeeeccccc-----ceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhH
Confidence            5778999998  77777789999999999     9999999999999999999999999999877778899999999999


Q ss_pred             EEEccCCCEEEEEEcccccc
Q 041215           81 STFNTDGSIFAYSVCYDWSK  100 (136)
Q Consensus        81 v~~sp~~~~l~s~~~dd~~~  100 (136)
                      +-|..+..++++.+.|.+.+
T Consensus       155 ~~F~~~~~~lvS~sKDs~iK  174 (888)
T KOG0306|consen  155 ALFLNGDSFLVSVSKDSMIK  174 (888)
T ss_pred             HhccCCCeEEEEeccCceEE
Confidence            99999888999998888543

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=98.87  E-value=1.8e-08  Score=81.79  Aligned_cols=88  Identities=17%  Similarity=0.228  Sum_probs=78.8

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS   81 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v   81 (136)
                      ||.|-+|.+  |+..+++.+.++.+|..     +|.++.++  +.++++|+.|++|.+||+.+++++..+.+|...|.++
T Consensus       307 gs~D~tVkV--W~v~n~~~l~l~~~h~~-----~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl  377 (537)
T KOG0274|consen  307 GSRDNTVKV--WDVTNGACLNLLRGHTG-----PVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSL  377 (537)
T ss_pred             ccCCceEEE--EeccCcceEEEeccccc-----cEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEE
Confidence            689999998  66688999999999999     99999998  7899999999999999999999999999999999999


Q ss_pred             EEccCCCEEEEEEccccc
Q 041215           82 TFNTDGSIFAYSVCYDWS   99 (136)
Q Consensus        82 ~~sp~~~~l~s~~~dd~~   99 (136)
                      .+.+. ..+++|+-|...
T Consensus       378 ~~~~~-~~~~Sgs~D~~I  394 (537)
T KOG0274|consen  378 IVDSE-NRLLSGSLDTTI  394 (537)
T ss_pred             EecCc-ceEEeeeeccce
Confidence            88666 788888777533

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=98.87  E-value=2.7e-09  Score=81.30  Aligned_cols=67  Identities=12%  Similarity=0.251  Sum_probs=49.6

Q ss_pred             CccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEcccccccc
Q 041215           32 EIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGA  102 (136)
Q Consensus        32 ~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd~~~~~  102 (136)
                      |.++|+.+.|..  .++++++.|.+|++|++.+++.+.++.+|...|-|++|  .++++++|++|.....+
T Consensus       319 HrAaVNvVdfd~--kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlw  385 (499)
T KOG0281|consen  319 HRAAVNVVDFDD--KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLW  385 (499)
T ss_pred             hhhheeeecccc--ceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEE
Confidence            344666666643  57888888888888888888888888888877888777  77888888887754433

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=98.87  E-value=1.2e-08  Score=75.08  Aligned_cols=91  Identities=16%  Similarity=0.200  Sum_probs=80.9

Q ss_pred             CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC   80 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~   80 (136)
                      +||.|..+++  ||+........+.-++-     +|..++|+-+|++|++++.|..|-|=++++|..+.++ .+.++.+.
T Consensus       206 ~GsADAlvSL--WD~~ELiC~R~isRldw-----pVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI-~~~~~t~t  277 (313)
T KOG1407|consen  206 TGSADALVSL--WDVDELICERCISRLDW-----PVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEI-PCEGPTFT  277 (313)
T ss_pred             eccccceeec--cChhHhhhheeeccccC-----ceEEEEeccCcceeeccCccceEEeEecccCCeEEEe-eccCCcee
Confidence            5888999988  88887778888888888     9999999999999999999999999999999998888 56789999


Q ss_pred             EEEccCCCEEEEEEccccc
Q 041215           81 STFNTDGSIFAYSVCYDWS   99 (136)
Q Consensus        81 v~~sp~~~~l~s~~~dd~~   99 (136)
                      |+|+|...+||.+++|--.
T Consensus       278 VAWHPk~~LLAyA~ddk~~  296 (313)
T KOG1407|consen  278 VAWHPKRPLLAYACDDKDG  296 (313)
T ss_pred             EEecCCCceeeEEecCCCC
Confidence            9999999999998776443

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=98.87  E-value=1.5e-08  Score=77.62  Aligned_cols=95  Identities=17%  Similarity=0.259  Sum_probs=74.7

Q ss_pred             CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCC---CEEEEEcCCCcEEEEeCCCcce----eeeccc
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIH---HTFATAGSDGAFNFWDKDSKQR----LKAMSR   73 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~---~~l~s~~~dg~v~vwd~~~~~~----~~~~~~   73 (136)
                      .|+.||++++  ||. .|+..+++.+|.+     +|..++|.-..   ..|++++.|.++++|-.+.+..    +....+
T Consensus       120 tgsYDg~~ri--Wd~-~Gk~~~~~~Ght~-----~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~G  191 (423)
T KOG0313|consen  120 TGSYDGTSRI--WDL-KGKSIKTIVGHTG-----PIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRG  191 (423)
T ss_pred             EeecCCeeEE--Eec-CCceEEEEecCCc-----ceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcc
Confidence            3789999999  543 4788899999999     99988885333   4699999999999998876543    344459


Q ss_pred             CCCceeEEEEccCCCEEEEEEcccccccccc
Q 041215           74 CGQPIPCSTFNTDGSIFAYSVCYDWSKGAEN  104 (136)
Q Consensus        74 h~~~v~~v~~sp~~~~l~s~~~dd~~~~~~~  104 (136)
                      |...|.+|+..+++..+++|+ +|-...++.
T Consensus       192 Hk~~V~sVsv~~sgtr~~SgS-~D~~lkiWs  221 (423)
T KOG0313|consen  192 HKRSVDSVSVDSSGTRFCSGS-WDTMLKIWS  221 (423)
T ss_pred             cccceeEEEecCCCCeEEeec-ccceeeecc
Confidence            999999999999999999764 554444544

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=98.87  E-value=8e-09  Score=77.77  Aligned_cols=62  Identities=18%  Similarity=0.188  Sum_probs=57.4

Q ss_pred             eeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEccc
Q 041215           36 VNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYD   97 (136)
Q Consensus        36 v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd   97 (136)
                      ..|+.|++.|.+|+.|..+|.|-+||+.+......+.+|--+|+|++||++|+.|+|++.|.
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~   87 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDW   87 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCc
Confidence            57999999999999999999999999999888888999999999999999999999876654

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=98.86  E-value=8.2e-09  Score=77.20  Aligned_cols=89  Identities=24%  Similarity=0.330  Sum_probs=73.2

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCC-EEEEEcCCCcEEEEeCCCc-cee-----------
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHH-TFATAGSDGAFNFWDKDSK-QRL-----------   68 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~-~l~s~~~dg~v~vwd~~~~-~~~-----------   68 (136)
                      |..|-.|++  .|..++...++|.+|+.     .|.++.|+|... .|++|+.||.|++||+..- .+.           
T Consensus       164 gtr~~~VrL--CDi~SGs~sH~LsGHr~-----~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~  236 (397)
T KOG4283|consen  164 GTRDVQVRL--CDIASGSFSHTLSGHRD-----GVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRP  236 (397)
T ss_pred             ecCCCcEEE--EeccCCcceeeeccccC-----ceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccC
Confidence            445555665  88899999999999999     999999999985 6889999999999998642 122           


Q ss_pred             ---eecccCCCceeEEEEccCCCEEEEEEccc
Q 041215           69 ---KAMSRCGQPIPCSTFNTDGSIFAYSVCYD   97 (136)
Q Consensus        69 ---~~~~~h~~~v~~v~~sp~~~~l~s~~~dd   97 (136)
                         ..-..|.+.|+.++|+.++.++++++.|+
T Consensus       237 p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~  268 (397)
T KOG4283|consen  237 PILKTNTAHYGKVNGLAWTSDARYLASCGTDD  268 (397)
T ss_pred             ccccccccccceeeeeeecccchhhhhccCcc
Confidence               22335789999999999999999988877

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.84  E-value=1.1e-08  Score=53.94  Aligned_cols=38  Identities=34%  Similarity=0.599  Sum_probs=35.8

Q ss_pred             cceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEe
Q 041215           19 SKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWD   61 (136)
Q Consensus        19 ~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd   61 (136)
                      +...++.+|.+     .|.+|+|+|++.+|++++.|+.|++||
T Consensus         2 ~~~~~~~~h~~-----~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSS-----SINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSS-----SEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCC-----cEEEEEEecccccceeeCCCCEEEEEC
Confidence            56788999999     999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.82  E-value=5.2e-08  Score=77.71  Aligned_cols=100  Identities=20%  Similarity=0.344  Sum_probs=82.8

Q ss_pred             CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcC--CCcEEEEeCCCcceeeecccCCCc
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGS--DGAFNFWDKDSKQRLKAMSRCGQP   77 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~--dg~v~vwd~~~~~~~~~~~~h~~~   77 (136)
                      .|..|..+.|  ||.....+...+..|..     +|-+++|+|.. .+|++|+-  |+.|++||+.++..+... ....+
T Consensus       318 SGgnDN~~~I--wd~~~~~p~~~~~~H~a-----AVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~v-dtgsQ  389 (484)
T KOG0305|consen  318 SGGNDNVVFI--WDGLSPEPKFTFTEHTA-----AVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSV-DTGSQ  389 (484)
T ss_pred             cCCCccceEe--ccCCCccccEEEeccce-----eeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccc-ccCCc
Confidence            3678888988  77788889999999999     99999999988 68888774  789999999999888777 55689


Q ss_pred             eeEEEEccCCCEEEEEEcccccccccccCCC
Q 041215           78 IPCSTFNTDGSIFAYSVCYDWSKGAENHNPA  108 (136)
Q Consensus        78 v~~v~~sp~~~~l~s~~~dd~~~~~~~~~~~  108 (136)
                      |.+|.|++...-++++.++......-|.+|.
T Consensus       390 VcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps  420 (484)
T KOG0305|consen  390 VCSLIWSKKYKELLSTHGYSENQITLWKYPS  420 (484)
T ss_pred             eeeEEEcCCCCEEEEecCCCCCcEEEEeccc
Confidence            9999999999988888776655444555544

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=98.82  E-value=1.2e-08  Score=77.23  Aligned_cols=100  Identities=15%  Similarity=0.220  Sum_probs=75.7

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCC--CCEEEEEcCCCcEEEEeCCCcceeeec--------
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPI--HHTFATAGSDGAFNFWDKDSKQRLKAM--------   71 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~--~~~l~s~~~dg~v~vwd~~~~~~~~~~--------   71 (136)
                      +-..|.|++  ||..+++.+..|+++..     .++.++|...  .+.+.+|+.||+|++||++.......+        
T Consensus        46 ~lSngsv~l--yd~~tg~~l~~fk~~~~-----~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~  118 (376)
T KOG1188|consen   46 SLSNGSVRL--YDKGTGQLLEEFKGPPA-----TTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGT  118 (376)
T ss_pred             EecCCeEEE--EeccchhhhheecCCCC-----cccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCC
Confidence            345788887  88888999999999998     9999999763  488999999999999997642211100        


Q ss_pred             -------------------------------------------ccCCCceeEEEEccCC-CEEEEEEcccccccccccCC
Q 041215           72 -------------------------------------------SRCGQPIPCSTFNTDG-SIFAYSVCYDWSKGAENHNP  107 (136)
Q Consensus        72 -------------------------------------------~~h~~~v~~v~~sp~~-~~l~s~~~dd~~~~~~~~~~  107 (136)
                                                                 ..|.+.|++++|+|+. .+|++|+.|+..-.|+.+.+
T Consensus       119 ~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d  198 (376)
T KOG1188|consen  119 PFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD  198 (376)
T ss_pred             cceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence                                                       0478889999999865 57888888887766666544


Q ss_pred             C
Q 041215          108 A  108 (136)
Q Consensus       108 ~  108 (136)
                      +
T Consensus       199 ~  199 (376)
T KOG1188|consen  199 N  199 (376)
T ss_pred             c
Confidence            3

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=98.81  E-value=1.2e-08  Score=85.83  Aligned_cols=85  Identities=16%  Similarity=0.258  Sum_probs=74.2

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccC------C
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRC------G   75 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h------~   75 (136)
                      +|.|.+|.|  |+.++...+..+.+|.+     .|-.+.|.|.|++|++-++|++|++|++.+..+.+.+..+      .
T Consensus       147 ~s~DnsVii--wn~~tF~~~~vl~~H~s-----~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~  219 (942)
T KOG0973|consen  147 VSLDNSVII--WNAKTFELLKVLRGHQS-----LVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLT  219 (942)
T ss_pred             ecccceEEE--Eccccceeeeeeecccc-----cccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCc
Confidence            678999988  88899999999999999     9999999999999999999999999998776666655543      3


Q ss_pred             CceeEEEEccCCCEEEEE
Q 041215           76 QPIPCSTFNTDGSIFAYS   93 (136)
Q Consensus        76 ~~v~~v~~sp~~~~l~s~   93 (136)
                      .-+..+.|||||.+|++.
T Consensus       220 T~f~RlSWSPDG~~las~  237 (942)
T KOG0973|consen  220 TFFLRLSWSPDGHHLASP  237 (942)
T ss_pred             ceeeecccCCCcCeecch
Confidence            466789999999999986

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.81  E-value=7.7e-09  Score=80.32  Aligned_cols=95  Identities=15%  Similarity=0.300  Sum_probs=73.8

Q ss_pred             CCceeceEEEEEeeCCCC-cceeEEE------------------eeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEE
Q 041215            1 VGSIEGRVGVHHLDDSQQ-SKNFTFK------------------CHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFW   60 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~-~~~~~l~------------------~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vw   60 (136)
                      +|+.|-.|.||.+|+... .+..+|.                  +|..     .|..++|+..- +.|++||.|.+|.+|
T Consensus       197 iGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTd-----avl~Ls~n~~~~nVLaSgsaD~TV~lW  271 (463)
T KOG0270|consen  197 IGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTD-----AVLALSWNRNFRNVLASGSADKTVKLW  271 (463)
T ss_pred             EeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchH-----HHHHHHhccccceeEEecCCCceEEEE
Confidence            578899999988887532 2333332                  3555     88899998666 789999999999999


Q ss_pred             eCCCcceeeecccCCCceeEEEEccCCC-EEEEEEcccccc
Q 041215           61 DKDSKQRLKAMSRCGQPIPCSTFNTDGS-IFAYSVCYDWSK  100 (136)
Q Consensus        61 d~~~~~~~~~~~~h~~~v~~v~~sp~~~-~l~s~~~dd~~~  100 (136)
                      |+.++++...+..|.+.|++++|+|... ++++|+-|....
T Consensus       272 D~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~  312 (463)
T KOG0270|consen  272 DVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVA  312 (463)
T ss_pred             EcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEE
Confidence            9999999999988999999999999765 566665444433

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.81  E-value=5.7e-09  Score=76.15  Aligned_cols=93  Identities=19%  Similarity=0.240  Sum_probs=74.3

Q ss_pred             CCceeceEEEEEeeCCCC-cceeEEEeeeCCCCccceeEEEEeCC---C-----------CEEEEEcCCCcEEEEeCCCc
Q 041215            1 VGSIEGRVGVHHLDDSQQ-SKNFTFKCHRDGSEIYSVNSLNFHPI---H-----------HTFATAGSDGAFNFWDKDSK   65 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~-~~~~~l~~h~~~~~~~~v~~l~~~p~---~-----------~~l~s~~~dg~v~vwd~~~~   65 (136)
                      +||.||.|++..++...+ .......+|.-     .|++++|.|-   |           ..|++|+.|..|++|...++
T Consensus       121 casSDG~vsvl~~~~~g~w~t~ki~~aH~~-----GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~  195 (299)
T KOG1332|consen  121 CASSDGKVSVLTYDSSGGWTTSKIVFAHEI-----GVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD  195 (299)
T ss_pred             EeeCCCcEEEEEEcCCCCccchhhhhcccc-----ccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc
Confidence            589999999977877633 33455678888     9999999987   3           35999999999999999875


Q ss_pred             --ceeeecccCCCceeEEEEccCC----CEEEEEEcccc
Q 041215           66 --QRLKAMSRCGQPIPCSTFNTDG----SIFAYSVCYDW   98 (136)
Q Consensus        66 --~~~~~~~~h~~~v~~v~~sp~~----~~l~s~~~dd~   98 (136)
                        ...+.+.+|.+.|+.++|.|.-    ..+|+++.|..
T Consensus       196 ~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~  234 (299)
T KOG1332|consen  196 SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGT  234 (299)
T ss_pred             chhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCc
Confidence              2345688999999999999964    46888777763

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.80  E-value=1.2e-08  Score=83.76  Aligned_cols=91  Identities=27%  Similarity=0.408  Sum_probs=80.3

Q ss_pred             CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC   80 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~   80 (136)
                      .||.|.+|.+|-+|-  |.....|-+|+.     .|-++.|.|..+++++++.|+.|+.||-..-..++.+.+|...|.|
T Consensus       567 TgSADKnVKiWGLdF--GDCHKS~fAHdD-----Svm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~c  639 (888)
T KOG0306|consen  567 TGSADKNVKIWGLDF--GDCHKSFFAHDD-----SVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWC  639 (888)
T ss_pred             eccCCCceEEecccc--chhhhhhhcccC-----ceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeee
Confidence            378899999976654  466667777777     9999999999999999999999999999999999999999999999


Q ss_pred             EEEccCCCEEEEEEcccc
Q 041215           81 STFNTDGSIFAYSVCYDW   98 (136)
Q Consensus        81 v~~sp~~~~l~s~~~dd~   98 (136)
                      ++.+|+|.++++++.|--
T Consensus       640 Lav~~~G~~vvs~shD~s  657 (888)
T KOG0306|consen  640 LAVSPNGSFVVSSSHDKS  657 (888)
T ss_pred             eEEcCCCCeEEeccCCce
Confidence            999999999999877553

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.79  E-value=7e-09  Score=80.31  Aligned_cols=86  Identities=16%  Similarity=0.205  Sum_probs=66.0

Q ss_pred             EEeeCCCCcceeEEEeeeCCCCccceeEEEEeC-CCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCC-C
Q 041215           11 HHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHP-IHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDG-S   88 (136)
Q Consensus        11 ~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p-~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~-~   88 (136)
                      .+||.+..+....+.+|+.  -. -+-.-+|.. +..++++|+.|+.|++|+-.++..+.++++|...|+||+|+|.. .
T Consensus       420 ~LWDl~e~~lv~kY~Ghkq--~~-fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~  496 (519)
T KOG0293|consen  420 HLWDLEENKLVRKYFGHKQ--GH-FIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPE  496 (519)
T ss_pred             EEeecchhhHHHHhhcccc--cc-eEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHH
Confidence            3466666677777777764  11 233445643 34899999999999999999999999999999999999999976 4


Q ss_pred             EEEEEEccccc
Q 041215           89 IFAYSVCYDWS   99 (136)
Q Consensus        89 ~l~s~~~dd~~   99 (136)
                      ++|+|+.|+..
T Consensus       497 m~ASasDDgtI  507 (519)
T KOG0293|consen  497 MFASASDDGTI  507 (519)
T ss_pred             HhhccCCCCeE
Confidence            78877766644

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.77  E-value=4.1e-08  Score=74.26  Aligned_cols=124  Identities=18%  Similarity=0.266  Sum_probs=93.7

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCC-cceeeecccCCCceeE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDS-KQRLKAMSRCGQPIPC   80 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~-~~~~~~~~~h~~~v~~   80 (136)
                      ||+|-+-.+  ||.+++.....|.+|+.     ..+.++-||..+++++.+.|-+.++||+.. -..+..|.+|.+.|++
T Consensus       290 aSWDRTAnl--wDVEtge~v~~LtGHd~-----ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS  362 (481)
T KOG0300|consen  290 ASWDRTANL--WDVETGEVVNILTGHDS-----ELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTS  362 (481)
T ss_pred             eecccccee--eeeccCceeccccCcch-----hccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeE
Confidence            678888766  89999999999999999     999999999999999999999999999974 3556789999999999


Q ss_pred             EEEccCCCEEEEEEccc----ccc-----------------------cc-cccCCCCCcceEEEEcCCcccccccCCCCC
Q 041215           81 STFNTDGSIFAYSVCYD----WSK-----------------------GA-ENHNPATAKTYIYLHLPQETEVKGKPRAGT  132 (136)
Q Consensus        81 v~~sp~~~~l~s~~~dd----~~~-----------------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (136)
                      +.|+-+.+.+ +|+.|-    |..                       +. -.+.|- +--.++++.++-+.+-|-||--+
T Consensus       363 ~vF~~dd~vV-SgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPh-DNRqvRlfDlnG~RlaRlPrtsR  440 (481)
T KOG0300|consen  363 VVFNTDDRVV-SGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPH-DNRQVRLFDLNGNRLARLPRTSR  440 (481)
T ss_pred             EEEecCCcee-ecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEecc-CCceEEEEecCCCccccCCcccc
Confidence            9999887644 454443    221                       11 111222 44556677777777777666544


Q ss_pred             CC
Q 041215          133 SG  134 (136)
Q Consensus       133 ~~  134 (136)
                      .|
T Consensus       441 qg  442 (481)
T KOG0300|consen  441 QG  442 (481)
T ss_pred             cc
Confidence            43

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=98.77  E-value=2.5e-08  Score=73.17  Aligned_cols=99  Identities=13%  Similarity=0.277  Sum_probs=76.5

Q ss_pred             CceeceEEEEEeeCC-CCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215            2 GSIEGRVGVHHLDDS-QQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC   80 (136)
Q Consensus         2 gs~dG~v~i~~~d~~-~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~   80 (136)
                      |+.|..++|  ||.+ ...+...+.+|.+     .|..+-|....+.+.+.+.|+.|++||..++..++.+ ....+|++
T Consensus       118 gg~ekllrv--fdln~p~App~E~~ghtg-----~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL-~~~s~VtS  189 (334)
T KOG0278|consen  118 GGQEKLLRV--FDLNRPKAPPKEISGHTG-----GIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSL-EFNSPVTS  189 (334)
T ss_pred             cchHHHhhh--hhccCCCCCchhhcCCCC-----cceeEEEeccCceEEeeccCCceEEEEeccCcEEEEE-ecCCCCcc
Confidence            566777777  7664 3456677889999     9999999766677778899999999999999988887 45589999


Q ss_pred             EEEccCCCEEEEEEccc--------ccccccccCCC
Q 041215           81 STFNTDGSIFAYSVCYD--------WSKGAENHNPA  108 (136)
Q Consensus        81 v~~sp~~~~l~s~~~dd--------~~~~~~~~~~~  108 (136)
                      +.++++|+++.++-+..        +.++..+.+|.
T Consensus       190 lEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~  225 (334)
T KOG0278|consen  190 LEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPC  225 (334)
T ss_pred             eeeccCCCEEEEecCceeEEeccccccceeeccCcc
Confidence            99999999988764422        44455555555

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=98.76  E-value=1.2e-07  Score=74.09  Aligned_cols=105  Identities=16%  Similarity=0.187  Sum_probs=82.5

Q ss_pred             CCceeceEEEEEeeCCCCcceeEEE-eeeC------CCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCc----ceee
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTFK-CHRD------GSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSK----QRLK   69 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l~-~h~~------~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~----~~~~   69 (136)
                      .||.+|.|.+  |+.-+.+++++.. .|.-      .+.++-|++++..|...++++|+.+|.|++|-+..+    ..+.
T Consensus       343 sGSdnG~IaL--Ws~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~  420 (479)
T KOG0299|consen  343 SGSDNGSIAL--WSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLY  420 (479)
T ss_pred             eccCCceEEE--eeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceee
Confidence            4899999988  5556667776654 2321      334457889999999999999999999999998876    3344


Q ss_pred             ecccCCCceeEEEEccCCCEEEEEEcccccccccccCCC
Q 041215           70 AMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAENHNPA  108 (136)
Q Consensus        70 ~~~~h~~~v~~v~~sp~~~~l~s~~~dd~~~~~~~~~~~  108 (136)
                      .++ -.+.|++++|+++|..+++|.+-....+.++....
T Consensus       421 ~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~~k~  458 (479)
T KOG0299|consen  421 SLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWCLKS  458 (479)
T ss_pred             ecc-cccEEEEEEEccCCCEEEEecccccccceeeEeec
Confidence            444 46899999999999988889888888888887665

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=98.76  E-value=2.1e-08  Score=76.80  Aligned_cols=72  Identities=21%  Similarity=0.353  Sum_probs=60.6

Q ss_pred             EEEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCc---ceeeecccCCCceeEEEEccCCCEEEEEEcccc
Q 041215           23 TFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDSK---QRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDW   98 (136)
Q Consensus        23 ~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~---~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd~   98 (136)
                      .|.+|..     .|..+.|+|.. ..|++|+.|++|+|||++.+   .++.+ ..|.+.|+-|.|+-...+||+|+.++.
T Consensus       252 Pf~gH~~-----SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt  325 (440)
T KOG0302|consen  252 PFTGHTK-----SVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGT  325 (440)
T ss_pred             ccccccc-----chhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccCCcceeeecCCCce
Confidence            3456777     99999999988 79999999999999999987   44444 789999999999999888998877775


Q ss_pred             cc
Q 041215           99 SK  100 (136)
Q Consensus        99 ~~  100 (136)
                      .+
T Consensus       326 ~~  327 (440)
T KOG0302|consen  326 LS  327 (440)
T ss_pred             EE
Confidence            43

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=98.76  E-value=2.7e-08  Score=73.35  Aligned_cols=91  Identities=16%  Similarity=0.196  Sum_probs=71.1

Q ss_pred             CceeceEEEEEeeCCCCcc-e-eEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCcee
Q 041215            2 GSIEGRVGVHHLDDSQQSK-N-FTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIP   79 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~-~-~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~   79 (136)
                      |+.+-.+..|.++-.++.. + ..+.-..-     .|..++.-||+..+++++.|+.|++|+.+++..+..+..|.+.|+
T Consensus       223 gga~dkl~~~Sl~~s~gslq~~~e~~lknp-----Gv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn  297 (323)
T KOG0322|consen  223 GGADDKLVMYSLNHSTGSLQIRKEITLKNP-----GVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVN  297 (323)
T ss_pred             CCccccceeeeeccccCcccccceEEecCC-----CccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhccee
Confidence            4445555555665554322 2 22222222     688999999999999999999999999999999999999999999


Q ss_pred             EEEEccCCCEEEEEEccc
Q 041215           80 CSTFNTDGSIFAYSVCYD   97 (136)
Q Consensus        80 ~v~~sp~~~~l~s~~~dd   97 (136)
                      +++|+|+..++|+|+.|.
T Consensus       298 ~vAfspd~~lmAaaskD~  315 (323)
T KOG0322|consen  298 AVAFSPDCELMAAASKDA  315 (323)
T ss_pred             EEEeCCCCchhhhccCCc
Confidence            999999999999887765

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.76  E-value=9.6e-09  Score=84.39  Aligned_cols=71  Identities=20%  Similarity=0.345  Sum_probs=62.3

Q ss_pred             ceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEcc-CCCEEEEEEccc
Q 041215           20 KNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNT-DGSIFAYSVCYD   97 (136)
Q Consensus        20 ~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~s~~~dd   97 (136)
                      ++..|.+|.+     .|..++|+.+ .+|.+++-|.+|++|++....+++.| .|.+-|+||+|+| |.++|++|+-|.
T Consensus       361 P~~ef~GHt~-----DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F-~HndfVTcVaFnPvDDryFiSGSLD~  432 (712)
T KOG0283|consen  361 PFCEFKGHTA-----DILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVF-SHNDFVTCVAFNPVDDRYFISGSLDG  432 (712)
T ss_pred             chhhhhccch-----hheecccccC-CeeEeccccccEEeecCCCcceeeEE-ecCCeeEEEEecccCCCcEeeccccc
Confidence            4556677777     9999999965 77889999999999999999999999 8999999999999 667999887766

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=98.75  E-value=1.3e-08  Score=76.63  Aligned_cols=82  Identities=12%  Similarity=0.152  Sum_probs=71.4

Q ss_pred             eEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCC-----------------c-ceeeecccCCCceeEEEE
Q 041215           22 FTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDS-----------------K-QRLKAMSRCGQPIPCSTF   83 (136)
Q Consensus        22 ~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~-----------------~-~~~~~~~~h~~~v~~v~~   83 (136)
                      ..+..|++     ++.+.+|+|||.++++|+.|..|+++|++.                 + .++.++-.|.++|+++.|
T Consensus       106 ~ylt~HK~-----~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~F  180 (430)
T KOG0640|consen  106 KYLTSHKS-----PCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDF  180 (430)
T ss_pred             EEEeeccc-----ceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceee
Confidence            44678999     999999999999999999999999999861                 1 345677789999999999


Q ss_pred             ccCCCEEEEEEcccccccccccCCC
Q 041215           84 NTDGSIFAYSVCYDWSKGAENHNPA  108 (136)
Q Consensus        84 sp~~~~l~s~~~dd~~~~~~~~~~~  108 (136)
                      +|...+|++|+.|...+.|++.-|.
T Consensus       181 HPre~ILiS~srD~tvKlFDfsK~s  205 (430)
T KOG0640|consen  181 HPRETILISGSRDNTVKLFDFSKTS  205 (430)
T ss_pred             cchhheEEeccCCCeEEEEecccHH
Confidence            9999999999999999988876554

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=98.75  E-value=3e-08  Score=81.32  Aligned_cols=90  Identities=16%  Similarity=0.121  Sum_probs=81.8

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEee---eCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCce
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCH---RDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPI   78 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h---~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v   78 (136)
                      +..|.+|+|  ||+.++++...|++.   .+     ....+.+.|.|.+|++...|.++.++|+.+++++.++.+|...|
T Consensus       614 ~cQDrniri--f~i~sgKq~k~FKgs~~~eG-----~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~V  686 (1080)
T KOG1408|consen  614 VCQDRNIRI--FDIESGKQVKSFKGSRDHEG-----DLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAV  686 (1080)
T ss_pred             EecccceEE--EeccccceeeeecccccCCC-----ceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchhe
Confidence            456888988  999999999999864   45     67788999999999999999999999999999999999999999


Q ss_pred             eEEEEccCCCEEEEEEcccc
Q 041215           79 PCSTFNTDGSIFAYSVCYDW   98 (136)
Q Consensus        79 ~~v~~sp~~~~l~s~~~dd~   98 (136)
                      +.|-|.+|.+.|++.++|.-
T Consensus       687 TG~kF~nDCkHlISvsgDgC  706 (1080)
T KOG1408|consen  687 TGVKFLNDCKHLISVSGDGC  706 (1080)
T ss_pred             eeeeecccchhheeecCCce
Confidence            99999999999999988873

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=98.75  E-value=6.3e-08  Score=80.75  Aligned_cols=89  Identities=19%  Similarity=0.309  Sum_probs=71.0

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccC-------
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRC-------   74 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h-------   74 (136)
                      ||.|=.|.+  .+.....+...+.+|++     +|.+++|+|++.+|++.+.||.|++|+++++.+.+.+.+-       
T Consensus       114 gsdD~~vK~--~~~~D~s~~~~lrgh~a-----pVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~  186 (933)
T KOG1274|consen  114 GSDDTAVKL--LNLDDSSQEKVLRGHDA-----PVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFI  186 (933)
T ss_pred             ecCceeEEE--EeccccchheeecccCC-----ceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCcccccc
Confidence            555656665  66666778889999999     9999999999999999999999999999998777666542       


Q ss_pred             -CCceeEEEEccCCCEEEEEEccc
Q 041215           75 -GQPIPCSTFNTDGSIFAYSVCYD   97 (136)
Q Consensus        75 -~~~v~~v~~sp~~~~l~s~~~dd   97 (136)
                       ...+..++|+|++..++..+.++
T Consensus       187 ~s~i~~~~aW~Pk~g~la~~~~d~  210 (933)
T KOG1274|consen  187 LSRICTRLAWHPKGGTLAVPPVDN  210 (933)
T ss_pred             ccceeeeeeecCCCCeEEeeccCC
Confidence             35667899999966555555544

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=98.73  E-value=5.2e-08  Score=79.28  Aligned_cols=88  Identities=18%  Similarity=0.224  Sum_probs=74.9

Q ss_pred             CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC   80 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~   80 (136)
                      .||.|.+|++  |  +.++.+.+|++|..     -|..+++-+++. +++|+.||.|++|++ +++++.++.+|..-|.+
T Consensus       156 TgsaDKtIkl--W--k~~~~l~tf~gHtD-----~VRgL~vl~~~~-flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYs  224 (745)
T KOG0301|consen  156 TGSADKTIKL--W--KGGTLLKTFSGHTD-----CVRGLAVLDDSH-FLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYS  224 (745)
T ss_pred             eccCcceeee--c--cCCchhhhhccchh-----heeeeEEecCCC-eEeecCCceEEEEec-cCceeeeeeccceEEEE
Confidence            3778888877  6  33678888999988     999999998755 558889999999999 78899999999999999


Q ss_pred             EEEccCCCEEEEEEccccc
Q 041215           81 STFNTDGSIFAYSVCYDWS   99 (136)
Q Consensus        81 v~~sp~~~~l~s~~~dd~~   99 (136)
                      +...+++..+++++.|...
T Consensus       225 is~~~~~~~Ivs~gEDrtl  243 (745)
T KOG0301|consen  225 ISMALSDGLIVSTGEDRTL  243 (745)
T ss_pred             EEecCCCCeEEEecCCceE
Confidence            9999999999988887743

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=98.71  E-value=9.7e-08  Score=79.08  Aligned_cols=92  Identities=22%  Similarity=0.357  Sum_probs=77.2

Q ss_pred             CCceeceEEEEEeeCCCCcceeEE---EeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCccee---------
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTF---KCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRL---------   68 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l---~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~---------   68 (136)
                      +|+..|+|.+  |+.+++-....|   ..|++     +|.+++.....+.+++++.+|.+.+||+..+..+         
T Consensus       465 IG~S~G~Id~--fNmQSGi~r~sf~~~~ah~~-----~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~  537 (910)
T KOG1539|consen  465 IGYSKGTIDR--FNMQSGIHRKSFGDSPAHKG-----EVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSI  537 (910)
T ss_pred             EeccCCeEEE--EEcccCeeecccccCccccC-----ceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCc
Confidence            3677888887  888988888888   57999     9999999888899999999999999987654322         


Q ss_pred             --------------------------------eecccCCCceeEEEEccCCCEEEEEEccccc
Q 041215           69 --------------------------------KAMSRCGQPIPCSTFNTDGSIFAYSVCYDWS   99 (136)
Q Consensus        69 --------------------------------~~~~~h~~~v~~v~~sp~~~~l~s~~~dd~~   99 (136)
                                                      .+|.+|.+.|+.++|||+|+++++++-|...
T Consensus       538 ~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tI  600 (910)
T KOG1539|consen  538 TGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTI  600 (910)
T ss_pred             ceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcE
Confidence                                            2333799999999999999999999988754

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=98.67  E-value=5.2e-08  Score=77.30  Aligned_cols=91  Identities=16%  Similarity=0.301  Sum_probs=66.0

Q ss_pred             CceeceEEEEEeeCCCCcceeEE-EeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCC-cceeeecccC--CCc
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTF-KCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDS-KQRLKAMSRC--GQP   77 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l-~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~-~~~~~~~~~h--~~~   77 (136)
                      |..||.|-+|.+--....+.+.. +.|...   ..|+||+|+++|++|++-+.|+.+++||+.+ .+++.+..+-  .-+
T Consensus       335 gc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g---~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~  411 (641)
T KOG0772|consen  335 GCLDGSIQIWDKGSRTVRPVMKVKDAHLPG---QDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFP  411 (641)
T ss_pred             cccCCceeeeecCCcccccceEeeeccCCC---CceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCC
Confidence            56799998855422222333332 456442   2799999999999999999999999999986 4555555543  234


Q ss_pred             eeEEEEccCCCEEEEEEc
Q 041215           78 IPCSTFNTDGSIFAYSVC   95 (136)
Q Consensus        78 v~~v~~sp~~~~l~s~~~   95 (136)
                      -+.++|||+.+++++|.+
T Consensus       412 ~tdc~FSPd~kli~TGtS  429 (641)
T KOG0772|consen  412 GTDCCFSPDDKLILTGTS  429 (641)
T ss_pred             CCccccCCCceEEEeccc
Confidence            578899999999999855

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=98.66  E-value=1.2e-07  Score=73.26  Aligned_cols=93  Identities=14%  Similarity=0.215  Sum_probs=72.6

Q ss_pred             CceeceEEEEEeeCCC--C-----cceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCC--------C--
Q 041215            2 GSIEGRVGVHHLDDSQ--Q-----SKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKD--------S--   64 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~--~-----~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~--------~--   64 (136)
                      |..|..|+||......  +     +-...|..|..     .|+++.|+|+|.+|++|+++|.|.+|-..        +  
T Consensus        32 ~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~-----aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~  106 (434)
T KOG1009|consen   32 AGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTR-----AVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEA  106 (434)
T ss_pred             ccCccceeeeeeeecCCCCCceeEEEeecccCCcc-----eeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchh
Confidence            5668889998875431  1     12345666778     99999999999999999999999999654        2  


Q ss_pred             ------cceeeecccCCCceeEEEEccCCCEEEEEEccccc
Q 041215           65 ------KQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWS   99 (136)
Q Consensus        65 ------~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd~~   99 (136)
                            ......+.+|...|..++|+|++.++++++-|+-.
T Consensus       107 ~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~  147 (434)
T KOG1009|consen  107 DLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSV  147 (434)
T ss_pred             hhCccceEEEEEecccccchhhhhccCCCceeeeeeccceE
Confidence                  12234566899999999999999999999887743

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.66  E-value=3.3e-08  Score=77.53  Aligned_cols=85  Identities=22%  Similarity=0.355  Sum_probs=70.0

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS   81 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v   81 (136)
                      |-..|+|++  |.+.+..++..+.||.+     +|.+++++++|++.+|.+.|..++|||+.+...++++.. .-+...+
T Consensus       269 GhsnGtVSl--WSP~skePLvKiLcH~g-----~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~l  340 (545)
T KOG1272|consen  269 GHSNGTVSL--WSPNSKEPLVKILCHRG-----PVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNL  340 (545)
T ss_pred             cCCCceEEe--cCCCCcchHHHHHhcCC-----CcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccc
Confidence            556788887  88898999999999999     999999999999999999999999999998765655544 3567888


Q ss_pred             EEccCCCEEEEEEc
Q 041215           82 TFNTDGSIFAYSVC   95 (136)
Q Consensus        82 ~~sp~~~~l~s~~~   95 (136)
                      +||+.|- ||.+.+
T Consensus       341 s~Sqkgl-LA~~~G  353 (545)
T KOG1272|consen  341 SLSQKGL-LALSYG  353 (545)
T ss_pred             ccccccc-eeeecC
Confidence            8988884 443433

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=98.65  E-value=1.3e-07  Score=74.96  Aligned_cols=100  Identities=17%  Similarity=0.256  Sum_probs=80.2

Q ss_pred             CCceeceEEEEEeeCCCCcceeEE-EeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCcceeeecccCCCce
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTF-KCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPI   78 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l-~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v   78 (136)
                      ++|.+|.|.+  ||.....+++.+ ..|..     +...|+|+|.. .+|++.+.|..|.+||.........+ .-..|+
T Consensus       182 ~asd~G~Vtl--wDv~g~sp~~~~~~~HsA-----P~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l-~y~~Pl  253 (673)
T KOG4378|consen  182 IASDKGAVTL--WDVQGMSPIFHASEAHSA-----PCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRL-TYSHPL  253 (673)
T ss_pred             eeccCCeEEE--EeccCCCcccchhhhccC-----CcCcceecCCccceEEEecccceEEEeeccccccccee-eecCCc
Confidence            3678999988  888877777665 46888     99999999988 68999999999999999876655555 334789


Q ss_pred             eEEEEccCCCEEEEEEcccccccccccCCC
Q 041215           79 PCSTFNTDGSIFAYSVCYDWSKGAENHNPA  108 (136)
Q Consensus        79 ~~v~~sp~~~~l~s~~~dd~~~~~~~~~~~  108 (136)
                      ..|+|+++|.+|+.|.+-+=...+++....
T Consensus       254 stvaf~~~G~~L~aG~s~G~~i~YD~R~~k  283 (673)
T KOG4378|consen  254 STVAFSECGTYLCAGNSKGELIAYDMRSTK  283 (673)
T ss_pred             ceeeecCCceEEEeecCCceEEEEecccCC
Confidence            999999999999998776655556666555

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=98.65  E-value=4e-08  Score=80.19  Aligned_cols=82  Identities=20%  Similarity=0.302  Sum_probs=65.8

Q ss_pred             EEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCE
Q 041215           10 VHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSI   89 (136)
Q Consensus        10 i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~   89 (136)
                      +++||+..+....++++|+.     .|.|++|+.+|..+++|+.|..|.+|+..-.. +-.+ .|.+.|.||.|+|-...
T Consensus        35 lliyD~ndG~llqtLKgHKD-----tVycVAys~dGkrFASG~aDK~VI~W~~klEG-~LkY-SH~D~IQCMsFNP~~h~  107 (1081)
T KOG1538|consen   35 LLVYDTSDGTLLQPLKGHKD-----TVYCVAYAKDGKRFASGSADKSVIIWTSKLEG-ILKY-SHNDAIQCMSFNPITHQ  107 (1081)
T ss_pred             EEEEeCCCcccccccccccc-----eEEEEEEccCCceeccCCCceeEEEecccccc-eeee-ccCCeeeEeecCchHHH
Confidence            34599999999999999999     99999999999999999999999999865321 1122 56777788888877777


Q ss_pred             EEEEEcccc
Q 041215           90 FAYSVCYDW   98 (136)
Q Consensus        90 l~s~~~dd~   98 (136)
                      +++++-.||
T Consensus       108 LasCsLsdF  116 (1081)
T KOG1538|consen  108 LASCSLSDF  116 (1081)
T ss_pred             hhhcchhhc
Confidence            777666554

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=98.64  E-value=2.2e-07  Score=76.39  Aligned_cols=83  Identities=12%  Similarity=0.154  Sum_probs=72.6

Q ss_pred             ceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcC--CCcEEEEeCCCcceeeecccCCCceeEEEE
Q 041215            6 GRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGS--DGAFNFWDKDSKQRLKAMSRCGQPIPCSTF   83 (136)
Q Consensus         6 G~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~--dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~   83 (136)
                      |.+. .+|+++..++.+.+..++.     ++++++|+++|+++++|-.  ...+++|++.....+.+|..|.-.|.|++|
T Consensus        57 GCvV-Vlfn~~~~tQ~hlvnssRk-----~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaF  130 (1080)
T KOG1408|consen   57 GCVV-VLFNVDSCTQSHLVNSSRK-----PLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAF  130 (1080)
T ss_pred             CcEE-EEEcccccchhheecccCc-----ceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeee
Confidence            4443 3689988888899999999     9999999999999999874  467999999988889999999999999999


Q ss_pred             ccCCCEEEEEE
Q 041215           84 NTDGSIFAYSV   94 (136)
Q Consensus        84 sp~~~~l~s~~   94 (136)
                      +|.+.++++.+
T Consensus       131 sp~~kyvvSVG  141 (1080)
T KOG1408|consen  131 SPGNKYVVSVG  141 (1080)
T ss_pred             cCCCcEEEeec
Confidence            99999998543

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=98.62  E-value=4.6e-08  Score=77.54  Aligned_cols=93  Identities=14%  Similarity=0.226  Sum_probs=74.3

Q ss_pred             CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC   80 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~   80 (136)
                      ||..-.++.||.+-..+......+.+..-     .+-+++.+||.+..+++..||.|.|||+.+...+.+|.+|.+-+.|
T Consensus       482 vGGeastlsiWDLAapTprikaeltssap-----aCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGasc  556 (705)
T KOG0639|consen  482 VGGEASTLSIWDLAAPTPRIKAELTSSAP-----ACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASC  556 (705)
T ss_pred             eccccceeeeeeccCCCcchhhhcCCcch-----hhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCcee
Confidence            34555677774443344444555554444     6677899999999999999999999999999999999999999999


Q ss_pred             EEEccCCCEEEEEEcccc
Q 041215           81 STFNTDGSIFAYSVCYDW   98 (136)
Q Consensus        81 v~~sp~~~~l~s~~~dd~   98 (136)
                      |.++++|.-|=||+-|..
T Consensus       557 Idis~dGtklWTGGlDnt  574 (705)
T KOG0639|consen  557 IDISKDGTKLWTGGLDNT  574 (705)
T ss_pred             EEecCCCceeecCCCccc
Confidence            999999999998877764

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.61  E-value=2.7e-07  Score=74.44  Aligned_cols=73  Identities=16%  Similarity=0.324  Sum_probs=61.6

Q ss_pred             cceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCC--EEEEEEcc
Q 041215           19 SKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGS--IFAYSVCY   96 (136)
Q Consensus        19 ~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~--~l~s~~~d   96 (136)
                      .+...+.+|.+     .|.+|+.+|.|.+|++|+.||+|++|.+.+|.++.++. ..+.|.||+|+|.+.  +||.+-+.
T Consensus       391 ~~~lvyrGHtg-----~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~  464 (733)
T KOG0650|consen  391 RCALVYRGHTG-----LVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGE  464 (733)
T ss_pred             eeeeeEeccCC-----eEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecC
Confidence            34567789999     99999999999999999999999999999999998773 446899999999875  56655444


Q ss_pred             c
Q 041215           97 D   97 (136)
Q Consensus        97 d   97 (136)
                      .
T Consensus       465 ~  465 (733)
T KOG0650|consen  465 C  465 (733)
T ss_pred             c
Confidence            4

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=98.60  E-value=1.7e-07  Score=74.72  Aligned_cols=97  Identities=12%  Similarity=0.136  Sum_probs=79.3

Q ss_pred             CceeceEEEEEeeC------CCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCC------c----
Q 041215            2 GSIEGRVGVHHLDD------SQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDS------K----   65 (136)
Q Consensus         2 gs~dG~v~i~~~d~------~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~------~----   65 (136)
                      |+.||++.+|.+..      ...+++++|.+|.+     +|.|+++.+.+..+++|+-||.|++|++..      .    
T Consensus       312 ~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~g-----PVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~  386 (577)
T KOG0642|consen  312 ASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEG-----PVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPS  386 (577)
T ss_pred             eccccchhhhhhcccCCccccceeeeEEEecccC-----ceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcc
Confidence            67899999988832      23467899999999     999999999999999999999999996531      1    


Q ss_pred             ceeeecccCCCceeEEEEccCCCEEEEEEccccccccc
Q 041215           66 QRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAE  103 (136)
Q Consensus        66 ~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd~~~~~~  103 (136)
                      .....+.+|.+.|..+++|+....|++++.|+...+..
T Consensus       387 vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~  424 (577)
T KOG0642|consen  387 VLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWE  424 (577)
T ss_pred             hhccceeccccceeeeeecccccceeeecCCceEEeec
Confidence            22346678999999999999998899998888665443

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.59  E-value=6.2e-07  Score=69.91  Aligned_cols=101  Identities=16%  Similarity=0.179  Sum_probs=79.8

Q ss_pred             CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCcceeeecccCCCcee
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIP   79 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~   79 (136)
                      .||.|.+|.+  ||..++++..++..|..     .|.++.|||.. ..|++|+.|++|.+.|.+.-......-...+.|-
T Consensus       261 SgsaD~TV~l--WD~~~g~p~~s~~~~~k-----~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VE  333 (463)
T KOG0270|consen  261 SGSADKTVKL--WDVDTGKPKSSITHHGK-----KVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVE  333 (463)
T ss_pred             ecCCCceEEE--EEcCCCCcceehhhcCC-----ceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceE
Confidence            4788999987  88899999999998888     99999999988 7999999999999999985222222223457899


Q ss_pred             EEEEccCCC-EEEEEEcccccccccccCCC
Q 041215           80 CSTFNTDGS-IFAYSVCYDWSKGAENHNPA  108 (136)
Q Consensus        80 ~v~~sp~~~-~l~s~~~dd~~~~~~~~~~~  108 (136)
                      .+.|+|... .++++..|+....++.+.|.
T Consensus       334 kv~w~~~se~~f~~~tddG~v~~~D~R~~~  363 (463)
T KOG0270|consen  334 KVAWDPHSENSFFVSTDDGTVYYFDIRNPG  363 (463)
T ss_pred             EEEecCCCceeEEEecCCceEEeeecCCCC
Confidence            999999765 45555666677777777775

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=98.57  E-value=1.3e-06  Score=62.38  Aligned_cols=61  Identities=13%  Similarity=0.314  Sum_probs=47.5

Q ss_pred             ceeEEEEeCCCCEEEE--EcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEcccc
Q 041215           35 SVNSLNFHPIHHTFAT--AGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDW   98 (136)
Q Consensus        35 ~v~~l~~~p~~~~l~s--~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd~   98 (136)
                      +|.+++|+|+|..|+.  +..+..|.+||++ +..+..+.  ...++.|.|+|+|+++++|+-.+.
T Consensus        61 ~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~  123 (194)
T PF08662_consen   61 PIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNL  123 (194)
T ss_pred             ceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCC
Confidence            7999999999976543  3456789999997 55555553  467899999999999999875543

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=98.55  E-value=8.8e-08  Score=73.23  Aligned_cols=91  Identities=14%  Similarity=0.123  Sum_probs=73.0

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCc-ceeeecccCCCceeE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSK-QRLKAMSRCGQPIPC   80 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~-~~~~~~~~h~~~v~~   80 (136)
                      |..|+.|.+  ||.+...++.... ..-     .-+.|+|+|.+-.+++++.|..++.||+... ..+..+.+|.+.|.+
T Consensus       206 ~~sDrsIvL--yD~R~~~Pl~KVi-~~m-----RTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~d  277 (433)
T KOG0268|consen  206 CASDRSIVL--YDLRQASPLKKVI-LTM-----RTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMD  277 (433)
T ss_pred             eccCCceEE--EecccCCccceee-eec-----cccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEE
Confidence            445777766  9999888877654 233     5579999998888999999999999998763 457788899999999


Q ss_pred             EEEccCCCEEEEEEcccccc
Q 041215           81 STFNTDGSIFAYSVCYDWSK  100 (136)
Q Consensus        81 v~~sp~~~~l~s~~~dd~~~  100 (136)
                      |.|||.|+-+++|+-|--..
T Consensus       278 VdfsptG~EfvsgsyDksIR  297 (433)
T KOG0268|consen  278 VDFSPTGQEFVSGSYDKSIR  297 (433)
T ss_pred             eccCCCcchhccccccceEE
Confidence            99999999999876554433

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=98.55  E-value=1.7e-06  Score=64.95  Aligned_cols=100  Identities=10%  Similarity=0.085  Sum_probs=83.0

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcC--CCcEEEEeCCCcceeeecccCCCcee
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGS--DGAFNFWDKDSKQRLKAMSRCGQPIP   79 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~--dg~v~vwd~~~~~~~~~~~~h~~~v~   79 (136)
                      +|.|.++.+  ||..++++..++.+++-     .|..++|......+..++.  |..|++.++.+.+.+.-|.+|...|+
T Consensus        32 ss~dDsl~L--Yd~~~g~~~~ti~skky-----G~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~  104 (311)
T KOG1446|consen   32 SSEDDSLRL--YDSLSGKQVKTINSKKY-----GVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVN  104 (311)
T ss_pred             ecCCCeEEE--EEcCCCceeeEeecccc-----cccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEE
Confidence            355667777  99999999999998887     8889999655565556665  78899999999999999999999999


Q ss_pred             EEEEccCCCEEEEEEcccccccccccCCC
Q 041215           80 CSTFNTDGSIFAYSVCYDWSKGAENHNPA  108 (136)
Q Consensus        80 ~v~~sp~~~~l~s~~~dd~~~~~~~~~~~  108 (136)
                      +++.+|-+..+++++-|...+..+.+.++
T Consensus       105 sL~~sP~~d~FlS~S~D~tvrLWDlR~~~  133 (311)
T KOG1446|consen  105 SLSVSPKDDTFLSSSLDKTVRLWDLRVKK  133 (311)
T ss_pred             EEEecCCCCeEEecccCCeEEeeEecCCC
Confidence            99999999999999888766655555444

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=98.54  E-value=1.1e-06  Score=65.81  Aligned_cols=90  Identities=16%  Similarity=0.197  Sum_probs=67.7

Q ss_pred             CCceeceEEEEEeeCCCC---cceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCcc----------
Q 041215            1 VGSIEGRVGVHHLDDSQQ---SKNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQ----------   66 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~---~~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~----------   66 (136)
                      +.|.|-+..|  ||.+++   .....|-.|+.     .|..++|...+ ..+++++.||.|++||++..+          
T Consensus       168 tSSiDTTCTi--Wdie~~~~~~vkTQLIAHDK-----EV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~  240 (364)
T KOG0290|consen  168 TSSIDTTCTI--WDIETGVSGTVKTQLIAHDK-----EVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPS  240 (364)
T ss_pred             eecccCeEEE--EEEeeccccceeeEEEecCc-----ceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCC
Confidence            3578888888  555544   44777889999     99999999877 799999999999999975321          


Q ss_pred             --------------------------------------eeeecccCCCceeEEEEccCCC-EEEEEEccc
Q 041215           67 --------------------------------------RLKAMSRCGQPIPCSTFNTDGS-IFAYSVCYD   97 (136)
Q Consensus        67 --------------------------------------~~~~~~~h~~~v~~v~~sp~~~-~l~s~~~dd   97 (136)
                                                            .+.++.+|.+.|+.|+|.|... .+++|+.|-
T Consensus       241 ~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~  310 (364)
T KOG0290|consen  241 PSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDC  310 (364)
T ss_pred             CCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcc
Confidence                                                  1123337999999999999765 666654444

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=98.53  E-value=1.6e-06  Score=63.68  Aligned_cols=86  Identities=9%  Similarity=0.110  Sum_probs=64.9

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEE-EEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTF-ATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC   80 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l-~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~   80 (136)
                      ++.||.+.+  ||..+++....+..+ .     .+.+++|+|++..+ ++++.++.|.+||..+++....+..+. .+..
T Consensus         7 ~~~d~~v~~--~d~~t~~~~~~~~~~-~-----~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~   77 (300)
T TIGR03866         7 NEKDNTISV--IDTATLEVTRTFPVG-Q-----RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP-DPEL   77 (300)
T ss_pred             ecCCCEEEE--EECCCCceEEEEECC-C-----CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC-CccE
Confidence            456887877  777778877777654 3     45679999999765 677788999999999988777665543 3578


Q ss_pred             EEEccCCCEEEEEEcc
Q 041215           81 STFNTDGSIFAYSVCY   96 (136)
Q Consensus        81 v~~sp~~~~l~s~~~d   96 (136)
                      ++|+|+++.+++++.+
T Consensus        78 ~~~~~~g~~l~~~~~~   93 (300)
T TIGR03866        78 FALHPNGKILYIANED   93 (300)
T ss_pred             EEECCCCCEEEEEcCC
Confidence            8999999977655443

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.52  E-value=1.7e-06  Score=65.13  Aligned_cols=99  Identities=17%  Similarity=0.243  Sum_probs=74.2

Q ss_pred             CCceeceEEEEEeeCCC--CcceeEEEeeeCCCCccceeEEEE-eC-CCCEEEEEcCCCcEEEEeCCCc---------ce
Q 041215            1 VGSIEGRVGVHHLDDSQ--QSKNFTFKCHRDGSEIYSVNSLNF-HP-IHHTFATAGSDGAFNFWDKDSK---------QR   67 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~--~~~~~~l~~h~~~~~~~~v~~l~~-~p-~~~~l~s~~~dg~v~vwd~~~~---------~~   67 (136)
                      .||.|+++.||.++..+  -.....+++|.+     .|..+.| || .|+.+++++.|+++.||.-...         ..
T Consensus        30 tCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~-----Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~  104 (361)
T KOG2445|consen   30 TCSSDQTVKIWDSTSDSGTWSCTSSWRAHDG-----SIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVR  104 (361)
T ss_pred             eccCCCcEEEEeccCCCCceEEeeeEEecCC-----cEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEE
Confidence            37889999996654332  345677899999     9999999 44 3489999999999999976311         11


Q ss_pred             eeecccCCCceeEEEEccC--CCEEEEEEcccccccccc
Q 041215           68 LKAMSRCGQPIPCSTFNTD--GSIFAYSVCYDWSKGAEN  104 (136)
Q Consensus        68 ~~~~~~h~~~v~~v~~sp~--~~~l~s~~~dd~~~~~~~  104 (136)
                      ...+..-...|+.|.|.|.  |-.+|+++.|++.+.++.
T Consensus       105 ~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA  143 (361)
T KOG2445|consen  105 RTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEA  143 (361)
T ss_pred             EEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEec
Confidence            2345566789999999985  668898888887665544

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=98.52  E-value=1.8e-06  Score=67.64  Aligned_cols=91  Identities=20%  Similarity=0.214  Sum_probs=76.3

Q ss_pred             CCceeceEEEEEeeC-------CCCcceeEEEeeeCCCCccceeEEEEeCCC--CEEEEEcCCCcEEEEeCCCcceeeec
Q 041215            1 VGSIEGRVGVHHLDD-------SQQSKNFTFKCHRDGSEIYSVNSLNFHPIH--HTFATAGSDGAFNFWDKDSKQRLKAM   71 (136)
Q Consensus         1 vgs~dG~v~i~~~d~-------~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~--~~l~s~~~dg~v~vwd~~~~~~~~~~   71 (136)
                      .||.||.|.+|.+-.       .+.++++.|..|.-     +|+.+-..+.|  ..|++++.|.++++||+..+..+-++
T Consensus       140 TgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Htl-----sITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti  214 (476)
T KOG0646|consen  140 TGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTL-----SITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTI  214 (476)
T ss_pred             ecCCCccEEEEEEEeecccccCCCccceeeeccCcc-----eeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEE
Confidence            489999999987521       25688999999999     99998887765  68999999999999999999887666


Q ss_pred             ccCCCceeEEEEccCCCEEEEEEccc
Q 041215           72 SRCGQPIPCSTFNTDGSIFAYSVCYD   97 (136)
Q Consensus        72 ~~h~~~v~~v~~sp~~~~l~s~~~dd   97 (136)
                      . ....+++|+.+|.++.+..|..++
T Consensus       215 ~-fp~si~av~lDpae~~~yiGt~~G  239 (476)
T KOG0646|consen  215 T-FPSSIKAVALDPAERVVYIGTEEG  239 (476)
T ss_pred             e-cCCcceeEEEcccccEEEecCCcc
Confidence            3 347899999999999888787766

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=98.48  E-value=2.7e-07  Score=75.19  Aligned_cols=87  Identities=15%  Similarity=0.182  Sum_probs=65.1

Q ss_pred             CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC   80 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~   80 (136)
                      +|++|++|.+  |......++++|++|+.     .|.+++...++. +++||.|.++++|..  +++...+.+|...|.+
T Consensus        76 ~g~~D~~i~v--~~~~~~~P~~~LkgH~s-----nVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWA  145 (745)
T KOG0301|consen   76 VGGMDTTIIV--FKLSQAEPLYTLKGHKS-----NVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWA  145 (745)
T ss_pred             eecccceEEE--EecCCCCchhhhhcccc-----ceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheee
Confidence            4788999987  77778889999999999     888888776666 778888888888865  3445556777777777


Q ss_pred             EEEccCCCEEEEEEcccc
Q 041215           81 STFNTDGSIFAYSVCYDW   98 (136)
Q Consensus        81 v~~sp~~~~l~s~~~dd~   98 (136)
                      +.+-|++ .++||+.|-.
T Consensus       146 v~~l~e~-~~vTgsaDKt  162 (745)
T KOG0301|consen  146 VASLPEN-TYVTGSADKT  162 (745)
T ss_pred             eeecCCC-cEEeccCcce
Confidence            7776666 5566666543

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.47  E-value=1.9e-06  Score=66.00  Aligned_cols=87  Identities=16%  Similarity=0.180  Sum_probs=67.2

Q ss_pred             EEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcC--CCcEEEEeCCCcceeeecccCCCceeEEEEccCC
Q 041215           10 VHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGS--DGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDG   87 (136)
Q Consensus        10 i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~--dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~   87 (136)
                      |++||.++-+.++++..-..  ....+.++++++.+.+|+--+.  .|.|.+||+.+...+..+..|.+++-|++|+++|
T Consensus       108 IyIydI~~MklLhTI~t~~~--n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G  185 (391)
T KOG2110|consen  108 IYIYDIKDMKLLHTIETTPP--NPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDG  185 (391)
T ss_pred             EEEEecccceeehhhhccCC--CccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCC
Confidence            45688888888888754311  1114667777776666665543  4889999999998899999999999999999999


Q ss_pred             CEEEEEEcccc
Q 041215           88 SIFAYSVCYDW   98 (136)
Q Consensus        88 ~~l~s~~~dd~   98 (136)
                      .++|||+.-+.
T Consensus       186 ~llATASeKGT  196 (391)
T KOG2110|consen  186 TLLATASEKGT  196 (391)
T ss_pred             CEEEEeccCce
Confidence            99999977553

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=98.47  E-value=2.5e-07  Score=71.43  Aligned_cols=91  Identities=15%  Similarity=0.227  Sum_probs=76.5

Q ss_pred             CceeceEEEEEee------CCC--------CcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcce
Q 041215            2 GSIEGRVGVHHLD------DSQ--------QSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQR   67 (136)
Q Consensus         2 gs~dG~v~i~~~d------~~~--------~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~   67 (136)
                      |+.+|.+-+|.-.      .++        ......+.+|+.     .|-.++|+|++.++++++-|..+++||+..|+.
T Consensus        83 g~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~-----diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l  157 (434)
T KOG1009|consen   83 GGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRD-----DIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQL  157 (434)
T ss_pred             cCCCceEEEEEecCcCCccccchhhhCccceEEEEEeccccc-----chhhhhccCCCceeeeeeccceEEEEEecccee
Confidence            6778888886654      112        223455667777     999999999999999999999999999999999


Q ss_pred             eeecccCCCceeEEEEccCCCEEEEEEccc
Q 041215           68 LKAMSRCGQPIPCSTFNTDGSIFAYSVCYD   97 (136)
Q Consensus        68 ~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd   97 (136)
                      +..+.+|..-|+-++|.|..+++++-+.|-
T Consensus       158 ~~~~~dh~~yvqgvawDpl~qyv~s~s~dr  187 (434)
T KOG1009|consen  158 LAILDDHEHYVQGVAWDPLNQYVASKSSDR  187 (434)
T ss_pred             EeeccccccccceeecchhhhhhhhhccCc
Confidence            999999999999999999999999877666

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=98.46  E-value=1.2e-06  Score=65.78  Aligned_cols=91  Identities=15%  Similarity=0.150  Sum_probs=72.8

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCC---CEEEEEcCCCcEEEEeCCCcceeeecccCCCce
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIH---HTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPI   78 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~---~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v   78 (136)
                      +|-|.++.+  ||..+.+....|+ ..+     .|-.-+++|..   .++++|..+..|++.|+.+|...+.+++|.+.|
T Consensus       120 sSFDhtlKV--WDtnTlQ~a~~F~-me~-----~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~v  191 (397)
T KOG4283|consen  120 SSFDHTLKV--WDTNTLQEAVDFK-MEG-----KVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGV  191 (397)
T ss_pred             ccccceEEE--eecccceeeEEee-cCc-----eeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCce
Confidence            567888877  8888888888887 455     66666777766   367777777889999999999999999999999


Q ss_pred             eEEEEccCCCE-EEEEEcccccc
Q 041215           79 PCSTFNTDGSI-FAYSVCYDWSK  100 (136)
Q Consensus        79 ~~v~~sp~~~~-l~s~~~dd~~~  100 (136)
                      .+|.|+|...+ |++|+.|.-.+
T Consensus       192 laV~Wsp~~e~vLatgsaDg~ir  214 (397)
T KOG4283|consen  192 LAVEWSPSSEWVLATGSADGAIR  214 (397)
T ss_pred             EEEEeccCceeEEEecCCCceEE
Confidence            99999998875 56666666443

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=98.46  E-value=2.7e-07  Score=72.20  Aligned_cols=63  Identities=22%  Similarity=0.296  Sum_probs=60.7

Q ss_pred             ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEccc
Q 041215           35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYD   97 (136)
Q Consensus        35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd   97 (136)
                      +|.++.-+|.|.+|+.+.-.+.|++|.+.+|..+..+.+|-..|+|+.|+-|+.+++||+.|.
T Consensus        83 ~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg  145 (476)
T KOG0646|consen   83 PVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDG  145 (476)
T ss_pred             ceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCc
Confidence            799999999999999999999999999999999999999999999999999999999998887

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=98.45  E-value=9e-07  Score=66.32  Aligned_cols=84  Identities=20%  Similarity=0.323  Sum_probs=66.6

Q ss_pred             CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC   80 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~   80 (136)
                      |+|+||.+++  ||.........++ |..     ++.+++|.++ ..+++|+.||.|+.+|+.++.. .++-.|..+|+|
T Consensus        30 vssWDgslrl--Ydv~~~~l~~~~~-~~~-----plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~-~~igth~~~i~c   99 (323)
T KOG1036|consen   30 VSSWDGSLRL--YDVPANSLKLKFK-HGA-----PLLDCAFADE-STIVTGGLDGQVRRYDLNTGNE-DQIGTHDEGIRC   99 (323)
T ss_pred             EEeccCcEEE--Eeccchhhhhhee-cCC-----ceeeeeccCC-ceEEEeccCceEEEEEecCCcc-eeeccCCCceEE
Confidence            5789999999  6655554444444 777     9999999974 6688999999999999998764 456689999999


Q ss_pred             EEEccCCCEEEEEE
Q 041215           81 STFNTDGSIFAYSV   94 (136)
Q Consensus        81 v~~sp~~~~l~s~~   94 (136)
                      |.+++....+++|+
T Consensus       100 i~~~~~~~~vIsgs  113 (323)
T KOG1036|consen  100 IEYSYEVGCVISGS  113 (323)
T ss_pred             EEeeccCCeEEEcc
Confidence            99998776677553

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.45  E-value=1.1e-06  Score=71.40  Aligned_cols=95  Identities=13%  Similarity=0.230  Sum_probs=74.5

Q ss_pred             CceeceEEEEEeeCCCCcc--eeEE---EeeeC-CCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCC
Q 041215            2 GSIEGRVGVHHLDDSQQSK--NFTF---KCHRD-GSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCG   75 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~--~~~l---~~h~~-~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~   75 (136)
                      |+-|+.|-+  ||..++..  ..++   ..... ..+..+|-+++.++.|..+++|+..+.+++||..+++.+-.+.+|.
T Consensus       136 gGLD~~Ifl--WDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHT  213 (735)
T KOG0308|consen  136 GGLDRKIFL--WDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHT  213 (735)
T ss_pred             cCCCccEEE--EEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccc
Confidence            677888887  55554422  2221   11111 1334489999999999999999999999999999998888889999


Q ss_pred             CceeEEEEccCCCEEEEEEcccc
Q 041215           76 QPIPCSTFNTDGSIFAYSVCYDW   98 (136)
Q Consensus        76 ~~v~~v~~sp~~~~l~s~~~dd~   98 (136)
                      +.|.++..+.+|+.++++++|..
T Consensus       214 dNVr~ll~~dDGt~~ls~sSDgt  236 (735)
T KOG0308|consen  214 DNVRVLLVNDDGTRLLSASSDGT  236 (735)
T ss_pred             cceEEEEEcCCCCeEeecCCCce
Confidence            99999999999999999999883

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=98.45  E-value=1.6e-06  Score=68.03  Aligned_cols=82  Identities=17%  Similarity=0.232  Sum_probs=66.2

Q ss_pred             EEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCC-ceeEEEEccCCCE
Q 041215           11 HHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQ-PIPCSTFNTDGSI   89 (136)
Q Consensus        11 ~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~-~v~~v~~sp~~~~   89 (136)
                      +++-+.++..+.+++ ..+     .|..++|+.++..|..++.+|.|.+||+....+++.+...++ .-+++|.++++.+
T Consensus       328 ~lLhakT~eli~s~K-ieG-----~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~y  401 (514)
T KOG2055|consen  328 HLLHAKTKELITSFK-IEG-----VVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSY  401 (514)
T ss_pred             Eeehhhhhhhhheee-ecc-----EEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCce
Confidence            336667788888876 456     899999999999888888999999999999988888865532 2267888999999


Q ss_pred             EEEEEcccc
Q 041215           90 FAYSVCYDW   98 (136)
Q Consensus        90 l~s~~~dd~   98 (136)
                      ||+|+..+.
T Consensus       402 lA~GS~~Gi  410 (514)
T KOG2055|consen  402 LATGSDSGI  410 (514)
T ss_pred             EEeccCcce
Confidence            999977543

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=98.43  E-value=2.5e-07  Score=70.84  Aligned_cols=90  Identities=13%  Similarity=0.174  Sum_probs=68.4

Q ss_pred             CceeceEEEEEeeCCC-CcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeeccc-CCCcee
Q 041215            2 GSIEGRVGVHHLDDSQ-QSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSR-CGQPIP   79 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~-~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~-h~~~v~   79 (136)
                      |+.|-++  +.||.+. ..++..+++|.+     +|..++|+|.|..+++||.|.+|+||.+..+..--.+.. --..|.
T Consensus       247 a~ED~nl--Y~~DmR~l~~p~~v~~dhvs-----AV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~  319 (433)
T KOG0268|consen  247 ANEDHNL--YTYDMRNLSRPLNVHKDHVS-----AVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVF  319 (433)
T ss_pred             ccccccc--eehhhhhhcccchhhcccce-----eEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheee
Confidence            4444444  5688864 567788889999     999999999999999999999999999876543211111 136789


Q ss_pred             EEEEccCCCEEEEEEccccc
Q 041215           80 CSTFNTDGSIFAYSVCYDWS   99 (136)
Q Consensus        80 ~v~~sp~~~~l~s~~~dd~~   99 (136)
                      ||.||.|.+++++|+ ||..
T Consensus       320 ~Vk~S~Dskyi~SGS-dd~n  338 (433)
T KOG0268|consen  320 CVKYSMDSKYIISGS-DDGN  338 (433)
T ss_pred             EEEEeccccEEEecC-CCcc
Confidence            999999999999764 4443

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=98.43  E-value=1.2e-06  Score=68.63  Aligned_cols=66  Identities=17%  Similarity=0.244  Sum_probs=57.6

Q ss_pred             CccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEccc
Q 041215           32 EIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYD   97 (136)
Q Consensus        32 ~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd   97 (136)
                      |+..+.+++.++++.+|++++.|..|.||+.++++.++.+.+|.+.|.+++|-.....+.+++.|-
T Consensus       201 h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Dr  266 (479)
T KOG0299|consen  201 HVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADR  266 (479)
T ss_pred             ccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCC
Confidence            444899999999999999999999999999999999999999999999999977666666555543

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=98.42  E-value=4.9e-07  Score=68.41  Aligned_cols=40  Identities=28%  Similarity=0.544  Sum_probs=36.4

Q ss_pred             cceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCC
Q 041215           19 SKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKD   63 (136)
Q Consensus        19 ~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~   63 (136)
                      ...+.|++|++     .|..++|++++...++++.||..++||.+
T Consensus       269 ~rvf~LkGH~s-----aV~~~aFsn~S~r~vtvSkDG~wriwdtd  308 (420)
T KOG2096|consen  269 KRVFSLKGHQS-----AVLAAAFSNSSTRAVTVSKDGKWRIWDTD  308 (420)
T ss_pred             hhhheeccchh-----heeeeeeCCCcceeEEEecCCcEEEeecc
Confidence            34678899999     99999999999999999999999999864

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=98.40  E-value=2.7e-06  Score=71.28  Aligned_cols=91  Identities=15%  Similarity=0.211  Sum_probs=75.8

Q ss_pred             CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC   80 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~   80 (136)
                      +||.+++|..+-+  ..+..-..+.-..-     ++.+++++-+|.+++.|++|-.|++-++.+......+.+|.++|.+
T Consensus        71 ~~s~~~tv~~y~f--ps~~~~~iL~Rftl-----p~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~  143 (933)
T KOG1274|consen   71 TGSEQNTVLRYKF--PSGEEDTILARFTL-----PIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQ  143 (933)
T ss_pred             EeeccceEEEeeC--CCCCccceeeeeec-----cceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceee
Confidence            4678888888555  44444434444455     8999999999999999999999999999998888999999999999


Q ss_pred             EEEccCCCEEEEEEcccc
Q 041215           81 STFNTDGSIFAYSVCYDW   98 (136)
Q Consensus        81 v~~sp~~~~l~s~~~dd~   98 (136)
                      +.|+|.+.+||+++.|+-
T Consensus       144 l~~~p~~~fLAvss~dG~  161 (933)
T KOG1274|consen  144 LSYDPKGNFLAVSSCDGK  161 (933)
T ss_pred             eeEcCCCCEEEEEecCce
Confidence            999999999999888773

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=98.39  E-value=9.8e-07  Score=72.08  Aligned_cols=84  Identities=12%  Similarity=0.160  Sum_probs=70.0

Q ss_pred             EEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcce----eeecccCCCceeEEEEcc
Q 041215           10 VHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQR----LKAMSRCGQPIPCSTFNT   85 (136)
Q Consensus        10 i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~----~~~~~~h~~~v~~v~~sp   85 (136)
                      |++|+..+-.+...+..|.-     .|+.+.|+|++++|++++.|.++.+|.......    ......|..-|-.+.|+|
T Consensus       554 I~lw~t~~W~~~~~L~~HsL-----TVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~p  628 (764)
T KOG1063|consen  554 IRLWNTANWLQVQELEGHSL-----TVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSP  628 (764)
T ss_pred             EEEEeccchhhhheecccce-----EEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCc
Confidence            45677777777778899999     999999999999999999999999998754321    223567888999999999


Q ss_pred             CCCEEEEEEcccc
Q 041215           86 DGSIFAYSVCYDW   98 (136)
Q Consensus        86 ~~~~l~s~~~dd~   98 (136)
                      ++.+++|++-|-.
T Consensus       629 de~~FaTaSRDK~  641 (764)
T KOG1063|consen  629 DEKYFATASRDKK  641 (764)
T ss_pred             ccceeEEecCCce
Confidence            9999999988753

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.39  E-value=2.5e-06  Score=68.38  Aligned_cols=81  Identities=20%  Similarity=0.231  Sum_probs=69.1

Q ss_pred             ceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEcc
Q 041215            6 GRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNT   85 (136)
Q Consensus         6 G~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp   85 (136)
                      +...+.+|+......+..+++...     .+..++++||+..|++++  +.|.+||+++++.+..|.+|.++|++++|..
T Consensus       122 ad~~v~~~~~~~~~~~~~~~~~~~-----~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~  194 (541)
T KOG4547|consen  122 ADLKVVYILEKEKVIIRIWKEQKP-----LVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTT  194 (541)
T ss_pred             CceeEEEEecccceeeeeeccCCC-----ccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEE
Confidence            334445577788888999998888     899999999999998887  7899999999999999999999999999987


Q ss_pred             C-----CCEEEEE
Q 041215           86 D-----GSIFAYS   93 (136)
Q Consensus        86 ~-----~~~l~s~   93 (136)
                      .     |.+++++
T Consensus       195 ~~~g~~G~~vLss  207 (541)
T KOG4547|consen  195 LIDGIIGKYVLSS  207 (541)
T ss_pred             eccccccceeeec
Confidence            7     6666643

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=98.38  E-value=7.6e-06  Score=60.75  Aligned_cols=87  Identities=28%  Similarity=0.463  Sum_probs=71.0

Q ss_pred             eeceEEEEEeeCCC-CcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcC-CCcEEEEeCCCcceeeecccCCCceeEE
Q 041215            4 IEGRVGVHHLDDSQ-QSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGS-DGAFNFWDKDSKQRLKAMSRCGQPIPCS   81 (136)
Q Consensus         4 ~dG~v~i~~~d~~~-~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~-dg~v~vwd~~~~~~~~~~~~h~~~v~~v   81 (136)
                      .|+.+.+  ||... ......+..|..     .|..++|+|++..++.++. ++.+++|+...+..+..+..|...|.++
T Consensus       132 ~d~~~~~--~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  204 (466)
T COG2319         132 LDGTVKL--WDLSTPGKLIRTLEGHSE-----SVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSL  204 (466)
T ss_pred             CCccEEE--EEecCCCeEEEEEecCcc-----cEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEE
Confidence            3666666  66665 677778888888     9999999999998888886 9999999999888888888899999999


Q ss_pred             EEccCCC-EEEEEEccc
Q 041215           82 TFNTDGS-IFAYSVCYD   97 (136)
Q Consensus        82 ~~sp~~~-~l~s~~~dd   97 (136)
                      +|+|++. ++++++.|.
T Consensus       205 ~~~~~~~~~~~~~~~d~  221 (466)
T COG2319         205 AFSPDGGLLIASGSSDG  221 (466)
T ss_pred             EEcCCcceEEEEecCCC
Confidence            9999998 444424443

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=98.37  E-value=6.4e-06  Score=60.48  Aligned_cols=85  Identities=15%  Similarity=0.139  Sum_probs=61.3

Q ss_pred             ceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEE-EcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215            3 SIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFAT-AGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS   81 (136)
Q Consensus         3 s~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s-~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v   81 (136)
                      +.++.+.+  ||..+++....+..+.      .+..++|+|+++.++. ++.++.|.+||+.+...+..+.. ...+.++
T Consensus        50 ~~~~~v~~--~d~~~~~~~~~~~~~~------~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~  120 (300)
T TIGR03866        50 SDSDTIQV--IDLATGEVIGTLPSGP------DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGM  120 (300)
T ss_pred             CCCCeEEE--EECCCCcEEEeccCCC------CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceE
Confidence            34566655  7777776666655433      3467899999986654 45688999999998777666643 3456889


Q ss_pred             EEccCCCEEEEEEcc
Q 041215           82 TFNTDGSIFAYSVCY   96 (136)
Q Consensus        82 ~~sp~~~~l~s~~~d   96 (136)
                      +|+|++.+++++..+
T Consensus       121 ~~~~dg~~l~~~~~~  135 (300)
T TIGR03866       121 AVSPDGKIVVNTSET  135 (300)
T ss_pred             EECCCCCEEEEEecC
Confidence            999999998877654

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=98.36  E-value=5e-06  Score=66.16  Aligned_cols=93  Identities=16%  Similarity=0.227  Sum_probs=67.1

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCc-ceeeecc-cCCCcee
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSK-QRLKAMS-RCGQPIP   79 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~-~~~~~~~-~h~~~v~   79 (136)
                      |+..|.--+  +|.++...+..-.+ ..     ++++++|+|+|.+|+.|+.|+.|++|.+... ....... .+.++|+
T Consensus       424 Gt~~G~w~V--~d~e~~~lv~~~~d-~~-----~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~it  495 (626)
T KOG2106|consen  424 GTATGRWFV--LDTETQDLVTIHTD-NE-----QLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPIT  495 (626)
T ss_pred             eeccceEEE--EecccceeEEEEec-CC-----ceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeE
Confidence            445555444  66666333333333 56     9999999999999999999999999998754 3333332 2348999


Q ss_pred             EEEEccCCCEEEEEEccccccccc
Q 041215           80 CSTFNTDGSIFAYSVCYDWSKGAE  103 (136)
Q Consensus        80 ~v~~sp~~~~l~s~~~dd~~~~~~  103 (136)
                      .+.||+|++++.+ -+-||..+++
T Consensus       496 hLDwS~Ds~~~~~-~S~d~eiLyW  518 (626)
T KOG2106|consen  496 HLDWSSDSQFLVS-NSGDYEILYW  518 (626)
T ss_pred             EeeecCCCceEEe-ccCceEEEEE
Confidence            9999999999986 4556766666

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=98.36  E-value=4.7e-06  Score=66.29  Aligned_cols=87  Identities=14%  Similarity=0.256  Sum_probs=68.8

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS   81 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v   81 (136)
                      ++.|+.+++|.    ..+...+.. ...     ++.|+.|||.| .++.|...|...+.|.++...+..-.. ..++++|
T Consensus       386 ~gqdk~v~lW~----~~k~~wt~~-~~d-----~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v  453 (626)
T KOG2106|consen  386 CGQDKHVRLWN----DHKLEWTKI-IED-----PAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVV  453 (626)
T ss_pred             ccCcceEEEcc----CCceeEEEE-ecC-----ceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEE
Confidence            56788888844    344555532 344     88999999999 899999999999999998655544444 8999999


Q ss_pred             EEccCCCEEEEEEcccccc
Q 041215           82 TFNTDGSIFAYSVCYDWSK  100 (136)
Q Consensus        82 ~~sp~~~~l~s~~~dd~~~  100 (136)
                      +|+|+|.+||.|+.|...-
T Consensus       454 ~ysp~G~~lAvgs~d~~iy  472 (626)
T KOG2106|consen  454 RYSPDGAFLAVGSHDNHIY  472 (626)
T ss_pred             EEcCCCCEEEEecCCCeEE
Confidence            9999999999999988653

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=98.36  E-value=1.9e-06  Score=65.34  Aligned_cols=88  Identities=10%  Similarity=0.128  Sum_probs=70.7

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCC---Cc-----ceeeeccc
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKD---SK-----QRLKAMSR   73 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~---~~-----~~~~~~~~   73 (136)
                      +|.|-.|.+  |+.+ ++.+.++.....     .-...+.+|+|+++++++...-|++|..-   +|     ..+.++.+
T Consensus       205 as~dt~i~l--w~lk-Gq~L~~idtnq~-----~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkG  276 (420)
T KOG2096|consen  205 ASLDTKICL--WDLK-GQLLQSIDTNQS-----SNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKG  276 (420)
T ss_pred             ecCCCcEEE--EecC-Cceeeeeccccc-----cccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheecc
Confidence            566777777  5556 667777666665     56678999999999999999999999842   23     23467889


Q ss_pred             CCCceeEEEEccCCCEEEEEEccc
Q 041215           74 CGQPIPCSTFNTDGSIFAYSVCYD   97 (136)
Q Consensus        74 h~~~v~~v~~sp~~~~l~s~~~dd   97 (136)
                      |.+.|+..+||++.+..++.+.|+
T Consensus       277 H~saV~~~aFsn~S~r~vtvSkDG  300 (420)
T KOG2096|consen  277 HQSAVLAAAFSNSSTRAVTVSKDG  300 (420)
T ss_pred             chhheeeeeeCCCcceeEEEecCC
Confidence            999999999999999999999887

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=98.35  E-value=6.3e-07  Score=71.73  Aligned_cols=84  Identities=19%  Similarity=0.389  Sum_probs=67.0

Q ss_pred             CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC   80 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~   80 (136)
                      ++|.||.+.|  +. +.+........|.+     ++.+-+|+|+|.-|++++.||.|++|. .+|+.-.++.....+|.|
T Consensus        80 i~s~DGkf~i--l~-k~~rVE~sv~AH~~-----A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c  150 (737)
T KOG1524|consen   80 ICSNDGRFVI--LN-KSARVERSISAHAA-----AISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRC  150 (737)
T ss_pred             EEcCCceEEE--ec-ccchhhhhhhhhhh-----hhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEE
Confidence            3578888876  42 34555566678888     999999999999999999999999996 566665666666789999


Q ss_pred             EEEccCCCEEEEE
Q 041215           81 STFNTDGSIFAYS   93 (136)
Q Consensus        81 v~~sp~~~~l~s~   93 (136)
                      ++|.|+..-++.+
T Consensus       151 ~~W~p~S~~vl~c  163 (737)
T KOG1524|consen  151 ARWAPNSNSIVFC  163 (737)
T ss_pred             EEECCCCCceEEe
Confidence            9999998766655

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=98.35  E-value=3.5e-06  Score=68.63  Aligned_cols=94  Identities=19%  Similarity=0.147  Sum_probs=73.1

Q ss_pred             CCceeceEEEEEeeCCCCcceeEEEee-eCCC--CccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCc
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTFKCH-RDGS--EIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQP   77 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l~~h-~~~~--~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~   77 (136)
                      .||.||.|++  ||..++...+..... ....  ...-|+++.|-.+ ..+++|.+.|.|.+||...+..++.+..|.+.
T Consensus       171 ~Gs~Dg~Iri--wd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~ad  247 (691)
T KOG2048|consen  171 GGSIDGVIRI--WDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDAD  247 (691)
T ss_pred             ecccCceEEE--EEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhhcc
Confidence            3899999999  888887777632211 1111  2224677777644 67889999999999999999999999999999


Q ss_pred             eeEEEEccCCCEEEEEEccc
Q 041215           78 IPCSTFNTDGSIFAYSVCYD   97 (136)
Q Consensus        78 v~~v~~sp~~~~l~s~~~dd   97 (136)
                      |.|++.++++..+.+++-|.
T Consensus       248 Vl~Lav~~~~d~vfsaGvd~  267 (691)
T KOG2048|consen  248 VLALAVADNEDRVFSAGVDP  267 (691)
T ss_pred             eeEEEEcCCCCeEEEccCCC
Confidence            99999999998888876665

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.34  E-value=9e-07  Score=67.10  Aligned_cols=74  Identities=14%  Similarity=0.185  Sum_probs=68.6

Q ss_pred             ceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEcccc
Q 041215           20 KNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDW   98 (136)
Q Consensus        20 ~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd~   98 (136)
                      ++..|.+|.+     .|.++.|...|..+++++.|.+-.+||+++++.++.+.+|...++.++-+|.++++++++.|..
T Consensus       264 Pl~~ltgH~~-----vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtT  337 (481)
T KOG0300|consen  264 PLMRLTGHRA-----VVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTT  337 (481)
T ss_pred             eeeeeecccc-----ceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCce
Confidence            5677888999     9999999999999999999999999999999999999999999999999999999999887664

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=98.33  E-value=2.4e-06  Score=64.76  Aligned_cols=54  Identities=19%  Similarity=0.319  Sum_probs=40.3

Q ss_pred             eCCCCEEEEEcCCCcEEEEeCCC-cceeeecccCCCceeEEEEccCCCEEEEEEc
Q 041215           42 HPIHHTFATAGSDGAFNFWDKDS-KQRLKAMSRCGQPIPCSTFNTDGSIFAYSVC   95 (136)
Q Consensus        42 ~p~~~~l~s~~~dg~v~vwd~~~-~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~   95 (136)
                      .|.+++|++|+.||.|++||+.+ +..+..+..+...|+.|+++|--.++|++++
T Consensus       306 d~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssG  360 (406)
T KOG2919|consen  306 DPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSG  360 (406)
T ss_pred             CCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccC
Confidence            34444466666777788888776 5556667778888999999999889998766

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.33  E-value=1.8e-06  Score=66.75  Aligned_cols=56  Identities=21%  Similarity=0.401  Sum_probs=45.9

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCc
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSK   65 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~   65 (136)
                      |..||.+++|.|  ........+..|..     .|.++.|+|||.+|++.+.| ..++|++.++
T Consensus       162 gg~dg~lRv~~~--Ps~~t~l~e~~~~~-----eV~DL~FS~dgk~lasig~d-~~~VW~~~~g  217 (398)
T KOG0771|consen  162 GGTDGTLRVWEW--PSMLTILEEIAHHA-----EVKDLDFSPDGKFLASIGAD-SARVWSVNTG  217 (398)
T ss_pred             ccccceEEEEec--CcchhhhhhHhhcC-----ccccceeCCCCcEEEEecCC-ceEEEEeccC
Confidence            567999999554  44444445566888     99999999999999999999 8999999887

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=98.32  E-value=2.6e-06  Score=69.59  Aligned_cols=98  Identities=16%  Similarity=0.223  Sum_probs=75.8

Q ss_pred             CCceeceEEEEEeeCCCCc----ceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCC
Q 041215            1 VGSIEGRVGVHHLDDSQQS----KNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQ   76 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~----~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~   76 (136)
                      .||.|-.|.||.+-....+    +...+.....     .|.++.|||...-|+..+..|.+.+||+.+++.+.++.+|.+
T Consensus        97 T~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~-----~vE~l~fHpTaDgil~s~a~g~v~i~D~stqk~~~el~~h~d  171 (1012)
T KOG1445|consen   97 TCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNV-----IVECLRFHPTADGILASGAHGSVYITDISTQKTAVELSGHTD  171 (1012)
T ss_pred             cccCCCeeEEEecCCCcccccCCcceeecCCce-----EEEEeecccCcCceEEeccCceEEEEEcccCceeecccCCch
Confidence            3788999999777521111    1223332333     789999999986666666778999999999999999999999


Q ss_pred             ceeEEEEccCCCEEEEEEccccccccc
Q 041215           77 PIPCSTFNTDGSIFAYSVCYDWSKGAE  103 (136)
Q Consensus        77 ~v~~v~~sp~~~~l~s~~~dd~~~~~~  103 (136)
                      .|.++.|+.||.++++++.|-....|+
T Consensus       172 ~vQSa~WseDG~llatscKdkqirifD  198 (1012)
T KOG1445|consen  172 KVQSADWSEDGKLLATSCKDKQIRIFD  198 (1012)
T ss_pred             hhhccccccCCceEeeecCCcceEEeC
Confidence            999999999999999998877665553

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=98.31  E-value=2.9e-07  Score=71.33  Aligned_cols=95  Identities=14%  Similarity=0.170  Sum_probs=77.2

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS   81 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v   81 (136)
                      |..|-.|.+|...........+|.+..+     +|+.+.|.+++..+.+++.|+.+++|++......+++++|.+.|+++
T Consensus       193 gg~Dr~Ik~W~v~~~k~~~~~tLaGs~g-----~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~a  267 (459)
T KOG0288|consen  193 GGSDRIIKLWNVLGEKSELISTLAGSLG-----NITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAA  267 (459)
T ss_pred             cchhhhhhhhhcccchhhhhhhhhccCC-----CcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeee
Confidence            4556777774443344446677777778     99999999999999999999999999999999999999999999999


Q ss_pred             EEccCCCEEEEEEccccccc
Q 041215           82 TFNTDGSIFAYSVCYDWSKG  101 (136)
Q Consensus        82 ~~sp~~~~l~s~~~dd~~~~  101 (136)
                      .|......+++|+.|-..+.
T Consensus       268 k~~~~~~~vVsgs~DRtiK~  287 (459)
T KOG0288|consen  268 KFKLSHSRVVSGSADRTIKL  287 (459)
T ss_pred             hhhccccceeeccccchhhh
Confidence            99988777888777654443

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=98.30  E-value=1.4e-06  Score=69.90  Aligned_cols=80  Identities=16%  Similarity=0.147  Sum_probs=67.7

Q ss_pred             eeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeec-ccCCCceeEEEEccC--CCEEEEEEccc
Q 041215           21 NFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAM-SRCGQPIPCSTFNTD--GSIFAYSVCYD   97 (136)
Q Consensus        21 ~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~-~~h~~~v~~v~~sp~--~~~l~s~~~dd   97 (136)
                      ...|.+|.+     =|+|+.|+.+|.+|++|++|-.+.|||....+.++.+ .+|.+.|.|+-|-|.  .+++++|.+|-
T Consensus        43 E~eL~GH~G-----CVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk  117 (758)
T KOG1310|consen   43 EAELTGHTG-----CVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDK  117 (758)
T ss_pred             hhhhccccc-----eecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcc
Confidence            356788999     9999999999999999999999999999887777766 579999999999984  56899998887


Q ss_pred             cccccccc
Q 041215           98 WSKGAENH  105 (136)
Q Consensus        98 ~~~~~~~~  105 (136)
                      ..+.|+-.
T Consensus       118 ~i~lfdl~  125 (758)
T KOG1310|consen  118 LIKLFDLD  125 (758)
T ss_pred             eEEEEecc
Confidence            66655443

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.29  E-value=1.3e-06  Score=67.55  Aligned_cols=61  Identities=20%  Similarity=0.276  Sum_probs=55.2

Q ss_pred             eEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEccc
Q 041215           37 NSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYD   97 (136)
Q Consensus        37 ~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd   97 (136)
                      .+++|+++|..+++++.||++++|+..+...+-....|.+.|.++.|+||+.+|++-+.+.
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d~  208 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGADS  208 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCCc
Confidence            4799999999999999999999999888777777889999999999999999999877663

>KOG4328 consensus WD40 protein [Function unknown]

Probab=98.28  E-value=2.4e-06  Score=67.00  Aligned_cols=87  Identities=14%  Similarity=0.225  Sum_probs=68.3

Q ss_pred             eeCCCCc-ceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCccee----eecccCCCceeEEEEccC
Q 041215           13 LDDSQQS-KNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQRL----KAMSRCGQPIPCSTFNTD   86 (136)
Q Consensus        13 ~d~~~~~-~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~~~----~~~~~h~~~v~~v~~sp~   86 (136)
                      ||.+++. ....+..|..     .|..++++|.. .+|++++.|++.+|||++.....    -....|...|+++.|||+
T Consensus       306 iD~R~~~s~~~~~~lh~k-----KI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs  380 (498)
T KOG4328|consen  306 IDLRTDGSEYENLRLHKK-----KITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPS  380 (498)
T ss_pred             EEeecCCccchhhhhhhc-----ccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCC
Confidence            6666543 4666777888     99999999998 68999999999999998753221    223378999999999998


Q ss_pred             CCEEEEEEcccccccccc
Q 041215           87 GSIFAYSVCYDWSKGAEN  104 (136)
Q Consensus        87 ~~~l~s~~~dd~~~~~~~  104 (136)
                      +-.|+|-+-|+....++.
T Consensus       381 ~gtl~TT~~D~~IRv~ds  398 (498)
T KOG4328|consen  381 GGTLLTTCQDNEIRVFDS  398 (498)
T ss_pred             CCceEeeccCCceEEeec
Confidence            877888888887766655

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=98.26  E-value=4.3e-06  Score=67.10  Aligned_cols=61  Identities=25%  Similarity=0.395  Sum_probs=48.0

Q ss_pred             ceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccC
Q 041215           20 KNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTD   86 (136)
Q Consensus        20 ~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~   86 (136)
                      ....++.|++     -|.+++|++.+.++++|+.|-..++||.. |..+++-..|.-+|++|+|+|+
T Consensus       178 k~i~WkAHDG-----iiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd  238 (737)
T KOG1524|consen  178 KIIRWRAHDG-----LVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE  238 (737)
T ss_pred             ceeEEeccCc-----EEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccceeeeeeccc
Confidence            3456788999     99999999999999999999999999976 3445555556666666666666

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=98.26  E-value=4.6e-06  Score=63.45  Aligned_cols=58  Identities=22%  Similarity=0.341  Sum_probs=45.8

Q ss_pred             CCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCcc---eeeecccCCCceeEEEEccCC
Q 041215           30 GSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQ---RLKAMSRCGQPIPCSTFNTDG   87 (136)
Q Consensus        30 ~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~---~~~~~~~h~~~v~~v~~sp~~   87 (136)
                      ..|.+.|++++|||.. ++|++|+.||.|.+||+..-.   .+...-.|...|.++.|.-.+
T Consensus       162 eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~  223 (376)
T KOG1188|consen  162 ESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKK  223 (376)
T ss_pred             hhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCC
Confidence            4566799999999998 799999999999999986431   222333567889999998777

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=98.24  E-value=3.1e-06  Score=63.94  Aligned_cols=102  Identities=21%  Similarity=0.223  Sum_probs=75.2

Q ss_pred             CCceeceEEEEEeeCCCCc-c-eeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCC--------------
Q 041215            1 VGSIEGRVGVHHLDDSQQS-K-NFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDS--------------   64 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~-~-~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~--------------   64 (136)
                      |||-...|.+++|+-++.+ . .++=+.+++     .|.+++|||+.-+|++|+.|+..++|...-              
T Consensus       117 VgSgar~isVcy~E~ENdWWVsKhikkPirS-----tv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgs  191 (361)
T KOG1523|consen  117 VGSGARLISVCYYEQENDWWVSKHIKKPIRS-----TVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGS  191 (361)
T ss_pred             eccCccEEEEEEEecccceehhhhhCCcccc-----ceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCcc
Confidence            5777788999999876543 2 223345677     999999999999999999999999986421              


Q ss_pred             ----cceeeecccCCCceeEEEEccCCCEEEEEEcccccccccccCC
Q 041215           65 ----KQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAENHNP  107 (136)
Q Consensus        65 ----~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd~~~~~~~~~~  107 (136)
                          |..+.++....+.++.+.|+|+|..|+..+.|......+.+-|
T Consensus       192 k~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p  238 (361)
T KOG1523|consen  192 KMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP  238 (361)
T ss_pred             CCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence                1233445455689999999999999999888775443433333

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.23  E-value=8.6e-06  Score=62.85  Aligned_cols=95  Identities=13%  Similarity=0.138  Sum_probs=78.9

Q ss_pred             eceEEEEEeeCCCC-cceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeee-cccCCCceeEEE
Q 041215            5 EGRVGVHHLDDSQQ-SKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKA-MSRCGQPIPCST   82 (136)
Q Consensus         5 dG~v~i~~~d~~~~-~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~-~~~h~~~v~~v~   82 (136)
                      -+.+++  ||.+.+ .+...|.-...     +++++.+.|+++++.++...+.+..||...+..+.. +.+..+.+++|.
T Consensus       225 ~hqvR~--YDt~~qRRPV~~fd~~E~-----~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih  297 (412)
T KOG3881|consen  225 YHQVRL--YDTRHQRRPVAQFDFLEN-----PISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIH  297 (412)
T ss_pred             ceeEEE--ecCcccCcceeEeccccC-----cceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEE
Confidence            345555  777643 45555555566     899999999999999999999999999999887765 788899999999


Q ss_pred             EccCCCEEEEEEcccccccccccC
Q 041215           83 FNTDGSIFAYSVCYDWSKGAENHN  106 (136)
Q Consensus        83 ~sp~~~~l~s~~~dd~~~~~~~~~  106 (136)
                      .+|.++++++++-|-|.+.++..+
T Consensus       298 ~hp~~~~las~GLDRyvRIhD~kt  321 (412)
T KOG3881|consen  298 CHPTHPVLASCGLDRYVRIHDIKT  321 (412)
T ss_pred             EcCCCceEEeeccceeEEEeeccc
Confidence            999999999999999988777664

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=98.22  E-value=1.1e-05  Score=62.56  Aligned_cols=83  Identities=17%  Similarity=0.179  Sum_probs=67.6

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCC-CceeE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCG-QPIPC   80 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~-~~v~~   80 (136)
                      ++.|-+|.+  |+..+++...++. |..     -|..++|+-+|.+|++.+.|..|++||..++..+.+-.+|. ..-..
T Consensus       150 ag~Dn~v~i--Wnv~tgeali~l~-hpd-----~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~R  221 (472)
T KOG0303|consen  150 AGSDNTVSI--WNVGTGEALITLD-HPD-----MVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPAR  221 (472)
T ss_pred             ccCCceEEE--EeccCCceeeecC-CCC-----eEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcce
Confidence            456777877  7788999998887 888     99999999999999999999999999999999988887774 34455


Q ss_pred             EEEccCCCEEEE
Q 041215           81 STFNTDGSIFAY   92 (136)
Q Consensus        81 v~~sp~~~~l~s   92 (136)
                      +-|-.++.++.|
T Consensus       222 aifl~~g~i~tT  233 (472)
T KOG0303|consen  222 AIFLASGKIFTT  233 (472)
T ss_pred             eEEeccCceeee
Confidence            566666664443

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=98.22  E-value=1.1e-05  Score=67.18  Aligned_cols=91  Identities=21%  Similarity=0.371  Sum_probs=73.3

Q ss_pred             CceeceEEEEEeeC--CCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCcee
Q 041215            2 GSIEGRVGVHHLDD--SQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIP   79 (136)
Q Consensus         2 gs~dG~v~i~~~d~--~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~   79 (136)
                      |..||.|.+|.--.  ........|+=|..     .|.+++|+++|.+|.+|+..+.+-+|.+.++. .+-++.-+++|.
T Consensus       223 ~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~-----~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~  296 (792)
T KOG1963|consen  223 GDSDGRILVWRDFGSSDDSETCTLLHWHHD-----EVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPIL  296 (792)
T ss_pred             eccCCcEEEEeccccccccccceEEEeccc-----ccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeE
Confidence            56789988854222  12234455666778     99999999999999999999999999999987 455667789999


Q ss_pred             EEEEccCCCEEEEEEcccc
Q 041215           80 CSTFNTDGSIFAYSVCYDW   98 (136)
Q Consensus        80 ~v~~sp~~~~l~s~~~dd~   98 (136)
                      .+.++||+.+.+....|.-
T Consensus       297 ~i~vS~ds~~~sl~~~DNq  315 (792)
T KOG1963|consen  297 HIVVSPDSDLYSLVLEDNQ  315 (792)
T ss_pred             EEEEcCCCCeEEEEecCce
Confidence            9999999999888877763

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=98.22  E-value=8.2e-06  Score=61.19  Aligned_cols=94  Identities=19%  Similarity=0.209  Sum_probs=74.7

Q ss_pred             CceeceEEEEEeeCC-CCcceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCc--------------
Q 041215            2 GSIEGRVGVHHLDDS-QQSKNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDSK--------------   65 (136)
Q Consensus         2 gs~dG~v~i~~~d~~-~~~~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~--------------   65 (136)
                      |..||-|+|  ||.+ +..+...+.+|.-     -|++++|+|.. +++.+++.|..|.+|...+-              
T Consensus       233 ~gDdgyvri--WD~R~tk~pv~el~~HsH-----WvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese  305 (370)
T KOG1007|consen  233 CGDDGYVRI--WDTRKTKFPVQELPGHSH-----WVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESE  305 (370)
T ss_pred             cCCCccEEE--EeccCCCccccccCCCce-----EEEEEEecCccceEEEecCCCceeEEEecccccccccccccccccc
Confidence            567888988  8876 4567888999999     99999999988 79999999999999964211              


Q ss_pred             ---------------ceeeecccCCCceeEEEEccCCCEEEEEEcccccccc
Q 041215           66 ---------------QRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGA  102 (136)
Q Consensus        66 ---------------~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd~~~~~  102 (136)
                                     ..+.++..|.+.|.+++||.-..++..+-+||-....
T Consensus       306 ~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviI  357 (370)
T KOG1007|consen  306 SEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVII  357 (370)
T ss_pred             CcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEe
Confidence                           1134566789999999999988888778888865433

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.22  E-value=2.4e-05  Score=61.06  Aligned_cols=84  Identities=15%  Similarity=0.144  Sum_probs=62.5

Q ss_pred             eeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEE
Q 041215            4 IEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTF   83 (136)
Q Consensus         4 ~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~   83 (136)
                      .+|.+.+  +|..+.+....+.....     .-..+.++||+++++.++.|+.|.++|+.+++.+.++... ....++++
T Consensus        14 ~~~~v~v--iD~~t~~~~~~i~~~~~-----~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~~   85 (369)
T PF02239_consen   14 GSGSVAV--IDGATNKVVARIPTGGA-----PHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIAV   85 (369)
T ss_dssp             GGTEEEE--EETTT-SEEEEEE-STT-----EEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEEE
T ss_pred             CCCEEEE--EECCCCeEEEEEcCCCC-----ceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEEE
Confidence            3567766  89998898888876544     4345778999998888899999999999999998888655 45688999


Q ss_pred             ccCCCEEEEEEc
Q 041215           84 NTDGSIFAYSVC   95 (136)
Q Consensus        84 sp~~~~l~s~~~   95 (136)
                      |++|++++++..
T Consensus        86 s~DG~~~~v~n~   97 (369)
T PF02239_consen   86 SPDGKYVYVANY   97 (369)
T ss_dssp             --TTTEEEEEEE
T ss_pred             cCCCCEEEEEec
Confidence            999999987754

...

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=98.16  E-value=2e-05  Score=64.37  Aligned_cols=91  Identities=11%  Similarity=0.130  Sum_probs=74.5

Q ss_pred             eceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceee--ecccCCCceeEEE
Q 041215            5 EGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLK--AMSRCGQPIPCST   82 (136)
Q Consensus         5 dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~--~~~~h~~~v~~v~   82 (136)
                      +....|..||.-+.++++.+.+..+     +|+.++.+|.+..++.++.||.+..++...+...+  .+....+.|.++.
T Consensus        87 g~sg~i~EwDl~~lk~~~~~d~~gg-----~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLsls  161 (691)
T KOG2048|consen   87 GLSGSITEWDLHTLKQKYNIDSNGG-----AIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLS  161 (691)
T ss_pred             cCCceEEEEecccCceeEEecCCCc-----ceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEE
Confidence            3334445599999999999999999     99999999999999999999988888887776544  3444568999999


Q ss_pred             EccCCCEEEEEEcccccc
Q 041215           83 FNTDGSIFAYSVCYDWSK  100 (136)
Q Consensus        83 ~sp~~~~l~s~~~dd~~~  100 (136)
                      |+|++..+++|+.|.-.+
T Consensus       162 w~~~~~~i~~Gs~Dg~Ir  179 (691)
T KOG2048|consen  162 WNPTGTKIAGGSIDGVIR  179 (691)
T ss_pred             ecCCccEEEecccCceEE
Confidence            999999999888877333

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=98.16  E-value=1.2e-05  Score=59.05  Aligned_cols=85  Identities=14%  Similarity=0.205  Sum_probs=63.9

Q ss_pred             ceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeeccc---------C-C
Q 041215            6 GRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSR---------C-G   75 (136)
Q Consensus         6 G~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~---------h-~   75 (136)
                      |...++.+|.++++....+++|..     =|.++..-.....+++|+.||++++||..+++.+..+..         | .
T Consensus       134 GD~~~y~~dlE~G~i~r~~rGHtD-----YvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g  208 (325)
T KOG0649|consen  134 GDGVIYQVDLEDGRIQREYRGHTD-----YVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWG  208 (325)
T ss_pred             CCeEEEEEEecCCEEEEEEcCCcc-----eeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccC
Confidence            455567799999999999999999     899988855556688999999999999999888765532         1 2


Q ss_pred             CceeEEEEccCCCEEEEEEccc
Q 041215           76 QPIPCSTFNTDGSIFAYSVCYD   97 (136)
Q Consensus        76 ~~v~~v~~sp~~~~l~s~~~dd   97 (136)
                      .+|-+++-  +..+++.|++-.
T Consensus       209 ~wigala~--~edWlvCGgGp~  228 (325)
T KOG0649|consen  209 KWIGALAV--NEDWLVCGGGPK  228 (325)
T ss_pred             ceeEEEec--cCceEEecCCCc
Confidence            44555554  555666665544

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=98.16  E-value=1.2e-05  Score=63.29  Aligned_cols=100  Identities=13%  Similarity=0.172  Sum_probs=79.5

Q ss_pred             CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCC-EEEEEcCCCcEEEEeCCCccee--eecccCC-C
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHH-TFATAGSDGAFNFWDKDSKQRL--KAMSRCG-Q   76 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~-~l~s~~~dg~v~vwd~~~~~~~--~~~~~h~-~   76 (136)
                      ||..||+++|+..|-+.+..+..+.-.+.     +|.+++|+|+|+ .+++++....++.||+.+.+..  ..+.++. .
T Consensus       230 vaG~d~~lrifqvDGk~N~~lqS~~l~~f-----Pi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~  304 (514)
T KOG2055|consen  230 VAGLDGTLRIFQVDGKVNPKLQSIHLEKF-----PIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEK  304 (514)
T ss_pred             EecCCCcEEEEEecCccChhheeeeeccC-----ccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccc
Confidence            57889999998888888777777665566     999999999997 8999999999999999887543  3344443 4


Q ss_pred             ceeEEEEccCCCEEEEEEccccccccccc
Q 041215           77 PIPCSTFNTDGSIFAYSVCYDWSKGAENH  105 (136)
Q Consensus        77 ~v~~v~~sp~~~~l~s~~~dd~~~~~~~~  105 (136)
                      .+.....+|++.+++.++..+|.-++..+
T Consensus       305 ~~e~FeVShd~~fia~~G~~G~I~lLhak  333 (514)
T KOG2055|consen  305 SMERFEVSHDSNFIAIAGNNGHIHLLHAK  333 (514)
T ss_pred             hhheeEecCCCCeEEEcccCceEEeehhh
Confidence            56777889999999999998886555443

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.16  E-value=1.6e-05  Score=60.03  Aligned_cols=88  Identities=15%  Similarity=0.244  Sum_probs=67.0

Q ss_pred             ceEEEEEeeCCC--CcceeEEEeeeCCCCccceeEEEEeCCC----CEEEEEcCCCcEEEEeCCCc--------------
Q 041215            6 GRVGVHHLDDSQ--QSKNFTFKCHRDGSEIYSVNSLNFHPIH----HTFATAGSDGAFNFWDKDSK--------------   65 (136)
Q Consensus         6 G~v~i~~~d~~~--~~~~~~l~~h~~~~~~~~v~~l~~~p~~----~~l~s~~~dg~v~vwd~~~~--------------   65 (136)
                      +.+.||.++...  -.....+.+|..     +|..++|.|+-    +.|++++.|| |+||.+...              
T Consensus       199 ~~~~Iye~~e~~rKw~kva~L~d~~d-----pI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~  272 (361)
T KOG2445|consen  199 NKVKIYEYNENGRKWLKVAELPDHTD-----PIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDL  272 (361)
T ss_pred             cceEEEEecCCcceeeeehhcCCCCC-----cceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCC
Confidence            356666665543  234455667777     99999999986    5799999999 999987621              


Q ss_pred             ------ceeeecccCCCceeEEEEccCCCEEEEEEccccc
Q 041215           66 ------QRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWS   99 (136)
Q Consensus        66 ------~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd~~   99 (136)
                            +.+.++.+|.++|-.++|+-.|..|++.+.|+-.
T Consensus       273 ~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~V  312 (361)
T KOG2445|consen  273 MTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCV  312 (361)
T ss_pred             ccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCcee
Confidence                  2346677899999999999999999987777743

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=98.15  E-value=6.9e-06  Score=67.26  Aligned_cols=75  Identities=15%  Similarity=0.178  Sum_probs=64.0

Q ss_pred             CCCccceeEEEEeCCCCEEEEEcCC-----CcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEcccccccccc
Q 041215           30 GSEIYSVNSLNFHPIHHTFATAGSD-----GAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAEN  104 (136)
Q Consensus        30 ~~~~~~v~~l~~~p~~~~l~s~~~d-----g~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd~~~~~~~  104 (136)
                      ..|.|.|.+++.+|++++++++...     ..|++|+..+-..++.+.+|+=.|+.++||||+++|++.+.|-.-..+..
T Consensus       522 YGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~  601 (764)
T KOG1063|consen  522 YGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEV  601 (764)
T ss_pred             ccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeee
Confidence            4566699999999999999999865     35999999988888889999999999999999999999998875544433

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=98.15  E-value=3.2e-06  Score=68.64  Aligned_cols=91  Identities=12%  Similarity=0.179  Sum_probs=72.7

Q ss_pred             CceeceEEEEEeeCCCC------cceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeee--ccc
Q 041215            2 GSIEGRVGVHHLDDSQQ------SKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKA--MSR   73 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~------~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~--~~~   73 (136)
                      +-.||.|.+  ||.+..      .+++.+.+|.+     .|..+.|-|-...|++++-|.++++||+....+...  +-+
T Consensus        70 adE~G~i~l--~dt~~~~fr~ee~~lk~~~aH~n-----AifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~G  142 (720)
T KOG0321|consen   70 ADEDGGIIL--FDTKSIVFRLEERQLKKPLAHKN-----AIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLG  142 (720)
T ss_pred             ecCCCceee--ecchhhhcchhhhhhcccccccc-----eeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecc
Confidence            456788877  766432      23577788999     999999999558999999999999999998877655  789


Q ss_pred             CCCceeEEEEccCCC-EEEEEEccccc
Q 041215           74 CGQPIPCSTFNTDGS-IFAYSVCYDWS   99 (136)
Q Consensus        74 h~~~v~~v~~sp~~~-~l~s~~~dd~~   99 (136)
                      |.+.|.++||.|... .|++|+-|.-.
T Consensus       143 H~~SvkS~cf~~~n~~vF~tGgRDg~i  169 (720)
T KOG0321|consen  143 HTGSVKSECFMPTNPAVFCTGGRDGEI  169 (720)
T ss_pred             cccccchhhhccCCCcceeeccCCCcE
Confidence            999999999999776 56776666543

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=98.13  E-value=1.7e-05  Score=67.24  Aligned_cols=87  Identities=17%  Similarity=0.127  Sum_probs=69.9

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceee-ecccCCCceeE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLK-AMSRCGQPIPC   80 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~-~~~~h~~~v~~   80 (136)
                      |+.-|.+.+|.+- .+.++. .+.+|.+     .+..+.|+.+|++++++|.|..+++|.+++.+... ..-+|.+.|..
T Consensus       151 gsv~~~iivW~~~-~dn~p~-~l~GHeG-----~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~  223 (967)
T KOG0974|consen  151 GSVFGEIIVWKPH-EDNKPI-RLKGHEG-----SIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWA  223 (967)
T ss_pred             ccccccEEEEecc-ccCCcc-eecccCC-----ceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEE
Confidence            5666777776665 233333 6789999     99999999999999999999999999999987665 55589999999


Q ss_pred             EEEccCCCEEEEEEccc
Q 041215           81 STFNTDGSIFAYSVCYD   97 (136)
Q Consensus        81 v~~sp~~~~l~s~~~dd   97 (136)
                      ++|.|.  .+++++.|=
T Consensus       224 ~~~~~n--~i~t~gedc  238 (967)
T KOG0974|consen  224 CCFLPN--RIITVGEDC  238 (967)
T ss_pred             EEeccc--eeEEeccce
Confidence            999998  777765543

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=98.13  E-value=1.2e-05  Score=60.76  Aligned_cols=86  Identities=15%  Similarity=0.252  Sum_probs=68.2

Q ss_pred             eceEEEEEeeCCC-CcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCC-cc--eeeecccCCCceeE
Q 041215            5 EGRVGVHHLDDSQ-QSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDS-KQ--RLKAMSRCGQPIPC   80 (136)
Q Consensus         5 dG~v~i~~~d~~~-~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~-~~--~~~~~~~h~~~v~~   80 (136)
                      ...+.|+..+-.. .+..++++.|..     .|++++|.|.++.|++|+.|..-++|.... +.  ..-.+-.++...++
T Consensus        31 ~~evhiy~~~~~~~w~~~htls~Hd~-----~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~  105 (361)
T KOG1523|consen   31 NHEVHIYSMLGADLWEPAHTLSEHDK-----IVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATC  105 (361)
T ss_pred             CceEEEEEecCCCCceeceehhhhCc-----ceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceee
Confidence            3456665554444 567899999999     999999999999999999999999998843 32  22344567889999


Q ss_pred             EEEccCCCEEEEEEc
Q 041215           81 STFNTDGSIFAYSVC   95 (136)
Q Consensus        81 v~~sp~~~~l~s~~~   95 (136)
                      |.|+|....||+|++
T Consensus       106 V~WsP~enkFAVgSg  120 (361)
T KOG1523|consen  106 VKWSPKENKFAVGSG  120 (361)
T ss_pred             EeecCcCceEEeccC
Confidence            999999999998866

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.13  E-value=4.2e-06  Score=71.36  Aligned_cols=91  Identities=19%  Similarity=0.247  Sum_probs=67.6

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcCC---CcEEEEeCCC-cceeeecccCCC
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSD---GAFNFWDKDS-KQRLKAMSRCGQ   76 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~d---g~v~vwd~~~-~~~~~~~~~h~~   76 (136)
                      |+.+|...|  ||.+..+++..+..+.+   +..++.+.|||+. ..++.++.|   ..|.+||++. ...++.+.+|..
T Consensus       180 ~s~sg~~~i--WDlr~~~pii~ls~~~~---~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~  254 (1049)
T KOG0307|consen  180 GSPSGRAVI--WDLRKKKPIIKLSDTPG---RMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQR  254 (1049)
T ss_pred             cCCCCCcee--ccccCCCcccccccCCC---ccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhccccc
Confidence            567788877  88887777777766543   1257899999999 455555544   3699999875 345677889999


Q ss_pred             ceeEEEEccCC-CEEEEEEccc
Q 041215           77 PIPCSTFNTDG-SIFAYSVCYD   97 (136)
Q Consensus        77 ~v~~v~~sp~~-~~l~s~~~dd   97 (136)
                      .|.+|.|++.+ +++++++.|.
T Consensus       255 GilslsWc~~D~~lllSsgkD~  276 (1049)
T KOG0307|consen  255 GILSLSWCPQDPRLLLSSGKDN  276 (1049)
T ss_pred             ceeeeccCCCCchhhhcccCCC
Confidence            99999999877 6777776665

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=98.12  E-value=5.3e-06  Score=68.16  Aligned_cols=62  Identities=18%  Similarity=0.350  Sum_probs=53.6

Q ss_pred             ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEccc
Q 041215           35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYD   97 (136)
Q Consensus        35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd   97 (136)
                      -|..++|-|||..|+-+.. ..+.+||...|..++++.+|.+.|+||+|+.+|..+|+|+.|-
T Consensus        14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK   75 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADK   75 (1081)
T ss_pred             chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCce
Confidence            5778999999965544432 4699999999999999999999999999999999999987765

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=98.12  E-value=2.6e-06  Score=63.04  Aligned_cols=54  Identities=22%  Similarity=0.360  Sum_probs=50.3

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeC
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDK   62 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~   62 (136)
                      +.+||+|+++.|  ++..++..++-|..     .|++++|+|+..+++.++.|..|.+|++
T Consensus       269 AGWD~RiRVysw--rtl~pLAVLkyHsa-----gvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  269 AGWDHRIRVYSW--RTLNPLAVLKYHSA-----GVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             cccCCcEEEEEe--ccCCchhhhhhhhc-----ceeEEEeCCCCchhhhccCCceEEeeec
Confidence            679999999666  88899999999999     9999999999999999999999999986

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=98.10  E-value=6.9e-05  Score=55.58  Aligned_cols=90  Identities=27%  Similarity=0.397  Sum_probs=71.5

Q ss_pred             eceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCC-EEEEEcCCCcEEEEeCCCcceee-ecccCCCceeEEE
Q 041215            5 EGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHH-TFATAGSDGAFNFWDKDSKQRLK-AMSRCGQPIPCST   82 (136)
Q Consensus         5 dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~-~l~s~~~dg~v~vwd~~~~~~~~-~~~~h~~~v~~v~   82 (136)
                      |+.+.+  |+.........+..|..     .|.+++|+|++. .+++++.|+.+.+||...+..+. .+..|...+ ...
T Consensus       177 ~~~~~~--~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~  248 (466)
T COG2319         177 DGTIKL--WDLRTGKPLSTLAGHTD-----PVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSS  248 (466)
T ss_pred             CCceEE--EEcCCCceEEeeccCCC-----ceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEe
Confidence            777777  77777788888888888     999999999997 66666999999999988777777 688887765 448


Q ss_pred             EccCCCEEEEEEcccccccc
Q 041215           83 FNTDGSIFAYSVCYDWSKGA  102 (136)
Q Consensus        83 ~sp~~~~l~s~~~dd~~~~~  102 (136)
                      |++++..+++++.+.....+
T Consensus       249 ~~~~~~~~~~~~~d~~~~~~  268 (466)
T COG2319         249 FSPDGSLLASGSSDGTIRLW  268 (466)
T ss_pred             ECCCCCEEEEecCCCcEEEe
Confidence            99999888866666654443

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.09  E-value=4.2e-06  Score=65.94  Aligned_cols=120  Identities=17%  Similarity=0.156  Sum_probs=89.7

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS   81 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v   81 (136)
                      ++..|-+  .+.|+.+|+....+..-.+     .+..++-+|..-.+-.|...|+|.+|.-.+.+.+..+-.|.++|.+|
T Consensus       227 ~~~~G~L--~Y~DVS~GklVa~~~t~~G-----~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~si  299 (545)
T KOG1272|consen  227 ASEAGFL--KYQDVSTGKLVASIRTGAG-----RTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSI  299 (545)
T ss_pred             cccCCce--EEEeechhhhhHHHHccCC-----ccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceE
Confidence            3445555  4588899999888887778     88889999988888899999999999998888888888999999999


Q ss_pred             EEccCCCEEEEEEcccccccccccCCCCCcceEEEEcCCcccccccC
Q 041215           82 TFNTDGSIFAYSVCYDWSKGAENHNPATAKTYIYLHLPQETEVKGKP  128 (136)
Q Consensus        82 ~~sp~~~~l~s~~~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (136)
                      ++.++|++.+|++-|.-.+..+...-.....+..-+|.+...++-|+
T Consensus       300 Av~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg  346 (545)
T KOG1272|consen  300 AVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG  346 (545)
T ss_pred             EECCCCcEEeecccccceeEeeeccccccceeecCCCcccccccccc
Confidence            99999999999988774443333322212233333555555544443

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=98.08  E-value=1.7e-05  Score=63.27  Aligned_cols=90  Identities=23%  Similarity=0.326  Sum_probs=67.9

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCcceee-ecccCCCcee
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQRLK-AMSRCGQPIP   79 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~~~~-~~~~h~~~v~   79 (136)
                      +|..|.|.|  ....++.....|..-.+    +.|.-+.|+|.. .+|.+++.+|.|.+||+.....++ ....|.+|+.
T Consensus       139 vs~gGdiii--h~~~t~~~tt~f~~~sg----qsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~  212 (673)
T KOG4378|consen  139 VSDGGDIII--HGTKTKQKTTTFTIDSG----QSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCR  212 (673)
T ss_pred             eccCCcEEE--EecccCccccceecCCC----CeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcC
Confidence            456677777  44466666667653323    255689999988 578899999999999998765554 4567999999


Q ss_pred             EEEEccCCCEEEEEEccc
Q 041215           80 CSTFNTDGSIFAYSVCYD   97 (136)
Q Consensus        80 ~v~~sp~~~~l~s~~~dd   97 (136)
                      .|+|+|....|+..-++|
T Consensus       213 gicfspsne~l~vsVG~D  230 (673)
T KOG4378|consen  213 GICFSPSNEALLVSVGYD  230 (673)
T ss_pred             cceecCCccceEEEeccc
Confidence            999999988777666665

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=98.07  E-value=3.9e-05  Score=56.05  Aligned_cols=82  Identities=13%  Similarity=0.102  Sum_probs=68.3

Q ss_pred             EEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCc----ceeeecccCCCceeEEEEccC
Q 041215           11 HHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSK----QRLKAMSRCGQPIPCSTFNTD   86 (136)
Q Consensus        11 ~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~----~~~~~~~~h~~~v~~v~~sp~   86 (136)
                      -+||++.+.++..|..|..     .|.|+.|+|...++.+++.|..|++=|++-.    ..+...-.|.+.+-.+.|+|+
T Consensus       256 ~lydirg~r~iq~f~phsa-----dir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~  330 (350)
T KOG0641|consen  256 MLYDIRGGRMIQRFHPHSA-----DIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQ  330 (350)
T ss_pred             EEEEeeCCceeeeeCCCcc-----ceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCc
Confidence            3489999999999999999     9999999999999999999999999988632    123344578899999999999


Q ss_pred             CCEEEEEEccc
Q 041215           87 GSIFAYSVCYD   97 (136)
Q Consensus        87 ~~~l~s~~~dd   97 (136)
                      ...+++.+.|-
T Consensus       331 d~sfisssadk  341 (350)
T KOG0641|consen  331 DFSFISSSADK  341 (350)
T ss_pred             cceeeeccCcc
Confidence            98888766554

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.04  E-value=7.2e-06  Score=69.98  Aligned_cols=90  Identities=13%  Similarity=0.128  Sum_probs=74.6

Q ss_pred             EEEEEeeCC-CCcceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEcc
Q 041215            8 VGVHHLDDS-QQSKNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNT   85 (136)
Q Consensus         8 v~i~~~d~~-~~~~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp   85 (136)
                      =.|.+||.+ ...+..++.+|..     .|.+++|++.+ ++|++++.|+.|.+|+.++++.+.++.....++..+.|+|
T Consensus       232 PviqlWDlR~assP~k~~~~H~~-----GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~p  306 (1049)
T KOG0307|consen  232 PVIQLWDLRFASSPLKILEGHQR-----GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCP  306 (1049)
T ss_pred             ceeEeecccccCCchhhhccccc-----ceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecC
Confidence            345568865 3466777889999     99999999888 8999999999999999999999999999889999999999


Q ss_pred             CCC-EEEEEEcccccccc
Q 041215           86 DGS-IFAYSVCYDWSKGA  102 (136)
Q Consensus        86 ~~~-~l~s~~~dd~~~~~  102 (136)
                      ... +++.++-+++...+
T Consensus       307 r~P~~~A~asfdgkI~I~  324 (1049)
T KOG0307|consen  307 RNPSVMAAASFDGKISIY  324 (1049)
T ss_pred             CCcchhhhheeccceeee
Confidence            887 56656666654433

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=98.03  E-value=2.4e-06  Score=71.33  Aligned_cols=79  Identities=13%  Similarity=0.189  Sum_probs=71.3

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS   81 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v   81 (136)
                      ||.|-.+.||.  ..+...+....+|.+     .++.++.+....++++++.|..|++|.+.++..+..+.+|.+.|++|
T Consensus       208 gsdd~lvKiwS--~et~~~lAs~rGhs~-----ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtai  280 (1113)
T KOG0644|consen  208 GSDDRLVKIWS--METARCLASCRGHSG-----DITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAI  280 (1113)
T ss_pred             cCccceeeeee--ccchhhhccCCCCcc-----ccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeee
Confidence            67777788855  577788889999999     99999999888899999999999999999999999999999999999


Q ss_pred             EEccCC
Q 041215           82 TFNTDG   87 (136)
Q Consensus        82 ~~sp~~   87 (136)
                      +|+|..
T Consensus       281 afsP~~  286 (1113)
T KOG0644|consen  281 AFSPRA  286 (1113)
T ss_pred             ccCccc
Confidence            999976

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.01  E-value=6.8e-06  Score=66.53  Aligned_cols=95  Identities=16%  Similarity=0.181  Sum_probs=74.1

Q ss_pred             CCceeceEEEEEeeCC-CCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeC--CC----cc---eeee
Q 041215            1 VGSIEGRVGVHHLDDS-QQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDK--DS----KQ---RLKA   70 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~-~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~--~~----~~---~~~~   70 (136)
                      +||.|+.+++  ||.. +.++..++.-|..     .+..++||+...++++|+.||.+.+|.-  .+    ..   .+..
T Consensus       624 ~gs~d~k~~W--fDldlsskPyk~lr~H~~-----avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~  696 (733)
T KOG0650|consen  624 LGSYDKKMCW--FDLDLSSKPYKTLRLHEK-----AVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKR  696 (733)
T ss_pred             EecCCCeeEE--EEcccCcchhHHhhhhhh-----hhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeee
Confidence            4788888887  6654 4577788888998     9999999999999999999999988752  11    11   2356


Q ss_pred             cccCCCc----eeEEEEccCCCEEEEEEcccccccc
Q 041215           71 MSRCGQP----IPCSTFNTDGSIFAYSVCYDWSKGA  102 (136)
Q Consensus        71 ~~~h~~~----v~~v~~sp~~~~l~s~~~dd~~~~~  102 (136)
                      +.+|...    |..+.|+|...+|.+++.|+..+.+
T Consensus       697 L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  697 LRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             ccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence            7788544    8889999999999999888765443

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=98.00  E-value=2.4e-05  Score=63.07  Aligned_cols=101  Identities=17%  Similarity=0.184  Sum_probs=78.4

Q ss_pred             CCceeceEEEEEeeCCCCcceeEE-EeeeCCCCccceeEEEEeCCC--CEEEEEcCCCcEEEEeCCC----------cce
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTF-KCHRDGSEIYSVNSLNFHPIH--HTFATAGSDGAFNFWDKDS----------KQR   67 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l-~~h~~~~~~~~v~~l~~~p~~--~~l~s~~~dg~v~vwd~~~----------~~~   67 (136)
                      .||.|-.+.|  ||+-..+.++.+ .+|..     .|.++.|-|..  +.+++|+.|..|++||+..          ...
T Consensus        67 SGSDD~r~iv--Wd~~~~KllhsI~TgHta-----NIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~  139 (758)
T KOG1310|consen   67 SGSDDTRLIV--WDPFEYKLLHSISTGHTA-----NIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEET  139 (758)
T ss_pred             ecCCcceEEe--ecchhcceeeeeeccccc-----ceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccch
Confidence            3676766766  777666666665 47888     99999998876  6899999999999999874          122


Q ss_pred             eeecccCCCceeEEEEccCC-CEEEEEEcccccccccccCCC
Q 041215           68 LKAMSRCGQPIPCSTFNTDG-SIFAYSVCYDWSKGAENHNPA  108 (136)
Q Consensus        68 ~~~~~~h~~~v~~v~~sp~~-~~l~s~~~dd~~~~~~~~~~~  108 (136)
                      ...+..|...|..|+-.|++ ..+-+++.|+...+++...|.
T Consensus       140 ~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph  181 (758)
T KOG1310|consen  140 TRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPH  181 (758)
T ss_pred             hhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCc
Confidence            34566788899999999998 567778888888888777654

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=97.98  E-value=1.1e-05  Score=64.76  Aligned_cols=73  Identities=22%  Similarity=0.464  Sum_probs=63.2

Q ss_pred             ceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCC--------cceeeecccCCCceeEEEEccCCCEEE
Q 041215           20 KNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDS--------KQRLKAMSRCGQPIPCSTFNTDGSIFA   91 (136)
Q Consensus        20 ~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~--------~~~~~~~~~h~~~v~~v~~sp~~~~l~   91 (136)
                      +.+++..|..     -+..+.|+|....|++++.|+.|.+|+++.        -+.+.+|.+|.++|.|+++.+.+..+.
T Consensus       286 ik~tl~s~~d-----~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~y  360 (577)
T KOG0642|consen  286 IKFTLRSHDD-----CIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCY  360 (577)
T ss_pred             eeeeeecchh-----hhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEE
Confidence            4456666766     889999999999999999999999999932        245689999999999999999999999


Q ss_pred             EEEccc
Q 041215           92 YSVCYD   97 (136)
Q Consensus        92 s~~~dd   97 (136)
                      +|+.|+
T Consensus       361 sgg~Dg  366 (577)
T KOG0642|consen  361 SGGIDG  366 (577)
T ss_pred             eeccCc
Confidence            998888

>smart00320 WD40 WD40 repeats

Probab=97.97  E-value=3.5e-05  Score=38.09  Aligned_cols=38  Identities=34%  Similarity=0.554  Sum_probs=33.1

Q ss_pred             cceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEe
Q 041215           19 SKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWD   61 (136)
Q Consensus        19 ~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd   61 (136)
                      .....+..|..     .|.++.|++.+..+++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~-----~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTG-----PVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCC-----ceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            34566777888     999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=97.95  E-value=1.5e-05  Score=60.54  Aligned_cols=59  Identities=17%  Similarity=0.189  Sum_probs=49.3

Q ss_pred             CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCC
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKD   63 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~   63 (136)
                      +||.|..|++  |++++...+..|.+-.+  |++.|.+++|++++.++++++.|..|.+|++.
T Consensus       153 s~SkD~svRl--wnI~~~~Cv~VfGG~eg--HrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~  211 (385)
T KOG1034|consen  153 SASKDHSVRL--WNIQTDVCVAVFGGVEG--HRDEVLSVDFSLDGDRIASCGMDHSLKLWRLN  211 (385)
T ss_pred             EecCCceEEE--EeccCCeEEEEeccccc--ccCcEEEEEEcCCCCeeeccCCcceEEEEecC
Confidence            3788999998  67788888877754322  33399999999999999999999999999987

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=97.92  E-value=2.7e-05  Score=40.59  Aligned_cols=34  Identities=12%  Similarity=0.181  Sum_probs=30.3

Q ss_pred             ceeeecccCCCceeEEEEccCCCEEEEEEccccc
Q 041215           66 QRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWS   99 (136)
Q Consensus        66 ~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd~~   99 (136)
                      +++.++.+|.+.|++|+|+|++.+|++++.|...
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i   35 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTI   35 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEE
Confidence            5678899999999999999999999999887654

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=97.91  E-value=9.9e-05  Score=56.93  Aligned_cols=82  Identities=12%  Similarity=0.222  Sum_probs=55.9

Q ss_pred             ceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCC-cceeeecccCCCceeEEEEc
Q 041215            6 GRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDS-KQRLKAMSRCGQPIPCSTFN   84 (136)
Q Consensus         6 G~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~-~~~~~~~~~h~~~v~~v~~s   84 (136)
                      ..|.|  ||+.++...-...--.+     .++-+.|+|++..|+++..|+..++|+... ....... ...+.|+..+|+
T Consensus       218 ssi~i--Wdpdtg~~~pL~~~glg-----g~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~-lgsgrvqtacWs  289 (445)
T KOG2139|consen  218 SSIMI--WDPDTGQKIPLIPKGLG-----GFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWI-LGSGRVQTACWS  289 (445)
T ss_pred             ceEEE--EcCCCCCcccccccCCC-----ceeeEEEcCCCCEEEEecccceeeeehhcccceeccee-ccCCceeeeeec
Confidence            34555  66665443332222234     678899999999999999999999996543 3333333 334599999999


Q ss_pred             cCCCEEEEEEc
Q 041215           85 TDGSIFAYSVC   95 (136)
Q Consensus        85 p~~~~l~s~~~   95 (136)
                      |+|+.|+.++.
T Consensus       290 pcGsfLLf~~s  300 (445)
T KOG2139|consen  290 PCGSFLLFACS  300 (445)
T ss_pred             CCCCEEEEEEc
Confidence            99997665544

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=97.83  E-value=0.00012  Score=55.08  Aligned_cols=75  Identities=16%  Similarity=0.158  Sum_probs=59.1

Q ss_pred             eeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCC-Ccceeee-cccCCCceeEEEEcc-CCCEEEEEEcc
Q 041215           21 NFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKD-SKQRLKA-MSRCGQPIPCSTFNT-DGSIFAYSVCY   96 (136)
Q Consensus        21 ~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~-~~~~~~~-~~~h~~~v~~v~~sp-~~~~l~s~~~d   96 (136)
                      ..+++.|+-     +++.+.|+... +++++|++|+.+..||.+ .+..+.. ..-|...|.+|.-+| .+.++++|+-|
T Consensus       158 vq~wk~He~-----E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYD  232 (339)
T KOG0280|consen  158 VQTWKVHEF-----EAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYD  232 (339)
T ss_pred             cccccccce-----eeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccc
Confidence            347788888     99999997666 799999999999999998 3444433 456788899998886 46789999888


Q ss_pred             cccc
Q 041215           97 DWSK  100 (136)
Q Consensus        97 d~~~  100 (136)
                      +...
T Consensus       233 e~i~  236 (339)
T KOG0280|consen  233 ECIR  236 (339)
T ss_pred             ccee
Confidence            8764

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=97.81  E-value=0.00021  Score=53.80  Aligned_cols=107  Identities=8%  Similarity=0.131  Sum_probs=75.6

Q ss_pred             CceeceEEEEEeeCCC--CcceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCcce---eeecccCC
Q 041215            2 GSIEGRVGVHHLDDSQ--QSKNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQR---LKAMSRCG   75 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~--~~~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~~---~~~~~~h~   75 (136)
                      ++.+..+++|..+...  -.....+..++......++++..|+.-. +++.+.+-|-+..+||++++..   .-++-.|.
T Consensus       117 ATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHD  196 (364)
T KOG0290|consen  117 ATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHD  196 (364)
T ss_pred             hcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecC
Confidence            4566778887776432  2223334334444444589999998666 7899999999999999998633   45677999


Q ss_pred             CceeEEEEccCCC-EEEEEEcccccccccccCCC
Q 041215           76 QPIPCSTFNTDGS-IFAYSVCYDWSKGAENHNPA  108 (136)
Q Consensus        76 ~~v~~v~~sp~~~-~l~s~~~dd~~~~~~~~~~~  108 (136)
                      ..|..|+|...+. +||+.+.|+=.+-|+-...+
T Consensus       197 KEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~le  230 (364)
T KOG0290|consen  197 KEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLE  230 (364)
T ss_pred             cceeEEEeccCccceEEEecCCCcEEEEEecccc
Confidence            9999999998664 67777777755555554444

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=97.80  E-value=0.00017  Score=53.20  Aligned_cols=97  Identities=11%  Similarity=0.111  Sum_probs=70.7

Q ss_pred             eeceEEEEEeeCCCC----cceeEE--EeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCc
Q 041215            4 IEGRVGVHHLDDSQQ----SKNFTF--KCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQP   77 (136)
Q Consensus         4 ~dG~v~i~~~d~~~~----~~~~~l--~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~   77 (136)
                      -||.|.-|.|.....    +.+...  .-|.+..++-.|+++.+.|..+-++.++-|+.++.||+++|....++.+|.+-
T Consensus        79 gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDY  158 (325)
T KOG0649|consen   79 GDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDY  158 (325)
T ss_pred             cCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcce
Confidence            368888888854211    111111  11222333336899999999877777778999999999999999999999999


Q ss_pred             eeEEEEccCCCEEEEEEcccccc
Q 041215           78 IPCSTFNTDGSIFAYSVCYDWSK  100 (136)
Q Consensus        78 v~~v~~sp~~~~l~s~~~dd~~~  100 (136)
                      |+|+.--.....+++|+.|+..+
T Consensus       159 vH~vv~R~~~~qilsG~EDGtvR  181 (325)
T KOG0649|consen  159 VHSVVGRNANGQILSGAEDGTVR  181 (325)
T ss_pred             eeeeeecccCcceeecCCCccEE
Confidence            99999966666778888888663

>PRK01742 tolB translocation protein TolB; Provisional

Probab=97.79  E-value=0.00025  Score=56.24  Aligned_cols=78  Identities=18%  Similarity=0.211  Sum_probs=54.0

Q ss_pred             EEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCC---CcEEEEeCCCcce--eeecccCCCceeEEEE
Q 041215            9 GVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSD---GAFNFWDKDSKQR--LKAMSRCGQPIPCSTF   83 (136)
Q Consensus         9 ~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~d---g~v~vwd~~~~~~--~~~~~~h~~~v~~v~~   83 (136)
                      .|+++|..... ...+..+..     .+...+|+|+|+.|+..+.+   ..|.+||+.++..  +..+.++   ...++|
T Consensus       185 ~i~i~d~dg~~-~~~lt~~~~-----~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~w  255 (429)
T PRK01742        185 EVRVADYDGFN-QFIVNRSSQ-----PLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAF  255 (429)
T ss_pred             EEEEECCCCCC-ceEeccCCC-----ccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeE
Confidence            44556654333 345566777     89999999999888777643   3699999988753  3333333   357899


Q ss_pred             ccCCCEEEEEEc
Q 041215           84 NTDGSIFAYSVC   95 (136)
Q Consensus        84 sp~~~~l~s~~~   95 (136)
                      +|+|+.|+.++.
T Consensus       256 SPDG~~La~~~~  267 (429)
T PRK01742        256 SPDGSRLAFASS  267 (429)
T ss_pred             CCCCCEEEEEEe
Confidence            999998887653

>PRK05137 tolB translocation protein TolB; Provisional

Probab=97.74  E-value=0.00044  Score=54.80  Aligned_cols=81  Identities=14%  Similarity=0.113  Sum_probs=58.1

Q ss_pred             eEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcC---CCcEEEEeCCCcceeeecccCCCceeEEEE
Q 041215            7 RVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGS---DGAFNFWDKDSKQRLKAMSRCGQPIPCSTF   83 (136)
Q Consensus         7 ~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~---dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~   83 (136)
                      .-.||.+|.. +.....+..+..     .+...+|+|+|+.|+..+.   +..|.+||+.++.. ..+..+.+.+...+|
T Consensus       181 ~~~l~~~d~d-g~~~~~lt~~~~-----~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~  253 (435)
T PRK05137        181 IKRLAIMDQD-GANVRYLTDGSS-----LVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRF  253 (435)
T ss_pred             ceEEEEECCC-CCCcEEEecCCC-----CeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEE
Confidence            3456667764 344455666777     8999999999987776653   35799999988764 344455667788999


Q ss_pred             ccCCCEEEEEE
Q 041215           84 NTDGSIFAYSV   94 (136)
Q Consensus        84 sp~~~~l~s~~   94 (136)
                      +|+|+.++...
T Consensus       254 SPDG~~la~~~  264 (435)
T PRK05137        254 SPDGRKVVMSL  264 (435)
T ss_pred             CCCCCEEEEEE
Confidence            99999776443

>KOG4328 consensus WD40 protein [Function unknown]

Probab=97.71  E-value=0.0001  Score=58.04  Aligned_cols=92  Identities=16%  Similarity=0.311  Sum_probs=70.8

Q ss_pred             CCceeceEEEEEeeC--CCCcceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCcce--eeecccCC
Q 041215            1 VGSIEGRVGVHHLDD--SQQSKNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQR--LKAMSRCG   75 (136)
Q Consensus         1 vgs~dG~v~i~~~d~--~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~~--~~~~~~h~   75 (136)
                      +|+.-|+|-+|.++.  ....-.+-+..|..     +|+++.|+|.. ..+.+.+.||+|++-|++....  +.......
T Consensus       205 ~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~-----~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~  279 (498)
T KOG4328|consen  205 VGDKGGQVGLWNFGTQEKDKDGVYLFTPHSG-----PVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDN  279 (498)
T ss_pred             EccCCCcEEEEecCCCCCccCceEEeccCCc-----cccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccc
Confidence            578889999988863  33445677788999     99999999988 6888999999999999987533  22232345


Q ss_pred             CceeEEEEccCCCEEEEEEccc
Q 041215           76 QPIPCSTFNTDGSIFAYSVCYD   97 (136)
Q Consensus        76 ~~v~~v~~sp~~~~l~s~~~dd   97 (136)
                      ..+..+.|+.+...++.+..++
T Consensus       280 ~~fs~~d~~~e~~~vl~~~~~G  301 (498)
T KOG4328|consen  280 IWFSSLDFSAESRSVLFGDNVG  301 (498)
T ss_pred             eeeeeccccCCCccEEEeeccc
Confidence            6778889988888888776665

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=97.71  E-value=0.00014  Score=55.80  Aligned_cols=92  Identities=15%  Similarity=0.247  Sum_probs=77.5

Q ss_pred             CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCc-ceeeecccCCCcee
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSK-QRLKAMSRCGQPIP   79 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~-~~~~~~~~h~~~v~   79 (136)
                      ||...|.|....++...-..+.++++|..     .+.+++|.|....|+++..|-.+.+||+--. ....++.+|.+.|+
T Consensus       170 vGd~~gqvt~lr~~~~~~~~i~~~~~h~~-----~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~  244 (404)
T KOG1409|consen  170 VGDHSGQITMLKLEQNGCQLITTFNGHTG-----EVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQ  244 (404)
T ss_pred             ecccccceEEEEEeecCCceEEEEcCccc-----ceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhh
Confidence            45567778777777777788899999999     9999999999999999999999999998643 33567889999999


Q ss_pred             EEEEccCCCEEEEEEccc
Q 041215           80 CSTFNTDGSIFAYSVCYD   97 (136)
Q Consensus        80 ~v~~sp~~~~l~s~~~dd   97 (136)
                      .+++.+....+.+++.|.
T Consensus       245 ~l~~~~~t~~l~S~~edg  262 (404)
T KOG1409|consen  245 ALSYAQHTRQLISCGEDG  262 (404)
T ss_pred             hhhhhhhheeeeeccCCC
Confidence            999988888888776665

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=97.67  E-value=0.00042  Score=53.56  Aligned_cols=63  Identities=17%  Similarity=0.345  Sum_probs=51.1

Q ss_pred             ceeEEEEeCCCCEEEEEcCC-CcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEccc
Q 041215           35 SVNSLNFHPIHHTFATAGSD-GAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYD   97 (136)
Q Consensus        35 ~v~~l~~~p~~~~l~s~~~d-g~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd   97 (136)
                      +|+.+.|.+||..+++++-+ ..|.+||..++..+--.....+.+.-+.||||+.++..+..|.
T Consensus       197 pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~da  260 (445)
T KOG2139|consen  197 PVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDA  260 (445)
T ss_pred             eeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccc
Confidence            89999999999999998875 5699999999876544444557788999999999888765544

>PRK02889 tolB translocation protein TolB; Provisional

Probab=97.67  E-value=0.00046  Score=54.68  Aligned_cols=82  Identities=12%  Similarity=0.146  Sum_probs=55.6

Q ss_pred             ceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCC---CcEEEEeCCCcceeeecccCCCceeEEE
Q 041215            6 GRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSD---GAFNFWDKDSKQRLKAMSRCGQPIPCST   82 (136)
Q Consensus         6 G~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~d---g~v~vwd~~~~~~~~~~~~h~~~v~~v~   82 (136)
                      +.-.||.+|.. +.....+..+..     .+.+.+|+|+|+.|+..+.+   ..|.+||+.++... .+....+.+.+.+
T Consensus       174 ~~~~L~~~D~d-G~~~~~l~~~~~-----~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~-~l~~~~g~~~~~~  246 (427)
T PRK02889        174 NRYQLQISDAD-GQNAQSALSSPE-----PIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR-VVANFKGSNSAPA  246 (427)
T ss_pred             CccEEEEECCC-CCCceEeccCCC-----CcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE-EeecCCCCccceE
Confidence            34456667663 333444455666     88899999999877666542   35999999887653 3333345567899


Q ss_pred             EccCCCEEEEEE
Q 041215           83 FNTDGSIFAYSV   94 (136)
Q Consensus        83 ~sp~~~~l~s~~   94 (136)
                      |+|+|+.++...
T Consensus       247 ~SPDG~~la~~~  258 (427)
T PRK02889        247 WSPDGRTLAVAL  258 (427)
T ss_pred             ECCCCCEEEEEE
Confidence            999999877543

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.64  E-value=0.00041  Score=55.95  Aligned_cols=82  Identities=12%  Similarity=0.055  Sum_probs=72.6

Q ss_pred             EEEEeeCCCCcceeEEE--eeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccC
Q 041215            9 GVHHLDDSQQSKNFTFK--CHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTD   86 (136)
Q Consensus         9 ~i~~~d~~~~~~~~~l~--~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~   86 (136)
                      .++.|+...++..+.+.  +|.+     .|+++.++.+...|.+++.|+.+..|+...+..++.+.+....+.+++++||
T Consensus        81 ~v~~ys~~~g~it~~~st~~h~~-----~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D  155 (541)
T KOG4547|consen   81 SVLLYSVAGGEITAKLSTDKHYG-----NVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPD  155 (541)
T ss_pred             cEEEEEecCCeEEEEEecCCCCC-----cceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCC
Confidence            34558888888888876  5888     9999999999999999999999999999999888888888889999999999


Q ss_pred             CCEEEEEEc
Q 041215           87 GSIFAYSVC   95 (136)
Q Consensus        87 ~~~l~s~~~   95 (136)
                      +.++++|+.
T Consensus       156 ~~~l~~as~  164 (541)
T KOG4547|consen  156 GKILLTASR  164 (541)
T ss_pred             CCEEEeccc
Confidence            999998866

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=97.58  E-value=0.00022  Score=54.41  Aligned_cols=57  Identities=14%  Similarity=0.199  Sum_probs=39.3

Q ss_pred             ceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeC
Q 041215            3 SIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDK   62 (136)
Q Consensus         3 s~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~   62 (136)
                      |.|.-|.+  ||+-+++....+...+...+.-...++.|+|||..|++|- ...|++||+
T Consensus       130 sr~~PIh~--wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt  186 (406)
T KOG2919|consen  130 SRDQPIHL--WDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDT  186 (406)
T ss_pred             cccCceee--eeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeec
Confidence            44555544  8888887777766544333333567899999998888774 456899887

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=97.57  E-value=0.00016  Score=59.14  Aligned_cols=87  Identities=18%  Similarity=0.350  Sum_probs=65.2

Q ss_pred             eceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCc--ceeeecccCCCceeEE
Q 041215            5 EGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDSK--QRLKAMSRCGQPIPCS   81 (136)
Q Consensus         5 dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~--~~~~~~~~h~~~v~~v   81 (136)
                      |.+++||.-+. ...+++.+..+..     .|.+++|+|-. ..|+++..+|.|.+||+...  ..+.....+....+.+
T Consensus       419 DW~vriWs~~~-~~~Pl~~~~~~~~-----~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~  492 (555)
T KOG1587|consen  419 DWTVRIWSEDV-IASPLLSLDSSPD-----YVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRV  492 (555)
T ss_pred             cceeEeccccC-CCCcchhhhhccc-----eeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccccccccccee
Confidence            78888844432 4567777777777     79999999988 57778888999999998642  3344444456677889


Q ss_pred             EEccCCCEEEEEEccc
Q 041215           82 TFNTDGSIFAYSVCYD   97 (136)
Q Consensus        82 ~~sp~~~~l~s~~~dd   97 (136)
                      .|++.|++++.|...+
T Consensus       493 ~~s~~g~~lavGd~~G  508 (555)
T KOG1587|consen  493 RWSPNGKLLAVGDANG  508 (555)
T ss_pred             ecCCCCcEEEEecCCC
Confidence            9999999999876554

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=97.56  E-value=0.00052  Score=57.58  Aligned_cols=66  Identities=14%  Similarity=0.283  Sum_probs=52.7

Q ss_pred             CccceeEEEEeCCCCEEEEEcCCCcEEEEeCCC--c--ceeeecccCCCceeEEEEccCCCEEEEEEccc
Q 041215           32 EIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDS--K--QRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYD   97 (136)
Q Consensus        32 ~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~--~--~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd   97 (136)
                      |-+.+++.++||.+++++++..||.|.+|+-..  .  .....+.=|.+.|++++|+++|.+|.+|+...
T Consensus       204 Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~  273 (792)
T KOG1963|consen  204 HTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREG  273 (792)
T ss_pred             hcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccce
Confidence            333789999999999999999999999997332  1  22234445789999999999999999987654

>PRK01742 tolB translocation protein TolB; Provisional

Probab=97.56  E-value=0.00036  Score=55.32  Aligned_cols=84  Identities=7%  Similarity=0.090  Sum_probs=55.0

Q ss_pred             eeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEE-EEcCCCcEEEEeCCCc-ceeeecccCCCceeEE
Q 041215            4 IEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFA-TAGSDGAFNFWDKDSK-QRLKAMSRCGQPIPCS   81 (136)
Q Consensus         4 ~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~-s~~~dg~v~vwd~~~~-~~~~~~~~h~~~v~~v   81 (136)
                      .+|...||.+|..++.. ..+..+..     .+....|+|+|..|+ +...++...+|++... .....+ .+..  .+.
T Consensus       268 ~~g~~~Iy~~d~~~~~~-~~lt~~~~-----~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~  338 (429)
T PRK01742        268 KDGVLNIYVMGANGGTP-SQLTSGAG-----NNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSA  338 (429)
T ss_pred             cCCcEEEEEEECCCCCe-EeeccCCC-----CcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCc
Confidence            47777888888765543 34455555     678899999998655 4446778888876532 222222 3333  457


Q ss_pred             EEccCCCEEEEEEcc
Q 041215           82 TFNTDGSIFAYSVCY   96 (136)
Q Consensus        82 ~~sp~~~~l~s~~~d   96 (136)
                      .|+|+++.++.++.+
T Consensus       339 ~~SpDG~~ia~~~~~  353 (429)
T PRK01742        339 QISADGKTLVMINGD  353 (429)
T ss_pred             cCCCCCCEEEEEcCC
Confidence            899999988776553

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.49  E-value=0.0016  Score=52.91  Aligned_cols=68  Identities=13%  Similarity=0.142  Sum_probs=53.8

Q ss_pred             ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEcccccccccc
Q 041215           35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAEN  104 (136)
Q Consensus        35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd~~~~~~~  104 (136)
                      .|.+++++|+...|+.|..||.|.+||...+..  .+....-..+.++|+|+|.+++.|+.-+-.-.|++
T Consensus       261 ~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t--~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~  328 (545)
T PF11768_consen  261 QVICCARSPSEDKLVLGCEDGSIILYDTTRGVT--LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDM  328 (545)
T ss_pred             cceEEecCcccceEEEEecCCeEEEEEcCCCee--eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEe
Confidence            899999999999999999999999999876532  23344456789999999999999877554433444

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=97.48  E-value=0.00011  Score=54.49  Aligned_cols=63  Identities=17%  Similarity=0.237  Sum_probs=51.0

Q ss_pred             ceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCcc-eeeecccCCCceeEEEEccC-CCEEEEEEccc
Q 041215           35 SVNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQ-RLKAMSRCGQPIPCSTFNTD-GSIFAYSVCYD   97 (136)
Q Consensus        35 ~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~-~~~~~~~h~~~v~~v~~sp~-~~~l~s~~~dd   97 (136)
                      .|.+++-||.. +.+++|+.||.+-+||.++.. ....+..|..++..|.|+|. +..|++++.|+
T Consensus       181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedG  246 (319)
T KOG4714|consen  181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDG  246 (319)
T ss_pred             cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCC
Confidence            68899999988 678888889999999998763 34567789999999999995 45677776655

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=97.48  E-value=0.00067  Score=55.59  Aligned_cols=90  Identities=17%  Similarity=0.176  Sum_probs=63.5

Q ss_pred             CCceeceEEE-EEeeCCCC-----cceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCC-Ccceeeeccc
Q 041215            1 VGSIEGRVGV-HHLDDSQQ-----SKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKD-SKQRLKAMSR   73 (136)
Q Consensus         1 vgs~dG~v~i-~~~d~~~~-----~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~-~~~~~~~~~~   73 (136)
                      ||+.+|.|.- ...+.+..     +....+.+|.+     +|.++.++|-+..++..+.|..+++|... ....+..+..
T Consensus       365 VGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g-----~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~  439 (555)
T KOG1587|consen  365 VGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIG-----PVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDS  439 (555)
T ss_pred             EEcCCcEEEEEeccCCcccccccccccccccccCc-----ceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhh
Confidence            5788888765 22222222     22345567778     99999999999655555559999999987 5666777777


Q ss_pred             CCCceeEEEEccCCCEEEEEEc
Q 041215           74 CGQPIPCSTFNTDGSIFAYSVC   95 (136)
Q Consensus        74 h~~~v~~v~~sp~~~~l~s~~~   95 (136)
                      +.+.|++++|||....+.....
T Consensus       440 ~~~~v~~vaWSptrpavF~~~d  461 (555)
T KOG1587|consen  440 SPDYVTDVAWSPTRPAVFATVD  461 (555)
T ss_pred             ccceeeeeEEcCcCceEEEEEc
Confidence            8788999999998765444333

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.47  E-value=0.00051  Score=59.28  Aligned_cols=87  Identities=17%  Similarity=0.291  Sum_probs=66.6

Q ss_pred             CceeceEEEEEeeCCCCc---ceeEEEeeeCCCCccc--eeEEEEeCCC-CEEEEEcCCCcEEEEeCCCcce--eeeccc
Q 041215            2 GSIEGRVGVHHLDDSQQS---KNFTFKCHRDGSEIYS--VNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQR--LKAMSR   73 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~---~~~~l~~h~~~~~~~~--v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~~--~~~~~~   73 (136)
                      |-.||.+++  ||.+...   ....++.|..     .  |..+.+.+.| ..|++|+.+|.|++||++....  ..+...
T Consensus      1227 GfaDGsvRv--yD~R~a~~ds~v~~~R~h~~-----~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~ 1299 (1387)
T KOG1517|consen 1227 GFADGSVRV--YDRRMAPPDSLVCVYREHND-----VEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVA 1299 (1387)
T ss_pred             eecCCceEE--eecccCCccccceeecccCC-----cccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeee
Confidence            567999998  8877543   4566677776     5  9999999988 5799999999999999986322  122223


Q ss_pred             C---CCceeEEEEccCCCEEEEEEc
Q 041215           74 C---GQPIPCSTFNTDGSIFAYSVC   95 (136)
Q Consensus        74 h---~~~v~~v~~sp~~~~l~s~~~   95 (136)
                      |   ++.++++..+++..++|+|+.
T Consensus      1300 ~~~yGs~lTal~VH~hapiiAsGs~ 1324 (1387)
T KOG1517|consen 1300 HWEYGSALTALTVHEHAPIIASGSA 1324 (1387)
T ss_pred             ccccCccceeeeeccCCCeeeecCc
Confidence            3   236899999999999999875

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=97.44  E-value=0.00026  Score=57.90  Aligned_cols=88  Identities=23%  Similarity=0.240  Sum_probs=63.1

Q ss_pred             ceeceEEEEEeeCCCCcceeE--EEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCcc--e----------
Q 041215            3 SIEGRVGVHHLDDSQQSKNFT--FKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQ--R----------   67 (136)
Q Consensus         3 s~dG~v~i~~~d~~~~~~~~~--l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~--~----------   67 (136)
                      |-|.+++.  ||.........  +.+|..     .|..++|+|.. ..|++|+.||.|.|||+.-..  .          
T Consensus       119 sGDsT~r~--Wdvk~s~l~G~~~~~GH~~-----SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~  191 (720)
T KOG0321|consen  119 SGDSTIRP--WDVKTSRLVGGRLNLGHTG-----SVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYG  191 (720)
T ss_pred             cCCceeee--eeeccceeecceeeccccc-----ccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhc
Confidence            44556655  88777666555  788999     99999999988 689999999999999975211  0          


Q ss_pred             ---------------eeecccCCCceeE---EEEccCCCEEEEEEccc
Q 041215           68 ---------------LKAMSRCGQPIPC---STFNTDGSIFAYSVCYD   97 (136)
Q Consensus        68 ---------------~~~~~~h~~~v~~---v~~sp~~~~l~s~~~dd   97 (136)
                                     +.....+...|.+   +-+..|...||+++..|
T Consensus       192 ~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D  239 (720)
T KOG0321|consen  192 RHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAAD  239 (720)
T ss_pred             cccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCC
Confidence                           0001124455666   77788999999988833

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.43  E-value=0.0028  Score=48.24  Aligned_cols=58  Identities=14%  Similarity=0.315  Sum_probs=46.4

Q ss_pred             Cceece-EEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCC
Q 041215            2 GSIEGR-VGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDS   64 (136)
Q Consensus         2 gs~dG~-v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~   64 (136)
                      ||.-|+ |+|  ||..++..+..+.-   +...+.|-+++|+|++.+|+.+|+-|+|++|.+..
T Consensus       199 aStkGTLIRI--Fdt~~g~~l~E~RR---G~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  199 ASTKGTLIRI--FDTEDGTLLQELRR---GVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             eccCcEEEEE--EEcCCCcEeeeeec---CCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence            566777 555  99998888887652   23334799999999999999999999999998764

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=97.39  E-value=0.0021  Score=49.42  Aligned_cols=62  Identities=18%  Similarity=0.301  Sum_probs=47.2

Q ss_pred             ceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEccc
Q 041215           35 SVNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYD   97 (136)
Q Consensus        35 ~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd   97 (136)
                      .+..++|+|+| +.|.+...+-.|.+|.+.+..... +.-....+..++|+|+|++.+.++.-|
T Consensus        93 gls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRrD  155 (447)
T KOG4497|consen   93 GLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRRD  155 (447)
T ss_pred             cceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeeccc
Confidence            78999999999 667777778899999998866533 222234568899999999887765433

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=97.38  E-value=0.00069  Score=59.11  Aligned_cols=77  Identities=19%  Similarity=0.209  Sum_probs=59.9

Q ss_pred             CcceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCc-------ceeeecccCCCceeEEEEccCCCE
Q 041215           18 QSKNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDSK-------QRLKAMSRCGQPIPCSTFNTDGSI   89 (136)
Q Consensus        18 ~~~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~-------~~~~~~~~h~~~v~~v~~sp~~~~   89 (136)
                      |....++..|..     .+..++.++.. .++++|+.||+|++|+....       ....++......+.++.+.+.+..
T Consensus      1038 G~lVAhL~Ehs~-----~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1038 GILVAHLHEHSS-----AVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred             ceEeehhhhccc-----cccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence            455666777888     88888887666 89999999999999997631       223345446789999999999999


Q ss_pred             EEEEEccccc
Q 041215           90 FAYSVCYDWS   99 (136)
Q Consensus        90 l~s~~~dd~~   99 (136)
                      +|.++.|+.-
T Consensus      1113 ~Av~t~DG~v 1122 (1431)
T KOG1240|consen 1113 FAVSTKDGSV 1122 (1431)
T ss_pred             EEEEcCCCeE
Confidence            9998777743

>PRK03629 tolB translocation protein TolB; Provisional

Probab=97.37  E-value=0.0021  Score=51.04  Aligned_cols=85  Identities=11%  Similarity=0.129  Sum_probs=54.0

Q ss_pred             eceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcC-CCcEEE--EeCCCcceeeecccCCCceeEE
Q 041215            5 EGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGS-DGAFNF--WDKDSKQRLKAMSRCGQPIPCS   81 (136)
Q Consensus         5 dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~-dg~v~v--wd~~~~~~~~~~~~h~~~v~~v   81 (136)
                      +|...|+.+|..++.... +..+..     .+....|+|+|+.|+..+. ++...+  +|+.++.. ..+........+.
T Consensus       264 ~g~~~I~~~d~~tg~~~~-lt~~~~-----~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~  336 (429)
T PRK03629        264 TGSLNLYVMDLASGQIRQ-VTDGRS-----NNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDA  336 (429)
T ss_pred             CCCcEEEEEECCCCCEEE-ccCCCC-----CcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCE
Confidence            455556778876655433 233334     5678999999987765554 444444  46665543 3444444556788


Q ss_pred             EEccCCCEEEEEEcc
Q 041215           82 TFNTDGSIFAYSVCY   96 (136)
Q Consensus        82 ~~sp~~~~l~s~~~d   96 (136)
                      .|+|+|++++..+.+
T Consensus       337 ~~SpDG~~Ia~~~~~  351 (429)
T PRK03629        337 DVSSDGKFMVMVSSN  351 (429)
T ss_pred             EECCCCCEEEEEEcc
Confidence            999999998876554

>PRK05137 tolB translocation protein TolB; Provisional

Probab=97.36  E-value=0.002  Score=51.11  Aligned_cols=80  Identities=14%  Similarity=0.104  Sum_probs=54.5

Q ss_pred             EEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEE-EEEcCCCc--EEEEeCCCcceeeecccCCCceeEEEEcc
Q 041215            9 GVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTF-ATAGSDGA--FNFWDKDSKQRLKAMSRCGQPIPCSTFNT   85 (136)
Q Consensus         9 ~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l-~s~~~dg~--v~vwd~~~~~~~~~~~~h~~~v~~v~~sp   85 (136)
                      .++.+|..++.. ..+..+.+     .+...+|+|+|..| ++.+.++.  |.+||+.++.. ..+..+........|+|
T Consensus       227 ~i~~~dl~~g~~-~~l~~~~g-----~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~sp  299 (435)
T PRK05137        227 RVYLLDLETGQR-ELVGNFPG-----MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSP  299 (435)
T ss_pred             EEEEEECCCCcE-EEeecCCC-----cccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcC
Confidence            455566655543 23344555     66788999999755 56666654  77778887654 45656666677899999


Q ss_pred             CCCEEEEEEc
Q 041215           86 DGSIFAYSVC   95 (136)
Q Consensus        86 ~~~~l~s~~~   95 (136)
                      +++.++..+.
T Consensus       300 DG~~i~f~s~  309 (435)
T PRK05137        300 DGSQIVFESD  309 (435)
T ss_pred             CCCEEEEEEC
Confidence            9998887654

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=97.33  E-value=7.9e-05  Score=62.65  Aligned_cols=70  Identities=14%  Similarity=0.191  Sum_probs=62.6

Q ss_pred             eEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEcc
Q 041215           22 FTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCY   96 (136)
Q Consensus        22 ~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d   96 (136)
                      .-+.+|.+     +|-|+.|...|++++++++|..++||.++++.++....+|.+.++.++.+-...++++++.|
T Consensus       184 krLlgH~n-----aVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D  253 (1113)
T KOG0644|consen  184 KRLLGHRN-----AVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASND  253 (1113)
T ss_pred             HHHHhhhh-----heeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccC
Confidence            34567777     99999999999999999999999999999999999999999999999999888888866555

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=97.32  E-value=0.0032  Score=50.47  Aligned_cols=89  Identities=13%  Similarity=0.124  Sum_probs=66.8

Q ss_pred             CCceec-eEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCcee
Q 041215            1 VGSIEG-RVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIP   79 (136)
Q Consensus         1 vgs~dG-~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~   79 (136)
                      +|..|| .+-|  ||..+++...... .-+     .|.++..+|+|.+++.+.....+-+.|+.++...---...-+-|.
T Consensus       376 igt~dgD~l~i--yd~~~~e~kr~e~-~lg-----~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lIt  447 (668)
T COG4946         376 IGTNDGDKLGI--YDKDGGEVKRIEK-DLG-----NIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLIT  447 (668)
T ss_pred             EeccCCceEEE--EecCCceEEEeeC-Ccc-----ceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeE
Confidence            356777 4555  7777666555533 445     899999999999999998888899999999865332233458899


Q ss_pred             EEEEccCCCEEEEEEccc
Q 041215           80 CSTFNTDGSIFAYSVCYD   97 (136)
Q Consensus        80 ~v~~sp~~~~l~s~~~dd   97 (136)
                      ...|+|+++++|.+-.+.
T Consensus       448 df~~~~nsr~iAYafP~g  465 (668)
T COG4946         448 DFDWHPNSRWIAYAFPEG  465 (668)
T ss_pred             EEEEcCCceeEEEecCcc
Confidence            999999999999874433

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=97.30  E-value=0.0014  Score=52.92  Aligned_cols=59  Identities=19%  Similarity=0.376  Sum_probs=48.7

Q ss_pred             ceeEEEEeCCCCEEEEEcCC---CcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEc
Q 041215           35 SVNSLNFHPIHHTFATAGSD---GAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVC   95 (136)
Q Consensus        35 ~v~~l~~~p~~~~l~s~~~d---g~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~   95 (136)
                      +=+++-|+|.|++++-++.+   |.+.+||+.+.+.+..+.....  +-..|+|||++++|+..
T Consensus       313 pRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~PdGe~flTATT  374 (566)
T KOG2315|consen  313 PRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT--TVFEWSPDGEYFLTATT  374 (566)
T ss_pred             CccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCc--eEEEEcCCCcEEEEEec
Confidence            55789999999998888875   7899999999888877755433  55689999999999865

>PRK04922 tolB translocation protein TolB; Provisional

Probab=97.30  E-value=0.0022  Score=50.91  Aligned_cols=78  Identities=17%  Similarity=0.150  Sum_probs=53.6

Q ss_pred             EEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCC---CcEEEEeCCCcceeeecccCCCceeEEEEcc
Q 041215            9 GVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSD---GAFNFWDKDSKQRLKAMSRCGQPIPCSTFNT   85 (136)
Q Consensus         9 ~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~d---g~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp   85 (136)
                      .|+.+|.. +.....+..+..     .+...+|+|+++.|+..+..   ..|.+||+.++... .+....+...+..|+|
T Consensus       185 ~l~i~D~~-g~~~~~lt~~~~-----~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~Sp  257 (433)
T PRK04922        185 ALQVADSD-GYNPQTILRSAE-----PILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSP  257 (433)
T ss_pred             EEEEECCC-CCCceEeecCCC-----ccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECC
Confidence            45667764 333444555666     88899999999877776643   46999999877643 3333444556789999


Q ss_pred             CCCEEEEE
Q 041215           86 DGSIFAYS   93 (136)
Q Consensus        86 ~~~~l~s~   93 (136)
                      +|+.++..
T Consensus       258 DG~~l~~~  265 (433)
T PRK04922        258 DGRRLALT  265 (433)
T ss_pred             CCCEEEEE
Confidence            99877643

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=97.30  E-value=0.0013  Score=53.57  Aligned_cols=88  Identities=19%  Similarity=0.255  Sum_probs=64.3

Q ss_pred             eeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecc------cCC-----CceeEE
Q 041215           13 LDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMS------RCG-----QPIPCS   81 (136)
Q Consensus        13 ~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~------~h~-----~~v~~v   81 (136)
                      ++...|.-+..|..-.+     .+++|..++-..+|++|+.+|.|.+||..+...+..+.      .|.     ..|+++
T Consensus       160 lNLEqGrfL~P~~~~~~-----~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal  234 (703)
T KOG2321|consen  160 LNLEQGRFLNPFETDSG-----ELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTAL  234 (703)
T ss_pred             EEccccccccccccccc-----cceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEE
Confidence            34444444445554445     89999999999999999999999999988765544332      222     348999


Q ss_pred             EEccCCCEEEEEEccccccccccc
Q 041215           82 TFNTDGSIFAYSVCYDWSKGAENH  105 (136)
Q Consensus        82 ~~sp~~~~l~s~~~dd~~~~~~~~  105 (136)
                      .|+.+|-.++.|.+.+....++..
T Consensus       235 ~F~d~gL~~aVGts~G~v~iyDLR  258 (703)
T KOG2321|consen  235 KFRDDGLHVAVGTSTGSVLIYDLR  258 (703)
T ss_pred             EecCCceeEEeeccCCcEEEEEcc
Confidence            999999999999888866555443

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.28  E-value=0.00044  Score=53.65  Aligned_cols=73  Identities=19%  Similarity=0.258  Sum_probs=57.0

Q ss_pred             ceEEEEEeeCCCCcceeE-EEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEc
Q 041215            6 GRVGVHHLDDSQQSKNFT-FKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFN   84 (136)
Q Consensus         6 G~v~i~~~d~~~~~~~~~-l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~s   84 (136)
                      |.+..  ||.+.++.... |++..+     .|..+-.||.+.+|++++-|..|+|+|+++...++.. -....+++|-+.
T Consensus       269 g~l~~--FD~r~~kl~g~~~kg~tG-----sirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kv-YvKs~lt~il~~  340 (412)
T KOG3881|consen  269 GQLAK--FDLRGGKLLGCGLKGITG-----SIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKV-YVKSRLTFILLR  340 (412)
T ss_pred             chhhe--ecccCceeeccccCCccC-----CcceEEEcCCCceEEeeccceeEEEeecccchhhhhh-hhhccccEEEec
Confidence            44444  88888877766 888889     9999999999999999999999999999996665543 234566777775


Q ss_pred             cC
Q 041215           85 TD   86 (136)
Q Consensus        85 p~   86 (136)
                      ++
T Consensus       341 ~~  342 (412)
T KOG3881|consen  341 DD  342 (412)
T ss_pred             CC
Confidence            43

>PRK02889 tolB translocation protein TolB; Provisional

Probab=97.28  E-value=0.0031  Score=50.04  Aligned_cols=80  Identities=16%  Similarity=0.199  Sum_probs=51.8

Q ss_pred             EEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEE-EEcCCCcEEEEe--CCCcceeeecccCCCceeEEEEcc
Q 041215            9 GVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFA-TAGSDGAFNFWD--KDSKQRLKAMSRCGQPIPCSTFNT   85 (136)
Q Consensus         9 ~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~-s~~~dg~v~vwd--~~~~~~~~~~~~h~~~v~~v~~sp   85 (136)
                      .||.+|..++.... +....+     .....+|+|+|..|+ +.+.++...+|.  +..+. ...+..+........|+|
T Consensus       221 ~I~~~dl~~g~~~~-l~~~~g-----~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSp  293 (427)
T PRK02889        221 VVYVHDLATGRRRV-VANFKG-----SNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSP  293 (427)
T ss_pred             EEEEEECCCCCEEE-eecCCC-----CccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcC
Confidence            35667766554432 233334     556889999997664 667777766665  44443 455555555667789999


Q ss_pred             CCCEEEEEEc
Q 041215           86 DGSIFAYSVC   95 (136)
Q Consensus        86 ~~~~l~s~~~   95 (136)
                      +|+.++..+.
T Consensus       294 DG~~l~f~s~  303 (427)
T PRK02889        294 DGRSIYFTSD  303 (427)
T ss_pred             CCCEEEEEec
Confidence            9998876543

>PRK03629 tolB translocation protein TolB; Provisional

Probab=97.19  E-value=0.0048  Score=49.01  Aligned_cols=61  Identities=20%  Similarity=0.140  Sum_probs=43.9

Q ss_pred             ceeEEEEeCCCCEEEEE-cCCC--cEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEcc
Q 041215           35 SVNSLNFHPIHHTFATA-GSDG--AFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCY   96 (136)
Q Consensus        35 ~v~~l~~~p~~~~l~s~-~~dg--~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d   96 (136)
                      .+....|+|+|..|+.. +.++  .|.+||+.++... .+..+...+....|+|+++.++..+..
T Consensus       244 ~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~  307 (429)
T PRK03629        244 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAYTSDQ  307 (429)
T ss_pred             CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE-EccCCCCCcCceEECCCCCEEEEEeCC
Confidence            44568999999766643 4454  4888999887654 444445567889999999988776653

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=97.15  E-value=0.0091  Score=45.33  Aligned_cols=85  Identities=6%  Similarity=-0.016  Sum_probs=54.7

Q ss_pred             ceeceEEEEEeeCCCCc--ceeEEEeeeCCCCccceeEEEEeCCCCEEEEEc-CCCcEEEEeCC-Ccce--eeecccCCC
Q 041215            3 SIEGRVGVHHLDDSQQS--KNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAG-SDGAFNFWDKD-SKQR--LKAMSRCGQ   76 (136)
Q Consensus         3 s~dG~v~i~~~d~~~~~--~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~-~dg~v~vwd~~-~~~~--~~~~~~h~~   76 (136)
                      ..++.|.+|.++. .+.  .+..+. ..+     ....++++|++++|+.++ .++.|.+|++. ++..  +.... ..+
T Consensus         9 ~~~~~I~~~~~~~-~g~l~~~~~~~-~~~-----~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~   80 (330)
T PRK11028          9 PESQQIHVWNLNH-EGALTLLQVVD-VPG-----QVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPG   80 (330)
T ss_pred             CCCCCEEEEEECC-CCceeeeeEEe-cCC-----CCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCC
Confidence            4578888855532 232  334443 234     677899999998776654 56789999986 3332  22221 234


Q ss_pred             ceeEEEEccCCCEEEEEEc
Q 041215           77 PIPCSTFNTDGSIFAYSVC   95 (136)
Q Consensus        77 ~v~~v~~sp~~~~l~s~~~   95 (136)
                      ....++|+|+++++.++..
T Consensus        81 ~p~~i~~~~~g~~l~v~~~   99 (330)
T PRK11028         81 SPTHISTDHQGRFLFSASY   99 (330)
T ss_pred             CceEEEECCCCCEEEEEEc
Confidence            5678999999998887653

>PRK04922 tolB translocation protein TolB; Provisional

Probab=97.14  E-value=0.0048  Score=48.96  Aligned_cols=85  Identities=11%  Similarity=0.063  Sum_probs=52.0

Q ss_pred             eeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEc-CCCc--EEEEeCCCcceeeecccCCCceeE
Q 041215            4 IEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAG-SDGA--FNFWDKDSKQRLKAMSRCGQPIPC   80 (136)
Q Consensus         4 ~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~-~dg~--v~vwd~~~~~~~~~~~~h~~~v~~   80 (136)
                      .+|.-.|+.+|..++.. ..+..+..     .....+|+|+|+.|+..+ .++.  |.++++.++.. ..+..+......
T Consensus       268 ~~g~~~Iy~~d~~~g~~-~~lt~~~~-----~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~-~~lt~~g~~~~~  340 (433)
T PRK04922        268 RDGNPEIYVMDLGSRQL-TRLTNHFG-----IDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA-ERLTFQGNYNAR  340 (433)
T ss_pred             CCCCceEEEEECCCCCe-EECccCCC-----CccceEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEeecCCCCccC
Confidence            34444566677765543 33333433     446789999998666554 4454  66667666543 333333344557


Q ss_pred             EEEccCCCEEEEEEc
Q 041215           81 STFNTDGSIFAYSVC   95 (136)
Q Consensus        81 v~~sp~~~~l~s~~~   95 (136)
                      .+|+|+|+.++....
T Consensus       341 ~~~SpDG~~Ia~~~~  355 (433)
T PRK04922        341 ASVSPDGKKIAMVHG  355 (433)
T ss_pred             EEECCCCCEEEEEEC
Confidence            899999998887654

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=97.14  E-value=0.006  Score=47.61  Aligned_cols=80  Identities=20%  Similarity=0.172  Sum_probs=53.4

Q ss_pred             eEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCC---CcEEEEeCCCcceeeecccCCCceeEEEE
Q 041215            7 RVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSD---GAFNFWDKDSKQRLKAMSRCGQPIPCSTF   83 (136)
Q Consensus         7 ~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~d---g~v~vwd~~~~~~~~~~~~h~~~v~~v~~   83 (136)
                      .-.|+.+|.... ....+..+..     .+...+|+|+++.|+....+   ..|.+||+.++... .+..+...+.+++|
T Consensus       169 ~~~l~~~d~~g~-~~~~l~~~~~-----~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~-~~~~~~~~~~~~~~  241 (417)
T TIGR02800       169 RYELQVADYDGA-NPQTITRSRE-----PILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE-KVASFPGMNGAPAF  241 (417)
T ss_pred             cceEEEEcCCCC-CCEEeecCCC-----ceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE-EeecCCCCccceEE
Confidence            334555665433 3344444555     68888999999887766543   46999999887543 33344556678999


Q ss_pred             ccCCCEEEEE
Q 041215           84 NTDGSIFAYS   93 (136)
Q Consensus        84 sp~~~~l~s~   93 (136)
                      +|+++.|+..
T Consensus       242 spDg~~l~~~  251 (417)
T TIGR02800       242 SPDGSKLAVS  251 (417)
T ss_pred             CCCCCEEEEE
Confidence            9999877654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=97.11  E-value=0.0015  Score=50.71  Aligned_cols=74  Identities=7%  Similarity=-0.058  Sum_probs=59.1

Q ss_pred             EeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeec-ccCCCceeEEEEccCCCEEEEEEccccccccc
Q 041215           25 KCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAM-SRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAE  103 (136)
Q Consensus        25 ~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~-~~h~~~v~~v~~sp~~~~l~s~~~dd~~~~~~  103 (136)
                      -+|-+     -+..++|+||++++.++..|..|++-.+.....+..| -+|..-|..++.-++.. |++|++|+....-+
T Consensus       148 lGhvS-----ml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~-LlS~sGD~tlr~Wd  221 (390)
T KOG3914|consen  148 LGHVS-----MLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYL-LLSGSGDKTLRLWD  221 (390)
T ss_pred             hhhhh-----hhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCce-eeecCCCCcEEEEe
Confidence            35766     8999999999999999999999999887765555544 46999999999987765 78888888654443


Q ss_pred             c
Q 041215          104 N  104 (136)
Q Consensus       104 ~  104 (136)
                      +
T Consensus       222 ~  222 (390)
T KOG3914|consen  222 I  222 (390)
T ss_pred             c
Confidence            3

>PRK00178 tolB translocation protein TolB; Provisional

Probab=97.11  E-value=0.01  Score=46.87  Aligned_cols=78  Identities=15%  Similarity=0.172  Sum_probs=51.9

Q ss_pred             EEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCC---CcEEEEeCCCcceeeecccCCCceeEEEEcc
Q 041215            9 GVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSD---GAFNFWDKDSKQRLKAMSRCGQPIPCSTFNT   85 (136)
Q Consensus         9 ~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~d---g~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp   85 (136)
                      .++..|..... ...+..+..     .+...+|+|+|+.|+..+.+   ..|.+|++.++... .+....+.+...+|+|
T Consensus       180 ~l~~~d~~g~~-~~~l~~~~~-----~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~-~l~~~~g~~~~~~~Sp  252 (430)
T PRK00178        180 TLQRSDYDGAR-AVTLLQSRE-----PILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE-QITNFEGLNGAPAWSP  252 (430)
T ss_pred             EEEEECCCCCC-ceEEecCCC-----ceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEE-EccCCCCCcCCeEECC
Confidence            45556655433 344445566     78899999999877665533   35888999887643 3333334556789999


Q ss_pred             CCCEEEEE
Q 041215           86 DGSIFAYS   93 (136)
Q Consensus        86 ~~~~l~s~   93 (136)
                      +|+.++..
T Consensus       253 DG~~la~~  260 (430)
T PRK00178        253 DGSKLAFV  260 (430)
T ss_pred             CCCEEEEE
Confidence            99987754

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.10  E-value=0.0014  Score=56.72  Aligned_cols=91  Identities=15%  Similarity=0.248  Sum_probs=64.6

Q ss_pred             CCceeceEEEEEeeCCCC--cceeEEEeee---CCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeeccc--
Q 041215            1 VGSIEGRVGVHHLDDSQQ--SKNFTFKCHR---DGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSR--   73 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~--~~~~~l~~h~---~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~--   73 (136)
                      .||.||.|.+  ||.+..  ....+...|.   +     ..+++..|++...+++|+. +.|.||++.-. .+..+..  
T Consensus      1274 Sgs~~G~I~~--~DlR~~~~e~~~~iv~~~~yGs-----~lTal~VH~hapiiAsGs~-q~ikIy~~~G~-~l~~~k~n~ 1344 (1387)
T KOG1517|consen 1274 SGSQDGDIQL--LDLRMSSKETFLTIVAHWEYGS-----ALTALTVHEHAPIIASGSA-QLIKIYSLSGE-QLNIIKYNP 1344 (1387)
T ss_pred             eeccCCeEEE--EecccCcccccceeeeccccCc-----cceeeeeccCCCeeeecCc-ceEEEEecChh-hhcccccCc
Confidence            3789999988  777653  2223333343   2     4899999999999999998 89999998632 2222211  


Q ss_pred             -----CCCceeEEEEccCCCEEEEEEcccccc
Q 041215           74 -----CGQPIPCSTFNTDGSIFAYSVCYDWSK  100 (136)
Q Consensus        74 -----h~~~v~~v~~sp~~~~l~s~~~dd~~~  100 (136)
                           -.+.+.|++|+|..-++|.|..|.+..
T Consensus      1345 ~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~ 1376 (1387)
T KOG1517|consen 1345 GFMGQRIGSVSCLAFHPHRLLLAAGSADSTVS 1376 (1387)
T ss_pred             ccccCcCCCcceeeecchhHhhhhccCCceEE
Confidence                 236779999999999999886666553

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=97.09  E-value=0.012  Score=51.71  Aligned_cols=115  Identities=16%  Similarity=0.136  Sum_probs=75.0

Q ss_pred             CCceeceEEEEEeeCCCCc-----ceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCc----------
Q 041215            1 VGSIEGRVGVHHLDDSQQS-----KNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSK----------   65 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~-----~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~----------   65 (136)
                      .||.||+|++|....-.+.     ..-++.-..+     ++.++...+.++.++.++.||.|++.++...          
T Consensus      1066 sgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~s-----r~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ 1140 (1431)
T KOG1240|consen 1066 SGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGS-----RVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQV 1140 (1431)
T ss_pred             EecCCceEEEeeehhhhcCcceeeeeEEEeccCC-----ceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeee
Confidence            4899999999665432122     2223332345     7888999999999999999999999876431          


Q ss_pred             ---------cee--eecc----------------------------------cCCCceeEEEEccCCCEEEEEEcccccc
Q 041215           66 ---------QRL--KAMS----------------------------------RCGQPIPCSTFNTDGSIFAYSVCYDWSK  100 (136)
Q Consensus        66 ---------~~~--~~~~----------------------------------~h~~~v~~v~~sp~~~~l~s~~~dd~~~  100 (136)
                               ..+  ..+.                                  .-.+-|++++.+|.+.++++|.+-+|..
T Consensus      1141 ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~ 1220 (1431)
T KOG1240|consen 1141 RIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLV 1220 (1431)
T ss_pred             ecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEE
Confidence                     000  0000                                  1247889999999999999997766422


Q ss_pred             ---------cccccCCCCCc-ceEEEEcCC
Q 041215          101 ---------GAENHNPATAK-TYIYLHLPQ  120 (136)
Q Consensus       101 ---------~~~~~~~~~~~-~~~~~~~~~  120 (136)
                               ...|.+|.... .++.++|..
T Consensus      1221 lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~ 1250 (1431)
T KOG1240|consen 1221 LWDLRFRVPILSWEHPARAPIRHVWLCPTY 1250 (1431)
T ss_pred             EEEeecCceeecccCcccCCcceEEeeccC
Confidence                     23677777333 556666654

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=97.08  E-value=0.0011  Score=52.00  Aligned_cols=71  Identities=17%  Similarity=0.260  Sum_probs=56.0

Q ss_pred             EEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCc------ceeeeccc-CCCceeEEEEccCCCEEEEEEcc
Q 041215           24 FKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSK------QRLKAMSR-CGQPIPCSTFNTDGSIFAYSVCY   96 (136)
Q Consensus        24 l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~------~~~~~~~~-h~~~v~~v~~sp~~~~l~s~~~d   96 (136)
                      +.+|.+     -|+++-|+-++++|++|+.|..+++|++...      +.+..... |...|.|++|+...+.+.+|..|
T Consensus        52 ~~~H~G-----CiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~  126 (609)
T KOG4227|consen   52 VREHTG-----CINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERW  126 (609)
T ss_pred             hhhhcc-----ccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCc
Confidence            345667     7899999999999999999999999998642      33443333 45899999999999999988776


Q ss_pred             ccc
Q 041215           97 DWS   99 (136)
Q Consensus        97 d~~   99 (136)
                      ...
T Consensus       127 ~~V  129 (609)
T KOG4227|consen  127 GTV  129 (609)
T ss_pred             cee
Confidence            653

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.06  E-value=0.003  Score=51.27  Aligned_cols=55  Identities=15%  Similarity=0.262  Sum_probs=43.0

Q ss_pred             CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCC
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDS   64 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~   64 (136)
                      +|..||.|.+  ||...+....+  ...-     .++.++|||+|..++.|+..|.+.+||+.-
T Consensus       276 lGC~DgSiiL--yD~~~~~t~~~--ka~~-----~P~~iaWHp~gai~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  276 LGCEDGSIIL--YDTTRGVTLLA--KAEF-----IPTLIAWHPDGAIFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             EEecCCeEEE--EEcCCCeeeee--eecc-----cceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence            3788999988  88765533332  2333     678999999999999999999999999753

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=97.05  E-value=0.0035  Score=53.71  Aligned_cols=92  Identities=16%  Similarity=0.044  Sum_probs=70.5

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCC-CceeE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCG-QPIPC   80 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~-~~v~~   80 (136)
                      .|.|-++++|.+|...... -+.-+|..     +|+.+.|+|+  .+++++.|.+.++|+... ..+..+.+|. .-+..
T Consensus       193 ~SdDRsiRlW~i~s~~~~~-~~~fgHsa-----Rvw~~~~~~n--~i~t~gedctcrvW~~~~-~~l~~y~~h~g~~iw~  263 (967)
T KOG0974|consen  193 VSDDRSIRLWPIDSREVLG-CTGFGHSA-----RVWACCFLPN--RIITVGEDCTCRVWGVNG-TQLEVYDEHSGKGIWK  263 (967)
T ss_pred             EecCcceeeeecccccccC-cccccccc-----eeEEEEeccc--eeEEeccceEEEEEeccc-ceehhhhhhhhcceeE
Confidence            4778888886665543222 24446888     9999999998  999999999999997654 4455888884 77899


Q ss_pred             EEEccCCCEEEEEEcccccccc
Q 041215           81 STFNTDGSIFAYSVCYDWSKGA  102 (136)
Q Consensus        81 v~~sp~~~~l~s~~~dd~~~~~  102 (136)
                      ++..+...+++|++.|.-.+..
T Consensus       264 ~~~~~~~~~~vT~g~Ds~lk~~  285 (967)
T KOG0974|consen  264 IAVPIGVIIKVTGGNDSTLKLW  285 (967)
T ss_pred             EEEcCCceEEEeeccCcchhhh
Confidence            9999999999988777755433

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=97.02  E-value=0.0044  Score=48.69  Aligned_cols=91  Identities=13%  Similarity=0.079  Sum_probs=70.4

Q ss_pred             CceeceEEEEEeeC----CCCcceeEEE-eeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccC--
Q 041215            2 GSIEGRVGVHHLDD----SQQSKNFTFK-CHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRC--   74 (136)
Q Consensus         2 gs~dG~v~i~~~d~----~~~~~~~~l~-~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h--   74 (136)
                      |..|-.+++|..|.    ++.+++.... .|++     .|.|+.|....++|++|+.+++|.+.|+++.+.+..+...  
T Consensus        74 GGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~S-----NIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~  148 (609)
T KOG4227|consen   74 GGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRS-----NIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNN  148 (609)
T ss_pred             cCCcceeeeechHHHHhhcCCCCceeccCcccc-----ceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCc
Confidence            56677788877764    3445554432 3567     9999999988899999999999999999998888777432  


Q ss_pred             CCceeEEEEccCCCEEEEEEccc
Q 041215           75 GQPIPCSTFNTDGSIFAYSVCYD   97 (136)
Q Consensus        75 ~~~v~~v~~sp~~~~l~s~~~dd   97 (136)
                      .+.|..+..+|....|++.+.+.
T Consensus       149 ~~~VY~m~~~P~DN~~~~~t~~~  171 (609)
T KOG4227|consen  149 RGDVYHMDQHPTDNTLIVVTRAK  171 (609)
T ss_pred             ccceeecccCCCCceEEEEecCc
Confidence            36999999999988888765544

>PRK01029 tolB translocation protein TolB; Provisional

Probab=97.02  E-value=0.0084  Score=47.71  Aligned_cols=60  Identities=10%  Similarity=0.162  Sum_probs=42.4

Q ss_pred             ceeEEEEeCCCCEEEEEcC-C--CcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEc
Q 041215           35 SVNSLNFHPIHHTFATAGS-D--GAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVC   95 (136)
Q Consensus        35 ~v~~l~~~p~~~~l~s~~~-d--g~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~   95 (136)
                      .+....|+|+|+.|+..+. +  ..|.+||+.++... .+......+....|+|+++.|+....
T Consensus       328 ~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~-~Lt~~~~~~~~p~wSpDG~~L~f~~~  390 (428)
T PRK01029        328 NSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY-QLTTSPENKESPSWAIDSLHLVYSAG  390 (428)
T ss_pred             CccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE-EccCCCCCccceEECCCCCEEEEEEC
Confidence            5667899999987665543 3  35889999887653 34333345678999999998775443

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=96.95  E-value=0.015  Score=44.18  Aligned_cols=90  Identities=8%  Similarity=0.056  Sum_probs=52.4

Q ss_pred             eceEEEEEeeCCCCc--ceeEEEeeeC--CCCccceeEEEEeCCCCEEEEEcC-CCcEEEEeCCCcceeeecccC---CC
Q 041215            5 EGRVGVHHLDDSQQS--KNFTFKCHRD--GSEIYSVNSLNFHPIHHTFATAGS-DGAFNFWDKDSKQRLKAMSRC---GQ   76 (136)
Q Consensus         5 dG~v~i~~~d~~~~~--~~~~l~~h~~--~~~~~~v~~l~~~p~~~~l~s~~~-dg~v~vwd~~~~~~~~~~~~h---~~   76 (136)
                      ++.|.+|.++..++.  ....+.....  .... ....+.++|++++++++.. ++.|.+|++........+.++   ..
T Consensus       196 ~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~  274 (330)
T PRK11028        196 NSSVDVWQLKDPHGEIECVQTLDMMPADFSDTR-WAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTET  274 (330)
T ss_pred             CCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCc-cceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccc
Confidence            577777666543332  2222222111  0001 2236889999998888754 678999998643211111121   23


Q ss_pred             ceeEEEEccCCCEEEEEEc
Q 041215           77 PIPCSTFNTDGSIFAYSVC   95 (136)
Q Consensus        77 ~v~~v~~sp~~~~l~s~~~   95 (136)
                      ....++|+|++++++++..
T Consensus       275 ~p~~~~~~~dg~~l~va~~  293 (330)
T PRK11028        275 QPRGFNIDHSGKYLIAAGQ  293 (330)
T ss_pred             cCCceEECCCCCEEEEEEc
Confidence            4568999999998887654

>PRK04792 tolB translocation protein TolB; Provisional

Probab=96.95  E-value=0.01  Score=47.40  Aligned_cols=83  Identities=14%  Similarity=0.160  Sum_probs=51.7

Q ss_pred             ceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEE-EEcCCCc--EEEEeCCCcceeeecccCCCceeEEE
Q 041215            6 GRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFA-TAGSDGA--FNFWDKDSKQRLKAMSRCGQPIPCST   82 (136)
Q Consensus         6 G~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~-s~~~dg~--v~vwd~~~~~~~~~~~~h~~~v~~v~   82 (136)
                      |...||.+|..+++... +....+     ......|+|+|..|+ +.+.++.  |.++|+.++.. ..+..+.......+
T Consensus       240 g~~~L~~~dl~tg~~~~-lt~~~g-----~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~  312 (448)
T PRK04792        240 RKAEIFVQDIYTQVREK-VTSFPG-----INGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPS  312 (448)
T ss_pred             CCcEEEEEECCCCCeEE-ecCCCC-----CcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceE
Confidence            34445566665544321 222222     334689999997654 4555664  77778877654 44555555667889


Q ss_pred             EccCCCEEEEEEc
Q 041215           83 FNTDGSIFAYSVC   95 (136)
Q Consensus        83 ~sp~~~~l~s~~~   95 (136)
                      |+|+++.++..+.
T Consensus       313 wSpDG~~I~f~s~  325 (448)
T PRK04792        313 WHPDGKSLIFTSE  325 (448)
T ss_pred             ECCCCCEEEEEEC
Confidence            9999998776553

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=96.90  E-value=0.016  Score=45.37  Aligned_cols=87  Identities=14%  Similarity=0.159  Sum_probs=58.2

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEc-CCCcEEEEeCCCcceeeecccC------
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAG-SDGAFNFWDKDSKQRLKAMSRC------   74 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~-~dg~v~vwd~~~~~~~~~~~~h------   74 (136)
                      ++.||.|.+  +|..+.+....++.- .     ...+++++++|++++.+. ..+.+.++|.++.+.+..+...      
T Consensus        54 ~~rdg~vsv--iD~~~~~~v~~i~~G-~-----~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~  125 (369)
T PF02239_consen   54 ANRDGTVSV--IDLATGKVVATIKVG-G-----NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDG  125 (369)
T ss_dssp             EETTSEEEE--EETTSSSEEEEEE-S-S-----EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTT
T ss_pred             EcCCCeEEE--EECCcccEEEEEecC-C-----CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccc
Confidence            456888877  899988888887643 2     457899999998877665 5788999999999888877543      


Q ss_pred             -CCceeEEEEccCCCEEEEEEcc
Q 041215           75 -GQPIPCSTFNTDGSIFAYSVCY   96 (136)
Q Consensus        75 -~~~v~~v~~sp~~~~l~s~~~d   96 (136)
                       ...+..|-.+|....++.+..+
T Consensus       126 ~~~Rv~aIv~s~~~~~fVv~lkd  148 (369)
T PF02239_consen  126 PESRVAAIVASPGRPEFVVNLKD  148 (369)
T ss_dssp             S---EEEEEE-SSSSEEEEEETT
T ss_pred             cCCCceeEEecCCCCEEEEEEcc
Confidence             2456677778888866655443

...

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.87  E-value=0.004  Score=34.34  Aligned_cols=32  Identities=22%  Similarity=0.332  Sum_probs=28.9

Q ss_pred             ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcce
Q 041215           35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQR   67 (136)
Q Consensus        35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~   67 (136)
                      .|.+++|+|...+|+.+..+|.|.++++ +++.
T Consensus        13 ~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   13 RVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             cEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            7899999999999999999999999998 5543

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.79  E-value=0.0063  Score=50.03  Aligned_cols=74  Identities=20%  Similarity=0.294  Sum_probs=53.5

Q ss_pred             eeceEEEEEeeCCCCcceeEEEeeeCCCCcccee-EEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeeccc-CCCceeEE
Q 041215            4 IEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVN-SLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSR-CGQPIPCS   81 (136)
Q Consensus         4 ~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~-~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~-h~~~v~~v   81 (136)
                      .+|.+.++.+.   .+.+.++.-+..     .++ +++|.|||.+|+.|-.||+|++.|++++..++.+.. ...+|.++
T Consensus        40 ~~gelli~R~n---~qRlwtip~p~~-----~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~~s~e~~is~~  111 (665)
T KOG4640|consen   40 EKGELLIHRLN---WQRLWTIPIPGE-----NVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSFLFSVETDISKG  111 (665)
T ss_pred             cCCcEEEEEec---cceeEeccCCCC-----ccceeeeecCCCCEEEEEecCCeEEEEEccCCCceeccccccccchhee
Confidence            34445443332   344555554555     776 999999999999999999999999999888776322 34778888


Q ss_pred             EEcc
Q 041215           82 TFNT   85 (136)
Q Consensus        82 ~~sp   85 (136)
                      -|++
T Consensus       112 ~w~~  115 (665)
T KOG4640|consen  112 IWDR  115 (665)
T ss_pred             eccc
Confidence            8864

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=96.76  E-value=0.016  Score=45.20  Aligned_cols=86  Identities=13%  Similarity=0.188  Sum_probs=53.0

Q ss_pred             eceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcC-CC--cEEEEeCCCcceeeecccCCCceeEE
Q 041215            5 EGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGS-DG--AFNFWDKDSKQRLKAMSRCGQPIPCS   81 (136)
Q Consensus         5 dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~-dg--~v~vwd~~~~~~~~~~~~h~~~v~~v   81 (136)
                      +|...|+.+|..++.. ..+..+..     ......|+|++..|+..+. ++  .|.++++.++.. ..+..+...+..+
T Consensus       255 ~~~~~i~~~d~~~~~~-~~l~~~~~-----~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~  327 (417)
T TIGR02800       255 DGNPDIYVMDLDGKQL-TRLTNGPG-----IDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASP  327 (417)
T ss_pred             CCCccEEEEECCCCCE-EECCCCCC-----CCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCe
Confidence            3444455666654432 22233333     4456789999987655443 34  477778776653 3444455667788


Q ss_pred             EEccCCCEEEEEEccc
Q 041215           82 TFNTDGSIFAYSVCYD   97 (136)
Q Consensus        82 ~~sp~~~~l~s~~~dd   97 (136)
                      .|+|++.+++.+..+.
T Consensus       328 ~~spdg~~i~~~~~~~  343 (417)
T TIGR02800       328 SWSPDGDLIAFVHREG  343 (417)
T ss_pred             EECCCCCEEEEEEccC
Confidence            9999999888776543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=96.75  E-value=0.026  Score=44.02  Aligned_cols=80  Identities=10%  Similarity=-0.010  Sum_probs=57.9

Q ss_pred             ceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcC----------CCcEEEEeCCCcceeeecccCC
Q 041215            6 GRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGS----------DGAFNFWDKDSKQRLKAMSRCG   75 (136)
Q Consensus         6 G~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~----------dg~v~vwd~~~~~~~~~~~~h~   75 (136)
                      |+|.+  +|..+.+.+.++..-..     + ..+ ++|++..|+.+..          +..|.+||..+++.+.++.-..
T Consensus        27 ~~v~V--iD~~~~~v~g~i~~G~~-----P-~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~   97 (352)
T TIGR02658        27 TQVYT--IDGEAGRVLGMTDGGFL-----P-NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPE   97 (352)
T ss_pred             ceEEE--EECCCCEEEEEEEccCC-----C-cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCC
Confidence            56666  89888888887764433     3 235 9999976655554          6889999999999887776422


Q ss_pred             -------CceeEEEEccCCCEEEEEE
Q 041215           76 -------QPIPCSTFNTDGSIFAYSV   94 (136)
Q Consensus        76 -------~~v~~v~~sp~~~~l~s~~   94 (136)
                             .....++++|+|+++..+-
T Consensus        98 ~p~~~~~~~~~~~~ls~dgk~l~V~n  123 (352)
T TIGR02658        98 GPRFLVGTYPWMTSLTPDNKTLLFYQ  123 (352)
T ss_pred             CchhhccCccceEEECCCCCEEEEec
Confidence                   2334789999999877654

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=96.71  E-value=0.0016  Score=58.95  Aligned_cols=81  Identities=17%  Similarity=0.295  Sum_probs=58.4

Q ss_pred             ceeceEEEEEeeCC-CCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215            3 SIEGRVGVHHLDDS-QQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS   81 (136)
Q Consensus         3 s~dG~v~i~~~d~~-~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v   81 (136)
                      +.++++.+  ||.- .+.......+|.+     .++++++-|..++|++|+.+|.|.+||+...+..+.+..        
T Consensus      2312 ~d~~n~~l--wDtl~~~~~s~v~~~H~~-----gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-------- 2376 (2439)
T KOG1064|consen 2312 SDNRNVCL--WDTLLPPMNSLVHTCHDG-----GATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-------- 2376 (2439)
T ss_pred             CCCCcccc--hhcccCcccceeeeecCC-----CceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh--------
Confidence            45667777  6542 2222223389999     999999999999999999999999999998877776654        


Q ss_pred             EEccCCCEEEEEEcccccc
Q 041215           82 TFNTDGSIFAYSVCYDWSK  100 (136)
Q Consensus        82 ~~sp~~~~l~s~~~dd~~~  100 (136)
                       +. ...++++|+..+..+
T Consensus      2377 -~~-~~~~f~~~ss~g~ik 2393 (2439)
T KOG1064|consen 2377 -LD-TREYFVTGSSEGNIK 2393 (2439)
T ss_pred             -hh-hhheeeccCcccceE
Confidence             33 344666666655443

>PRK00178 tolB translocation protein TolB; Provisional

Probab=96.69  E-value=0.019  Score=45.26  Aligned_cols=60  Identities=15%  Similarity=0.153  Sum_probs=42.2

Q ss_pred             ceeEEEEeCCCCEEE-EEcCCC--cEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEc
Q 041215           35 SVNSLNFHPIHHTFA-TAGSDG--AFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVC   95 (136)
Q Consensus        35 ~v~~l~~~p~~~~l~-s~~~dg--~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~   95 (136)
                      .+...+|+|+|..|+ +.+.++  .|.+||+.++.. ..+..+........|+|+++.++..+.
T Consensus       244 ~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~~spDg~~i~f~s~  306 (430)
T PRK00178        244 LNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQL-SRVTNHPAIDTEPFWGKDGRTLYFTSD  306 (430)
T ss_pred             CcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCe-EEcccCCCCcCCeEECCCCCEEEEEEC
Confidence            445689999997665 555555  588889887754 445555555677899999997776543

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=96.65  E-value=0.0059  Score=47.14  Aligned_cols=87  Identities=15%  Similarity=0.115  Sum_probs=58.7

Q ss_pred             CceeceEEEEEeeCCC-----CcceeEEEeeeCCCCccceeEEEEeC-CCCEEEEEcCCCcEEEEeCCCcce---eeecc
Q 041215            2 GSIEGRVGVHHLDDSQ-----QSKNFTFKCHRDGSEIYSVNSLNFHP-IHHTFATAGSDGAFNFWDKDSKQR---LKAMS   72 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~-----~~~~~~l~~h~~~~~~~~v~~l~~~p-~~~~l~s~~~dg~v~vwd~~~~~~---~~~~~   72 (136)
                      |...|.|-.  +|.+.     ++....|- |.+     .|+++..-. ++++|++.+-+|.|.+||.+..++   +.++.
T Consensus       270 GcRngeI~~--iDLR~rnqG~~~~a~rly-h~S-----svtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYe  341 (425)
T KOG2695|consen  270 GCRNGEIFV--IDLRCRNQGNGWCAQRLY-HDS-----SVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYE  341 (425)
T ss_pred             cccCCcEEE--EEeeecccCCCcceEEEE-cCc-----chhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeee
Confidence            456677766  55542     34555544 788     888887766 668999999999999999987666   78888


Q ss_pred             cCCCce--eEEEEccCCCEEEEEEccc
Q 041215           73 RCGQPI--PCSTFNTDGSIFAYSVCYD   97 (136)
Q Consensus        73 ~h~~~v--~~v~~sp~~~~l~s~~~dd   97 (136)
                      +|...-  .-+...+....+++ .+||
T Consensus       342 GHvN~~a~l~~~v~~eeg~I~s-~GdD  367 (425)
T KOG2695|consen  342 GHVNLSAYLPAHVKEEEGSIFS-VGDD  367 (425)
T ss_pred             cccccccccccccccccceEEE-ccCe
Confidence            884222  22233455566665 4555

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.64  E-value=0.015  Score=49.11  Aligned_cols=85  Identities=19%  Similarity=0.352  Sum_probs=56.7

Q ss_pred             CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCC-----CCEEEEEcCCCcEEEEeC---CCcceeeecc
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPI-----HHTFATAGSDGAFNFWDK---DSKQRLKAMS   72 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~-----~~~l~s~~~dg~v~vwd~---~~~~~~~~~~   72 (136)
                      +||.||.|.|...  -+.....++. ...     ++..++++|+     ...+++|+.-| +.++.=   ..... ....
T Consensus        88 sCS~DGkv~I~sl--~~~~~~~~~d-f~r-----piksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~-v~l~  157 (846)
T KOG2066|consen   88 SCSDDGKVVIGSL--FTDDEITQYD-FKR-----PIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDS-VVLS  157 (846)
T ss_pred             EecCCCcEEEeec--cCCccceeEe-cCC-----cceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccc-eeee
Confidence            4789998888444  3334444432 344     8899999999     25788998888 655431   11111 2344


Q ss_pred             cCCCceeEEEEccCCCEEEEEEccc
Q 041215           73 RCGQPIPCSTFNTDGSIFAYSVCYD   97 (136)
Q Consensus        73 ~h~~~v~~v~~sp~~~~l~s~~~dd   97 (136)
                      ...++|++|.|  .|.++|.+...+
T Consensus       158 ~~eG~I~~i~W--~g~lIAWand~G  180 (846)
T KOG2066|consen  158 EGEGPIHSIKW--RGNLIAWANDDG  180 (846)
T ss_pred             cCccceEEEEe--cCcEEEEecCCC
Confidence            55699999999  788999886654

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.62  E-value=0.011  Score=46.53  Aligned_cols=82  Identities=11%  Similarity=0.138  Sum_probs=64.4

Q ss_pred             EEEeeeCCCCccceeEEEEeCCCC-EEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEccc-ccc
Q 041215           23 TFKCHRDGSEIYSVNSLNFHPIHH-TFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYD-WSK  100 (136)
Q Consensus        23 ~l~~h~~~~~~~~v~~l~~~p~~~-~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd-~~~  100 (136)
                      .+..+..     .|..++|+|..+ ++..++.+..|.+.|+++..++..+..+ .++.+++|.-+...++.|+... ...
T Consensus       188 ~lp~~g~-----~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vl  261 (463)
T KOG1645|consen  188 ILPGEGS-----FIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVL  261 (463)
T ss_pred             cccccch-----hhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEE
Confidence            4444555     889999999986 8889999999999999999888888888 8899999998887766665543 444


Q ss_pred             cccccCCCCC
Q 041215          101 GAENHNPATA  110 (136)
Q Consensus       101 ~~~~~~~~~~  110 (136)
                      -+++..|+.+
T Consensus       262 vyD~R~~~~~  271 (463)
T KOG1645|consen  262 VYDMRQPEGP  271 (463)
T ss_pred             EEEccCCCch
Confidence            5677766633

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=96.62  E-value=0.031  Score=42.68  Aligned_cols=80  Identities=14%  Similarity=0.086  Sum_probs=61.1

Q ss_pred             EEeeCCCCcceeEEEeeeCCCCccce--eEEEEeCCCCEEEEEcCC-----CcEEEEeCC-CcceeeecccCCCceeEEE
Q 041215           11 HHLDDSQQSKNFTFKCHRDGSEIYSV--NSLNFHPIHHTFATAGSD-----GAFNFWDKD-SKQRLKAMSRCGQPIPCST   82 (136)
Q Consensus        11 ~~~d~~~~~~~~~l~~h~~~~~~~~v--~~l~~~p~~~~l~s~~~d-----g~v~vwd~~-~~~~~~~~~~h~~~v~~v~   82 (136)
                      ..||..+++....+....+     .-  -.-.|+++|++|++.-.|     |.|-+||.. ....+.+++.|.---+.+.
T Consensus        31 ~v~D~~~g~~~~~~~a~~g-----RHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~  105 (305)
T PF07433_consen   31 LVFDCRTGQLLQRLWAPPG-----RHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELL  105 (305)
T ss_pred             EEEEcCCCceeeEEcCCCC-----CEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEE
Confidence            3578888877776655333     22  246899999988887654     789999998 6677889998887778999


Q ss_pred             EccCCCEEEEEEc
Q 041215           83 FNTDGSIFAYSVC   95 (136)
Q Consensus        83 ~sp~~~~l~s~~~   95 (136)
                      +.|+++.|+.|-+
T Consensus       106 l~pDG~tLvVANG  118 (305)
T PF07433_consen  106 LMPDGETLVVANG  118 (305)
T ss_pred             EcCCCCEEEEEcC
Confidence            9999988777633

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=96.60  E-value=0.017  Score=43.77  Aligned_cols=78  Identities=18%  Similarity=0.181  Sum_probs=54.2

Q ss_pred             CCceeceEEEEEeeCC-CCcceeE-EEeeeCCCCccceeEEEEeCC-CCEEEEEcCCCcEEEEeCCC-cceeeecccCCC
Q 041215            1 VGSIEGRVGVHHLDDS-QQSKNFT-FKCHRDGSEIYSVNSLNFHPI-HHTFATAGSDGAFNFWDKDS-KQRLKAMSRCGQ   76 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~-~~~~~~~-l~~h~~~~~~~~v~~l~~~p~-~~~l~s~~~dg~v~vwd~~~-~~~~~~~~~h~~   76 (136)
                      .|+.||.+..  ||.+ ++.-++. -+.|..     .|.+|.-+|. ...+++|+.|..|++||.++ ++.+..-. -.+
T Consensus       183 tGgDD~~l~~--~D~R~p~~~i~~n~kvH~~-----GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~G  254 (339)
T KOG0280|consen  183 TGGDDGSLSC--WDIRIPKTFIWHNSKVHTS-----GVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGG  254 (339)
T ss_pred             ecCCCceEEE--EEecCCcceeeecceeeec-----ceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-ccc
Confidence            3788999988  6666 3333333 456777     8888887654 47999999999999999984 45444332 225


Q ss_pred             ceeEEEEccC
Q 041215           77 PIPCSTFNTD   86 (136)
Q Consensus        77 ~v~~v~~sp~   86 (136)
                      .|..+..+|.
T Consensus       255 GVWRi~~~p~  264 (339)
T KOG0280|consen  255 GVWRIKHHPE  264 (339)
T ss_pred             ceEEEEecch
Confidence            6666666663

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=96.58  E-value=0.0032  Score=48.94  Aligned_cols=64  Identities=13%  Similarity=0.219  Sum_probs=44.9

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecc
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMS   72 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~   72 (136)
                      +..|+.|++..|... ...-.-+-+|+.     -|..+++-++ ..|.++|-|++|++||+.+|.++.++.
T Consensus       169 aDRDEkIRvs~ypa~-f~IesfclGH~e-----FVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  169 ADRDEKIRVSRYPAT-FVIESFCLGHKE-----FVSTISLTDN-YLLLSGSGDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             ecCCceEEEEecCcc-cchhhhccccHh-----heeeeeeccC-ceeeecCCCCcEEEEecccCCcccccc
Confidence            345677777555332 111122236888     8999999876 558899999999999999998876554

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=96.57  E-value=0.0013  Score=49.04  Aligned_cols=57  Identities=26%  Similarity=0.534  Sum_probs=46.5

Q ss_pred             CCceeceEEEEEeeCCCCc-ceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCC
Q 041215            1 VGSIEGRVGVHHLDDSQQS-KNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDS   64 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~-~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~   64 (136)
                      +|+.||.+.+  ||.+... +...++.|+.     +++.+-|||.. ..|++++.||.+-.||..+
T Consensus       197 cgt~dg~~~l--~d~rn~~~p~S~l~ahk~-----~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  197 CGTDDGIVGL--WDARNVAMPVSLLKAHKA-----EIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             EecCCCeEEE--EEcccccchHHHHHHhhh-----hhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            5889999998  5555433 3445678999     99999999987 7899999999999999874

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=96.56  E-value=0.0015  Score=52.18  Aligned_cols=71  Identities=21%  Similarity=0.353  Sum_probs=58.6

Q ss_pred             EEEeeeCCCCccceeEEEE-eCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEcc
Q 041215           23 TFKCHRDGSEIYSVNSLNF-HPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCY   96 (136)
Q Consensus        23 ~l~~h~~~~~~~~v~~l~~-~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d   96 (136)
                      .+++|++..   .|.++-| -|...++++|++=|.|+||+-.+++.+.-+.+-...|+|+.-+|.-.+||+++-|
T Consensus       386 vYKGHrN~~---TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid  457 (559)
T KOG1334|consen  386 VYKGHRNSR---TVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGID  457 (559)
T ss_pred             hhccccccc---ccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCc
Confidence            378888744   3666666 6888999999988999999999999888888777799999999999999976443

>PRK04792 tolB translocation protein TolB; Provisional

Probab=96.55  E-value=0.031  Score=44.73  Aligned_cols=59  Identities=15%  Similarity=0.122  Sum_probs=40.4

Q ss_pred             ceeEEEEeCCCCEEEEEcC-CC--cEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEE
Q 041215           35 SVNSLNFHPIHHTFATAGS-DG--AFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSV   94 (136)
Q Consensus        35 ~v~~l~~~p~~~~l~s~~~-dg--~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~   94 (136)
                      .+....|+|+|+.|+..+. ++  .|.+||+.++... .+....+.....+|+|+|+.++...
T Consensus       219 ~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~-~lt~~~g~~~~~~wSPDG~~La~~~  280 (448)
T PRK04792        219 PLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE-KVTSFPGINGAPRFSPDGKKLALVL  280 (448)
T ss_pred             cccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE-EecCCCCCcCCeeECCCCCEEEEEE
Confidence            7788999999987766543 33  5888898877542 2222223345789999999877643

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=96.54  E-value=0.0063  Score=52.24  Aligned_cols=72  Identities=13%  Similarity=0.116  Sum_probs=62.7

Q ss_pred             eeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEccc
Q 041215           21 NFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYD   97 (136)
Q Consensus        21 ~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd   97 (136)
                      ..+|..|..     ..+|++|+-..++|+.|+..|.|++|++.+|.......+|.+.|+.|.-+-+|.+.++.+.+.
T Consensus      1094 w~~frd~~~-----~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S 1165 (1516)
T KOG1832|consen 1094 WRSFRDETA-----LFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSS 1165 (1516)
T ss_pred             chhhhcccc-----ceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeecccc
Confidence            345556666     889999999889999999999999999999999999999999999999999999877765533

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=96.53  E-value=0.0076  Score=51.60  Aligned_cols=77  Identities=19%  Similarity=0.252  Sum_probs=57.9

Q ss_pred             CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcC---------CCcEEEEeCCCcceeeec
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGS---------DGAFNFWDKDSKQRLKAM   71 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~---------dg~v~vwd~~~~~~~~~~   71 (136)
                      +|...|+|.+  -|.++.+..+++.+|.+     .|..++.+  |++|++|+.         |..|++||+++...+.-+
T Consensus       192 ~G~t~G~V~L--rD~~s~~~iht~~aHs~-----siSDfDv~--GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI  262 (1118)
T KOG1275|consen  192 CGDTRGTVFL--RDPNSFETIHTFDAHSG-----SISDFDVQ--GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPI  262 (1118)
T ss_pred             eecccceEEe--ecCCcCceeeeeecccc-----ceeeeecc--CCeEEEeecccccccccccchhhhhhhhhhhccCCc
Confidence            3667788876  88899999999999999     88877664  789999985         566889999887666555


Q ss_pred             ccCCCceeEEEEccCC
Q 041215           72 SRCGQPIPCSTFNTDG   87 (136)
Q Consensus        72 ~~h~~~v~~v~~sp~~   87 (136)
                      .-+.++ .-+.|.|.-
T Consensus       263 ~~~~~P-~flrf~Psl  277 (1118)
T KOG1275|consen  263 QFPYGP-QFLRFHPSL  277 (1118)
T ss_pred             ccccCc-hhhhhcccc
Confidence            444433 556677753

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=96.49  E-value=0.086  Score=39.72  Aligned_cols=54  Identities=15%  Similarity=0.113  Sum_probs=43.1

Q ss_pred             ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCccee-----eecccCCCceeEEEEccCCC
Q 041215           35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRL-----KAMSRCGQPIPCSTFNTDGS   88 (136)
Q Consensus        35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~-----~~~~~h~~~v~~v~~sp~~~   88 (136)
                      .-.+.+|+.....++.+..||++.+||++.....     .+-+.|.+.++.+.|++-|.
T Consensus       205 ~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~  263 (344)
T KOG4532|consen  205 HGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGL  263 (344)
T ss_pred             CceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCc
Confidence            4568899998899999999999999999864222     23345889999999998665

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.43  E-value=0.016  Score=47.71  Aligned_cols=69  Identities=16%  Similarity=0.227  Sum_probs=59.2

Q ss_pred             ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCcee-EEEEccCCCEEEEEEcccccccccc
Q 041215           35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIP-CSTFNTDGSIFAYSVCYDWSKGAEN  104 (136)
Q Consensus        35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~-~v~~sp~~~~l~s~~~dd~~~~~~~  104 (136)
                      .+-.+.|+|.-.++|.+..+|.|-+.++. .+.+.+++-++-.+. +++|.|||.++|.|-.|+-.+.++.
T Consensus        22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dv   91 (665)
T KOG4640|consen   22 NIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDV   91 (665)
T ss_pred             ceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEc
Confidence            56789999999999999999999999988 677888887877777 9999999999999988876555443

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=96.41  E-value=0.029  Score=46.00  Aligned_cols=90  Identities=21%  Similarity=0.237  Sum_probs=63.5

Q ss_pred             CCceeceEEEEEeeCCCCcceeEEEe------eeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccC
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTFKC------HRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRC   74 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l~~------h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h   74 (136)
                      +|+.||.+-.  ||++......++..      |.+...--.|+++.|.-+|-.++.|.++|.+.|||+.+...+..- .|
T Consensus       192 ~Gt~~g~VEf--wDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~k-dh  268 (703)
T KOG2321|consen  192 CGTEDGVVEF--WDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVK-DH  268 (703)
T ss_pred             ecccCceEEE--ecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeec-cc
Confidence            4778888876  88887666555543      222111114999999988999999999999999999987654332 34


Q ss_pred             --CCceeEEEEccC--CCEEEEE
Q 041215           75 --GQPIPCSTFNTD--GSIFAYS   93 (136)
Q Consensus        75 --~~~v~~v~~sp~--~~~l~s~   93 (136)
                        .-+|..+.|.+.  +..+++.
T Consensus       269 ~~e~pi~~l~~~~~~~q~~v~S~  291 (703)
T KOG2321|consen  269 GYELPIKKLDWQDTDQQNKVVSM  291 (703)
T ss_pred             CCccceeeecccccCCCceEEec
Confidence              468889999765  3455554

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=96.21  E-value=0.011  Score=53.87  Aligned_cols=98  Identities=12%  Similarity=0.171  Sum_probs=69.9

Q ss_pred             CCceeceEEEEEeeCCCCcceeEEEee-eCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCc--------------
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTFKCH-RDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSK--------------   65 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l~~h-~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~--------------   65 (136)
                      .||.||.+++|+|  ..+++...+..- ..     .|+.+.|+.+|+.+..+..||.+.+|.....              
T Consensus      2225 tgs~dgsv~~~~w--~~~~~v~~~rt~g~s-----~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~~s~qchnk~~~D 2297 (2439)
T KOG1064|consen 2225 TGSQDGSVRMFEW--GHGQQVVCFRTAGNS-----RVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPYTSWQCHNKALSD 2297 (2439)
T ss_pred             ecCCCceEEEEec--cCCCeEEEeeccCcc-----hhhhhhhcccCCceeeeccCCceeecccCCcceeccccCCccccc
Confidence            4789999999888  555666666532 14     7888888888888888888888888854311              


Q ss_pred             -----------------------------ceeeecccCCCceeEEEEccCCCEEEEEEccccccccccc
Q 041215           66 -----------------------------QRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAENH  105 (136)
Q Consensus        66 -----------------------------~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd~~~~~~~~  105 (136)
                                                   ..-.....|.+.+++++|.|..+++++|+.++....++..
T Consensus      2298 f~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~r 2366 (2439)
T KOG1064|consen 2298 FRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIR 2366 (2439)
T ss_pred             eeeeehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehH
Confidence                                         0001113678889999999999999999888765554443

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=96.11  E-value=0.014  Score=45.15  Aligned_cols=77  Identities=17%  Similarity=0.289  Sum_probs=54.2

Q ss_pred             CceeceEEEEEeeCCCCc---ceeEEEeeeCCCCccceeEE--EEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccC--
Q 041215            2 GSIEGRVGVHHLDDSQQS---KNFTFKCHRDGSEIYSVNSL--NFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRC--   74 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~---~~~~l~~h~~~~~~~~v~~l--~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h--   74 (136)
                      .+++|.|.+  ||.+-.+   ...++.+|-+     .-..+  -.++....++++++|...++|.+..+..+.+++..  
T Consensus       317 S~M~gkikL--yD~R~~K~~~~V~qYeGHvN-----~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s  389 (425)
T KOG2695|consen  317 SDMTGKIKL--YDLRATKCKKSVMQYEGHVN-----LSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYS  389 (425)
T ss_pred             ccCcCceeE--eeehhhhcccceeeeecccc-----cccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCc
Confidence            467898888  6665444   4777778765     33322  33455578999999999999999999888776543  


Q ss_pred             --CCceeEEEEcc
Q 041215           75 --GQPIPCSTFNT   85 (136)
Q Consensus        75 --~~~v~~v~~sp   85 (136)
                        ...+.+++|..
T Consensus       390 ~~e~d~~sv~~~s  402 (425)
T KOG2695|consen  390 ASEVDIPSVAFDS  402 (425)
T ss_pred             cccccccceehhc
Confidence              34566777743

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.10  E-value=0.044  Score=46.86  Aligned_cols=57  Identities=18%  Similarity=0.254  Sum_probs=43.2

Q ss_pred             ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEE
Q 041215           35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAY   92 (136)
Q Consensus        35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s   92 (136)
                      ..+|++-..+ ..|+.|+.+|.|++||-......-.+++-+.||..|..+.||++++.
T Consensus       579 ~Fs~~aTt~~-G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwila  635 (794)
T PF08553_consen  579 NFSCFATTED-GYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILA  635 (794)
T ss_pred             CceEEEecCC-ceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEE
Confidence            5667766665 45788999999999995433333456677899999999999997663

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PRK01029 tolB translocation protein TolB; Provisional

Probab=96.10  E-value=0.071  Score=42.47  Aligned_cols=61  Identities=11%  Similarity=0.160  Sum_probs=35.9

Q ss_pred             ceeEEEEeCCCCEEEEEc-CCC----cEEEEeCCCc---ceeeecccCCCceeEEEEccCCCEEEEEEc
Q 041215           35 SVNSLNFHPIHHTFATAG-SDG----AFNFWDKDSK---QRLKAMSRCGQPIPCSTFNTDGSIFAYSVC   95 (136)
Q Consensus        35 ~v~~l~~~p~~~~l~s~~-~dg----~v~vwd~~~~---~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~   95 (136)
                      .....+|+|||+.|+..+ .+|    .+..|++..+   ..........+.....+|+|||+.|+..+.
T Consensus       232 ~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~  300 (428)
T PRK01029        232 NQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSN  300 (428)
T ss_pred             CccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEEC
Confidence            445679999997665443 233    3444666542   222222222234467899999998776653

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=96.08  E-value=0.11  Score=39.18  Aligned_cols=69  Identities=12%  Similarity=0.020  Sum_probs=51.4

Q ss_pred             ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcce--eeec-ccCCCceeEEEEccCCCEEEEEEccccccccc
Q 041215           35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQR--LKAM-SRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAE  103 (136)
Q Consensus        35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~--~~~~-~~h~~~v~~v~~sp~~~~l~s~~~dd~~~~~~  103 (136)
                      .+..+.+++++.++++.++...|.+|.+.+...  +... ....+.-.+.+|+.....+|++..|++...++
T Consensus       160 ~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~D  231 (344)
T KOG4532|consen  160 TQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYD  231 (344)
T ss_pred             ceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEE
Confidence            478899999999999999999999998875321  2211 12234457889999999999998888655443

>smart00320 WD40 WD40 repeats

Probab=96.07  E-value=0.02  Score=27.39  Aligned_cols=33  Identities=21%  Similarity=0.286  Sum_probs=26.4

Q ss_pred             ceeeecccCCCceeEEEEccCCCEEEEEEcccc
Q 041215           66 QRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDW   98 (136)
Q Consensus        66 ~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd~   98 (136)
                      .....+..|...|.++.|++.+.++++++.+..
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~   35 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGT   35 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCe
Confidence            345566678889999999999999998877664

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.05  E-value=0.0089  Score=48.97  Aligned_cols=62  Identities=19%  Similarity=0.417  Sum_probs=47.7

Q ss_pred             CCceeceEEEEEeeCC-----CCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceee
Q 041215            1 VGSIEGRVGVHHLDDS-----QQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLK   69 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~-----~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~   69 (136)
                      .+|.|.+|.+|.+..+     +....++++.|+.     +|..+.|-.+-+.++++  ||.|++||-.-+..+.
T Consensus       752 SASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk-----~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~La  818 (1034)
T KOG4190|consen  752 SASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKK-----PIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLA  818 (1034)
T ss_pred             eccCCceEEEEEeccccCccccceeeeEhhhccC-----cccceeeeeccceeeec--cCcceeecccccchhH
Confidence            3688999999888653     3456788889999     99999998887777554  6889999965554433

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=95.86  E-value=0.023  Score=45.60  Aligned_cols=42  Identities=21%  Similarity=0.327  Sum_probs=36.2

Q ss_pred             eeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcce
Q 041215           21 NFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQR   67 (136)
Q Consensus        21 ~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~   67 (136)
                      .+.|..|.+     -|+.+.|+..|..|++++.|..|.+||...+..
T Consensus       135 ~~kL~~H~G-----cVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~  176 (559)
T KOG1334|consen  135 QKKLNKHKG-----CVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSP  176 (559)
T ss_pred             hhcccCCCC-----ccceeeecccCceeeccCccceEEeehhhccCc
Confidence            456778888     999999999999999999999999998765443

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.85  E-value=0.013  Score=50.84  Aligned_cols=67  Identities=22%  Similarity=0.356  Sum_probs=51.4

Q ss_pred             eeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEE---ccCCCEEEEE
Q 041215           27 HRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTF---NTDGSIFAYS   93 (136)
Q Consensus        27 h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~---sp~~~~l~s~   93 (136)
                      |.+.....+|++++|+.+|.++..|-.+|.|.+||+..+..++.+..|..+...+-+   ..++..+.++
T Consensus       124 ~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~  193 (1206)
T KOG2079|consen  124 HQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTS  193 (1206)
T ss_pred             hcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEc
Confidence            443444559999999999999999999999999999999888888877766665543   3344455554

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=95.77  E-value=0.18  Score=38.80  Aligned_cols=84  Identities=13%  Similarity=0.196  Sum_probs=57.2

Q ss_pred             ceEEEEEeeCCCCcceeEEE-eeeCCCCccceeEEEEeCCCCEEEEEcC----CCcEEEEeCCC--cc--eeeecccCCC
Q 041215            6 GRVGVHHLDDSQQSKNFTFK-CHRDGSEIYSVNSLNFHPIHHTFATAGS----DGAFNFWDKDS--KQ--RLKAMSRCGQ   76 (136)
Q Consensus         6 G~v~i~~~d~~~~~~~~~l~-~h~~~~~~~~v~~l~~~p~~~~l~s~~~----dg~v~vwd~~~--~~--~~~~~~~h~~   76 (136)
                      +.|.++.+|..+++....-. .-..     ....++++|++++|++...    ++.|..|++..  +.  .+.+......
T Consensus        13 ~gI~~~~~d~~~g~l~~~~~~~~~~-----~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~   87 (345)
T PF10282_consen   13 GGIYVFRFDEETGTLTLVQTVAEGE-----NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGS   87 (345)
T ss_dssp             TEEEEEEEETTTTEEEEEEEEEESS-----SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSS
T ss_pred             CcEEEEEEcCCCCCceEeeeecCCC-----CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCC
Confidence            67888888887766543322 2233     6678999999998888877    46788888765  32  3344443445


Q ss_pred             ceeEEEEccCCCEEEEEE
Q 041215           77 PIPCSTFNTDGSIFAYSV   94 (136)
Q Consensus        77 ~v~~v~~sp~~~~l~s~~   94 (136)
                      ....++++|++++++++.
T Consensus        88 ~p~~i~~~~~g~~l~van  105 (345)
T PF10282_consen   88 SPCHIAVDPDGRFLYVAN  105 (345)
T ss_dssp             CEEEEEECTTSSEEEEEE
T ss_pred             CcEEEEEecCCCEEEEEE
Confidence            556799999999988764

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=95.75  E-value=0.09  Score=42.48  Aligned_cols=79  Identities=16%  Similarity=0.230  Sum_probs=58.3

Q ss_pred             ceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCC----cEEEEeCCCcceeeecccCCCceeEE
Q 041215            6 GRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDG----AFNFWDKDSKQRLKAMSRCGQPIPCS   81 (136)
Q Consensus         6 G~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg----~v~vwd~~~~~~~~~~~~h~~~v~~v   81 (136)
                      .+.-+|.+|..++.....=++..+     -|+...|||++++++-+--+|    .|+++|+..++..... ...+--.+=
T Consensus       421 dr~el~vididngnv~~idkS~~~-----lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vT-T~ta~DfsP  494 (668)
T COG4946         421 DRFELWVIDIDNGNVRLIDKSEYG-----LITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVT-TPTAYDFSP  494 (668)
T ss_pred             CceEEEEEEecCCCeeEecccccc-----eeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEec-CCcccccCc
Confidence            346678889988888777666677     899999999999999887776    4889999987654332 222333556


Q ss_pred             EEccCCCEE
Q 041215           82 TFNTDGSIF   90 (136)
Q Consensus        82 ~~sp~~~~l   90 (136)
                      +|.|++++|
T Consensus       495 aFD~d~ryL  503 (668)
T COG4946         495 AFDPDGRYL  503 (668)
T ss_pred             ccCCCCcEE
Confidence            788888753

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=95.70  E-value=0.037  Score=46.73  Aligned_cols=90  Identities=19%  Similarity=0.254  Sum_probs=67.1

Q ss_pred             CCceeceEEEEEeeCCC------C-------cceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcce
Q 041215            1 VGSIEGRVGVHHLDDSQ------Q-------SKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQR   67 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~------~-------~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~   67 (136)
                      +|..||.+.+.-++..+      +       ....++.+|..     .|--+.|+.+.+.|-+...+|.|.+|-+..+.-
T Consensus        31 cgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~-----sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW  105 (1189)
T KOG2041|consen   31 CGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNA-----SVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSW  105 (1189)
T ss_pred             eccccceeEEEEccccCCcccccccccccccchhhhhccCcc-----eEEEEEeccccccccccCCCceEEEEeeecccH
Confidence            47788988886665421      1       12356778888     999999999999999999999999999887755


Q ss_pred             eeeccc--CCCceeEEEEccCCCEEEEEEc
Q 041215           68 LKAMSR--CGQPIPCSTFNTDGSIFAYSVC   95 (136)
Q Consensus        68 ~~~~~~--h~~~v~~v~~sp~~~~l~s~~~   95 (136)
                      .-++..  ..+.|.+|+|+.+|.-++..-.
T Consensus       106 ~EEMiNnRnKSvV~SmsWn~dG~kIcIvYe  135 (1189)
T KOG2041|consen  106 CEEMINNRNKSVVVSMSWNLDGTKICIVYE  135 (1189)
T ss_pred             HHHHhhCcCccEEEEEEEcCCCcEEEEEEc
Confidence            444322  3578899999999886655433

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=95.65  E-value=0.12  Score=40.02  Aligned_cols=86  Identities=9%  Similarity=0.188  Sum_probs=63.0

Q ss_pred             EEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCC
Q 041215            9 GVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGS   88 (136)
Q Consensus         9 ~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~   88 (136)
                      .+|+||.+..+....+. ...     +|.+..|+|.-..|+.+.....+++|-.. |......+..+-.|..++|..+|.
T Consensus       343 alW~Wdlq~l~l~avLi-Qk~-----piraf~WdP~~prL~vctg~srLY~W~ps-g~~~V~vP~~GF~i~~l~W~~~g~  415 (447)
T KOG4497|consen  343 ALWLWDLQNLKLHAVLI-QKH-----PIRAFEWDPGRPRLVVCTGKSRLYFWAPS-GPRVVGVPKKGFNIQKLQWLQPGE  415 (447)
T ss_pred             eEEEEechhhhhhhhhh-hcc-----ceeEEEeCCCCceEEEEcCCceEEEEcCC-CceEEecCCCCceeeeEEecCCCc
Confidence            46788887665555543 456     89999999988666666555668889654 444444455567899999999999


Q ss_pred             EEEEEEccccccc
Q 041215           89 IFAYSVCYDWSKG  101 (136)
Q Consensus        89 ~l~s~~~dd~~~~  101 (136)
                      .++..+.|-|-..
T Consensus       416 ~i~l~~kDafc~a  428 (447)
T KOG4497|consen  416 FIVLCGKDAFCVA  428 (447)
T ss_pred             EEEEEcCCceEEE
Confidence            9998888887644

>PRK04043 tolB translocation protein TolB; Provisional

Probab=95.64  E-value=0.2  Score=39.86  Aligned_cols=80  Identities=9%  Similarity=0.034  Sum_probs=47.4

Q ss_pred             EEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCC-EEEEEcCC--CcEEEEeCCCcceeeecccCCCceeEEEEcc
Q 041215            9 GVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHH-TFATAGSD--GAFNFWDKDSKQRLKAMSRCGQPIPCSTFNT   85 (136)
Q Consensus         9 ~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~-~l~s~~~d--g~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp   85 (136)
                      .||.+|..+++..... ...+     .....+|+|||. .+++.+.+  ..|.++|+..+. ...+..+........|+|
T Consensus       214 ~Iyv~dl~tg~~~~lt-~~~g-----~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~-~~~LT~~~~~d~~p~~SP  286 (419)
T PRK04043        214 TLYKYNLYTGKKEKIA-SSQG-----MLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT-LTQITNYPGIDVNGNFVE  286 (419)
T ss_pred             EEEEEECCCCcEEEEe-cCCC-----cEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc-EEEcccCCCccCccEECC
Confidence            4555665554433322 2333     455678999996 44455444  357777877765 344444433334568999


Q ss_pred             CCCEEEEEEc
Q 041215           86 DGSIFAYSVC   95 (136)
Q Consensus        86 ~~~~l~s~~~   95 (136)
                      ||+.++-.+.
T Consensus       287 DG~~I~F~Sd  296 (419)
T PRK04043        287 DDKRIVFVSD  296 (419)
T ss_pred             CCCEEEEEEC
Confidence            9987666543

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=95.51  E-value=0.056  Score=44.24  Aligned_cols=61  Identities=16%  Similarity=0.184  Sum_probs=43.9

Q ss_pred             ceeEEEEeCCCCEEEEEcC---CCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEc
Q 041215           35 SVNSLNFHPIHHTFATAGS---DGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVC   95 (136)
Q Consensus        35 ~v~~l~~~p~~~~l~s~~~---dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~   95 (136)
                      ..+.+.|+|.|++++.++.   .|.+.++|+.-..+...-.......+.+.|.|.|++++++++
T Consensus       494 ~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss  557 (698)
T KOG2314|consen  494 FANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSS  557 (698)
T ss_pred             ccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeee
Confidence            4678999999998777654   577999998743332222222345688999999999998755

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=95.40  E-value=0.55  Score=36.16  Aligned_cols=85  Identities=14%  Similarity=0.116  Sum_probs=54.4

Q ss_pred             eeceEEEEEeeCCCCcc--eeEEEeeeCCCCccceeEEEEeCCCCEEEEEcC-CCcEEEEeCCC-cceeee---c-----
Q 041215            4 IEGRVGVHHLDDSQQSK--NFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGS-DGAFNFWDKDS-KQRLKA---M-----   71 (136)
Q Consensus         4 ~dG~v~i~~~d~~~~~~--~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~-dg~v~vwd~~~-~~~~~~---~-----   71 (136)
                      .+|.|..+.++..++..  +........     ....++++|++.+|+.+.. +|.|.++++.. +.....   +     
T Consensus        60 ~~g~v~~~~i~~~~g~L~~~~~~~~~g~-----~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~  134 (345)
T PF10282_consen   60 DSGGVSSYRIDPDTGTLTLLNSVPSGGS-----SPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGS  134 (345)
T ss_dssp             TTTEEEEEEEETTTTEEEEEEEEEESSS-----CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEE
T ss_pred             CCCCEEEEEECCCcceeEEeeeeccCCC-----CcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCC
Confidence            35677776666653332  222222233     5678999999998888875 78899999876 432211   1     


Q ss_pred             -----ccCCCceeEEEEccCCCEEEEE
Q 041215           72 -----SRCGQPIPCSTFNTDGSIFAYS   93 (136)
Q Consensus        72 -----~~h~~~v~~v~~sp~~~~l~s~   93 (136)
                           .......+++.|+|+++++.+.
T Consensus       135 g~~~~rq~~~h~H~v~~~pdg~~v~v~  161 (345)
T PF10282_consen  135 GPNPDRQEGPHPHQVVFSPDGRFVYVP  161 (345)
T ss_dssp             ESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred             CCcccccccccceeEEECCCCCEEEEE
Confidence                 1123567899999999977754

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=95.31  E-value=0.71  Score=35.81  Aligned_cols=84  Identities=12%  Similarity=0.163  Sum_probs=56.8

Q ss_pred             eceEEEEEeeCCCCcceeEEEe--eeCCCCccceeEEEEeCCCCEEEEEcCC-CcEEEEeCCC-cce--eeecccCCCc-
Q 041215            5 EGRVGVHHLDDSQQSKNFTFKC--HRDGSEIYSVNSLNFHPIHHTFATAGSD-GAFNFWDKDS-KQR--LKAMSRCGQP-   77 (136)
Q Consensus         5 dG~v~i~~~d~~~~~~~~~l~~--h~~~~~~~~v~~l~~~p~~~~l~s~~~d-g~v~vwd~~~-~~~--~~~~~~h~~~-   77 (136)
                      +|.|..+.+|..++.....-..  -..     +.+.+++++++++|++++.. |.|.++-+.+ |..  ..+...|.+. 
T Consensus        63 ~ggvaay~iD~~~G~Lt~ln~~~~~g~-----~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~  137 (346)
T COG2706          63 EGGVAAYRIDPDDGRLTFLNRQTLPGS-----PPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSG  137 (346)
T ss_pred             cCcEEEEEEcCCCCeEEEeeccccCCC-----CCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCC
Confidence            6777777777765544332211  122     45889999999999999875 6799988754 432  1222344444 


Q ss_pred             ---------eeEEEEccCCCEEEEE
Q 041215           78 ---------IPCSTFNTDGSIFAYS   93 (136)
Q Consensus        78 ---------v~~v~~sp~~~~l~s~   93 (136)
                               ++++.|+|++++|++.
T Consensus       138 p~~rQ~~~h~H~a~~tP~~~~l~v~  162 (346)
T COG2706         138 PHERQESPHVHSANFTPDGRYLVVP  162 (346)
T ss_pred             CCccccCCccceeeeCCCCCEEEEe
Confidence                     8999999999988865

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.27  E-value=0.016  Score=47.61  Aligned_cols=70  Identities=16%  Similarity=0.199  Sum_probs=56.4

Q ss_pred             eeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCC-------cceeeecccCCCceeEEEEccCCCEEEEE
Q 041215           21 NFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDS-------KQRLKAMSRCGQPIPCSTFNTDGSIFAYS   93 (136)
Q Consensus        21 ~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~-------~~~~~~~~~h~~~v~~v~~sp~~~~l~s~   93 (136)
                      +..|.+|+.     .|..+.---+.+-+++++.|.+|++|.+..       ..+..++..|..+|+.+.|-.+-++++++
T Consensus       728 L~nf~GH~~-----~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc  802 (1034)
T KOG4190|consen  728 LCNFTGHQE-----KIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC  802 (1034)
T ss_pred             eecccCcHH-----HhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec
Confidence            455677887     787776665667889999999999999763       23566788999999999999999999976


Q ss_pred             Ec
Q 041215           94 VC   95 (136)
Q Consensus        94 ~~   95 (136)
                      .+
T Consensus       803 D~  804 (1034)
T KOG4190|consen  803 DG  804 (1034)
T ss_pred             cC
Confidence            54

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.13  E-value=0.066  Score=42.21  Aligned_cols=75  Identities=11%  Similarity=0.116  Sum_probs=52.7

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCcc-eeeeccc--CCCc
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQ-RLKAMSR--CGQP   77 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~-~~~~~~~--h~~~   77 (136)
                      +|.+..|.|  +|.++.....++..+ .     .+++++|.-+. +++.+|...|.|.+||+.... .+.++.+  ...+
T Consensus       212 asl~nkiki--~dlet~~~vssy~a~-~-----~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~p  283 (463)
T KOG1645|consen  212 ASLGNKIKI--MDLETSCVVSSYIAY-N-----QIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINP  283 (463)
T ss_pred             eccCceEEE--Eecccceeeeheecc-C-----CceeeeeccCCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCc
Confidence            566666766  888777776666666 5     89999998877 789999999999999997532 2333333  2345


Q ss_pred             eeEEEEc
Q 041215           78 IPCSTFN   84 (136)
Q Consensus        78 v~~v~~s   84 (136)
                      |..|+.-
T Consensus       284 v~~i~~~  290 (463)
T KOG1645|consen  284 VHKIAPV  290 (463)
T ss_pred             ceeeccc
Confidence            6655553

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=95.04  E-value=0.43  Score=39.05  Aligned_cols=60  Identities=15%  Similarity=0.234  Sum_probs=44.2

Q ss_pred             ceeEEEEeCCCCEE-EEEcCC-CcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEccc
Q 041215           35 SVNSLNFHPIHHTF-ATAGSD-GAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYD   97 (136)
Q Consensus        35 ~v~~l~~~p~~~~l-~s~~~d-g~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd   97 (136)
                      +|.++.|+|+++.+ ++-+.. ..+.|||++ +..+..+  ..++-+++-|+|.|++++.|+-++
T Consensus       272 PVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGN  333 (566)
T KOG2315|consen  272 PVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGN  333 (566)
T ss_pred             CceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCC
Confidence            99999999999544 444443 468888876 3445444  346779999999999999886655

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=94.98  E-value=0.24  Score=38.23  Aligned_cols=81  Identities=10%  Similarity=0.009  Sum_probs=50.7

Q ss_pred             EEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccC--------------
Q 041215            9 GVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRC--------------   74 (136)
Q Consensus         9 ~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h--------------   74 (136)
                      .++++|..+++....... ..     .+....|+|+|+.++-.. ++.|.+++..++... ++...              
T Consensus        24 ~y~i~d~~~~~~~~l~~~-~~-----~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~-~lT~dg~~~i~nG~~dwvy   95 (353)
T PF00930_consen   24 DYYIYDIETGEITPLTPP-PP-----KLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQET-QLTTDGEPGIYNGVPDWVY   95 (353)
T ss_dssp             EEEEEETTTTEEEESS-E-ET-----TBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEE-ESES--TTTEEESB--HHH
T ss_pred             eEEEEecCCCceEECcCC-cc-----ccccceeecCCCeeEEEe-cCceEEEECCCCCeE-EeccccceeEEcCccceec
Confidence            345577766443333222 45     788999999998887775 467999887766433 22111              


Q ss_pred             ----CCceeEEEEccCCCEEEEEEccc
Q 041215           75 ----GQPIPCSTFNTDGSIFAYSVCYD   97 (136)
Q Consensus        75 ----~~~v~~v~~sp~~~~l~s~~~dd   97 (136)
                          -+.-..+.|||+++.||...-|+
T Consensus        96 eEEv~~~~~~~~WSpd~~~la~~~~d~  122 (353)
T PF00930_consen   96 EEEVFDRRSAVWWSPDSKYLAFLRFDE  122 (353)
T ss_dssp             HHHTSSSSBSEEE-TTSSEEEEEEEE-
T ss_pred             cccccccccceEECCCCCEEEEEEECC
Confidence                12335789999999999887766

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=94.98  E-value=0.54  Score=35.46  Aligned_cols=29  Identities=24%  Similarity=0.279  Sum_probs=26.2

Q ss_pred             ceeEEEEeCCCCEEEEEcCCCcEEEEeCC
Q 041215           35 SVNSLNFHPIHHTFATAGSDGAFNFWDKD   63 (136)
Q Consensus        35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~   63 (136)
                      .-..++|+||+.+|+.+.+.|+|++||+.
T Consensus        45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~   73 (282)
T PF15492_consen   45 QWRKLAWSPDCTLLAYAESTGTIRVFDLM   73 (282)
T ss_pred             hheEEEECCCCcEEEEEcCCCeEEEEecc
Confidence            35689999999999999999999999975

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.88  E-value=0.12  Score=43.89  Aligned_cols=54  Identities=13%  Similarity=0.100  Sum_probs=42.1

Q ss_pred             eCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccC-----CCEEEEEEcc
Q 041215           42 HPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTD-----GSIFAYSVCY   96 (136)
Q Consensus        42 ~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~-----~~~l~s~~~d   96 (136)
                      ..+|.++++|+.||.|.+..+.+.+...++ ....++.+|+++|+     .+.+++|+.-
T Consensus        80 ~~~Gey~asCS~DGkv~I~sl~~~~~~~~~-df~rpiksial~Pd~~~~~sk~fv~GG~a  138 (846)
T KOG2066|consen   80 ILEGEYVASCSDDGKVVIGSLFTDDEITQY-DFKRPIKSIALHPDFSRQQSKQFVSGGMA  138 (846)
T ss_pred             ccCCceEEEecCCCcEEEeeccCCccceeE-ecCCcceeEEeccchhhhhhhheeecCcc
Confidence            345899999999999999988887766655 34579999999997     3466666554

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=94.71  E-value=0.29  Score=42.39  Aligned_cols=73  Identities=12%  Similarity=0.191  Sum_probs=53.6

Q ss_pred             eeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEE
Q 041215           13 LDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAY   92 (136)
Q Consensus        13 ~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s   92 (136)
                      +|.++.+......-..+     .|.=++  .+++++++|...|.|.+-|..+-+.++++..|.+.|..  |+-+|.+|++
T Consensus       162 ~Dl~~~~e~r~~~v~a~-----~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD--fDv~GNlLit  232 (1118)
T KOG1275|consen  162 IDLNTEKETRTTNVSAS-----GVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD--FDVQGNLLIT  232 (1118)
T ss_pred             eecccceeeeeeeccCC-----ceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceee--eeccCCeEEE
Confidence            45555554444433333     344443  35689999999999999999999999999999998876  4558988887


Q ss_pred             EE
Q 041215           93 SV   94 (136)
Q Consensus        93 ~~   94 (136)
                      ++
T Consensus       233 CG  234 (1118)
T KOG1275|consen  233 CG  234 (1118)
T ss_pred             ee
Confidence            64

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=94.62  E-value=0.074  Score=45.82  Aligned_cols=59  Identities=17%  Similarity=0.276  Sum_probs=49.3

Q ss_pred             ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEE
Q 041215           35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYS   93 (136)
Q Consensus        35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~   93 (136)
                      .+.+++|||..-.|+.+=..|.+.+|...+.+.-.....|..+|.-+.|||+|..+.++
T Consensus        61 hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~  119 (1416)
T KOG3617|consen   61 HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTL  119 (1416)
T ss_pred             ehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEc
Confidence            45689999987788888788999999988776544455789999999999999998875

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=94.35  E-value=0.1  Score=39.29  Aligned_cols=39  Identities=13%  Similarity=0.266  Sum_probs=33.5

Q ss_pred             cceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecc
Q 041215           34 YSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMS   72 (136)
Q Consensus        34 ~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~   72 (136)
                      +-|..|+++|+|.+|++...+|.|.+|++.+........
T Consensus       230 d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~  268 (282)
T PF15492_consen  230 DGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWK  268 (282)
T ss_pred             CceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence            378999999999999999999999999998766555443

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=94.26  E-value=1.2  Score=34.50  Aligned_cols=83  Identities=14%  Similarity=0.191  Sum_probs=54.4

Q ss_pred             ceEEEEEeeCCCCcce-eEEEeeeCCCCccceeEEEEeCCCCEEEEEcCC---CcEEEEeCCC--cce--eeecccCCCc
Q 041215            6 GRVGVHHLDDSQQSKN-FTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSD---GAFNFWDKDS--KQR--LKAMSRCGQP   77 (136)
Q Consensus         6 G~v~i~~~d~~~~~~~-~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~d---g~v~vwd~~~--~~~--~~~~~~h~~~   77 (136)
                      .-|..|.+|..+++.. -.+-...+     .++-|+|+|+++.|.++..+   |.|-.|.++.  |..  +........+
T Consensus        16 ~gI~v~~ld~~~g~l~~~~~v~~~~-----nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~   90 (346)
T COG2706          16 QGIYVFNLDTKTGELSLLQLVAELG-----NPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSP   90 (346)
T ss_pred             CceEEEEEeCcccccchhhhccccC-----CCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCC
Confidence            3466677775544332 22334556     88999999999888888765   5566665553  543  2333333455


Q ss_pred             eeEEEEccCCCEEEEE
Q 041215           78 IPCSTFNTDGSIFAYS   93 (136)
Q Consensus        78 v~~v~~sp~~~~l~s~   93 (136)
                      -..|++++++++++++
T Consensus        91 p~yvsvd~~g~~vf~A  106 (346)
T COG2706          91 PCYVSVDEDGRFVFVA  106 (346)
T ss_pred             CeEEEECCCCCEEEEE
Confidence            5889999999999976

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=94.18  E-value=0.25  Score=38.15  Aligned_cols=69  Identities=12%  Similarity=0.170  Sum_probs=42.8

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCce
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPI   78 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v   78 (136)
                      ++.||.+..  +|..+++.+........  .  .......  .+..++.++.+|.|.++|..+++.+..+..+...+
T Consensus       285 ~~~~G~l~~--~d~~tG~~~W~~~~~~~--~--~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~  353 (377)
T TIGR03300       285 TDADGVVVA--LDRRSGSELWKNDELKY--R--QLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGI  353 (377)
T ss_pred             ECCCCeEEE--EECCCCcEEEccccccC--C--ccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcc
Confidence            345666654  77777766655422111  0  1112222  35688888999999999999999888776655433

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=93.78  E-value=0.45  Score=38.11  Aligned_cols=92  Identities=13%  Similarity=0.106  Sum_probs=54.2

Q ss_pred             EEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCC-EEEEEcCCCc--EEEEeCCCcceeeecccCCCceeEEEEccC
Q 041215           10 VHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHH-TFATAGSDGA--FNFWDKDSKQRLKAMSRCGQPIPCSTFNTD   86 (136)
Q Consensus        10 i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~-~l~s~~~dg~--v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~   86 (136)
                      ++++|..++.....+. ..+     .-..-+|+|+|+ ++++...|+.  |.+.|+..+.. ..+..-.+.-..=.|+|+
T Consensus       220 i~~~~l~~g~~~~i~~-~~g-----~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~-~~Lt~~~gi~~~Ps~spd  292 (425)
T COG0823         220 IYYLDLNTGKRPVILN-FNG-----NNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNL-PRLTNGFGINTSPSWSPD  292 (425)
T ss_pred             EEEEeccCCccceeec-cCC-----ccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcc-eecccCCccccCccCCCC
Confidence            4455655554444433 222     334678999995 6667777776  55667766553 233332233335679999


Q ss_pred             CCEEEEEEcccccccccccCCC
Q 041215           87 GSIFAYSVCYDWSKGAENHNPA  108 (136)
Q Consensus        87 ~~~l~s~~~dd~~~~~~~~~~~  108 (136)
                      |+.++-.++..+....-...++
T Consensus       293 G~~ivf~Sdr~G~p~I~~~~~~  314 (425)
T COG0823         293 GSKIVFTSDRGGRPQIYLYDLE  314 (425)
T ss_pred             CCEEEEEeCCCCCcceEEECCC
Confidence            9998888776665544333333

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=93.75  E-value=0.12  Score=43.34  Aligned_cols=61  Identities=5%  Similarity=0.015  Sum_probs=45.3

Q ss_pred             ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcc---eeeec---ccCCCceeEEEEccCCCEEEEEEc
Q 041215           35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQ---RLKAM---SRCGQPIPCSTFNTDGSIFAYSVC   95 (136)
Q Consensus        35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~---~~~~~---~~h~~~v~~v~~sp~~~~l~s~~~   95 (136)
                      .+..++++++..+++.|+..|.|.++.+..+.   .+..-   ..|...|+|++|++++..+.+|.+
T Consensus        78 ~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~  144 (726)
T KOG3621|consen   78 ITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDS  144 (726)
T ss_pred             eEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCC
Confidence            45667888888888899889999988776532   12211   236789999999999998887644

>PRK04043 tolB translocation protein TolB; Provisional

Probab=93.73  E-value=1.5  Score=34.90  Aligned_cols=60  Identities=12%  Similarity=0.096  Sum_probs=40.2

Q ss_pred             ceeEEEEeCCCCE-EEEEcC---CCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEc
Q 041215           35 SVNSLNFHPIHHT-FATAGS---DGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVC   95 (136)
Q Consensus        35 ~v~~l~~~p~~~~-l~s~~~---dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~   95 (136)
                      ......|+|+|+. ++-.+.   ...|.++|+.+++... +....+......|+|||+.++....
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~-lt~~~g~~~~~~~SPDG~~la~~~~  252 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK-IASSQGMLVVSDVSKDGSKLLLTMA  252 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE-EecCCCcEEeeEECCCCCEEEEEEc
Confidence            5567899999963 553333   3468888998876533 3234455667889999987665443

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=93.71  E-value=1.6  Score=38.88  Aligned_cols=62  Identities=6%  Similarity=-0.008  Sum_probs=45.3

Q ss_pred             eeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecc-------------cCCCceeEEEEccCCCEEEEEEccc
Q 041215           36 VNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMS-------------RCGQPIPCSTFNTDGSIFAYSVCYD   97 (136)
Q Consensus        36 v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~-------------~h~~~v~~v~~sp~~~~l~s~~~dd   97 (136)
                      ..++++.++|..+++-..++.|++||..++.......             +.......|+++++|+++++-..+.
T Consensus       806 P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn  880 (1057)
T PLN02919        806 PLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNS  880 (1057)
T ss_pred             CceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCC
Confidence            4588999999988888889999999998765432111             1123567899999999877654444

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=93.50  E-value=0.35  Score=35.53  Aligned_cols=91  Identities=10%  Similarity=0.008  Sum_probs=56.7

Q ss_pred             CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEE-EEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCC-Cce
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSL-NFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCG-QPI   78 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l-~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~-~~v   78 (136)
                      ||+.||.|.++.+... +........-..     .+.++ .-..++.+..++..++.|+.|++.-.+.+.....|. .++
T Consensus        75 vG~~dg~v~~~n~n~~-g~~~d~~~s~~e-----~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~  148 (238)
T KOG2444|consen   75 VGTSDGAVYVFNWNLE-GAHSDRVCSGEE-----SIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESG  148 (238)
T ss_pred             eecccceEEEecCCcc-chHHHhhhcccc-----cceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCc
Confidence            5788888888666422 122211122222     33332 223334578888899999999998887777666676 666


Q ss_pred             eEEEEccCCCEEEEE--Eccc
Q 041215           79 PCSTFNTDGSIFAYS--VCYD   97 (136)
Q Consensus        79 ~~v~~sp~~~~l~s~--~~dd   97 (136)
                      .....+..+++++.+  +.+.
T Consensus       149 e~~ivv~sd~~i~~a~~S~d~  169 (238)
T KOG2444|consen  149 EELIVVGSDEFLKIADTSHDR  169 (238)
T ss_pred             ceeEEecCCceEEeeccccch
Confidence            666667777777766  4444

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=93.35  E-value=0.72  Score=36.07  Aligned_cols=57  Identities=11%  Similarity=0.182  Sum_probs=45.9

Q ss_pred             EEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCC-EEEEEc-CCCcEEEEeCCCcceeeec
Q 041215            9 GVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHH-TFATAG-SDGAFNFWDKDSKQRLKAM   71 (136)
Q Consensus         9 ~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~-~l~s~~-~dg~v~vwd~~~~~~~~~~   71 (136)
                      .++.+|..+.+....+.. ..     .+..++++|++. +|+..+ .++.|.++|..+++.+..+
T Consensus       280 ~V~ViD~~t~kvi~~i~v-G~-----~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       280 FLFVVDAKTGKRLRKIEL-GH-----EIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             EEEEEECCCCeEEEEEeC-CC-----ceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence            456699988888887763 34     788999999998 777666 5788999999999888776

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=93.35  E-value=0.84  Score=40.09  Aligned_cols=64  Identities=13%  Similarity=0.164  Sum_probs=47.7

Q ss_pred             cceeEEEEeCCCCEEEEEcCCCcEEEE----eCCCcceeeecccCCCceeEEEEccCCCEEEEEEcccc
Q 041215           34 YSVNSLNFHPIHHTFATAGSDGAFNFW----DKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDW   98 (136)
Q Consensus        34 ~~v~~l~~~p~~~~l~s~~~dg~v~vw----d~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd~   98 (136)
                      ..|.++.|-++...++.+..+|.|.+.    +..+... -..-.....|.+++||||+.+++...+++-
T Consensus        76 ~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~-E~VG~vd~GI~a~~WSPD~Ella~vT~~~~  143 (928)
T PF04762_consen   76 DKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEI-EIVGSVDSGILAASWSPDEELLALVTGEGN  143 (928)
T ss_pred             CcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCcee-EEEEEEcCcEEEEEECCCcCEEEEEeCCCE
Confidence            378899999999888889899998888    4433321 111123578999999999999988877653

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=93.26  E-value=0.72  Score=39.58  Aligned_cols=88  Identities=16%  Similarity=0.232  Sum_probs=59.6

Q ss_pred             ceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCC----CEEEEEcCCCcEEEEeCCCcceeeecccCCCce
Q 041215            3 SIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIH----HTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPI   78 (136)
Q Consensus         3 s~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~----~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v   78 (136)
                      ...|.|.+  +|........-+..|..     ++..++|-+..    .+|+.-....++-+|+..+|...-.+.......
T Consensus        86 D~~GrIil--~d~~~~s~~~~l~~~~~-----~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iL  158 (1062)
T KOG1912|consen   86 DISGRIIL--VDFVLASVINWLSHSND-----SVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEIL  158 (1062)
T ss_pred             cccCcEEE--EEehhhhhhhhhcCCCc-----chhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcce
Confidence            34455554  77676666666666666     88888886543    467777777889999999998877666555677


Q ss_pred             eEEEEccC-CCEEEEEEccc
Q 041215           79 PCSTFNTD-GSIFAYSVCYD   97 (136)
Q Consensus        79 ~~v~~sp~-~~~l~s~~~dd   97 (136)
                      .|+.+.|- .+.+..-+..+
T Consensus       159 s~f~~DPfd~rh~~~l~s~g  178 (1062)
T KOG1912|consen  159 SCFRVDPFDSRHFCVLGSKG  178 (1062)
T ss_pred             eeeeeCCCCcceEEEEccCc
Confidence            78888883 34443333333

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.11  E-value=0.95  Score=34.64  Aligned_cols=81  Identities=17%  Similarity=0.205  Sum_probs=55.6

Q ss_pred             EeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCC-----CcEEEEeCCCc-ceeeecccCCCceeEEEEcc
Q 041215           12 HLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSD-----GAFNFWDKDSK-QRLKAMSRCGQPIPCSTFNT   85 (136)
Q Consensus        12 ~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~d-----g~v~vwd~~~~-~~~~~~~~h~~~v~~v~~sp   85 (136)
                      .||........++....+ .|=  --.=.|||+|.+|...-.|     |.|-+||...+ +.+.+++.|.---+.|.+.+
T Consensus        95 vfD~~~~~~pv~~~s~~~-RHf--yGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~  171 (366)
T COG3490          95 VFDPNGAQEPVTLVSQEG-RHF--YGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMA  171 (366)
T ss_pred             EECCCCCcCcEEEecccC-cee--ecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEec
Confidence            466655555544443222 000  1123689999888776654     77999999864 55778999987789999999


Q ss_pred             CCCEEEEEEc
Q 041215           86 DGSIFAYSVC   95 (136)
Q Consensus        86 ~~~~l~s~~~   95 (136)
                      ||+.++.+.+
T Consensus       172 DGrtlvvanG  181 (366)
T COG3490         172 DGRTLVVANG  181 (366)
T ss_pred             CCcEEEEeCC
Confidence            9999887644

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=93.02  E-value=2.9  Score=31.27  Aligned_cols=48  Identities=10%  Similarity=0.141  Sum_probs=42.0

Q ss_pred             eEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEc
Q 041215           37 NSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFN   84 (136)
Q Consensus        37 ~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~s   84 (136)
                      ..++....|.+++++-..+.|...|..+|+.+.++.-...+|+|+||.
T Consensus       215 DGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFg  262 (310)
T KOG4499|consen  215 DGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFG  262 (310)
T ss_pred             CcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence            456667778888888888999999999999999998889999999995

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=92.97  E-value=0.2  Score=42.76  Aligned_cols=68  Identities=15%  Similarity=0.163  Sum_probs=57.0

Q ss_pred             eeCCCCcceeEEEeeeCCCCccceeEEEEeCCC------------CEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215           13 LDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIH------------HTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC   80 (136)
Q Consensus        13 ~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~------------~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~   80 (136)
                      .|..+.+.+.++.-|..     .|+.+.|.|--            -.|+++.-.|.|-+||+..+..+..+..|.+++..
T Consensus        40 VDs~s~q~iqsie~h~s-----~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qd  114 (1062)
T KOG1912|consen   40 VDSRSLQLIQSIELHQS-----AVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQD  114 (1062)
T ss_pred             EehhhhhhhhccccCcc-----ceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhh
Confidence            67777788888888888     99999997643            14667777899999999999888999999999999


Q ss_pred             EEEcc
Q 041215           81 STFNT   85 (136)
Q Consensus        81 v~~sp   85 (136)
                      ++|-+
T Consensus       115 l~W~~  119 (1062)
T KOG1912|consen  115 LCWVP  119 (1062)
T ss_pred             eeeee
Confidence            99975

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=92.90  E-value=2.6  Score=30.48  Aligned_cols=57  Identities=14%  Similarity=0.236  Sum_probs=43.4

Q ss_pred             eeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEc-cCC-CEEEEE
Q 041215           36 VNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFN-TDG-SIFAYS   93 (136)
Q Consensus        36 v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~s-p~~-~~l~s~   93 (136)
                      ...+++..+|+++++....+.|.+++.+ |+.+..+......+++++|. ++. .+++|.
T Consensus       186 pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  186 PDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             EEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred             CCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence            6789999999988888788899999987 88777776665689999994 554 455553

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=92.89  E-value=0.43  Score=40.10  Aligned_cols=81  Identities=19%  Similarity=0.312  Sum_probs=49.1

Q ss_pred             CceeceEEEEEeeCCC-CcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCc----ceeeecccCCC
Q 041215            2 GSIEGRVGVHHLDDSQ-QSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSK----QRLKAMSRCGQ   76 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~-~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~----~~~~~~~~h~~   76 (136)
                      |+..|.|.+....... ..+.+.-.++.  .|...|++++|++++..|++|...|.|.+-.+...    ...+.+....+
T Consensus        94 gt~~g~V~v~ql~~~~p~~~~~~t~~d~--~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds  171 (726)
T KOG3621|consen   94 GTASGRVSVFQLNKELPRDLDYVTPCDK--SHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDS  171 (726)
T ss_pred             hcCCceEEeehhhccCCCcceeeccccc--cCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCc
Confidence            6677888885554321 12222222222  13348999999999999999999999988776652    11223333345


Q ss_pred             ceeEEEEc
Q 041215           77 PIPCSTFN   84 (136)
Q Consensus        77 ~v~~v~~s   84 (136)
                      .|-.+.+.
T Consensus       172 ~IVQlD~~  179 (726)
T KOG3621|consen  172 EIVQLDYL  179 (726)
T ss_pred             ceEEeecc
Confidence            55555553

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=92.80  E-value=2.7  Score=30.40  Aligned_cols=80  Identities=14%  Similarity=0.115  Sum_probs=46.7

Q ss_pred             eeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCC--------CcEEEEeCCCcceeeecccCCCceeEEEEc
Q 041215           13 LDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSD--------GAFNFWDKDSKQRLKAMSRCGQPIPCSTFN   84 (136)
Q Consensus        13 ~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~d--------g~v~vwd~~~~~~~~~~~~h~~~v~~v~~s   84 (136)
                      +|..+++....+............+.+++.|+|+++++....        |.|..++.. +.. ..+...-...+.|+|+
T Consensus        65 ~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~-~~~~~~~~~pNGi~~s  142 (246)
T PF08450_consen   65 VDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV-TVVADGLGFPNGIAFS  142 (246)
T ss_dssp             EETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEE-EEEEEEESSEEEEEEE
T ss_pred             EecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeE-EEEecCcccccceEEC
Confidence            466665444443331111122367899999999988887654        446666665 433 2222333556899999


Q ss_pred             cCCCEEEEEE
Q 041215           85 TDGSIFAYSV   94 (136)
Q Consensus        85 p~~~~l~s~~   94 (136)
                      |+++.|..+.
T Consensus       143 ~dg~~lyv~d  152 (246)
T PF08450_consen  143 PDGKTLYVAD  152 (246)
T ss_dssp             TTSSEEEEEE
T ss_pred             Ccchheeecc
Confidence            9998766543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=92.02  E-value=0.28  Score=41.76  Aligned_cols=72  Identities=24%  Similarity=0.404  Sum_probs=50.5

Q ss_pred             CCcceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCc-ceeeecccCCCceeEEEEcc-CCCEEEEE
Q 041215           17 QQSKNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDSK-QRLKAMSRCGQPIPCSTFNT-DGSIFAYS   93 (136)
Q Consensus        17 ~~~~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~-~~~~~~~~h~~~v~~v~~sp-~~~~l~s~   93 (136)
                      ....-+.+.+|..     .|+.+.|+|+. ..+++++.|-.+..||+.+- ..+..+..-...-..|.|+- ++..+|+.
T Consensus       103 ~~aIef~lhghsr-----aitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlass  177 (1081)
T KOG0309|consen  103 SNAIEFVLHGHSR-----AITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASS  177 (1081)
T ss_pred             ccceEEEEecCcc-----ceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhc
Confidence            4556677889999     99999999988 68999999999999999863 23333333334445666764 33344443

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=91.82  E-value=0.2  Score=40.56  Aligned_cols=58  Identities=17%  Similarity=0.314  Sum_probs=47.4

Q ss_pred             CccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEE
Q 041215           32 EIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAY   92 (136)
Q Consensus        32 ~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s   92 (136)
                      ++.++..++|+|.|.+|++....+ |.+|....+..+.++ .| ..|..+.|+|.+.+|.+
T Consensus        31 ~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~-~~-~~V~~~~fSP~~kYL~t   88 (561)
T COG5354          31 ENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRF-RH-PDVKYLDFSPNEKYLVT   88 (561)
T ss_pred             cCcchhheeecCcchheehhhccc-eEEccccchhheeee-ec-CCceecccCcccceeee
Confidence            555899999999999998887766 899998877655555 33 57899999999999987

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=91.68  E-value=0.35  Score=39.86  Aligned_cols=59  Identities=14%  Similarity=0.283  Sum_probs=46.5

Q ss_pred             CccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEE
Q 041215           32 EIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYS   93 (136)
Q Consensus        32 ~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~   93 (136)
                      ++..-+-+.|+|.|.+|++--..| |.+|--.+-..++.| .| ..|.-+.|||..++|+|=
T Consensus       209 enWTetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF-~H-p~Vq~idfSP~EkYLVT~  267 (698)
T KOG2314|consen  209 ENWTETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRF-YH-PGVQFIDFSPNEKYLVTY  267 (698)
T ss_pred             hcceeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhc-cC-CCceeeecCCccceEEEe
Confidence            344456899999999999998877 888977665555655 34 468899999999999974

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=91.48  E-value=1.2  Score=23.98  Aligned_cols=30  Identities=27%  Similarity=0.329  Sum_probs=24.8

Q ss_pred             ceeEEEEeCCC---CEEEEEcCCCcEEEEeCCC
Q 041215           35 SVNSLNFHPIH---HTFATAGSDGAFNFWDKDS   64 (136)
Q Consensus        35 ~v~~l~~~p~~---~~l~s~~~dg~v~vwd~~~   64 (136)
                      +|.++.|+|..   .+|+-.-..+.|.++|+.+
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            68899999755   4788887789999999985

It contains a characteristic DLL sequence motif.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=91.43  E-value=0.56  Score=37.53  Aligned_cols=85  Identities=14%  Similarity=0.176  Sum_probs=51.4

Q ss_pred             ceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCE-EEEEcCCCc--EEEEeCCCcceeeecccCCCcee
Q 041215            3 SIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHT-FATAGSDGA--FNFWDKDSKQRLKAMSRCGQPIP   79 (136)
Q Consensus         3 s~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~-l~s~~~dg~--v~vwd~~~~~~~~~~~~h~~~v~   79 (136)
                      ..||...|+.+|........ +..-.+     .-..=+|+|+|+. +++.+..|.  |.+.+.+.... ..+......-.
T Consensus       257 ~rdg~~~iy~~dl~~~~~~~-Lt~~~g-----i~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~  329 (425)
T COG0823         257 SRDGSPDIYLMDLDGKNLPR-LTNGFG-----INTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNS  329 (425)
T ss_pred             CCCCCccEEEEcCCCCccee-cccCCc-----cccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCc
Confidence            56788888888887555222 332222     2235689999964 555555666  44445554433 33333322223


Q ss_pred             EEEEccCCCEEEEEE
Q 041215           80 CSTFNTDGSIFAYSV   94 (136)
Q Consensus        80 ~v~~sp~~~~l~s~~   94 (136)
                      +-.|+|+|++++..+
T Consensus       330 ~p~~SpdG~~i~~~~  344 (425)
T COG0823         330 NPVWSPDGDKIVFES  344 (425)
T ss_pred             CccCCCCCCEEEEEe
Confidence            778999999888766

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=91.24  E-value=2.1  Score=32.49  Aligned_cols=70  Identities=11%  Similarity=-0.006  Sum_probs=46.8

Q ss_pred             EEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEcc
Q 041215           11 HHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNT   85 (136)
Q Consensus        11 ~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp   85 (136)
                      +.++.+++.+...|.....     -=......+++.++.+++.|+..+..|..+..++.......+...+=+++|
T Consensus        76 Yfl~~~tGs~~w~f~~~~~-----vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~  145 (354)
T KOG4649|consen   76 YFLCVKTGSQIWNFVILET-----VKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAP  145 (354)
T ss_pred             EEEEecchhheeeeeehhh-----hccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecC
Confidence            4467788888877765443     112334467889999999999999999998877766543333333333444

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=91.05  E-value=1  Score=36.34  Aligned_cols=51  Identities=14%  Similarity=0.261  Sum_probs=34.1

Q ss_pred             CCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEcccc
Q 041215           45 HHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDW   98 (136)
Q Consensus        45 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd~   98 (136)
                      |.+|...+.+ .|.+||..++..+.++...  +|..|.|++++.+++..+.+..
T Consensus       117 G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~i  167 (443)
T PF04053_consen  117 GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDSI  167 (443)
T ss_dssp             SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-SE
T ss_pred             CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCeE
Confidence            6766666544 7999999999988888533  4899999999999998876653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=90.89  E-value=4.2  Score=31.24  Aligned_cols=81  Identities=20%  Similarity=0.231  Sum_probs=55.5

Q ss_pred             eceEEEEEeeCC-CCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcC------------------CCcEEEEeCCCc
Q 041215            5 EGRVGVHHLDDS-QQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGS------------------DGAFNFWDKDSK   65 (136)
Q Consensus         5 dG~v~i~~~d~~-~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~------------------dg~v~vwd~~~~   65 (136)
                      .|.|-+  ||.. ....+..|..|.-     ....+.+.|++..|+.+.-                  +..+-+.|..+|
T Consensus        76 ~G~IgV--yd~~~~~~ri~E~~s~GI-----GPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG  148 (305)
T PF07433_consen   76 RGVIGV--YDAARGYRRIGEFPSHGI-----GPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG  148 (305)
T ss_pred             cEEEEE--EECcCCcEEEeEecCCCc-----ChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCC
Confidence            455555  7776 5566666766655     6678999999976666651                  234445566777


Q ss_pred             ceeee--c--ccCCCceeEEEEccCCCEEEE
Q 041215           66 QRLKA--M--SRCGQPIPCSTFNTDGSIFAY   92 (136)
Q Consensus        66 ~~~~~--~--~~h~~~v~~v~~sp~~~~l~s   92 (136)
                      ..+.+  +  ..|.-.|..++++++|..++.
T Consensus       149 ~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a  179 (305)
T PF07433_consen  149 ALLEQVELPPDLHQLSIRHLAVDGDGTVAFA  179 (305)
T ss_pred             ceeeeeecCccccccceeeEEecCCCcEEEE
Confidence            77655  4  236678999999999977663

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=90.87  E-value=2.4  Score=30.79  Aligned_cols=54  Identities=9%  Similarity=0.155  Sum_probs=39.6

Q ss_pred             EeCCCCEEEEEcCCCcEEEEeCCCcceeeec-------c-------cCCCceeEEEEccCCCEEEEEE
Q 041215           41 FHPIHHTFATAGSDGAFNFWDKDSKQRLKAM-------S-------RCGQPIPCSTFNTDGSIFAYSV   94 (136)
Q Consensus        41 ~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~-------~-------~h~~~v~~v~~sp~~~~l~s~~   94 (136)
                      +...+++|++...+|.+++||+.++..+...       .       .....|..+.++.+|.-+++-+
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls   85 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS   85 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe
Confidence            4556788999999999999999987654322       1       2446778888888887666543

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=90.60  E-value=3.7  Score=33.62  Aligned_cols=60  Identities=12%  Similarity=0.161  Sum_probs=36.6

Q ss_pred             ceeEEEEeCCCCEEEEEc--CCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEccc
Q 041215           35 SVNSLNFHPIHHTFATAG--SDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYD   97 (136)
Q Consensus        35 ~v~~l~~~p~~~~l~s~~--~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd   97 (136)
                      +|...+|.|.+..++..+  ..-.+.++|+... ..+-+  ....=+.+.|+|.+++++.++-+.
T Consensus       276 pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp~~r~il~agF~n  337 (561)
T COG5354         276 PVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFSPHERYILFAGFDN  337 (561)
T ss_pred             cceeeeecccCCceeEEecccccceeecccccc-eEEec--CCcccccccccCcccEEEEecCCc
Confidence            899999999996555544  3456778887654 32222  223335556666666666554443

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=90.47  E-value=6.1  Score=29.74  Aligned_cols=93  Identities=11%  Similarity=0.165  Sum_probs=58.5

Q ss_pred             eeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeeccc----------
Q 041215            4 IEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSR----------   73 (136)
Q Consensus         4 ~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~----------   73 (136)
                      .||+=.++.+|+.+.+....+.......+...++.+-|. +|..++-.=....|-..|..+|.++..+..          
T Consensus       145 SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~  223 (264)
T PF05096_consen  145 SDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRD  223 (264)
T ss_dssp             E-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTST
T ss_pred             ECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhccccc
Confidence            478888888999888777777765544444467778887 567777776677777789999987754421          


Q ss_pred             --C---CCceeEEEEccCC-CEEEEEEccc
Q 041215           74 --C---GQPIPCSTFNTDG-SIFAYSVCYD   97 (136)
Q Consensus        74 --h---~~~v~~v~~sp~~-~~l~s~~~dd   97 (136)
                        .   .+..+.|+|.|.. ++++||--+.
T Consensus       224 ~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp  253 (264)
T PF05096_consen  224 KSRQPDDDVLNGIAYDPETDRLFVTGKLWP  253 (264)
T ss_dssp             TST--TTS-EEEEEEETTTTEEEEEETT-S
T ss_pred             ccccccCCeeEeEeEeCCCCEEEEEeCCCC
Confidence              1   3567999998765 5677764443

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=90.46  E-value=0.15  Score=42.57  Aligned_cols=91  Identities=15%  Similarity=0.195  Sum_probs=59.4

Q ss_pred             CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcC----CCcEEEEeCCCc--ce--eeec
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGS----DGAFNFWDKDSK--QR--LKAM   71 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~----dg~v~vwd~~~~--~~--~~~~   71 (136)
                      ||+.+|.|.+..+...-.........+..     .+++++|++.. ..|+.|-.    |..+.+||+.++  ..  ...|
T Consensus        75 vG~atG~I~l~s~r~~hdSs~E~tp~~ar-----~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~f  149 (783)
T KOG1008|consen   75 VGSATGNISLLSVRHPHDSSAEVTPGYAR-----PCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLF  149 (783)
T ss_pred             hccccCceEEeecCCcccccceecccccc-----cccccccccccHHHHHhhhhhhcccCCccceecccccCCCcccccc
Confidence            68889999985553322222334456777     89999998875 55555532    466999999876  11  1223


Q ss_pred             cc-CCCceeEEEEccCCCEEEEEEcc
Q 041215           72 SR-CGQPIPCSTFNTDGSIFAYSVCY   96 (136)
Q Consensus        72 ~~-h~~~v~~v~~sp~~~~l~s~~~d   96 (136)
                      .. .....++++|-.+.+++.+|...
T Consensus       150 s~~~l~gqns~cwlrd~klvlaGm~s  175 (783)
T KOG1008|consen  150 SSSTLDGQNSVCWLRDTKLVLAGMTS  175 (783)
T ss_pred             ccccccCccccccccCcchhhccccc
Confidence            23 33556688998888888887554

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.40  E-value=2  Score=35.46  Aligned_cols=63  Identities=13%  Similarity=0.268  Sum_probs=46.3

Q ss_pred             ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEccccc
Q 041215           35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWS   99 (136)
Q Consensus        35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd~~   99 (136)
                      ...|.+-..+ .+++.|+.+|.|++||-...+..-.+++-+.+|..|..+.+|.+++ |.++.|.
T Consensus       432 nFsc~aTT~s-G~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil-~Tc~tyL  494 (644)
T KOG2395|consen  432 NFSCFATTES-GYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWIL-ATCKTYL  494 (644)
T ss_pred             ccceeeecCC-ceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEE-EecccEE
Confidence            4555555544 5688899999999999744444556788899999999999999876 3444443

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=90.36  E-value=1.5  Score=31.16  Aligned_cols=63  Identities=16%  Similarity=0.163  Sum_probs=41.5

Q ss_pred             eceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeeccc
Q 041215            5 EGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSR   73 (136)
Q Consensus         5 dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~   73 (136)
                      +|+|..  +|..+++.+.....-..   .....+. ..+++..++.++.++.|..||..+|+.+-++..
T Consensus         2 ~g~l~~--~d~~tG~~~W~~~~~~~---~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~   64 (238)
T PF13360_consen    2 DGTLSA--LDPRTGKELWSYDLGPG---IGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL   64 (238)
T ss_dssp             TSEEEE--EETTTTEEEEEEECSSS---CSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC
T ss_pred             CCEEEE--EECCCCCEEEEEECCCC---CCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec
Confidence            577766  99999999888754111   0011111 223456677778889999999999988765543

...

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=89.99  E-value=0.71  Score=25.25  Aligned_cols=24  Identities=8%  Similarity=0.118  Sum_probs=20.2

Q ss_pred             CCceeEEEEccCCCEEEEEEcccc
Q 041215           75 GQPIPCSTFNTDGSIFAYSVCYDW   98 (136)
Q Consensus        75 ~~~v~~v~~sp~~~~l~s~~~dd~   98 (136)
                      ...|.+++|+|...++|.+..++-
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~   34 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGE   34 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCe
Confidence            357899999999999999877653

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=89.91  E-value=1.3  Score=34.62  Aligned_cols=68  Identities=21%  Similarity=0.379  Sum_probs=45.2

Q ss_pred             CCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeee---cccC-----CCceeEEEEccCCC-EEEEEEcccc
Q 041215           30 GSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKA---MSRC-----GQPIPCSTFNTDGS-IFAYSVCYDW   98 (136)
Q Consensus        30 ~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~---~~~h-----~~~v~~v~~sp~~~-~l~s~~~dd~   98 (136)
                      ..|.|.|++++++.|+..+.++ +|-.|.+|+++-......   +..+     .-.|++..|+|... +++.+++-+-
T Consensus       161 NaHtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGt  237 (433)
T KOG1354|consen  161 NAHTYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGT  237 (433)
T ss_pred             ccceeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCc
Confidence            6677899999999999888776 567799999864322222   2222     34677888888654 5555544433

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=89.86  E-value=2.7  Score=32.78  Aligned_cols=64  Identities=9%  Similarity=0.200  Sum_probs=45.3

Q ss_pred             eceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCC-EEEEE-cCCCcEEEEeCCCcceeeecccC
Q 041215            5 EGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHH-TFATA-GSDGAFNFWDKDSKQRLKAMSRC   74 (136)
Q Consensus         5 dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~-~l~s~-~~dg~v~vwd~~~~~~~~~~~~h   74 (136)
                      |+---||.+|..+++.+..+.. ..     ++.+|..+.+.. +|++. ..++.|.+||..+|+.+..+.+-
T Consensus       266 dpgteVWv~D~~t~krv~Ri~l-~~-----~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~l  331 (342)
T PF06433_consen  266 DPGTEVWVYDLKTHKRVARIPL-EH-----PIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQL  331 (342)
T ss_dssp             S-EEEEEEEETTTTEEEEEEEE-EE-----EESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---
T ss_pred             CCceEEEEEECCCCeEEEEEeC-CC-----ccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhcc
Confidence            3445679999999999888763 34     677999998884 66554 45789999999999888777543

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=89.24  E-value=1.9  Score=33.71  Aligned_cols=89  Identities=10%  Similarity=0.035  Sum_probs=59.8

Q ss_pred             CceeceEEEEEeeCCC-CcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCC----CcceeeecccCCC
Q 041215            2 GSIEGRVGVHHLDDSQ-QSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKD----SKQRLKAMSRCGQ   76 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~-~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~----~~~~~~~~~~h~~   76 (136)
                      .|.|.++++|+=.... .++. ...-...     +++++.+++....|+.+-..|.+.-+.+.    ....+..+..|.+
T Consensus        42 ~s~drtvrv~lkrds~q~wps-I~~~mP~-----~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~  115 (404)
T KOG1409|consen   42 VSEDRTVRVWLKRDSGQYWPS-IYHYMPS-----PCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQA  115 (404)
T ss_pred             ccccceeeeEEeccccccCch-hhhhCCC-----CceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhc
Confidence            4667777775432211 1111 1112345     88999999999999999888988877543    3344556678899


Q ss_pred             ceeEEEEccCCCEEEEEEcc
Q 041215           77 PIPCSTFNTDGSIFAYSVCY   96 (136)
Q Consensus        77 ~v~~v~~sp~~~~l~s~~~d   96 (136)
                      .+..+-|+....++++.+.|
T Consensus       116 ~v~~~if~~~~e~V~s~~~d  135 (404)
T KOG1409|consen  116 RVSAIVFSLTHEWVLSTGKD  135 (404)
T ss_pred             ceeeEEecCCceeEEEeccc
Confidence            99999999888887776554

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=89.04  E-value=6.8  Score=32.88  Aligned_cols=86  Identities=17%  Similarity=0.245  Sum_probs=48.3

Q ss_pred             eEEEEEeeCC---CCcceeEEEeeeCCCCccce--eEEEEeCCCCEEEEEcCCCcEEEEeCC--CcceeeecccCCCcee
Q 041215            7 RVGVHHLDDS---QQSKNFTFKCHRDGSEIYSV--NSLNFHPIHHTFATAGSDGAFNFWDKD--SKQRLKAMSRCGQPIP   79 (136)
Q Consensus         7 ~v~i~~~d~~---~~~~~~~l~~h~~~~~~~~v--~~l~~~p~~~~l~s~~~dg~v~vwd~~--~~~~~~~~~~h~~~v~   79 (136)
                      .|.+|.+-..   .++.+..-.++-+  +.++|  ..+.|||....|+.=.....--++++.  +......+ ...+.|+
T Consensus        83 hVtVWqL~~s~~e~~K~l~sQtcEi~--e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~Ih  159 (671)
T PF15390_consen   83 HVTVWQLCPSTTERNKLLMSQTCEIR--EPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIH  159 (671)
T ss_pred             eEEEEEeccCccccccceeeeeeecc--CCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEE
Confidence            4667666543   2344444444432  23343  478999998654433333322233432  33333334 4458999


Q ss_pred             EEEEccCCCEEEEEEc
Q 041215           80 CSTFNTDGSIFAYSVC   95 (136)
Q Consensus        80 ~v~~sp~~~~l~s~~~   95 (136)
                      |.+|.+||+.|+.|-+
T Consensus       160 CACWT~DG~RLVVAvG  175 (671)
T PF15390_consen  160 CACWTKDGQRLVVAVG  175 (671)
T ss_pred             EEEecCcCCEEEEEeC
Confidence            9999999997776643

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=89.04  E-value=2.4  Score=33.24  Aligned_cols=57  Identities=12%  Similarity=0.137  Sum_probs=43.6

Q ss_pred             EEEEeeCC-CCcceeEEEeeeC----------CCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCc
Q 041215            9 GVHHLDDS-QQSKNFTFKCHRD----------GSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSK   65 (136)
Q Consensus         9 ~i~~~d~~-~~~~~~~l~~h~~----------~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~   65 (136)
                      .+.+||.. ..++..+++.|..          ..++|.=..++|+.++..+++|+....+++++...|
T Consensus       294 tvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g  361 (433)
T KOG1354|consen  294 TVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG  361 (433)
T ss_pred             eeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence            34457773 4667777777753          566666678999999999999999999999996654

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=88.95  E-value=1.2  Score=38.11  Aligned_cols=59  Identities=12%  Similarity=0.210  Sum_probs=46.4

Q ss_pred             ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCc---------------ceeeecccCCCceeEEEEccCCCEEEEE
Q 041215           35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSK---------------QRLKAMSRCGQPIPCSTFNTDGSIFAYS   93 (136)
Q Consensus        35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~---------------~~~~~~~~h~~~v~~v~~sp~~~~l~s~   93 (136)
                      ...|+.|+....++++|+.||.+++.-+.+.               ..-+++.+|+..|.-+.|+...+-+-|+
T Consensus        16 kL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtS   89 (1189)
T KOG2041|consen   16 KLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTS   89 (1189)
T ss_pred             eEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccccccccc
Confidence            6789999999999999999999998755321               0114667899999999999877666554

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=88.03  E-value=0.29  Score=39.32  Aligned_cols=21  Identities=14%  Similarity=0.067  Sum_probs=16.0

Q ss_pred             CCCceeEEEEccCCCEEEEEE
Q 041215           74 CGQPIPCSTFNTDGSIFAYSV   94 (136)
Q Consensus        74 h~~~v~~v~~sp~~~~l~s~~   94 (136)
                      |..+|.++.++|.+..+++..
T Consensus       143 H~sPV~~i~y~qa~Ds~vSiD  163 (558)
T KOG0882|consen  143 HFSPVKKIRYNQAGDSAVSID  163 (558)
T ss_pred             ccCceEEEEeeccccceeecc
Confidence            668888888888887777544

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=87.94  E-value=4.4  Score=36.41  Aligned_cols=63  Identities=11%  Similarity=0.178  Sum_probs=47.7

Q ss_pred             ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEcccc
Q 041215           35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDW   98 (136)
Q Consensus        35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd~   98 (136)
                      .|.++.|..+..-++.+...|.|.+-|.++... -........|.+++||||+.+++...+...
T Consensus        70 ~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-eivg~vd~GI~aaswS~Dee~l~liT~~~t  132 (1265)
T KOG1920|consen   70 EIVSVQFLADTNSICVITALGDIILVDPETLEL-EIVGNVDNGISAASWSPDEELLALITGRQT  132 (1265)
T ss_pred             ceEEEEEecccceEEEEecCCcEEEEcccccce-eeeeeccCceEEEeecCCCcEEEEEeCCcE
Confidence            688889988888788888888888878776532 222234578999999999999888777443

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=87.72  E-value=5.3  Score=30.83  Aligned_cols=61  Identities=11%  Similarity=0.084  Sum_probs=39.3

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeec
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAM   71 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~   71 (136)
                      ++.+|.+.  .+|..+++.+..+.....     .......  ++..++.++.++.+..+|..+|+.+-..
T Consensus        71 ~~~~g~v~--a~d~~tG~~~W~~~~~~~-----~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~  131 (377)
T TIGR03300        71 ADADGTVV--ALDAETGKRLWRVDLDER-----LSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRA  131 (377)
T ss_pred             ECCCCeEE--EEEccCCcEeeeecCCCC-----cccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeee
Confidence            44556554  478888888776553322     1122222  3567777888999999999998876544

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=87.37  E-value=0.74  Score=39.68  Aligned_cols=54  Identities=13%  Similarity=0.134  Sum_probs=38.0

Q ss_pred             CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeC
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDK   62 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~   62 (136)
                      |||.+|.|++  ||.-.......|.+...     +|.+|+.+.||+++++... .+|.++++
T Consensus       593 vgs~~G~IRL--yd~~g~~AKT~lp~lG~-----pI~~iDvt~DGkwilaTc~-tyLlLi~t  646 (794)
T PF08553_consen  593 VGSNKGDIRL--YDRLGKRAKTALPGLGD-----PIIGIDVTADGKWILATCK-TYLLLIDT  646 (794)
T ss_pred             EEeCCCcEEe--ecccchhhhhcCCCCCC-----CeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence            6899999998  77433333344556666     9999999999997766543 45666664

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=87.04  E-value=1.6  Score=38.05  Aligned_cols=34  Identities=15%  Similarity=0.336  Sum_probs=30.1

Q ss_pred             CCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCC
Q 041215           31 SEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDS   64 (136)
Q Consensus        31 ~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~   64 (136)
                      +|.+++..+.|+++|..++++..-|.|.+|.+..
T Consensus        99 th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen   99 THPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV  132 (1416)
T ss_pred             CCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence            3444999999999999999999999999999864

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=86.70  E-value=3.7  Score=29.90  Aligned_cols=47  Identities=13%  Similarity=0.136  Sum_probs=35.0

Q ss_pred             CEEEEEcCCCcEEEEeCCC--cceeeecccCCCceeEEEEccCCCEEEEE
Q 041215           46 HTFATAGSDGAFNFWDKDS--KQRLKAMSRCGQPIPCSTFNTDGSIFAYS   93 (136)
Q Consensus        46 ~~l~s~~~dg~v~vwd~~~--~~~~~~~~~h~~~v~~v~~sp~~~~l~s~   93 (136)
                      ..|+.+.....|.+|++.+  .....+|+.- +.|..+.++..|++++|=
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTl   77 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTL   77 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEE
Confidence            4444445567899999883  3445666544 889999999999999984

>PRK02888 nitrous-oxide reductase; Validated

Probab=86.47  E-value=11  Score=31.84  Aligned_cols=40  Identities=10%  Similarity=-0.017  Sum_probs=25.7

Q ss_pred             CcEEEEeCCC----c-ceeeecccCCCceeEEEEccCCCEEEEEEc
Q 041215           55 GAFNFWDKDS----K-QRLKAMSRCGQPIPCSTFNTDGSIFAYSVC   95 (136)
Q Consensus        55 g~v~vwd~~~----~-~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~   95 (136)
                      +.|.+.|..+    + ..+..+ .-....+.|.++|||+++..++.
T Consensus       296 n~V~VID~~t~~~~~~~v~~yI-PVGKsPHGV~vSPDGkylyVank  340 (635)
T PRK02888        296 SKVPVVDGRKAANAGSALTRYV-PVPKNPHGVNTSPDGKYFIANGK  340 (635)
T ss_pred             CEEEEEECCccccCCcceEEEE-ECCCCccceEECCCCCEEEEeCC
Confidence            3466666665    2 233333 33456688999999998887654

>PRK02888 nitrous-oxide reductase; Validated

Probab=85.79  E-value=8.9  Score=32.41  Aligned_cols=58  Identities=14%  Similarity=0.161  Sum_probs=39.4

Q ss_pred             ceeEEEEeCCCCEEEEEc-CCCcEEEEeCCCcce------------eeecccCCCceeEEEEccCCCEEEEE
Q 041215           35 SVNSLNFHPIHHTFATAG-SDGAFNFWDKDSKQR------------LKAMSRCGQPIPCSTFNTDGSIFAYS   93 (136)
Q Consensus        35 ~v~~l~~~p~~~~l~s~~-~dg~v~vwd~~~~~~------------~~~~~~h~~~v~~v~~sp~~~~l~s~   93 (136)
                      ....+.++|||.+++.++ .+..|.+.|+.+...            +.+..-..+| ...+|.++|..+.|-
T Consensus       322 sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP-LHTaFDg~G~aytsl  392 (635)
T PRK02888        322 NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP-LHTAFDGRGNAYTTL  392 (635)
T ss_pred             CccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCc-ceEEECCCCCEEEeE
Confidence            678999999997655555 578999999987542            3333333333 457888888755543

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=85.53  E-value=3.4  Score=21.01  Aligned_cols=40  Identities=5%  Similarity=-0.008  Sum_probs=24.7

Q ss_pred             CCCCEEEE-EcCCCcEEEEeCCCcceeeecccCCCceeEEEE
Q 041215           43 PIHHTFAT-AGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTF   83 (136)
Q Consensus        43 p~~~~l~s-~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~   83 (136)
                      |+++.|+. ...++.|.++|..++..+..+... .....++|
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence            45654444 445788999999888777666442 33334444

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=85.32  E-value=1.2  Score=38.07  Aligned_cols=77  Identities=12%  Similarity=0.182  Sum_probs=56.2

Q ss_pred             CceeceEEEEEeeCCC-CcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCc-ceeeecccCCCcee
Q 041215            2 GSIEGRVGVHHLDDSQ-QSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSK-QRLKAMSRCGQPIP   79 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~-~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~-~~~~~~~~h~~~v~   79 (136)
                      +|.|-.+..  ||.++ -.+.+.+...+.     ....+.|+.....+...+....|++||..-| ..++.+.+|-..|+
T Consensus       133 csvdt~vh~--wd~rSp~~p~ys~~~w~s-----~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn  205 (1081)
T KOG0309|consen  133 CSVDTYVHA--WDMRSPHRPFYSTSSWRS-----AASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVN  205 (1081)
T ss_pred             cccccccee--eeccCCCcceeeeecccc-----cCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeee
Confidence            345555554  77764 356777777777     7889999877655555566677999999864 56788888888888


Q ss_pred             EEEEcc
Q 041215           80 CSTFNT   85 (136)
Q Consensus        80 ~v~~sp   85 (136)
                      .++|+.
T Consensus       206 ~~~fnr  211 (1081)
T KOG0309|consen  206 SIDFNR  211 (1081)
T ss_pred             hHHHhh
Confidence            888864

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=84.13  E-value=0.32  Score=42.33  Aligned_cols=76  Identities=21%  Similarity=0.269  Sum_probs=56.5

Q ss_pred             CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCC--CcEEEEeCCC-cceeeecccCCCc
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSD--GAFNFWDKDS-KQRLKAMSRCGQP   77 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~d--g~v~vwd~~~-~~~~~~~~~h~~~   77 (136)
                      ||+-.|.|.+  |++.+|.......||.+     +|+-+--+-+|..+.+.+..  ...-+|++.. +...+.|.+.   
T Consensus      1118 vG~~~Geik~--~nv~sG~~e~s~ncH~S-----avT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~ed--- 1187 (1516)
T KOG1832|consen 1118 VGSHAGEIKI--FNVSSGSMEESVNCHQS-----AVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFDED--- 1187 (1516)
T ss_pred             eeeccceEEE--EEccCcccccccccccc-----ccccccccCCcceeeeeccccCchHHHhccccccCcccccccc---
Confidence            5778888877  88899999999999999     99999888888655554443  3577999764 5555666443   


Q ss_pred             eeEEEEccCC
Q 041215           78 IPCSTFNTDG   87 (136)
Q Consensus        78 v~~v~~sp~~   87 (136)
                       .++.|+..-
T Consensus      1188 -~~vkFsn~~ 1196 (1516)
T KOG1832|consen 1188 -KAVKFSNSL 1196 (1516)
T ss_pred             -ceeehhhhH
Confidence             677787653

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=83.94  E-value=19  Score=28.23  Aligned_cols=77  Identities=12%  Similarity=0.102  Sum_probs=48.8

Q ss_pred             EEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEc----------CCCcEEEEeCCCcceeeecccC---C
Q 041215            9 GVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAG----------SDGAFNFWDKDSKQRLKAMSRC---G   75 (136)
Q Consensus         9 ~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~----------~dg~v~vwd~~~~~~~~~~~~h---~   75 (136)
                      +++.+|..+++.+-++..-       -...+.++|+++.+++++          ....|.+||..+.....++.-.   .
T Consensus        18 rv~viD~d~~k~lGmi~~g-------~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R   90 (342)
T PF06433_consen   18 RVYVIDADSGKLLGMIDTG-------FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPR   90 (342)
T ss_dssp             EEEEEETTTTEEEEEEEEE-------SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B
T ss_pred             eEEEEECCCCcEEEEeecc-------cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcch
Confidence            5566998888877776542       223467899998877755          2456999999987666543322   1


Q ss_pred             ----CceeEEEEccCCCEEEE
Q 041215           76 ----QPIPCSTFNTDGSIFAY   92 (136)
Q Consensus        76 ----~~v~~v~~sp~~~~l~s   92 (136)
                          ...+.++++.+++++..
T Consensus        91 ~~~~~~~~~~~ls~dgk~~~V  111 (342)
T PF06433_consen   91 AQVVPYKNMFALSADGKFLYV  111 (342)
T ss_dssp             --BS--GGGEEE-TTSSEEEE
T ss_pred             heecccccceEEccCCcEEEE
Confidence                22245677888877664

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=83.86  E-value=3  Score=34.11  Aligned_cols=36  Identities=19%  Similarity=0.292  Sum_probs=27.3

Q ss_pred             eeEEEEeC----CCCEEEEEcCCCcEEEEeCCCcceeeec
Q 041215           36 VNSLNFHP----IHHTFATAGSDGAFNFWDKDSKQRLKAM   71 (136)
Q Consensus        36 v~~l~~~p----~~~~l~s~~~dg~v~vwd~~~~~~~~~~   71 (136)
                      +..++++.    +..+|++.+.|+.+++||+.++.++.+.
T Consensus       217 ~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  217 AASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred             cceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence            44555655    5589999999999999999999885543

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=83.36  E-value=12  Score=31.69  Aligned_cols=80  Identities=15%  Similarity=0.223  Sum_probs=52.3

Q ss_pred             EeeCCCCcceeEEE-eeeCCCCccceeEEEE--eCCCCEEEEEcCCCcEEEEeC-----CC-c---ceee--ecccCC-C
Q 041215           12 HLDDSQQSKNFTFK-CHRDGSEIYSVNSLNF--HPIHHTFATAGSDGAFNFWDK-----DS-K---QRLK--AMSRCG-Q   76 (136)
Q Consensus        12 ~~d~~~~~~~~~l~-~h~~~~~~~~v~~l~~--~p~~~~l~s~~~dg~v~vwd~-----~~-~---~~~~--~~~~h~-~   76 (136)
                      +||.+.+...+.-. ...+     .|.+++|  .|+++.+.+.+....|.++.-     .+ +   ..+.  .+..+. .
T Consensus        55 IWD~~~~~lE~~~~f~~~~-----~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h  129 (631)
T PF12234_consen   55 IWDTRSGVLEYEESFSEDD-----PIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPH  129 (631)
T ss_pred             EEEcCCcEEEEeeeecCCC-----ceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCC
Confidence            47776555333321 2244     8999999  488899999999998888742     11 1   1222  223443 6


Q ss_pred             ceeEEEEccCCCEEEEEEcc
Q 041215           77 PIPCSTFNTDGSIFAYSVCY   96 (136)
Q Consensus        77 ~v~~v~~sp~~~~l~s~~~d   96 (136)
                      +|....|.++|.+++.++..
T Consensus       130 ~Igds~Wl~~G~LvV~sGNq  149 (631)
T PF12234_consen  130 PIGDSIWLKDGTLVVGSGNQ  149 (631)
T ss_pred             CccceeEecCCeEEEEeCCE
Confidence            89999999999888765543

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=83.08  E-value=11  Score=28.06  Aligned_cols=58  Identities=16%  Similarity=0.261  Sum_probs=35.1

Q ss_pred             ceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCcceeeecccCC---------CceeEEEEccCCCEEEEE
Q 041215           35 SVNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQRLKAMSRCG---------QPIPCSTFNTDGSIFAYS   93 (136)
Q Consensus        35 ~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~---------~~v~~v~~sp~~~~l~s~   93 (136)
                      .++++.++|.. ++++-...+..|..+| .+|..+..+.--.         .+.-.|+|.++|.+++++
T Consensus       172 d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs  239 (248)
T PF06977_consen  172 DLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS  239 (248)
T ss_dssp             ---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred             cccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence            57899999887 6777777788888888 5566655443222         355689999999988865

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=82.32  E-value=13  Score=28.47  Aligned_cols=61  Identities=10%  Similarity=0.003  Sum_probs=41.5

Q ss_pred             ceeEEEEeCCCCEEEEEcC-----C----CcEEEEeCC-CcceeeecccCCCceeEEEEccCCCEEEEEEc
Q 041215           35 SVNSLNFHPIHHTFATAGS-----D----GAFNFWDKD-SKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVC   95 (136)
Q Consensus        35 ~v~~l~~~p~~~~l~s~~~-----d----g~v~vwd~~-~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~   95 (136)
                      ..+.+...|+|.+.++...     .    ..-.+|.+. .+..+..+..+-..-+.|+||||++.+..+-.
T Consensus       112 r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT  182 (307)
T COG3386         112 RPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADT  182 (307)
T ss_pred             CCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeC
Confidence            4578888999988777665     1    112455555 46666666565566689999999987665543

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.25  E-value=12  Score=32.76  Aligned_cols=58  Identities=16%  Similarity=0.318  Sum_probs=41.6

Q ss_pred             ceeEEEEeCCCCE-EEEEcCCCcEEEEeCCCcc-eeeecccCCCceeEEEEccCCCEEEEE
Q 041215           35 SVNSLNFHPIHHT-FATAGSDGAFNFWDKDSKQ-RLKAMSRCGQPIPCSTFNTDGSIFAYS   93 (136)
Q Consensus        35 ~v~~l~~~p~~~~-l~s~~~dg~v~vwd~~~~~-~~~~~~~h~~~v~~v~~sp~~~~l~s~   93 (136)
                      +|+++.+.-++.. ++.+. ...|.+|.+.... ....+..|+..++|..|++....++.|
T Consensus       173 pITgL~~~~d~~s~lFv~T-t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca  232 (933)
T KOG2114|consen  173 PITGLALRSDGKSVLFVAT-TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICA  232 (933)
T ss_pred             CceeeEEecCCceeEEEEe-cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEe
Confidence            8999999888854 33333 3458888887443 345577888999999999877644434

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=82.12  E-value=5.9  Score=32.17  Aligned_cols=85  Identities=13%  Similarity=0.236  Sum_probs=58.5

Q ss_pred             eeCCCC--cceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCC------cce---------eeecccCC
Q 041215           13 LDDSQQ--SKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDS------KQR---------LKAMSRCG   75 (136)
Q Consensus        13 ~d~~~~--~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~------~~~---------~~~~~~h~   75 (136)
                      +|....  +..+.-+-|..     +|.++.+.|-+...++....|.|..|..+.      ...         +..+.-..
T Consensus       127 vD~~~d~~q~~~fkklH~s-----PV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~K  201 (558)
T KOG0882|consen  127 VDGFGDFCQDGYFKKLHFS-----PVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAK  201 (558)
T ss_pred             ECCcCCcCccceecccccC-----ceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccc
Confidence            665432  33344345788     999999999999999999999999998762      111         12222345


Q ss_pred             CceeEEEEccCCCEEEEEEcccccccc
Q 041215           76 QPIPCSTFNTDGSIFAYSVCYDWSKGA  102 (136)
Q Consensus        76 ~~v~~v~~sp~~~~l~s~~~dd~~~~~  102 (136)
                      ....++.|+|++..+++-..|--..++
T Consensus       202 t~pts~Efsp~g~qistl~~DrkVR~F  228 (558)
T KOG0882|consen  202 TEPTSFEFSPDGAQISTLNPDRKVRGF  228 (558)
T ss_pred             cCccceEEccccCcccccCcccEEEEE
Confidence            677899999999988876554433333

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=82.12  E-value=11  Score=24.49  Aligned_cols=54  Identities=13%  Similarity=0.230  Sum_probs=36.4

Q ss_pred             EEeCCC-CEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEccc
Q 041215           40 NFHPIH-HTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYD   97 (136)
Q Consensus        40 ~~~p~~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd   97 (136)
                      .|..+| ..|+.|+.|..|++|+-.  ..+.++... +.|.+++-...+ .++.+...+
T Consensus         9 d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~-~~v~~L~~~~~~-~F~Y~l~NG   63 (111)
T PF14783_consen    9 DFDGDGENELLVGSDDFEIRVFKGD--EIVAEITET-DKVTSLCSLGGG-RFAYALANG   63 (111)
T ss_pred             ecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecc-cceEEEEEcCCC-EEEEEecCC
Confidence            334455 689999999999999764  466777555 566776666554 456554444

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=82.03  E-value=4.6  Score=32.39  Aligned_cols=49  Identities=14%  Similarity=0.099  Sum_probs=39.0

Q ss_pred             eeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccC
Q 041215           21 NFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRC   74 (136)
Q Consensus        21 ~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h   74 (136)
                      .+.|...+.     .+.++..+|.+++.++.+.-|.|.++|+.++..+.-+.+.
T Consensus       300 r~~l~D~~R-----~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGY  348 (415)
T PF14655_consen  300 RFGLPDSKR-----EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGY  348 (415)
T ss_pred             EEeeccCCc-----eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccC
Confidence            344555555     6889999999999888888899999999998877766665

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=82.00  E-value=21  Score=27.40  Aligned_cols=79  Identities=14%  Similarity=0.136  Sum_probs=44.1

Q ss_pred             EEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcC-CCcEEEEeCCC--cce-----eeecccCCCceeE
Q 041215            9 GVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGS-DGAFNFWDKDS--KQR-----LKAMSRCGQPIPC   80 (136)
Q Consensus         9 ~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~-dg~v~vwd~~~--~~~-----~~~~~~h~~~v~~   80 (136)
                      .+|.+|+ .+.....+..+-.     -.+.|+|+|++..|..+.. .+.|.-|++..  +..     ...+....+..-.
T Consensus       144 ~lyr~~p-~g~~~~l~~~~~~-----~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG  217 (307)
T COG3386         144 SLYRVDP-DGGVVRLLDDDLT-----IPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDG  217 (307)
T ss_pred             eEEEEcC-CCCEEEeecCcEE-----ecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCc
Confidence            4555554 2333333333333     5589999999965555544 46788777652  211     1122223355566


Q ss_pred             EEEccCCCEEEEE
Q 041215           81 STFNTDGSIFAYS   93 (136)
Q Consensus        81 v~~sp~~~~l~s~   93 (136)
                      ++...+|.+.+++
T Consensus       218 ~~vDadG~lw~~a  230 (307)
T COG3386         218 MAVDADGNLWVAA  230 (307)
T ss_pred             eEEeCCCCEEEec
Confidence            7777777777533

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=81.78  E-value=16  Score=28.60  Aligned_cols=60  Identities=15%  Similarity=0.318  Sum_probs=39.5

Q ss_pred             eeEEEEeCCCCEEEEE-cCCC----cEEEEeCCCcceeee-cccCCCceeEEEEccCCCEEEEEEccc
Q 041215           36 VNSLNFHPIHHTFATA-GSDG----AFNFWDKDSKQRLKA-MSRCGQPIPCSTFNTDGSIFAYSVCYD   97 (136)
Q Consensus        36 v~~l~~~p~~~~l~s~-~~dg----~v~vwd~~~~~~~~~-~~~h~~~v~~v~~sp~~~~l~s~~~dd   97 (136)
                      +...+++|++++++-+ +..|    .++++|+.++..+.. +...  ....+.|.+++..|....-+.
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~  191 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDE  191 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECST
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCc
Confidence            4467889999765533 4333    499999999866542 2221  123499999998777665544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=81.63  E-value=14  Score=30.49  Aligned_cols=75  Identities=13%  Similarity=0.146  Sum_probs=46.1

Q ss_pred             EEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCce-eEEEEccCCCE
Q 041215           11 HHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPI-PCSTFNTDGSI   89 (136)
Q Consensus        11 ~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v-~~v~~sp~~~~   89 (136)
                      .-+|..+++..........     ..... +.-.+.+++.++.+|.++++|..+|+.+.++....... .=|.|.-+|++
T Consensus       444 ~AiD~~tGk~~W~~~~~~p-----~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~~a~P~ty~~~G~q  517 (527)
T TIGR03075       444 IAWDPITGKIVWEHKEDFP-----LWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSGIVGPPVTYEQDGKQ  517 (527)
T ss_pred             EEEeCCCCceeeEecCCCC-----CCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeCCCCceecCEEEEeCCEE
Confidence            4488888888877653211     11121 22245677888889999999999999987775442111 12344457764


Q ss_pred             EE
Q 041215           90 FA   91 (136)
Q Consensus        90 l~   91 (136)
                      ++
T Consensus       518 Yv  519 (527)
T TIGR03075       518 YV  519 (527)
T ss_pred             EE
Confidence            43

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PRK13616 lipoprotein LpqB; Provisional

Probab=81.51  E-value=11  Score=31.72  Aligned_cols=57  Identities=14%  Similarity=0.078  Sum_probs=34.5

Q ss_pred             ceeEEEEeCCCCEEEEEcCC-CcEEEE-----------eCCCcceeeecccCCCceeEEEEccCCCEEEEEE
Q 041215           35 SVNSLNFHPIHHTFATAGSD-GAFNFW-----------DKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSV   94 (136)
Q Consensus        35 ~v~~l~~~p~~~~l~s~~~d-g~v~vw-----------d~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~   94 (136)
                      ..+.-+|+|+|..|...... ..+++.           ++..+....   .....|..+.|||||..++.-.
T Consensus       398 ~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~  466 (591)
T PRK13616        398 SLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII  466 (591)
T ss_pred             CCCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE
Confidence            46778999998766665432 222232           333222211   2246799999999999766543

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=81.05  E-value=26  Score=27.88  Aligned_cols=53  Identities=11%  Similarity=0.110  Sum_probs=37.6

Q ss_pred             ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccC-CCceeEEEEccCC
Q 041215           35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRC-GQPIPCSTFNTDG   87 (136)
Q Consensus        35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h-~~~v~~v~~sp~~   87 (136)
                      ++..|+++|++++++.-..+|.+.+....-.+...++... ......|.|.-+.
T Consensus       218 ~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d  271 (410)
T PF04841_consen  218 PIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND  271 (410)
T ss_pred             CeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence            7999999999999999999999888775544444444333 3455666665443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=80.40  E-value=23  Score=27.25  Aligned_cols=85  Identities=18%  Similarity=0.176  Sum_probs=44.1

Q ss_pred             eceEEEEEeeCCCCcceeEEEeeeCCCCccceeE-EEEeCCCC-EEEEEcCC--Cc--EEEEeCCCcceeeecccCCCce
Q 041215            5 EGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNS-LNFHPIHH-TFATAGSD--GA--FNFWDKDSKQRLKAMSRCGQPI   78 (136)
Q Consensus         5 dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~-l~~~p~~~-~l~s~~~d--g~--v~vwd~~~~~~~~~~~~h~~~v   78 (136)
                      ||--.|+.++...+... .+....-     .|.. +.+.+++. .++++..+  ..  |..-++..+..+..+......-
T Consensus       257 ~G~~hly~~~~~~~~~~-~lT~G~~-----~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~  330 (353)
T PF00930_consen  257 DGYRHLYLYDLDGGKPR-QLTSGDW-----EVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDH  330 (353)
T ss_dssp             TSSEEEEEEETTSSEEE-ESS-SSS------EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTT
T ss_pred             CCCcEEEEEccccccee-ccccCce-----eecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCc
Confidence            44445555555444322 2222222     5644 67788774 55566653  23  4444555233455555443333


Q ss_pred             eEEEEccCCCEEEEEEc
Q 041215           79 PCSTFNTDGSIFAYSVC   95 (136)
Q Consensus        79 ~~v~~sp~~~~l~s~~~   95 (136)
                      ..+.|||++++++..++
T Consensus       331 ~~~~~Spdg~y~v~~~s  347 (353)
T PF00930_consen  331 YSASFSPDGKYYVDTYS  347 (353)
T ss_dssp             EEEEE-TTSSEEEEEEE
T ss_pred             eEEEECCCCCEEEEEEc
Confidence            69999999998775543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	136
3mmy_A	368	Structural And Functional Analysis Of The Interacti		1e-30
1u4c_A	349	Structure Of Spindle Checkpoint Protein Bub3 Length		2e-10
2i3s_A	349	Bub3 Complex With Bub1 Glebs Motif Length = 349		2e-10
1yfq_A	342	High Resolution S. Cerevisiae Bub3 Mitotic Checkpoi		2e-10
2i3t_A	341	Bub3 Complex With Mad3 (Bubr1) Glebs Motif Length =		2e-10

>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction Between The Nucleoporin Nup98 And The Mrna Export Factor Rae1 Length = 368

Iteration: 1
 Score =  128 bits (321), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 67/137 (48%), Positives = 88/137 (64%), Gaps = 12/137 (8%)
Query: 1   VGSIEGRVGVHHLDDSQQSK-NFTFKCHRDG-------SEIYSVNSLNFHPIHHTFATAG 52
           +GSIEGRV +H+++    +K NFTFKCHR          +IY+VN + FHP+H T AT G
Sbjct: 233 LGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVG 292
Query: 53  SDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAENHNPATAKT 112
           SDG F+FWDKD++ +LK   +  QPI    FN +G+IFAY+  YDWSKG E +NP   K 
Sbjct: 293 SDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQ-KKN 351
Query: 113 YIYLHLPQETEVKGKPR 129
           YI+L    E   + KPR
Sbjct: 352 YIFLRNAAE---ELKPR 365

>pdb|1U4C|A Chain A, Structure Of Spindle Checkpoint Protein Bub3 Length = 349

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 53/110 (48%), Gaps = 23/110 (20%)
Query: 3   SIEGRVGVHHLDDS----QQSKNFTFKCHR----DGSEIYSVNSLNFHPIHHTFATAGSD 54
           SI+GRV V   DD       SK F F+CHR    D +  Y VNS+ F P H    TAGSD
Sbjct: 213 SIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSD 272
Query: 55  GAFNFWDKDSKQRLKAMSR----------CGQPIPC-----STFNTDGSI 89
           G  + W+  +++++K  ++          C   I C      TF T+ +I
Sbjct: 273 GIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAAI 322

>pdb|2I3S|A Chain A, Bub3 Complex With Bub1 Glebs Motif Length = 349

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 53/110 (48%), Gaps = 23/110 (20%)
Query: 3   SIEGRVGVHHLDDS----QQSKNFTFKCHR----DGSEIYSVNSLNFHPIHHTFATAGSD 54
           SI+GRV V   DD       SK F F+CHR    D +  Y VNS+ F P H    TAGSD
Sbjct: 213 SIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSD 272
Query: 55  GAFNFWDKDSKQRLKAMSR----------CGQPIPC-----STFNTDGSI 89
           G  + W+  +++++K  ++          C   I C      TF T+ +I
Sbjct: 273 GIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAAI 322

>pdb|1YFQ|A Chain A, High Resolution S. Cerevisiae Bub3 Mitotic Checkpoint Protein Length = 342

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 53/110 (48%), Gaps = 23/110 (20%)
Query: 3   SIEGRVGVHHLDDS----QQSKNFTFKCHR----DGSEIYSVNSLNFHPIHHTFATAGSD 54
           SI+GRV V   DD       SK F F+CHR    D +  Y VNS+ F P H    TAGSD
Sbjct: 213 SIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSD 272
Query: 55  GAFNFWDKDSKQRLKAMSR----------CGQPIPC-----STFNTDGSI 89
           G  + W+  +++++K  ++          C   I C      TF T+ +I
Sbjct: 273 GIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAAI 322

>pdb|2I3T|A Chain A, Bub3 Complex With Mad3 (Bubr1) Glebs Motif Length = 341

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 53/110 (48%), Gaps = 23/110 (20%)
Query: 3   SIEGRVGVHHLDDS----QQSKNFTFKCHR----DGSEIYSVNSLNFHPIHHTFATAGSD 54
           SI+GRV V   DD       SK F F+CHR    D +  Y VNS+ F P H    TAGSD
Sbjct: 213 SIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSD 272
Query: 55  GAFNFWDKDSKQRLKAMSR----------CGQPIPC-----STFNTDGSI 89
           G  + W+  +++++K  ++          C   I C      TF T+ +I
Sbjct: 273 GIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAAI 322

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	136
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.83
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.62
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.62
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.61
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.61
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.6
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.6
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.6
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.59
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.59
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.59
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.59
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.59
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.58
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.58
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.57
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.56
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.54
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.53
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.53
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.52
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.52
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.51
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.51
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.51
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.51
2pm7_B	297	Protein transport protein SEC13, protein transport	99.51
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.5
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.5
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.5
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.49
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.49
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.49
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.49
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.47
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.47
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.46
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.46
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.46
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.45
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.44
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.44
2pm7_B	297	Protein transport protein SEC13, protein transport	99.44
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.43
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.43
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.43
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.42
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.42
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.42
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.42
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.42
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.42
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.42
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.41
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.41
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.41
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.41
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.41
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.4
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.4
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.4
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.4
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.4
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.39
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.38
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.38
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.38
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.37
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.37
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.37
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.37
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.37
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.37
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.36
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.36
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.35
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.35
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.34
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.34
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.34
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.33
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.33
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.33
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.33
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.32
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.32
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.32
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.32
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.32
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.31
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.31
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.31
3jro_A	753	Fusion protein of protein transport protein SEC13	99.31
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.3
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.3
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.3
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.3
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.29
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.28
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.28
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.27
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.27
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.26
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.26
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.25
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.24
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.24
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.24
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.24
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.24
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.23
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.22
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.2
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.2
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.2
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.17
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.17
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.14
3jro_A	753	Fusion protein of protein transport protein SEC13	99.12
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.11
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.09
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.06
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.05
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.05
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	98.99
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	98.93
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.91
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	98.89
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	98.84
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	98.79
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	98.74
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	98.7
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.7
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	98.63
1k32_A	1045	Tricorn protease; protein degradation, substrate g	98.56
1k32_A	1045	Tricorn protease; protein degradation, substrate g	98.55
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	98.55
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	98.55
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	98.53
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.49
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	98.44
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	98.44
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	98.43
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	98.43
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	98.42
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	98.4
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	98.35
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	98.33
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	98.3
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	98.25
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	98.25
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	98.24
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	98.23
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	98.18
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.18
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.16
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	98.16
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.14
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.12
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	98.1
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.06
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.05
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	98.04
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.0
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	98.0
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	97.99
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	97.98
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	97.95
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	97.93
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	97.92
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	97.88
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	97.85
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	97.84
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	97.84
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	97.75
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	97.74
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	97.72
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	97.65
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	97.63
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	97.63
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	97.62
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	97.61
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	97.6
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	97.58
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	97.58
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	97.54
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	97.49
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	97.47
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	97.43
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	97.41
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	97.4
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	97.39
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	97.37
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	97.35
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	97.32
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	97.26
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	97.23
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	97.15
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	97.02
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	97.0
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	96.89
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	96.75
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	96.71
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	96.65
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	96.63
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	96.56
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	96.51
2qe8_A	343	Uncharacterized protein; structural genomics, join	96.34
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	96.26
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	96.25
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	96.2
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	96.2
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	96.2
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	96.11
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	96.11
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	96.11
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	95.99
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	95.97
2qe8_A	343	Uncharacterized protein; structural genomics, join	95.8
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	95.75
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	95.65
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	95.54
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	95.54
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	95.53
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	95.44
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	95.43
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	95.3
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	95.3
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	95.07
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	95.06
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	94.88
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	94.77
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	94.76
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	94.7
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	94.6
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	94.59
2ece_A	462	462AA long hypothetical selenium-binding protein;	94.17
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	93.82
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	93.6
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	92.82
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	92.14
2p4o_A	306	Hypothetical protein; putative lactonase, structur	91.64
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	91.58
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	91.47
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	91.38
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	91.36
2ece_A	462	462AA long hypothetical selenium-binding protein;	91.06
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	90.49
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	90.16
2p4o_A	306	Hypothetical protein; putative lactonase, structur	90.08
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	89.93
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	89.71
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	89.67
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	89.44
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	88.45
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	86.6
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	86.21
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	86.13
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	85.26
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	84.35
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	82.36
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	82.07
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	81.61
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	80.99

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.83  E-value=4.3e-20  Score=136.76  Aligned_cols=127  Identities=51%  Similarity=0.964  Sum_probs=106.0

Q ss_pred             CceeceEEEEEeeCCCC-cceeEEEeeeC-------CCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeeccc
Q 041215            2 GSIEGRVGVHHLDDSQQ-SKNFTFKCHRD-------GSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSR   73 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~-~~~~~l~~h~~-------~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~   73 (136)
                      |+.||.+.+|.++.... .....+.+|..       ..+.+.|.+++|+|++.+|++++.|+.|++||+.++..+..+..
T Consensus       234 ~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  313 (368)
T 3mmy_A          234 GSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQ  313 (368)
T ss_dssp             EETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC
T ss_pred             ecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecC
Confidence            67789998855544332 56777777764       11122599999999999999999999999999999999999999


Q ss_pred             CCCceeEEEEccCCCEEEEEEcccccccccccCCCCCcceEEEEcCCcccccccCCC
Q 041215           74 CGQPIPCSTFNTDGSIFAYSVCYDWSKGAENHNPATAKTYIYLHLPQETEVKGKPRA  130 (136)
Q Consensus        74 h~~~v~~v~~sp~~~~l~s~~~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (136)
                      |..+|.+++|+|++.+|++++.|+|.+......++ ++..+.++++.+ +++||+||
T Consensus       314 ~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~~~-~~~~i~~~~~~~-~~~p~~~~  368 (368)
T 3mmy_A          314 LDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQ-KKNYIFLRNAAE-ELKPRNKK  368 (368)
T ss_dssp             CSSCEEEEEECTTSSCEEEEECCCSTTCGGGCCTT-SCCEEEEECCTT-TTSBC---
T ss_pred             CCCCceEEEECCCCCeEEEEecccccccccccCCC-ccceeeehhcCc-ccCcccCC
Confidence            99999999999999999999999999999888777 788999999987 99999987

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.62  E-value=2.9e-15  Score=111.70  Aligned_cols=95  Identities=22%  Similarity=0.280  Sum_probs=86.1

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS   81 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v   81 (136)
                      |+.||.|.+  ||.++++....+.+|..     +|.+++|+|++.+|++++.|+.|++||+.++..+..+.+|...|.++
T Consensus       182 g~~dg~i~i--wd~~~~~~~~~~~~h~~-----~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~  254 (321)
T 3ow8_A          182 GAIDGIINI--FDIATGKLLHTLEGHAM-----PIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNV  254 (321)
T ss_dssp             EETTSCEEE--EETTTTEEEEEECCCSS-----CCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred             EcCCCeEEE--EECCCCcEEEEEcccCC-----ceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEE
Confidence            677899887  88888999999999999     99999999999999999999999999999999999999999999999


Q ss_pred             EEccCCCEEEEEEccccccccc
Q 041215           82 TFNTDGSIFAYSVCYDWSKGAE  103 (136)
Q Consensus        82 ~~sp~~~~l~s~~~dd~~~~~~  103 (136)
                      +|+|++.+|++++.|...+..+
T Consensus       255 ~~sp~~~~l~s~s~D~~v~iwd  276 (321)
T 3ow8_A          255 AFCPDDTHFVSSSSDKSVKVWD  276 (321)
T ss_dssp             EECTTSSEEEEEETTSCEEEEE
T ss_pred             EECCCCCEEEEEeCCCcEEEEe
Confidence            9999999999998887554433

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.62  E-value=4.1e-15  Score=110.92  Aligned_cols=92  Identities=17%  Similarity=0.212  Sum_probs=84.7

Q ss_pred             CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC   80 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~   80 (136)
                      +|+.||+|.+  ||.+.+.....+.+|..     .|.+++|+|++.+|++++.|+.|++||+.++.++.++.+|.+.|.+
T Consensus       223 s~s~dg~i~i--wd~~~~~~~~~~~~h~~-----~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~  295 (321)
T 3ow8_A          223 TASDDGYIKI--YDVQHANLAGTLSGHAS-----WVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWG  295 (321)
T ss_dssp             EECTTSCEEE--EETTTCCEEEEECCCSS-----CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred             EEcCCCeEEE--EECCCcceeEEEcCCCC-----ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEE
Confidence            3678999988  77788888899999999     9999999999999999999999999999999999999999999999


Q ss_pred             EEEccCCCEEEEEEccccc
Q 041215           81 STFNTDGSIFAYSVCYDWS   99 (136)
Q Consensus        81 v~~sp~~~~l~s~~~dd~~   99 (136)
                      ++|+|++.+|++++.|...
T Consensus       296 v~~s~~g~~l~s~~~d~~i  314 (321)
T 3ow8_A          296 VKYNGNGSKIVSVGDDQEI  314 (321)
T ss_dssp             EEECTTSSEEEEEETTCCE
T ss_pred             EEECCCCCEEEEEeCCCeE
Confidence            9999999999998887654

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.61  E-value=7e-15  Score=111.09  Aligned_cols=95  Identities=14%  Similarity=0.135  Sum_probs=79.5

Q ss_pred             CCceeceEEEEEeeCCCCccee----EEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCC
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNF----TFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQ   76 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~----~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~   76 (136)
                      +|+.||+|++  ||..+++...    .+.+|..     .|.+++|+|++.+|++++.|+.|++||+.++.++..+.+|.+
T Consensus        98 ~~s~dg~v~l--Wd~~~~~~~~~~~~~~~~H~~-----~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~  170 (344)
T 4gqb_B           98 VASDSGAVEL--WELDENETLIVSKFCKYEHDD-----IVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAA  170 (344)
T ss_dssp             EEETTSEEEE--EEECTTSSCEEEEEEEECCSS-----CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred             EEECCCEEEE--EeccCCCceeEeeccccCCCC-----CEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCC
Confidence            3678999998  5555555443    3457888     999999999999999999999999999999999999999999


Q ss_pred             ceeEEEEccCCC-EEEEEEcccccccc
Q 041215           77 PIPCSTFNTDGS-IFAYSVCYDWSKGA  102 (136)
Q Consensus        77 ~v~~v~~sp~~~-~l~s~~~dd~~~~~  102 (136)
                      .|.+++|++++. ++++++.|...+..
T Consensus       171 ~V~~~~~~~~~~~~l~s~s~D~~v~iw  197 (344)
T 4gqb_B          171 QVTCVAASPHKDSVFLSCSEDNRILLW  197 (344)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred             ceEEEEecCCCCCceeeeccccccccc
Confidence            999999999985 77888777654433

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.61  E-value=5.6e-15  Score=108.93  Aligned_cols=93  Identities=10%  Similarity=0.025  Sum_probs=85.2

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS   81 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v   81 (136)
                      |+.||+|++  ||..++.....+..|..     +|.+++|+|++++|++++.|+.|++||+.++..+..+.+|.+.|.++
T Consensus        31 ~~~dg~v~l--Wd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~  103 (304)
T 2ynn_A           31 TLYSGRVEL--WNYETQVEVRSIQVTET-----PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSI  103 (304)
T ss_dssp             EETTSEEEE--EETTTTEEEEEEECCSS-----CEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred             EcCCCcEEE--EECCCCceeEEeeccCC-----cEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEE
Confidence            678999988  77788888999999999     99999999999999999999999999999999999999999999999


Q ss_pred             EEccCCCEEEEEEccccccc
Q 041215           82 TFNTDGSIFAYSVCYDWSKG  101 (136)
Q Consensus        82 ~~sp~~~~l~s~~~dd~~~~  101 (136)
                      +|+|++.++++|+.|...+.
T Consensus       104 ~~~~~~~~l~sgs~D~~v~l  123 (304)
T 2ynn_A          104 AVHPTKPYVLSGSDDLTVKL  123 (304)
T ss_dssp             EECSSSSEEEEEETTSCEEE
T ss_pred             EEcCCCCEEEEECCCCeEEE
Confidence            99999999999988775443

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.60  E-value=1.1e-14  Score=109.86  Aligned_cols=96  Identities=14%  Similarity=0.119  Sum_probs=81.5

Q ss_pred             CceeceEEEEEeeCCCCc---------------c-eeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCc-EEEEeCCC
Q 041215            2 GSIEGRVGVHHLDDSQQS---------------K-NFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGA-FNFWDKDS   64 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~---------------~-~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~-v~vwd~~~   64 (136)
                      |+.||.|.+  ||..++.               + ...+.+|..     .|.+++|+|++.+|++++.|+. |++||+.+
T Consensus       155 g~~~g~v~i--wd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~-----~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~  227 (355)
T 3vu4_A          155 EFNLGQIHI--TKLQSSGSATTQDQGVQQKAILGKGVLIKAHTN-----PIKMVRLNRKSDMVATCSQDGTIIRVFKTED  227 (355)
T ss_dssp             SSCTTCEEE--EECCC------------------CCEEECCCSS-----CEEEEEECTTSSEEEEEETTCSEEEEEETTT
T ss_pred             CCcCcEEEE--EECCCCCccccccccccccccCcccEEEEccCC-----ceEEEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence            678999988  5655443               2 678889999     9999999999999999999998 99999999


Q ss_pred             cceeeecc-c-CCCceeEEEEccCCCEEEEEEcccccccccc
Q 041215           65 KQRLKAMS-R-CGQPIPCSTFNTDGSIFAYSVCYDWSKGAEN  104 (136)
Q Consensus        65 ~~~~~~~~-~-h~~~v~~v~~sp~~~~l~s~~~dd~~~~~~~  104 (136)
                      +..+.++. + |...|.+++|+|++.+|++++.|........
T Consensus       228 ~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~  269 (355)
T 3vu4_A          228 GVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEI  269 (355)
T ss_dssp             CCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEES
T ss_pred             CcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEc
Confidence            99999997 5 9999999999999999999988865544433

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.60  E-value=6.7e-15  Score=110.09  Aligned_cols=95  Identities=19%  Similarity=0.234  Sum_probs=86.2

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS   81 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v   81 (136)
                      |+.||+|.+  ||..++.....+.+|..     .|.+++|+|++.+|++++.|+.|++||+.++..+..+.+|...|+++
T Consensus       160 ~s~d~~i~~--wd~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v  232 (340)
T 1got_B          160 SSGDTTCAL--WDIETGQQTTTFTGHTG-----DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAI  232 (340)
T ss_dssp             EETTSCEEE--EETTTTEEEEEECCCSS-----CEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEE
T ss_pred             EECCCcEEE--EECCCCcEEEEEcCCCC-----ceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEE
Confidence            567899887  78888899999999999     99999999999999999999999999999999999999999999999


Q ss_pred             EEccCCCEEEEEEccccccccc
Q 041215           82 TFNTDGSIFAYSVCYDWSKGAE  103 (136)
Q Consensus        82 ~~sp~~~~l~s~~~dd~~~~~~  103 (136)
                      +|+|++.+|++|+.|...+..+
T Consensus       233 ~~~p~~~~l~s~s~d~~v~iwd  254 (340)
T 1got_B          233 CFFPNGNAFATGSDDATCRLFD  254 (340)
T ss_dssp             EECTTSSEEEEEETTSCEEEEE
T ss_pred             EEcCCCCEEEEEcCCCcEEEEE
Confidence            9999999999998887554443

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.60  E-value=1.2e-14  Score=107.19  Aligned_cols=96  Identities=23%  Similarity=0.323  Sum_probs=83.6

Q ss_pred             CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCc-ceeeecccCCCcee
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSK-QRLKAMSRCGQPIP   79 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~-~~~~~~~~h~~~v~   79 (136)
                      +|+.||+|++  ||..+++....+.+|..     .|.+++|+|++.+|++++.|+.|++||+.++ .....+.+|...|.
T Consensus        72 s~s~d~~i~v--wd~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~  144 (304)
T 2ynn_A           72 VGSDDFRIRV--FNYNTGEKVVDFEAHPD-----YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVM  144 (304)
T ss_dssp             EEETTSEEEE--EETTTCCEEEEEECCSS-----CEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEE
T ss_pred             EECCCCEEEE--EECCCCcEEEEEeCCCC-----cEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEE
Confidence            3678999988  77788899999999999     9999999999999999999999999999876 44567889999999


Q ss_pred             EEEEcc-CCCEEEEEEccccccccc
Q 041215           80 CSTFNT-DGSIFAYSVCYDWSKGAE  103 (136)
Q Consensus        80 ~v~~sp-~~~~l~s~~~dd~~~~~~  103 (136)
                      +++|+| ++.++++|+.|...+..+
T Consensus       145 ~v~~~p~~~~~l~sgs~D~~v~iwd  169 (304)
T 2ynn_A          145 CVAFNPKDPSTFASGCLDRTVKVWS  169 (304)
T ss_dssp             EEEECTTCTTEEEEEETTSEEEEEE
T ss_pred             EEEECCCCCCEEEEEeCCCeEEEEE
Confidence            999999 678999998887554443

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.59  E-value=5.2e-15  Score=113.61  Aligned_cols=91  Identities=16%  Similarity=0.216  Sum_probs=84.4

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS   81 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v   81 (136)
                      |+.||+|.+  ||.+++....++.+|..     .|.+++|+|++.+|++++.|+.|++||+.++.++..+.+|...|.++
T Consensus       314 gs~D~~i~i--wd~~~~~~~~~~~~h~~-----~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l  386 (410)
T 1vyh_C          314 GSRDKTIKM--WDVSTGMCLMTLVGHDN-----WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSL  386 (410)
T ss_dssp             EETTSEEEE--EETTTTEEEEEEECCSS-----CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEE
T ss_pred             EeCCCeEEE--EECCCCceEEEEECCCC-----cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEE
Confidence            677899888  88888999999999999     99999999999999999999999999999999999999999999999


Q ss_pred             EEccCCCEEEEEEccccc
Q 041215           82 TFNTDGSIFAYSVCYDWS   99 (136)
Q Consensus        82 ~~sp~~~~l~s~~~dd~~   99 (136)
                      +|+|++.+|++|+.|...
T Consensus       387 ~~~~~~~~l~sgs~D~~i  404 (410)
T 1vyh_C          387 DFHKTAPYVVTGSVDQTV  404 (410)
T ss_dssp             EECSSSSCEEEEETTSEE
T ss_pred             EEcCCCCEEEEEeCCCcE
Confidence            999999999999887654

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.59  E-value=7.4e-15  Score=110.98  Aligned_cols=93  Identities=14%  Similarity=0.146  Sum_probs=81.4

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC   80 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~   80 (136)
                      |+.||.|.+  ||.++++...++..|..     .|.+++|+|++ .+|++++.|+.|++||+.+++++..+ +|.+.|++
T Consensus       245 g~~d~~i~~--wd~~~~~~~~~~~~~~~-----~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~  316 (357)
T 4g56_B          245 GDETGNVSL--VNIKNPDSAQTSAVHSQ-----NITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTG  316 (357)
T ss_dssp             EESSSCEEE--EESSCGGGCEEECCCSS-----CEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEE
T ss_pred             eecccceeE--EECCCCcEeEEEeccce-----eEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEE
Confidence            577888887  78888999999999999     99999999998 68999999999999999998877655 89999999


Q ss_pred             EEEcc-CCCEEEEEEcccccccc
Q 041215           81 STFNT-DGSIFAYSVCYDWSKGA  102 (136)
Q Consensus        81 v~~sp-~~~~l~s~~~dd~~~~~  102 (136)
                      |+|+| ++.+|++++.|......
T Consensus       317 vafsP~d~~~l~s~s~Dg~v~iW  339 (357)
T 4g56_B          317 VAWSPLDHSKFTTVGWDHKVLHH  339 (357)
T ss_dssp             EEECSSSTTEEEEEETTSCEEEE
T ss_pred             EEEeCCCCCEEEEEcCCCeEEEE
Confidence            99998 78999999887755433

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.59  E-value=6e-15  Score=111.46  Aligned_cols=90  Identities=16%  Similarity=0.153  Sum_probs=76.1

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC   80 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~   80 (136)
                      |+.||+|++  ||.++++.+.++.+|..     .|.+++|+|++ .+|++++.|+.|++||+.++++ ..+.+|.+.|++
T Consensus       233 g~~dg~v~~--wd~~~~~~~~~~~~h~~-----~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~-~~~~~H~~~V~~  304 (344)
T 4gqb_B          233 GDENGTVSL--VDTKSTSCVLSSAVHSQ-----CVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSEL-FRSQAHRDFVRD  304 (344)
T ss_dssp             EETTSEEEE--EESCC--CCEEEECCSS-----CEEEEEECSSSSCCEEEEETTSCEEEECTTCCEE-EEECCCSSCEEE
T ss_pred             eccCCcEEE--EECCCCcEEEEEcCCCC-----CEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcE-EEEcCCCCCEEE
Confidence            677899988  78899999999999999     99999999998 6899999999999999998875 456799999999


Q ss_pred             EEEccCCC-EEEEEEccccc
Q 041215           81 STFNTDGS-IFAYSVCYDWS   99 (136)
Q Consensus        81 v~~sp~~~-~l~s~~~dd~~   99 (136)
                      |+|+|++. +|++++.|...
T Consensus       305 v~~sp~~~~llas~s~D~~v  324 (344)
T 4gqb_B          305 ATWSPLNHSLLTTVGWDHQV  324 (344)
T ss_dssp             EEECSSSTTEEEEEETTSCE
T ss_pred             EEEeCCCCeEEEEEcCCCeE
Confidence            99999986 56666655544

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.59  E-value=1.1e-14  Score=110.43  Aligned_cols=89  Identities=9%  Similarity=0.003  Sum_probs=74.0

Q ss_pred             EEEEeeCCCCc----ceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeec-ccCCCceeEEEE
Q 041215            9 GVHHLDDSQQS----KNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAM-SRCGQPIPCSTF   83 (136)
Q Consensus         9 ~i~~~d~~~~~----~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~-~~h~~~v~~v~~   83 (136)
                      .++.|+.....    ....+..|..     .|.+++|+|+|.+|++|+.|+.|++||+.+++++..+ .+|..+|++|+|
T Consensus       246 ~i~~~~~~~~~~~~~~~~~~~~~~~-----~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~f  320 (365)
T 4h5i_A          246 VLTKISIKSGNTSVLRSKQVTNRFK-----GITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTI  320 (365)
T ss_dssp             EEEEEEEETTEEEEEEEEEEESSCS-----CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEE
T ss_pred             EEeecccccceecceeeeeecCCCC-----CeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEE
Confidence            44556654332    2345667778     9999999999999999999999999999999988874 789999999999


Q ss_pred             ccCCCEEEEEEcccccccc
Q 041215           84 NTDGSIFAYSVCYDWSKGA  102 (136)
Q Consensus        84 sp~~~~l~s~~~dd~~~~~  102 (136)
                      +|++++|++|+.|...+..
T Consensus       321 Spdg~~laS~S~D~tvrvw  339 (365)
T 4h5i_A          321 SPDSTYVASVSAANTIHII  339 (365)
T ss_dssp             CTTSCEEEEEETTSEEEEE
T ss_pred             CCCCCEEEEEeCCCeEEEE
Confidence            9999999999988866443

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.59  E-value=7.5e-15  Score=112.71  Aligned_cols=94  Identities=18%  Similarity=0.227  Sum_probs=85.9

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS   81 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v   81 (136)
                      ||.||+|.+  ||..++....++.+|..     .|.+++|+|++.+|++++.|+.|++||+.++.++..+.+|...|.++
T Consensus       126 ~s~Dg~i~v--wd~~~~~~~~~l~~h~~-----~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v  198 (410)
T 1vyh_C          126 ASEDATIKV--WDYETGDFERTLKGHTD-----SVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSV  198 (410)
T ss_dssp             EESSSCEEE--EETTTCCCCEEECCCSS-----CEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEE
T ss_pred             EeCCCeEEE--EECCCCcEEEEEeccCC-----cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEE
Confidence            678999988  77788888999999999     99999999999999999999999999999999999999999999999


Q ss_pred             EEccCCCEEEEEEcccccccc
Q 041215           82 TFNTDGSIFAYSVCYDWSKGA  102 (136)
Q Consensus        82 ~~sp~~~~l~s~~~dd~~~~~  102 (136)
                      +|+|++.++++|+.|...+..
T Consensus       199 ~~~p~~~~l~s~s~D~~i~~w  219 (410)
T 1vyh_C          199 SIMPNGDHIVSASRDKTIKMW  219 (410)
T ss_dssp             EECSSSSEEEEEETTSEEEEE
T ss_pred             EEeCCCCEEEEEeCCCeEEEE
Confidence            999999999999887754433

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.58  E-value=1.5e-14  Score=108.12  Aligned_cols=94  Identities=15%  Similarity=0.139  Sum_probs=81.6

Q ss_pred             CceeceEEEEEeeCC-----CCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCC
Q 041215            2 GSIEGRVGVHHLDDS-----QQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQ   76 (136)
Q Consensus         2 gs~dG~v~i~~~d~~-----~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~   76 (136)
                      ||.||+|++|.+...     .+.+...+.+|..     .|.+++|+|++.+|++++.|+.|++||+.++..+..+.+|..
T Consensus        45 gs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~-----~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~  119 (343)
T 2xzm_R           45 GSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNH-----FVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQS  119 (343)
T ss_dssp             EETTSCEEEEEECSSCCSSBSEEEEEEECCCSS-----CEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCS
T ss_pred             EcCCCEEEEEECCcCCcccccccccchhccCCC-----ceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCC
Confidence            678999999665432     2345667888999     999999999999999999999999999999999999999999


Q ss_pred             ceeEEEEccCCCEEEEEEcccccc
Q 041215           77 PIPCSTFNTDGSIFAYSVCYDWSK  100 (136)
Q Consensus        77 ~v~~v~~sp~~~~l~s~~~dd~~~  100 (136)
                      .|.+++|+|++.++++++.|...+
T Consensus       120 ~v~~v~~sp~~~~l~s~~~d~~i~  143 (343)
T 2xzm_R          120 EVYSVAFSPDNRQILSAGAEREIK  143 (343)
T ss_dssp             CEEEEEECSSTTEEEEEETTSCEE
T ss_pred             cEEEEEECCCCCEEEEEcCCCEEE
Confidence            999999999999999998876443

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.58  E-value=3e-14  Score=104.87  Aligned_cols=117  Identities=30%  Similarity=0.534  Sum_probs=97.2

Q ss_pred             CCceeceEEEEEeeCC--C--CcceeEEEeeeC----CCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecc
Q 041215            1 VGSIEGRVGVHHLDDS--Q--QSKNFTFKCHRD----GSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMS   72 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~--~--~~~~~~l~~h~~----~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~   72 (136)
                      +|+.||.+.+|.++..  .  ......+.+|..    ..+...|.+++|+|++.+|++++.||.|++||+.++..+..+.
T Consensus       211 ~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~  290 (342)
T 1yfq_A          211 CSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA  290 (342)
T ss_dssp             EEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC
T ss_pred             EEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhh
Confidence            3677999999777554  1  367778887742    1223389999999999999999999999999999999999999


Q ss_pred             cC-CCceeEEEEccCCCEEEEEEcccc-cccccc--cCCCCCcceEEEEc-CC
Q 041215           73 RC-GQPIPCSTFNTDGSIFAYSVCYDW-SKGAEN--HNPATAKTYIYLHL-PQ  120 (136)
Q Consensus        73 ~h-~~~v~~v~~sp~~~~l~s~~~dd~-~~~~~~--~~~~~~~~~~~~~~-~~  120 (136)
                      .| ..+|.+++  |++.+|++++.|++ .++...  ..|+ ++..+.+++ +.
T Consensus       291 ~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~~~~~~~~-~~~~i~~~~~~~  340 (342)
T 1yfq_A          291 KFNEDSVVKIA--CSDNILCLATSDDTFKTNAAIDQTIEL-NASSIYIIFDYE  340 (342)
T ss_dssp             CCSSSEEEEEE--ECSSEEEEEEECTHHHHCSSSCTTSCC-CCCEEEEEETCS
T ss_pred             cccCCCceEec--CCCCeEEEEecCCcccccccccccCCC-CCceEEEecccc
Confidence            98 99999999  99999999999999 888886  5566 778888888 64

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.57  E-value=1.9e-14  Score=106.88  Aligned_cols=95  Identities=13%  Similarity=0.082  Sum_probs=83.6

Q ss_pred             CceeceEEEEEeeCC---CCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCce
Q 041215            2 GSIEGRVGVHHLDDS---QQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPI   78 (136)
Q Consensus         2 gs~dG~v~i~~~d~~---~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v   78 (136)
                      ||.||+|.+|.++..   .+.+...+.+|..     .|.+++|+|++.+|++++.|+.|++||+.++..+..+.+|...|
T Consensus        36 ~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v  110 (319)
T 3frx_A           36 ASRDKTLISWKLTGDDQKFGVPVRSFKGHSH-----IVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDV  110 (319)
T ss_dssp             EETTSEEEEEEEEEETTEEEEEEEEEECCSS-----CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCE
T ss_pred             ecCCccEEEecCCCCCccccccceEEeCCcc-----cEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcE
Confidence            688999999766432   2345678899999     99999999999999999999999999999999999999999999


Q ss_pred             eEEEEccCCCEEEEEEccccccc
Q 041215           79 PCSTFNTDGSIFAYSVCYDWSKG  101 (136)
Q Consensus        79 ~~v~~sp~~~~l~s~~~dd~~~~  101 (136)
                      .+++|+|++.++++|+.|...+.
T Consensus       111 ~~~~~~~~~~~l~s~s~D~~i~v  133 (319)
T 3frx_A          111 MSVDIDKKASMIISGSRDKTIKV  133 (319)
T ss_dssp             EEEEECTTSCEEEEEETTSCEEE
T ss_pred             EEEEEcCCCCEEEEEeCCCeEEE
Confidence            99999999999999988875443

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.56  E-value=4.3e-14  Score=106.54  Aligned_cols=95  Identities=21%  Similarity=0.271  Sum_probs=85.3

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCC--CCEEEEEcCCCcEEEEeCCCcceeeecccCCCcee
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPI--HHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIP   79 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~   79 (136)
                      ||.||+|.+  ||..+++....+.+|..     .|.+++|+|+  +.+|++++.|+.|++||+.++.++..+..|...|+
T Consensus       172 ~s~D~~v~l--wd~~~~~~~~~~~~h~~-----~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~  244 (354)
T 2pbi_B          172 ASGDGTCAL--WDVESGQLLQSFHGHGA-----DVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVN  244 (354)
T ss_dssp             EETTSEEEE--EETTTCCEEEEEECCSS-----CEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE
T ss_pred             EeCCCcEEE--EeCCCCeEEEEEcCCCC-----CeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeE
Confidence            677899988  78888999999999999     9999999874  68999999999999999999999999999999999


Q ss_pred             EEEEccCCCEEEEEEccccccccc
Q 041215           80 CSTFNTDGSIFAYSVCYDWSKGAE  103 (136)
Q Consensus        80 ~v~~sp~~~~l~s~~~dd~~~~~~  103 (136)
                      +++|+|++.++++|+.|...+..+
T Consensus       245 ~v~~~p~~~~l~s~s~D~~v~lwd  268 (354)
T 2pbi_B          245 SVRYYPSGDAFASGSDDATCRLYD  268 (354)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEE
T ss_pred             EEEEeCCCCEEEEEeCCCeEEEEE
Confidence            999999999999999887654443

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.54  E-value=9.7e-14  Score=101.85  Aligned_cols=93  Identities=24%  Similarity=0.333  Sum_probs=84.7

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS   81 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v   81 (136)
                      |+.||.|.+  ||..+++....+.+|..     .|.+++|+|++.+|++++.|+.|++||+.++..+..+..|..+|.++
T Consensus        83 ~~~d~~i~v--wd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~  155 (312)
T 4ery_A           83 ASDDKTLKI--WDVSSGKCLKTLKGHSN-----YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV  155 (312)
T ss_dssp             EETTSEEEE--EETTTCCEEEEEECCSS-----CEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred             ECCCCEEEE--EECCCCcEEEEEcCCCC-----CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEE
Confidence            577899988  77788888999999999     99999999999999999999999999999999999999999999999


Q ss_pred             EEccCCCEEEEEEccccccc
Q 041215           82 TFNTDGSIFAYSVCYDWSKG  101 (136)
Q Consensus        82 ~~sp~~~~l~s~~~dd~~~~  101 (136)
                      +|+|++.++++++.|.....
T Consensus       156 ~~~~~~~~l~~~~~d~~i~~  175 (312)
T 4ery_A          156 HFNRDGSLIVSSSYDGLCRI  175 (312)
T ss_dssp             EECTTSSEEEEEETTSCEEE
T ss_pred             EEcCCCCEEEEEeCCCcEEE
Confidence            99999999999988775443

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.53  E-value=9.6e-14  Score=101.87  Aligned_cols=94  Identities=14%  Similarity=0.232  Sum_probs=84.7

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS   81 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v   81 (136)
                      |+.||.+.+  |+..+++....+.+|..     .|.+++|+|++.+|++++.|+.|++||+.++..+..+.+|...|.++
T Consensus        41 ~~~dg~i~i--w~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~  113 (312)
T 4ery_A           41 SSADKLIKI--WGAYDGKFEKTISGHKL-----GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC  113 (312)
T ss_dssp             EETTSCEEE--EETTTCCEEEEECCCSS-----CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred             eeCCCeEEE--EeCCCcccchhhccCCC-----ceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEE
Confidence            677899988  67777888888889999     99999999999999999999999999999999999999999999999


Q ss_pred             EEccCCCEEEEEEcccccccc
Q 041215           82 TFNTDGSIFAYSVCYDWSKGA  102 (136)
Q Consensus        82 ~~sp~~~~l~s~~~dd~~~~~  102 (136)
                      +|+|++.++++++.|......
T Consensus       114 ~~~~~~~~l~s~~~d~~i~iw  134 (312)
T 4ery_A          114 NFNPQSNLIVSGSFDESVRIW  134 (312)
T ss_dssp             EECSSSSEEEEEETTSCEEEE
T ss_pred             EEcCCCCEEEEEeCCCcEEEE
Confidence            999999999999887754433

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.53  E-value=5.8e-14  Score=112.74  Aligned_cols=94  Identities=20%  Similarity=0.260  Sum_probs=83.8

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecc-------cC
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMS-------RC   74 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~-------~h   74 (136)
                      ||.|++|.+  ||..+++...++.+|..     .|.+++|+|++.+|++++.|+.|++||+.++..+..+.       +|
T Consensus       166 ~s~D~~v~l--wd~~~~~~~~~l~~H~~-----~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h  238 (611)
T 1nr0_A          166 GSDDNTVAI--FEGPPFKFKSTFGEHTK-----FVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAH  238 (611)
T ss_dssp             EETTSCEEE--EETTTBEEEEEECCCSS-----CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSS
T ss_pred             EeCCCeEEE--EECCCCeEeeeeccccC-----ceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeecccccccccc
Confidence            678999988  67777888889999999     99999999999999999999999999999988887774       79


Q ss_pred             CCceeEEEEccCCCEEEEEEcccccccc
Q 041215           75 GQPIPCSTFNTDGSIFAYSVCYDWSKGA  102 (136)
Q Consensus        75 ~~~v~~v~~sp~~~~l~s~~~dd~~~~~  102 (136)
                      .+.|.+++|+|++.+|++++.|...+..
T Consensus       239 ~~~V~~v~~spdg~~l~s~s~D~~v~lW  266 (611)
T 1nr0_A          239 SGSVFGLTWSPDGTKIASASADKTIKIW  266 (611)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             CCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence            9999999999999999999888755433

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.52  E-value=9.2e-14  Score=109.31  Aligned_cols=88  Identities=22%  Similarity=0.299  Sum_probs=79.0

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS   81 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v   81 (136)
                      |+.||+|++  ||. +++...+|.+|..     .|.+++|+|++++|++++.|+.|++||. ++..+..+.+|...|.++
T Consensus        34 ~~~d~~v~i--Wd~-~~~~~~~l~gh~~-----~V~~l~fspdg~~las~~~d~~i~vWd~-~~~~~~~~~~~~~~v~~~  104 (577)
T 2ymu_A           34 ASDDKTVKL--WNR-NGQLLQTLTGHSS-----SVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGV  104 (577)
T ss_dssp             EETTSEEEE--ECT-TSCEEEEEECCSS-----CEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEE
T ss_pred             EeCCCEEEE--EEC-CCCEEEEEeCCCC-----CEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEEECCCCCEEEE
Confidence            677899988  664 6778899999999     9999999999999999999999999995 567888999999999999


Q ss_pred             EEccCCCEEEEEEcccc
Q 041215           82 TFNTDGSIFAYSVCYDW   98 (136)
Q Consensus        82 ~~sp~~~~l~s~~~dd~   98 (136)
                      +|+|++.++++++.|..
T Consensus       105 ~~s~d~~~l~~~~~d~~  121 (577)
T 2ymu_A          105 AFSPDGQTIASASDDKT  121 (577)
T ss_dssp             EECTTSSEEEEEETTSC
T ss_pred             EECCCCCEEEEEcCCCc
Confidence            99999999999887654

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.52  E-value=4.6e-14  Score=106.92  Aligned_cols=93  Identities=14%  Similarity=0.205  Sum_probs=83.5

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS   81 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v   81 (136)
                      |+.||.|.+  ||..++.....+..|..     .|.+++|+|++.+|++++.|+.|++||+.++..+..+.+|...|.++
T Consensus       115 ~~~dg~i~i--wd~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~  187 (420)
T 3vl1_A          115 GTTEGDIKV--LDSNFNLQREIDQAHVS-----EITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDI  187 (420)
T ss_dssp             EETTSCEEE--ECTTSCEEEEETTSSSS-----CEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEE
T ss_pred             EECCCCEEE--EeCCCcceeeecccccC-----ccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEE
Confidence            677899988  77787888877788999     99999999999999999999999999999999899999999999999


Q ss_pred             EEccCCCEEEEEEccccccc
Q 041215           82 TFNTDGSIFAYSVCYDWSKG  101 (136)
Q Consensus        82 ~~sp~~~~l~s~~~dd~~~~  101 (136)
                      +|+|++.+|++++.|.....
T Consensus       188 ~~~~~~~~l~s~~~d~~v~i  207 (420)
T 3vl1_A          188 AIIDRGRNVLSASLDGTIRL  207 (420)
T ss_dssp             EEETTTTEEEEEETTSCEEE
T ss_pred             EEcCCCCEEEEEcCCCcEEE
Confidence            99999999999988775443

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.51  E-value=2e-13  Score=102.37  Aligned_cols=96  Identities=11%  Similarity=0.158  Sum_probs=76.5

Q ss_pred             CceeceEEEEEeeCCCCcceeE-EEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCc--ceeeecccCCCce
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFT-FKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSK--QRLKAMSRCGQPI   78 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~-l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~--~~~~~~~~h~~~v   78 (136)
                      |+.||+|++|..+......... ..+|..     .|.+++|+|++.+|++++.|+.+++|+...+  .++..+.+|...|
T Consensus        34 ~~~D~~i~iw~~~~~~~~~~~~~~~~h~~-----~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v  108 (345)
T 3fm0_A           34 CGGDRRIRIWGTEGDSWICKSVLSEGHQR-----TVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEV  108 (345)
T ss_dssp             EETTSCEEEEEEETTEEEEEEEECSSCSS-----CEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCE
T ss_pred             EcCCCeEEEEEcCCCcceeeeeeccccCC-----cEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCc
Confidence            6789999995553322112222 246888     9999999999999999999999999998765  4567888999999


Q ss_pred             eEEEEccCCCEEEEEEcccccccc
Q 041215           79 PCSTFNTDGSIFAYSVCYDWSKGA  102 (136)
Q Consensus        79 ~~v~~sp~~~~l~s~~~dd~~~~~  102 (136)
                      .+++|+|++.+|++|+.|......
T Consensus       109 ~~v~~sp~~~~l~s~s~D~~v~iw  132 (345)
T 3fm0_A          109 KSVAWAPSGNLLATCSRDKSVWVW  132 (345)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEE
T ss_pred             eEEEEeCCCCEEEEEECCCeEEEE
Confidence            999999999999999888754433

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.51  E-value=8e-14  Score=109.66  Aligned_cols=88  Identities=22%  Similarity=0.311  Sum_probs=78.3

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS   81 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v   81 (136)
                      |+.||.|.+  || .+++....+.+|..     .|.+++|+|++++|++++.|+.|++||. +++.+..+.+|.+.|.++
T Consensus       485 ~~~d~~i~i--w~-~~~~~~~~~~~h~~-----~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~  555 (577)
T 2ymu_A          485 ASDDKTVKL--WN-RNGQLLQTLTGHSS-----SVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGV  555 (577)
T ss_dssp             EETTSEEEE--EE-TTSCEEEEEECCSS-----CEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEE
T ss_pred             EeCCCEEEE--Ec-CCCCEEEEEeCCCC-----CEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEE
Confidence            567888888  55 35678888999999     9999999999999999999999999995 678889999999999999


Q ss_pred             EEccCCCEEEEEEcccc
Q 041215           82 TFNTDGSIFAYSVCYDW   98 (136)
Q Consensus        82 ~~sp~~~~l~s~~~dd~   98 (136)
                      +|+|++++|++++.|..
T Consensus       556 ~fs~dg~~l~s~~~D~~  572 (577)
T 2ymu_A          556 AFSPDGQTIASASSDKT  572 (577)
T ss_dssp             EECTTSSCEEEEETTSC
T ss_pred             EEcCCCCEEEEEeCCCE
Confidence            99999999999887653

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.51  E-value=2e-13  Score=100.89  Aligned_cols=92  Identities=13%  Similarity=0.235  Sum_probs=82.7

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeC-CCCEEEEEcCCCcEEEEeCCCcceeeec---ccCCCc
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHP-IHHTFATAGSDGAFNFWDKDSKQRLKAM---SRCGQP   77 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p-~~~~l~s~~~dg~v~vwd~~~~~~~~~~---~~h~~~   77 (136)
                      |+.||.|.+  ||..+++....+.+|..     .|.+++|+| ++.+|++++.|+.|++||+.++..+..+   ..|...
T Consensus        91 ~~~dg~i~v--~d~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  163 (366)
T 3k26_A           91 AGSRGIIRI--INPITMQCIKHYVGHGN-----AINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDE  163 (366)
T ss_dssp             EETTCEEEE--ECTTTCCEEEEEESCCS-----CEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSC
T ss_pred             ecCCCEEEE--EEchhceEeeeecCCCC-----cEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCc
Confidence            677888887  78888889999999999     999999999 8899999999999999999998888777   689999


Q ss_pred             eeEEEEccCCCEEEEEEcccccc
Q 041215           78 IPCSTFNTDGSIFAYSVCYDWSK  100 (136)
Q Consensus        78 v~~v~~sp~~~~l~s~~~dd~~~  100 (136)
                      |.+++|+|++.++++++.|....
T Consensus       164 v~~~~~~~~~~~l~~~~~dg~i~  186 (366)
T 3k26_A          164 VLSADYDLLGEKIMSCGMDHSLK  186 (366)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEE
T ss_pred             eeEEEECCCCCEEEEecCCCCEE
Confidence            99999999999999998876443

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.51  E-value=1.4e-13  Score=102.74  Aligned_cols=89  Identities=13%  Similarity=0.120  Sum_probs=76.0

Q ss_pred             CceeceEEEEEeeCCCCcceeEEE-eeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCccee-eeccc-CCCce
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFK-CHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRL-KAMSR-CGQPI   78 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~-~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~-~~~~~-h~~~v   78 (136)
                      |+.||+|.+  ||.++++....+. .+..     .+.+++|+|++.+|++|+.|+.|++||+.++..+ ..+.. |.++|
T Consensus       145 ~s~dg~i~~--wd~~~~~~~~~~~~~~~~-----~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v  217 (343)
T 3lrv_A          145 ADNRGTIGF--QSYEDDSQYIVHSAKSDV-----EYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKI  217 (343)
T ss_dssp             EETTCCEEE--EESSSSCEEEEECCCSSC-----CCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCE
T ss_pred             EeCCCcEEE--EECCCCcEEEEEecCCCC-----ceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCE
Confidence            678999988  7777777755553 3455     7999999999999999999999999999998877 77887 99999


Q ss_pred             eEEEEccCCCEEEEEEcccc
Q 041215           79 PCSTFNTDGSIFAYSVCYDW   98 (136)
Q Consensus        79 ~~v~~sp~~~~l~s~~~dd~   98 (136)
                      ++++|+|++.+|++++ ++.
T Consensus       218 ~~l~fs~~g~~l~s~~-~~~  236 (343)
T 3lrv_A          218 KEVKFADNGYWMVVEC-DQT  236 (343)
T ss_dssp             EEEEECTTSSEEEEEE-SSB
T ss_pred             EEEEEeCCCCEEEEEe-CCe
Confidence            9999999999999988 553

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.51  E-value=1.3e-13  Score=101.22  Aligned_cols=98  Identities=10%  Similarity=0.180  Sum_probs=80.9

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCC--CCEEEEEcCCCcEEEEeCCCcc--eeeecccCCCc
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPI--HHTFATAGSDGAFNFWDKDSKQ--RLKAMSRCGQP   77 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~--~~~l~s~~~dg~v~vwd~~~~~--~~~~~~~h~~~   77 (136)
                      |+.||+|++|.++....+...++.+|..     +|.+++|++.  +.+|++++.|+.|++||+.++.  .+..+..|...
T Consensus        27 ~s~D~~v~iw~~~~~~~~~~~~l~gH~~-----~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~  101 (297)
T 2pm7_B           27 CSSDKTIKIFEVEGETHKLIDTLTGHEG-----PVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSAS  101 (297)
T ss_dssp             EETTSCEEEEEBCSSCBCCCEEECCCSS-----CEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSC
T ss_pred             EeCCCEEEEEecCCCCcEEEEEEccccC-----CeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCc
Confidence            6789999995554445577889999999     9999999763  7999999999999999998763  45667789999


Q ss_pred             eeEEEEccC--CCEEEEEEcccccccccc
Q 041215           78 IPCSTFNTD--GSIFAYSVCYDWSKGAEN  104 (136)
Q Consensus        78 v~~v~~sp~--~~~l~s~~~dd~~~~~~~  104 (136)
                      |.+++|+|+  +.+|++++.|......+.
T Consensus       102 v~~v~~~p~~~g~~l~s~s~d~~v~~wd~  130 (297)
T 2pm7_B          102 VNSVQWAPHEYGPMLLVASSDGKVSVVEF  130 (297)
T ss_dssp             EEEEEECCGGGCSEEEEEETTSEEEEEEB
T ss_pred             eeEEEeCcCCCCcEEEEEECCCcEEEEEe
Confidence            999999997  889999988875544443

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.50  E-value=1e-13  Score=103.99  Aligned_cols=94  Identities=16%  Similarity=0.261  Sum_probs=79.4

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCc---ceeeecccCCCce
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSK---QRLKAMSRCGQPI   78 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~---~~~~~~~~h~~~v   78 (136)
                      |+.||++.+|..+.........+.+|..     .|.+++|+|++.+|++++.|+.|++||+.++   .++..+..|...|
T Consensus        79 ~s~D~~v~iw~~~~~~~~~~~~~~~h~~-----~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v  153 (345)
T 3fm0_A           79 ASFDATTCIWKKNQDDFECVTTLEGHEN-----EVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDV  153 (345)
T ss_dssp             EETTSCEEEEEECCC-EEEEEEECCCSS-----CEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCE
T ss_pred             EECCCcEEEEEccCCCeEEEEEccCCCC-----CceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCe
Confidence            6789999996554444456778889999     9999999999999999999999999999765   3456778899999


Q ss_pred             eEEEEccCCCEEEEEEcccccc
Q 041215           79 PCSTFNTDGSIFAYSVCYDWSK  100 (136)
Q Consensus        79 ~~v~~sp~~~~l~s~~~dd~~~  100 (136)
                      .+++|+|++.+|++|+.|...+
T Consensus       154 ~~~~~~p~~~~l~s~s~d~~i~  175 (345)
T 3fm0_A          154 KHVVWHPSQELLASASYDDTVK  175 (345)
T ss_dssp             EEEEECSSSSCEEEEETTSCEE
T ss_pred             EEEEECCCCCEEEEEeCCCcEE
Confidence            9999999999999998877544

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.50  E-value=1.5e-13  Score=102.48  Aligned_cols=94  Identities=15%  Similarity=0.243  Sum_probs=73.6

Q ss_pred             CceeceEEEEEeeC-----CCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCC----cceeeecc
Q 041215            2 GSIEGRVGVHHLDD-----SQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDS----KQRLKAMS   72 (136)
Q Consensus         2 gs~dG~v~i~~~d~-----~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~----~~~~~~~~   72 (136)
                      |+.||+|++|..+.     ........+.+|..     .|.+++|+|++.+|++++.|+.|++||+..    ..++..+.
T Consensus        76 ~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~-----~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~  150 (330)
T 2hes_X           76 GSFDSTVSIWAKEESADRTFEMDLLAIIEGHEN-----EVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQ  150 (330)
T ss_dssp             EETTSCEEEEEC-------CCCEEEEEEC---------CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEEC
T ss_pred             EeCCCcEEEEEcccCcCccccceeEEEEcCCCC-----cEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEec
Confidence            67899999955432     12345677888999     999999999999999999999999999943    24567788


Q ss_pred             cCCCceeEEEEccCCCEEEEEEcccccc
Q 041215           73 RCGQPIPCSTFNTDGSIFAYSVCYDWSK  100 (136)
Q Consensus        73 ~h~~~v~~v~~sp~~~~l~s~~~dd~~~  100 (136)
                      +|...|.+++|+|++.+|++|+.|...+
T Consensus       151 ~h~~~v~~v~~~p~~~~l~s~s~D~~i~  178 (330)
T 2hes_X          151 EHSQDVKHVIWHPSEALLASSSYDDTVR  178 (330)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEETTSCEE
T ss_pred             cCCCceEEEEECCCCCEEEEEcCCCeEE
Confidence            9999999999999999999998877443

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.50  E-value=2e-13  Score=102.02  Aligned_cols=95  Identities=20%  Similarity=0.254  Sum_probs=81.3

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeeccc--CCCcee
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSR--CGQPIP   79 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~--h~~~v~   79 (136)
                      |+.||.|.+  ||.+++.....+.+|..     .|.+++|+|++.+|++++.|+.|++||+.++..+..+..  +...|.
T Consensus       202 g~~d~~v~~--wd~~~~~~~~~~~~h~~-----~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~  274 (340)
T 1got_B          202 GACDASAKL--WDVREGMCRQTFTGHES-----DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGIT  274 (340)
T ss_dssp             EETTSCEEE--EETTTCSEEEEECCCSS-----CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEE
T ss_pred             EeCCCcEEE--EECCCCeeEEEEcCCcC-----CEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceE
Confidence            677999988  78888889999999999     999999999999999999999999999998877666543  345799


Q ss_pred             EEEEccCCCEEEEEEccccccccc
Q 041215           80 CSTFNTDGSIFAYSVCYDWSKGAE  103 (136)
Q Consensus        80 ~v~~sp~~~~l~s~~~dd~~~~~~  103 (136)
                      +++|+|++.++++|+.|......+
T Consensus       275 ~~~~s~~g~~l~~g~~d~~i~vwd  298 (340)
T 1got_B          275 SVSFSKSGRLLLAGYDDFNCNVWD  298 (340)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEE
T ss_pred             EEEECCCCCEEEEECCCCeEEEEE
Confidence            999999999999998876544433

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.49  E-value=1.9e-13  Score=103.73  Aligned_cols=95  Identities=19%  Similarity=0.283  Sum_probs=82.1

Q ss_pred             CCceeceEEEEEeeCCCC-------cceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCcceeeec-
Q 041215            1 VGSIEGRVGVHHLDDSQQ-------SKNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQRLKAM-   71 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~-------~~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~~~~~~-   71 (136)
                      +|+.||+|.+  ||..++       .....+.+|..     .|.+++|+|++ .+|++++.|+.|++||+.++..+..+ 
T Consensus        99 s~s~dg~v~v--w~~~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  171 (402)
T 2aq5_A           99 SGSEDCTVMV--WEIPDGGLVLPLREPVITLEGHTK-----RVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLG  171 (402)
T ss_dssp             EEETTSEEEE--EECCTTCCSSCBCSCSEEEECCSS-----CEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             EEeCCCeEEE--EEccCCCCccccCCceEEecCCCC-----eEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEe
Confidence            3678999988  555544       56788899999     99999999998 79999999999999999999988888 


Q ss_pred             -ccCCCceeEEEEccCCCEEEEEEcccccccc
Q 041215           72 -SRCGQPIPCSTFNTDGSIFAYSVCYDWSKGA  102 (136)
Q Consensus        72 -~~h~~~v~~v~~sp~~~~l~s~~~dd~~~~~  102 (136)
                       ..|...|.+++|+|++.+|++++.|......
T Consensus       172 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw  203 (402)
T 2aq5_A          172 PDVHPDTIYSVDWSRDGALICTSCRDKRVRVI  203 (402)
T ss_dssp             TTTCCSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred             cCCCCCceEEEEECCCCCEEEEEecCCcEEEE
Confidence             7899999999999999999999887754433

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.49  E-value=5.2e-13  Score=99.49  Aligned_cols=97  Identities=13%  Similarity=0.202  Sum_probs=71.5

Q ss_pred             CCceeceEEEEEeeCCCCcceeEE-Ee-eeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCC-------cceeeec
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTF-KC-HRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDS-------KQRLKAM   71 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l-~~-h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~-------~~~~~~~   71 (136)
                      +|+.||+|.+|.++.........+ .. |..     .|.+++|+|++.+|++++.|+.|++||+..       ...+..+
T Consensus        29 s~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~-----~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~  103 (330)
T 2hes_X           29 TGSTDRKIKLVSVKYDDFTLIDVLDETAHKK-----AIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAII  103 (330)
T ss_dssp             EEESSSCEEEEECSSSCCEEEEEECTTCCCS-----CEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEE
T ss_pred             EEcCCCEEEEEEecCCCeEEEEEEecCCccC-----CEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEE
Confidence            367899999844432222344455 33 778     999999999999999999999999999853       3456778


Q ss_pred             ccCCCceeEEEEccCCCEEEEEEcccccccc
Q 041215           72 SRCGQPIPCSTFNTDGSIFAYSVCYDWSKGA  102 (136)
Q Consensus        72 ~~h~~~v~~v~~sp~~~~l~s~~~dd~~~~~  102 (136)
                      .+|...|.+++|+|++.+|++|+.|......
T Consensus       104 ~~h~~~V~~v~~sp~g~~las~s~D~~v~iw  134 (330)
T 2hes_X          104 EGHENEVKGVAWSNDGYYLATCSRDKSVWIW  134 (330)
T ss_dssp             C----CEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred             cCCCCcEEEEEECCCCCEEEEEeCCCEEEEE
Confidence            8999999999999999999999887754433

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.49  E-value=1.8e-13  Score=103.83  Aligned_cols=98  Identities=19%  Similarity=0.247  Sum_probs=80.3

Q ss_pred             CCceeceEEEEEeeCCCCcceeEEEeeeC--CCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeec----ccC
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRD--GSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAM----SRC   74 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~--~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~----~~h   74 (136)
                      +||.||+|++  ||.+++.....+..+..  ..+...|.+++|+|++.+|++++.|+.|++||+.++..+..+    .+|
T Consensus       266 s~s~D~~i~l--wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h  343 (380)
T 3iz6_a          266 TGSDDGTCRL--FDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSH  343 (380)
T ss_dssp             EECSSSCEEE--EETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSC
T ss_pred             EEcCCCeEEE--EECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCC
Confidence            3788999988  78888888877765432  111124889999999999999999999999999988877665    579


Q ss_pred             CCceeEEEEccCCCEEEEEEcccccc
Q 041215           75 GQPIPCSTFNTDGSIFAYSVCYDWSK  100 (136)
Q Consensus        75 ~~~v~~v~~sp~~~~l~s~~~dd~~~  100 (136)
                      .+.|.+++|+|++.+|++|+.|...+
T Consensus       344 ~~~v~~l~~s~dg~~l~sgs~D~~i~  369 (380)
T 3iz6_a          344 EGRISCLGLSSDGSALCTGSWDKNLK  369 (380)
T ss_dssp             CCCCCEEEECSSSSEEEEECTTSCEE
T ss_pred             CCceEEEEECCCCCEEEEeeCCCCEE
Confidence            99999999999999999988876553

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.49  E-value=1.8e-13  Score=103.79  Aligned_cols=91  Identities=21%  Similarity=0.335  Sum_probs=78.0

Q ss_pred             CceeceEEEEEeeCC-CCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCC-----
Q 041215            2 GSIEGRVGVHHLDDS-QQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCG-----   75 (136)
Q Consensus         2 gs~dG~v~i~~~d~~-~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~-----   75 (136)
                      |+.||+|++  ||.+ .......+.+|..     .|.+++|+|++.+|++++.|+.|++||+.++..+..+..+.     
T Consensus       224 gs~D~~v~~--wd~~~~~~~~~~~~~h~~-----~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~  296 (380)
T 3iz6_a          224 GSCDTTVRL--WDLRITSRAVRTYHGHEG-----DINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDN  296 (380)
T ss_dssp             EETTSCEEE--EETTTTCCCCEEECCCSS-----CCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCC
T ss_pred             EECCCeEEE--EECCCCCcceEEECCcCC-----CeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccccccccc
Confidence            678999988  7766 4577788899999     99999999999999999999999999999988877765542     


Q ss_pred             --CceeEEEEccCCCEEEEEEccccc
Q 041215           76 --QPIPCSTFNTDGSIFAYSVCYDWS   99 (136)
Q Consensus        76 --~~v~~v~~sp~~~~l~s~~~dd~~   99 (136)
                        ..|.+++|+|++.++++|+.|...
T Consensus       297 ~~~~v~~~~~s~~g~~l~~g~~dg~i  322 (380)
T 3iz6_a          297 ELPIVTSVAFSISGRLLFAGYSNGDC  322 (380)
T ss_dssp             SSCSCSEEEECSSSSEEEEECTTSCE
T ss_pred             ccCceEEEEECCCCCEEEEEECCCCE
Confidence              358999999999999998877644

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.47  E-value=2.7e-13  Score=110.02  Aligned_cols=94  Identities=11%  Similarity=0.106  Sum_probs=81.6

Q ss_pred             CCceeceEEEEEeeCCC---CcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCc
Q 041215            1 VGSIEGRVGVHHLDDSQ---QSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQP   77 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~---~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~   77 (136)
                      +||.||+|++|.++...   +.....+.+|..     .|.+++|+|++.+|++++.|+.|++||+.++..+..+.+|...
T Consensus       400 s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~-----~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~  474 (694)
T 3dm0_A          400 SASRDKSIILWKLTKDDKAYGVAQRRLTGHSH-----FVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKD  474 (694)
T ss_dssp             EEETTSEEEEEECCCSTTCSCEEEEEEECCSS-----CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC
T ss_pred             EEeCCCcEEEEEccCCCcccccccceecCCCC-----cEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCC
Confidence            36889999996554321   334567889999     9999999999999999999999999999999999999999999


Q ss_pred             eeEEEEccCCCEEEEEEccccc
Q 041215           78 IPCSTFNTDGSIFAYSVCYDWS   99 (136)
Q Consensus        78 v~~v~~sp~~~~l~s~~~dd~~   99 (136)
                      |.+++|+|++.+|++|+.|...
T Consensus       475 v~~~~~s~~~~~l~s~s~D~~i  496 (694)
T 3dm0_A          475 VLSVAFSLDNRQIVSASRDRTI  496 (694)
T ss_dssp             EEEEEECTTSSCEEEEETTSCE
T ss_pred             EEEEEEeCCCCEEEEEeCCCEE
Confidence            9999999999999999887644

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.47  E-value=3.3e-13  Score=101.71  Aligned_cols=94  Identities=15%  Similarity=0.182  Sum_probs=78.8

Q ss_pred             CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC   80 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~   80 (136)
                      +|+.||+|++  ||.+.......+..+.   ..+.+.+++|+|++.+|++++.|+.|++||+.++..+..+.+|...|.+
T Consensus       257 s~s~D~~v~l--wd~~~~~~~~~~~~~~---~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~  331 (354)
T 2pbi_B          257 SGSDDATCRL--YDLRADREVAIYSKES---IIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVST  331 (354)
T ss_dssp             EEETTSCEEE--EETTTTEEEEEECCTT---CCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEE
T ss_pred             EEeCCCeEEE--EECCCCcEEEEEcCCC---cccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEE
Confidence            3678999988  7777666655554321   2237899999999999999999999999999999989999999999999


Q ss_pred             EEEccCCCEEEEEEccccc
Q 041215           81 STFNTDGSIFAYSVCYDWS   99 (136)
Q Consensus        81 v~~sp~~~~l~s~~~dd~~   99 (136)
                      ++|+|++.+|++|+.|...
T Consensus       332 l~~spdg~~l~sgs~D~~v  350 (354)
T 2pbi_B          332 LRVSPDGTAFCSGSWDHTL  350 (354)
T ss_dssp             EEECTTSSCEEEEETTSEE
T ss_pred             EEECCCCCEEEEEcCCCCE
Confidence            9999999999999877643

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.46  E-value=2.6e-13  Score=100.62  Aligned_cols=94  Identities=12%  Similarity=0.170  Sum_probs=76.4

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeC--CCCEEEEEcCCCcEEEEeCCCc--ceeeecccCCCc
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHP--IHHTFATAGSDGAFNFWDKDSK--QRLKAMSRCGQP   77 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p--~~~~l~s~~~dg~v~vwd~~~~--~~~~~~~~h~~~   77 (136)
                      ||.||+|++|.+..........+.+|..     .|.+++|++  ++.+|++++.|+.|++||+.++  .....+.+|...
T Consensus        31 gs~D~~v~lwd~~~~~~~~~~~l~gH~~-----~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~  105 (316)
T 3bg1_A           31 CSSDRSVKIFDVRNGGQILIADLRGHEG-----PVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSS  105 (316)
T ss_dssp             EETTTEEEEEEEETTEEEEEEEEECCSS-----CEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSC
T ss_pred             EeCCCeEEEEEecCCCcEEEEEEcCCCc-----cEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCc
Confidence            6789999995443322235678899999     999999975  4789999999999999999886  356677889999


Q ss_pred             eeEEEEccC--CCEEEEEEcccccc
Q 041215           78 IPCSTFNTD--GSIFAYSVCYDWSK  100 (136)
Q Consensus        78 v~~v~~sp~--~~~l~s~~~dd~~~  100 (136)
                      |++++|+|+  +.+|++|+.|....
T Consensus       106 V~~v~~~p~~~g~~lasgs~D~~i~  130 (316)
T 3bg1_A          106 VNSVCWAPHDYGLILACGSSDGAIS  130 (316)
T ss_dssp             CCEEEECCTTTCSCEEEECSSSCEE
T ss_pred             eEEEEECCCCCCcEEEEEcCCCCEE
Confidence            999999998  77899888776443

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.46  E-value=9.7e-13  Score=100.75  Aligned_cols=91  Identities=10%  Similarity=0.194  Sum_probs=78.9

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEc--CCCcEEEEeCCCcceeeecccCCCcee
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAG--SDGAFNFWDKDSKQRLKAMSRCGQPIP   79 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~--~dg~v~vwd~~~~~~~~~~~~h~~~v~   79 (136)
                      ||.||+|++  ||..++.....+.. ..     .+.++.|+|++..+++++  .|+.|++||+.++..+.++.+|.+.|+
T Consensus       297 gs~D~~I~i--wd~~t~~~~~~~~~-~~-----~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~  368 (420)
T 4gga_A          297 GTSDRHIRI--WNVCSGACLSAVDA-HS-----QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVL  368 (420)
T ss_dssp             CTTTCEEEE--EETTTTEEEEEEEC-SS-----CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEE
T ss_pred             ecCCCEEEE--EeCCccccceeecc-cc-----ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEE
Confidence            578899988  78888888888764 45     788999999998777654  689999999999999999999999999


Q ss_pred             EEEEccCCCEEEEEEcccccc
Q 041215           80 CSTFNTDGSIFAYSVCYDWSK  100 (136)
Q Consensus        80 ~v~~sp~~~~l~s~~~dd~~~  100 (136)
                      +|+|+|++.+|+||+.|...+
T Consensus       369 ~l~~spdg~~l~S~s~D~tvr  389 (420)
T 4gga_A          369 SLTMSPDGATVASAAADETLR  389 (420)
T ss_dssp             EEEECTTSSCEEEEETTTEEE
T ss_pred             EEEEcCCCCEEEEEecCCeEE
Confidence            999999999999998887554

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.46  E-value=4.6e-13  Score=99.36  Aligned_cols=88  Identities=19%  Similarity=0.274  Sum_probs=78.0

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS   81 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v   81 (136)
                      |+.||.|.+  ||.+..+....+.+|..     .|.+++|+|++.+|++++.|+.|++||+.++..+..+..+ ..|.++
T Consensus       172 ~~~d~~i~~--wd~~~~~~~~~~~~h~~-----~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~  243 (319)
T 3frx_A          172 AGNDKMVKA--WNLNQFQIEADFIGHNS-----NINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSL  243 (319)
T ss_dssp             EETTSCEEE--EETTTTEEEEEECCCCS-----CEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC-SCEEEE
T ss_pred             EeCCCEEEE--EECCcchhheeecCCCC-----cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CcEEEE
Confidence            567889988  77788888888889999     9999999999999999999999999999999888888654 789999


Q ss_pred             EEccCCCEEEEEEccc
Q 041215           82 TFNTDGSIFAYSVCYD   97 (136)
Q Consensus        82 ~~sp~~~~l~s~~~dd   97 (136)
                      +|+|++.+++++..+.
T Consensus       244 ~~sp~~~~la~~~~~~  259 (319)
T 3frx_A          244 AFSPNRYWLAAATATG  259 (319)
T ss_dssp             EECSSSSEEEEEETTE
T ss_pred             EEcCCCCEEEEEcCCC
Confidence            9999999999876544

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.45  E-value=3.2e-13  Score=101.96  Aligned_cols=92  Identities=20%  Similarity=0.203  Sum_probs=73.0

Q ss_pred             CceeceEEEEEeeCCCCcce----eEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCc
Q 041215            2 GSIEGRVGVHHLDDSQQSKN----FTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQP   77 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~----~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~   77 (136)
                      |+.||+|++  ||..+++..    ....+|..     .|.+++|+|++.+|++++.|+.|++||+.++..+..+.+|...
T Consensus       111 ~s~dg~v~l--Wd~~~~~~~~~~~~~~~~h~~-----~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~  183 (357)
T 4g56_B          111 ASDSGAVEL--WEILEKESLLVNKFAKYEHDD-----IVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSE  183 (357)
T ss_dssp             EETTSCEEE--C--------CCCCEEECCCSS-----CEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred             EECCCEEEE--eeccccceeEEEeeccCCCCC-----CEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCC
Confidence            577899988  666554332    34446888     9999999999999999999999999999999999999999999


Q ss_pred             eeEEEEccCCC-EEEEEEcccccc
Q 041215           78 IPCSTFNTDGS-IFAYSVCYDWSK  100 (136)
Q Consensus        78 v~~v~~sp~~~-~l~s~~~dd~~~  100 (136)
                      |++++|++++. ++++++.|....
T Consensus       184 v~~v~~s~~~~~~~~s~~~dg~v~  207 (357)
T 4g56_B          184 VNCVAACPGKDTIFLSCGEDGRIL  207 (357)
T ss_dssp             EEEEEECTTCSSCEEEEETTSCEE
T ss_pred             EEEEEEccCCCceeeeeccCCceE
Confidence            99999999875 677777766443

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.44  E-value=4.9e-13  Score=102.05  Aligned_cols=95  Identities=9%  Similarity=-0.026  Sum_probs=69.9

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCC------------------------------------
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIH------------------------------------   45 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~------------------------------------   45 (136)
                      ||.|++|+|  ||.++++.+++|.+|..  +...+.+++|+|++                                    
T Consensus       199 gS~D~TIkI--WDl~TGk~l~tL~g~~~--~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~  274 (356)
T 2w18_A          199 TTIMNNIVI--WNLKTGQLLKKMHIDDS--YQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVG  274 (356)
T ss_dssp             EETTSEEEE--EETTTCCEEEEEECCC-----CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEE
T ss_pred             ecCCCcEEE--EECCCCcEEEEEcCCCc--ceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEE
Confidence            688999998  88899999999876432  11134344444433                                    


Q ss_pred             ---------C------------EEEEEcCCCcEEEEeCCCcceeeecccCCCcee-EEEEccCCCEEEEEEcccccc
Q 041215           46 ---------H------------TFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIP-CSTFNTDGSIFAYSVCYDWSK  100 (136)
Q Consensus        46 ---------~------------~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~-~v~~sp~~~~l~s~~~dd~~~  100 (136)
                               +            ++++++.|++|++||+.++++++++.+|...+. +++|+|++++|++|+.|...+
T Consensus       275 v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIk  351 (356)
T 2w18_A          275 VMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIF  351 (356)
T ss_dssp             EEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEE
T ss_pred             EEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEE
Confidence                     2            357777899999999999999999999977655 689999999999998776543

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.44  E-value=8.9e-13  Score=95.96  Aligned_cols=98  Identities=15%  Similarity=0.259  Sum_probs=80.3

Q ss_pred             CceeceEEEEEeeCCCC--cceeEEEeeeCCCCccceeEEEEeC--CCCEEEEEcCCCcEEEEeCCCc---------cee
Q 041215            2 GSIEGRVGVHHLDDSQQ--SKNFTFKCHRDGSEIYSVNSLNFHP--IHHTFATAGSDGAFNFWDKDSK---------QRL   68 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~--~~~~~l~~h~~~~~~~~v~~l~~~p--~~~~l~s~~~dg~v~vwd~~~~---------~~~   68 (136)
                      |+.||.|.+|.++....  .....+.+|..     .|.+++|+|  ++.+|++++.|+.|++||+.++         ..+
T Consensus        29 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~  103 (351)
T 3f3f_A           29 CSSDQHIKVFKLDKDTSNWELSDSWRAHDS-----SIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKL  103 (351)
T ss_dssp             EETTSEEEEEEECSSSCCEEEEEEEECCSS-----CEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEE
T ss_pred             eeCCCeEEEEECCCCCCcceecceeccCCC-----cEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCccee
Confidence            67799999965543222  45677788999     999999999  5899999999999999999876         456


Q ss_pred             eecccCCCceeEEEEccC--CCEEEEEEcccccccccc
Q 041215           69 KAMSRCGQPIPCSTFNTD--GSIFAYSVCYDWSKGAEN  104 (136)
Q Consensus        69 ~~~~~h~~~v~~v~~sp~--~~~l~s~~~dd~~~~~~~  104 (136)
                      ..+..|...|.+++|+|+  +.++++++.|......+.
T Consensus       104 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~  141 (351)
T 3f3f_A          104 CTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDA  141 (351)
T ss_dssp             EEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEEC
T ss_pred             eeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecC
Confidence            778889999999999999  999999988875554443

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.44  E-value=1.1e-12  Score=96.28  Aligned_cols=96  Identities=18%  Similarity=0.224  Sum_probs=76.1

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCC-------------CCEEEEEcCCCcEEEEeCCCcc--
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPI-------------HHTFATAGSDGAFNFWDKDSKQ--   66 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~-------------~~~l~s~~~dg~v~vwd~~~~~--   66 (136)
                      |+.||+|++|.++.........+.+|..     .|.+++|+|+             +.+|++++.|+.|++||+.++.  
T Consensus       119 ~s~d~~v~~wd~~~~~~~~~~~~~~h~~-----~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~  193 (297)
T 2pm7_B          119 ASSDGKVSVVEFKENGTTSPIIIDAHAI-----GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT  193 (297)
T ss_dssp             EETTSEEEEEEBCSSSCBCCEEEECCSS-----CEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTE
T ss_pred             EECCCcEEEEEecCCCceeeeeeecccC-----ccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCce
Confidence            6789999884443222223467788988     9999999997             4699999999999999998765  


Q ss_pred             --eeeecccCCCceeEEEEccCC---CEEEEEEcccccccc
Q 041215           67 --RLKAMSRCGQPIPCSTFNTDG---SIFAYSVCYDWSKGA  102 (136)
Q Consensus        67 --~~~~~~~h~~~v~~v~~sp~~---~~l~s~~~dd~~~~~  102 (136)
                        ....+.+|...|.+++|+|++   .+|++++.|...+..
T Consensus       194 ~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iW  234 (297)
T 2pm7_B          194 YVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIW  234 (297)
T ss_dssp             EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEE
T ss_pred             EEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEE
Confidence              566788999999999999985   789988887754433

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.43  E-value=2.5e-12  Score=94.83  Aligned_cols=96  Identities=19%  Similarity=0.183  Sum_probs=78.9

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS   81 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v   81 (136)
                      |+.||.|.+|.++.........+..|..     .|.+++|+|++.+|++++.|+.|++||+.++..+. +..|...|.++
T Consensus        60 ~~~dg~i~iw~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~  133 (368)
T 3mmy_A           60 GSWANDVRCWEVQDSGQTIPKAQQMHTG-----PVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTI  133 (368)
T ss_dssp             EETTSEEEEEEECTTSCEEEEEEEECSS-----CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEE
T ss_pred             ECCCCcEEEEEcCCCCceeEEEeccccC-----CEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEE
Confidence            6778999885553323334478888999     99999999999999999999999999999887655 55799999999


Q ss_pred             EE--ccCCCEEEEEEccccccccc
Q 041215           82 TF--NTDGSIFAYSVCYDWSKGAE  103 (136)
Q Consensus        82 ~~--sp~~~~l~s~~~dd~~~~~~  103 (136)
                      +|  ++++.++++++.|......+
T Consensus       134 ~~~~~~~~~~l~~~~~dg~i~vwd  157 (368)
T 3mmy_A          134 HWIKAPNYSCVMTGSWDKTLKFWD  157 (368)
T ss_dssp             EEEECSSCEEEEEEETTSEEEEEC
T ss_pred             EEEeCCCCCEEEEccCCCcEEEEE
Confidence            99  89999999998877554443

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.43  E-value=7.7e-13  Score=97.08  Aligned_cols=91  Identities=14%  Similarity=0.125  Sum_probs=67.5

Q ss_pred             eeceEEEEEee--CCCCcceeEEEeeeCCCCccceeEEEEeCC-CCEEEEEcCCCcEEEEeCCCcc-----eeeecccCC
Q 041215            4 IEGRVGVHHLD--DSQQSKNFTFKCHRDGSEIYSVNSLNFHPI-HHTFATAGSDGAFNFWDKDSKQ-----RLKAMSRCG   75 (136)
Q Consensus         4 ~dG~v~i~~~d--~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~-~~~l~s~~~dg~v~vwd~~~~~-----~~~~~~~h~   75 (136)
                      ..|+..++...  .+......+|++|.+     .|++|+|+|+ +++|++++.|+.|++||+.+..     ....+.+|.
T Consensus        12 d~g~~~~~~~~~~~~~~~l~~tL~GH~~-----~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~   86 (340)
T 4aow_A           12 DLGTENLYFQSMMTEQMTLRGTLKGHNG-----WVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHS   86 (340)
T ss_dssp             --------------CEEEEEEEECCCSS-----CEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCS
T ss_pred             CCCCccEEEEEccCCceEEEEEECCccC-----CEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCC
Confidence            34554443333  234455678999999     9999999998 4899999999999999987643     456778899


Q ss_pred             CceeEEEEccCCCEEEEEEccccc
Q 041215           76 QPIPCSTFNTDGSIFAYSVCYDWS   99 (136)
Q Consensus        76 ~~v~~v~~sp~~~~l~s~~~dd~~   99 (136)
                      ..|.+++|+|++.++++++.|...
T Consensus        87 ~~V~~~~~s~dg~~l~s~~~d~~i  110 (340)
T 4aow_A           87 HFVSDVVISSDGQFALSGSWDGTL  110 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEE
T ss_pred             CCEEEEEECCCCCEEEEEcccccc
Confidence            999999999999999999887643

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.43  E-value=2.2e-13  Score=108.60  Aligned_cols=94  Identities=5%  Similarity=0.014  Sum_probs=81.3

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS   81 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v   81 (136)
                      ||.||+|++  ||.++++...++.+|...   ..|.+++|+|++..|++++.|+.|++||+.++.++..+.+|.+.|++|
T Consensus       329 ~S~D~tvkl--WD~~~~~~~~~~~~~~~~---~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sv  403 (524)
T 2j04_B          329 VAVDGYFYI--FNPKDIATTKTTVSRFRG---SNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAI  403 (524)
T ss_dssp             EETTSEEEE--ECGGGHHHHCEEEEECSC---CSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEE
T ss_pred             eccCCeEEE--EECCCCCccccccccccc---CcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEE
Confidence            688999988  888888877788777530   047899999999999999999999999999988888888999999999


Q ss_pred             EEccCCCEEEEEEcccccc
Q 041215           82 TFNTDGSIFAYSVCYDWSK  100 (136)
Q Consensus        82 ~~sp~~~~l~s~~~dd~~~  100 (136)
                      +|+|++++|++|+.|....
T Consensus       404 a~Sp~g~~l~Sgs~Dgtv~  422 (524)
T 2j04_B          404 GVSRLHPMVLAGSADGSLI  422 (524)
T ss_dssp             ECCSSCCBCEEEETTTEEE
T ss_pred             EeCCCCCeEEEEECCCEEE
Confidence            9999999999998877543

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.42  E-value=1.7e-12  Score=96.30  Aligned_cols=99  Identities=10%  Similarity=0.178  Sum_probs=84.4

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCC--CCEEEEEcCCCcEEEEeCCCcc--eeeecccCCCc
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPI--HHTFATAGSDGAFNFWDKDSKQ--RLKAMSRCGQP   77 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~--~~~l~s~~~dg~v~vwd~~~~~--~~~~~~~h~~~   77 (136)
                      |+.||.|.+|.++..+......+.+|..     .|.+++|+++  +.+|++++.|+.|++||+.++.  .+..+..|...
T Consensus        29 ~~~dg~i~iw~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~  103 (379)
T 3jrp_A           29 CSSDKTIKIFEVEGETHKLIDTLTGHEG-----PVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSAS  103 (379)
T ss_dssp             EETTSCEEEEEEETTEEEEEEEECCCSS-----CEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSC
T ss_pred             EECCCcEEEEecCCCcceeeeEecCCCC-----cEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcc
Confidence            5679999997766556777888889999     9999999877  8999999999999999999886  67778889999


Q ss_pred             eeEEEEccC--CCEEEEEEccccccccccc
Q 041215           78 IPCSTFNTD--GSIFAYSVCYDWSKGAENH  105 (136)
Q Consensus        78 v~~v~~sp~--~~~l~s~~~dd~~~~~~~~  105 (136)
                      |.+++|+|+  +.++++++.|.........
T Consensus       104 v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~  133 (379)
T 3jrp_A          104 VNSVQWAPHEYGPLLLVASSDGKVSVVEFK  133 (379)
T ss_dssp             EEEEEECCGGGCSEEEEEETTSEEEEEECC
T ss_pred             eEEEEeCCCCCCCEEEEecCCCcEEEEecC
Confidence            999999999  9999999888765544443

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.42  E-value=9.7e-13  Score=95.76  Aligned_cols=97  Identities=13%  Similarity=0.153  Sum_probs=76.6

Q ss_pred             CceeceEEEEEeeCCCCc--ceeEEEeeeCCCCccceeEEEEeCCC----CEEEEEcCCCcEEEEeCCCc----------
Q 041215            2 GSIEGRVGVHHLDDSQQS--KNFTFKCHRDGSEIYSVNSLNFHPIH----HTFATAGSDGAFNFWDKDSK----------   65 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~--~~~~l~~h~~~~~~~~v~~l~~~p~~----~~l~s~~~dg~v~vwd~~~~----------   65 (136)
                      |+.||.+.+  ++...+.  ....+.+|..     .|.+++|+|++    .+|++++.|+.|++||+..+          
T Consensus       188 ~~~~~~~~~--~~~~~~~~~~~~~~~~h~~-----~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  260 (351)
T 3f3f_A          188 SALEQAIIY--QRGKDGKLHVAAKLPGHKS-----LIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESL  260 (351)
T ss_dssp             EETTEEEEE--EECTTSCEEEEEECCCCCS-----CEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------
T ss_pred             ecCCCcEEE--EccCCCceeeeeecCCCCc-----ceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcc
Confidence            455676644  3334333  3667778888     99999999998    79999999999999998764          


Q ss_pred             ------------------------------------ceeeecccCCCceeEEEEccCCCEEEEEEccccccccccc
Q 041215           66 ------------------------------------QRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAENH  105 (136)
Q Consensus        66 ------------------------------------~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd~~~~~~~~  105 (136)
                                                          ..+..+.+|...|++++|+|++.+|++++.|.........
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~  336 (351)
T 3f3f_A          261 TNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKAT  336 (351)
T ss_dssp             ------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             cceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecC
Confidence                                                4566778899999999999999999999888765444443

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.42  E-value=2e-12  Score=97.08  Aligned_cols=91  Identities=20%  Similarity=0.294  Sum_probs=81.1

Q ss_pred             Ccee---ceEEEEEeeCCCCcceeEEEe-------------eeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCc
Q 041215            2 GSIE---GRVGVHHLDDSQQSKNFTFKC-------------HRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSK   65 (136)
Q Consensus         2 gs~d---G~v~i~~~d~~~~~~~~~l~~-------------h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~   65 (136)
                      |+.|   |.|.+  ||.++++....+..             |..     .|.+++|+|++.+|++++.|+.|++||+.++
T Consensus       251 ~~~d~~~g~i~i--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  323 (397)
T 1sq9_A          251 AHDSNSFGCITL--YETEFGERIGSLSVPTHSSQASLGEFAHSS-----WVMSLSFNDSGETLCSAGWDGKLRFWDVKTK  323 (397)
T ss_dssp             EEEETTEEEEEE--EETTTCCEEEEECBC--------CCBSBSS-----CEEEEEECSSSSEEEEEETTSEEEEEETTTT
T ss_pred             EecCCCCceEEE--EECCCCcccceeccCcccccccccccccCC-----cEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            4567   78877  88888888899888             888     9999999999999999999999999999999


Q ss_pred             ceeeecc------cC---------------CCceeEEEEccCC----------CEEEEEEccccc
Q 041215           66 QRLKAMS------RC---------------GQPIPCSTFNTDG----------SIFAYSVCYDWS   99 (136)
Q Consensus        66 ~~~~~~~------~h---------------~~~v~~v~~sp~~----------~~l~s~~~dd~~   99 (136)
                      ..+..+.      .|               ...|.+++|+|++          .+|++++.|...
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i  388 (397)
T 1sq9_A          324 ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSI  388 (397)
T ss_dssp             EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEE
T ss_pred             ceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcE
Confidence            9988888      77               8999999999998          799988877654

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.42  E-value=1.4e-12  Score=94.47  Aligned_cols=90  Identities=16%  Similarity=0.240  Sum_probs=79.0

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS   81 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v   81 (136)
                      |+.||.|.+  ||.++++....+..|..     .|.+++|+|++ .|++++.|+.|++||+.++..+..+..|...|.++
T Consensus       201 ~~~dg~i~i--~d~~~~~~~~~~~~~~~-----~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~  272 (313)
T 3odt_A          201 CSNDGLIKL--VDMHTGDVLRTYEGHES-----FVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSV  272 (313)
T ss_dssp             EETTSEEEE--EETTTCCEEEEEECCSS-----CEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEE
T ss_pred             ccCCCeEEE--EECCchhhhhhhhcCCc-----eEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEE
Confidence            567888877  78888899999999999     99999999999 58899999999999999999999999999999999


Q ss_pred             EEccCCCEEEEEEcccccc
Q 041215           82 TFNTDGSIFAYSVCYDWSK  100 (136)
Q Consensus        82 ~~sp~~~~l~s~~~dd~~~  100 (136)
                      +|+|++.++ +++.|+...
T Consensus       273 ~~~~~~~~~-~~~~dg~i~  290 (313)
T 3odt_A          273 DCMSNGDII-VGSSDNLVR  290 (313)
T ss_dssp             EECTTSCEE-EEETTSCEE
T ss_pred             EEccCCCEE-EEeCCCcEE
Confidence            999999854 566666443

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.42  E-value=1.8e-12  Score=95.06  Aligned_cols=84  Identities=17%  Similarity=0.215  Sum_probs=71.4

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS   81 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v   81 (136)
                      |+.|+.|.+  ||.++++....+.+|..     .|.+++|+|++.+|++++.|+.|++||+.+...+..+..+ ..|.++
T Consensus       191 ~~~d~~i~i--~d~~~~~~~~~~~~h~~-----~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~  262 (340)
T 4aow_A          191 CGWDKLVKV--WNLANCKLKTNHIGHTG-----YLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINAL  262 (340)
T ss_dssp             EETTSCEEE--EETTTTEEEEEECCCSS-----CEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-SCEEEE
T ss_pred             EcCCCEEEE--EECCCCceeeEecCCCC-----cEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-ceEEee
Confidence            456788877  78888889999999999     9999999999999999999999999999988877777544 678888


Q ss_pred             EEccCCCEEEEE
Q 041215           82 TFNTDGSIFAYS   93 (136)
Q Consensus        82 ~~sp~~~~l~s~   93 (136)
                      +|+|++.+++.+
T Consensus       263 ~~~~~~~~~~~~  274 (340)
T 4aow_A          263 CFSPNRYWLCAA  274 (340)
T ss_dssp             EECSSSSEEEEE
T ss_pred             ecCCCCceeecc
Confidence            888887766544

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.42  E-value=4.5e-12  Score=92.15  Aligned_cols=91  Identities=10%  Similarity=0.176  Sum_probs=75.2

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEc--CCCcEEEEeCCCcceeeecccCCCcee
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAG--SDGAFNFWDKDSKQRLKAMSRCGQPIP   79 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~--~dg~v~vwd~~~~~~~~~~~~h~~~v~   79 (136)
                      |+.+++|.+  ||.......... .+..     .+..+.|+|.+..+++++  .|+.|++||+.++..+.++.+|.+.|+
T Consensus       217 ~~~~~~i~l--wd~~~~~~~~~~-~~~~-----~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~  288 (318)
T 4ggc_A          217 GTSDRHIRI--WNVCSGACLSAV-DAHS-----QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVL  288 (318)
T ss_dssp             CTTTCEEEE--EETTTCCEEEEE-ECSS-----CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEE
T ss_pred             cCCCCEEEE--Eecccccccccc-ccee-----eeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEE
Confidence            456778877  666666655553 4666     899999999998766544  789999999999999999999999999


Q ss_pred             EEEEccCCCEEEEEEcccccc
Q 041215           80 CSTFNTDGSIFAYSVCYDWSK  100 (136)
Q Consensus        80 ~v~~sp~~~~l~s~~~dd~~~  100 (136)
                      +|+|+|++.+|++|+.|...+
T Consensus       289 ~l~~spdg~~l~S~s~D~~v~  309 (318)
T 4ggc_A          289 SLTMSPDGATVASAAADETLR  309 (318)
T ss_dssp             EEEECTTSSCEEEEETTTEEE
T ss_pred             EEEEcCCCCEEEEEecCCeEE
Confidence            999999999999998887554

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.42  E-value=1.5e-12  Score=97.73  Aligned_cols=97  Identities=18%  Similarity=0.248  Sum_probs=84.6

Q ss_pred             CCceeceEEEEEeeCCCCcceeEEEe---e---eCCCCccceeEEEEeCCCCEEEEEcCC---CcEEEEeCCCcceeeec
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTFKC---H---RDGSEIYSVNSLNFHPIHHTFATAGSD---GAFNFWDKDSKQRLKAM   71 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l~~---h---~~~~~~~~v~~l~~~p~~~~l~s~~~d---g~v~vwd~~~~~~~~~~   71 (136)
                      +|+.||.|.+  ||.++++....+..   |   ..     .|.+++|+|++.+|++++.|   +.|++||+.++..+..+
T Consensus       202 ~~~~dg~i~i--~d~~~~~~~~~~~~~~~h~~~~~-----~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~  274 (397)
T 1sq9_A          202 TGFNNGTVQI--SELSTLRPLYNFESQHSMINNSN-----SIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSL  274 (397)
T ss_dssp             EECTTSEEEE--EETTTTEEEEEEECCC---CCCC-----CEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEE
T ss_pred             EEeCCCcEEE--EECCCCceeEEEeccccccccCC-----ccceEEECCCCCEEEEEecCCCCceEEEEECCCCccccee
Confidence            3677898887  78888888999988   8   88     99999999999999999999   99999999999989888


Q ss_pred             cc-------------CCCceeEEEEccCCCEEEEEEcccccccccc
Q 041215           72 SR-------------CGQPIPCSTFNTDGSIFAYSVCYDWSKGAEN  104 (136)
Q Consensus        72 ~~-------------h~~~v~~v~~sp~~~~l~s~~~dd~~~~~~~  104 (136)
                      ..             |...|.+++|+|++.+|++++.|........
T Consensus       275 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  320 (397)
T 1sq9_A          275 SVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV  320 (397)
T ss_dssp             CBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred             ccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence            88             9999999999999999999988775544433

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.41  E-value=2.1e-13  Score=102.10  Aligned_cols=92  Identities=13%  Similarity=0.171  Sum_probs=74.4

Q ss_pred             CCceeceEEEEEeeCCCC--cceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcc---eeeecccCC
Q 041215            1 VGSIEGRVGVHHLDDSQQ--SKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQ---RLKAMSRCG   75 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~--~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~---~~~~~~~h~   75 (136)
                      +|+.||.|.+|..  .++  .....+.+|..     .|.+++|+|++.+|++++.|+.|++||+.++.   ....+..|.
T Consensus        28 ~~~~d~~i~iw~~--~~~~~~~~~~~~~h~~-----~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~  100 (377)
T 3dwl_C           28 TTTATNQVELYEQ--DGNGWKHARTFSDHDK-----IVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLN  100 (377)
T ss_dssp             CCCSSSCBCEEEE--ETTEEEECCCBCCCSS-----CEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCS
T ss_pred             EecCCCEEEEEEc--cCCceEEEEEEecCCc-----eEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccC
Confidence            4678999998554  444  67778888999     99999999999999999999999999999876   566778899


Q ss_pred             CceeEEEEccCCCEEEEEEccccc
Q 041215           76 QPIPCSTFNTDGSIFAYSVCYDWS   99 (136)
Q Consensus        76 ~~v~~v~~sp~~~~l~s~~~dd~~   99 (136)
                      ..|.+++|+|++.+|++++.|...
T Consensus       101 ~~v~~~~~~~~~~~l~~~~~d~~i  124 (377)
T 3dwl_C          101 RAATFVRWSPNEDKFAVGSGARVI  124 (377)
T ss_dssp             SCEEEEECCTTSSCCEEEESSSCE
T ss_pred             CceEEEEECCCCCEEEEEecCCeE
Confidence            999999999999999998887644

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.41  E-value=2.7e-12  Score=95.82  Aligned_cols=90  Identities=16%  Similarity=0.203  Sum_probs=76.6

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeec---ccCCCce
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAM---SRCGQPI   78 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~---~~h~~~v   78 (136)
                      ||.||+|++  ||.++++....+.+|..     .|.+++|+|++.+|++++.|+.|++||+... .....   ..|...|
T Consensus        94 ~s~D~~v~l--wd~~~~~~~~~~~~h~~-----~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v  165 (343)
T 2xzm_R           94 SSWDKTLRL--WDLRTGTTYKRFVGHQS-----EVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWV  165 (343)
T ss_dssp             EETTSEEEE--EETTSSCEEEEEECCCS-----CEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCE
T ss_pred             EcCCCcEEE--EECCCCcEEEEEcCCCC-----cEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCcee
Confidence            678999988  78888899999999999     9999999999999999999999999999743 33332   3688999


Q ss_pred             eEEEEccCC----------CEEEEEEccccc
Q 041215           79 PCSTFNTDG----------SIFAYSVCYDWS   99 (136)
Q Consensus        79 ~~v~~sp~~----------~~l~s~~~dd~~   99 (136)
                      .+++|+|++          .++++++.|...
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i  196 (343)
T 2xzm_R          166 SCVRYSPIMKSANKVQPFAPYFASVGWDGRL  196 (343)
T ss_dssp             EEEEECCCCCSCSCCCSSCCEEEEEETTSEE
T ss_pred             eeeeeccccccccccCCCCCEEEEEcCCCEE
Confidence            999999987          689988877644

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.41  E-value=2.1e-12  Score=95.24  Aligned_cols=87  Identities=16%  Similarity=0.197  Sum_probs=79.5

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS   81 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v   81 (136)
                      |+.||.|.+  ||..+++....+..|..     .|.+++|+|++.+|++++.|+.|++||+.++..+..+. +...|.++
T Consensus        50 ~~~dg~i~v--wd~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~  121 (369)
T 3zwl_B           50 CSKDSSASV--WYSLNGERLGTLDGHTG-----TIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRV  121 (369)
T ss_dssp             EESSSCEEE--EETTTCCEEEEECCCSS-----CEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEE
T ss_pred             EeCCCEEEE--EeCCCchhhhhhhhcCC-----cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEE
Confidence            567898988  77788899999999999     99999999999999999999999999999998888886 88999999


Q ss_pred             EEccCCCEEEEEEcc
Q 041215           82 TFNTDGSIFAYSVCY   96 (136)
Q Consensus        82 ~~sp~~~~l~s~~~d   96 (136)
                      +|+|++.++++++.+
T Consensus       122 ~~~~~~~~l~~~~~~  136 (369)
T 3zwl_B          122 EFSPCGNYFLAILDN  136 (369)
T ss_dssp             EECTTSSEEEEEECC
T ss_pred             EEccCCCEEEEecCC
Confidence            999999999988776

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.41  E-value=2.1e-13  Score=104.09  Aligned_cols=99  Identities=11%  Similarity=0.049  Sum_probs=78.1

Q ss_pred             CceeceEEEEEeeCCCC---cceeEEEeeeCCCCccceeEEEEeC--------CCCEEEEEcCCCcEEEEeCCCcceeee
Q 041215            2 GSIEGRVGVHHLDDSQQ---SKNFTFKCHRDGSEIYSVNSLNFHP--------IHHTFATAGSDGAFNFWDKDSKQRLKA   70 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~---~~~~~l~~h~~~~~~~~v~~l~~~p--------~~~~l~s~~~dg~v~vwd~~~~~~~~~   70 (136)
                      |+.|++|++|..+....   .....+.+|.+     .|.+++|+|        ++++|++++.|++|++||+.++..+..
T Consensus       107 ~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~-----~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~  181 (393)
T 4gq1_A          107 VCQDNTVRLIITKNETIITQHVLGGKSGHHN-----FVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILA  181 (393)
T ss_dssp             EETTSCEEEEEEETTEEEEEEEECTTTSCSS-----CEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEE
T ss_pred             EeCCCcEEEEECCCCccceeeeecccCCCCC-----ceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeee
Confidence            67899999955433211   12334567888     999999998        788999999999999999988877777


Q ss_pred             cccCCCceeEEEEccCCC-EEEEEEccccccccccc
Q 041215           71 MSRCGQPIPCSTFNTDGS-IFAYSVCYDWSKGAENH  105 (136)
Q Consensus        71 ~~~h~~~v~~v~~sp~~~-~l~s~~~dd~~~~~~~~  105 (136)
                      +..|..+|.+++|+|++. +|++++.|...+..+..
T Consensus       182 ~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~  217 (393)
T 4gq1_A          182 GYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWT  217 (393)
T ss_dssp             EEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETT
T ss_pred             ecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECC
Confidence            888999999999999875 78888887765554443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.41  E-value=1.3e-12  Score=106.43  Aligned_cols=91  Identities=9%  Similarity=0.035  Sum_probs=83.2

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS   81 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v   81 (136)
                      |+.||.|.+  ||..++.....+..|..     +|.+++|+|++.+|++++.|+.|++||+.++..+..+.+|.+.|.++
T Consensus        31 ~~~~g~v~i--wd~~~~~~~~~~~~~~~-----~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~  103 (814)
T 3mkq_A           31 TLYSGRVEI--WNYETQVEVRSIQVTET-----PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSI  103 (814)
T ss_dssp             EETTSEEEE--EETTTTEEEEEEECCSS-----CEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred             EeCCCEEEE--EECCCCceEEEEecCCC-----cEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEE
Confidence            566888887  77788889999999999     99999999999999999999999999999999999999999999999


Q ss_pred             EEccCCCEEEEEEccccc
Q 041215           82 TFNTDGSIFAYSVCYDWS   99 (136)
Q Consensus        82 ~~sp~~~~l~s~~~dd~~   99 (136)
                      +|+|++.++++++.|...
T Consensus       104 ~~s~~~~~l~~~~~dg~i  121 (814)
T 3mkq_A          104 AVHPTKPYVLSGSDDLTV  121 (814)
T ss_dssp             EECSSSSEEEEEETTSEE
T ss_pred             EEeCCCCEEEEEcCCCEE
Confidence            999999999998877643

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.40  E-value=1.8e-12  Score=98.66  Aligned_cols=94  Identities=14%  Similarity=0.071  Sum_probs=76.6

Q ss_pred             CceeceEEEEEeeCCCCcceeEE-------EeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCc---------
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTF-------KCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSK---------   65 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l-------~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~---------   65 (136)
                      |+.||.|++  ||.+++.....+       .+|..     .|.+++|+|++.+|++++.|+.|++||+.+.         
T Consensus       225 ~s~d~~v~i--wd~~~~~~~~~~~~~~~~~~~h~~-----~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~  297 (393)
T 1erj_A          225 GSLDRAVRV--WDSETGFLVERLDSENESGTGHKD-----SVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP  297 (393)
T ss_dssp             EETTSCEEE--EETTTCCEEEEEC------CCCSS-----CEEEEEECTTSSEEEEEETTSEEEEEEC------------
T ss_pred             EcCCCcEEE--EECCCCcEEEeecccccCCCCCCC-----CEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCC
Confidence            677899988  777777766665       45777     9999999999999999999999999998753         


Q ss_pred             ---ceeeecccCCCceeEEEEccCCCEEEEEEcccccccc
Q 041215           66 ---QRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGA  102 (136)
Q Consensus        66 ---~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd~~~~~  102 (136)
                         .+...+.+|...|.+++|+|++.+|++|+.|......
T Consensus       298 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iw  337 (393)
T 1erj_A          298 NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFW  337 (393)
T ss_dssp             ---CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEE
T ss_pred             CCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEE
Confidence               3456677899999999999999999999888754433

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.40  E-value=7.1e-13  Score=98.23  Aligned_cols=95  Identities=16%  Similarity=0.248  Sum_probs=74.5

Q ss_pred             CCceeceEEEEEeeCCC-CcceeEEEeeeCCCCccceeEEEEeCCC----CEEEEEcCCCcEEEEeCCCcc----eeeec
Q 041215            1 VGSIEGRVGVHHLDDSQ-QSKNFTFKCHRDGSEIYSVNSLNFHPIH----HTFATAGSDGAFNFWDKDSKQ----RLKAM   71 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~-~~~~~~l~~h~~~~~~~~v~~l~~~p~~----~~l~s~~~dg~v~vwd~~~~~----~~~~~   71 (136)
                      +|+.||+|++|.++... ......+.+|..     .|.+++|+|++    .+|++++.|+.|++|++.+..    ....+
T Consensus       184 sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~-----~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~  258 (316)
T 3bg1_A          184 SGGCDNLIKLWKEEEDGQWKEEQKLEAHSD-----WVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLL  258 (316)
T ss_dssp             CCBTTSBCCEEEECTTSCEEEEECCBCCSS-----CEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEE
T ss_pred             EecCCCeEEEEEeCCCCccceeeecccCCC-----ceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhh
Confidence            46789999995543211 135667788988     99999999987    789999999999999987621    12345


Q ss_pred             ccCCCceeEEEEccCCCEEEEEEcccccc
Q 041215           72 SRCGQPIPCSTFNTDGSIFAYSVCYDWSK  100 (136)
Q Consensus        72 ~~h~~~v~~v~~sp~~~~l~s~~~dd~~~  100 (136)
                      ..|...|.+++|+|++.+|++++.|....
T Consensus       259 ~~~~~~v~~v~~sp~g~~las~~~D~~v~  287 (316)
T 3bg1_A          259 HKFNDVVWHVSWSITANILAVSGGDNKVT  287 (316)
T ss_dssp             EECSSCEEEEEECTTTCCEEEEESSSCEE
T ss_pred             hcCCCcEEEEEEcCCCCEEEEEcCCCeEE
Confidence            57889999999999999999998877543

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.40  E-value=3.8e-12  Score=95.61  Aligned_cols=96  Identities=21%  Similarity=0.321  Sum_probs=80.5

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCC-EEEEEcCCCcEEEEeCCC----cceeeecccCCC
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHH-TFATAGSDGAFNFWDKDS----KQRLKAMSRCGQ   76 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~-~l~s~~~dg~v~vwd~~~----~~~~~~~~~h~~   76 (136)
                      |+.||.|.+  ||. .+.....+..|..     .|.+++|+|++. +|++++.|+.|++||+.+    +..+..+ .|..
T Consensus       181 ~~~d~~i~i--~d~-~~~~~~~~~~h~~-----~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~  251 (383)
T 3ei3_B          181 GDSTGRLLL--LGL-DGHEIFKEKLHKA-----KVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEK  251 (383)
T ss_dssp             EETTSEEEE--EET-TSCEEEEEECSSS-----CEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSS
T ss_pred             ECCCCCEEE--EEC-CCCEEEEeccCCC-----cEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCC
Confidence            567888887  666 4678888889999     999999999998 999999999999999987    5556666 7999


Q ss_pred             ceeEEEEcc-CCCEEEEEEcccccccccccC
Q 041215           77 PIPCSTFNT-DGSIFAYSVCYDWSKGAENHN  106 (136)
Q Consensus        77 ~v~~v~~sp-~~~~l~s~~~dd~~~~~~~~~  106 (136)
                      .|.+++|+| ++.+|++++.|..........
T Consensus       252 ~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~  282 (383)
T 3ei3_B          252 PVNAAYFNPTDSTKLLTTDQRNEIRVYSSYD  282 (383)
T ss_dssp             CEEEEEECTTTSCEEEEEESSSEEEEEETTB
T ss_pred             ceEEEEEcCCCCCEEEEEcCCCcEEEEECCC
Confidence            999999999 999999998887655554443

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.40  E-value=2.5e-12  Score=97.86  Aligned_cols=93  Identities=15%  Similarity=0.240  Sum_probs=80.9

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS   81 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v   81 (136)
                      |+.||.|.+  ||..+++....+.+|..     .|.+++|+|++..|++++.|+.|++||+.++.+...+. +...+.++
T Consensus       141 ~~~d~~i~i--wd~~~~~~~~~~~~h~~-----~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~  212 (393)
T 1erj_A          141 GAEDRLIRI--WDIENRKIVMILQGHEQ-----DIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTV  212 (393)
T ss_dssp             EETTSCEEE--EETTTTEEEEEECCCSS-----CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEE
T ss_pred             EcCCCeEEE--EECCCCcEEEEEccCCC-----CEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEE
Confidence            677899988  77788888899999999     99999999999999999999999999999988777664 55789999


Q ss_pred             EEcc-CCCEEEEEEcccccccc
Q 041215           82 TFNT-DGSIFAYSVCYDWSKGA  102 (136)
Q Consensus        82 ~~sp-~~~~l~s~~~dd~~~~~  102 (136)
                      +|+| ++.++++|+.|......
T Consensus       213 ~~~~~~~~~l~~~s~d~~v~iw  234 (393)
T 1erj_A          213 AVSPGDGKYIAAGSLDRAVRVW  234 (393)
T ss_dssp             EECSTTCCEEEEEETTSCEEEE
T ss_pred             EEECCCCCEEEEEcCCCcEEEE
Confidence            9999 89999999887754433

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.40  E-value=1.3e-12  Score=104.89  Aligned_cols=98  Identities=13%  Similarity=0.100  Sum_probs=76.2

Q ss_pred             CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCC-cceeee--cccCCCc
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDS-KQRLKA--MSRCGQP   77 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~-~~~~~~--~~~h~~~   77 (136)
                      +|+.||+|.+|.++......... ..|..     .|.+++|+|++.+|++++.|+.|++|++.+ +..+..  +..|...
T Consensus       465 sgs~D~~v~lwd~~~~~~~~~~~-~~h~~-----~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~  538 (611)
T 1nr0_A          465 VGGQDSKVHVYKLSGASVSEVKT-IVHPA-----EITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAK  538 (611)
T ss_dssp             EEETTSEEEEEEEETTEEEEEEE-EECSS-----CEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSC
T ss_pred             EeCCCCeEEEEEccCCceeeeec-cCCCC-----ceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccc
Confidence            36789999885554322222334 57888     999999999999999999999999999987 554443  3449999


Q ss_pred             eeEEEEccCCCEEEEEEcccccccccc
Q 041215           78 IPCSTFNTDGSIFAYSVCYDWSKGAEN  104 (136)
Q Consensus        78 v~~v~~sp~~~~l~s~~~dd~~~~~~~  104 (136)
                      |.+++|+|++++|++|+.|...+....
T Consensus       539 V~~v~fspdg~~lasgs~D~~v~lW~~  565 (611)
T 1nr0_A          539 VACVSWSPDNVRLATGSLDNSVIVWNM  565 (611)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             eeEEEECCCCCEEEEEECCCcEEEEEC
Confidence            999999999999999988875544433

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.39  E-value=2.1e-12  Score=99.32  Aligned_cols=94  Identities=11%  Similarity=0.119  Sum_probs=83.4

Q ss_pred             CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC   80 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~   80 (136)
                      +|+.||+|.+  ||..+++....+.+|.+     .|.+++|+|++ .|++++.|+.|++||+.++..+..+.+|.+.|.+
T Consensus       137 sgs~dg~i~v--wd~~~~~~~~~~~~h~~-----~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~  208 (464)
T 3v7d_B          137 TGADDKMIRV--YDSINKKFLLQLSGHDG-----GVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRC  208 (464)
T ss_dssp             EEETTSCEEE--EETTTTEEEEEECCCSS-----CEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred             EEcCCCcEEE--EECCCCcEEEEEeCCCc-----CEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEE
Confidence            3678999988  78888899999999999     99999999987 9999999999999999999999999999999999


Q ss_pred             EEEc--cCCCEEEEEEcccccccc
Q 041215           81 STFN--TDGSIFAYSVCYDWSKGA  102 (136)
Q Consensus        81 v~~s--p~~~~l~s~~~dd~~~~~  102 (136)
                      ++|+  +++.++++++.|......
T Consensus       209 l~~~~~~~~~~l~s~s~d~~i~vw  232 (464)
T 3v7d_B          209 LDIVEYKNIKYIVTGSRDNTLHVW  232 (464)
T ss_dssp             EEEEESSSCEEEEEEETTSCEEEE
T ss_pred             EEEecCCCCCEEEEEcCCCcEEEe
Confidence            9998  577899998887754433

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.38  E-value=4.9e-12  Score=92.35  Aligned_cols=94  Identities=13%  Similarity=0.207  Sum_probs=80.2

Q ss_pred             CceeceEEEEEeeCCCCc--ceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCcee
Q 041215            2 GSIEGRVGVHHLDDSQQS--KNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIP   79 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~--~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~   79 (136)
                      |+.||.|.+  ||..+++  ....+..|..     .|.+++|+|++.+|++++.|+.|++||+.++..+..+..|...|.
T Consensus       115 ~~~d~~i~~--~d~~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~  187 (337)
T 1gxr_A          115 GGEASTLSI--WDLAAPTPRIKAELTSSAP-----ACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGAS  187 (337)
T ss_dssp             EESSSEEEE--EECCCC--EEEEEEECSSS-----CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred             EcCCCcEEE--EECCCCCcceeeecccCCC-----ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceE
Confidence            567888888  5555544  6677778888     999999999999999999999999999999998899999999999


Q ss_pred             EEEEccCCCEEEEEEcccccccc
Q 041215           80 CSTFNTDGSIFAYSVCYDWSKGA  102 (136)
Q Consensus        80 ~v~~sp~~~~l~s~~~dd~~~~~  102 (136)
                      +++|+|++.++++++.+.....+
T Consensus       188 ~~~~~~~~~~l~~~~~dg~i~~~  210 (337)
T 1gxr_A          188 CIDISNDGTKLWTGGLDNTVRSW  210 (337)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEE
T ss_pred             EEEECCCCCEEEEEecCCcEEEE
Confidence            99999999999998877654433

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.38  E-value=1.3e-12  Score=98.92  Aligned_cols=95  Identities=15%  Similarity=0.161  Sum_probs=78.8

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccC---C---
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRC---G---   75 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h---~---   75 (136)
                      |+.||.|.+  ||..+++....+.+|..     .|.+++|+|++.+|++++.|+.|++||+.++..+..+..+   .   
T Consensus       157 ~s~d~~i~i--wd~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v  229 (420)
T 3vl1_A          157 SSQDMQLKI--WSVKDGSNPRTLIGHRA-----TVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGV  229 (420)
T ss_dssp             EETTSEEEE--EETTTCCCCEEEECCSS-----CEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCE
T ss_pred             EeCCCeEEE--EeCCCCcCceEEcCCCC-----cEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCc
Confidence            677899888  77788888899999999     9999999999999999999999999999998888777643   2   


Q ss_pred             ------------------CceeEEEEccCCCEEEEEEccccccccc
Q 041215           76 ------------------QPIPCSTFNTDGSIFAYSVCYDWSKGAE  103 (136)
Q Consensus        76 ------------------~~v~~v~~sp~~~~l~s~~~dd~~~~~~  103 (136)
                                        ..+.+++|+|++.++++++.+......+
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d  275 (420)
T 3vl1_A          230 NSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHN  275 (420)
T ss_dssp             EEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEE
T ss_pred             cEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEE
Confidence                              4455556688999999998877544333

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.38  E-value=1.7e-12  Score=97.06  Aligned_cols=96  Identities=19%  Similarity=0.126  Sum_probs=76.1

Q ss_pred             CceeceEEEEEeeCCCCc---ceeEEEe-eeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCC--------------
Q 041215            2 GSIEGRVGVHHLDDSQQS---KNFTFKC-HRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKD--------------   63 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~---~~~~l~~-h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~--------------   63 (136)
                      |+.||.|.+  ||...+.   ....+.. |..     .|.+++|+|++.+|++++.|+.|++||+.              
T Consensus       118 ~~~d~~i~i--wd~~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  190 (377)
T 3dwl_C          118 GSGARVISV--CYFEQENDWWVSKHLKRPLRS-----TILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWG  190 (377)
T ss_dssp             EESSSCEEE--CCC-----CCCCEEECSSCCS-----CEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSC
T ss_pred             EecCCeEEE--EEECCcccceeeeEeecccCC-----CeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccc
Confidence            677899988  6666554   4667776 888     99999999999999999999999999985              


Q ss_pred             ----CcceeeecccCCCceeEEEEccCCCEEEEEEccccccccccc
Q 041215           64 ----SKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAENH  105 (136)
Q Consensus        64 ----~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd~~~~~~~~  105 (136)
                          .+..+..+ .|...|.+++|+|++.+|++++.|.........
T Consensus       191 ~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~  235 (377)
T 3dwl_C          191 SRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPS  235 (377)
T ss_dssp             SCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEEC
T ss_pred             cccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence                34566677 899999999999999999999888755544433

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.37  E-value=1.5e-12  Score=102.56  Aligned_cols=90  Identities=13%  Similarity=0.185  Sum_probs=80.4

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEe-eeCCCCccceeEEEEeC----------CCCEEEEEcCCCcEEEEeCCCc-ceee
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKC-HRDGSEIYSVNSLNFHP----------IHHTFATAGSDGAFNFWDKDSK-QRLK   69 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~-h~~~~~~~~v~~l~~~p----------~~~~l~s~~~dg~v~vwd~~~~-~~~~   69 (136)
                      |+.||.|.+  ||..+++....+.+ |..     .|.+++|+|          ++.+|++++.|+.|++||+.++ ..+.
T Consensus       506 ~~~dg~i~i--w~~~~~~~~~~~~~~h~~-----~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~  578 (615)
T 1pgu_A          506 GDVMGKILL--YDLQSREVKTSRWAFRTS-----KINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIK  578 (615)
T ss_dssp             EETTSCEEE--EETTTTEEEECCSCCCSS-----CEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEE
T ss_pred             cCCCCeEEE--eeCCCCcceeEeecCCCC-----ceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceech
Confidence            567899888  77788888888877 888     999999999          9999999999999999999987 7788


Q ss_pred             ecccCCCceeEEEEccCCCEEEEEEccccc
Q 041215           70 AMSRCGQPIPCSTFNTDGSIFAYSVCYDWS   99 (136)
Q Consensus        70 ~~~~h~~~v~~v~~sp~~~~l~s~~~dd~~   99 (136)
                      .+.+|...|.+++|+|++. |++++.|...
T Consensus       579 ~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v  607 (615)
T 1pgu_A          579 ALNAHKDGVNNLLWETPST-LVSSGADACI  607 (615)
T ss_dssp             ETTSSTTCEEEEEEEETTE-EEEEETTSCE
T ss_pred             hhhcCccceEEEEEcCCCC-eEEecCCceE
Confidence            8999999999999999999 9988877644

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.37  E-value=3.5e-12  Score=96.77  Aligned_cols=94  Identities=12%  Similarity=0.162  Sum_probs=77.1

Q ss_pred             CceeceEEEEEeeCCC--CcceeEEEeeeCCCCccceeEEEEeC-CCCEEEEEcCCCcEEEEeCCCc-------ceeeec
Q 041215            2 GSIEGRVGVHHLDDSQ--QSKNFTFKCHRDGSEIYSVNSLNFHP-IHHTFATAGSDGAFNFWDKDSK-------QRLKAM   71 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~--~~~~~~l~~h~~~~~~~~v~~l~~~p-~~~~l~s~~~dg~v~vwd~~~~-------~~~~~~   71 (136)
                      |+.||.|.+|.++...  ......+.+|..     .|.+++|+| ++.+|++++.|+.|++||+.++       ..+..+
T Consensus        53 ~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~-----~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~  127 (402)
T 2aq5_A           53 ASGGGAFLVLPLGKTGRVDKNVPLVCGHTA-----PVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITL  127 (402)
T ss_dssp             CSSSCCEEEEETTCCEECCTTCCCBCCCSS-----CEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEE
T ss_pred             EcCCCEEEEEECccCCCCCCCCceEecCCC-----CEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEe
Confidence            6779999985543321  134556778999     999999999 8899999999999999999887       557788


Q ss_pred             ccCCCceeEEEEccCC-CEEEEEEcccccc
Q 041215           72 SRCGQPIPCSTFNTDG-SIFAYSVCYDWSK  100 (136)
Q Consensus        72 ~~h~~~v~~v~~sp~~-~~l~s~~~dd~~~  100 (136)
                      .+|...|.+++|+|++ .++++++.|....
T Consensus       128 ~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~  157 (402)
T 2aq5_A          128 EGHTKRVGIVAWHPTAQNVLLSAGCDNVIL  157 (402)
T ss_dssp             ECCSSCEEEEEECSSBTTEEEEEETTSCEE
T ss_pred             cCCCCeEEEEEECcCCCCEEEEEcCCCEEE
Confidence            8999999999999998 6899888776443

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.37  E-value=2.5e-12  Score=96.56  Aligned_cols=91  Identities=14%  Similarity=0.075  Sum_probs=81.2

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcc---------------
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQ---------------   66 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~---------------   66 (136)
                      ++.||.|.+  ||.++++....+..|..     .|.+++|+|++.+|++++.|+.|++||+.++.               
T Consensus       306 ~~~d~~i~i--~d~~~~~~~~~~~~~~~-----~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~  378 (425)
T 1r5m_A          306 CSMDGSVRL--WSLKQNTLLALSIVDGV-----PIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILN  378 (425)
T ss_dssp             EETTSEEEE--EETTTTEEEEEEECTTC-----CEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------
T ss_pred             EeCCCcEEE--EECCCCcEeEecccCCc-----cEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccC
Confidence            567888877  78788888889988888     99999999999999999999999999998877               


Q ss_pred             -----eeeecccCCC--ceeEEEEccCCCEEEEEEccccc
Q 041215           67 -----RLKAMSRCGQ--PIPCSTFNTDGSIFAYSVCYDWS   99 (136)
Q Consensus        67 -----~~~~~~~h~~--~v~~v~~sp~~~~l~s~~~dd~~   99 (136)
                           .+..+..|..  .|.+++|+|++.+|++++.|...
T Consensus       379 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  418 (425)
T 1r5m_A          379 PLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEG  418 (425)
T ss_dssp             CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCC
T ss_pred             cccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceE
Confidence                 7888888866  99999999999999998877644

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.37  E-value=1.3e-12  Score=100.59  Aligned_cols=94  Identities=13%  Similarity=0.070  Sum_probs=71.7

Q ss_pred             CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeC-CCCEEEEEcCCCcEEEEeCCCcceeeecc--cCCCc
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHP-IHHTFATAGSDGAFNFWDKDSKQRLKAMS--RCGQP   77 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p-~~~~l~s~~~dg~v~vwd~~~~~~~~~~~--~h~~~   77 (136)
                      +|+.||+|.+|.++.........+.+|.+     .|.+|+|+| ++.+|++++.|+.|++||+..+.......  .+...
T Consensus       137 sGs~dg~i~lWd~~~~~~~~~~~~~gH~~-----~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~  211 (435)
T 4e54_B          137 VGSKGGDIMLWNFGIKDKPTFIKGIGAGG-----SITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIW  211 (435)
T ss_dssp             EEETTSCEEEECSSCCSCCEEECCCSSSC-----CCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCC
T ss_pred             EEeCCCEEEEEECCCCCceeEEEccCCCC-----CEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCcc
Confidence            47889999995443333444555668888     999999998 57899999999999999998754332222  23457


Q ss_pred             eeEEEEccCCCEEEEEEccccc
Q 041215           78 IPCSTFNTDGSIFAYSVCYDWS   99 (136)
Q Consensus        78 v~~v~~sp~~~~l~s~~~dd~~   99 (136)
                      +.+++|+|++.+|++|+.|...
T Consensus       212 ~~~~~~~~~~~~l~~g~~dg~i  233 (435)
T 4e54_B          212 FCSLDVSASSRMVVTGDNVGNV  233 (435)
T ss_dssp             CCCEEEETTTTEEEEECSSSBE
T ss_pred             EEEEEECCCCCEEEEEeCCCcE
Confidence            8899999999999998877643

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.37  E-value=7.1e-12  Score=92.45  Aligned_cols=97  Identities=16%  Similarity=0.100  Sum_probs=79.8

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCC----CCEEEEEcCCCcEEEEeCCCcceeeecccCCCc
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPI----HHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQP   77 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~----~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~   77 (136)
                      ++.+|.|.+  ||..++.....+..+....+...|.+++|+|+    +.+|++++.|+.|++||+.++..+..+.+|...
T Consensus        40 ~~~~~~v~v--w~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~  117 (366)
T 3k26_A           40 TVGSNRVTL--YECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNA  117 (366)
T ss_dssp             EEETTEEEE--EEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSC
T ss_pred             ECCCCEEEE--EEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCc
Confidence            345677776  66677777777777664333337999999999    569999999999999999999999999999999


Q ss_pred             eeEEEEcc-CCCEEEEEEcccccc
Q 041215           78 IPCSTFNT-DGSIFAYSVCYDWSK  100 (136)
Q Consensus        78 v~~v~~sp-~~~~l~s~~~dd~~~  100 (136)
                      |.+++|+| ++.++++++.|....
T Consensus       118 i~~~~~~~~~~~~l~s~~~dg~i~  141 (366)
T 3k26_A          118 INELKFHPRDPNLLLSVSKDHALR  141 (366)
T ss_dssp             EEEEEECSSCTTEEEEEETTSCEE
T ss_pred             EEEEEECCCCCCEEEEEeCCCeEE
Confidence            99999999 899999988876443

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.37  E-value=2e-12  Score=108.68  Aligned_cols=96  Identities=14%  Similarity=0.144  Sum_probs=75.8

Q ss_pred             CCceeceEEEEEeeCCCCcce--eEEE---------eeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcc---
Q 041215            1 VGSIEGRVGVHHLDDSQQSKN--FTFK---------CHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQ---   66 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~--~~l~---------~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~---   66 (136)
                      +|+.||+|++  ||..++...  ..+.         +|..     .|.+++|+|++++|++++.|+.|++|++.++.   
T Consensus       452 Sgs~DgtVrl--Wd~~~g~~~~~~~~~~~l~~~~~~~h~~-----~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~  524 (902)
T 2oaj_A          452 TGHSNGSVRI--YDASHGDIQDNASFEVNLSRTLNKAKEL-----AVDKISFAAETLELAVSIETGDVVLFKYEVNQFYS  524 (902)
T ss_dssp             EEETTSEEEE--EESSCCTTTTTBCEEEEHHHHTTCSSSC-----CEEEEEEETTTTEEEEEETTSCEEEEEEEECCC--
T ss_pred             EecCCCcEEE--EECCCccccCCceEEeechhhcCCCCCC-----ceeEEEecCCCCeEEEEecCcEEEEEEecCccccC
Confidence            3688999999  555544321  1121         5667     99999999999999999999999999987652   


Q ss_pred             ------------------------------------------eeeecccCCCceeEEEEccCCCEEEEEEcccccccccc
Q 041215           67 ------------------------------------------RLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGAEN  104 (136)
Q Consensus        67 ------------------------------------------~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd~~~~~~~  104 (136)
                                                                ++..+.+|.++|++|+|+|+| +||+|+.|...+..+.
T Consensus       525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~  603 (902)
T 2oaj_A          525 VENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDR  603 (902)
T ss_dssp             -------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEET
T ss_pred             ccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEEC
Confidence                                                      356777899999999999999 9999988886655554

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.36  E-value=5.4e-12  Score=93.61  Aligned_cols=91  Identities=15%  Similarity=0.257  Sum_probs=76.9

Q ss_pred             CceeceEEEEEeeCCCCc--ceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceee--ecccCCCc
Q 041215            2 GSIEGRVGVHHLDDSQQS--KNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLK--AMSRCGQP   77 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~--~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~--~~~~h~~~   77 (136)
                      |+.||.|.+  ||..+++  ....+..|..     .|.+++|+|++.+|++++.|+.|++||+.++....  .+..|...
T Consensus        26 ~~~d~~v~i--~~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~   98 (372)
T 1k8k_C           26 CPNNHEVHI--YEKSGNKWVQVHELKEHNG-----QVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRA   98 (372)
T ss_dssp             ECSSSEEEE--EEEETTEEEEEEEEECCSS-----CEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSC
T ss_pred             EeCCCEEEE--EeCCCCcEEeeeeecCCCC-----cccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCc
Confidence            567899988  4545554  7888889999     99999999999999999999999999998876443  34678899


Q ss_pred             eeEEEEccCCCEEEEEEccccc
Q 041215           78 IPCSTFNTDGSIFAYSVCYDWS   99 (136)
Q Consensus        78 v~~v~~sp~~~~l~s~~~dd~~   99 (136)
                      |.+++|+|++.++++++.+...
T Consensus        99 v~~~~~~~~~~~l~~~~~d~~v  120 (372)
T 1k8k_C           99 ARCVRWAPNEKKFAVGSGSRVI  120 (372)
T ss_dssp             EEEEEECTTSSEEEEEETTSSE
T ss_pred             eeEEEECCCCCEEEEEeCCCEE
Confidence            9999999999999999877643

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.36  E-value=1.2e-12  Score=96.45  Aligned_cols=95  Identities=23%  Similarity=0.345  Sum_probs=74.8

Q ss_pred             CceeceEEEEEeeCCCCcceeEEE-----eeeCCCCccceeEEEEeCCCC-EEEEEcCCCcEEEEeCCCc----------
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFK-----CHRDGSEIYSVNSLNFHPIHH-TFATAGSDGAFNFWDKDSK----------   65 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~-----~h~~~~~~~~v~~l~~~p~~~-~l~s~~~dg~v~vwd~~~~----------   65 (136)
                      |+.||.|.+  ||.+++.....+.     .|..     .|.+++|+|++. +|++++.|+.|++||+.++          
T Consensus       230 ~~~dg~i~i--~d~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g  302 (357)
T 3i2n_A          230 TSLEGKFHV--FDMRTQHPTKGFASVSEKAHKS-----TVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEG  302 (357)
T ss_dssp             EESTTEEEE--EEEEEEETTTEEEEEEEECCSS-----CEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTS
T ss_pred             ECCCCeEEE--EeCcCCCcccceeeeccCCCcC-----CEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCC
Confidence            577899988  5555555444443     7888     999999999997 8999999999999998753          


Q ss_pred             ---------ceeeecccCCCceeEEEEccCCCEEE-EEEccccccccc
Q 041215           66 ---------QRLKAMSRCGQPIPCSTFNTDGSIFA-YSVCYDWSKGAE  103 (136)
Q Consensus        66 ---------~~~~~~~~h~~~v~~v~~sp~~~~l~-s~~~dd~~~~~~  103 (136)
                               ..+..+..|...|.+++|+|++.+++ +++.|.......
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~  350 (357)
T 3i2n_A          303 IEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLI  350 (357)
T ss_dssp             CCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred             CccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEE
Confidence                     35667888999999999999999988 676665543333

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.35  E-value=1.7e-12  Score=99.16  Aligned_cols=94  Identities=13%  Similarity=0.094  Sum_probs=79.9

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEe--eeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecc-cCCCce
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKC--HRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMS-RCGQPI   78 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~--h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~-~h~~~v   78 (136)
                      |+.||.|.+  ||.++++....+..  |..     .|.+++|+|++.+|++++.|+.|++||+.++..+..+. .|..+|
T Consensus       188 ~~~d~~i~i--wd~~~~~~~~~~~~~~h~~-----~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v  260 (437)
T 3gre_A          188 LTNLSRVII--FDIRTLERLQIIENSPRHG-----AVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPI  260 (437)
T ss_dssp             EETTSEEEE--EETTTCCEEEEEECCGGGC-----CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEE
T ss_pred             EeCCCeEEE--EeCCCCeeeEEEccCCCCC-----ceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCce
Confidence            567888887  88888999999988  788     99999999999999999999999999999998888775 778899


Q ss_pred             eEEEEcc----CCCEEEEEEcccccccc
Q 041215           79 PCSTFNT----DGSIFAYSVCYDWSKGA  102 (136)
Q Consensus        79 ~~v~~sp----~~~~l~s~~~dd~~~~~  102 (136)
                      .+++|+|    ++.++++++.|......
T Consensus       261 ~~~~~~~~~s~~~~~l~s~~~dg~i~iw  288 (437)
T 3gre_A          261 THVEVCQFYGKNSVIVVGGSSKTFLTIW  288 (437)
T ss_dssp             EEEEECTTTCTTEEEEEEESTTEEEEEE
T ss_pred             EEEEeccccCCCccEEEEEcCCCcEEEE
Confidence            9996654    57789988777644333

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.35  E-value=1.2e-11  Score=92.29  Aligned_cols=99  Identities=10%  Similarity=-0.003  Sum_probs=75.8

Q ss_pred             CceeceEEEEEe-------eCCCCcceeEEE-eeeCCCCccceeEEEEeC--CCCEEEEEcCCCcEEEEeCCCcceeeec
Q 041215            2 GSIEGRVGVHHL-------DDSQQSKNFTFK-CHRDGSEIYSVNSLNFHP--IHHTFATAGSDGAFNFWDKDSKQRLKAM   71 (136)
Q Consensus         2 gs~dG~v~i~~~-------d~~~~~~~~~l~-~h~~~~~~~~v~~l~~~p--~~~~l~s~~~dg~v~vwd~~~~~~~~~~   71 (136)
                      ||.||++.+|..       |..++..+..+. .|..     +|.+++|+|  ++.+|++++.|+.|++||+.++..+...
T Consensus        91 ~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~  165 (343)
T 3lrv_A           91 RGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSAN-----EIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVH  165 (343)
T ss_dssp             ECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSS-----CEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEE
T ss_pred             ecCCCeEEEEEccCceEEeecCCcceeEEeecCCCC-----CEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Confidence            678999998643       333444444443 4556     899999999  9999999999999999999998886655


Q ss_pred             cc-CCCceeEEEEccCCCEEEEEEccccccccccc
Q 041215           72 SR-CGQPIPCSTFNTDGSIFAYSVCYDWSKGAENH  105 (136)
Q Consensus        72 ~~-h~~~v~~v~~sp~~~~l~s~~~dd~~~~~~~~  105 (136)
                      .. +...|.+++|+|++.++++|+.|......+..
T Consensus       166 ~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~  200 (343)
T 3lrv_A          166 SAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLS  200 (343)
T ss_dssp             CCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESS
T ss_pred             ecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECC
Confidence            33 45689999999999999999887765544433

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.34  E-value=7.5e-12  Score=93.92  Aligned_cols=90  Identities=18%  Similarity=0.251  Sum_probs=81.5

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS   81 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v   81 (136)
                      |+.||.|.+  ||..++.....+..|..     .|.+++|+|++ .+++++.|+.|++||+.++..+..+..|...|.++
T Consensus       265 ~~~d~~i~i--~d~~~~~~~~~~~~~~~-----~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~  336 (425)
T 1r5m_A          265 ASDDGTLRI--WHGGNGNSQNCFYGHSQ-----SIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAG  336 (425)
T ss_dssp             EETTSCEEE--ECSSSBSCSEEECCCSS-----CEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEE
T ss_pred             EcCCCEEEE--EECCCCccceEecCCCc-----cEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEE
Confidence            567888877  78888888888888988     99999999999 99999999999999999999999999999999999


Q ss_pred             EEccCCCEEEEEEccccc
Q 041215           82 TFNTDGSIFAYSVCYDWS   99 (136)
Q Consensus        82 ~~sp~~~~l~s~~~dd~~   99 (136)
                      +|+|++.+|++++.+...
T Consensus       337 ~~s~~~~~l~~~~~dg~i  354 (425)
T 1r5m_A          337 RISQDGQKYAVAFMDGQV  354 (425)
T ss_dssp             EECTTSSEEEEEETTSCE
T ss_pred             EEcCCCCEEEEEECCCeE
Confidence            999999999999877643

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.34  E-value=9e-12  Score=95.78  Aligned_cols=92  Identities=14%  Similarity=0.197  Sum_probs=82.4

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS   81 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v   81 (136)
                      |+.||.|.+  ||.++++....+.+|..     .|.+++|+|++..+++++.|+.|++||+.++..+..+.+|...|.++
T Consensus       286 ~~~d~~i~v--wd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~  358 (464)
T 3v7d_B          286 GSYDNTLIV--WDVAQMKCLYILSGHTD-----RIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLL  358 (464)
T ss_dssp             EETTSCEEE--EETTTTEEEEEECCCSS-----CEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred             EeCCCeEEE--EECCCCcEEEEecCCCC-----CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEE
Confidence            677899888  78888899999999999     99999999999999999999999999999999999999999999999


Q ss_pred             EEccCCCEEEEEEcccccccc
Q 041215           82 TFNTDGSIFAYSVCYDWSKGA  102 (136)
Q Consensus        82 ~~sp~~~~l~s~~~dd~~~~~  102 (136)
                      +|+  +.++++++.|......
T Consensus       359 ~~~--~~~l~s~s~dg~v~vw  377 (464)
T 3v7d_B          359 RLS--DKFLVSAAADGSIRGW  377 (464)
T ss_dssp             EEC--SSEEEEEETTSEEEEE
T ss_pred             EEc--CCEEEEEeCCCcEEEE
Confidence            997  5789988887754433

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.34  E-value=1.9e-12  Score=97.59  Aligned_cols=94  Identities=16%  Similarity=0.244  Sum_probs=80.0

Q ss_pred             Cceec---eEEEEEeeCCCC-cceeEEE-eeeCCCCccceeEEEEeC-CCCEEEEEcCCCcEEEEeCCCcceeeecccCC
Q 041215            2 GSIEG---RVGVHHLDDSQQ-SKNFTFK-CHRDGSEIYSVNSLNFHP-IHHTFATAGSDGAFNFWDKDSKQRLKAMSRCG   75 (136)
Q Consensus         2 gs~dG---~v~i~~~d~~~~-~~~~~l~-~h~~~~~~~~v~~l~~~p-~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~   75 (136)
                      |+.||   .|.+  ||.+++ .....+. +|..     .|.+++|+| ++.+|++++.|+.|++||+.++..+..+..|.
T Consensus       233 ~~~d~~~~~i~~--~d~~~~~~~~~~~~~~~~~-----~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~  305 (416)
T 2pm9_A          233 ATGSDNDPSILI--WDLRNANTPLQTLNQGHQK-----GILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARG  305 (416)
T ss_dssp             EECCSSSCCCCE--EETTSTTSCSBCCCSCCSS-----CEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSS
T ss_pred             EECCCCCceEEE--EeCCCCCCCcEEeecCccC-----ceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCC
Confidence            45566   7777  777764 5667777 8888     999999999 88999999999999999999999999999999


Q ss_pred             CceeEEEEccCC-CEEEEEEcccccccc
Q 041215           76 QPIPCSTFNTDG-SIFAYSVCYDWSKGA  102 (136)
Q Consensus        76 ~~v~~v~~sp~~-~~l~s~~~dd~~~~~  102 (136)
                      ..|.+++|+|++ .++++++.|......
T Consensus       306 ~~v~~~~~s~~~~~~l~s~~~d~~i~iw  333 (416)
T 2pm9_A          306 NWCFKTKFAPEAPDLFACASFDNKIEVQ  333 (416)
T ss_dssp             SCCCCEEECTTCTTEEEECCSSSEEEEE
T ss_pred             CceEEEEECCCCCCEEEEEecCCcEEEE
Confidence            999999999999 799988877654433

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.33  E-value=2.1e-12  Score=103.04  Aligned_cols=96  Identities=15%  Similarity=0.145  Sum_probs=78.0

Q ss_pred             CCceeceEEEEEeeCCCC-cceeEEEeeeCCCCccceeEE--EEeCCC-CEEEEEcCCCcEEEEeCCCcceeeecccCC-
Q 041215            1 VGSIEGRVGVHHLDDSQQ-SKNFTFKCHRDGSEIYSVNSL--NFHPIH-HTFATAGSDGAFNFWDKDSKQRLKAMSRCG-   75 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~-~~~~~l~~h~~~~~~~~v~~l--~~~p~~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~-   75 (136)
                      +||.||+|++  ||.+++ .+...+..|..     .|.++  +|+|++ .+|++++.|++|++||+.++.++..+.+|. 
T Consensus       282 sgs~DgtV~l--WD~~~~~~~~~~~~~H~~-----~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~  354 (524)
T 2j04_B          282 CGFKNGFVAE--FDLTDPEVPSFYDQVHDS-----YILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFR  354 (524)
T ss_dssp             EEETTSEEEE--EETTBCSSCSEEEECSSS-----CEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECS
T ss_pred             EEeCCCEEEE--EECCCCCCceEEeecccc-----cEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccc
Confidence            4788999998  777655 45567889999     99999  568888 899999999999999999887776666664 


Q ss_pred             -CceeEEEEccCCCEEEEEEccccccccc
Q 041215           76 -QPIPCSTFNTDGSIFAYSVCYDWSKGAE  103 (136)
Q Consensus        76 -~~v~~v~~sp~~~~l~s~~~dd~~~~~~  103 (136)
                       ..|.+++|+|++..+++++.|+..+..+
T Consensus       355 ~~~v~~v~fsp~~~~l~s~~~d~tv~lwd  383 (524)
T 2j04_B          355 GSNLVPVVYCPQIYSYIYSDGASSLRAVP  383 (524)
T ss_dssp             CCSCCCEEEETTTTEEEEECSSSEEEEEE
T ss_pred             cCcccceEeCCCcCeEEEeCCCCcEEEEE
Confidence             3589999999999999888777544443

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.33  E-value=2.2e-12  Score=99.34  Aligned_cols=94  Identities=18%  Similarity=0.263  Sum_probs=76.4

Q ss_pred             CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCC-EEEEEcCCCcEEEEeCCCcceee---ecccCCC
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHH-TFATAGSDGAFNFWDKDSKQRLK---AMSRCGQ   76 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~-~l~s~~~dg~v~vwd~~~~~~~~---~~~~h~~   76 (136)
                      +|+.||.|.+  ||.+ ++....+.+|..     .|.+++|+|++. +|++++.|+.|++||+.+.....   ...+|..
T Consensus       226 ~g~~dg~i~~--wd~~-~~~~~~~~~h~~-----~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~  297 (435)
T 4e54_B          226 TGDNVGNVIL--LNMD-GKELWNLRMHKK-----KVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRH  297 (435)
T ss_dssp             EECSSSBEEE--EESS-SCBCCCSBCCSS-----CEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSS
T ss_pred             EEeCCCcEee--eccC-cceeEEEecccc-----eEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccc
Confidence            3678999988  5554 356677888999     999999999984 88899999999999998765433   3357899


Q ss_pred             ceeEEEEccCCCEEEEEEcccccccc
Q 041215           77 PIPCSTFNTDGSIFAYSVCYDWSKGA  102 (136)
Q Consensus        77 ~v~~v~~sp~~~~l~s~~~dd~~~~~  102 (136)
                      .|++++|+|++.+|++++.|......
T Consensus       298 ~v~~~~~spdg~~l~s~~~D~~i~iw  323 (435)
T 4e54_B          298 PVNAACFSPDGARLLTTDQKSEIRVY  323 (435)
T ss_dssp             CEEECCBCTTSSEEEEEESSSCEEEE
T ss_pred             cccceeECCCCCeeEEEcCCCEEEEE
Confidence            99999999999999999888755443

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.33  E-value=4.7e-12  Score=93.93  Aligned_cols=92  Identities=17%  Similarity=0.134  Sum_probs=78.5

Q ss_pred             CceeceEEEEEee----------------CCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCc
Q 041215            2 GSIEGRVGVHHLD----------------DSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSK   65 (136)
Q Consensus         2 gs~dG~v~i~~~d----------------~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~   65 (136)
                      |+.||.+.+|.+.                ...+.....+..|..     .|.+++|+|++.+|++++.|+.|++||+.++
T Consensus       160 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  234 (372)
T 1k8k_C          160 GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG-----WVHGVCFSANGSRVAWVSHDSTVCLADADKK  234 (372)
T ss_dssp             EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS-----CEEEEEECSSSSEEEEEETTTEEEEEEGGGT
T ss_pred             EcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCC-----eEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence            5678999884432                335677778888888     9999999999999999999999999999999


Q ss_pred             ceeeecccCCCceeEEEEccCCCEEEEEEccccc
Q 041215           66 QRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWS   99 (136)
Q Consensus        66 ~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd~~   99 (136)
                      ..+..+..|..+|.+++|+|++.+++++ .++..
T Consensus       235 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i  267 (372)
T 1k8k_C          235 MAVATLASETLPLLAVTFITESSLVAAG-HDCFP  267 (372)
T ss_dssp             TEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSC
T ss_pred             ceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeE
Confidence            9999999999999999999999988877 55433

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.33  E-value=1.3e-11  Score=90.06  Aligned_cols=91  Identities=18%  Similarity=0.224  Sum_probs=79.8

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS   81 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v   81 (136)
                      |+.||.|.+  ||.++++....+..|..     .|.+++|+|++..|++++.|+.|++||+.++..+..+ .+...+.++
T Consensus       159 ~~~dg~v~~--~d~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-~~~~~v~~~  230 (337)
T 1gxr_A          159 CCSDGNIAV--WDLHNQTLVRQFQGHTD-----GASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH-DFTSQIFSL  230 (337)
T ss_dssp             EETTSCEEE--EETTTTEEEEEECCCSS-----CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECSSCEEEE
T ss_pred             EeCCCcEEE--EeCCCCceeeeeecccC-----ceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeee-cCCCceEEE
Confidence            567888877  78888888889988999     9999999999999999999999999999998877766 577899999


Q ss_pred             EEccCCCEEEEEEcccccc
Q 041215           82 TFNTDGSIFAYSVCYDWSK  100 (136)
Q Consensus        82 ~~sp~~~~l~s~~~dd~~~  100 (136)
                      +|+|++.++++++.+....
T Consensus       231 ~~s~~~~~l~~~~~~~~i~  249 (337)
T 1gxr_A          231 GYCPTGEWLAVGMESSNVE  249 (337)
T ss_dssp             EECTTSSEEEEEETTSCEE
T ss_pred             EECCCCCEEEEEcCCCcEE
Confidence            9999999999988776443

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.32  E-value=7.1e-12  Score=105.36  Aligned_cols=77  Identities=13%  Similarity=0.170  Sum_probs=64.4

Q ss_pred             eeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceee-----ecc-cCCCceeEEEEc-----cCC--
Q 041215           21 NFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLK-----AMS-RCGQPIPCSTFN-----TDG--   87 (136)
Q Consensus        21 ~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~-----~~~-~h~~~v~~v~~s-----p~~--   87 (136)
                      +..+.+|.+     .|++++|+|+| +|++|+.|+.|++||+.+...+.     .+. +|.+.|++|+|+     ||+  
T Consensus       568 ~~~l~~h~~-----~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~  641 (902)
T 2oaj_A          568 STAVHANKG-----KTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYS  641 (902)
T ss_dssp             EEEECCCSC-----SEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSE
T ss_pred             eEEEEcCCC-----cEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCc
Confidence            566778888     99999999999 99999999999999998776553     343 889999999999     886  


Q ss_pred             -CEEEEEEccccccccc
Q 041215           88 -SIFAYSVCYDWSKGAE  103 (136)
Q Consensus        88 -~~l~s~~~dd~~~~~~  103 (136)
                       .+|++|+.|...+..+
T Consensus       642 ~~~l~sgs~D~tv~~wd  658 (902)
T 2oaj_A          642 SILMVCGTDMGEVITYK  658 (902)
T ss_dssp             EEEEEEEETTSEEEEEE
T ss_pred             ceEEEEEecCCcEEEEE
Confidence             7999998887554443

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.32  E-value=1.1e-11  Score=105.53  Aligned_cols=90  Identities=17%  Similarity=0.292  Sum_probs=81.8

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS   81 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v   81 (136)
                      |+.||+|.+  ||..++.....+.+|..     .|.+++|+|++.+|++++.|+.|++||+.++..+..+.+|...|.++
T Consensus       633 ~~~d~~i~v--w~~~~~~~~~~~~~h~~-----~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~  705 (1249)
T 3sfz_A          633 CGADKTLQV--FKAETGEKLLDIKAHED-----EVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCC  705 (1249)
T ss_dssp             EETTSCEEE--EETTTCCEEEEECCCSS-----CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred             EeCCCeEEE--EECCCCCEEEEeccCCC-----CEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEE
Confidence            677899988  78888999999999999     99999999999999999999999999999999999999999999999


Q ss_pred             EEcc--CCCEEEEEEcccc
Q 041215           82 TFNT--DGSIFAYSVCYDW   98 (136)
Q Consensus        82 ~~sp--~~~~l~s~~~dd~   98 (136)
                      +|+|  ++.++++|+.|..
T Consensus       706 ~~~~~~~~~~l~sg~~d~~  724 (1249)
T 3sfz_A          706 HFTNKSNHLLLATGSNDFF  724 (1249)
T ss_dssp             EECSSSSCCEEEEEETTSC
T ss_pred             EEecCCCceEEEEEeCCCe
Confidence            9999  4558888877654

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.32  E-value=3.7e-11  Score=88.50  Aligned_cols=88  Identities=18%  Similarity=0.214  Sum_probs=78.4

Q ss_pred             CceeceEEEEEeeCCC-CcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215            2 GSIEGRVGVHHLDDSQ-QSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC   80 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~-~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~   80 (136)
                      |+.||.|.+  ||.++ ......+..|..     .|.+++|+|++.+|++++.|+.|++||+.++..+..+. +...+.+
T Consensus       193 ~~~dg~i~i--~d~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~  264 (369)
T 3zwl_B          193 GHKDGKISK--YDVSNNYEYVDSIDLHEK-----SISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNT  264 (369)
T ss_dssp             EETTSEEEE--EETTTTTEEEEEEECCSS-----CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEE
T ss_pred             EcCCCEEEE--EECCCCcEeEEEEecCCC-----ceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCcee
Confidence            567888877  77777 677888888999     99999999999999999999999999999998887775 7789999


Q ss_pred             EEEccCCCEEEEEEccc
Q 041215           81 STFNTDGSIFAYSVCYD   97 (136)
Q Consensus        81 v~~sp~~~~l~s~~~dd   97 (136)
                      ++|+|++.++++++.++
T Consensus       265 ~~~~~~~~~l~~~~~~~  281 (369)
T 3zwl_B          265 AVITPLKEFIILGGGQE  281 (369)
T ss_dssp             EEECSSSSEEEEEECCC
T ss_pred             EEecCCCceEEEeecCC
Confidence            99999999999988766

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.32  E-value=1.6e-11  Score=94.38  Aligned_cols=94  Identities=20%  Similarity=0.277  Sum_probs=78.3

Q ss_pred             CceeceEEEEEeeCCCC---cceeEEEeeeCCCCccceeEEEEeCCCC-EEEEEcCCCcEEEEeCCC-cceeeecccCCC
Q 041215            2 GSIEGRVGVHHLDDSQQ---SKNFTFKCHRDGSEIYSVNSLNFHPIHH-TFATAGSDGAFNFWDKDS-KQRLKAMSRCGQ   76 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~---~~~~~l~~h~~~~~~~~v~~l~~~p~~~-~l~s~~~dg~v~vwd~~~-~~~~~~~~~h~~   76 (136)
                      |+.||.|.+  ||.++.   +....+..|..     .|.+++|+|++. +|++++.|+.|++||+.+ ...+..+..|..
T Consensus       250 ~~~dg~i~i--~d~~~~~~~~~~~~~~~~~~-----~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~  322 (430)
T 2xyi_A          250 VADDQKLMI--WDTRNNNTSKPSHTVDAHTA-----EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKD  322 (430)
T ss_dssp             EETTSEEEE--EETTCSCSSSCSEEEECCSS-----CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSS
T ss_pred             EeCCCeEEE--EECCCCCCCcceeEeecCCC-----CeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCC
Confidence            567888888  666655   67778888998     999999999995 799999999999999987 566788889999


Q ss_pred             ceeEEEEccCCC-EEEEEEcccccccc
Q 041215           77 PIPCSTFNTDGS-IFAYSVCYDWSKGA  102 (136)
Q Consensus        77 ~v~~v~~sp~~~-~l~s~~~dd~~~~~  102 (136)
                      .|.+++|+|++. +|++++.|+....+
T Consensus       323 ~v~~i~~sp~~~~~l~s~~~d~~i~iw  349 (430)
T 2xyi_A          323 EIFQVQWSPHNETILASSGTDRRLHVW  349 (430)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSCCEEE
T ss_pred             CEEEEEECCCCCCEEEEEeCCCcEEEE
Confidence            999999999985 68888777644433

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.32  E-value=1.8e-11  Score=91.46  Aligned_cols=94  Identities=18%  Similarity=0.238  Sum_probs=78.4

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCC-EEEEEcCCCcEEEEeCCCcc-eeeec--------
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHH-TFATAGSDGAFNFWDKDSKQ-RLKAM--------   71 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~-~l~s~~~dg~v~vwd~~~~~-~~~~~--------   71 (136)
                      |+.||.|.+  ||.+++.....+..|..     .|.+++|+|++. +|++++.|+.|++||+.++. .+..+        
T Consensus       162 ~~~~~~v~~--~d~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  234 (408)
T 4a11_B          162 GTRGPKVQL--CDLKSGSCSHILQGHRQ-----EILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKS  234 (408)
T ss_dssp             EESSSSEEE--EESSSSCCCEEECCCCS-----CEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSC
T ss_pred             EcCCCeEEE--EeCCCcceeeeecCCCC-----cEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccc
Confidence            567888887  77788888899999999     999999999997 69999999999999997654 23333        


Q ss_pred             -------ccCCCceeEEEEccCCCEEEEEEcccccccc
Q 041215           72 -------SRCGQPIPCSTFNTDGSIFAYSVCYDWSKGA  102 (136)
Q Consensus        72 -------~~h~~~v~~v~~sp~~~~l~s~~~dd~~~~~  102 (136)
                             ..|...|.+++|+|++.++++++.|......
T Consensus       235 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw  272 (408)
T 4a11_B          235 QAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLW  272 (408)
T ss_dssp             CCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             eeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEE
Confidence                   5688999999999999999999888754433

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.31  E-value=4.6e-11  Score=89.65  Aligned_cols=98  Identities=17%  Similarity=0.069  Sum_probs=77.7

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS   81 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v   81 (136)
                      |+.||.|.+  ||... .....+..+..  +...|.+++|+|++.+|++++.|+.|++||+ ++..+..+..|...|.++
T Consensus       137 ~~~d~~i~i--wd~~~-~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~  210 (383)
T 3ei3_B          137 SSIRGATTL--RDFSG-SVIQVFAKTDS--WDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHA  210 (383)
T ss_dssp             EETTTEEEE--EETTS-CEEEEEECCCC--SSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEE
T ss_pred             EeCCCEEEE--EECCC-CceEEEeccCC--CCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEE
Confidence            577899988  56554 44555554431  1118999999999999999999999999999 567788899999999999


Q ss_pred             EEccCCC-EEEEEEccccccccccc
Q 041215           82 TFNTDGS-IFAYSVCYDWSKGAENH  105 (136)
Q Consensus        82 ~~sp~~~-~l~s~~~dd~~~~~~~~  105 (136)
                      +|+|++. ++++++.|......+..
T Consensus       211 ~~~~~~~~~l~s~~~d~~i~iwd~~  235 (383)
T 3ei3_B          211 EFNPRCDWLMATSSVDATVKLWDLR  235 (383)
T ss_dssp             EECSSCTTEEEEEETTSEEEEEEGG
T ss_pred             EECCCCCCEEEEEeCCCEEEEEeCC
Confidence            9999999 89988887765554444

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.31  E-value=5.5e-12  Score=98.07  Aligned_cols=91  Identities=11%  Similarity=0.087  Sum_probs=73.9

Q ss_pred             CceeceEEEEEeeCCCC--------cc---eeEEEeeeCCCCccceeEEEEeCC-CCEEEEEcCCCcEEEEeCCCcceee
Q 041215            2 GSIEGRVGVHHLDDSQQ--------SK---NFTFKCHRDGSEIYSVNSLNFHPI-HHTFATAGSDGAFNFWDKDSKQRLK   69 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~--------~~---~~~l~~h~~~~~~~~v~~l~~~p~-~~~l~s~~~dg~v~vwd~~~~~~~~   69 (136)
                      |+.||.|.+|  |..+.        +.   ...+.+|..     .|.+++|+|+ +.+|++++.|+.|++||+.++..+.
T Consensus       114 gs~d~~v~iw--d~~~~~~~~~~~~~~~~~~~~~~~h~~-----~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~  186 (434)
T 2oit_A          114 SEYGSIIAFF--DVRTFSNEAKQQKRPFAYHKLLKDAGG-----MVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVC  186 (434)
T ss_dssp             TTTEEEEEEE--EHHHHHCTTCSSCCCSEEEECCCSGGG-----SEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEE
T ss_pred             cCCCceEEEE--EccccccCCcCCcceeeeeeccCCCCC-----ceEEEEECCCCCCEEEEEECCCeEEEEEcCCCccee
Confidence            5779999884  44322        22   344455777     9999999998 6899999999999999999887666


Q ss_pred             ecccCCCceeEEEEccCCCEEEEEEccccc
Q 041215           70 AMSRCGQPIPCSTFNTDGSIFAYSVCYDWS   99 (136)
Q Consensus        70 ~~~~h~~~v~~v~~sp~~~~l~s~~~dd~~   99 (136)
                      ...+|...|.+++|+|++.+|++|+.|+..
T Consensus       187 ~~~~~~~~v~~v~wspdg~~lasgs~dg~v  216 (434)
T 2oit_A          187 ATLPSTVAVTSVCWSPKGKQLAVGKQNGTV  216 (434)
T ss_dssp             EEECGGGCEEEEEECTTSSCEEEEETTSCE
T ss_pred             eccCCCCceeEEEEcCCCCEEEEEcCCCcE
Confidence            666788999999999999999999887644

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.31  E-value=2.6e-11  Score=92.78  Aligned_cols=92  Identities=12%  Similarity=0.198  Sum_probs=77.0

Q ss_pred             ceeceEEEEEeeCCCCcceeEEE--eeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215            3 SIEGRVGVHHLDDSQQSKNFTFK--CHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC   80 (136)
Q Consensus         3 s~dG~v~i~~~d~~~~~~~~~l~--~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~   80 (136)
                      +.|++|.+  ||..+++....+.  .|..     .|++|+|+|+|.+|++|+.|+.|++||+.++..+..+.+|...+.+
T Consensus       122 gld~tV~l--Wd~~tg~~~~~~~~~~~~~-----~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~  194 (420)
T 4gga_A          122 ALDNSVYL--WSASSGDILQLLQMEQPGE-----YISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGS  194 (420)
T ss_dssp             EETTEEEE--EETTTCCEEEEEECCSTTC-----CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred             EeCCEEEE--EECCCCCEEEEEEecCCCC-----cEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEE
Confidence            35788877  7888888777665  4556     8999999999999999999999999999999999999999999998


Q ss_pred             EEEccCCCEEEEEEccccccccc
Q 041215           81 STFNTDGSIFAYSVCYDWSKGAE  103 (136)
Q Consensus        81 v~~sp~~~~l~s~~~dd~~~~~~  103 (136)
                      +++  ++.++++|+.|.......
T Consensus       195 ~s~--~~~~l~sgs~d~~i~~~d  215 (420)
T 4gga_A          195 LSW--NSYILSSGSRSGHIHHHD  215 (420)
T ss_dssp             EEE--ETTEEEEEETTSEEEEEE
T ss_pred             Eee--CCCEEEEEeCCCceeEee
Confidence            887  567899888776554443

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.31  E-value=1.8e-11  Score=100.79  Aligned_cols=98  Identities=10%  Similarity=0.178  Sum_probs=84.2

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCC--CCEEEEEcCCCcEEEEeCCCcc--eeeecccCCCc
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPI--HHTFATAGSDGAFNFWDKDSKQ--RLKAMSRCGQP   77 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~--~~~l~s~~~dg~v~vwd~~~~~--~~~~~~~h~~~   77 (136)
                      |+.||.|.+|.++..+......+.+|..     +|.+++|+|+  +.+|++++.||.|++||+.++.  .+..+..|...
T Consensus        27 g~~dg~I~vwd~~~~~~~~~~~l~~h~~-----~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~  101 (753)
T 3jro_A           27 CSSDKTIKIFEVEGETHKLIDTLTGHEG-----PVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSAS  101 (753)
T ss_dssp             EETTTEEEEEEEETTEEEEEEEECCCSS-----CEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSC
T ss_pred             EECCCcEEEEecCCCCCccceeccCCcC-----ceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCC
Confidence            6789999996665556677888889999     9999999988  8999999999999999999876  66778889999


Q ss_pred             eeEEEEccC--CCEEEEEEcccccccccc
Q 041215           78 IPCSTFNTD--GSIFAYSVCYDWSKGAEN  104 (136)
Q Consensus        78 v~~v~~sp~--~~~l~s~~~dd~~~~~~~  104 (136)
                      |.+++|+|+  +.++++|+.|........
T Consensus       102 V~~v~~sp~~~~~~l~sgs~dg~I~vwdl  130 (753)
T 3jro_A          102 VNSVQWAPHEYGPLLLVASSDGKVSVVEF  130 (753)
T ss_dssp             EEEEEECCGGGCSEEEEEETTSEEEEEEC
T ss_pred             eEEEEECCCCCCCEEEEEeCCCcEEEEEe
Confidence            999999999  999999988876554443

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.30  E-value=3.8e-11  Score=88.93  Aligned_cols=96  Identities=18%  Similarity=0.226  Sum_probs=76.9

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeC-------------CCCEEEEEcCCCcEEEEeCCCcc--
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHP-------------IHHTFATAGSDGAFNFWDKDSKQ--   66 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p-------------~~~~l~s~~~dg~v~vwd~~~~~--   66 (136)
                      |+.||.|.+|.++.........+..|..     .|.+++|+|             ++.+|++++.|+.|++||+.++.  
T Consensus       121 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  195 (379)
T 3jrp_A          121 ASSDGKVSVVEFKENGTTSPIIIDAHAI-----GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT  195 (379)
T ss_dssp             EETTSEEEEEECCTTSCCCEEEEECCTT-----CEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTE
T ss_pred             ecCCCcEEEEecCCCCceeeEEecCCCC-----ceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcc
Confidence            5778999884443333355566778888     999999999             68999999999999999987653  


Q ss_pred             --eeeecccCCCceeEEEEccC---CCEEEEEEcccccccc
Q 041215           67 --RLKAMSRCGQPIPCSTFNTD---GSIFAYSVCYDWSKGA  102 (136)
Q Consensus        67 --~~~~~~~h~~~v~~v~~sp~---~~~l~s~~~dd~~~~~  102 (136)
                        ....+.+|...|.+++|+|+   +.++++++.|......
T Consensus       196 ~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iw  236 (379)
T 3jrp_A          196 YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW  236 (379)
T ss_dssp             EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEE
T ss_pred             eeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEE
Confidence              44677789999999999999   8899998887754433

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.30  E-value=2e-11  Score=92.75  Aligned_cols=86  Identities=19%  Similarity=0.218  Sum_probs=74.9

Q ss_pred             CceeceEEEEEeeCC-CCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215            2 GSIEGRVGVHHLDDS-QQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC   80 (136)
Q Consensus         2 gs~dG~v~i~~~d~~-~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~   80 (136)
                      |+.||.|.+  ||.+ .......+..|..     .|.+++|+|++.+|++++.|+.|++||+.++..+..+..|...|.+
T Consensus       192 ~~~dg~i~i--~d~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~  264 (401)
T 4aez_A          192 GSRSGAIHH--HDVRIANHQIGTLQGHSS-----EVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKA  264 (401)
T ss_dssp             EETTSEEEE--EETTSSSCEEEEEECCSS-----CEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCE
T ss_pred             EcCCCCEEE--EecccCcceeeEEcCCCC-----CeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEE
Confidence            677888887  6766 4566788888999     9999999999999999999999999999999888899899999999


Q ss_pred             EEEccCCC-EEEEEE
Q 041215           81 STFNTDGS-IFAYSV   94 (136)
Q Consensus        81 v~~sp~~~-~l~s~~   94 (136)
                      ++|+|++. ++++++
T Consensus       265 ~~~~p~~~~ll~~~~  279 (401)
T 4aez_A          265 VAWCPWQSNLLATGG  279 (401)
T ss_dssp             EEECTTSTTEEEEEC
T ss_pred             EEECCCCCCEEEEec
Confidence            99999775 555553

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.30  E-value=1.3e-11  Score=100.20  Aligned_cols=87  Identities=20%  Similarity=0.243  Sum_probs=77.1

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS   81 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v   81 (136)
                      |+.||+|++  ||.++.+....+.+|.+     .|.+++|+|++.+|++++.|+.|++||+.++..+..+.. ...|.++
T Consensus       537 ~s~d~~v~v--wd~~~~~~~~~~~~h~~-----~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~  608 (694)
T 3dm0_A          537 ASWDKTVKV--WNLSNCKLRSTLAGHTG-----YVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA-NSVIHAL  608 (694)
T ss_dssp             EETTSCEEE--EETTTCCEEEEECCCSS-----CEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC-SSCEEEE
T ss_pred             EeCCCeEEE--EECCCCcEEEEEcCCCC-----CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC-CCcEEEE
Confidence            677999988  77788888899999999     999999999999999999999999999999988877754 4789999


Q ss_pred             EEccCCCEEEEEEcc
Q 041215           82 TFNTDGSIFAYSVCY   96 (136)
Q Consensus        82 ~~sp~~~~l~s~~~d   96 (136)
                      +|+|++.+++++...
T Consensus       609 ~~sp~~~~l~~~~~~  623 (694)
T 3dm0_A          609 CFSPNRYWLCAATEH  623 (694)
T ss_dssp             EECSSSSEEEEEETT
T ss_pred             EEcCCCcEEEEEcCC
Confidence            999999988876543

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.30  E-value=9.4e-12  Score=97.94  Aligned_cols=96  Identities=11%  Similarity=0.011  Sum_probs=80.0

Q ss_pred             Cce-eceEEEEEeeCCCCcce-eEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeeccc-CCCce
Q 041215            2 GSI-EGRVGVHHLDDSQQSKN-FTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSR-CGQPI   78 (136)
Q Consensus         2 gs~-dG~v~i~~~d~~~~~~~-~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~-h~~~v   78 (136)
                      |+. ||.+.+  ||..++... ..+..|..     .|.+++|+|++.+|++++.|+.|++||+.++..+..+.+ |...|
T Consensus       462 ~~~~d~~i~~--~~~~~~~~~~~~~~~~~~-----~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v  534 (615)
T 1pgu_A          462 GLEEGNTIQV--FKLSDLEVSFDLKTPLRA-----KPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKI  534 (615)
T ss_dssp             EETTTSCEEE--EETTEEEEEEECSSCCSS-----CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCE
T ss_pred             eecCCCeEEE--EECCCccccccccCCccC-----ceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCce
Confidence            344 788877  666655443 55566777     999999999999999999999999999999999988888 99999


Q ss_pred             eEEEEcc----------CCCEEEEEEcccccccccc
Q 041215           79 PCSTFNT----------DGSIFAYSVCYDWSKGAEN  104 (136)
Q Consensus        79 ~~v~~sp----------~~~~l~s~~~dd~~~~~~~  104 (136)
                      .+++|+|          ++.+|++++.|........
T Consensus       535 ~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~  570 (615)
T 1pgu_A          535 NAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSV  570 (615)
T ss_dssp             EEEEECCCC------CCSCCEEEEEETTSCEEEEES
T ss_pred             eEEEEcCccccccccccCCCEEEEEcCCCcEEEEEC
Confidence            9999999          9999999988875544433

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.29  E-value=2.2e-11  Score=98.20  Aligned_cols=93  Identities=13%  Similarity=0.223  Sum_probs=70.4

Q ss_pred             CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcce-------eeec--
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQR-------LKAM--   71 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~-------~~~~--   71 (136)
                      ++|.||++.+  ||...  .+..+. |...-....|.+++|+|+|++|++++.||.|++||+.++..       +.++  
T Consensus       102 s~s~dg~V~i--wd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~  176 (588)
T 2j04_A          102 VLSNNGNVSV--FKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRL  176 (588)
T ss_dssp             EEETTSCEEE--EETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEEC
T ss_pred             EEeCCCcEEE--EeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeec
Confidence            3678999988  66443  455555 55411122499999999999999999999999999998752       4565  


Q ss_pred             --ccCCCceeEEEEccCCCEEEEEEcccccc
Q 041215           72 --SRCGQPIPCSTFNTDGSIFAYSVCYDWSK  100 (136)
Q Consensus        72 --~~h~~~v~~v~~sp~~~~l~s~~~dd~~~  100 (136)
                        .+|.++|.+++|+|++  +++++.|...+
T Consensus       177 ~~~gh~~~V~sVawSPdg--Laass~D~tVr  205 (588)
T 2j04_A          177 SDAGSKDWVTHIVWYEDV--LVAALSNNSVF  205 (588)
T ss_dssp             SCTTCCCCEEEEEEETTE--EEEEETTCCEE
T ss_pred             ccccccccEEEEEEcCCc--EEEEeCCCeEE
Confidence              5678899999999999  66666766443

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.28  E-value=2.3e-11  Score=93.55  Aligned_cols=91  Identities=20%  Similarity=0.325  Sum_probs=77.0

Q ss_pred             CCceeceEEEEEeeCCC-CcceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCC--------------
Q 041215            1 VGSIEGRVGVHHLDDSQ-QSKNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDS--------------   64 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~-~~~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~--------------   64 (136)
                      +|+.||.|.+  ||.+. ......+..|..     .|.+++|+|++ .+|++++.|+.|++||+..              
T Consensus       295 tg~~dg~v~v--wd~~~~~~~~~~~~~h~~-----~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~  367 (430)
T 2xyi_A          295 TGSADKTVAL--WDLRNLKLKLHSFESHKD-----EIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP  367 (430)
T ss_dssp             EEETTSEEEE--EETTCTTSCSEEEECCSS-----CEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCC
T ss_pred             EEeCCCeEEE--EeCCCCCCCeEEeecCCC-----CEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCC
Confidence            3677899888  77665 567888889999     99999999999 5799999999999999876              


Q ss_pred             cceeeecccCCCceeEEEEccCCC-EEEEEEcccc
Q 041215           65 KQRLKAMSRCGQPIPCSTFNTDGS-IFAYSVCYDW   98 (136)
Q Consensus        65 ~~~~~~~~~h~~~v~~v~~sp~~~-~l~s~~~dd~   98 (136)
                      ...+..+.+|...|.+++|+|++. ++++++.|+.
T Consensus       368 ~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~  402 (430)
T 2xyi_A          368 PELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNI  402 (430)
T ss_dssp             TTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSE
T ss_pred             cceEEEcCCCCCCceEEEECCCCCCEEEEEECCCC
Confidence            256677888999999999999999 7887776653

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.28  E-value=3.9e-11  Score=87.17  Aligned_cols=88  Identities=13%  Similarity=0.208  Sum_probs=73.8

Q ss_pred             ceeceEEEEEeeCCCCcceeEEEe--eeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215            3 SIEGRVGVHHLDDSQQSKNFTFKC--HRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC   80 (136)
Q Consensus         3 s~dG~v~i~~~d~~~~~~~~~l~~--h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~   80 (136)
                      +.|++|+|  ||..+++....+..  |..     .|.+++|+|++++|++|+.|+.|++||+.+++.+..+.+|...+.+
T Consensus        42 g~D~tV~i--Wd~~tg~~~~~~~~~~~~~-----~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~  114 (318)
T 4ggc_A           42 ALDNSVYL--WSASSGDILQLLQMEQPGE-----YISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGS  114 (318)
T ss_dssp             EETTEEEE--EETTTCCEEEEEECCSTTC-----CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEE
T ss_pred             EeCCEEEE--EECCCCCEEEEEEecCCCC-----eEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEE
Confidence            45888887  78888888877764  555     8999999999999999999999999999999999999999887776


Q ss_pred             EEEccCCCEEEEEEccccc
Q 041215           81 STFNTDGSIFAYSVCYDWS   99 (136)
Q Consensus        81 v~~sp~~~~l~s~~~dd~~   99 (136)
                      +.+  ++.++++++.+...
T Consensus       115 ~~~--~~~~l~s~~~~~~~  131 (318)
T 4ggc_A          115 LSW--NSYILSSGSRSGHI  131 (318)
T ss_dssp             EEE--ETTEEEEEETTSEE
T ss_pred             eec--CCCEEEEEecCCce
Confidence            554  66788888776643

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.27  E-value=2.3e-11  Score=99.19  Aligned_cols=91  Identities=22%  Similarity=0.341  Sum_probs=80.9

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCc-ceeeecccCCCceeE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSK-QRLKAMSRCGQPIPC   80 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~-~~~~~~~~h~~~v~~   80 (136)
                      |+.||.|.+  ||..++.....+..|..     .|.+++|+|++..|++++.|+.|++||+.++ .....+.+|...|.+
T Consensus        73 ~~~dg~i~v--w~~~~~~~~~~~~~~~~-----~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~  145 (814)
T 3mkq_A           73 GSDDFRIRV--FNYNTGEKVVDFEAHPD-----YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMC  145 (814)
T ss_dssp             EETTSEEEE--EETTTCCEEEEEECCSS-----CEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEE
T ss_pred             EeCCCeEEE--EECCCCcEEEEEecCCC-----CEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEE
Confidence            567888888  77788889999999999     9999999999999999999999999999876 666788889999999


Q ss_pred             EEEcc-CCCEEEEEEccccc
Q 041215           81 STFNT-DGSIFAYSVCYDWS   99 (136)
Q Consensus        81 v~~sp-~~~~l~s~~~dd~~   99 (136)
                      ++|+| ++..+++++.|...
T Consensus       146 ~~~~p~~~~~l~~~~~dg~v  165 (814)
T 3mkq_A          146 VAFNPKDPSTFASGCLDRTV  165 (814)
T ss_dssp             EEEETTEEEEEEEEETTSEE
T ss_pred             EEEEcCCCCEEEEEeCCCeE
Confidence            99999 88899998877644

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.27  E-value=3.9e-11  Score=102.23  Aligned_cols=94  Identities=20%  Similarity=0.260  Sum_probs=84.2

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCC--CCEEEEEcCCCcEEEEeCCCcceeeecccCCCcee
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPI--HHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIP   79 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~   79 (136)
                      |+.||.|.+  ||..+++....+.+|..     .|.+++|+|+  +.++++++.|+.|++||+.++..+..+.+|.+.|.
T Consensus       675 ~~~d~~v~v--wd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~  747 (1249)
T 3sfz_A          675 CSADKKVKI--WDSATGKLVHTYDEHSE-----QVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVN  747 (1249)
T ss_dssp             EETTSEEEE--EETTTCCEEEEEECCSS-----CEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEE
T ss_pred             EeCCCeEEE--EECCCCceEEEEcCCCC-----cEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEE
Confidence            567888888  78888999999999999     9999999995  46899999999999999999999999999999999


Q ss_pred             EEEEccCCCEEEEEEcccccccc
Q 041215           80 CSTFNTDGSIFAYSVCYDWSKGA  102 (136)
Q Consensus        80 ~v~~sp~~~~l~s~~~dd~~~~~  102 (136)
                      +++|+|++.++++++.|......
T Consensus       748 ~~~~sp~~~~l~s~s~dg~v~vw  770 (1249)
T 3sfz_A          748 HCRFSPDDELLASCSADGTLRLW  770 (1249)
T ss_dssp             EEEECSSTTEEEEEESSSEEEEE
T ss_pred             EEEEecCCCEEEEEECCCeEEEE
Confidence            99999999999999888754433

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.26  E-value=3.9e-11  Score=89.68  Aligned_cols=94  Identities=18%  Similarity=0.253  Sum_probs=73.7

Q ss_pred             CceeceEEEEEeeCCCCc-ceeEE---------------EeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCc
Q 041215            2 GSIEGRVGVHHLDDSQQS-KNFTF---------------KCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSK   65 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~-~~~~l---------------~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~   65 (136)
                      |+.||.|.+  ||.+.+. ....+               ..|..     .|.+++|+|++.+|++++.|+.|++||+.++
T Consensus       205 ~~~dg~i~i--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~  277 (408)
T 4a11_B          205 ASADSRVKL--WDVRRASGCLITLDQHNGKKSQAVESANTAHNG-----KVNGLCFTSDGLHLLTVGTDNRMRLWNSSNG  277 (408)
T ss_dssp             EETTSCEEE--EETTCSSCCSEECCTTTTCSCCCTTTSSCSCSS-----CEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             EcCCCcEEE--EECCCCCcccccccccccccceeeccccccccC-----ceeEEEEcCCCCEEEEecCCCeEEEEECCCC
Confidence            677889888  6665443 33333               45666     9999999999999999999999999998754


Q ss_pred             c-----------------------------------------------eeeecccCCCceeEEEEccCCCEEEEEEcccc
Q 041215           66 Q-----------------------------------------------RLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDW   98 (136)
Q Consensus        66 ~-----------------------------------------------~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd~   98 (136)
                      .                                               .+..+.+|...|.+++|+|++.+|++++.|..
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~  357 (408)
T 4a11_B          278 ENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCN  357 (408)
T ss_dssp             CBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSC
T ss_pred             ccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCe
Confidence            3                                               34455678899999999999999999988875


Q ss_pred             cccc
Q 041215           99 SKGA  102 (136)
Q Consensus        99 ~~~~  102 (136)
                      ....
T Consensus       358 i~iw  361 (408)
T 4a11_B          358 ILAW  361 (408)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4433

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.26  E-value=2.5e-11  Score=93.63  Aligned_cols=94  Identities=9%  Similarity=-0.035  Sum_probs=77.0

Q ss_pred             CceeceEEEEEeeCCCCcc----eeEEEeeeCCCCccceeEEEEeCC---CCEEEEEcCCCcEEEEeCCCcceeee-ccc
Q 041215            2 GSIEGRVGVHHLDDSQQSK----NFTFKCHRDGSEIYSVNSLNFHPI---HHTFATAGSDGAFNFWDKDSKQRLKA-MSR   73 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~----~~~l~~h~~~~~~~~v~~l~~~p~---~~~l~s~~~dg~v~vwd~~~~~~~~~-~~~   73 (136)
                      |+.||.+.+  |+..++..    ...+.+|..     .|.+++|+|+   +.+|++++.|+.|++||+.++..+.. +.+
T Consensus       167 ~~~~g~v~~--~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~  239 (450)
T 2vdu_B          167 ADKFGDVYS--IDINSIPEEKFTQEPILGHVS-----MLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFG  239 (450)
T ss_dssp             EETTSEEEE--EETTSCCCSSCCCCCSEECSS-----CEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCC
T ss_pred             EeCCCcEEE--EecCCcccccccceeeecccC-----ceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecC
Confidence            455677755  66655443    337788999     9999999999   89999999999999999999888777 568


Q ss_pred             CCCceeEEEEccCCCEEEEEEccccccccc
Q 041215           74 CGQPIPCSTFNTDGSIFAYSVCYDWSKGAE  103 (136)
Q Consensus        74 h~~~v~~v~~sp~~~~l~s~~~dd~~~~~~  103 (136)
                      |...|.+++|+ ++.+|++++.|.......
T Consensus       240 h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd  268 (450)
T 2vdu_B          240 HKHFVSSICCG-KDYLLLSAGGDDKIFAWD  268 (450)
T ss_dssp             CSSCEEEEEEC-STTEEEEEESSSEEEEEE
T ss_pred             CCCceEEEEEC-CCCEEEEEeCCCeEEEEE
Confidence            99999999999 999999998876544433

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.25  E-value=3.6e-11  Score=90.55  Aligned_cols=94  Identities=13%  Similarity=0.160  Sum_probs=79.5

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEee------eCCCCccceeEEEEeCCC-CEEEEEcCCC---cEEEEeCCCc-ceeee
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCH------RDGSEIYSVNSLNFHPIH-HTFATAGSDG---AFNFWDKDSK-QRLKA   70 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h------~~~~~~~~v~~l~~~p~~-~~l~s~~~dg---~v~vwd~~~~-~~~~~   70 (136)
                      |+.||.|.+  ||.++++....+..+      ..     .|.+++|+|++ .+|++++.|+   .|++||+.++ ..+..
T Consensus       184 ~~~dg~v~i--wd~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~  256 (416)
T 2pm9_A          184 AGSSNFASI--WDLKAKKEVIHLSYTSPNSGIKQ-----QLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQT  256 (416)
T ss_dssp             ESSSSCEEE--EETTTTEEEEEECCCCCSSCCCC-----CEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBC
T ss_pred             EcCCCCEEE--EECCCCCcceEEeccccccccCC-----ceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEE
Confidence            577899988  777888888887766      56     89999999998 6999999998   9999999986 56677


Q ss_pred             cc-cCCCceeEEEEcc-CCCEEEEEEcccccccc
Q 041215           71 MS-RCGQPIPCSTFNT-DGSIFAYSVCYDWSKGA  102 (136)
Q Consensus        71 ~~-~h~~~v~~v~~sp-~~~~l~s~~~dd~~~~~  102 (136)
                      +. +|...|.+++|+| ++.+|++++.|......
T Consensus       257 ~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~w  290 (416)
T 2pm9_A          257 LNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLW  290 (416)
T ss_dssp             CCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEE
T ss_pred             eecCccCceeEEEeCCCCCCeEEEEeCCCCEEEe
Confidence            77 8999999999999 89999999887754433

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.24  E-value=1.1e-10  Score=89.56  Aligned_cols=93  Identities=15%  Similarity=0.192  Sum_probs=80.7

Q ss_pred             CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC   80 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~   80 (136)
                      +|+.||.|.+  ||..+++....+.+|..     .|.+++|  ++.+|++++.||.|++||+.++..+..+..|...|.+
T Consensus       148 ~g~~dg~i~i--wd~~~~~~~~~~~~h~~-----~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~  218 (435)
T 1p22_A          148 SGLRDNTIKI--WDKNTLECKRILTGHTG-----SVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLH  218 (435)
T ss_dssp             EEESSSCEEE--EESSSCCEEEEECCCSS-----CEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEE
T ss_pred             EEeCCCeEEE--EeCCCCeEEEEEcCCCC-----cEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEE
Confidence            3678999988  77788899999999999     9999998  6789999999999999999999999999999999999


Q ss_pred             EEEccCCCEEEEEEcccccccccc
Q 041215           81 STFNTDGSIFAYSVCYDWSKGAEN  104 (136)
Q Consensus        81 v~~sp~~~~l~s~~~dd~~~~~~~  104 (136)
                      ++|++  .++++|+.|........
T Consensus       219 l~~~~--~~l~s~s~dg~i~vwd~  240 (435)
T 1p22_A          219 LRFNN--GMMVTCSKDRSIAVWDM  240 (435)
T ss_dssp             EECCT--TEEEEEETTSCEEEEEC
T ss_pred             EEEcC--CEEEEeeCCCcEEEEeC
Confidence            99974  58898888776544443

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.24  E-value=4.9e-11  Score=92.00  Aligned_cols=95  Identities=15%  Similarity=0.036  Sum_probs=77.8

Q ss_pred             CceeceEEEEEeeCCCCcceeEEE--eeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceee----ecccCC
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFK--CHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLK----AMSRCG   75 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~--~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~----~~~~h~   75 (136)
                      |+.||.|.+|.++..++.....+.  .|..     .|.+++|+|++.+|++++.++.|++|++.++....    .+.+|.
T Consensus       121 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~-----~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~  195 (450)
T 2vdu_B          121 ADSDKSLLVFDVDKTSKNVLKLRKRFCFSK-----RPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHV  195 (450)
T ss_dssp             EGGGTEEEEEEECSSSSSCEEEEEEEECSS-----CEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECS
T ss_pred             ECCCCeEEEEECcCCCCceeeeeecccCCC-----CceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeeccc
Confidence            577899998555322677777776  4457     89999999999999999999999999998776443    778899


Q ss_pred             CceeEEEEccC---CCEEEEEEccccccc
Q 041215           76 QPIPCSTFNTD---GSIFAYSVCYDWSKG  101 (136)
Q Consensus        76 ~~v~~v~~sp~---~~~l~s~~~dd~~~~  101 (136)
                      ..|++++|+|+   +.+|++|+.|.....
T Consensus       196 ~~v~~~~~sp~~~~~~~l~s~~~d~~i~v  224 (450)
T 2vdu_B          196 SMLTDVHLIKDSDGHQFIITSDRDEHIKI  224 (450)
T ss_dssp             SCEEEEEEEECTTSCEEEEEEETTSCEEE
T ss_pred             CceEEEEEcCCCCCCcEEEEEcCCCcEEE
Confidence            99999999999   989999988764433

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.24  E-value=4.2e-11  Score=88.15  Aligned_cols=92  Identities=9%  Similarity=0.100  Sum_probs=73.9

Q ss_pred             eceEEEEEeeCCCCcceeEE-EeeeCCCCccceeEEEEeCC---CCEEEEEcCCCcEEEEeCCCcc-eeeecccCCCcee
Q 041215            5 EGRVGVHHLDDSQQSKNFTF-KCHRDGSEIYSVNSLNFHPI---HHTFATAGSDGAFNFWDKDSKQ-RLKAMSRCGQPIP   79 (136)
Q Consensus         5 dG~v~i~~~d~~~~~~~~~l-~~h~~~~~~~~v~~l~~~p~---~~~l~s~~~dg~v~vwd~~~~~-~~~~~~~h~~~v~   79 (136)
                      ||.|.+  ||..+++..... ..|..     .|.+++|+|+   +.+|++++.|+.|++||+.++. .+..+.+|...|.
T Consensus        43 d~~v~i--w~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~  115 (357)
T 3i2n_A           43 TGVIQL--YEIQHGDLKLLREIEKAK-----PIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIIN  115 (357)
T ss_dssp             CEEEEE--EEECSSSEEEEEEEEESS-----CEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEE
T ss_pred             CcEEEE--EeCCCCcccceeeecccC-----cEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceE
Confidence            888888  555555544332 36888     9999999999   6999999999999999999887 7888889999999


Q ss_pred             EEE------EccCCCEEEEEEccccccccc
Q 041215           80 CST------FNTDGSIFAYSVCYDWSKGAE  103 (136)
Q Consensus        80 ~v~------~sp~~~~l~s~~~dd~~~~~~  103 (136)
                      +++      |+|++.+|++++.|.......
T Consensus       116 ~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd  145 (357)
T 3i2n_A          116 AIDGIGGLGIGEGAPEIVTGSRDGTVKVWD  145 (357)
T ss_dssp             EEEEESGGGCC-CCCEEEEEETTSCEEEEC
T ss_pred             EEeeccccccCCCccEEEEEeCCCeEEEEe
Confidence            995      578999999998877554433

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.24  E-value=6.7e-11  Score=89.86  Aligned_cols=90  Identities=19%  Similarity=0.279  Sum_probs=78.9

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCC-CcceeeecccCCCceeE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKD-SKQRLKAMSRCGQPIPC   80 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~-~~~~~~~~~~h~~~v~~   80 (136)
                      |+.||.|.+  ||..+++....+..|..     .|.+++|+  +..|++++.|+.|++||+. ....+..+..|.+.|.+
T Consensus       152 ~~~dg~i~i--wd~~~~~~~~~~~~~~~-----~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~  222 (401)
T 4aez_A          152 GLGNGLVDI--YDVESQTKLRTMAGHQA-----RVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCG  222 (401)
T ss_dssp             EETTSCEEE--EETTTCCEEEEECCCSS-----CEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEE
T ss_pred             ECCCCeEEE--EECcCCeEEEEecCCCC-----ceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeE
Confidence            567898888  77788888999999999     99999995  5799999999999999998 45667888899999999


Q ss_pred             EEEccCCCEEEEEEcccccc
Q 041215           81 STFNTDGSIFAYSVCYDWSK  100 (136)
Q Consensus        81 v~~sp~~~~l~s~~~dd~~~  100 (136)
                      ++|+|++.++++++.|....
T Consensus       223 ~~~~~~~~~l~s~~~d~~v~  242 (401)
T 4aez_A          223 LAWRSDGLQLASGGNDNVVQ  242 (401)
T ss_dssp             EEECTTSSEEEEEETTSCEE
T ss_pred             EEEcCCCCEEEEEeCCCeEE
Confidence            99999999999998876543

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.24  E-value=2.6e-11  Score=92.19  Aligned_cols=90  Identities=18%  Similarity=0.311  Sum_probs=70.7

Q ss_pred             CCceeceEEEEEeeCCCCc-----------ceeEEEeee------------CCCCccceeEEEEeCCC--CEEEEEcCCC
Q 041215            1 VGSIEGRVGVHHLDDSQQS-----------KNFTFKCHR------------DGSEIYSVNSLNFHPIH--HTFATAGSDG   55 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~-----------~~~~l~~h~------------~~~~~~~v~~l~~~p~~--~~l~s~~~dg   55 (136)
                      +|+.||.|.+|.+  .++.           ....+.+|.            .     .|.+++|+|++  ..|++++.|+
T Consensus        45 ~g~~dg~v~iw~~--~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~-----~V~~l~~~~~~~~~~l~s~s~d~  117 (447)
T 3dw8_B           45 TGDKGGRVVIFQQ--EQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEE-----KINKIRWLPQKNAAQFLLSTNDK  117 (447)
T ss_dssp             EEETTSEEEEEEE--CC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECC-----CCCEEEECCCCSSSEEEEEECSS
T ss_pred             EEcCCCeEEEEEe--cCCCCCCcccccceeEecccccccccccccccccccC-----ceEEEEEcCCCCcceEEEeCCCC
Confidence            3678999999555  4333           467788887            7     89999999998  7999999999


Q ss_pred             cEEEEeCCCccee---------------------------------------ee-cccCCCceeEEEEccCCCEEEEEEc
Q 041215           56 AFNFWDKDSKQRL---------------------------------------KA-MSRCGQPIPCSTFNTDGSIFAYSVC   95 (136)
Q Consensus        56 ~v~vwd~~~~~~~---------------------------------------~~-~~~h~~~v~~v~~sp~~~~l~s~~~   95 (136)
                      .|++||+.++...                                       .. ..+|...|.+++|+|++.+|++| .
T Consensus       118 ~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~  196 (447)
T 3dw8_B          118 TIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-D  196 (447)
T ss_dssp             CEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-C
T ss_pred             eEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-C
Confidence            9999998764331                                       12 35799999999999999999987 5


Q ss_pred             ccc
Q 041215           96 YDW   98 (136)
Q Consensus        96 dd~   98 (136)
                      |..
T Consensus       197 d~~  199 (447)
T 3dw8_B          197 DLR  199 (447)
T ss_dssp             SSE
T ss_pred             CCe
Confidence            553

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.23  E-value=5.3e-11  Score=86.12  Aligned_cols=88  Identities=17%  Similarity=0.194  Sum_probs=73.8

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEe-eeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKC-HRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC   80 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~-h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~   80 (136)
                      |+.||.+.+  ||  .......+.. |..     .+.+++|+|++. +++++.|+.|++||+.++..+..+..|...|.+
T Consensus       161 ~~~d~~i~i--~d--~~~~~~~~~~~~~~-----~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~  230 (313)
T 3odt_A          161 ASADKTIKL--WQ--NDKVIKTFSGIHND-----VVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYC  230 (313)
T ss_dssp             EETTSCEEE--EE--TTEEEEEECSSCSS-----CEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred             EECCCCEEE--Ee--cCceEEEEeccCcc-----cEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEE
Confidence            567888888  55  3455566665 777     999999999988 889999999999999999999999999999999


Q ss_pred             EEEccCCCEEEEEEcccccc
Q 041215           81 STFNTDGSIFAYSVCYDWSK  100 (136)
Q Consensus        81 v~~sp~~~~l~s~~~dd~~~  100 (136)
                      ++|+|++ .+++++.|....
T Consensus       231 ~~~~~~~-~l~~~~~dg~v~  249 (313)
T 3odt_A          231 IKLLPNG-DIVSCGEDRTVR  249 (313)
T ss_dssp             EEECTTS-CEEEEETTSEEE
T ss_pred             EEEecCC-CEEEEecCCEEE
Confidence            9999999 577777776443

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.22  E-value=5.7e-11  Score=90.35  Aligned_cols=91  Identities=15%  Similarity=0.131  Sum_probs=70.7

Q ss_pred             eeceEEEEEeeCCC-CcceeE-------EEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCcce----eee
Q 041215            4 IEGRVGVHHLDDSQ-QSKNFT-------FKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQR----LKA   70 (136)
Q Consensus         4 ~dG~v~i~~~d~~~-~~~~~~-------l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~~----~~~   70 (136)
                      .||.|.+  ||... ......       +..|..     .|.+++|+|++ .+|++++.|+.|++||+.++..    +..
T Consensus       196 ~d~~i~i--wd~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  268 (447)
T 3dw8_B          196 DDLRINL--WHLEITDRSFNIVDIKPANMEELTE-----VITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKL  268 (447)
T ss_dssp             CSSEEEE--EETTEEEEEEEEEECCCSSGGGCCC-----CEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEE
T ss_pred             CCCeEEE--EECCCCCceeeeeecccccccccCc-----ceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeE
Confidence            5888888  66663 333332       346777     99999999999 9999999999999999998876    677


Q ss_pred             cccCCC------------ceeEEEEccCCCEEEEEEcccccccc
Q 041215           71 MSRCGQ------------PIPCSTFNTDGSIFAYSVCYDWSKGA  102 (136)
Q Consensus        71 ~~~h~~------------~v~~v~~sp~~~~l~s~~~dd~~~~~  102 (136)
                      +..|..            .|.+++|+|++.+|++++. ......
T Consensus       269 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iw  311 (447)
T 3dw8_B          269 FEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVW  311 (447)
T ss_dssp             ECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEE
T ss_pred             eccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEE
Confidence            777765            8999999999999998876 543333

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.20  E-value=6.7e-11  Score=90.80  Aligned_cols=88  Identities=17%  Similarity=0.258  Sum_probs=76.3

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEe---eeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeec-----cc
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKC---HRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAM-----SR   73 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~---h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~-----~~   73 (136)
                      |+.||.|.+  ||.++++....+..   |..     .|.+++|+  +.+|++++.||.|++||+.++..+..+     ..
T Consensus       335 ~~~dg~i~v--wd~~~~~~~~~~~~~~~~~~-----~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~  405 (445)
T 2ovr_B          335 GNADSTVKI--WDIKTGQCLQTLQGPNKHQS-----AVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGG  405 (445)
T ss_dssp             EETTSCEEE--EETTTCCEEEEECSTTSCSS-----CEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGG
T ss_pred             EeCCCeEEE--EECCCCcEEEEEccCCCCCC-----CEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCC
Confidence            677899988  77788888888876   667     89999996  589999999999999999999888777     46


Q ss_pred             CCCceeEEEEccCCCEEEEEEcccc
Q 041215           74 CGQPIPCSTFNTDGSIFAYSVCYDW   98 (136)
Q Consensus        74 h~~~v~~v~~sp~~~~l~s~~~dd~   98 (136)
                      |.+.|.+++|+|++.++++|+.|..
T Consensus       406 ~~~~v~~~~~s~~~~~la~~~~dg~  430 (445)
T 2ovr_B          406 SGGVVWRIRASNTKLVCAVGSRNGT  430 (445)
T ss_dssp             GTCEEEEEEECSSEEEEEEECSSSS
T ss_pred             CCceEEEEEecCCEEEEEEcccCCC
Confidence            7899999999999999999877764

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.20  E-value=1.1e-10  Score=85.68  Aligned_cols=92  Identities=11%  Similarity=0.072  Sum_probs=73.9

Q ss_pred             CceeceEEEEEeeCCC-Cc--ceeEEEeeeCCCCccceeEEEEeC-CCCEEEEEcCCCcEEEEeCCCc------ceeeec
Q 041215            2 GSIEGRVGVHHLDDSQ-QS--KNFTFKCHRDGSEIYSVNSLNFHP-IHHTFATAGSDGAFNFWDKDSK------QRLKAM   71 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~-~~--~~~~l~~h~~~~~~~~v~~l~~~p-~~~~l~s~~~dg~v~vwd~~~~------~~~~~~   71 (136)
                      |+.||.|.+  ||.+. +.  .......|..     .+.+++|+| ++.++++++.|+.|++|++...      .....+
T Consensus       166 ~~~d~~i~i--~d~~~~~~~~~~~~~~~~~~-----~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~  238 (342)
T 1yfq_A          166 GMNNSQVQW--FRLPLCEDDNGTIEESGLKY-----QIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF  238 (342)
T ss_dssp             EESTTEEEE--EESSCCTTCCCEEEECSCSS-----CEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEE
T ss_pred             EeCCCeEEE--EECCccccccceeeecCCCC-----ceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceee
Confidence            567888888  66655 33  3333445667     999999999 9999999999999999999876      667777


Q ss_pred             ccCCC---------ceeEEEEccCCCEEEEEEcccccc
Q 041215           72 SRCGQ---------PIPCSTFNTDGSIFAYSVCYDWSK  100 (136)
Q Consensus        72 ~~h~~---------~v~~v~~sp~~~~l~s~~~dd~~~  100 (136)
                      ..|..         .|.+++|+|++.+|++++.|....
T Consensus       239 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~  276 (342)
T 1yfq_A          239 RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIIS  276 (342)
T ss_dssp             ECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEE
T ss_pred             ecccccccccccceeEEEEEEcCCCCEEEEecCCceEE
Confidence            77755         999999999999999998876443

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.20  E-value=1.1e-10  Score=87.91  Aligned_cols=91  Identities=11%  Similarity=0.061  Sum_probs=71.5

Q ss_pred             Cceece-EEEEEeeCCCCcceeEEE-e-eeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcce--eeecc----
Q 041215            2 GSIEGR-VGVHHLDDSQQSKNFTFK-C-HRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQR--LKAMS----   72 (136)
Q Consensus         2 gs~dG~-v~i~~~d~~~~~~~~~l~-~-h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~--~~~~~----   72 (136)
                      ||.||+ |++  ||.++++....+. + |..     .|.+++|+|++.+|++++.|+.|++||+.....  ...+.    
T Consensus       213 ~s~d~~~v~i--wd~~~~~~~~~~~~g~h~~-----~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~  285 (355)
T 3vu4_A          213 CSQDGTIIRV--FKTEDGVLVREFRRGLDRA-----DVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWIN  285 (355)
T ss_dssp             EETTCSEEEE--EETTTCCEEEEEECTTCCS-----CEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEE
T ss_pred             EeCCCCEEEE--EECCCCcEEEEEEcCCCCC-----cEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceee
Confidence            678998 888  8888899999998 5 888     999999999999999999999999999875421  11110    


Q ss_pred             -----------------cCCCceeEEEEccCCCEEEEEEccccc
Q 041215           73 -----------------RCGQPIPCSTFNTDGSIFAYSVCYDWS   99 (136)
Q Consensus        73 -----------------~h~~~v~~v~~sp~~~~l~s~~~dd~~   99 (136)
                                       ....+...++|++++..+++++.|.--
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~  329 (355)
T 3vu4_A          286 MKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMI  329 (355)
T ss_dssp             CCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEE
T ss_pred             ccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeE
Confidence                             112334779999999999988776533

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.17  E-value=1.9e-10  Score=88.22  Aligned_cols=89  Identities=17%  Similarity=0.278  Sum_probs=79.2

Q ss_pred             CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC   80 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~   80 (136)
                      +|+.||.|.+  ||.++++....+.+|..     .|.++.++  +..+++++.|+.|++||+.++..+..+.+|...|.+
T Consensus       271 s~~~dg~i~v--wd~~~~~~~~~~~~~~~-----~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~  341 (435)
T 1p22_A          271 SASGDRTIKV--WNTSTCEFVRTLNGHKR-----GIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC  341 (435)
T ss_dssp             EEETTSEEEE--EETTTCCEEEEEECCSS-----CEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE
T ss_pred             EEeCCCeEEE--EECCcCcEEEEEcCCCC-----cEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEE
Confidence            3677899987  88888999999999999     99999995  589999999999999999999999999999999999


Q ss_pred             EEEccCCCEEEEEEcccccc
Q 041215           81 STFNTDGSIFAYSVCYDWSK  100 (136)
Q Consensus        81 v~~sp~~~~l~s~~~dd~~~  100 (136)
                      ++|  ++.++++|+.|....
T Consensus       342 ~~~--~~~~l~sg~~dg~i~  359 (435)
T 1p22_A          342 IRF--DNKRIVSGAYDGKIK  359 (435)
T ss_dssp             EEC--CSSEEEEEETTSCEE
T ss_pred             EEe--cCCEEEEEeCCCcEE
Confidence            999  788999998877544

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.17  E-value=5.8e-11  Score=90.49  Aligned_cols=93  Identities=14%  Similarity=-0.007  Sum_probs=59.5

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeC--------------CCCccceeEEEEeCC--CCEEEEEcCCCcEEEEeCCCc
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRD--------------GSEIYSVNSLNFHPI--HHTFATAGSDGAFNFWDKDSK   65 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~--------------~~~~~~v~~l~~~p~--~~~l~s~~~dg~v~vwd~~~~   65 (136)
                      ++.|+++.+  ||...+.....+..|..              .... ....+.++|.  +.++++++.|+.|++||+.++
T Consensus       273 ~s~d~~i~v--wd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~  349 (393)
T 4gq1_A          273 MCKSGAWLR--WNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFP-SLLGACPHPRYMDYFATAHSQHGLIQLINTYEK  349 (393)
T ss_dssp             ECTTSEEEE--EEC-------------------CCSCSEEEECSSC-CSSCCEECSSCTTEEEEEETTTTEEEEEETTCT
T ss_pred             EeCCCCEEE--EECccCCCCceEeeecCccccEEEccccccccccC-cceeEEEccCCCCEEEEEECCCCEEEEEECCCC
Confidence            567888888  66665555545444433              0000 1122334432  246788889999999999999


Q ss_pred             ceeeecccCCCceeEEEEccCCCEEEEEEccc
Q 041215           66 QRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYD   97 (136)
Q Consensus        66 ~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd   97 (136)
                      .....+..|..+|.+|+|+|+|++||+++.+.
T Consensus       350 ~~~~~~~~~~~~V~svafspdG~~LA~as~~G  381 (393)
T 4gq1_A          350 DSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS  381 (393)
T ss_dssp             TCCEEEEECSSCEEEEEECTTSSEEEEEESSE
T ss_pred             cEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence            88888888999999999999999999987665

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.14  E-value=3.7e-10  Score=85.39  Aligned_cols=87  Identities=11%  Similarity=0.161  Sum_probs=70.9

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceee--ecccCCCcee
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLK--AMSRCGQPIP   79 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~--~~~~h~~~v~   79 (136)
                      |+.|++|+|  ||..+++....+. |..     .|.+++|+|+|.+|++++.++ +.+|+..++..+.  ....|...|.
T Consensus       153 ~~~d~~i~i--wd~~~~~~~~~~~-~~~-----~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~~~~~~~~~~~v~  223 (365)
T 4h5i_A          153 SKVPAIMRI--IDPSDLTEKFEIE-TRG-----EVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCIARKTDFDKNWSLS  223 (365)
T ss_dssp             SCSSCEEEE--EETTTTEEEEEEE-CSS-----CCCEEEECTTSSEEEEECSSC-EEEEETTTCCEEEEECCCCTTEEEE
T ss_pred             CCCCCEEEE--eECCCCcEEEEeC-CCC-----ceEEEEEccCCceEEecccee-EEEEEeccCcceeeeecCCCCCCEE
Confidence            456888888  8888888888875 778     899999999999999998655 6667777666543  3456888999


Q ss_pred             EEEEccCCCEEEEEEccc
Q 041215           80 CSTFNTDGSIFAYSVCYD   97 (136)
Q Consensus        80 ~v~~sp~~~~l~s~~~dd   97 (136)
                      +++|+|++.++++++.+.
T Consensus       224 ~v~fspdg~~l~~~s~d~  241 (365)
T 4h5i_A          224 KINFIADDTVLIAASLKK  241 (365)
T ss_dssp             EEEEEETTEEEEEEEESS
T ss_pred             EEEEcCCCCEEEEEecCC
Confidence            999999999999987765

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.12  E-value=2.6e-10  Score=93.81  Aligned_cols=94  Identities=19%  Similarity=0.275  Sum_probs=76.8

Q ss_pred             CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeC-------------CCCEEEEEcCCCcEEEEeCCCc--
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHP-------------IHHTFATAGSDGAFNFWDKDSK--   65 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p-------------~~~~l~s~~~dg~v~vwd~~~~--   65 (136)
                      +|+.||.|.+|.++.........+..|..     .|.+++|+|             ++..|++++.||.|++||+.++  
T Consensus       118 sgs~dg~I~vwdl~~~~~~~~~~~~~~~~-----~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~  192 (753)
T 3jro_A          118 VASSDGKVSVVEFKENGTTSPIIIDAHAI-----GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ  192 (753)
T ss_dssp             EEETTSEEEEEECCSSSCCCCEEEECCSS-----CEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTT
T ss_pred             EEeCCCcEEEEEeecCCCcceeEeecCCC-----ceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcc
Confidence            36778999884443333355667778888     999999999             5899999999999999999876  


Q ss_pred             --ceeeecccCCCceeEEEEccC---CCEEEEEEccccc
Q 041215           66 --QRLKAMSRCGQPIPCSTFNTD---GSIFAYSVCYDWS   99 (136)
Q Consensus        66 --~~~~~~~~h~~~v~~v~~sp~---~~~l~s~~~dd~~   99 (136)
                        .....+.+|..+|.+++|+|+   +.++++++.|...
T Consensus       193 ~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I  231 (753)
T 3jro_A          193 TYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC  231 (753)
T ss_dssp             EEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCE
T ss_pred             cceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEE
Confidence              455677889999999999999   8999998887643

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.11  E-value=5.6e-10  Score=85.61  Aligned_cols=88  Identities=15%  Similarity=0.181  Sum_probs=62.8

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS   81 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v   81 (136)
                      |+.||+|.+  ||..+++....+.+|..     .|.+++|  ++..+++++.|+.|++||+.++..+..+.+|...|.++
T Consensus       215 ~s~dg~i~~--wd~~~~~~~~~~~~~~~-----~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  285 (445)
T 2ovr_B          215 GSRDATLRV--WDIETGQCLHVLMGHVA-----AVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL  285 (445)
T ss_dssp             EETTSEEEE--EESSSCCEEEEEECCSS-----CEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEE
T ss_pred             EeCCCEEEE--EECCCCcEEEEEcCCcc-----cEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEE
Confidence            556777766  56666677777777777     7777777  56677777777777777777777777777777777777


Q ss_pred             EEccCCCEEEEEEcccccc
Q 041215           82 TFNTDGSIFAYSVCYDWSK  100 (136)
Q Consensus        82 ~~sp~~~~l~s~~~dd~~~  100 (136)
                      +|  ++.++++++.|....
T Consensus       286 ~~--~~~~l~~~~~d~~i~  302 (445)
T 2ovr_B          286 QF--DGIHVVSGSLDTSIR  302 (445)
T ss_dssp             EE--CSSEEEEEETTSCEE
T ss_pred             EE--CCCEEEEEeCCCeEE
Confidence            77  667777776665443

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.09  E-value=7.8e-10  Score=84.28  Aligned_cols=101  Identities=10%  Similarity=0.087  Sum_probs=75.2

Q ss_pred             CCceeceEEEEEeeCC-CCcceeEEEeeeC----C-C--CccceeEEE--EeCCCCEEEEEcCCCcEEEEeCCCcceeee
Q 041215            1 VGSIEGRVGVHHLDDS-QQSKNFTFKCHRD----G-S--EIYSVNSLN--FHPIHHTFATAGSDGAFNFWDKDSKQRLKA   70 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~-~~~~~~~l~~h~~----~-~--~~~~v~~l~--~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~   70 (136)
                      +|+.||.|.+|.++.. .++....+..|.-    + .  +...+.++.  +++++.+|++++.|+.|++||+.++..+..
T Consensus       128 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  207 (437)
T 3gre_A          128 VSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQI  207 (437)
T ss_dssp             EEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             EEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEE
Confidence            3678999999665422 3444444333210    0 0  222566766  568889999999999999999999999988


Q ss_pred             ccc--CCCceeEEEEccCCCEEEEEEccccccc
Q 041215           71 MSR--CGQPIPCSTFNTDGSIFAYSVCYDWSKG  101 (136)
Q Consensus        71 ~~~--h~~~v~~v~~sp~~~~l~s~~~dd~~~~  101 (136)
                      +..  |.+.|.+++|+|++.++++|+.|.....
T Consensus       208 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~i  240 (437)
T 3gre_A          208 IENSPRHGAVSSICIDEECCVLILGTTRGIIDI  240 (437)
T ss_dssp             EECCGGGCCEEEEEECTTSCEEEEEETTSCEEE
T ss_pred             EccCCCCCceEEEEECCCCCEEEEEcCCCeEEE
Confidence            887  8899999999999999999988875443

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.06  E-value=6e-10  Score=86.57  Aligned_cols=85  Identities=13%  Similarity=0.041  Sum_probs=67.4

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccC-------
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRC-------   74 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h-------   74 (136)
                      |+.||+|.+  ||.+++........|..     .|.+++|+|++.+|++++.|+.|++||.. +.....+..|       
T Consensus       168 ~s~Dg~v~i--wD~~~~~~~~~~~~~~~-----~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~  239 (434)
T 2oit_A          168 CLADGSIAV--LQVTETVKVCATLPSTV-----AVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDH  239 (434)
T ss_dssp             EETTSCEEE--EEESSSEEEEEEECGGG-----CEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTS
T ss_pred             EECCCeEEE--EEcCCCcceeeccCCCC-----ceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCC
Confidence            678999988  66676666656667788     99999999999999999999999999998 4444444333       


Q ss_pred             CCceeEEEEccCCCEEEEEE
Q 041215           75 GQPIPCSTFNTDGSIFAYSV   94 (136)
Q Consensus        75 ~~~v~~v~~sp~~~~l~s~~   94 (136)
                      ...|.+++|++++.++++.+
T Consensus       240 ~~~v~~v~w~~~~~~l~~~~  259 (434)
T 2oit_A          240 PVRVLDVLWIGTYVFAIVYA  259 (434)
T ss_dssp             CEEEEEEEEEETTEEEEEEE
T ss_pred             ceeEEEEEEecCceEEEEEc
Confidence            23899999999888776544

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.05  E-value=1.7e-09  Score=81.06  Aligned_cols=86  Identities=9%  Similarity=0.074  Sum_probs=71.1

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEE-EEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTF-ATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC   80 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l-~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~   80 (136)
                      ++.||.|.+  ||..+++....+..| .     .+.+++|+|++..+ ++++.++.|++||+.+++.+..+..+. .+.+
T Consensus         8 ~~~d~~v~v--~d~~~~~~~~~~~~~-~-----~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~   78 (391)
T 1l0q_A            8 NSESDNISV--IDVTSNKVTATIPVG-S-----NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQG   78 (391)
T ss_dssp             ETTTTEEEE--EETTTTEEEEEEECS-S-----SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEE
T ss_pred             cCCCCEEEE--EECCCCeEEEEeecC-C-----CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-Cccc
Confidence            567888887  788888888887754 4     67999999999865 777789999999999998888876654 8999


Q ss_pred             EEEccCCCEEEEEEcc
Q 041215           81 STFNTDGSIFAYSVCY   96 (136)
Q Consensus        81 v~~sp~~~~l~s~~~d   96 (136)
                      ++|+|+++.++.++.+
T Consensus        79 ~~~spdg~~l~~~~~~   94 (391)
T 1l0q_A           79 VAVSPDGKQVYVTNMA   94 (391)
T ss_dssp             EEECTTSSEEEEEETT
T ss_pred             eEECCCCCEEEEEECC
Confidence            9999999988766554

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.05  E-value=1.1e-09  Score=83.52  Aligned_cols=84  Identities=13%  Similarity=0.141  Sum_probs=69.6

Q ss_pred             eceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeC---CCCEEEEEcCCCcEEEEeCCCcceeeecccCC---Cce
Q 041215            5 EGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHP---IHHTFATAGSDGAFNFWDKDSKQRLKAMSRCG---QPI   78 (136)
Q Consensus         5 dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p---~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~---~~v   78 (136)
                      |+.|.+|.+. ..++.+..+..|..     .+..++|+|   ++.+|++++.|++|++||+.++++++++.+|.   ..+
T Consensus       156 d~~V~~~~~s-~dG~~~~s~~~~~~-----~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v  229 (356)
T 2w18_A          156 DQQVEVMTFA-EDGGGKENQFLMPP-----EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASV  229 (356)
T ss_dssp             TCEEEEEEEC-TTSCEEEEEEECCC-----SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCC
T ss_pred             CCcEEEEEEC-CCCceeeeeccCCC-----ceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeee
Confidence            7888885542 34677788888988     899999999   67999999999999999999999999998654   467


Q ss_pred             eEEEEccCCCEEEEEE
Q 041215           79 PCSTFNTDGSIFAYSV   94 (136)
Q Consensus        79 ~~v~~sp~~~~l~s~~   94 (136)
                      .+++|+|++.++++++
T Consensus       230 ~~vafSpdG~~lvs~s  245 (356)
T 2w18_A          230 CHKAYSEMGLLFIVLS  245 (356)
T ss_dssp             EEEEEEETTEEEEEEC
T ss_pred             EEEEECCCCCEEEEec
Confidence            7889999999886544

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=98.99  E-value=1e-09  Score=83.27  Aligned_cols=87  Identities=10%  Similarity=0.043  Sum_probs=72.5

Q ss_pred             CceeceEEEEEeeCCCCccee-----EEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCC
Q 041215            2 GSIEGRVGVHHLDDSQQSKNF-----TFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQ   76 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~-----~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~   76 (136)
                      ++.|+.|.+  ||..+++...     .+..|..     .|.+++|+|++.++++++.|+.|++||+.++..+..+..|..
T Consensus       140 ~~~~~~i~~--~d~~~g~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~  212 (433)
T 3bws_A          140 LLEDEGMDV--LDINSGQTVRLSPPEKYKKKLG-----FVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGK  212 (433)
T ss_dssp             BTTSSSEEE--EETTTCCEEEECCCHHHHTTCC-----EEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSS
T ss_pred             eCCCCeEEE--EECCCCeEeeecCcccccccCC-----ceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCC
Confidence            455677776  7777776665     3345667     899999999999999999999999999999988888888999


Q ss_pred             ceeEEEEccCCCEEEEEEc
Q 041215           77 PIPCSTFNTDGSIFAYSVC   95 (136)
Q Consensus        77 ~v~~v~~sp~~~~l~s~~~   95 (136)
                      .+.+++|+|++..+++++.
T Consensus       213 ~~~~~~~~~~~~~l~~~~~  231 (433)
T 3bws_A          213 WSKILLYDPIRDLVYCSNW  231 (433)
T ss_dssp             SEEEEEEETTTTEEEEEET
T ss_pred             CeeEEEEcCCCCEEEEEec
Confidence            9999999999998865554

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=98.93  E-value=2.6e-09  Score=86.20  Aligned_cols=83  Identities=11%  Similarity=0.095  Sum_probs=65.2

Q ss_pred             CCceeceEEEEEeeCCCCcc-------eeEE----EeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcce--
Q 041215            1 VGSIEGRVGVHHLDDSQQSK-------NFTF----KCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQR--   67 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~-------~~~l----~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~--   67 (136)
                      +|+.||+|.+  ||..++..       +.++    .+|..     .|.+++|+|+|  +++++.|+.|++||+..+..  
T Consensus       146 sgs~DGtVkI--Wd~~~~~l~~~~~i~l~ti~~~~~gh~~-----~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~  216 (588)
T 2j04_A          146 VGNEDGELQF--FSIRKNSENTPEFYFESSIRLSDAGSKD-----WVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQP  216 (588)
T ss_dssp             EEETTSEEEE--EECCCCTTTCCCCEEEEEEECSCTTCCC-----CEEEEEEETTE--EEEEETTCCEEEECCCSSSSCC
T ss_pred             EEcCCCEEEE--EECCCCccccccceeeeeeecccccccc-----cEEEEEEcCCc--EEEEeCCCeEEEEECCCCcccc
Confidence            3688999999  55555542       4666    34556     99999999999  78888999999999988763  


Q ss_pred             -eeec-ccCCCceeEEEEccCCCEEEEEE
Q 041215           68 -LKAM-SRCGQPIPCSTFNTDGSIFAYSV   94 (136)
Q Consensus        68 -~~~~-~~h~~~v~~v~~sp~~~~l~s~~   94 (136)
                       ..++ .+|...|.+|+|+  +..+|+++
T Consensus       217 ~~~tL~~~h~~~V~svaFs--g~~LASa~  243 (588)
T 2j04_A          217 VSRMIQNASRRKITDLKIV--DYKVVLTC  243 (588)
T ss_dssp             CEEEEECCCSSCCCCEEEE--TTEEEEEC
T ss_pred             ceeeecccccCcEEEEEEE--CCEEEEEe
Confidence             3456 4788999999999  68888875

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.91  E-value=1.6e-08  Score=71.86  Aligned_cols=84  Identities=11%  Similarity=0.074  Sum_probs=67.6

Q ss_pred             ceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCC-cceeeecccC-CCceeE
Q 041215            3 SIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDS-KQRLKAMSRC-GQPIPC   80 (136)
Q Consensus         3 s~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~-~~~~~~~~~h-~~~v~~   80 (136)
                      +.|++|.+  ||..+++.. .+..|..     .|.+++|+|++.+|++++ ++.|.+||+.+ +........+ ...+.+
T Consensus        19 ~~~~~i~~--~d~~~~~~~-~~~~~~~-----~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~   89 (297)
T 2ojh_A           19 SMRSSIEI--FNIRTRKMR-VVWQTPE-----LFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNND   89 (297)
T ss_dssp             CCCEEEEE--EETTTTEEE-EEEEESS-----CCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSC
T ss_pred             CcceeEEE--EeCCCCcee-eeccCCc-----ceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccc
Confidence            45666765  787776655 4456888     999999999999988876 78999999998 8776666555 378899


Q ss_pred             EEEccCCCEEEEEEc
Q 041215           81 STFNTDGSIFAYSVC   95 (136)
Q Consensus        81 v~~sp~~~~l~s~~~   95 (136)
                      ++|+|+++++++++.
T Consensus        90 ~~~spdg~~l~~~~~  104 (297)
T 2ojh_A           90 HGISPDGALYAISDK  104 (297)
T ss_dssp             CEECTTSSEEEEEEC
T ss_pred             eEECCCCCEEEEEEe
Confidence            999999999998873

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=98.89  E-value=2e-08  Score=76.10  Aligned_cols=86  Identities=13%  Similarity=0.095  Sum_probs=71.5

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEE-EEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTF-ATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC   80 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l-~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~   80 (136)
                      ++.||.|.+  ||..+++....+..|..     .+.+++|+|++..+ ++++.++.|.+||+.++..+..+..+ ..+.+
T Consensus       187 ~~~d~~v~~--~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~  258 (433)
T 3bws_A          187 QMQANAVHV--FDLKTLAYKATVDLTGK-----WSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRG  258 (433)
T ss_dssp             EGGGTEEEE--EETTTCCEEEEEECSSS-----SEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEE
T ss_pred             ECCCCEEEE--EECCCceEEEEEcCCCC-----CeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceE
Confidence            456788877  78788888888888888     99999999999876 56667899999999998887777654 56999


Q ss_pred             EEEccCCCEEEEEEc
Q 041215           81 STFNTDGSIFAYSVC   95 (136)
Q Consensus        81 v~~sp~~~~l~s~~~   95 (136)
                      ++|+|++..+++++.
T Consensus       259 ~~~~~~g~~l~~~~~  273 (433)
T 3bws_A          259 LLLSKDGKELYIAQF  273 (433)
T ss_dssp             EEECTTSSEEEEEEE
T ss_pred             EEEcCCCCEEEEEEC
Confidence            999999998887763

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=98.84  E-value=5.1e-08  Score=74.92  Aligned_cols=80  Identities=15%  Similarity=0.146  Sum_probs=64.8

Q ss_pred             ceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCC---cEEEEeCCCcceeeecccCCCceeEEE
Q 041215            6 GRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDG---AFNFWDKDSKQRLKAMSRCGQPIPCST   82 (136)
Q Consensus         6 G~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg---~v~vwd~~~~~~~~~~~~h~~~v~~v~   82 (136)
                      +.|.+  ||.. +.....+..|..     .+.+++|+|+|+.|+.++.++   .|++||+.++... .+..|...+.+++
T Consensus       159 ~~i~i--~d~~-g~~~~~l~~~~~-----~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~  229 (415)
T 2hqs_A          159 YELRV--SDYD-GYNQFVVHRSPQ-----PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPA  229 (415)
T ss_dssp             EEEEE--EETT-SCSCEEEEEESS-----CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEE
T ss_pred             ceEEE--EcCC-CCCCEEEeCCCC-----cceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEE
Confidence            45544  7765 345677788988     999999999999999998875   8999999988764 5667788999999


Q ss_pred             EccCCCEEEEEE
Q 041215           83 FNTDGSIFAYSV   94 (136)
Q Consensus        83 ~sp~~~~l~s~~   94 (136)
                      |+|+++.|+..+
T Consensus       230 ~spdg~~la~~~  241 (415)
T 2hqs_A          230 FSPDGSKLAFAL  241 (415)
T ss_dssp             ECTTSSEEEEEE
T ss_pred             EcCCCCEEEEEE
Confidence            999999888443

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=98.79  E-value=9.2e-08  Score=71.51  Aligned_cols=87  Identities=11%  Similarity=0.096  Sum_probs=67.3

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEE-EEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTF-ATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC   80 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l-~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~   80 (136)
                      ++.|+.|.+  ||..+++....+.. ..     .+.+++|+|++..| ++++.++.|++||+.+++.+..+..+ ..+.+
T Consensus        50 ~~~d~~i~v--~d~~~~~~~~~~~~-~~-----~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~  120 (391)
T 1l0q_A           50 NAHSNDVSI--IDTATNNVIATVPA-GS-----SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLG  120 (391)
T ss_dssp             EGGGTEEEE--EETTTTEEEEEEEC-SS-----SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEE
T ss_pred             CCCCCeEEE--EECCCCeEEEEEEC-CC-----CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcce
Confidence            346788877  88888887777653 44     78999999999866 56667799999999998887777554 57899


Q ss_pred             EEEccCCCEE-EEEEccc
Q 041215           81 STFNTDGSIF-AYSVCYD   97 (136)
Q Consensus        81 v~~sp~~~~l-~s~~~dd   97 (136)
                      ++|+|+++.+ ++++.+.
T Consensus       121 ~~~s~dg~~l~~~~~~~~  138 (391)
T 1l0q_A          121 LALSPDGKKLYVTNNGDK  138 (391)
T ss_dssp             EEECTTSSEEEEEETTTT
T ss_pred             EEECCCCCEEEEEeCCCC
Confidence            9999999977 4544444

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=98.74  E-value=1.6e-07  Score=72.08  Aligned_cols=82  Identities=12%  Similarity=0.080  Sum_probs=64.8

Q ss_pred             EEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEE-EEcCCCc--EEEEeCCCcceeeecccCCCceeEEEEcc
Q 041215            9 GVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFA-TAGSDGA--FNFWDKDSKQRLKAMSRCGQPIPCSTFNT   85 (136)
Q Consensus         9 ~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~-s~~~dg~--v~vwd~~~~~~~~~~~~h~~~v~~v~~sp   85 (136)
                      .+++||..+++.. .+..|..     .+.+++|+|+|+.|+ +++.++.  |.+||+.++.. ..+..|...+.+++|+|
T Consensus       204 ~i~~~d~~tg~~~-~l~~~~~-----~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~sp  276 (415)
T 2hqs_A          204 ALVIQTLANGAVR-QVASFPR-----HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFP  276 (415)
T ss_dssp             EEEEEETTTCCEE-EEECCSS-----CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECT
T ss_pred             EEEEEECCCCcEE-EeecCCC-----cccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECC
Confidence            4455888777664 4566777     899999999998666 7766654  99999988765 56778888999999999


Q ss_pred             CCCEEEEEEccc
Q 041215           86 DGSIFAYSVCYD   97 (136)
Q Consensus        86 ~~~~l~s~~~dd   97 (136)
                      +++.|++++.++
T Consensus       277 dg~~l~~~s~~~  288 (415)
T 2hqs_A          277 DSQNLAFTSDQA  288 (415)
T ss_dssp             TSSEEEEEECTT
T ss_pred             CCCEEEEEECCC
Confidence            999888877643

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=98.70  E-value=1.7e-07  Score=74.84  Aligned_cols=86  Identities=8%  Similarity=0.100  Sum_probs=71.1

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeC--CCcceeeecccCCCcee
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDK--DSKQRLKAMSRCGQPIP   79 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~--~~~~~~~~~~~h~~~v~   79 (136)
                      ++.|++|.+  ||..+++...++... .     .+..++|+|++++|++++.|+.|.+||+  .++.++.++. +...+.
T Consensus       155 ~~~d~~V~v--~D~~t~~~~~~i~~g-~-----~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~  225 (543)
T 1nir_A          155 LRDAGQIAL--VDGDSKKIVKVIDTG-Y-----AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEAR  225 (543)
T ss_dssp             EGGGTEEEE--EETTTCCEEEEEECS-T-----TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEE
T ss_pred             EcCCCeEEE--EECCCceEEEEEecC-c-----ccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcc
Confidence            356778877  788888888887632 2     5789999999999999999999999999  7888888876 456779


Q ss_pred             EEEEcc----CCCEEEEEEcc
Q 041215           80 CSTFNT----DGSIFAYSVCY   96 (136)
Q Consensus        80 ~v~~sp----~~~~l~s~~~d   96 (136)
                      +++|+|    ++++++++...
T Consensus       226 ~va~sp~~~~dg~~l~v~~~~  246 (543)
T 1nir_A          226 SVESSKFKGYEDRYTIAGAYW  246 (543)
T ss_dssp             EEEECCSTTCTTTEEEEEEEE
T ss_pred             eEEeCCCcCCCCCEEEEEEcc
Confidence            999999    99998887653

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.70  E-value=9e-08  Score=67.94  Aligned_cols=89  Identities=7%  Similarity=0.087  Sum_probs=68.2

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEc-CCCcEEEEeCC-CcceeeecccCCCcee
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAG-SDGAFNFWDKD-SKQRLKAMSRCGQPIP   79 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~-~dg~v~vwd~~-~~~~~~~~~~h~~~v~   79 (136)
                      ++.|+.+.+|.++..++.. ..+..+..     .+.+++|+|++..|+.++ .++.+.+|++. .+..+..+..|...+.
T Consensus       147 ~~~~~~~~l~~~~~~~~~~-~~~~~~~~-----~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  220 (297)
T 2ojh_A          147 GIRDQVFDIYSMDIDSGVE-TRLTHGEG-----RNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDW  220 (297)
T ss_dssp             EEETTEEEEEEEETTTCCE-EECCCSSS-----CEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEE
T ss_pred             ECCCCceEEEEEECCCCcc-eEcccCCC-----ccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccC
Confidence            3457788888877765443 34455666     899999999998766555 58889999876 4556677777888899


Q ss_pred             EEEEccCCCEEEEEEcc
Q 041215           80 CSTFNTDGSIFAYSVCY   96 (136)
Q Consensus        80 ~v~~sp~~~~l~s~~~d   96 (136)
                      +++|+|++++|++++.+
T Consensus       221 ~~~~s~dg~~l~~~~~~  237 (297)
T 2ojh_A          221 FPHPSPSGDKVVFVSYD  237 (297)
T ss_dssp             EEEECTTSSEEEEEEEE
T ss_pred             CeEECCCCCEEEEEEcC
Confidence            99999999998887765

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=98.63  E-value=2.8e-07  Score=67.38  Aligned_cols=85  Identities=6%  Similarity=-0.048  Sum_probs=65.8

Q ss_pred             ceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEc-CCCcEEEEeCCCcce-eeecccCCCceeE
Q 041215            3 SIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAG-SDGAFNFWDKDSKQR-LKAMSRCGQPIPC   80 (136)
Q Consensus         3 s~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~-~dg~v~vwd~~~~~~-~~~~~~h~~~v~~   80 (136)
                      +.++.|.+  ||..+++....+..+..     .+ .++|+|++++++.++ .++.|.+||..++.. ...+..+..+..+
T Consensus        17 ~~~~~v~~--~d~~~~~~~~~~~~~~~-----~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~   88 (331)
T 3u4y_A           17 QHLRRISF--FSTDTLEILNQITLGYD-----FV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMAD   88 (331)
T ss_dssp             GGGTEEEE--EETTTCCEEEEEECCCC-----EE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCC
T ss_pred             cCCCeEEE--EeCcccceeeeEEccCC-----cc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccc
Confidence            45677776  88888888777775555     66 999999998555554 488999999999887 6677677677666


Q ss_pred             EEEccCCCEEEEEEc
Q 041215           81 STFNTDGSIFAYSVC   95 (136)
Q Consensus        81 v~~sp~~~~l~s~~~   95 (136)
                      ++|+|++++++++..
T Consensus        89 ~~~s~dg~~l~~~~~  103 (331)
T 3u4y_A           89 VDITPDDQFAVTVTG  103 (331)
T ss_dssp             EEECTTSSEEEECCC
T ss_pred             eEECCCCCEEEEecC
Confidence            999999998884433

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=98.56  E-value=4e-07  Score=77.18  Aligned_cols=82  Identities=11%  Similarity=0.001  Sum_probs=67.7

Q ss_pred             EEE-EeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCC
Q 041215            9 GVH-HLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDG   87 (136)
Q Consensus         9 ~i~-~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~   87 (136)
                      .+| .+|..+++.. .+..|..     .+..++|+|+|+.|+.++.++.|++||+.++.....+..|...+.+++|+|++
T Consensus       359 ~l~~~~d~~~~~~~-~l~~~~~-----~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG  432 (1045)
T 1k32_A          359 DFLGIYDYRTGKAE-KFEENLG-----NVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNS  432 (1045)
T ss_dssp             EEEEEEETTTCCEE-ECCCCCC-----SEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTS
T ss_pred             ceEEEEECCCCCce-EecCCcc-----ceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCC
Confidence            456 6777655443 3335666     89999999999999999999999999999988777777888999999999999


Q ss_pred             CEEEEEEcc
Q 041215           88 SIFAYSVCY   96 (136)
Q Consensus        88 ~~l~s~~~d   96 (136)
                      ++|++++.+
T Consensus       433 ~~la~~~~~  441 (1045)
T 1k32_A          433 RFIAYGFPL  441 (1045)
T ss_dssp             CEEEEEEEE
T ss_pred             CeEEEEecC
Confidence            999887664

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=98.55  E-value=3.8e-07  Score=77.34  Aligned_cols=88  Identities=9%  Similarity=0.051  Sum_probs=71.3

Q ss_pred             ceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCC----------cEEEEeCCCcceeeecc
Q 041215            3 SIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDG----------AFNFWDKDSKQRLKAMS   72 (136)
Q Consensus         3 s~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg----------~v~vwd~~~~~~~~~~~   72 (136)
                      +.++.+.  +||..+++....+..|..     .+..++|+|+|++|+.++.++          .|++||+.++. +..+.
T Consensus       397 ~~~~~v~--~~d~~tg~~~~~~~~~~~-----~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~  468 (1045)
T 1k32_A          397 NDRFEIM--TVDLETGKPTVIERSREA-----MITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAAT  468 (1045)
T ss_dssp             ETTSEEE--EEETTTCCEEEEEECSSS-----CCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECS
T ss_pred             CCCCeEE--EEECCCCceEEeccCCCC-----CccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEee
Confidence            3445554  488888888777777888     899999999999888876644          89999999876 67777


Q ss_pred             cCCCceeEEEEccCCCEEEEEEcccc
Q 041215           73 RCGQPIPCSTFNTDGSIFAYSVCYDW   98 (136)
Q Consensus        73 ~h~~~v~~v~~sp~~~~l~s~~~dd~   98 (136)
                      .|...+.+++|+|+|+.+++++.++.
T Consensus       469 ~~~~~~~~~~~spdG~~l~~~s~~~~  494 (1045)
T 1k32_A          469 TENSHDYAPAFDADSKNLYYLSYRSL  494 (1045)
T ss_dssp             CSSSBEEEEEECTTSCEEEEEESCCC
T ss_pred             CCCcccCCceEcCCCCEEEEEecccC
Confidence            88888999999999999998876544

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=98.55  E-value=1.1e-07  Score=76.66  Aligned_cols=89  Identities=8%  Similarity=0.073  Sum_probs=65.7

Q ss_pred             ceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCC---------CcEEEEeCCCcce--eeec
Q 041215            3 SIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSD---------GAFNFWDKDSKQR--LKAM   71 (136)
Q Consensus         3 s~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~d---------g~v~vwd~~~~~~--~~~~   71 (136)
                      +.||+|.+  ||..+++....+..|..  ....|..++|+|+|++|+.++.+         +.+.+||+.++..  +...
T Consensus        34 ~~dg~i~~--~d~~~g~~~~~~~~~~~--~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~  109 (723)
T 1xfd_A           34 EQKGTVRL--WNVETNTSTVLIEGKKI--ESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPP  109 (723)
T ss_dssp             CSSSCEEE--BCGGGCCCEEEECTTTT--TTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCT
T ss_pred             eCCCCEEE--EECCCCcEEEEeccccc--cccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCC
Confidence            45776655  88888877777665543  00138999999999998888764         6788999998865  2222


Q ss_pred             ccCCCceeEEEEccCCCEEEEEEc
Q 041215           72 SRCGQPIPCSTFNTDGSIFAYSVC   95 (136)
Q Consensus        72 ~~h~~~v~~v~~sp~~~~l~s~~~   95 (136)
                      ..|...+.+++|||+|+.|+.++.
T Consensus       110 ~~~~~~~~~~~~SPdG~~la~~~~  133 (723)
T 1xfd_A          110 EVSNAKLQYAGWGPKGQQLIFIFE  133 (723)
T ss_dssp             TCCSCCCSBCCBCSSTTCEEEEET
T ss_pred             ccccccccccEECCCCCEEEEEEC
Confidence            334456899999999999998765

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=98.55  E-value=3.4e-07  Score=74.20  Aligned_cols=88  Identities=6%  Similarity=0.118  Sum_probs=65.3

Q ss_pred             eEEEEEeeCCCCcceeEEEeeeCC----------CC---------ccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcc-
Q 041215            7 RVGVHHLDDSQQSKNFTFKCHRDG----------SE---------IYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQ-   66 (136)
Q Consensus         7 ~v~i~~~d~~~~~~~~~l~~h~~~----------~~---------~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~-   66 (136)
                      ...|+.||..+++....+..+...          ..         ...+..++|+|+|+.|+.++. +.|.+||+.++. 
T Consensus        63 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~  141 (741)
T 2ecf_A           63 QLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGK  141 (741)
T ss_dssp             EEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSSEEEEEET-TEEEEEESSSCST
T ss_pred             ccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCc
Confidence            345566888887766665543320          00         013789999999998888876 899999998873 


Q ss_pred             -eeeecccCCCceeEEEEccCCCEEEEEEc
Q 041215           67 -RLKAMSRCGQPIPCSTFNTDGSIFAYSVC   95 (136)
Q Consensus        67 -~~~~~~~h~~~v~~v~~sp~~~~l~s~~~   95 (136)
                       ....+..|...+.+++|||+|++|+.++.
T Consensus       142 ~~~~~l~~~~~~~~~~~~SPDG~~la~~~~  171 (741)
T 2ecf_A          142 AAVRQLTHGEGFATDAKLSPKGGFVSFIRG  171 (741)
T ss_dssp             TSCCBCCCSSSCEEEEEECTTSSEEEEEET
T ss_pred             ceEEEcccCCcccccccCCCCCCEEEEEeC
Confidence             34567778888999999999999998764

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=98.53  E-value=9.7e-07  Score=64.22  Aligned_cols=85  Identities=6%  Similarity=-0.040  Sum_probs=60.4

Q ss_pred             ceeceEEEEEeeCCCC--cceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCC-CcEEEEeCC--Ccc--eeeecccCC
Q 041215            3 SIEGRVGVHHLDDSQQ--SKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSD-GAFNFWDKD--SKQ--RLKAMSRCG   75 (136)
Q Consensus         3 s~dG~v~i~~~d~~~~--~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~d-g~v~vwd~~--~~~--~~~~~~~h~   75 (136)
                      +.|+.|.+|.++. ++  ..... ..+..     .+.+++|+|++++|++++.+ +.|.+|++.  ++.  .+..+..+ 
T Consensus        12 ~~~~~v~~~~~~~-~~~~~~~~~-~~~~~-----~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-   83 (343)
T 1ri6_A           12 PESQQIHVWNLNH-EGALTLTQV-VDVPG-----QVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP-   83 (343)
T ss_dssp             GGGTEEEEEEECT-TSCEEEEEE-EECSS-----CCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS-
T ss_pred             CCCCeEEEEEECC-CCcEEEeee-EecCC-----CCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC-
Confidence            5688888865543 23  22233 34566     78899999999977777776 899999987  444  23344444 


Q ss_pred             CceeEEEEccCCCEEEEEEc
Q 041215           76 QPIPCSTFNTDGSIFAYSVC   95 (136)
Q Consensus        76 ~~v~~v~~sp~~~~l~s~~~   95 (136)
                      ..+.+++|+|+++++++++.
T Consensus        84 ~~~~~~~~s~dg~~l~~~~~  103 (343)
T 1ri6_A           84 GSLTHISTDHQGQFVFVGSY  103 (343)
T ss_dssp             SCCSEEEECTTSSEEEEEET
T ss_pred             CCCcEEEEcCCCCEEEEEec
Confidence            37899999999998776655

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.49  E-value=4e-07  Score=72.17  Aligned_cols=83  Identities=12%  Similarity=0.049  Sum_probs=67.3

Q ss_pred             EEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCC--cEEEEeCCCcceeeecccCCCceeEEE---
Q 041215            8 VGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDG--AFNFWDKDSKQRLKAMSRCGQPIPCST---   82 (136)
Q Consensus         8 v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg--~v~vwd~~~~~~~~~~~~h~~~v~~v~---   82 (136)
                      ..|+.+|..+++.. .+..|..     .+..++|+|||+.|++++.++  .|.+||+.++... .+..|...+..++   
T Consensus       175 ~~i~~~d~~~g~~~-~l~~~~~-----~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~  247 (582)
T 3o4h_A          175 VSLFTSNLSSGGLR-VFDSGEG-----SFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTA  247 (582)
T ss_dssp             EEEEEEETTTCCCE-EECCSSC-----EEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSE
T ss_pred             eEEEEEcCCCCCce-EeecCCC-----ccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhcc
Confidence            44677887766654 5667777     889999999999999888888  8999999988877 7777877787777   


Q ss_pred             -----EccCCCEEEEEEccc
Q 041215           83 -----FNTDGSIFAYSVCYD   97 (136)
Q Consensus        83 -----~sp~~~~l~s~~~dd   97 (136)
                           |+|+|.+++++..+.
T Consensus       248 ~~~~~~spdg~~~~~~~~~g  267 (582)
T 3o4h_A          248 ITWLGYLPDGRLAVVARREG  267 (582)
T ss_dssp             EEEEEECTTSCEEEEEEETT
T ss_pred             ccceeEcCCCcEEEEEEcCC
Confidence                 999998888776655

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=98.44  E-value=1.8e-06  Score=62.98  Aligned_cols=81  Identities=5%  Similarity=0.011  Sum_probs=60.0

Q ss_pred             EEEEeeCCCCcc-eeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCC---cEEEEeCCCcceeeecccCCCceeEEEEc
Q 041215            9 GVHHLDDSQQSK-NFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDG---AFNFWDKDSKQRLKAMSRCGQPIPCSTFN   84 (136)
Q Consensus         9 ~i~~~d~~~~~~-~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg---~v~vwd~~~~~~~~~~~~h~~~v~~v~~s   84 (136)
                      .++.||..+++. ...+..+..     +..+++|+|++++|++...++   .|.+||..++..+..+..+ ....+++|+
T Consensus        63 ~i~~~d~~~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~s  136 (331)
T 3u4y_A           63 TLVQIETQLEPPKVVAIQEGQS-----SMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAIS  136 (331)
T ss_dssp             EEEEEECSSSSCEEEEEEECSS-----CCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEEC
T ss_pred             eEEEEECCCCceeEEecccCCC-----CccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEEC
Confidence            345588887777 666666655     555599999999888555553   8999999998887776544 456999999


Q ss_pred             cCCCEEEEEEc
Q 041215           85 TDGSIFAYSVC   95 (136)
Q Consensus        85 p~~~~l~s~~~   95 (136)
                      |++++++++..
T Consensus       137 pdg~~l~~~~~  147 (331)
T 3u4y_A          137 PNGNGLILIDR  147 (331)
T ss_dssp             TTSSCEEEEEE
T ss_pred             CCCCEEEEEec
Confidence            99985555444

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=98.44  E-value=8.9e-07  Score=65.36  Aligned_cols=87  Identities=10%  Similarity=0.167  Sum_probs=63.8

Q ss_pred             eeceEEEEEeeCCCCccee-EEEeeeCCCCccceeEEEEeCCCCEEEEEcC---CCcEEEEeCCCcc--eeeecccCCCc
Q 041215            4 IEGRVGVHHLDDSQQSKNF-TFKCHRDGSEIYSVNSLNFHPIHHTFATAGS---DGAFNFWDKDSKQ--RLKAMSRCGQP   77 (136)
Q Consensus         4 ~dG~v~i~~~d~~~~~~~~-~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~---dg~v~vwd~~~~~--~~~~~~~h~~~   77 (136)
                      .++.+.+|.+|..+++... ....+..     .+..++|+|+++ |++++.   ++.|.+|++.++.  .+..+..+...
T Consensus        14 ~~~~i~v~~~d~~tg~~~~~~~~~~~~-----~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~   87 (347)
T 3hfq_A           14 TSQGIYQGTLDTTAKTLTNDGLLAATQ-----NPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTP   87 (347)
T ss_dssp             SCCEEEEEEEETTTTEEEEEEEEEECS-----CCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCC
T ss_pred             CCCCEEEEEEcCCCCeEEEeeeeeccC-----CcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCC
Confidence            4567888899987776543 3334556     778899999999 544443   5789999997664  34444556778


Q ss_pred             eeEEEEccCCCEEEEEEcc
Q 041215           78 IPCSTFNTDGSIFAYSVCY   96 (136)
Q Consensus        78 v~~v~~sp~~~~l~s~~~d   96 (136)
                      +..++|+|++++|++++..
T Consensus        88 p~~~a~spdg~~l~~~~~~  106 (347)
T 3hfq_A           88 PAYVAVDEARQLVYSANYH  106 (347)
T ss_dssp             CSEEEEETTTTEEEEEETT
T ss_pred             CEEEEECCCCCEEEEEeCC
Confidence            8999999999988877643

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=98.43  E-value=3.8e-06  Score=61.96  Aligned_cols=93  Identities=5%  Similarity=-0.000  Sum_probs=60.7

Q ss_pred             eeceEEEEEeeCCCCcce--eEEEeeeC-CCCccceeEEEEeCCCCEE-EEEcCCCcEEEEeCCC-c--ceeeecccCCC
Q 041215            4 IEGRVGVHHLDDSQQSKN--FTFKCHRD-GSEIYSVNSLNFHPIHHTF-ATAGSDGAFNFWDKDS-K--QRLKAMSRCGQ   76 (136)
Q Consensus         4 ~dG~v~i~~~d~~~~~~~--~~l~~h~~-~~~~~~v~~l~~~p~~~~l-~s~~~dg~v~vwd~~~-~--~~~~~~~~h~~   76 (136)
                      .++.+.+|.++..+++..  ..+..... ......+..++|+|+|++| ++...++.|.+|++.. +  ..+..+..+..
T Consensus       207 ~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~  286 (347)
T 3hfq_A          207 LSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGD  286 (347)
T ss_dssp             TTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSS
T ss_pred             CCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCC
Confidence            456677766665444322  22222211 0001247889999999866 5666688999999873 2  44556666667


Q ss_pred             ceeEEEEccCCCEEEEEEcc
Q 041215           77 PIPCSTFNTDGSIFAYSVCY   96 (136)
Q Consensus        77 ~v~~v~~sp~~~~l~s~~~d   96 (136)
                      .+..++|+|++++|+++..+
T Consensus       287 ~~~~~~~spdg~~l~v~~~~  306 (347)
T 3hfq_A          287 FPRDFDLDPTEAFVVVVNQN  306 (347)
T ss_dssp             CCCEEEECTTSSEEEEEETT
T ss_pred             CcCeEEECCCCCEEEEEEcC
Confidence            78999999999988877665

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=98.43  E-value=2.4e-06  Score=62.53  Aligned_cols=82  Identities=10%  Similarity=0.022  Sum_probs=65.1

Q ss_pred             EEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeeccc----CCCceeEEEEcc
Q 041215           10 VHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSR----CGQPIPCSTFNT   85 (136)
Q Consensus        10 i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~----h~~~v~~v~~sp   85 (136)
                      ++.||..+++....+..+..     .+.+++|+|++..|+.++.++.|.+||..++..+..+..    +...+..++|+|
T Consensus       166 i~~~d~~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~  240 (353)
T 3vgz_A          166 IWVVDGGNIKLKTAIQNTGK-----MSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDT  240 (353)
T ss_dssp             EEEEETTTTEEEEEECCCCT-----TCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEET
T ss_pred             EEEEcCCCCceEEEecCCCC-----ccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECC
Confidence            34488888877777664555     678999999999999999999999999999887766654    455678899999


Q ss_pred             CCCEEEEEEcc
Q 041215           86 DGSIFAYSVCY   96 (136)
Q Consensus        86 ~~~~l~s~~~d   96 (136)
                      ++..++.+..+
T Consensus       241 dg~~l~~~~~~  251 (353)
T 3vgz_A          241 ARQRAFITDSK  251 (353)
T ss_dssp             TTTEEEEEESS
T ss_pred             CCCEEEEEeCC
Confidence            99977666544

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=98.42  E-value=1.9e-06  Score=62.96  Aligned_cols=88  Identities=11%  Similarity=0.077  Sum_probs=64.8

Q ss_pred             ceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCE-EEEEcCCCcEEEEeCCCcceeeecccCC------
Q 041215            3 SIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHT-FATAGSDGAFNFWDKDSKQRLKAMSRCG------   75 (136)
Q Consensus         3 s~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~-l~s~~~dg~v~vwd~~~~~~~~~~~~h~------   75 (136)
                      +.++.|.+  ||..+++....+..+..    +.+..++|+|+++. +++...++.|.+||+.++..+..+....      
T Consensus        18 ~~~~~v~~--~d~~~~~~~~~~~~~~~----~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~   91 (349)
T 1jmx_B           18 NYPNNLHV--VDVASDTVYKSCVMPDK----FGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVG   91 (349)
T ss_dssp             ETTTEEEE--EETTTTEEEEEEECSSC----CSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEE
T ss_pred             CCCCeEEE--EECCCCcEEEEEecCCC----CCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccccccccc
Confidence            45666765  88888887777764431    14678999999975 5566678899999999988776664332      


Q ss_pred             CceeEEEEccCCCEEEEEEcc
Q 041215           76 QPIPCSTFNTDGSIFAYSVCY   96 (136)
Q Consensus        76 ~~v~~v~~sp~~~~l~s~~~d   96 (136)
                      ..+.+++|+|++++++++..+
T Consensus        92 ~~~~~~~~spdg~~l~~~~~~  112 (349)
T 1jmx_B           92 RSMYSFAISPDGKEVYATVNP  112 (349)
T ss_dssp             ECSSCEEECTTSSEEEEEEEE
T ss_pred             ccccceEECCCCCEEEEEccc
Confidence            237899999999998887743

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=98.40  E-value=2.5e-06  Score=62.49  Aligned_cols=91  Identities=10%  Similarity=0.052  Sum_probs=67.1

Q ss_pred             eceEEEEEeeCCCCcceeEEEeeeCC----CCccceeEEEEeCCCCEEEEEc--CCCcEEEEeCCCcceeeecccCCCce
Q 041215            5 EGRVGVHHLDDSQQSKNFTFKCHRDG----SEIYSVNSLNFHPIHHTFATAG--SDGAFNFWDKDSKQRLKAMSRCGQPI   78 (136)
Q Consensus         5 dG~v~i~~~d~~~~~~~~~l~~h~~~----~~~~~v~~l~~~p~~~~l~s~~--~dg~v~vwd~~~~~~~~~~~~h~~~v   78 (136)
                      ++.|.  .||..+++....+..+...    .....+.+++|+|++..++.++  .++.|.+||..++..+..+..+...+
T Consensus       110 ~~~v~--~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~  187 (353)
T 3vgz_A          110 NSAVT--AIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMS  187 (353)
T ss_dssp             TTEEE--EEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTC
T ss_pred             CCEEE--EEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCcc
Confidence            45554  4888888887777654330    0011268899999998666655  47889999999998888876566678


Q ss_pred             eEEEEccCCCEEEEEEccc
Q 041215           79 PCSTFNTDGSIFAYSVCYD   97 (136)
Q Consensus        79 ~~v~~sp~~~~l~s~~~dd   97 (136)
                      .+++|+|++..++++..++
T Consensus       188 ~~~~~s~dg~~l~~~~~~~  206 (353)
T 3vgz_A          188 TGLALDSEGKRLYTTNADG  206 (353)
T ss_dssp             CCCEEETTTTEEEEECTTS
T ss_pred             ceEEECCCCCEEEEEcCCC
Confidence            9999999999888776544

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=98.35  E-value=1.3e-05  Score=58.08  Aligned_cols=80  Identities=14%  Similarity=0.073  Sum_probs=61.2

Q ss_pred             EEEEeeCCCCcce-eEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCC
Q 041215            9 GVHHLDDSQQSKN-FTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDG   87 (136)
Q Consensus         9 ~i~~~d~~~~~~~-~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~   87 (136)
                      .++.+|..+++.. ..+..+..     .+.+++|+|++.+++.+  ++.|.+||+.+++.+..+..+ ..+.+++|+|++
T Consensus       220 ~v~~~d~~~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg  291 (337)
T 1pby_B          220 GLLTMDLETGEMAMREVRIMDV-----FYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDG  291 (337)
T ss_dssp             EEEEEETTTCCEEEEEEEECSS-----CEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTS
T ss_pred             ceEEEeCCCCCceEeecCCCCC-----ceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCC
Confidence            4566888877654 23344555     77899999999988888  689999999998877766543 567899999999


Q ss_pred             CEEEEEEcc
Q 041215           88 SIFAYSVCY   96 (136)
Q Consensus        88 ~~l~s~~~d   96 (136)
                      +++++++.+
T Consensus       292 ~~l~~~~~~  300 (337)
T 1pby_B          292 STVWLGGAL  300 (337)
T ss_dssp             CEEEEESBS
T ss_pred             CEEEEEcCC
Confidence            988877443

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=98.33  E-value=6e-07  Score=72.68  Aligned_cols=85  Identities=9%  Similarity=0.162  Sum_probs=62.4

Q ss_pred             eeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcC---------CCcEEEEeCCCccee--eecc
Q 041215            4 IEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGS---------DGAFNFWDKDSKQRL--KAMS   72 (136)
Q Consensus         4 ~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~---------dg~v~vwd~~~~~~~--~~~~   72 (136)
                      .||+|.+  ||..+++....+..+..  ....+.+++|+|||++|+.++.         ++.|++||+.++..+  ..+ 
T Consensus        34 ~d~~i~~--~~~~~g~~~~~~~~~~~--~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l-  108 (719)
T 1z68_A           34 ADNNIVL--YNIETGQSYTILSNRTM--KSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL-  108 (719)
T ss_dssp             TTSCEEE--EESSSCCEEEEECHHHH--HTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC-
T ss_pred             CCCCEEE--EEcCCCcEEEEEccccc--cccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec-
Confidence            3666654  88888877666654432  0013889999999998888876         688999999988753  222 


Q ss_pred             cCCCceeEEEEccCCCEEEEEEc
Q 041215           73 RCGQPIPCSTFNTDGSIFAYSVC   95 (136)
Q Consensus        73 ~h~~~v~~v~~sp~~~~l~s~~~   95 (136)
                        ...+.+++|||+|+.|+.+..
T Consensus       109 --~~~~~~~~~SPDG~~la~~~~  129 (719)
T 1z68_A          109 --PRPIQYLCWSPVGSKLAYVYQ  129 (719)
T ss_dssp             --CSSBCCEEECSSTTCEEEEET
T ss_pred             --CcccccceECCCCCEEEEEEC
Confidence              256899999999999998753

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=98.30  E-value=3.1e-06  Score=68.56  Aligned_cols=82  Identities=11%  Similarity=0.035  Sum_probs=60.5

Q ss_pred             EEEeeCCCCc--ceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCc----------
Q 041215           10 VHHLDDSQQS--KNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQP----------   77 (136)
Q Consensus        10 i~~~d~~~~~--~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~----------   77 (136)
                      +++||..++.  ....+..+..     .+..++|+|+|+.|+.++. +.|.+||+.++........+...          
T Consensus       131 i~~~d~~~~~~~~~~~l~~~~~-----~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~  204 (741)
T 2ecf_A          131 LYLYDLKQEGKAAVRQLTHGEG-----FATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVA  204 (741)
T ss_dssp             EEEEESSSCSTTSCCBCCCSSS-----CEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEECCCCCCSSEEESCCCHHH
T ss_pred             EEEEECCCCCcceEEEcccCCc-----ccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEeccCCccceeccccceee
Confidence            4557777662  3444556667     8999999999998888874 58999999987665444433332          


Q ss_pred             ------eeEEEEccCCCEEEEEEccc
Q 041215           78 ------IPCSTFNTDGSIFAYSVCYD   97 (136)
Q Consensus        78 ------v~~v~~sp~~~~l~s~~~dd   97 (136)
                            +.+++|||+|+.|++++.+.
T Consensus       205 ~~~~~~~~~~~~SpDg~~l~~~~~d~  230 (741)
T 2ecf_A          205 DEEMDRHTGYWWAPDDSAIAYARIDE  230 (741)
T ss_dssp             HHHSCCCCSEEECTTSSCEEEEEEEC
T ss_pred             eeccccccceEECCCCCEEEEEEEcC
Confidence                  47899999999999886654

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=98.25  E-value=8.3e-06  Score=65.01  Aligned_cols=86  Identities=12%  Similarity=0.071  Sum_probs=65.7

Q ss_pred             CceeceEEEEEeeC--CCCcceeEEEeeeCCCCccceeEEEEeC----CCCEEEEEcC-CCcEEEEeCCCcceeeecccC
Q 041215            2 GSIEGRVGVHHLDD--SQQSKNFTFKCHRDGSEIYSVNSLNFHP----IHHTFATAGS-DGAFNFWDKDSKQRLKAMSRC   74 (136)
Q Consensus         2 gs~dG~v~i~~~d~--~~~~~~~~l~~h~~~~~~~~v~~l~~~p----~~~~l~s~~~-dg~v~vwd~~~~~~~~~~~~h   74 (136)
                      ++.|++|.+  ||.  .+++...++. +..     .+..++|+|    ++++|++++. ++.|.+||..+++++..+..+
T Consensus       196 ~~~d~~V~v--~D~~~~t~~~~~~i~-~g~-----~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~  267 (543)
T 1nir_A          196 IGRDARIDM--IDLWAKEPTKVAEIK-IGI-----EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTR  267 (543)
T ss_dssp             EETTSEEEE--EETTSSSCEEEEEEE-CCS-----EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECC
T ss_pred             ECCCCeEEE--EECcCCCCcEEEEEe-cCC-----CcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeeccc
Confidence            456777877  776  6777777776 344     678999999    9998888875 799999999999888777542


Q ss_pred             -----------CCceeEEEEccCCCEEEEEEc
Q 041215           75 -----------GQPIPCSTFNTDGSIFAYSVC   95 (136)
Q Consensus        75 -----------~~~v~~v~~sp~~~~l~s~~~   95 (136)
                                 ...+..+.++|++..++.+..
T Consensus       268 g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~  299 (543)
T 1nir_A          268 GMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK  299 (543)
T ss_dssp             EECSSSCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred             CcccCccccccCCceEEEEECCCCCEEEEEEC
Confidence                       237889999998776554433

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=98.25  E-value=5.2e-06  Score=60.18  Aligned_cols=86  Identities=15%  Similarity=0.104  Sum_probs=61.2

Q ss_pred             eceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEc------------CCCcEEEEeCCCcceeeecc
Q 041215            5 EGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAG------------SDGAFNFWDKDSKQRLKAMS   72 (136)
Q Consensus         5 dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~------------~dg~v~vwd~~~~~~~~~~~   72 (136)
                      ++.|.+  ||..+++....+.......+...+..++|+|++..|+.++            .++.|.+||..++..+..+.
T Consensus        55 ~~~v~~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~  132 (337)
T 1pby_B           55 SESLVK--IDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE  132 (337)
T ss_dssp             TTEEEE--EETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE
T ss_pred             CCeEEE--EECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEe
Confidence            455554  8888777776665321000011567899999998888775            57899999999887776664


Q ss_pred             cCCCceeEEEEccCCCEEEEE
Q 041215           73 RCGQPIPCSTFNTDGSIFAYS   93 (136)
Q Consensus        73 ~h~~~v~~v~~sp~~~~l~s~   93 (136)
                      . ...+.+++|+|++++++++
T Consensus       133 ~-~~~~~~~~~s~dg~~l~~~  152 (337)
T 1pby_B          133 A-PRQITMLAWARDGSKLYGL  152 (337)
T ss_dssp             C-CSSCCCEEECTTSSCEEEE
T ss_pred             C-CCCcceeEECCCCCEEEEe
Confidence            4 4568899999999977776

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=98.24  E-value=9.1e-06  Score=59.00  Aligned_cols=61  Identities=5%  Similarity=-0.035  Sum_probs=45.7

Q ss_pred             ceeEEEEeCCCCEEE-EEcCCCcEEEEeCC--C--cceeeecccCCCceeEEEEccCCCEEEEEEcc
Q 041215           35 SVNSLNFHPIHHTFA-TAGSDGAFNFWDKD--S--KQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCY   96 (136)
Q Consensus        35 ~v~~l~~~p~~~~l~-s~~~dg~v~vwd~~--~--~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d   96 (136)
                      .+..++|+|++.+|+ +...++.|.+|++.  +  ...+..+..+.. +.+++|+|+++++++++.+
T Consensus       232 ~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~  297 (343)
T 1ri6_A          232 WAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQK  297 (343)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTT
T ss_pred             CccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCC
Confidence            456899999997665 66678999999998  2  234444544444 8999999999988877644

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=98.23  E-value=1.4e-06  Score=70.30  Aligned_cols=80  Identities=11%  Similarity=0.122  Sum_probs=57.4

Q ss_pred             EEeeCCCCcceeEEE---eeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCc----------
Q 041215           11 HHLDDSQQSKNFTFK---CHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQP----------   77 (136)
Q Consensus        11 ~~~d~~~~~~~~~l~---~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~----------   77 (136)
                      ++||..+++. ..+.   .|..     .+..++|+|+|+.|+.++. +.|++||+.++........+...          
T Consensus        94 ~~~d~~~~~~-~~l~~~~~~~~-----~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v  166 (723)
T 1xfd_A           94 VLSKIPHGDP-QSLDPPEVSNA-----KLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWL  166 (723)
T ss_dssp             EEEESSSCCC-EECCCTTCCSC-----CCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHH
T ss_pred             EEEECCCCce-EeccCCccccc-----cccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECccccee
Confidence            4477766654 2332   2333     4788999999998888876 78999999988766554443332          


Q ss_pred             --------eeEEEEccCCCEEEEEEccc
Q 041215           78 --------IPCSTFNTDGSIFAYSVCYD   97 (136)
Q Consensus        78 --------v~~v~~sp~~~~l~s~~~dd   97 (136)
                              +.+++|||+|+.|++++.++
T Consensus       167 ~~ee~~~~~~~~~~SpDg~~la~~~~~~  194 (723)
T 1xfd_A          167 YEEEILKTHIAHWWSPDGTRLAYAAIND  194 (723)
T ss_dssp             HHHTTSSSSEEEEECTTSSEEEEEEEEC
T ss_pred             EEEEeccCcceEEECCCCCEEEEEEECC
Confidence                    37899999999999887654

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=98.18  E-value=6.5e-06  Score=67.36  Aligned_cols=89  Identities=13%  Similarity=0.117  Sum_probs=65.0

Q ss_pred             eceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCC---------CcEEEEeCCCcceeeecccCC
Q 041215            5 EGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSD---------GAFNFWDKDSKQRLKAMSRCG   75 (136)
Q Consensus         5 dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~d---------g~v~vwd~~~~~~~~~~~~h~   75 (136)
                      ||+|.+  ||..+++....+..|...........++|+|||+.|+.++.+         +.+.+||+.++.. ..+..+.
T Consensus        35 ~~~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~-~~l~~~~  111 (740)
T 4a5s_A           35 ENNILV--FNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITEERIP  111 (740)
T ss_dssp             TTEEEE--EETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-CCSSCCC
T ss_pred             CCcEEE--EECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcE-EEcccCC
Confidence            666655  888888877777666531111122448999999988888765         5677999999875 4566777


Q ss_pred             CceeEEEEccCCCEEEEEEcc
Q 041215           76 QPIPCSTFNTDGSIFAYSVCY   96 (136)
Q Consensus        76 ~~v~~v~~sp~~~~l~s~~~d   96 (136)
                      ..+..++|||||+.||.+...
T Consensus       112 ~~~~~~~~SPdG~~la~~~~~  132 (740)
T 4a5s_A          112 NNTQWVTWSPVGHKLAYVWNN  132 (740)
T ss_dssp             TTEEEEEECSSTTCEEEEETT
T ss_pred             CcceeeEECCCCCEEEEEECC
Confidence            889999999999999987543

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.18  E-value=3.7e-06  Score=67.78  Aligned_cols=84  Identities=12%  Similarity=0.124  Sum_probs=61.1

Q ss_pred             eeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCC-----cceeeecccCCCc-
Q 041215            4 IEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDS-----KQRLKAMSRCGQP-   77 (136)
Q Consensus         4 ~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~-----~~~~~~~~~h~~~-   77 (136)
                      .++.+.+  ||..+++.. .+..+..     .+..++|+|+|+.|+.+ .++.|.+|++.+     +........+... 
T Consensus        99 ~~~~i~~--~d~~~~~~~-~l~~~~~-----~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~  169 (706)
T 2z3z_A           99 TQGGLVG--FDMLARKVT-YLFDTNE-----ETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETL  169 (706)
T ss_dssp             ETTEEEE--EETTTTEEE-EEECCTT-----CCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTE
T ss_pred             ECCEEEE--EECCCCceE-EccCCcc-----cccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCe
Confidence            3455554  777766543 3344566     78889999999988885 678999999988     7665544433332 


Q ss_pred             -------------eeEEEEccCCCEEEEEEcc
Q 041215           78 -------------IPCSTFNTDGSIFAYSVCY   96 (136)
Q Consensus        78 -------------v~~v~~sp~~~~l~s~~~d   96 (136)
                                   +.+++|+|++++|++++.|
T Consensus       170 ~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d  201 (706)
T 2z3z_A          170 VYGQAVHQREFGIEKGTFWSPKGSCLAFYRMD  201 (706)
T ss_dssp             EESSCCGGGCTTCCCSEEECTTSSEEEEEEEE
T ss_pred             EcccchhhhhcCCCceEEECCCCCEEEEEEEC
Confidence                         5899999999999988743

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.16  E-value=1e-05  Score=60.99  Aligned_cols=82  Identities=17%  Similarity=0.067  Sum_probs=63.8

Q ss_pred             eceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcC----------CCcEEEEeCCCcceeeecccC
Q 041215            5 EGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGS----------DGAFNFWDKDSKQRLKAMSRC   74 (136)
Q Consensus         5 dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~----------dg~v~vwd~~~~~~~~~~~~h   74 (136)
                      |+.|.+  ||..+++....+.....     +  .++|+|++++|+.++.          ++.|.+||..+++.+.++...
T Consensus        30 d~~v~v--~D~~t~~~~~~i~~g~~-----p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~  100 (361)
T 2oiz_A           30 ESRVHV--YDYTNGKFLGMVPTAFN-----G--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLP  100 (361)
T ss_dssp             GCEEEE--EETTTCCEEEEEECCEE-----E--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEEC
T ss_pred             cCeEEE--EECCCCeEEEEecCCCC-----C--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcC
Confidence            556655  88888888877776555     5  8999999998888762          567999999988887776542


Q ss_pred             ------CCceeEEEEccCCCEEEEEEc
Q 041215           75 ------GQPIPCSTFNTDGSIFAYSVC   95 (136)
Q Consensus        75 ------~~~v~~v~~sp~~~~l~s~~~   95 (136)
                            ......++|+|+|++|.++..
T Consensus       101 ~~~~~~g~~p~~i~~spdg~~l~v~n~  127 (361)
T 2oiz_A          101 PKRVQGLNYDGLFRQTTDGKFIVLQNA  127 (361)
T ss_dssp             TTBCCBCCCGGGEEECTTSSEEEEEEE
T ss_pred             ccccccCCCcceEEECCCCCEEEEECC
Confidence                  345788999999998887653

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=98.16  E-value=2.3e-05  Score=58.11  Aligned_cols=62  Identities=6%  Similarity=0.085  Sum_probs=46.2

Q ss_pred             ceeEEEEeCCCCEEEEEcC--CCcEEEEeCC--Ccc--eeeecccCCCceeEEEEccCCCEEEEEEccc
Q 041215           35 SVNSLNFHPIHHTFATAGS--DGAFNFWDKD--SKQ--RLKAMSRCGQPIPCSTFNTDGSIFAYSVCYD   97 (136)
Q Consensus        35 ~v~~l~~~p~~~~l~s~~~--dg~v~vwd~~--~~~--~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd   97 (136)
                      .+..++|+|+|++|+.++.  ++.|.+|++.  ++.  .+..+.. ...+.+++|+|++++|+++..++
T Consensus       260 ~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~  327 (361)
T 3scy_A          260 GSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDT  327 (361)
T ss_dssp             CEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTT
T ss_pred             CcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCC
Confidence            4579999999998766555  4889999985  344  3344444 56788999999999888877543

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.14  E-value=1.7e-05  Score=59.76  Aligned_cols=73  Identities=12%  Similarity=0.204  Sum_probs=61.1

Q ss_pred             EEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCc--ceeeecccCCCceeEEEEcc
Q 041215            8 VGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSK--QRLKAMSRCGQPIPCSTFNT   85 (136)
Q Consensus         8 v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~--~~~~~~~~h~~~v~~v~~sp   85 (136)
                      ..++.||..+.+.+.++..+       .+.+++|+|++++|++++. +.|.+||..++  +.+.++..+....+.++++|
T Consensus       286 ~~v~viD~~t~~~v~~i~~~-------~p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p  357 (361)
T 2oiz_A          286 AEIWVMDTKTKQRVARIPGR-------DALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHP  357 (361)
T ss_dssp             SEEEEEETTTTEEEEEEECT-------TCCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECC
T ss_pred             ceEEEEECCCCcEEEEEecC-------CeeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecC
Confidence            45566999888888777643       2689999999999998887 99999999999  88888767778889999999


Q ss_pred             CCC
Q 041215           86 DGS   88 (136)
Q Consensus        86 ~~~   88 (136)
                      +|.
T Consensus       358 ~G~  360 (361)
T 2oiz_A          358 VGG  360 (361)
T ss_dssp             CSC
T ss_pred             CCC
Confidence            985

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.12  E-value=1.6e-05  Score=61.32  Aligned_cols=81  Identities=15%  Similarity=0.006  Sum_probs=61.1

Q ss_pred             eeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEE
Q 041215            4 IEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTF   83 (136)
Q Consensus         4 ~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~   83 (136)
                      .+|.|.+  ||..+.........|..     ++..+.+.+.  .++.+..||.|.+||+.++....    +...|.|++|
T Consensus       104 ~~~~l~v--~dv~sl~~~~~~~~~~~-----~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~W  170 (388)
T 1xip_A          104 TRNALYS--LDLEELSEFRTVTSFEK-----PVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDV  170 (388)
T ss_dssp             ESSEEEE--EESSSTTCEEEEEECSS-----CEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEE
T ss_pred             cCCcEEE--EEchhhhccCccceeec-----ceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEE
Confidence            5676666  88776666667777877     8888777543  38888999999999999876543    4468999999


Q ss_pred             ccCCCEEEEEEccccc
Q 041215           84 NTDGSIFAYSVCYDWS   99 (136)
Q Consensus        84 sp~~~~l~s~~~dd~~   99 (136)
                      ||.|  ++.|..|+-.
T Consensus       171 SpkG--~~vg~~dg~i  184 (388)
T 1xip_A          171 TNSQ--LAVLLKDRSF  184 (388)
T ss_dssp             CSSE--EEEEETTSCE
T ss_pred             cCCc--eEEEEcCCcE
Confidence            9999  4556666543

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=98.10  E-value=1.1e-05  Score=65.15  Aligned_cols=82  Identities=12%  Similarity=0.118  Sum_probs=56.9

Q ss_pred             eceEEEEEeeCCCCcce--eEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeec-ccCCCce---
Q 041215            5 EGRVGVHHLDDSQQSKN--FTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAM-SRCGQPI---   78 (136)
Q Consensus         5 dG~v~i~~~d~~~~~~~--~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~-~~h~~~v---   78 (136)
                      ++.+.  +||..+++..  ..+   ..     .+..++|+|+|+.|+.+. ++.|++|++.++...... .++...|   
T Consensus        89 ~~~i~--~~d~~~g~~~~~~~l---~~-----~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g  157 (719)
T 1z68_A           89 TATYY--IYDLSNGEFVRGNEL---PR-----PIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNG  157 (719)
T ss_dssp             EEEEE--EEETTTTEECCSSCC---CS-----SBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEES
T ss_pred             ceEEE--EEECCCCccccceec---Cc-----ccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcc
Confidence            45554  4777666542  111   24     678899999999888875 679999999887654322 2222222   


Q ss_pred             --------------eEEEEccCCCEEEEEEccc
Q 041215           79 --------------PCSTFNTDGSIFAYSVCYD   97 (136)
Q Consensus        79 --------------~~v~~sp~~~~l~s~~~dd   97 (136)
                                    .+++|||||+.|++++.++
T Consensus       158 ~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~  190 (719)
T 1z68_A          158 IPDWVYEEEMLATKYALWWSPNGKFLAYAEFND  190 (719)
T ss_dssp             SCCHHHHHHTTCSSCCEEECTTSSEEEEEEEEC
T ss_pred             cccceeeeecccCcccEEECCCCCEEEEEEECC
Confidence                          5899999999999987664

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.06  E-value=3.6e-05  Score=62.03  Aligned_cols=90  Identities=13%  Similarity=0.181  Sum_probs=62.9

Q ss_pred             EEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeC--CCCEEEEEcCCCcEEEEeCC-CcceeeecccCCCceeE-EEE
Q 041215            8 VGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHP--IHHTFATAGSDGAFNFWDKD-SKQRLKAMSRCGQPIPC-STF   83 (136)
Q Consensus         8 v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p--~~~~l~s~~~dg~v~vwd~~-~~~~~~~~~~h~~~v~~-v~~   83 (136)
                      ..++.||..+++....+...........+..++|+|  ++.++++++.++.+++|++. ++..+..+..+...+.+ ++|
T Consensus       284 ~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~  363 (706)
T 2z3z_A          284 CKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGF  363 (706)
T ss_dssp             EEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEE
T ss_pred             eEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEE
Confidence            455668888774433333222201111246789999  99999999999999999876 56667788788777876 799


Q ss_pred             ccCCCEEEEEEccc
Q 041215           84 NTDGSIFAYSVCYD   97 (136)
Q Consensus        84 sp~~~~l~s~~~dd   97 (136)
                      +|+++.|+.++.++
T Consensus       364 spdg~~l~~~~~~~  377 (706)
T 2z3z_A          364 DPKGTRLYFESTEA  377 (706)
T ss_dssp             CTTSSEEEEEESSS
T ss_pred             cCCCCEEEEEecCC
Confidence            99999877665553

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.05  E-value=4.6e-05  Score=55.57  Aligned_cols=84  Identities=10%  Similarity=0.128  Sum_probs=68.5

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeee-CCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccC-CCcee
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHR-DGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRC-GQPIP   79 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~-~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h-~~~v~   79 (136)
                      ++.|+.|.+  ||..+++.+..+..+. .     .+.++.+.|+|++|++  .++.|..||. +++.+.++..+ ...+.
T Consensus        11 ~~~~~~v~~--~d~~tG~~~w~~~~~~~~-----~~~~~~~~pdG~ilvs--~~~~V~~~d~-~G~~~W~~~~~~~~~~~   80 (276)
T 3no2_A           11 GSGWNKIAI--INKDTKEIVWEYPLEKGW-----ECNSVAATKAGEILFS--YSKGAKMITR-DGRELWNIAAPAGCEMQ   80 (276)
T ss_dssp             CTTCSEEEE--EETTTTEEEEEEECCTTC-----CCCEEEECTTSCEEEE--CBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred             eCCCCEEEE--EECCCCeEEEEeCCCccC-----CCcCeEECCCCCEEEe--CCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence            566777766  8988999999988765 4     6789999999998883  4677999998 78888888765 35788


Q ss_pred             EEEEccCCCEEEEEEc
Q 041215           80 CSTFNTDGSIFAYSVC   95 (136)
Q Consensus        80 ~v~~sp~~~~l~s~~~   95 (136)
                      ++.+.++|.++++.+.
T Consensus        81 ~~~~~~dG~~lv~~~~   96 (276)
T 3no2_A           81 TARILPDGNALVAWCG   96 (276)
T ss_dssp             EEEECTTSCEEEEEES
T ss_pred             ccEECCCCCEEEEecC
Confidence            9999999999997665

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=98.04  E-value=8.5e-05  Score=55.50  Aligned_cols=86  Identities=10%  Similarity=0.090  Sum_probs=58.1

Q ss_pred             eeceEEEEEeeCCCCcceeEEEe----eeCCCCccceeEEEEeCCCCEEEEEcC-CCcEEEEeCC-Cccee--eecc--c
Q 041215            4 IEGRVGVHHLDDSQQSKNFTFKC----HRDGSEIYSVNSLNFHPIHHTFATAGS-DGAFNFWDKD-SKQRL--KAMS--R   73 (136)
Q Consensus         4 ~dG~v~i~~~d~~~~~~~~~l~~----h~~~~~~~~v~~l~~~p~~~~l~s~~~-dg~v~vwd~~-~~~~~--~~~~--~   73 (136)
                      .+|++.+|.++. .+.....+..    +..     .+.+++|+|+|++|++++. ++.|.+|++. ++...  ..+.  .
T Consensus       117 ~~g~v~v~~~~~-~g~~~~~~~~~~~~~~~-----~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~  190 (365)
T 1jof_A          117 FAGYGNVFSVSE-TGKLEKNVQNYEYQENT-----GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD  190 (365)
T ss_dssp             SCCEEEEEEECT-TCCEEEEEEEEECCTTC-----CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS
T ss_pred             CCceEEEEccCC-CCcCcceEeeEEeCCCC-----cceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCC
Confidence            467777754432 2443333332    234     6889999999987776654 5789999998 66542  2332  2


Q ss_pred             CCCceeEEEEccCCCEEEEEEc
Q 041215           74 CGQPIPCSTFNTDGSIFAYSVC   95 (136)
Q Consensus        74 h~~~v~~v~~sp~~~~l~s~~~   95 (136)
                      |...+..++|+|++++++++..
T Consensus       191 ~g~~p~~~~~spdg~~l~v~~~  212 (365)
T 1jof_A          191 PGDHPRWVAMHPTGNYLYALME  212 (365)
T ss_dssp             TTCCEEEEEECTTSSEEEEEET
T ss_pred             CCCCCCEeEECCCCCEEEEEEC
Confidence            4567899999999998877654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.00  E-value=6.7e-06  Score=65.08  Aligned_cols=84  Identities=10%  Similarity=0.071  Sum_probs=64.9

Q ss_pred             ceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEE--------EeCCCCEEEEEcCCCcEEEEeCCCcceeeecccC
Q 041215            3 SIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLN--------FHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRC   74 (136)
Q Consensus         3 s~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~--------~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h   74 (136)
                      +.+|...|+.||..+++.. .+..|..     .+..++        |+|+|.++++++.++.+++|++  +....   ..
T Consensus       213 ~~~~~~~i~~~d~~~~~~~-~~~~~~~-----~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~  281 (582)
T 3o4h_A          213 ETAREARLVTVDPRDGSVE-DLELPSK-----DFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---AP  281 (582)
T ss_dssp             ECSSCEEEEEECTTTCCEE-ECCCSCS-----HHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CC
T ss_pred             cCCCeeEEEEEcCCCCcEE-EccCCCc-----ChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cC
Confidence            3456556777998887776 6666766     666666        9999999999999999999999  65543   33


Q ss_pred             CCceeEEEEccCCCEEEEEEcccc
Q 041215           75 GQPIPCSTFNTDGSIFAYSVCYDW   98 (136)
Q Consensus        75 ~~~v~~v~~sp~~~~l~s~~~dd~   98 (136)
                      .+.+.+++|+ +++++++++.+..
T Consensus       282 ~~~v~~~~~s-dg~~l~~~s~~~~  304 (582)
T 3o4h_A          282 QGNHGRVVLW-RGKLVTSHTSLST  304 (582)
T ss_dssp             SSEEEEEEEE-TTEEEEEEEETTE
T ss_pred             CCceEEEEec-CCEEEEEEcCCCC
Confidence            4678999999 9998888777653

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=98.00  E-value=1.3e-05  Score=58.49  Aligned_cols=84  Identities=12%  Similarity=0.117  Sum_probs=56.2

Q ss_pred             eceEEEEEeeCCCCcceeEEEeeeC-CCCccceeEEEEeCCCCEEEEEcCC------------CcEEEEeCCCccee---
Q 041215            5 EGRVGVHHLDDSQQSKNFTFKCHRD-GSEIYSVNSLNFHPIHHTFATAGSD------------GAFNFWDKDSKQRL---   68 (136)
Q Consensus         5 dG~v~i~~~d~~~~~~~~~l~~h~~-~~~~~~v~~l~~~p~~~~l~s~~~d------------g~v~vwd~~~~~~~---   68 (136)
                      ++.|.+  ||..+++....+..... ......+..++|+|++++|++++.+            +.|.+||+.++...   
T Consensus        64 ~~~i~~--~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~  141 (349)
T 1jmx_B           64 YGDIYG--IDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV  141 (349)
T ss_dssp             TTEEEE--EETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCS
T ss_pred             CCcEEE--EeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccccee
Confidence            455544  88877777666653211 0001147899999999988888765            89999999875433   


Q ss_pred             eecccCCCceeEEEEccCCCEEE
Q 041215           69 KAMSRCGQPIPCSTFNTDGSIFA   91 (136)
Q Consensus        69 ~~~~~h~~~v~~v~~sp~~~~l~   91 (136)
                      ..+. +...+.+++|+|++++++
T Consensus       142 ~~~~-~~~~~~~~~~s~dg~l~~  163 (349)
T 1jmx_B          142 RTFP-MPRQVYLMRAADDGSLYV  163 (349)
T ss_dssp             EEEE-CCSSCCCEEECTTSCEEE
T ss_pred             eecc-CCCcccceeECCCCcEEE
Confidence            2332 334688999999999444

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=97.99  E-value=2.9e-05  Score=62.10  Aligned_cols=87  Identities=10%  Similarity=0.025  Sum_probs=60.5

Q ss_pred             ceEEEEEeeCCC------CcceeEEE-eeeCCCCccceeEEEEeCCCCEEEEEcCC--------CcEEEEeCC-Cc---c
Q 041215            6 GRVGVHHLDDSQ------QSKNFTFK-CHRDGSEIYSVNSLNFHPIHHTFATAGSD--------GAFNFWDKD-SK---Q   66 (136)
Q Consensus         6 G~v~i~~~d~~~------~~~~~~l~-~h~~~~~~~~v~~l~~~p~~~~l~s~~~d--------g~v~vwd~~-~~---~   66 (136)
                      +...|+.+|..+      +. ...+. .+..     .+..++|+|||+.|+.++.+        ..|.+||+. ++   .
T Consensus       159 ~~~~i~~~~~~~~~~~~~~~-~~~l~~~~~~-----~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~  232 (662)
T 3azo_A          159 VRRFLAAVPLDGSAAADRSA-VRELSDDAHR-----FVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFAD  232 (662)
T ss_dssp             EEEEEEEEETTSTTTTCGGG-SEESSCSCSS-----EECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEE
T ss_pred             ceeEEEEEECCCCccccCCc-eeEEEecCCC-----cccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccc
Confidence            345667788766      33 33444 4445     67889999999988877644        369999998 56   3


Q ss_pred             eeeecccCCCceeEEEEccCCCEEEEEEcccc
Q 041215           67 RLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDW   98 (136)
Q Consensus        67 ~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd~   98 (136)
                      .......+...+..++|+|+|++++++..+++
T Consensus       233 ~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~  264 (662)
T 3azo_A          233 TRTLLGGPEEAIAQAEWAPDGSLIVATDRTGW  264 (662)
T ss_dssp             EEEEEEETTBCEEEEEECTTSCEEEEECTTSS
T ss_pred             cEEeCCCCCceEcceEECCCCeEEEEECCCCC
Confidence            33334445788999999999997776655543

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=97.98  E-value=2.2e-05  Score=60.55  Aligned_cols=78  Identities=13%  Similarity=0.031  Sum_probs=59.8

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcce--eeec------c-
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQR--LKAM------S-   72 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~--~~~~------~-   72 (136)
                      ++.||.+.+  ||...+....    +..     .|.|++|+|+|  ++.+..||.+++|+...+.+  ..++      . 
T Consensus       142 ~~~dG~L~v--~dl~~~~~~~----~~~-----~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~  208 (388)
T 1xip_A          142 LNSVNDLSA--LDLRTKSTKQ----LAQ-----NVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEE  208 (388)
T ss_dssp             EETTSEEEE--EETTTCCEEE----EEE-----SEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHT
T ss_pred             EECCCCEEE--EEccCCcccc----ccC-----CceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCccccc
Confidence            467888887  6666554432    455     89999999999  67788899999998877664  4445      2 


Q ss_pred             --cCCCceeEEEEccCCCEEEE
Q 041215           73 --RCGQPIPCSTFNTDGSIFAY   92 (136)
Q Consensus        73 --~h~~~v~~v~~sp~~~~l~s   92 (136)
                        +|...|.+|+|.+++.++++
T Consensus       209 ~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          209 LPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             SCTTTSEEEEEEESSSSEEEEE
T ss_pred             ccCCCeeEEEEEEecCCeEEEE
Confidence              36789999999999988775

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=97.95  E-value=0.00011  Score=59.08  Aligned_cols=84  Identities=11%  Similarity=0.086  Sum_probs=65.8

Q ss_pred             eeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCC--CcceeeecccCCCceeEE
Q 041215            4 IEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKD--SKQRLKAMSRCGQPIPCS   81 (136)
Q Consensus         4 ~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~--~~~~~~~~~~h~~~v~~v   81 (136)
                      .++.|.+  +|..+++.+..+.. ..     .+..+.|+|++++++.++.++.|.+||+.  ++..+.++... .....+
T Consensus       175 ~~~~V~v--iD~~t~~v~~~i~~-g~-----~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~P~~i  245 (567)
T 1qks_A          175 DAGQIAL--IDGSTYEIKTVLDT-GY-----AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SEARSI  245 (567)
T ss_dssp             TTTEEEE--EETTTCCEEEEEEC-SS-----CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-SEEEEE
T ss_pred             CCCeEEE--EECCCCeEEEEEeC-CC-----CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-CCCcee
Confidence            3566655  89988888888763 33     56799999999999999999999999995  77777777554 346799


Q ss_pred             EEc----cCCCEEEEEEcc
Q 041215           82 TFN----TDGSIFAYSVCY   96 (136)
Q Consensus        82 ~~s----p~~~~l~s~~~d   96 (136)
                      +|+    |+|++++++..+
T Consensus       246 a~s~~~~pDGk~l~v~n~~  264 (567)
T 1qks_A          246 ETSKMEGWEDKYAIAGAYW  264 (567)
T ss_dssp             EECCSTTCTTTEEEEEEEE
T ss_pred             EEccccCCCCCEEEEEEcc
Confidence            999    699988877554

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=97.93  E-value=0.00018  Score=53.24  Aligned_cols=86  Identities=8%  Similarity=-0.066  Sum_probs=60.3

Q ss_pred             ceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCC----CcEEEEeCCC--cce--eeecccC
Q 041215            3 SIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSD----GAFNFWDKDS--KQR--LKAMSRC   74 (136)
Q Consensus         3 s~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~d----g~v~vwd~~~--~~~--~~~~~~h   74 (136)
                      +.++.|.+|.+|..+++.......+..     .+..++|+|++++|++++.+    +.|.+|++..  +..  +.....+
T Consensus        24 ~~~~~i~~~~~d~~~g~~~~~~~~~~~-----~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~   98 (361)
T 3scy_A           24 GNSKGIYTFRFNEETGESLPLSDAEVA-----NPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTM   98 (361)
T ss_dssp             SSCCEEEEEEEETTTCCEEEEEEEECS-----CCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECS
T ss_pred             CCCCCEEEEEEeCCCCCEEEeecccCC-----CCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccC
Confidence            346778888888877765433322556     78889999999988888875    7899998765  432  3334445


Q ss_pred             CCceeEEEEccCCCEEEEEEc
Q 041215           75 GQPIPCSTFNTDGSIFAYSVC   95 (136)
Q Consensus        75 ~~~v~~v~~sp~~~~l~s~~~   95 (136)
                      ......+++  ++++++++..
T Consensus        99 ~~~p~~~~~--dg~~l~~~~~  117 (361)
T 3scy_A           99 GADPCYLTT--NGKNIVTANY  117 (361)
T ss_dssp             SSCEEEEEE--CSSEEEEEET
T ss_pred             CCCcEEEEE--CCCEEEEEEC
Confidence            566777888  8887776654

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=97.92  E-value=2.1e-05  Score=58.52  Aligned_cols=79  Identities=13%  Similarity=0.100  Sum_probs=59.8

Q ss_pred             eeCCCCcceeEEEeeeCCCCccceeE-----EEEeCCCCEEEEEcC-CC--cEEEEeCCCcceeeecccCCCceeEEEEc
Q 041215           13 LDDSQQSKNFTFKCHRDGSEIYSVNS-----LNFHPIHHTFATAGS-DG--AFNFWDKDSKQRLKAMSRCGQPIPCSTFN   84 (136)
Q Consensus        13 ~d~~~~~~~~~l~~h~~~~~~~~v~~-----l~~~p~~~~l~s~~~-dg--~v~vwd~~~~~~~~~~~~h~~~v~~v~~s   84 (136)
                      .|..++.....+..+..     ....     .+|+|+|+.|+..+. ++  .|.+||+.++........+...+..++|+
T Consensus        15 ~~~~~g~~~~~lt~~~~-----~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~s   89 (388)
T 3pe7_A           15 QDASTGAQVTRLTPPDV-----TCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLS   89 (388)
T ss_dssp             ECTTTCCEEEECSCTTS-----CEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEEC
T ss_pred             ecCCCCcceEEecCCcc-----cccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEc
Confidence            56677777777776665     4444     789999987777776 66  38888998887766666666666678899


Q ss_pred             cCCCEEEEEEcc
Q 041215           85 TDGSIFAYSVCY   96 (136)
Q Consensus        85 p~~~~l~s~~~d   96 (136)
                      |+++.|+.+..+
T Consensus        90 pdg~~l~~~~~~  101 (388)
T 3pe7_A           90 PDDDALFYVKDG  101 (388)
T ss_dssp             TTSSEEEEEETT
T ss_pred             CCCCEEEEEeCC
Confidence            999999987754

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=97.88  E-value=0.00014  Score=53.33  Aligned_cols=78  Identities=9%  Similarity=0.026  Sum_probs=53.9

Q ss_pred             eEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCC---C--cEEEEeCCCcceeeecccCCCceeEE
Q 041215            7 RVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSD---G--AFNFWDKDSKQRLKAMSRCGQPIPCS   81 (136)
Q Consensus         7 ~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~d---g--~v~vwd~~~~~~~~~~~~h~~~v~~v   81 (136)
                      .-.||.+|..+++.. .+    .     .+..++|+|+|+.|+..+.+   +  .|.+|++.++........+ . +..+
T Consensus        42 ~~~l~~~d~~~~~~~-~l----~-----~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~  109 (347)
T 2gop_A           42 ENTIVIENLKNNARR-FI----E-----NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSL  109 (347)
T ss_dssp             EEEEEEEETTTCCEE-EE----E-----SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEE
T ss_pred             cceEEEEeCCCCceE-Ec----c-----cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccce
Confidence            344566777665532 23    4     77889999999887776643   3  3777888877654433333 4 9999


Q ss_pred             EEccCCCEEEEEEcc
Q 041215           82 TFNTDGSIFAYSVCY   96 (136)
Q Consensus        82 ~~sp~~~~l~s~~~d   96 (136)
                      +|+|+++.|+.++.+
T Consensus       110 ~wspdg~~l~~~~~~  124 (347)
T 2gop_A          110 EWNEDSRKLLIVGFK  124 (347)
T ss_dssp             EECTTSSEEEEEEEC
T ss_pred             eECCCCCEEEEEEcc
Confidence            999999988877643

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=97.85  E-value=0.00016  Score=52.73  Aligned_cols=71  Identities=13%  Similarity=0.128  Sum_probs=54.8

Q ss_pred             eeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEcc
Q 041215           21 NFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCY   96 (136)
Q Consensus        21 ~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d   96 (136)
                      ...+..+..     .+.+++|+|++.+++++..++.|.+||..++........+...+.++++++++.++++...+
T Consensus        37 ~~~~~~~~~-----~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~  107 (333)
T 2dg1_A           37 WLEISKKGL-----QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGD  107 (333)
T ss_dssp             EEEEESSCC-----CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTT
T ss_pred             eEEEeccCc-----cccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCC
Confidence            344444545     67899999999988888888999999998876554443556789999999999988865443

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=97.84  E-value=6.7e-05  Score=61.37  Aligned_cols=83  Identities=12%  Similarity=0.117  Sum_probs=58.4

Q ss_pred             EEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeee-cccCCCce---------
Q 041215            9 GVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKA-MSRCGQPI---------   78 (136)
Q Consensus         9 ~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~-~~~h~~~v---------   78 (136)
                      .+++||..+++.. .+..+..     .+...+|+|+|+.|+.+ .++.|++|++.++..... ..++...+         
T Consensus        93 ~~~~~d~~~~~~~-~l~~~~~-----~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~  165 (740)
T 4a5s_A           93 SYDIYDLNKRQLI-TEERIPN-----NTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVY  165 (740)
T ss_dssp             EEEEEETTTTEEC-CSSCCCT-----TEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHH
T ss_pred             EEEEEECCCCcEE-EcccCCC-----cceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccc
Confidence            4456888776543 3455666     88999999999988877 467899999988765432 22222222         


Q ss_pred             --------eEEEEccCCCEEEEEEcccc
Q 041215           79 --------PCSTFNTDGSIFAYSVCYDW   98 (136)
Q Consensus        79 --------~~v~~sp~~~~l~s~~~dd~   98 (136)
                              ..+.|||||+.||.++.|+-
T Consensus       166 ~ee~~~~~~~~~wSpDg~~la~~~~d~~  193 (740)
T 4a5s_A          166 EEEVFSAYSALWWSPNGTFLAYAQFNDT  193 (740)
T ss_dssp             HHHTSSSSBCEEECTTSSEEEEEEEECT
T ss_pred             cchhcCCCcceEECCCCCEEEEEEEccc
Confidence                    35899999999998876543

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=97.84  E-value=5.1e-05  Score=56.37  Aligned_cols=84  Identities=12%  Similarity=-0.036  Sum_probs=60.9

Q ss_pred             eceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEE--
Q 041215            5 EGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCST--   82 (136)
Q Consensus         5 dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~--   82 (136)
                      +|...||.+|..+++.......+..     .+..+.|+|+++.|+.++.++.|.+||+.++.....+..+...+....  
T Consensus        57 ~g~~~l~~~d~~~g~~~~lt~~~~~-----~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~  131 (388)
T 3pe7_A           57 DGPWNYYLLDLNTQVATQLTEGRGD-----NTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWV  131 (388)
T ss_dssp             TSSCEEEEEETTTCEEEECCCSSCB-----CSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEE
T ss_pred             CCCceEEEEeCCCCceEEeeeCCCC-----CccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhccccccee
Confidence            5666677788877666555444444     445678999999999999888999999999877655555555554444  


Q ss_pred             EccCCCEEEEE
Q 041215           83 FNTDGSIFAYS   93 (136)
Q Consensus        83 ~sp~~~~l~s~   93 (136)
                      +++++.+++..
T Consensus       132 ~~~dg~~l~~~  142 (388)
T 3pe7_A          132 ANSDCTKLVGI  142 (388)
T ss_dssp             ECTTSSEEEEE
T ss_pred             ECCCCCeeccc
Confidence            48999988743

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=97.75  E-value=0.00046  Score=50.32  Aligned_cols=79  Identities=11%  Similarity=0.180  Sum_probs=56.3

Q ss_pred             EEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCC----CcEEEEeCCCcceeeecc--cCCCceeEEEEc
Q 041215           11 HHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSD----GAFNFWDKDSKQRLKAMS--RCGQPIPCSTFN   84 (136)
Q Consensus        11 ~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~d----g~v~vwd~~~~~~~~~~~--~h~~~v~~v~~s   84 (136)
                      +.||..+++....+..+..     .+.+++++|++.++++...+    +.|.+||..++.....+.  .+...+++++++
T Consensus        69 ~~~d~~~~~~~~~~~~~~~-----~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d  143 (333)
T 2dg1_A           69 FKINPETKEIKRPFVSHKA-----NPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFD  143 (333)
T ss_dssp             EEECTTTCCEEEEEECSSS-----SEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEEC
T ss_pred             EEEeCCCCcEEEEeeCCCC-----CcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEEC
Confidence            4467666554443333445     78999999999988887766    679999988765432222  244678999999


Q ss_pred             cCCCEEEEEE
Q 041215           85 TDGSIFAYSV   94 (136)
Q Consensus        85 p~~~~l~s~~   94 (136)
                      |++.++++..
T Consensus       144 ~~g~l~v~~~  153 (333)
T 2dg1_A          144 SKGGFYFTDF  153 (333)
T ss_dssp             TTSCEEEEEC
T ss_pred             CCCCEEEEec
Confidence            9999888654

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=97.74  E-value=0.00021  Score=53.40  Aligned_cols=61  Identities=3%  Similarity=-0.168  Sum_probs=44.7

Q ss_pred             eeEEE-EeCCCCEEEEEcCC-C-----cEEEEeCC-Ccceee---ecccCCCceeEEEEcc---CCCEEEEEEcc
Q 041215           36 VNSLN-FHPIHHTFATAGSD-G-----AFNFWDKD-SKQRLK---AMSRCGQPIPCSTFNT---DGSIFAYSVCY   96 (136)
Q Consensus        36 v~~l~-~~p~~~~l~s~~~d-g-----~v~vwd~~-~~~~~~---~~~~h~~~v~~v~~sp---~~~~l~s~~~d   96 (136)
                      +..++ |+|+|++|++++.+ .     .|.+|++. ++....   ....+...+..++|+|   ++++|+++..+
T Consensus       256 ~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~  330 (365)
T 1jof_A          256 RADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQ  330 (365)
T ss_dssp             EEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSS
T ss_pred             cccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcC
Confidence            67899 99999887766543 2     79999986 565432   1333455678899999   89999887654

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=97.72  E-value=0.00013  Score=59.28  Aligned_cols=61  Identities=8%  Similarity=0.056  Sum_probs=48.1

Q ss_pred             eEEEEeCCCCEEEEEcCCCc-------------EEEEeCCCcc----eeeecccCCCceeEEEEccCCCEEEEEEccc
Q 041215           37 NSLNFHPIHHTFATAGSDGA-------------FNFWDKDSKQ----RLKAMSRCGQPIPCSTFNTDGSIFAYSVCYD   97 (136)
Q Consensus        37 ~~l~~~p~~~~l~s~~~dg~-------------v~vwd~~~~~----~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd   97 (136)
                      ..++|+|+|+.|+.++.+..             |++|++.++.    .+.....+...+..+.|+|+|++++.++.++
T Consensus       171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~  248 (695)
T 2bkl_A          171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRG  248 (695)
T ss_dssp             CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEET
T ss_pred             cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCC
Confidence            67899999998888887665             9999998765    3344445556889999999999888776554

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=97.65  E-value=0.00052  Score=49.42  Aligned_cols=80  Identities=11%  Similarity=-0.009  Sum_probs=57.9

Q ss_pred             eceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccC----CCceeE
Q 041215            5 EGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRC----GQPIPC   80 (136)
Q Consensus         5 dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h----~~~v~~   80 (136)
                      ++.|  +.||..++  ...+..+..     .+.+++++|++.++++...++.|.+||..++.........    ...++.
T Consensus        49 ~~~i--~~~~~~~~--~~~~~~~~~-----~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~  119 (296)
T 3e5z_A           49 QNRT--WAWSDDGQ--LSPEMHPSH-----HQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPND  119 (296)
T ss_dssp             GTEE--EEEETTSC--EEEEESSCS-----SEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCC
T ss_pred             CCEE--EEEECCCC--eEEEECCCC-----CcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCC
Confidence            4444  44777665  555555566     7899999999999888877788999999777654322211    245678


Q ss_pred             EEEccCCCEEEEE
Q 041215           81 STFNTDGSIFAYS   93 (136)
Q Consensus        81 v~~sp~~~~l~s~   93 (136)
                      ++++|+|+++++.
T Consensus       120 i~~d~~G~l~vtd  132 (296)
T 3e5z_A          120 VCLAPDGSLWFSD  132 (296)
T ss_dssp             EEECTTSCEEEEE
T ss_pred             EEECCCCCEEEEC
Confidence            9999999998874

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=97.63  E-value=0.00043  Score=50.61  Aligned_cols=80  Identities=13%  Similarity=0.194  Sum_probs=55.1

Q ss_pred             ceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCC---------------------------CcEE
Q 041215            6 GRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSD---------------------------GAFN   58 (136)
Q Consensus         6 G~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~d---------------------------g~v~   58 (136)
                      +...||.+|..+++.......  .     .+..+.|+|+++.|+.++.+                           ..|.
T Consensus        83 ~~~~l~~~~~~~g~~~~l~~~--~-----~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~  155 (347)
T 2gop_A           83 KVSEIWVADLETLSSKKILEA--K-----NIRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFW  155 (347)
T ss_dssp             TEEEEEEEETTTTEEEEEEEE--S-----EEEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEE
T ss_pred             CcceEEEEECCCCceEEEEcC--C-----CccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEE
Confidence            455677787766554433321  2     27889999999877766532                           4688


Q ss_pred             EEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEc
Q 041215           59 FWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVC   95 (136)
Q Consensus        59 vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~   95 (136)
                      +||+.++..+..+.. . .+..++|+|++ +++++..
T Consensus       156 ~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~  189 (347)
T 2gop_A          156 IFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPH  189 (347)
T ss_dssp             EEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEEC
T ss_pred             EEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEec
Confidence            999988776445544 3 78899999999 7776643

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=97.63  E-value=0.00024  Score=54.29  Aligned_cols=78  Identities=8%  Similarity=-0.145  Sum_probs=61.7

Q ss_pred             EEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEc----------CCCcEEEEeCCCcceeeecccC-----
Q 041215           10 VHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAG----------SDGAFNFWDKDSKQRLKAMSRC-----   74 (136)
Q Consensus        10 i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~----------~dg~v~vwd~~~~~~~~~~~~h-----   74 (136)
                      +..+|..+++.+.++..-..     +  .+.++|+++.++.+.          .++.|.+||..+++.+.++...     
T Consensus        48 vsvID~~t~~v~~~i~vG~~-----P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~  120 (368)
T 1mda_H           48 NWVSCAGCGVTLGHSLGAFL-----S--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRF  120 (368)
T ss_dssp             EEEEETTTTEEEEEEEECTT-----C--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSC
T ss_pred             EEEEECCCCeEEEEEeCCCC-----C--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCcccc
Confidence            34489999999988876555     6  799999997766665          3678999999999998887543     


Q ss_pred             --CCceeEEEEccCCCEEEEEE
Q 041215           75 --GQPIPCSTFNTDGSIFAYSV   94 (136)
Q Consensus        75 --~~~v~~v~~sp~~~~l~s~~   94 (136)
                        ......++|+|+|+++..+.
T Consensus       121 ~~g~~P~~ia~SpDGk~lyVan  142 (368)
T 1mda_H          121 SVGPRVHIIGNCASSACLLFFL  142 (368)
T ss_dssp             CBSCCTTSEEECTTSSCEEEEE
T ss_pred             ccCCCcceEEEcCCCCEEEEEc
Confidence              13467899999999877764

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=97.62  E-value=0.00081  Score=48.00  Aligned_cols=57  Identities=9%  Similarity=0.078  Sum_probs=45.3

Q ss_pred             ceeEEEEeCCCCEEEEEcCCC-cEEEEeCCCcceeeecccCC--CceeEEEEccCCCEEEE
Q 041215           35 SVNSLNFHPIHHTFATAGSDG-AFNFWDKDSKQRLKAMSRCG--QPIPCSTFNTDGSIFAY   92 (136)
Q Consensus        35 ~v~~l~~~p~~~~l~s~~~dg-~v~vwd~~~~~~~~~~~~h~--~~v~~v~~sp~~~~l~s   92 (136)
                      .+..+++++++.++++...++ .|.+|+. ++..+..+..+.  ..+.+++++|++.++++
T Consensus       208 ~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs  267 (286)
T 1q7f_A          208 YPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA  267 (286)
T ss_dssp             SEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE
T ss_pred             CCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE
Confidence            678999999999998888776 9999995 455666665543  34779999999988776

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=97.61  E-value=0.0005  Score=54.89  Aligned_cols=83  Identities=7%  Similarity=0.016  Sum_probs=55.4

Q ss_pred             EEEEEeeCC-CC---cceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCC--cEEEEeCCCcceeeecccCCCc----
Q 041215            8 VGVHHLDDS-QQ---SKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDG--AFNFWDKDSKQRLKAMSRCGQP----   77 (136)
Q Consensus         8 v~i~~~d~~-~~---~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg--~v~vwd~~~~~~~~~~~~h~~~----   77 (136)
                      -.|+++|.. ++   +.......+..     .+..++|+|+|+++++++.++  .|.+||..++........+...    
T Consensus       217 ~~i~~~d~~~~g~~~~~~~l~~~~~~-----~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~  291 (662)
T 3azo_A          217 TELKTARVTEDGRFADTRTLLGGPEE-----AIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPL  291 (662)
T ss_dssp             EEEEEEEECTTSCEEEEEEEEEETTB-----CEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCC
T ss_pred             cEEEEEEECCCCcccccEEeCCCCCc-----eEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCcc
Confidence            345667776 45   33333333456     889999999999888888888  5666666566554433333222    


Q ss_pred             ----eeEEEEccCCCEEEEEEc
Q 041215           78 ----IPCSTFNTDGSIFAYSVC   95 (136)
Q Consensus        78 ----v~~v~~sp~~~~l~s~~~   95 (136)
                          +.+++|++++.+++++..
T Consensus       292 w~~~~~~~~~~~~~~~~~~~~~  313 (662)
T 3azo_A          292 WTPGMRWFAPLANGLIAVVHGK  313 (662)
T ss_dssp             CSTTCCSEEECTTSCEEEEEBS
T ss_pred             ccccCceEeEeCCCEEEEEEEc
Confidence                568999999998887754

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=97.60  E-value=0.00078  Score=54.74  Aligned_cols=82  Identities=6%  Similarity=-0.007  Sum_probs=56.9

Q ss_pred             EEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCc----------------EEEEeCCCcc----ee
Q 041215            9 GVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGA----------------FNFWDKDSKQ----RL   68 (136)
Q Consensus         9 ~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~----------------v~vwd~~~~~----~~   68 (136)
                      .|+.+|..+++...... ...     .+..++|+|||+.|+.++.++.                |++|++.++.    .+
T Consensus       152 ~i~v~d~~tg~~~~~~~-~~~-----~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v  225 (710)
T 2xdw_A          152 TIKFMKVDGAKELPDVL-ERV-----KFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILC  225 (710)
T ss_dssp             EEEEEETTTTEEEEEEE-EEE-----CSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEE
T ss_pred             EEEEEECCCCCCCcccc-cCc-----ccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEE
Confidence            44557877776554322 222     4567999999988887777654                9999998765    22


Q ss_pred             eecccCCCceeEEEEccCCCEEEEEEcc
Q 041215           69 KAMSRCGQPIPCSTFNTDGSIFAYSVCY   96 (136)
Q Consensus        69 ~~~~~h~~~v~~v~~sp~~~~l~s~~~d   96 (136)
                      .+...+...+..+.|+|++++|+.++..
T Consensus       226 ~~~~~~~~~~~~~~~SpDg~~l~~~~~~  253 (710)
T 2xdw_A          226 AEFPDEPKWMGGAELSDDGRYVLLSIRE  253 (710)
T ss_dssp             ECCTTCTTCEEEEEECTTSCEEEEEEEC
T ss_pred             eccCCCCeEEEEEEEcCCCCEEEEEEEc
Confidence            3333355667899999999998877653

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=97.58  E-value=0.00087  Score=47.18  Aligned_cols=65  Identities=6%  Similarity=-0.061  Sum_probs=48.8

Q ss_pred             ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEccccc
Q 041215           35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWS   99 (136)
Q Consensus        35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd~~   99 (136)
                      .+.++++.++|.++++...++.|.+|+............+...+.++++++++.++++...++-.
T Consensus       193 ~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v  257 (270)
T 1rwi_B          193 APWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRV  257 (270)
T ss_dssp             SEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEE
T ss_pred             CceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEE
Confidence            67899999999888888888899999987654333222334678999999999988866555443

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=97.58  E-value=0.0011  Score=48.21  Aligned_cols=64  Identities=9%  Similarity=0.041  Sum_probs=51.5

Q ss_pred             ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEc-cCCCE-EEEEEcccc
Q 041215           35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFN-TDGSI-FAYSVCYDW   98 (136)
Q Consensus        35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~s-p~~~~-l~s~~~dd~   98 (136)
                      .+..+++.++|+++++....+.|.+||..+++.+..+..+...+.+++|. |++.. +++...++.
T Consensus       200 ~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~~~~  265 (297)
T 3g4e_A          200 IPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCARDGM  265 (297)
T ss_dssp             EEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEBCTTC
T ss_pred             CCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcCCcCC
Confidence            57889999999988888778889999999898888887777789999998 88764 455444443

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=97.54  E-value=0.00023  Score=52.47  Aligned_cols=81  Identities=11%  Similarity=0.079  Sum_probs=56.7

Q ss_pred             EEeeCCCCcceeEEEe--eeCCCCccceeEEEEeCCCCEEEEEc-------CCCcEEEEeCCCcceeeecc---cCCCce
Q 041215           11 HHLDDSQQSKNFTFKC--HRDGSEIYSVNSLNFHPIHHTFATAG-------SDGAFNFWDKDSKQRLKAMS---RCGQPI   78 (136)
Q Consensus        11 ~~~d~~~~~~~~~l~~--h~~~~~~~~v~~l~~~p~~~~l~s~~-------~dg~v~vwd~~~~~~~~~~~---~h~~~v   78 (136)
                      ..||..+++....+..  +..     .+..++++| +..+.+.+       .+..|++|+..++..+..+.   .+...+
T Consensus       221 ~~~~~~~G~~~~~~~~~~~~~-----~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p  294 (329)
T 3fvz_A          221 QCFKTDTKEFVREIKHASFGR-----NVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMP  294 (329)
T ss_dssp             EEEETTTCCEEEEECCTTTTT-----CEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSE
T ss_pred             EEEECCCCcEEEEEeccccCC-----CcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCe
Confidence            3377666776666642  333     677899999 44444433       34589999999998887763   566778


Q ss_pred             eEEEEccCCCEEEEEEccc
Q 041215           79 PCSTFNTDGSIFAYSVCYD   97 (136)
Q Consensus        79 ~~v~~sp~~~~l~s~~~dd   97 (136)
                      ..|+++|+|.++++...++
T Consensus       295 ~~ia~~~dG~lyvad~~~~  313 (329)
T 3fvz_A          295 HDIVASEDGTVYIGDAHTN  313 (329)
T ss_dssp             EEEEECTTSEEEEEESSSC
T ss_pred             eEEEECCCCCEEEEECCCC
Confidence            9999999997777654443

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=97.49  E-value=0.00049  Score=52.99  Aligned_cols=81  Identities=11%  Similarity=-0.044  Sum_probs=61.1

Q ss_pred             eceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEc----------CCCcEEEEeCCCcceeeecccC
Q 041215            5 EGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAG----------SDGAFNFWDKDSKQRLKAMSRC   74 (136)
Q Consensus         5 dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~----------~dg~v~vwd~~~~~~~~~~~~h   74 (136)
                      ++.|.+  +|..+++.+.++..-..     + . +.++|++++++.++          .++.|.+||..+++.+.++...
T Consensus        58 ~~~V~V--iD~~t~~v~~~I~vG~~-----P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~  128 (386)
T 3sjl_D           58 VTQQFV--IDGEAGRVIGMIDGGFL-----P-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELP  128 (386)
T ss_dssp             SEEEEE--EETTTTEEEEEEEECSS-----C-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEET
T ss_pred             CCEEEE--EECCCCeEEEEEECCCC-----C-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECC
Confidence            455555  99999998888876554     5 4 99999998766654          3578999999999888776432


Q ss_pred             -------CCceeEEEEccCCCEEEEEE
Q 041215           75 -------GQPIPCSTFNTDGSIFAYSV   94 (136)
Q Consensus        75 -------~~~v~~v~~sp~~~~l~s~~   94 (136)
                             ......++|+|+|+++..+.
T Consensus       129 ~g~r~~~g~~P~~~a~spDGk~lyVan  155 (386)
T 3sjl_D          129 DAPRFLVGTYPWMTSLTPDGKTLLFYQ  155 (386)
T ss_dssp             TCCCCCBSCCGGGEEECTTSSEEEEEE
T ss_pred             CccccccCCCCceEEEcCCCCEEEEEE
Confidence                   13567899999999777664

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=97.47  E-value=0.00035  Score=56.71  Aligned_cols=63  Identities=17%  Similarity=0.120  Sum_probs=45.3

Q ss_pred             ceeEEEEeCCCCEEE-----EEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEccc
Q 041215           35 SVNSLNFHPIHHTFA-----TAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYD   97 (136)
Q Consensus        35 ~v~~l~~~p~~~~l~-----s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd   97 (136)
                      .+..++|+|+|++|+     .++.+..|++||+.++..+............++|+|+++.|+.++.+.
T Consensus       122 ~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~  189 (695)
T 2bkl_A          122 SLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPT  189 (695)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCC
T ss_pred             EEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecC
Confidence            688999999998877     444456899999999876411111111226899999999999877654

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=97.43  E-value=0.0019  Score=47.57  Aligned_cols=79  Identities=11%  Similarity=-0.047  Sum_probs=56.9

Q ss_pred             EEeeCCCCcceeEEE-eeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcc-eeeec---------ccCCCcee
Q 041215           11 HHLDDSQQSKNFTFK-CHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQ-RLKAM---------SRCGQPIP   79 (136)
Q Consensus        11 ~~~d~~~~~~~~~l~-~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~-~~~~~---------~~h~~~v~   79 (136)
                      ..+|..+++....+. .+-.     .+..++++|+++++++...++.|.+|+..... .+..+         ..+.....
T Consensus        72 ~~~d~~~g~~~~~~~~~~~~-----~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~  146 (329)
T 3fvz_A           72 LVIDPNNAEILQSSGKNLFY-----LPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPT  146 (329)
T ss_dssp             EEECTTTCCEEEEECTTTCS-----SEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEE
T ss_pred             EEEECCCCeEEeccCCCccC-----CceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCc
Confidence            448877777655543 2223     67899999999999999889999999976432 34444         23445688


Q ss_pred             EEEEcc-CCCEEEEEE
Q 041215           80 CSTFNT-DGSIFAYSV   94 (136)
Q Consensus        80 ~v~~sp-~~~~l~s~~   94 (136)
                      .|+++| ++.++++.+
T Consensus       147 ~ia~~~~~g~lyv~d~  162 (329)
T 3fvz_A          147 DVAVEPSTGAVFVSDG  162 (329)
T ss_dssp             EEEECTTTCCEEEEEC
T ss_pred             EEEEeCCCCeEEEEeC
Confidence            999999 788888654

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=97.41  E-value=0.0015  Score=46.85  Aligned_cols=61  Identities=7%  Similarity=0.044  Sum_probs=48.9

Q ss_pred             ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEc
Q 041215           35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVC   95 (136)
Q Consensus        35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~   95 (136)
                      .+..+++.++|+++++...++.|.+||..++..+..+..+...+.+++|++++..|..+..
T Consensus       227 ~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~  287 (314)
T 1pjx_A          227 GADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEH  287 (314)
T ss_dssp             EEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEET
T ss_pred             CCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeC
Confidence            5788999999998888877888999999877766666666678999999999994444443

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=97.40  E-value=0.0016  Score=49.39  Aligned_cols=79  Identities=10%  Similarity=-0.084  Sum_probs=57.4

Q ss_pred             EEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEc----------CCCcEEEEeCCCcceeeecccC----
Q 041215            9 GVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAG----------SDGAFNFWDKDSKQRLKAMSRC----   74 (136)
Q Consensus         9 ~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~----------~dg~v~vwd~~~~~~~~~~~~h----   74 (136)
                      .+..+|..+++....+..-..     +  .+.++|++++|+.+.          .++.|.+||..+.+.+.++...    
T Consensus        48 ~v~v~D~~t~~~~~~i~~g~~-----p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~  120 (373)
T 2mad_H           48 QQWVLDAGSGSILGHVNGGFL-----P--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPR  120 (373)
T ss_pred             EEEEEECCCCeEEEEecCCCC-----C--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccc
Confidence            445588888877766654323     3  999999998887775          3577999999988777665432    


Q ss_pred             ---CCceeEEEEccCCCEEEEEE
Q 041215           75 ---GQPIPCSTFNTDGSIFAYSV   94 (136)
Q Consensus        75 ---~~~v~~v~~sp~~~~l~s~~   94 (136)
                         ......++|+|+|+++..+.
T Consensus       121 ~~~g~~p~~~~~spDG~~l~v~n  143 (373)
T 2mad_H          121 FDVGPYSWMNANTPNNADLLFFQ  143 (373)
T ss_pred             cccCCCccceEECCCCCEEEEEe
Confidence               13346899999999888765

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=97.39  E-value=0.0024  Score=45.47  Aligned_cols=62  Identities=11%  Similarity=0.115  Sum_probs=48.8

Q ss_pred             ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccC--CCceeEEEEccCCCEEEEEEccc
Q 041215           35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRC--GQPIPCSTFNTDGSIFAYSVCYD   97 (136)
Q Consensus        35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h--~~~v~~v~~sp~~~~l~s~~~dd   97 (136)
                      .+..++++|+++++++...++.|.+||.. +..+..+..+  ...+..|++++++.++++...++
T Consensus       165 ~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~  228 (286)
T 1q7f_A          165 FPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNN  228 (286)
T ss_dssp             SEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSS
T ss_pred             CcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCC
Confidence            57899999999988888888999999974 4555555433  36788999999999888765543

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=97.37  E-value=0.00063  Score=55.28  Aligned_cols=62  Identities=18%  Similarity=0.268  Sum_probs=46.7

Q ss_pred             ceeEEEEeCCCCEEEEEcCCC-----cEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEccc
Q 041215           35 SVNSLNFHPIHHTFATAGSDG-----AFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYD   97 (136)
Q Consensus        35 ~v~~l~~~p~~~~l~s~~~dg-----~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd   97 (136)
                      .+..++|+|+|++|+.+..++     .|++||+.++........+ ..+..++|+||++.|+.++.+.
T Consensus       126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~  192 (710)
T 2xdw_A          126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQ  192 (710)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCC
T ss_pred             EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECC
Confidence            578899999998877665432     7999999998765532222 2367899999999998877654

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.35  E-value=0.00024  Score=52.57  Aligned_cols=85  Identities=15%  Similarity=0.077  Sum_probs=53.7

Q ss_pred             eeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcC-C--CcEEEEeCCCcceeeecccCCCceeEEEEccCCCE
Q 041215           13 LDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGS-D--GAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSI   89 (136)
Q Consensus        13 ~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~-d--g~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~   89 (136)
                      +|..++.....+..+....+...+..++|+|+|+.|+.... +  ..|.+||+.++........+......+.|+|+++.
T Consensus        15 ~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~   94 (396)
T 3c5m_A           15 VDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERA   94 (396)
T ss_dssp             ECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSE
T ss_pred             ecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCE
Confidence            56677776666654433000002677899999987665543 3  35888898887654333333223344889999999


Q ss_pred             EEEEEccc
Q 041215           90 FAYSVCYD   97 (136)
Q Consensus        90 l~s~~~dd   97 (136)
                      |+.++.++
T Consensus        95 l~~~~~~~  102 (396)
T 3c5m_A           95 FFYVKNEL  102 (396)
T ss_dssp             EEEEETTT
T ss_pred             EEEEEcCC
Confidence            98877664

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=97.32  E-value=0.0019  Score=46.38  Aligned_cols=70  Identities=11%  Similarity=0.091  Sum_probs=55.3

Q ss_pred             CcceeEEEeeeCCCCccceeEEEEeCCCC-EEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEE
Q 041215           18 QSKNFTFKCHRDGSEIYSVNSLNFHPIHH-TFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSV   94 (136)
Q Consensus        18 ~~~~~~l~~h~~~~~~~~v~~l~~~p~~~-~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~   94 (136)
                      +.....+..+..     ...+++|+|+++ +++++..++.|..|+..++  ...+..+...+.++++++++.++++..
T Consensus        17 ~~~~~~l~~~~~-----~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~   87 (296)
T 3e5z_A           17 GAEARRLADGFT-----WTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSH   87 (296)
T ss_dssp             TCCCEEEECCCS-----SEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEET
T ss_pred             CCcEEEEecCCc-----cccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEec
Confidence            344455555555     678999999998 7888888899999999877  556666778899999999999887653

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.26  E-value=0.0026  Score=46.94  Aligned_cols=83  Identities=12%  Similarity=0.122  Sum_probs=54.8

Q ss_pred             ceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeC-CCCEEEEEcCC------CcEEEEeCCCcceeeecccC--CC
Q 041215            6 GRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHP-IHHTFATAGSD------GAFNFWDKDSKQRLKAMSRC--GQ   76 (136)
Q Consensus         6 G~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p-~~~~l~s~~~d------g~v~vwd~~~~~~~~~~~~h--~~   76 (136)
                      +...++.+|..+++..... .+..     .+..+.|+| ++..|+..+.+      ..|.+|++..+... .+..+  ..
T Consensus       166 ~~~~l~~~d~~~g~~~~~~-~~~~-----~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~  238 (396)
T 3c5m_A          166 PTCRLIKVDIETGELEVIH-QDTA-----WLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGE  238 (396)
T ss_dssp             CCEEEEEEETTTCCEEEEE-EESS-----CEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTE
T ss_pred             CcceEEEEECCCCcEEeec-cCCc-----ccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCc
Confidence            3445677888776655443 4556     788999999 77655544433      35888888765433 33233  23


Q ss_pred             ceeEEEEccCCCEEEEEEc
Q 041215           77 PIPCSTFNTDGSIFAYSVC   95 (136)
Q Consensus        77 ~v~~v~~sp~~~~l~s~~~   95 (136)
                      .+..++|+|+++.|+.++.
T Consensus       239 ~~~~~~~spdg~~l~~~~~  257 (396)
T 3c5m_A          239 SCTHEFWIPDGSAMAYVSY  257 (396)
T ss_dssp             EEEEEEECTTSSCEEEEEE
T ss_pred             cccceEECCCCCEEEEEec
Confidence            5788999999997776644

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=97.23  E-value=0.0024  Score=47.13  Aligned_cols=83  Identities=10%  Similarity=0.011  Sum_probs=60.7

Q ss_pred             eceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCC----------CcEEEEeCCCcceeeecccC
Q 041215            5 EGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSD----------GAFNFWDKDSKQRLKAMSRC   74 (136)
Q Consensus         5 dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~d----------g~v~vwd~~~~~~~~~~~~h   74 (136)
                      ++.|.+  +|..+++....+.. ..     ....+.++|++++++++..+          +.|.+||..+++....+...
T Consensus       151 ~~~v~v--iD~~t~~~~~~i~~-g~-----~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~  222 (328)
T 3dsm_A          151 QNRILK--IDTETDKVVDELTI-GI-----QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFK  222 (328)
T ss_dssp             CCEEEE--EETTTTEEEEEEEC-SS-----CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECC
T ss_pred             CCEEEE--EECCCCeEEEEEEc-CC-----CccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecC
Confidence            455655  88888777766653 23     45788999999887777655          78999999988777665432


Q ss_pred             -CCceeEEEEccCCCEEEEEEc
Q 041215           75 -GQPIPCSTFNTDGSIFAYSVC   95 (136)
Q Consensus        75 -~~~v~~v~~sp~~~~l~s~~~   95 (136)
                       ......++|+|++..+..+..
T Consensus       223 ~g~~p~~la~~~d~~~lyv~~~  244 (328)
T 3dsm_A          223 LGDWPSEVQLNGTRDTLYWINN  244 (328)
T ss_dssp             TTCCCEEEEECTTSCEEEEESS
T ss_pred             CCCCceeEEEecCCCEEEEEcc
Confidence             346899999999887765543

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=97.15  E-value=0.0014  Score=51.08  Aligned_cols=80  Identities=11%  Similarity=-0.069  Sum_probs=61.7

Q ss_pred             ceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEc----------CCCcEEEEeCCCcceeeecccC-
Q 041215            6 GRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAG----------SDGAFNFWDKDSKQRLKAMSRC-   74 (136)
Q Consensus         6 G~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~----------~dg~v~vwd~~~~~~~~~~~~h-   74 (136)
                      +.|.+  +|..+.+...++..-..     +  .+.++|+++.|+.++          .++.|.++|..+++.+.++.-. 
T Consensus        99 ~~VsV--ID~~t~~vv~~I~vG~~-----P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g  169 (426)
T 3c75_H           99 TQQFV--IDGSTGRILGMTDGGFL-----P--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPD  169 (426)
T ss_dssp             EEEEE--EETTTTEEEEEEEECSS-----C--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETT
T ss_pred             CeEEE--EECCCCEEEEEEECCCC-----C--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCC
Confidence            55655  99999999988876555     5  899999998766665          3578999999999888776432 


Q ss_pred             ------CCceeEEEEccCCCEEEEEE
Q 041215           75 ------GQPIPCSTFNTDGSIFAYSV   94 (136)
Q Consensus        75 ------~~~v~~v~~sp~~~~l~s~~   94 (136)
                            ......+.|+|+++++..+.
T Consensus       170 ~~r~~~g~~P~~~~~spDGk~lyV~n  195 (426)
T 3c75_H          170 APRFLVGTYQWMNALTPDNKNLLFYQ  195 (426)
T ss_dssp             CCCCCBSCCGGGSEECTTSSEEEEEE
T ss_pred             ccccccCCCcceEEEcCCCCEEEEEe
Confidence                  23457899999999877764

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=97.02  E-value=0.0067  Score=49.55  Aligned_cols=83  Identities=7%  Similarity=-0.035  Sum_probs=54.4

Q ss_pred             EEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCc--------------EEEEeCCCcc----eee
Q 041215            8 VGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGA--------------FNFWDKDSKQ----RLK   69 (136)
Q Consensus         8 v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~--------------v~vwd~~~~~----~~~   69 (136)
                      ..|+.+|..+++.... ..+..     .+..++|+|+ ..|+.++.+..              |.+|++.++.    .+.
T Consensus       189 ~~i~v~dl~tg~~~~~-~~~~~-----~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~  261 (741)
T 1yr2_A          189 RTVKFVGVADGKPLAD-ELKWV-----KFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVF  261 (741)
T ss_dssp             EEEEEEETTTCCEEEE-EEEEE-----ESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEE
T ss_pred             EEEEEEECCCCCCCCc-cCCCc-----eeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEe
Confidence            3456688777765432 22222     3467899999 87777766543              8889987654    233


Q ss_pred             ecccCCCceeEEEEccCCCEEEEEEccc
Q 041215           70 AMSRCGQPIPCSTFNTDGSIFAYSVCYD   97 (136)
Q Consensus        70 ~~~~h~~~v~~v~~sp~~~~l~s~~~dd   97 (136)
                      ....+...+..+.|+|+|++++..+.+.
T Consensus       262 ~~~~~~~~~~~~~~SpDG~~l~~~~~~~  289 (741)
T 1yr2_A          262 ATPELPKRGHGASVSSDGRWVVITSSEG  289 (741)
T ss_dssp             CCTTCTTCEEEEEECTTSCEEEEEEECT
T ss_pred             ccCCCCeEEEEEEECCCCCEEEEEEEcc
Confidence            3333434688999999999888776543

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=97.00  E-value=0.0084  Score=43.41  Aligned_cols=81  Identities=10%  Similarity=0.033  Sum_probs=62.3

Q ss_pred             eceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccC------CCce
Q 041215            5 EGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRC------GQPI   78 (136)
Q Consensus         5 dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h------~~~v   78 (136)
                      ++.|..  ||.. ++.+..+... .     .+..+...++++.++++..++.|..+|..+|+.+.++...      ...+
T Consensus       145 ~~~v~~--~d~~-G~~~w~~~~~-~-----~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~  215 (276)
T 3no2_A          145 TSEVRE--IAPN-GQLLNSVKLS-G-----TPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFV  215 (276)
T ss_dssp             TTEEEE--ECTT-SCEEEEEECS-S-----CCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEE
T ss_pred             CCEEEE--ECCC-CCEEEEEECC-C-----CccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCcccccc
Confidence            455544  8877 8888887754 3     4556778899999999888889999999999988777543      1347


Q ss_pred             eEEEEccCCCEEEEEE
Q 041215           79 PCSTFNTDGSIFAYSV   94 (136)
Q Consensus        79 ~~v~~sp~~~~l~s~~   94 (136)
                      ..++..+++.++++..
T Consensus       216 ~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          216 AQLFPLQNGGLYICNW  231 (276)
T ss_dssp             EEEEECTTSCEEEEEE
T ss_pred             ccceEcCCCCEEEEec
Confidence            8889999999988764

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=96.89  E-value=0.0069  Score=42.44  Aligned_cols=61  Identities=5%  Similarity=0.010  Sum_probs=46.6

Q ss_pred             ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEc
Q 041215           35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVC   95 (136)
Q Consensus        35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~   95 (136)
                      .+.+++++++++++++...++.|.+|+............+...+..|++++++.++++...
T Consensus       151 ~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~  211 (270)
T 1rwi_B          151 DPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHN  211 (270)
T ss_dssp             SCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETT
T ss_pred             CceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECC
Confidence            5678999999998888877889999998776544333333467889999999987776543

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=96.75  E-value=0.0082  Score=49.14  Aligned_cols=83  Identities=13%  Similarity=0.193  Sum_probs=60.6

Q ss_pred             eceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCC-ceeEEEE
Q 041215            5 EGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQ-PIPCSTF   83 (136)
Q Consensus         5 dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~-~v~~v~~   83 (136)
                      +|.+..  +|..+++....+..+.      ++..-.+...+.+++.++.|+.|+.||..+|+.+.++....+ ...-+.|
T Consensus       454 ~g~l~A--~D~~tG~~~W~~~~~~------~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty  525 (689)
T 1yiq_A          454 SGKLIA--WDPVKQQAAWEVPYVT------IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTY  525 (689)
T ss_dssp             EEEEEE--EETTTTEEEEEEEESS------SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEE
T ss_pred             ceeEEE--EECCCCCeEeEccCCC------CccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEE
Confidence            466655  9999999998876543      334445666788999999999999999999999988765432 2345778


Q ss_pred             ccCCCEE-EEEEc
Q 041215           84 NTDGSIF-AYSVC   95 (136)
Q Consensus        84 sp~~~~l-~s~~~   95 (136)
                      ..+|+++ +..++
T Consensus       526 ~~~G~qyv~~~~G  538 (689)
T 1yiq_A          526 SVDGEQYVTFMAG  538 (689)
T ss_dssp             EETTEEEEEEEEC
T ss_pred             EECCEEEEEEEec
Confidence            8888754 44433

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=96.71  E-value=0.035  Score=40.50  Aligned_cols=98  Identities=15%  Similarity=0.161  Sum_probs=64.9

Q ss_pred             eceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccC----------
Q 041215            5 EGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRC----------   74 (136)
Q Consensus         5 dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h----------   74 (136)
                      ||.-.++.+|+.+.+....+..-........++.+.|. +|..++..-.+..|.+.|..+++++..+...          
T Consensus       143 dGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~  221 (262)
T 3nol_A          143 DGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLP  221 (262)
T ss_dssp             CSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCC
T ss_pred             CCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCcccccccc
Confidence            44545666999988888777654321111145667787 6777777767889999999999887766432          


Q ss_pred             --CCceeEEEEccCCC-EEEEEEccccccccccc
Q 041215           75 --GQPIPCSTFNTDGS-IFAYSVCYDWSKGAENH  105 (136)
Q Consensus        75 --~~~v~~v~~sp~~~-~l~s~~~dd~~~~~~~~  105 (136)
                        .+..+.|+|+|++. ++++|  -.|-+.++..
T Consensus       222 ~~~~vlNGIA~dp~~~~lfVTG--K~Wp~~~ev~  253 (262)
T 3nol_A          222 SPIDVLNGIAWDKEHHRLFVTG--KLWPKVFEIT  253 (262)
T ss_dssp             SSCCCEEEEEEETTTTEEEEEE--TTCSEEEEEE
T ss_pred             CcCCceEEEEEcCCCCEEEEEC--CCCCceEEEE
Confidence              24568999999876 45544  3455545543

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=96.65  E-value=0.027  Score=41.37  Aligned_cols=60  Identities=15%  Similarity=0.269  Sum_probs=46.0

Q ss_pred             ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEc-cCCCEEEEEEc
Q 041215           35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFN-TDGSIFAYSVC   95 (136)
Q Consensus        35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~s-p~~~~l~s~~~   95 (136)
                      .+..+++.++|.++++...++.|.+|+. ++..+..+..+...+.+++|+ +++..|..+..
T Consensus       231 ~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          231 GMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             EEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred             CCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEec
Confidence            5678999999988887766678999998 566667776666789999998 88775544433

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=96.63  E-value=0.017  Score=42.46  Aligned_cols=80  Identities=6%  Similarity=-0.090  Sum_probs=57.1

Q ss_pred             eceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCC-----Ccee
Q 041215            5 EGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCG-----QPIP   79 (136)
Q Consensus         5 dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~-----~~v~   79 (136)
                      ++.|.+  +|..+++...++. ...     ....+++++++.++++...++.|.+||..++.....+....     ....
T Consensus        63 ~~~v~v--iD~~t~~~~~~i~-~~~-----~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~  134 (328)
T 3dsm_A           63 SHVIFA--IDINTFKEVGRIT-GFT-----SPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTE  134 (328)
T ss_dssp             GTEEEE--EETTTCCEEEEEE-CCS-----SEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCC
T ss_pred             CCEEEE--EECcccEEEEEcC-CCC-----CCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcc
Confidence            456655  8999888888875 334     67899999998666666578999999999988766654332     1556


Q ss_pred             EEEEccCCCEEEEE
Q 041215           80 CSTFNTDGSIFAYS   93 (136)
Q Consensus        80 ~v~~sp~~~~l~s~   93 (136)
                      .|++ .++.++++.
T Consensus       135 ~i~~-~~~~lyv~~  147 (328)
T 3dsm_A          135 QMVQ-YGKYVYVNC  147 (328)
T ss_dssp             CEEE-ETTEEEEEE
T ss_pred             eEEE-ECCEEEEEc
Confidence            7777 455555543

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=96.56  E-value=0.027  Score=45.17  Aligned_cols=62  Identities=11%  Similarity=0.059  Sum_probs=42.7

Q ss_pred             CceeceEEEEEeeCC--CCcceeEEEeeeCCCCccceeEEEEe----CCCCEEEEEcC-CCcEEEEeCCCcceeeec
Q 041215            2 GSIEGRVGVHHLDDS--QQSKNFTFKCHRDGSEIYSVNSLNFH----PIHHTFATAGS-DGAFNFWDKDSKQRLKAM   71 (136)
Q Consensus         2 gs~dG~v~i~~~d~~--~~~~~~~l~~h~~~~~~~~v~~l~~~----p~~~~l~s~~~-dg~v~vwd~~~~~~~~~~   71 (136)
                      ++.||.|.+  ||..  +.+....+.. ..     ....++|+    |+|++++.++. ++.|.++|..+.+.+..+
T Consensus       214 ~~~dg~V~v--iD~~~~t~~~v~~i~~-G~-----~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i  282 (567)
T 1qks_A          214 IGRDGKVNM--IDLWMKEPTTVAEIKI-GS-----EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQ  282 (567)
T ss_dssp             EETTSEEEE--EETTSSSCCEEEEEEC-CS-----EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEE
T ss_pred             EcCCCeEEE--EECCCCCCcEeEEEec-CC-----CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEE
Confidence            445676666  7774  6666666653 22     45789999    69987766665 588999998877666543

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=96.51  E-value=0.068  Score=38.45  Aligned_cols=59  Identities=14%  Similarity=0.110  Sum_probs=42.3

Q ss_pred             ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeeccc----CCCceeEEEEccCCCEEEEEEc
Q 041215           35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSR----CGQPIPCSTFNTDGSIFAYSVC   95 (136)
Q Consensus        35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~----h~~~v~~v~~sp~~~~l~s~~~   95 (136)
                      .+.++++++++.++++.  +..|.+||..++........    ....++.++++|+|+++++...
T Consensus        55 ~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~  117 (297)
T 3g4e_A           55 PVSSVALRQSGGYVATI--GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMA  117 (297)
T ss_dssp             CEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEE
T ss_pred             ceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCC
Confidence            78999999999976665  45799999887654322111    1245788999999998876533

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=96.34  E-value=0.048  Score=40.23  Aligned_cols=63  Identities=8%  Similarity=0.063  Sum_probs=47.5

Q ss_pred             ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeeccc-CCCceeEEEEccCCCEEEEEEccc
Q 041215           35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSR-CGQPIPCSTFNTDGSIFAYSVCYD   97 (136)
Q Consensus        35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~-h~~~v~~v~~sp~~~~l~s~~~dd   97 (136)
                      ....+++.++|.++++...++.|.+||..++........ +...+.+++|.+++.++++....+
T Consensus       249 ~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~  312 (343)
T 2qe8_A          249 ICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLH  312 (343)
T ss_dssp             SCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGG
T ss_pred             CCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccc
Confidence            456799999999999998889999999855643222221 245688999999999888776543

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=96.26  E-value=0.011  Score=48.22  Aligned_cols=61  Identities=10%  Similarity=0.027  Sum_probs=44.2

Q ss_pred             ceeEEEEeCCCCEEEEEcCC-----CcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEccc
Q 041215           35 SVNSLNFHPIHHTFATAGSD-----GAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYD   97 (136)
Q Consensus        35 ~v~~l~~~p~~~~l~s~~~d-----g~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd   97 (136)
                      .+..++|+|||++|+.++.+     ..|++||+.+++.+.. ..+...+..++|+|+ +.|+.++.+.
T Consensus       164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~  229 (741)
T 1yr2_A          164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAE  229 (741)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCC
T ss_pred             EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecC
Confidence            67889999999877766543     3599999999876543 122223468899999 8888776544

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=96.25  E-value=0.1  Score=37.54  Aligned_cols=98  Identities=14%  Similarity=0.164  Sum_probs=64.8

Q ss_pred             eceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccC----------
Q 041215            5 EGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRC----------   74 (136)
Q Consensus         5 dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h----------   74 (136)
                      ||.-.++.+|+.+.+....+...........++.+.|. +|..++..-.+..|.+.|..+++++..+...          
T Consensus       121 dgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~  199 (243)
T 3mbr_X          121 DGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALT  199 (243)
T ss_dssp             CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCC
T ss_pred             CCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCcccccccc
Confidence            45555667999988888877654321222245677776 6676766666788999999999887665421          


Q ss_pred             ---CCceeEEEEccCCC-EEEEEEccccccccccc
Q 041215           75 ---GQPIPCSTFNTDGS-IFAYSVCYDWSKGAENH  105 (136)
Q Consensus        75 ---~~~v~~v~~sp~~~-~l~s~~~dd~~~~~~~~  105 (136)
                         .+..+.|+|+|++. +++||-.  |-+.++..
T Consensus       200 ~~~~~vlNGIA~d~~~~~lfVTGK~--wp~~~~v~  232 (243)
T 3mbr_X          200 DSTNDVLNGIAFDAEHDRLFVTGKR--WPMLYEIR  232 (243)
T ss_dssp             CTTSSCEEEEEEETTTTEEEEEETT--CSEEEEEE
T ss_pred             CCcCCceEEEEEcCCCCEEEEECCC--CCcEEEEE
Confidence               24568999999765 5665544  44445544

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=96.20  E-value=0.056  Score=43.88  Aligned_cols=81  Identities=12%  Similarity=0.061  Sum_probs=51.6

Q ss_pred             EEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCC-------------cEEEEeCCCcc----eeee
Q 041215            8 VGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDG-------------AFNFWDKDSKQ----RLKA   70 (136)
Q Consensus         8 v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg-------------~v~vwd~~~~~----~~~~   70 (136)
                      ..|+.+|..+++.... .....     ....++|+ |++.|+.++.+.             .|++|++.+..    .+..
T Consensus       155 ~~i~v~dl~tg~~~~~-~~~~~-----k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~  227 (693)
T 3iuj_A          155 REIHLMDVESKQPLET-PLKDV-----KFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFG  227 (693)
T ss_dssp             EEEEEEETTTCSEEEE-EEEEE-----ESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEES
T ss_pred             EEEEEEECCCCCCCcc-ccCCc-----eeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEe
Confidence            4445577777764432 11111     23578999 998777776653             38999987653    3344


Q ss_pred             ccc-CCCceeEEEEccCCCEEEEEEc
Q 041215           71 MSR-CGQPIPCSTFNTDGSIFAYSVC   95 (136)
Q Consensus        71 ~~~-h~~~v~~v~~sp~~~~l~s~~~   95 (136)
                      ... |...+..+.|+|++++++....
T Consensus       228 ~~~~~~~~~~~~~~SpDg~~l~~~~~  253 (693)
T 3iuj_A          228 AIPAQHHRYVGATVTEDDRFLLISAA  253 (693)
T ss_dssp             CSGGGCCSEEEEEECTTSCEEEEEEE
T ss_pred             cCCCCCeEEEEEEEcCCCCEEEEEEc
Confidence            444 5556788999999998765544

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=96.20  E-value=0.057  Score=39.51  Aligned_cols=97  Identities=10%  Similarity=0.067  Sum_probs=65.1

Q ss_pred             eceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccC----------
Q 041215            5 EGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRC----------   74 (136)
Q Consensus         5 dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h----------   74 (136)
                      ||.-.++.+|+.+.+....+..-........++.+.|. +|.+++..-.+..|.+.|..+++++..+...          
T Consensus       152 dGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~  230 (268)
T 3nok_A          152 DGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQV  230 (268)
T ss_dssp             CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTC
T ss_pred             CCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccc
Confidence            34555666999988888887654432222245777887 6777777667788999999999887655421          


Q ss_pred             ---CCceeEEEEccCC-CEEEEEEcccccccccc
Q 041215           75 ---GQPIPCSTFNTDG-SIFAYSVCYDWSKGAEN  104 (136)
Q Consensus        75 ---~~~v~~v~~sp~~-~~l~s~~~dd~~~~~~~  104 (136)
                         .+..+.|+|+|++ ++++||--  |-+.|+.
T Consensus       231 ~~~~~vlNGIA~dp~~~rlfVTGK~--Wp~~~ev  262 (268)
T 3nok_A          231 TNPEAVLNGIAVEPGSGRIFMTGKL--WPRLFEV  262 (268)
T ss_dssp             CCTTCCEEEEEECTTTCCEEEEETT--CSEEEEE
T ss_pred             cCcCCceEEEEEcCCCCEEEEeCCC--CCceEEE
Confidence               2466899999965 56776544  4433443

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=96.20  E-value=0.07  Score=38.88  Aligned_cols=88  Identities=8%  Similarity=0.016  Sum_probs=59.7

Q ss_pred             eEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccC------------
Q 041215            7 RVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRC------------   74 (136)
Q Consensus         7 ~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h------------   74 (136)
                      .-.++.+|+.+.+....+..-........++.+.|. ++.+++....++.|.+.|..+++.+..+...            
T Consensus       125 s~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~  203 (266)
T 2iwa_A          125 TSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFR  203 (266)
T ss_dssp             SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCT
T ss_pred             CCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCccccccccccc
Confidence            334455899888877777643221111246788888 6777777767789999999999888776431            


Q ss_pred             -CCceeEEEEccCCCE-EEEEEc
Q 041215           75 -GQPIPCSTFNTDGSI-FAYSVC   95 (136)
Q Consensus        75 -~~~v~~v~~sp~~~~-l~s~~~   95 (136)
                       ....+.|+|+|++.. ++++..
T Consensus       204 ~~~v~nGIa~~~~~~~lfVTgk~  226 (266)
T 2iwa_A          204 DIDVLNGIAWDQENKRIFVTGKL  226 (266)
T ss_dssp             TCCCEEEEEEETTTTEEEEEETT
T ss_pred             ccCceEEEEEcCCCCEEEEECCC
Confidence             135689999999865 444433

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=96.11  E-value=0.12  Score=36.62  Aligned_cols=82  Identities=5%  Similarity=-0.041  Sum_probs=52.7

Q ss_pred             EEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEe----CCCC-EEEEEcCCCcEEEEeCC-Ccc-----eeeecccCC-
Q 041215            8 VGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFH----PIHH-TFATAGSDGAFNFWDKD-SKQ-----RLKAMSRCG-   75 (136)
Q Consensus         8 v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~----p~~~-~l~s~~~dg~v~vwd~~-~~~-----~~~~~~~h~-   75 (136)
                      ..++.+|.. ++.. .+..+..     ....++|+    |++. ++++...++.|.+|+.. ++.     ....+..+. 
T Consensus       153 ~~l~~~~~~-g~~~-~~~~~~~-----~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~  225 (314)
T 1pjx_A          153 GSIYCFTTD-GQMI-QVDTAFQ-----FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHE  225 (314)
T ss_dssp             EEEEEECTT-SCEE-EEEEEES-----SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSS
T ss_pred             CeEEEECCC-CCEE-EeccCCC-----CcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCC
Confidence            455667655 3332 2233344     56889999    9995 45555667889999976 343     223333343 


Q ss_pred             CceeEEEEccCCCEEEEEEcc
Q 041215           76 QPIPCSTFNTDGSIFAYSVCY   96 (136)
Q Consensus        76 ~~v~~v~~sp~~~~l~s~~~d   96 (136)
                      ..+..++++++|.++++...+
T Consensus       226 ~~p~~i~~d~~G~l~v~~~~~  246 (314)
T 1pjx_A          226 GGADGMDFDEDNNLLVANWGS  246 (314)
T ss_dssp             CEEEEEEEBTTCCEEEEEETT
T ss_pred             CCCCceEECCCCCEEEEEcCC
Confidence            567889999999988875443

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=96.11  E-value=0.079  Score=37.20  Aligned_cols=58  Identities=9%  Similarity=0.058  Sum_probs=44.7

Q ss_pred             ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceee-ecccCCCceeEEEEccCCCEEEEE
Q 041215           35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLK-AMSRCGQPIPCSTFNTDGSIFAYS   93 (136)
Q Consensus        35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~-~~~~h~~~v~~v~~sp~~~~l~s~   93 (136)
                      .+.++++.+++.++++...++.|..||. ++.... ........+..+++++++.++++.
T Consensus       100 ~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~  158 (299)
T 2z2n_A          100 APYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTE  158 (299)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEE
T ss_pred             CceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEe
Confidence            6789999999998888877888999998 554332 233345678999999999888765

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=96.11  E-value=0.071  Score=37.43  Aligned_cols=59  Identities=12%  Similarity=0.018  Sum_probs=44.5

Q ss_pred             ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcce-eeecccCCCceeEEEEccCCCEEEEEE
Q 041215           35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQR-LKAMSRCGQPIPCSTFNTDGSIFAYSV   94 (136)
Q Consensus        35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~-~~~~~~h~~~v~~v~~sp~~~~l~s~~   94 (136)
                      .+.++++.+++.++++...++.|..|+.. +.. ...+......+..+++++++.++++..
T Consensus        58 ~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~  117 (299)
T 2z2n_A           58 KVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEM  117 (299)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEET
T ss_pred             ceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEec
Confidence            68899999999988888778889999976 332 122223456789999999998888653

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=95.99  E-value=0.043  Score=44.77  Aligned_cols=78  Identities=17%  Similarity=0.215  Sum_probs=58.3

Q ss_pred             ceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCC-CceeEEEEc
Q 041215            6 GRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCG-QPIPCSTFN   84 (136)
Q Consensus         6 G~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~-~~v~~v~~s   84 (136)
                      |.|..  +|..+++....+. +..     ++....+...+.+++.++.|+.+++||..+++.+..+.... ....-+.|.
T Consensus       457 g~l~A--~D~~tG~~~W~~~-~~~-----~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~  528 (677)
T 1kb0_A          457 GRLLA--WDPVAQKAAWSVE-HVS-----PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYM  528 (677)
T ss_dssp             EEEEE--EETTTTEEEEEEE-ESS-----SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEE
T ss_pred             cEEEE--EeCCCCcEEeecC-CCC-----CCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEE
Confidence            55554  8999999988876 444     45555667778888889999999999999999998886443 333556777


Q ss_pred             cCCCEEE
Q 041215           85 TDGSIFA   91 (136)
Q Consensus        85 p~~~~l~   91 (136)
                      .+|++++
T Consensus       529 ~~G~~~v  535 (677)
T 1kb0_A          529 VDGRQYV  535 (677)
T ss_dssp             ETTEEEE
T ss_pred             eCCEEEE
Confidence            8887544

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=95.97  E-value=0.062  Score=41.25  Aligned_cols=71  Identities=17%  Similarity=0.203  Sum_probs=53.2

Q ss_pred             EEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCC-EEEE-EcCCCcEEEEeCCCcceeeecccCCCceeEEEEccC
Q 041215            9 GVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHH-TFAT-AGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTD   86 (136)
Q Consensus         9 ~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~-~l~s-~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~   86 (136)
                      .++.+|..+.+.+..+.. ..     .+..|.++++++ +|++ ...++.|.++|..+++.+.++... +.-+.|.+++|
T Consensus       312 ~V~viD~~t~kv~~~i~v-g~-----~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~-~~p~~l~~s~d  384 (386)
T 3sjl_D          312 FVVVLDAKTGERLAKFEM-GH-----EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL-GHGPQVITTAD  384 (386)
T ss_dssp             EEEEEETTTCCEEEEEEE-EE-----EECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC-CSSCCEEEECC
T ss_pred             EEEEEECCCCeEEEEEEC-CC-----CcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC-CCCceeEECCc
Confidence            456699999998888764 23     678999999995 6655 455889999999999988877543 33456666665

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=95.80  E-value=0.17  Score=37.15  Aligned_cols=86  Identities=10%  Similarity=0.030  Sum_probs=53.4

Q ss_pred             EEEeeCCCCcceeEEEeeeC-CCCccceeEEEEeCCC-CEEEEEc---CCCcEEEEeCCCcceeeecccCC---------
Q 041215           10 VHHLDDSQQSKNFTFKCHRD-GSEIYSVNSLNFHPIH-HTFATAG---SDGAFNFWDKDSKQRLKAMSRCG---------   75 (136)
Q Consensus        10 i~~~d~~~~~~~~~l~~h~~-~~~~~~v~~l~~~p~~-~~l~s~~---~dg~v~vwd~~~~~~~~~~~~h~---------   75 (136)
                      |+.||..+++....+..... ..+...+..+++++++ ..+++..   .++.|.+||..++.....+..|.         
T Consensus        95 i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~  174 (343)
T 2qe8_A           95 LVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDL  174 (343)
T ss_dssp             EEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCC
T ss_pred             EEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccce
Confidence            44577777766655543211 0111146889999865 5556655   56789999998776554443220         


Q ss_pred             --------------------CceeEEEEccCCCEEEEEEc
Q 041215           76 --------------------QPIPCSTFNTDGSIFAYSVC   95 (136)
Q Consensus        76 --------------------~~v~~v~~sp~~~~l~s~~~   95 (136)
                                          ..++.|+|+|+++.|..+..
T Consensus       175 ~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~  214 (343)
T 2qe8_A          175 VIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPM  214 (343)
T ss_dssp             EETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEES
T ss_pred             eECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeC
Confidence                                13578999999987766644

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=95.75  E-value=0.0057  Score=46.07  Aligned_cols=60  Identities=18%  Similarity=0.294  Sum_probs=37.9

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeee
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKA   70 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~   70 (136)
                      |+.||.+..  ||..+++.+..+..  +     .+.+..+..++..++.++.|+.|..||..+|+.+..
T Consensus        15 gs~dg~v~a--~d~~tG~~~W~~~~--~-----~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~   74 (369)
T 2hz6_A           15 STLDGSLHA--VSKRTGSIKWTLKE--D-----PVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTK   74 (369)
T ss_dssp             EETTSEEEE--EETTTCCEEEEEEC--C-----CSCCCC-----CCEEECTTTCCEEEC-----CCSEE
T ss_pred             EcCCCEEEE--EECCCCCEEEEecC--C-----CceecceEcCCCEEEEeCCCCEEEEEECCCCceeee
Confidence            566787765  99999999988875  4     554555556677788888999999999988766433

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=95.65  E-value=0.13  Score=36.99  Aligned_cols=57  Identities=2%  Similarity=-0.031  Sum_probs=45.0

Q ss_pred             ceeEEEEeCCCC-EEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEE
Q 041215           35 SVNSLNFHPIHH-TFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYS   93 (136)
Q Consensus        35 ~v~~l~~~p~~~-~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~   93 (136)
                      ......|+|+++ ++++...++.|..|+. ++. ...+..+...++.++++++|+++++.
T Consensus        46 ~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~  103 (305)
T 3dr2_A           46 WSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCE  103 (305)
T ss_dssp             SEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEE
T ss_pred             CccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEE
Confidence            567899999997 7778778889999987 454 34555566778999999999977753

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=95.54  E-value=0.21  Score=34.94  Aligned_cols=58  Identities=3%  Similarity=-0.113  Sum_probs=43.9

Q ss_pred             ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceee-ecccCCCceeEEEEccCCCEEEEE
Q 041215           35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLK-AMSRCGQPIPCSTFNTDGSIFAYS   93 (136)
Q Consensus        35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~-~~~~h~~~v~~v~~sp~~~~l~s~   93 (136)
                      .+.++++.+++.++++....+.|.+|+. ++.... ........+.++++++++.++++.
T Consensus       189 ~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~  247 (300)
T 2qc5_A          189 APVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTE  247 (300)
T ss_dssp             CEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEE
T ss_pred             CcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEec
Confidence            5789999999988888777788999998 444332 233345678899999999977754

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=95.54  E-value=0.18  Score=35.37  Aligned_cols=59  Identities=12%  Similarity=0.030  Sum_probs=45.0

Q ss_pred             ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCccee-eecccCCCceeEEEEccCCCEEEEEE
Q 041215           35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRL-KAMSRCGQPIPCSTFNTDGSIFAYSV   94 (136)
Q Consensus        35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~-~~~~~h~~~v~~v~~sp~~~~l~s~~   94 (136)
                      .+.++++.+++.++++...++.|..||.. +... .........+.++++++++.++++..
T Consensus        63 ~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~  122 (300)
T 2qc5_A           63 KVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQL  122 (300)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEET
T ss_pred             cceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEcc
Confidence            67899999999988888778889999987 5442 22233446789999999999887653

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=95.53  E-value=0.46  Score=34.63  Aligned_cols=60  Identities=15%  Similarity=0.047  Sum_probs=42.0

Q ss_pred             ceeEEEEeCCCCEE-EEEcCCCcEEEEeCC--Cc-ce-----eeecccCCCceeEEEEccCCCEEEEEE
Q 041215           35 SVNSLNFHPIHHTF-ATAGSDGAFNFWDKD--SK-QR-----LKAMSRCGQPIPCSTFNTDGSIFAYSV   94 (136)
Q Consensus        35 ~v~~l~~~p~~~~l-~s~~~dg~v~vwd~~--~~-~~-----~~~~~~h~~~v~~v~~sp~~~~l~s~~   94 (136)
                      ....++|+|+++.| ++...++.|.+|++.  ++ ..     ...+.........++++++|.++++..
T Consensus       180 ~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~  248 (326)
T 2ghs_A          180 IPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW  248 (326)
T ss_dssp             SEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE
T ss_pred             ccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEe
Confidence            56789999999755 555567889999986  55 21     222333345678899999998877653

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=95.44  E-value=0.013  Score=47.56  Aligned_cols=61  Identities=18%  Similarity=0.145  Sum_probs=42.8

Q ss_pred             ceeEEEEeCCCCEEEE-E----cCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEccc
Q 041215           35 SVNSLNFHPIHHTFAT-A----GSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYD   97 (136)
Q Consensus        35 ~v~~l~~~p~~~~l~s-~----~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd   97 (136)
                      .+..++|+|+|++|+- .    +....|++||+.+++.+... .+......++|+ |++.|+.++.++
T Consensus       130 ~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~  195 (693)
T 3iuj_A          130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDK  195 (693)
T ss_dssp             EEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSC
T ss_pred             EEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecC
Confidence            6788999999987663 2    22346999999998765431 111123678999 999888887764

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=95.43  E-value=0.19  Score=36.10  Aligned_cols=65  Identities=14%  Similarity=-0.027  Sum_probs=45.6

Q ss_pred             eEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeeccc----CCCceeEEEEccCCCEEEE
Q 041215           22 FTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSR----CGQPIPCSTFNTDGSIFAY   92 (136)
Q Consensus        22 ~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~----h~~~v~~v~~sp~~~~l~s   92 (136)
                      ..+.....     .+..++++++|+++++...++.|.+|+.. +........    ....++.++++++|.++++
T Consensus        79 ~~~~~~~~-----~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~t  147 (305)
T 3dr2_A           79 DVLLDATA-----FTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFT  147 (305)
T ss_dssp             EEEEESCS-----CEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEE
T ss_pred             EEEeCCCC-----ccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEe
Confidence            34444455     68899999999988777767789999875 543221111    1245678999999998886

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=95.30  E-value=0.14  Score=38.68  Aligned_cols=56  Identities=5%  Similarity=0.080  Sum_probs=44.9

Q ss_pred             EEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCC-EEEEEc-CCCcEEEEeCCCcceeeec
Q 041215           10 VHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHH-TFATAG-SDGAFNFWDKDSKQRLKAM   71 (136)
Q Consensus        10 i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~-~l~s~~-~dg~v~vwd~~~~~~~~~~   71 (136)
                      ++.+|..+.+....+. -..     ...++.|+|+++ +++++. .++.|.+||+.+++.+..+
T Consensus       300 V~VID~~t~~vv~~i~-~g~-----~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i  357 (373)
T 2mad_H          300 VTSVTGLVGQTSSQIS-LGH-----DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             EEEEECCCCEEEEEEE-CCC-----CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence            4558888888877774 233     578999999998 788877 4899999999999888773

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=95.30  E-value=0.14  Score=38.85  Aligned_cols=67  Identities=6%  Similarity=-0.016  Sum_probs=50.5

Q ss_pred             EeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCC-EEEEEc-CCCcEEEEeCCCcceeeecccCCCceeEEEEcc
Q 041215           12 HLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHH-TFATAG-SDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNT   85 (136)
Q Consensus        12 ~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~-~l~s~~-~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp   85 (136)
                      .+|..+.+....+....      ...++.|+|+++ ++++.. .++.|.++|+.+++.+.++... .....+++.+
T Consensus       298 ViD~~t~~vv~~i~vg~------~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg-~~P~~i~~~~  366 (368)
T 1mda_H          298 SVTASVGQTSGPISNGH------DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD-KGPESLSVQN  366 (368)
T ss_dssp             EEESSSCCEEECCEEEE------EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC-SCCCEEECCC
T ss_pred             EEECCCCeEEEEEECCC------CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECC-CCCCEEEeec
Confidence            48888888777766432      568999999996 677777 5899999999999998888654 3345565543

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=95.07  E-value=0.26  Score=38.17  Aligned_cols=56  Identities=11%  Similarity=0.202  Sum_probs=46.0

Q ss_pred             EEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCC-EEEEEc-CCCcEEEEeCCCcceeeec
Q 041215           10 VHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHH-TFATAG-SDGAFNFWDKDSKQRLKAM   71 (136)
Q Consensus        10 i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~-~l~s~~-~dg~v~vwd~~~~~~~~~~   71 (136)
                      ++.+|..+.+....+..- .     ....+.|+|+++ ++++.. .++.|.++|+.+++.+.++
T Consensus       352 VsVID~~T~kvv~~I~vg-~-----~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          352 VVVLNAETGERINKIELG-H-----EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             EEEEETTTCCEEEEEEEE-E-----EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             EEEEECCCCeEEEEEECC-C-----CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence            344999999988888642 2     468999999998 888877 5899999999999988876

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=95.06  E-value=0.14  Score=41.72  Aligned_cols=83  Identities=13%  Similarity=0.123  Sum_probs=56.7

Q ss_pred             eceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCce-eEEEE
Q 041215            5 EGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPI-PCSTF   83 (136)
Q Consensus         5 dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v-~~v~~   83 (136)
                      +|.|..  +|..+++....+... .     ++....+...+.+++.++.|+.|++||..+++.+..+....... .-+.+
T Consensus       437 ~g~l~A--~D~~tG~~~W~~~~~-~-----~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~  508 (668)
T 1kv9_A          437 SGALLA--WDPVKQKAAWKVPYP-T-----HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTF  508 (668)
T ss_dssp             EEEEEE--EETTTTEEEEEEEES-S-----SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEE
T ss_pred             cceEEE--EeCCCCcEEEEccCC-C-----CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEE
Confidence            466655  999999998887643 2     33344455567888899999999999999999988776543211 33455


Q ss_pred             ccCCC-EEEEEEc
Q 041215           84 NTDGS-IFAYSVC   95 (136)
Q Consensus        84 sp~~~-~l~s~~~   95 (136)
                      ..+|+ +++.+.+
T Consensus       509 ~~~G~~yva~~~G  521 (668)
T 1kv9_A          509 ELAGRQYVAIMAG  521 (668)
T ss_dssp             EETTEEEEEEEEC
T ss_pred             EECCEEEEEEEec
Confidence            56776 4444443

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=94.88  E-value=0.1  Score=37.38  Aligned_cols=78  Identities=8%  Similarity=0.089  Sum_probs=50.1

Q ss_pred             ceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEE
Q 041215            3 SIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCST   82 (136)
Q Consensus         3 s~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~   82 (136)
                      +.++.+  +.+|.. ++....+.....     .+.++...+++.+++..   +.|..+| .++.....+......+.++.
T Consensus       154 t~~~~l--~~~d~~-g~~~~~~~~~~~-----~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~~~~~~~~~  221 (330)
T 3hxj_A          154 SNDNYL--YAINPD-GTEKWRFKTNDA-----ITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKWNFYAGYWTVTRPA  221 (330)
T ss_dssp             CTTSEE--EEECTT-SCEEEEEECSSC-----CCSCCEECTTCCEEEES---SSEEEEC-TTSCEEEEECCSSCCCSCCE
T ss_pred             cCCCEE--EEECCC-CCEeEEEecCCC-----ceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEEEccCCcceeceE
Confidence            334444  337766 666655554444     56667777777755544   6788888 67766666555556678888


Q ss_pred             EccCCCEEEE
Q 041215           83 FNTDGSIFAY   92 (136)
Q Consensus        83 ~sp~~~~l~s   92 (136)
                      ..+++.+++.
T Consensus       222 ~~~~g~l~v~  231 (330)
T 3hxj_A          222 ISEDGTIYVT  231 (330)
T ss_dssp             ECTTSCEEEE
T ss_pred             ECCCCeEEEE
Confidence            8888877664

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=94.77  E-value=0.16  Score=40.82  Aligned_cols=83  Identities=19%  Similarity=0.217  Sum_probs=55.2

Q ss_pred             eceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCce-eEEEE
Q 041215            5 EGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPI-PCSTF   83 (136)
Q Consensus         5 dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v-~~v~~   83 (136)
                      +|.+..  +|..+++........ .     ++..-.+...+.+++.++.|+.++.||..+|+.+-++....... .-+.|
T Consensus       465 ~G~l~A--~D~~tG~~~W~~~~~-~-----~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y  536 (582)
T 1flg_A          465 VGSLRA--MDPVSGKVVWEHKEH-L-----PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITW  536 (582)
T ss_dssp             SEEEEE--ECTTTCCEEEEEEES-S-----CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEE
T ss_pred             cceEEE--EECCCCCEEEEecCC-C-----CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEE
Confidence            455544  999999988876643 2     22222222246778889999999999999999988776543222 23677


Q ss_pred             ccCCCE-EEEEEc
Q 041215           84 NTDGSI-FAYSVC   95 (136)
Q Consensus        84 sp~~~~-l~s~~~   95 (136)
                      ..+|++ +++.++
T Consensus       537 ~~~G~qYv~~~~G  549 (582)
T 1flg_A          537 EQDGEQYLGVTVG  549 (582)
T ss_dssp             EETTEEEEEEEEC
T ss_pred             EECCEEEEEEEcc
Confidence            788874 444444

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=94.76  E-value=0.17  Score=38.57  Aligned_cols=58  Identities=7%  Similarity=0.088  Sum_probs=37.0

Q ss_pred             ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeee----cccCCCc--eeEEEEccC-CCEEEE
Q 041215           35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKA----MSRCGQP--IPCSTFNTD-GSIFAY   92 (136)
Q Consensus        35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~----~~~h~~~--v~~v~~sp~-~~~l~s   92 (136)
                      .+.+++++|+...|+.+..++.|..||..++.....    ..+....  .+.++|+|+ +.++++
T Consensus       220 ~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~  284 (409)
T 3hrp_A          220 KIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMS  284 (409)
T ss_dssp             CCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEE
T ss_pred             CcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEE
Confidence            578899999544444466788899999887653221    2222222  239999995 555554

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=94.70  E-value=0.14  Score=39.04  Aligned_cols=59  Identities=7%  Similarity=-0.110  Sum_probs=44.5

Q ss_pred             ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEc
Q 041215           35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVC   95 (136)
Q Consensus        35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~   95 (136)
                      ....|+|+++++++++...++.|++||..++........ ..... ++|++++..+.++..
T Consensus       132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~  190 (409)
T 3hrp_A          132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTKDKQRVYSIGW  190 (409)
T ss_dssp             CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECTTSSEEEEEBS
T ss_pred             CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEecCCCcEEEEec
Confidence            567999999999888888788999999987765443333 23334 999999987776544

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=94.60  E-value=0.15  Score=36.41  Aligned_cols=82  Identities=12%  Similarity=0.189  Sum_probs=54.4

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS   81 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v   81 (136)
                      |+.+|.+.  .+|.. +.....+.....     .+.++...+++.++ .++.++.|..+|.. +.....+......+.++
T Consensus       113 ~t~~~~l~--~~d~~-g~~~~~~~~~~~-----~~~~~~~~~~g~l~-vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~  182 (330)
T 3hxj_A          113 TSMDGHLY--AINTD-GTEKWRFKTKKA-----IYATPIVSEDGTIY-VGSNDNYLYAINPD-GTEKWRFKTNDAITSAA  182 (330)
T ss_dssp             ECTTSEEE--EECTT-SCEEEEEECSSC-----CCSCCEECTTSCEE-EECTTSEEEEECTT-SCEEEEEECSSCCCSCC
T ss_pred             EecCCEEE--EEcCC-CCEEEEEcCCCc-----eeeeeEEcCCCEEE-EEcCCCEEEEECCC-CCEeEEEecCCCceeee
Confidence            44455554  47777 666666554444     45666777777644 46667889999988 77666665555667788


Q ss_pred             EEccCCCEEEEE
Q 041215           82 TFNTDGSIFAYS   93 (136)
Q Consensus        82 ~~sp~~~~l~s~   93 (136)
                      .+.+++.+++..
T Consensus       183 ~~d~~g~l~v~t  194 (330)
T 3hxj_A          183 SIGKDGTIYFGS  194 (330)
T ss_dssp             EECTTCCEEEES
T ss_pred             EEcCCCEEEEEe
Confidence            888888876643

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=94.59  E-value=0.079  Score=39.71  Aligned_cols=78  Identities=13%  Similarity=0.094  Sum_probs=47.7

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCC---CEEEEEcCCCcEEEEeCCCcceeeecccCCCce
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIH---HTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPI   78 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~---~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v   78 (136)
                      |+.||.+..  ||.++++....+.....       ....+.++.   ..++.++.++.|..||..+++.+-++.. ..++
T Consensus       136 ~~~dg~v~a--~d~~tG~~~W~~~~~~~-------~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~-~~pv  205 (369)
T 2hz6_A          136 GRTEYTITM--YDTKTRELRWNATYFDY-------AASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY-ASPV  205 (369)
T ss_dssp             EEEEEEEEC--CCSSSSSCCCEEEEEEE-------CCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC-SSCE
T ss_pred             EecCCEEEE--EECCCCCEEEeEecccc-------cCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC-CCce
Confidence            455666655  77777777666543211       112233322   4566778899999999999988766653 3444


Q ss_pred             e-EEEEccCCCE
Q 041215           79 P-CSTFNTDGSI   89 (136)
Q Consensus        79 ~-~v~~sp~~~~   89 (136)
                      . ...+++++..
T Consensus       206 ~~~~~~~~dg~~  217 (369)
T 2hz6_A          206 VAFYVWQREGLR  217 (369)
T ss_dssp             EEEEECTTSSCE
T ss_pred             EEEEEecCCceE
Confidence            3 4456667754

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=94.17  E-value=0.43  Score=37.49  Aligned_cols=83  Identities=8%  Similarity=0.125  Sum_probs=56.6

Q ss_pred             EEEeeCCCCcceeEEEeeeCCCCccce-eEEEEeCCCCEEEEEc-------------------CCCcEEEEeCCCcceee
Q 041215           10 VHHLDDSQQSKNFTFKCHRDGSEIYSV-NSLNFHPIHHTFATAG-------------------SDGAFNFWDKDSKQRLK   69 (136)
Q Consensus        10 i~~~d~~~~~~~~~l~~h~~~~~~~~v-~~l~~~p~~~~l~s~~-------------------~dg~v~vwd~~~~~~~~   69 (136)
                      +..+|..+.+.+..+..-.. ..  .+ -.+.|+|+++.+++..                   .+..|.+||+.+++.+.
T Consensus       166 v~vlD~~T~~v~~~~~~~~~-~~--~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~  242 (462)
T 2ece_A          166 ILMLDHYSFEPLGKWEIDRG-DQ--YLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIH  242 (462)
T ss_dssp             EEEECTTTCCEEEECCSBCT-TC--CCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEE
T ss_pred             EEEEECCCCeEEEEEccCCC-Cc--cccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEee
Confidence            44589888888888763322 00  11 1477899999888885                   36789999999887777


Q ss_pred             ecccC--CCceeEEEE--ccCCCEEEEEEc
Q 041215           70 AMSRC--GQPIPCSTF--NTDGSIFAYSVC   95 (136)
Q Consensus        70 ~~~~h--~~~v~~v~~--sp~~~~l~s~~~   95 (136)
                      ++...  ......|.|  +|+++++..++.
T Consensus       243 tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e  272 (462)
T 2ece_A          243 SLTLGEENRMALELRPLHDPTKLMGFINMV  272 (462)
T ss_dssp             EEESCTTEEEEEEEEECSSTTCCEEEEEEE
T ss_pred             EEecCCCCCccceeEeeECCCCCEEEEEEe
Confidence            76542  133456666  999987665554

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=93.82  E-value=0.37  Score=38.44  Aligned_cols=81  Identities=14%  Similarity=0.010  Sum_probs=52.9

Q ss_pred             eceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCc-eeEEEE
Q 041215            5 EGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQP-IPCSTF   83 (136)
Q Consensus         5 dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~-v~~v~~   83 (136)
                      +|.+.  .+|..+++....+... .     .+....+...+..++.++.|+.|++||..+++.+.++...... -.-+.|
T Consensus       443 ~g~l~--a~D~~tG~~~W~~~~~-~-----~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~  514 (571)
T 2ad6_A          443 MGQIR--AFDLTTGKAKWTKWEK-F-----AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTY  514 (571)
T ss_dssp             CEEEE--EECTTTCCEEEEEEES-S-----CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEE
T ss_pred             CCeEE--EEECCCCCEEEEecCC-C-----CccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEE
Confidence            45554  4999999988887532 2     2222233334567777899999999999999998777543221 123456


Q ss_pred             ccCCCEEEEE
Q 041215           84 NTDGSIFAYS   93 (136)
Q Consensus        84 sp~~~~l~s~   93 (136)
                      ..++++++..
T Consensus       515 ~~~G~~yv~~  524 (571)
T 2ad6_A          515 SFKGKQYIGS  524 (571)
T ss_dssp             EETTEEEEEE
T ss_pred             EECCEEEEEE
Confidence            6788765543

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=93.60  E-value=0.17  Score=41.18  Aligned_cols=44  Identities=16%  Similarity=0.207  Sum_probs=29.9

Q ss_pred             CcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEccccc
Q 041215           55 GAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWS   99 (136)
Q Consensus        55 g~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd~~   99 (136)
                      +.|..||+.+++.+-++. +..++....++..+.+++.++.++..
T Consensus       457 g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l  500 (677)
T 1kb0_A          457 GRLLAWDPVAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRL  500 (677)
T ss_dssp             EEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEE
T ss_pred             cEEEEEeCCCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcE
Confidence            679999999998876664 33445555566677777767665543

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=92.82  E-value=0.42  Score=39.04  Aligned_cols=47  Identities=15%  Similarity=0.126  Sum_probs=32.7

Q ss_pred             CcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEcccccccc
Q 041215           55 GAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSKGA  102 (136)
Q Consensus        55 g~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd~~~~~  102 (136)
                      |.|..||+.+++.+-++..+ .++..-.++..+.+++.++.|++...+
T Consensus       455 g~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~gt~dg~l~a~  501 (689)
T 1yiq_A          455 GKLIAWDPVKQQAAWEVPYV-TIFNGGTLSTAGNLVFEGSADGRVIAY  501 (689)
T ss_dssp             EEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEE
T ss_pred             eeEEEEECCCCCeEeEccCC-CCccCccceECCCEEEEECCCCcEEEE
Confidence            67999999999887776554 333444566677788878777665444

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=92.14  E-value=0.6  Score=33.86  Aligned_cols=79  Identities=9%  Similarity=0.008  Sum_probs=50.7

Q ss_pred             eceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccC-----CCcee
Q 041215            5 EGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRC-----GQPIP   79 (136)
Q Consensus         5 dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h-----~~~v~   79 (136)
                      ++.+.+  +|..+.+.+.++..-..     .  ...+++++..|+.+..++.|.++|..+.+.+..+.-.     -..++
T Consensus        85 ~~~v~v--iD~~t~~v~~~i~~g~~-----~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~n  155 (266)
T 2iwa_A           85 KNIGFI--YDRRTLSNIKNFTHQMK-----D--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLN  155 (266)
T ss_dssp             CSEEEE--EETTTTEEEEEEECCSS-----S--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEE
T ss_pred             CCEEEE--EECCCCcEEEEEECCCC-----C--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccce
Confidence            445544  88888877777753212     1  2335567765555566789999999988777665422     12467


Q ss_pred             EEEEccCCCEEEEE
Q 041215           80 CSTFNTDGSIFAYS   93 (136)
Q Consensus        80 ~v~~sp~~~~l~s~   93 (136)
                      .+.|. ++.+++..
T Consensus       156 ele~~-dg~lyvn~  168 (266)
T 2iwa_A          156 ELEYI-NGEVWANI  168 (266)
T ss_dssp             EEEEE-TTEEEEEE
T ss_pred             eEEEE-CCEEEEec
Confidence            88888 67666554

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=91.64  E-value=1.6  Score=31.32  Aligned_cols=58  Identities=16%  Similarity=0.157  Sum_probs=43.2

Q ss_pred             ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEE
Q 041215           35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSV   94 (136)
Q Consensus        35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~   94 (136)
                      ....++|++++.++++-...+.|..||.... ....+ .....+..|+++++++++++..
T Consensus        33 ~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~-~~~~~p~gia~~~dG~l~vad~   90 (306)
T 2p4o_A           33 FLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHA-TVEGKVSGLAFTSNGDLVATGW   90 (306)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEE-ECSSEEEEEEECTTSCEEEEEE
T ss_pred             CcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEE-eCCCCceeEEEcCCCcEEEEec
Confidence            5678999999998888778889999987653 32222 2235688999999999777543

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=91.58  E-value=0.83  Score=37.03  Aligned_cols=73  Identities=16%  Similarity=0.173  Sum_probs=48.9

Q ss_pred             eEEEEEeeCCC--Ccc-eeEEEeeeCCCCccceeEEEEeCCCCEEEEEc-CCCcEEEEeCCCcc------------eeee
Q 041215            7 RVGVHHLDDSQ--QSK-NFTFKCHRDGSEIYSVNSLNFHPIHHTFATAG-SDGAFNFWDKDSKQ------------RLKA   70 (136)
Q Consensus         7 ~v~i~~~d~~~--~~~-~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~-~dg~v~vwd~~~~~------------~~~~   70 (136)
                      .|.+  +|..+  ++. ...+.. ..     ...++.++|||++++.++ .+..|.++|+.+..            .+.+
T Consensus       255 ~V~V--ID~~~~~~~~~~~~Ipv-g~-----~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~  326 (595)
T 1fwx_A          255 GVKV--VDGRKEASSLFTRYIPI-AN-----NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE  326 (595)
T ss_dssp             TEEE--EECSGGGCCSSEEEEEE-ES-----SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEEC
T ss_pred             cEEE--EeCcccCCceeEEEEec-CC-----CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEE
Confidence            3555  78776  444 444443 33     568999999997655555 56889999998652            2334


Q ss_pred             cccCCCceeEEEEccCCC
Q 041215           71 MSRCGQPIPCSTFNTDGS   88 (136)
Q Consensus        71 ~~~h~~~v~~v~~sp~~~   88 (136)
                      . .-......++|+++|.
T Consensus       327 v-~vG~gP~h~aF~~dG~  343 (595)
T 1fwx_A          327 P-ELGLGPLHTAFDGRGN  343 (595)
T ss_dssp             C-BCCSCEEEEEECTTSE
T ss_pred             c-CCCCCcceEEECCCCe
Confidence            3 2334568899999994

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=91.47  E-value=0.41  Score=39.36  Aligned_cols=59  Identities=17%  Similarity=0.151  Sum_probs=39.5

Q ss_pred             ceeEEEEe-CCCCEEEE-EcCCC----cEEEEeCCCc-ceee-ecccCCCceeEEEEccCCCEEEEEEcc
Q 041215           35 SVNSLNFH-PIHHTFAT-AGSDG----AFNFWDKDSK-QRLK-AMSRCGQPIPCSTFNTDGSIFAYSVCY   96 (136)
Q Consensus        35 ~v~~l~~~-p~~~~l~s-~~~dg----~v~vwd~~~~-~~~~-~~~~h~~~v~~v~~sp~~~~l~s~~~d   96 (136)
                      .+...+|+ |+|++|+- .+.+|    .|+++|+.++ ..+. .+.   .....++|+|+++.|+....+
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d  241 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKD  241 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEEC
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEEC
Confidence            56789999 99986653 33333    4999999988 5321 111   123578999999877766544

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=91.38  E-value=1.1  Score=36.25  Aligned_cols=82  Identities=13%  Similarity=0.006  Sum_probs=53.6

Q ss_pred             ceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCC-ceeEEEEc
Q 041215            6 GRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQ-PIPCSTFN   84 (136)
Q Consensus         6 G~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~-~v~~v~~s   84 (136)
                      |.+.  -+|..+++.+..... ..     ++..-.+...+.+++.++.|+.|+.||..+|+.+-++..... ...-+.|.
T Consensus       453 G~l~--A~D~~tG~~~W~~~~-~~-----~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~  524 (599)
T 1w6s_A          453 GQIK--AYNAITGDYKWEKME-RF-----AVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYT  524 (599)
T ss_dssp             EEEE--EECTTTCCEEEEEEE-SS-----CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEE
T ss_pred             CeEE--EEECCCCCEEeEecC-CC-----CccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEE
Confidence            4554  489999988877652 22     222212233467788899999999999999999877754432 22336677


Q ss_pred             cCCCE-EEEEEc
Q 041215           85 TDGSI-FAYSVC   95 (136)
Q Consensus        85 p~~~~-l~s~~~   95 (136)
                      .+|++ +++..+
T Consensus       525 ~~G~qyv~~~~G  536 (599)
T 1w6s_A          525 HKGTQYVAIYYG  536 (599)
T ss_dssp             ETTEEEEEEEEC
T ss_pred             eCCEEEEEEEcc
Confidence            78874 555544

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=91.36  E-value=1.5  Score=31.99  Aligned_cols=79  Identities=11%  Similarity=0.044  Sum_probs=49.9

Q ss_pred             eeceEEEEEeeCCCCcceeEEEeeeCCCCcccee--EEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215            4 IEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVN--SLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS   81 (136)
Q Consensus         4 ~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~--~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v   81 (136)
                      .+|.|+.  +|..+++....+  -..     ...  .+++..+ ++++..-.++.+.+||..+.+.+.++.... .  ..
T Consensus        73 ~~g~v~~--iD~~Tgkv~~~~--l~~-----~~FgeGit~~g~-~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~-e--Gw  139 (268)
T 3nok_A           73 HQGTLRQ--LSLESAQPVWME--RLG-----NIFAEGLASDGE-RLYQLTWTEGLLFTWSGMPPQRERTTRYSG-E--GW  139 (268)
T ss_dssp             TTTEEEE--CCSSCSSCSEEE--ECT-----TCCEEEEEECSS-CEEEEESSSCEEEEEETTTTEEEEEEECSS-C--CC
T ss_pred             CCCEEEE--EECCCCcEEeEE--CCC-----CcceeEEEEeCC-EEEEEEccCCEEEEEECCcCcEEEEEeCCC-c--ee
Confidence            4566555  899999888877  333     333  3555432 555555567899999999999888876432 1  12


Q ss_pred             EEccCCCEEEEEEc
Q 041215           82 TFNTDGSIFAYSVC   95 (136)
Q Consensus        82 ~~sp~~~~l~s~~~   95 (136)
                      .+++++..|..+.+
T Consensus       140 GLt~Dg~~L~vSdG  153 (268)
T 3nok_A          140 GLCYWNGKLVRSDG  153 (268)
T ss_dssp             CEEEETTEEEEECS
T ss_pred             EEecCCCEEEEECC
Confidence            33356666665443

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=91.06  E-value=0.89  Score=35.72  Aligned_cols=58  Identities=14%  Similarity=0.071  Sum_probs=42.8

Q ss_pred             ceeEEEEeCCCCEEEEEcCC------CcEEEEeCCCcceeeecccCCC---ceeEEEEccCCCEEEEE
Q 041215           35 SVNSLNFHPIHHTFATAGSD------GAFNFWDKDSKQRLKAMSRCGQ---PIPCSTFNTDGSIFAYS   93 (136)
Q Consensus        35 ~v~~l~~~p~~~~l~s~~~d------g~v~vwd~~~~~~~~~~~~h~~---~v~~v~~sp~~~~l~s~   93 (136)
                      ....+...|++ +++++..+      +.|.++|..+.+.+.++.....   --..+.|+|+++.++++
T Consensus       139 ~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS  205 (462)
T 2ece_A          139 RLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSS  205 (462)
T ss_dssp             EEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEEC
T ss_pred             cccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEc
Confidence            34567788999 66666655      6799999999998888763322   23458899999987765

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=90.49  E-value=0.89  Score=33.01  Aligned_cols=78  Identities=14%  Similarity=0.188  Sum_probs=49.1

Q ss_pred             eceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccC--C---Ccee
Q 041215            5 EGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRC--G---QPIP   79 (136)
Q Consensus         5 dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h--~---~~v~   79 (136)
                      ++.+.  .+|..+.+.+.++.-- .       ....+.+++..|+..+.++.|.++|..+.+.+..+.-.  .   ..++
T Consensus       106 ~~~v~--v~D~~t~~~~~ti~~~-~-------eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lN  175 (262)
T 3nol_A          106 NGLGF--VWNIRNLRQVRSFNYD-G-------EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELN  175 (262)
T ss_dssp             SSEEE--EEETTTCCEEEEEECS-S-------CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEE
T ss_pred             CCEEE--EEECccCcEEEEEECC-C-------CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccc
Confidence            34444  4888888888887642 2       12233356765555555788999999998877665432  2   3345


Q ss_pred             EEEEccCCCEEEEE
Q 041215           80 CSTFNTDGSIFAYS   93 (136)
Q Consensus        80 ~v~~sp~~~~l~s~   93 (136)
                      .+.|. +|++++..
T Consensus       176 ELe~~-~G~lyan~  188 (262)
T 3nol_A          176 ELEWV-DGEIFANV  188 (262)
T ss_dssp             EEEEE-TTEEEEEE
T ss_pred             eeEEE-CCEEEEEE
Confidence            67776 67666644

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=90.16  E-value=2.3  Score=31.05  Aligned_cols=67  Identities=4%  Similarity=-0.019  Sum_probs=40.1

Q ss_pred             ceeceEEEEEeeCCCCcceeEEEeeeCCC--C--cccee-EEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeeccc
Q 041215            3 SIEGRVGVHHLDDSQQSKNFTFKCHRDGS--E--IYSVN-SLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSR   73 (136)
Q Consensus         3 s~dG~v~i~~~d~~~~~~~~~l~~h~~~~--~--~~~v~-~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~   73 (136)
                      +.+|.+..  +|..+++.+..+.......  .  ...+. .+..  .+..++.++.++.|..+|..+++.+-.+..
T Consensus        60 ~~~g~v~a--~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~  131 (376)
T 3q7m_A           60 DRAGLVKA--LNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV--SGGHVYIGSEKAQVYALNTSDGTVAWQTKV  131 (376)
T ss_dssp             CTTSEEEE--EETTTCCEEEEEECCC---CCSCCCCCEEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             cCCCeEEE--EEccCCceeeeecCccccccccccCcccccCceE--eCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence            44565544  8888888887765421100  0  00222 2222  345677777889999999999987655543

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=90.08  E-value=3.9  Score=29.20  Aligned_cols=61  Identities=7%  Similarity=0.029  Sum_probs=42.5

Q ss_pred             ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcce--eeecccCCCceeEEEEc---cCCCEEEEEEcc
Q 041215           35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQR--LKAMSRCGQPIPCSTFN---TDGSIFAYSVCY   96 (136)
Q Consensus        35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~--~~~~~~h~~~v~~v~~s---p~~~~l~s~~~d   96 (136)
                      ....+++.++|+++++....+.|.+++.. +..  +..+........+++|.   |++..|..+...
T Consensus       213 ~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          213 NIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             CCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             CCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence            45678999999888777777889999875 544  22344334668999998   886654444443

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=89.93  E-value=0.58  Score=34.37  Aligned_cols=67  Identities=10%  Similarity=0.025  Sum_probs=39.6

Q ss_pred             eeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCce
Q 041215            4 IEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPI   78 (136)
Q Consensus         4 ~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v   78 (136)
                      .+|.+..  +|..+++..........    ..+......  +..|+.++.+|.|.++|..+++.+..+......+
T Consensus       285 ~~g~l~~--~d~~tG~~~w~~~~~~~----~~~~~~~~~--~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~  351 (376)
T 3q7m_A          285 QNDRVMA--LTIDGGVTLWTQSDLLH----RLLTSPVLY--NGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGF  351 (376)
T ss_dssp             TTCCEEE--EETTTCCEEEEECTTTT----SCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCTTCB
T ss_pred             CCCeEEE--EECCCCcEEEeecccCC----CcccCCEEE--CCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcc
Confidence            3445443  77777776655431111    012222222  4677788889999999999998876665433333

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=89.71  E-value=0.98  Score=37.10  Aligned_cols=59  Identities=8%  Similarity=-0.062  Sum_probs=37.8

Q ss_pred             eEEEEeCCCCEEEEEcCC-----CcEEEEeCCCcce--eeecc-cCCCceeEEEEccCCCEEEEEEc
Q 041215           37 NSLNFHPIHHTFATAGSD-----GAFNFWDKDSKQR--LKAMS-RCGQPIPCSTFNTDGSIFAYSVC   95 (136)
Q Consensus        37 ~~l~~~p~~~~l~s~~~d-----g~v~vwd~~~~~~--~~~~~-~h~~~v~~v~~sp~~~~l~s~~~   95 (136)
                      ..++|+|+++.|+....+     ..|.++++.++..  ...+. ........+.|+|++++|+..+.
T Consensus       224 ~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~  290 (751)
T 2xe4_A          224 GEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQ  290 (751)
T ss_dssp             SCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEE
T ss_pred             eeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEec
Confidence            468899999766555543     2577778766532  12222 22244567899999998876653

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=89.67  E-value=2.9  Score=33.87  Aligned_cols=78  Identities=10%  Similarity=0.046  Sum_probs=55.1

Q ss_pred             eeCCCCcceeEEEe-eeCCCCccceeEEEE-e-CCCCEEEEEc------------------CCCcEEEEeCCCcceeeec
Q 041215           13 LDDSQQSKNFTFKC-HRDGSEIYSVNSLNF-H-PIHHTFATAG------------------SDGAFNFWDKDSKQRLKAM   71 (136)
Q Consensus        13 ~d~~~~~~~~~l~~-h~~~~~~~~v~~l~~-~-p~~~~l~s~~------------------~dg~v~vwd~~~~~~~~~~   71 (136)
                      +|..+.+...++.- ...     .+..+++ . |++.++++++                  .++.+.+.|..+.+.+.++
T Consensus       117 Idl~t~~~~~ii~ip~g~-----~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI  191 (595)
T 1fwx_A          117 VRCDVMKCDAILEIPNAK-----GIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQV  191 (595)
T ss_dssp             EETTTTEEEEEEECSSCC-----SEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEE
T ss_pred             EECCCceEeeEEeCCCCC-----CCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEE
Confidence            56666665554432 122     5778888 5 9998888884                  2357889999998888777


Q ss_pred             ccCCCceeEEEEccCCCEEEEEEcc
Q 041215           72 SRCGQPIPCSTFNTDGSIFAYSVCY   96 (136)
Q Consensus        72 ~~h~~~v~~v~~sp~~~~l~s~~~d   96 (136)
                      .-.. ....++++|+|.++.+++.+
T Consensus       192 ~Vgg-~pd~~~~spdGk~~~vt~~~  215 (595)
T 1fwx_A          192 LVSG-NLDNCDADYEGKWAFSTSYN  215 (595)
T ss_dssp             EESS-CCCCEEECSSSSEEEEEESC
T ss_pred             EeCC-CccceEECCCCCEEEEEecC
Confidence            5433 45778899999998877644

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=89.44  E-value=1.7  Score=31.10  Aligned_cols=78  Identities=12%  Similarity=0.102  Sum_probs=48.4

Q ss_pred             eceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccC--C---Ccee
Q 041215            5 EGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRC--G---QPIP   79 (136)
Q Consensus         5 dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h--~---~~v~   79 (136)
                      ++.+.  .+|..+.+.+.++.-- .     .-..++  +++..|+.+..++.|.++|..+.+.+..+.-.  .   ..++
T Consensus        84 ~~~v~--v~D~~tl~~~~ti~~~-~-----~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lN  153 (243)
T 3mbr_X           84 NHEGF--VYDLATLTPRARFRYP-G-----EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLN  153 (243)
T ss_dssp             SSEEE--EEETTTTEEEEEEECS-S-----CCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEE
T ss_pred             CCEEE--EEECCcCcEEEEEeCC-C-----CceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccce
Confidence            34444  4888888888887642 2     223444  45655555555788999999988777665432  1   3456


Q ss_pred             EEEEccCCCEEEEE
Q 041215           80 CSTFNTDGSIFAYS   93 (136)
Q Consensus        80 ~v~~sp~~~~l~s~   93 (136)
                      .+.|. +|++++..
T Consensus       154 eLe~~-~G~lyanv  166 (243)
T 3mbr_X          154 ELEWV-NGELLANV  166 (243)
T ss_dssp             EEEEE-TTEEEEEE
T ss_pred             eeEEe-CCEEEEEE
Confidence            66665 66666544

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=88.45  E-value=6.9  Score=29.83  Aligned_cols=59  Identities=12%  Similarity=0.086  Sum_probs=40.7

Q ss_pred             ceeEEEEeC-CCCEEEEEcCCCcEEEEeCCCcceeeecc-cCCCceeEEEEccCCCEEEEE
Q 041215           35 SVNSLNFHP-IHHTFATAGSDGAFNFWDKDSKQRLKAMS-RCGQPIPCSTFNTDGSIFAYS   93 (136)
Q Consensus        35 ~v~~l~~~p-~~~~l~s~~~dg~v~vwd~~~~~~~~~~~-~h~~~v~~v~~sp~~~~l~s~   93 (136)
                      ....++++| ++.++++-...+.|..++...+....... ......+.|+|+|++.++..+
T Consensus       227 ~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~  287 (430)
T 3tc9_A          227 NCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIV  287 (430)
T ss_dssp             SCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEE
T ss_pred             CceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEE
Confidence            457889999 67878777777889999988664322111 122456789999999844434

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=86.60  E-value=6.2  Score=27.31  Aligned_cols=58  Identities=10%  Similarity=-0.009  Sum_probs=37.0

Q ss_pred             ceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCC-CEEEE
Q 041215           35 SVNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDG-SIFAY   92 (136)
Q Consensus        35 ~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~-~~l~s   92 (136)
                      ....++++|++ .++++-...+.|.+++.................+.++++|++ .++++
T Consensus        80 ~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~  139 (267)
T 1npe_A           80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWT  139 (267)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEE
T ss_pred             CccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEE
Confidence            56899999976 455566666789999886432221122222456899999964 44444

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=86.21  E-value=6.5  Score=27.19  Aligned_cols=59  Identities=8%  Similarity=0.023  Sum_probs=39.0

Q ss_pred             ceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEE
Q 041215           35 SVNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYS   93 (136)
Q Consensus        35 ~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~   93 (136)
                      .+.+++|++++ .++++-...+.|..++.........+.........+++++++..+..+
T Consensus        37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~   96 (267)
T 1npe_A           37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWT   96 (267)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEE
T ss_pred             cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEE
Confidence            67899999976 455555567889999987654332232223567899999875544433

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=86.13  E-value=5.6  Score=31.13  Aligned_cols=54  Identities=20%  Similarity=0.299  Sum_probs=39.8

Q ss_pred             ceeEEEEeCCC---CEEEEEcCCCcEEEEeCCCcc--ee--------eecccCCCceeEEEEccCCC
Q 041215           35 SVNSLNFHPIH---HTFATAGSDGAFNFWDKDSKQ--RL--------KAMSRCGQPIPCSTFNTDGS   88 (136)
Q Consensus        35 ~v~~l~~~p~~---~~l~s~~~dg~v~vwd~~~~~--~~--------~~~~~h~~~v~~v~~sp~~~   88 (136)
                      +|..+.|||.+   ..|+.=..|+.|++||+....  ..        ..+......|.+++|..++-
T Consensus       126 ~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~l  192 (452)
T 3pbp_A          126 SIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGL  192 (452)
T ss_dssp             CEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSS
T ss_pred             ceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCc
Confidence            79999999998   488899999999999987521  11        11112236788999998764

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=85.26  E-value=10  Score=30.38  Aligned_cols=82  Identities=15%  Similarity=0.116  Sum_probs=49.3

Q ss_pred             EEEEeeCCCCc--ceeEEEe-eeCCCCccceeEEEEeCCCCEEEEEcCC-CcEEEEeCCCcceeeecccCC-CceeEEEE
Q 041215            9 GVHHLDDSQQS--KNFTFKC-HRDGSEIYSVNSLNFHPIHHTFATAGSD-GAFNFWDKDSKQRLKAMSRCG-QPIPCSTF   83 (136)
Q Consensus         9 ~i~~~d~~~~~--~~~~l~~-h~~~~~~~~v~~l~~~p~~~~l~s~~~d-g~v~vwd~~~~~~~~~~~~h~-~~v~~v~~   83 (136)
                      .++.||..+++  .+..+.. +..     ...++++.+++.+++.|+.+ ..+.+||..+..-.....-.. ..-.+++.
T Consensus       220 ~~~~yd~~t~~w~~~~~~~~~~~~-----~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~  294 (656)
T 1k3i_A          220 LTSSWDPSTGIVSDRTVTVTKHDM-----FCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSAT  294 (656)
T ss_dssp             EEEEECTTTCCBCCCEEEECSCCC-----SSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEE
T ss_pred             EEEEEeCCCCcEEeCcccCCCCCC-----ccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEE
Confidence            45678876543  2222221 122     34457788899999999854 579999987654322211111 12245666


Q ss_pred             ccCCCEEEEEEc
Q 041215           84 NTDGSIFAYSVC   95 (136)
Q Consensus        84 sp~~~~l~s~~~   95 (136)
                      .+++++++.|+.
T Consensus       295 ~~dg~iyv~GG~  306 (656)
T 1k3i_A          295 MSDGRVFTIGGS  306 (656)
T ss_dssp             CTTSCEEEECCC
T ss_pred             ecCCeEEEEeCc
Confidence            779999998873

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=84.35  E-value=9.2  Score=27.28  Aligned_cols=60  Identities=7%  Similarity=-0.052  Sum_probs=39.0

Q ss_pred             ceeEEEEeCCCCE-EEEEcCCCcEEEEeCCCcc--eeeecccCCCceeEEEEccCCCEEEEEEc
Q 041215           35 SVNSLNFHPIHHT-FATAGSDGAFNFWDKDSKQ--RLKAMSRCGQPIPCSTFNTDGSIFAYSVC   95 (136)
Q Consensus        35 ~v~~l~~~p~~~~-l~s~~~dg~v~vwd~~~~~--~~~~~~~h~~~v~~v~~sp~~~~l~s~~~   95 (136)
                      ....++++|++.. +++-...+.|..|++....  ....+....+ ...|++.++|.++++...
T Consensus       186 ~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~  248 (322)
T 2fp8_A          186 VPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSE  248 (322)
T ss_dssp             CCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEE
T ss_pred             cCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecC
Confidence            4578999999974 4555556789999886421  1111111223 688999999987776543

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=82.36  E-value=2.4  Score=36.09  Aligned_cols=37  Identities=14%  Similarity=0.191  Sum_probs=31.6

Q ss_pred             ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeec
Q 041215           35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAM   71 (136)
Q Consensus        35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~   71 (136)
                      .+.++...++..++++-+.|..+++|++.++.++.+.
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~  273 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI  273 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence            4677788888899999999999999999998877653

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=82.07  E-value=3.2  Score=29.63  Aligned_cols=56  Identities=14%  Similarity=0.188  Sum_probs=36.2

Q ss_pred             ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeeccc-----C-C-CceeEEEEccCCCEEEE
Q 041215           35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSR-----C-G-QPIPCSTFNTDGSIFAY   92 (136)
Q Consensus        35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~-----h-~-~~v~~v~~sp~~~~l~s   92 (136)
                      .+..++|||++.+.+.  .+|.+.-.+..+......+..     . . ....++.|.|+|.+.++
T Consensus        42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav  104 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV  104 (236)
T ss_dssp             TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE
T ss_pred             cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe
Confidence            6779999998886655  667777666544222111111     0 0 12588999999999887

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=81.61  E-value=7  Score=27.95  Aligned_cols=57  Identities=11%  Similarity=0.143  Sum_probs=42.3

Q ss_pred             ceeEEEEeCCCCEE-EEEcCCCcEEEEeCCCcceeeecccC-CCceeEEEEccCCCEEEE
Q 041215           35 SVNSLNFHPIHHTF-ATAGSDGAFNFWDKDSKQRLKAMSRC-GQPIPCSTFNTDGSIFAY   92 (136)
Q Consensus        35 ~v~~l~~~p~~~~l-~s~~~dg~v~vwd~~~~~~~~~~~~h-~~~v~~v~~sp~~~~l~s   92 (136)
                      .++.++|+|++..| +....++.|...|.. +..+..+.-. ....-.|++.+++.++++
T Consensus        28 ~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs   86 (255)
T 3qqz_A           28 NISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVIS   86 (255)
T ss_dssp             CEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEE
T ss_pred             CcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEE
Confidence            79999999987644 446667888888987 7777766422 256778899888876664

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=80.99  E-value=15  Score=27.49  Aligned_cols=59  Identities=10%  Similarity=0.135  Sum_probs=40.6

Q ss_pred             ceeEEEEeCCCCEEEE-EcCCCcEEEEeCCC-cce--eeecccCCCceeEEEEcc-CCCEEEEEE
Q 041215           35 SVNSLNFHPIHHTFAT-AGSDGAFNFWDKDS-KQR--LKAMSRCGQPIPCSTFNT-DGSIFAYSV   94 (136)
Q Consensus        35 ~v~~l~~~p~~~~l~s-~~~dg~v~vwd~~~-~~~--~~~~~~h~~~v~~v~~sp-~~~~l~s~~   94 (136)
                      ..+.++|+|+++.|+. -+..+.|..|++.. +..  ...+ ...+....+++.+ +|.+++++.
T Consensus       222 ~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~  285 (355)
T 3sre_A          222 FANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCH  285 (355)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEE
T ss_pred             ccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEec
Confidence            5689999999965554 44567899998863 322  1233 2246678899999 599888654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	136
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-13
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-04
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-07
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-04
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	0.001
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-05
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	7e-04
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-04
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	0.002
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.001
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.003

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.2 bits (149), Expect = 5e-13
 Identities = 37/125 (29%), Positives = 54/125 (43%), Gaps = 11/125 (8%)

Query: 1   VGSIEGRVGVHHLDDS----QQSKNFTFKCHR----DGSEIYSVNSLNFHPIHHTFATAG 52
             SI+GRV V   DD       SK F F+CHR    D +  Y VNS+ F P H    TAG
Sbjct: 211 CSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAG 270

Query: 53  SDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWSK--GAENHNPATA 110
           SDG  + W+  +++++K  ++              +I   +   D  K   A +      
Sbjct: 271 SDGIISCWNLQTRKKIKNFAK-FNEDSVVKIACSDNILCLATSDDTFKTNAAIDQTIELN 329

Query: 111 KTYIY 115
            + IY
Sbjct: 330 ASSIY 334

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.5 bits (85), Expect = 2e-04
 Identities = 11/79 (13%), Positives = 21/79 (26%), Gaps = 8/79 (10%)

Query: 23 TFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDS---KQRLKAMSRCGQPIP 79
            +  +D      ++ +   P          DG+   +  D       L    R   P+ 
Sbjct: 6  IEQAPKD-----YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLL 60

Query: 80 CSTFNTDGSIFAYSVCYDW 98
          C  F  +  +  Y      
Sbjct: 61 CCNFIDNTDLQIYVGTVQG 79

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.1 bits (105), Expect = 5e-07
 Identities = 17/97 (17%), Positives = 30/97 (30%), Gaps = 6/97 (6%)

Query: 1   VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFW 60
            GS +    +  L   Q+   ++      G     + S++F            D   N W
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICG-----ITSVSFSKSGRLLLAGYDDFNCNVW 297

Query: 61  DKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYD 97
           D     R   ++     + C     DG   A +  +D
Sbjct: 298 DALKADRAGVLAGHDNRVSCLGVTDDGMAVA-TGSWD 333

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.8 bits (86), Expect = 2e-04
 Identities = 10/78 (12%), Positives = 25/78 (32%), Gaps = 5/78 (6%)

Query: 23  TFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCST 82
           T + H        + ++++        +A  DG    WD  +  ++ A+      +    
Sbjct: 50  TLRGHLA-----KIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 104

Query: 83  FNTDGSIFAYSVCYDWSK 100
           +   G+  A     +   
Sbjct: 105 YAPSGNYVACGGLDNICS 122

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 35.1 bits (79), Expect = 0.001
 Identities = 9/61 (14%), Positives = 16/61 (26%), Gaps = 7/61 (11%)

Query: 1   VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFW 60
            G  +    V     + ++       H +      V+ L         AT   D     W
Sbjct: 287 AGYDDFNCNVWDALKADRAG--VLAGHDN-----RVSCLGVTDDGMAVATGSWDSFLKIW 339

Query: 61  D 61
           +
Sbjct: 340 N 340

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.7 bits (91), Expect = 4e-05
 Identities = 14/88 (15%), Positives = 26/88 (29%), Gaps = 6/88 (6%)

Query: 10  VHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLK 69
           +   D S      T   H +      V  + FH       +   D     WD  +K+ +K
Sbjct: 229 IKMWDVSTGMCLMTLVGHDN-----WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMK 283

Query: 70  AMSRCGQPIPCSTFNTDGSIFAYSVCYD 97
            ++     +    F+        +   D
Sbjct: 284 TLNAHEHFVTSLDFHKTAPYVV-TGSVD 310

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.9 bits (81), Expect = 7e-04
 Identities = 13/77 (16%), Positives = 25/77 (32%), Gaps = 5/77 (6%)

Query: 22 FTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS 81
          +    HR       V  + FHP+     +A  D     WD ++    + +      +   
Sbjct: 11 YALSGHRS-----PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDI 65

Query: 82 TFNTDGSIFAYSVCYDW 98
          +F+  G + A       
Sbjct: 66 SFDHSGKLLASCSADMT 82

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.1 bits (84), Expect = 3e-04
 Identities = 17/102 (16%), Positives = 31/102 (30%), Gaps = 11/102 (10%)

Query: 1   VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYS-----VNSLNFHPIHHTFATAGSDG 55
            GS++  V + +L ++    +            Y      V S+          +   D 
Sbjct: 271 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR 330

Query: 56  AFNFWDKDSKQRLKAMS------RCGQPIPCSTFNTDGSIFA 91
              FWDK S   L  +               S+   + ++FA
Sbjct: 331 GVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFA 372

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.8 bits (78), Expect = 0.002
 Identities = 12/61 (19%), Positives = 19/61 (31%), Gaps = 3/61 (4%)

Query: 2   GSIEGRVGVHHLDDSQQSKNFTFKCHRDG-SEIYSVNSLNFHPIHHTFATAGSDGAFNFW 60
           GS +  V                + HR+    +   N  +  P ++ FAT   D     W
Sbjct: 326 GSKDRGVLFWDKKSGNPLL--MLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW 383

Query: 61  D 61
            
Sbjct: 384 K 384

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 35.2 bits (79), Expect = 0.001
 Identities = 9/61 (14%), Positives = 20/61 (32%), Gaps = 5/61 (8%)

Query: 1  VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFW 60
          +      V ++    ++  +    K H        V  +++ P  +   T G+D     W
Sbjct: 24 ICPNNHEVHIYEKSGNKWVQVHELKEHNG-----QVTGVDWAPDSNRIVTCGTDRNAYVW 78

Query: 61 D 61
           
Sbjct: 79 T 79

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.0 bits (76), Expect = 0.003
 Identities = 11/61 (18%), Positives = 17/61 (27%), Gaps = 2/61 (3%)

Query: 37  NSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCY 96
            SL F      F + G D   N W       +   S+    +     + D      +   
Sbjct: 269 LSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF-QSKESSSVLSCDISVDDKYIV-TGSG 326

Query: 97  D 97
           D
Sbjct: 327 D 327

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	136
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.65
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.57
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.54
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.51
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.5
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.48
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.46
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.45
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.42
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.41
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.38
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.37
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.34
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.32
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.29
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.28
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.27
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.25
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.25
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.23
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.23
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.22
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.19
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.14
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.14
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.11
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.07
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.03
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	98.99
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.99
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	98.97
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	98.96
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.93
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.86
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	98.84
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.83
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.51
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.34
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.31
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.26
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.26
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.25
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.21
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.2
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.19
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.16
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	98.13
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	97.78
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	97.66
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	97.55
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	96.8
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	96.58
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	96.34
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	95.95
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	95.82
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	95.63
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	95.59
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	95.23
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	95.03
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	94.95
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	94.87
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	94.79
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	94.01
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	93.92
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	93.87
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	93.83
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	93.71
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	93.3
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	93.13
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	93.06
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	92.16
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	92.04
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	91.29
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	91.05
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	90.72
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	86.03
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	82.76
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	82.39
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	81.24

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=2.9e-16  Score=110.74  Aligned_cols=91  Identities=16%  Similarity=0.216  Sum_probs=83.8

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS   81 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v   81 (136)
                      |+.||.|.+  ||.++++...++.+|..     .|.+++|+|++.+|++++.||.|++||+.+++.+.++.+|.+.|+++
T Consensus       223 ~~~d~~i~~--~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~  295 (317)
T d1vyhc1         223 GSRDKTIKM--WDVSTGMCLMTLVGHDN-----WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSL  295 (317)
T ss_dssp             EETTSEEEE--EETTTTEEEEEEECCSS-----CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEE
T ss_pred             ccCCCEEEE--EECCCCcEEEEEeCCCC-----CEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEE
Confidence            567888877  78888999999999999     99999999999999999999999999999999999999999999999


Q ss_pred             EEccCCCEEEEEEccccc
Q 041215           82 TFNTDGSIFAYSVCYDWS   99 (136)
Q Consensus        82 ~~sp~~~~l~s~~~dd~~   99 (136)
                      +|+|++++|++|+.|...
T Consensus       296 ~~s~~~~~l~s~s~Dg~i  313 (317)
T d1vyhc1         296 DFHKTAPYVVTGSVDQTV  313 (317)
T ss_dssp             EECSSSSCEEEEETTSEE
T ss_pred             EEcCCCCEEEEEeCCCeE
Confidence            999999999999887643

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.57  E-value=7.9e-15  Score=109.46  Aligned_cols=95  Identities=17%  Similarity=0.236  Sum_probs=78.5

Q ss_pred             CCceeceEEEEEeeCCCCcceeEEE------eeeCCCCccceeEEEEeCCCCEEEEEcCCC---cEEEEeCCCcceeeec
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTFK------CHRDGSEIYSVNSLNFHPIHHTFATAGSDG---AFNFWDKDSKQRLKAM   71 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l~------~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg---~v~vwd~~~~~~~~~~   71 (136)
                      +||.||+|++  ||..++++...+.      +|..     +|.+++|+|++.+|++++.|+   .|++||+.++..+..+
T Consensus       200 sgs~Dg~i~i--wd~~~~~~~~~~~~~~~l~~h~~-----~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l  272 (393)
T d1sq9a_         200 TGFNNGTVQI--SELSTLRPLYNFESQHSMINNSN-----SIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSL  272 (393)
T ss_dssp             EECTTSEEEE--EETTTTEEEEEEECCC---CCCC-----CEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEE
T ss_pred             EEeCCCcEEE--Eeecccccccccccccccccccc-----eEEEcccccccceeeeecCCCCcceeeecccccceeeeee
Confidence            3788999988  7777777665554      4666     999999999999999999886   4899999998777665


Q ss_pred             c-------------cCCCceeEEEEccCCCEEEEEEcccccccc
Q 041215           72 S-------------RCGQPIPCSTFNTDGSIFAYSVCYDWSKGA  102 (136)
Q Consensus        72 ~-------------~h~~~v~~v~~sp~~~~l~s~~~dd~~~~~  102 (136)
                      .             +|.+.|++|+|+|++++|++|+.|...+.-
T Consensus       273 ~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vW  316 (393)
T d1sq9a_         273 SVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFW  316 (393)
T ss_dssp             CBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred             ccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEE
Confidence            4             799999999999999999999887755433

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.54  E-value=8.8e-15  Score=104.69  Aligned_cols=90  Identities=17%  Similarity=0.235  Sum_probs=77.3

Q ss_pred             CceeceEEEEEeeCCCCcceeEEE--eeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCcee
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFK--CHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIP   79 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~--~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~   79 (136)
                      |+.||.+.+  ||.+.......+.  .+..     .|.+++|+|++.+|++++.||.|++||+.++..+..+.+|.++|+
T Consensus       244 ~s~d~~i~~--~~~~~~~~~~~~~~~~~~~-----~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~  316 (340)
T d1tbga_         244 GSDDATCRL--FDLRADQELMTYSHDNIIC-----GITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVS  316 (340)
T ss_dssp             EETTSCEEE--EETTTTEEEEEECCTTCCS-----CEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE
T ss_pred             EeCCCeEEE--EeecccccccccccccccC-----ceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEE
Confidence            577888888  6666666655543  3344     799999999999999999999999999999999999999999999


Q ss_pred             EEEEccCCCEEEEEEcccc
Q 041215           80 CSTFNTDGSIFAYSVCYDW   98 (136)
Q Consensus        80 ~v~~sp~~~~l~s~~~dd~   98 (136)
                      +|+|+|++.+|++|+.|..
T Consensus       317 ~l~~s~d~~~l~s~s~Dg~  335 (340)
T d1tbga_         317 CLGVTDDGMAVATGSWDSF  335 (340)
T ss_dssp             EEEECTTSSCEEEEETTSC
T ss_pred             EEEEeCCCCEEEEEccCCE
Confidence            9999999999999887764

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.51  E-value=6.1e-14  Score=100.22  Aligned_cols=76  Identities=13%  Similarity=0.249  Sum_probs=70.8

Q ss_pred             cceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEcccc
Q 041215           19 SKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDW   98 (136)
Q Consensus        19 ~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd~   98 (136)
                      ....+|++|.+     +|.+++|+|++.+|++|+.||.|++||+.++..+..+..|..+|.+++|+|++.++++|+.|..
T Consensus        46 ~~~~tL~GH~~-----~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~  120 (340)
T d1tbga_          46 RTRRTLRGHLA-----KIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI  120 (340)
T ss_dssp             CEEEEECCCSS-----CEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCC
T ss_pred             eeeEEECCCCC-----CEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccce
Confidence            45678999999     9999999999999999999999999999999999999999999999999999999999887765


Q ss_pred             c
Q 041215           99 S   99 (136)
Q Consensus        99 ~   99 (136)
                      .
T Consensus       121 i  121 (340)
T d1tbga_         121 C  121 (340)
T ss_dssp             E
T ss_pred             e
Confidence            4

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.50  E-value=7.1e-14  Score=103.45  Aligned_cols=93  Identities=14%  Similarity=0.231  Sum_probs=77.9

Q ss_pred             CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcce--eeecccCCCce
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQR--LKAMSRCGQPI   78 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~--~~~~~~h~~~v   78 (136)
                      +|+.||.|.+|..+.........|++|.+     +|.+++|+|++.+|++++.|+.|++||+.++..  ...+..|...|
T Consensus        24 ~~~~~~~i~iw~~~~~~~~~~~~l~gH~~-----~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v   98 (371)
T d1k8kc_          24 ICPNNHEVHIYEKSGNKWVQVHELKEHNG-----QVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAA   98 (371)
T ss_dssp             EECSSSEEEEEEEETTEEEEEEEEECCSS-----CEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCE
T ss_pred             EEeCCCEEEEEECCCCCEEEEEEecCCCC-----CEEEEEECCCCCEEEEEECCCeEEEEeecccccccccccccccccc
Confidence            36788999885554444456788899999     999999999999999999999999999987643  34556788999


Q ss_pred             eEEEEccCCCEEEEEEcccc
Q 041215           79 PCSTFNTDGSIFAYSVCYDW   98 (136)
Q Consensus        79 ~~v~~sp~~~~l~s~~~dd~   98 (136)
                      .+++|+|+++.+++++.+..
T Consensus        99 ~~i~~~p~~~~l~~~s~d~~  118 (371)
T d1k8kc_          99 RCVRWAPNEKKFAVGSGSRV  118 (371)
T ss_dssp             EEEEECTTSSEEEEEETTSS
T ss_pred             cccccccccccceeecccCc
Confidence            99999999999999988764

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.48  E-value=2.1e-13  Score=96.50  Aligned_cols=101  Identities=33%  Similarity=0.581  Sum_probs=77.1

Q ss_pred             CceeceEEEEEeeCCC----CcceeEEEeeeC----CCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeeccc
Q 041215            2 GSIEGRVGVHHLDDSQ----QSKNFTFKCHRD----GSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSR   73 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~----~~~~~~l~~h~~----~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~   73 (136)
                      ++.||.+.++.++...    ......+..+..    ..+.+.|++++|+|++.+|++|+.||.|++||+.++..+.++..
T Consensus       212 ~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~  291 (342)
T d1yfqa_         212 SSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAK  291 (342)
T ss_dssp             EETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC
T ss_pred             ecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecC
Confidence            5678999998876542    122233332221    34556899999999999999999999999999999998888865


Q ss_pred             CCCceeEEEEccCCCEEEEEEccccccccc
Q 041215           74 CGQPIPCSTFNTDGSIFAYSVCYDWSKGAE  103 (136)
Q Consensus        74 h~~~v~~v~~sp~~~~l~s~~~dd~~~~~~  103 (136)
                      + ..+..++|+|++.++++|++||+.+...
T Consensus       292 ~-~~~~~~~~s~~~~~l~~a~sdd~~~~~~  320 (342)
T d1yfqa_         292 F-NEDSVVKIACSDNILCLATSDDTFKTNA  320 (342)
T ss_dssp             C-SSSEEEEEEECSSEEEEEEECTHHHHCS
T ss_pred             C-CCCEEEEEEeCCCEEEEEEcCCcEEEee
Confidence            4 3556788999999999999999866443

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.46  E-value=2.7e-13  Score=98.70  Aligned_cols=93  Identities=20%  Similarity=0.275  Sum_probs=80.9

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecc-------cC
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMS-------RC   74 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~-------~h   74 (136)
                      |+.||.|.+  ||.++++....+..|..     +|.++.|+|++.+|++++.|+.|++||..++..+..+.       +|
T Consensus       165 gs~d~~i~i--~d~~~~~~~~~~~~~~~-----~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h  237 (311)
T d1nr0a1         165 GSDDNTVAI--FEGPPFKFKSTFGEHTK-----FVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAH  237 (311)
T ss_dssp             EETTSCEEE--EETTTBEEEEEECCCSS-----CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSS
T ss_pred             ccccccccc--ccccccccccccccccc-----cccccccCccccccccccccccccccccccccccccccccccccccc
Confidence            577899887  78888899999999999     99999999999999999999999999999877665543       57


Q ss_pred             CCceeEEEEccCCCEEEEEEccccccc
Q 041215           75 GQPIPCSTFNTDGSIFAYSVCYDWSKG  101 (136)
Q Consensus        75 ~~~v~~v~~sp~~~~l~s~~~dd~~~~  101 (136)
                      .+.|.+++|+|++++|++|+.|...+.
T Consensus       238 ~~~V~~~~~s~~~~~l~tgs~Dg~v~i  264 (311)
T d1nr0a1         238 SGSVFGLTWSPDGTKIASASADKTIKI  264 (311)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             cccccccccCCCCCEEEEEeCCCeEEE
Confidence            889999999999999999988774433

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.45  E-value=3.2e-13  Score=94.77  Aligned_cols=75  Identities=17%  Similarity=0.415  Sum_probs=69.4

Q ss_pred             CcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEccc
Q 041215           18 QSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYD   97 (136)
Q Consensus        18 ~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd   97 (136)
                      ....++|++|.+     +|++++|+|++.+|++++.|+.|++||+.++..+.++.+|...|.+++|+|++.+++++..+.
T Consensus         7 ~~~~~~L~GH~~-----~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~   81 (317)
T d1vyhc1           7 PPEKYALSGHRS-----PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADM   81 (317)
T ss_dssp             SSCSCEEECCSS-----CEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             CCccEEEcCCCC-----CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccc
Confidence            345678999999     999999999999999999999999999999999999999999999999999999999887655

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.42  E-value=8.1e-13  Score=96.12  Aligned_cols=81  Identities=10%  Similarity=0.153  Sum_probs=71.4

Q ss_pred             EEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCccee--eecccCCCceeEEEEccCCC
Q 041215           11 HHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRL--KAMSRCGQPIPCSTFNTDGS   88 (136)
Q Consensus        11 ~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~--~~~~~h~~~v~~v~~sp~~~   88 (136)
                      ..||..+......+.+|..     .|.+++|+|++++|++|+.|+.|++||+.++...  ..+..|..+|.+|+|+|++.
T Consensus        41 ~i~~~~~~~~~~~~~~H~~-----~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~  115 (311)
T d1nr0a1          41 YTVPVGSLTDTEIYTEHSH-----QTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESK  115 (311)
T ss_dssp             EEEETTCSSCCEEECCCSS-----CEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSC
T ss_pred             EEEECCCCceeEEEcCCCC-----CEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCcccccccccccc
Confidence            4478888888888999999     9999999999999999999999999999886543  55778999999999999999


Q ss_pred             EEEEEEcc
Q 041215           89 IFAYSVCY   96 (136)
Q Consensus        89 ~l~s~~~d   96 (136)
                      ++++++.+
T Consensus       116 ~l~~~~~~  123 (311)
T d1nr0a1         116 RIAAVGEG  123 (311)
T ss_dssp             EEEEEECC
T ss_pred             cccccccc
Confidence            99988653

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=8.4e-13  Score=96.13  Aligned_cols=88  Identities=18%  Similarity=0.223  Sum_probs=74.9

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS   81 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v   81 (136)
                      |+.||.+.+  ||.+.+... ....|..     .|.+++|+|++.+|++++.|+.|++||+.++..+..+ .|...|.++
T Consensus       242 ~~~d~~i~i--~d~~~~~~~-~~~~~~~-----~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~-~~~~~v~~~  312 (337)
T d1gxra_         242 GMESSNVEV--LHVNKPDKY-QLHLHES-----CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSC  312 (337)
T ss_dssp             EETTSCEEE--EETTSSCEE-EECCCSS-----CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEE
T ss_pred             ecccccccc--ccccccccc-ccccccc-----ccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEc-cCCCCEEEE
Confidence            567888887  666655543 4456888     9999999999999999999999999999999888776 577999999


Q ss_pred             EEccCCCEEEEEEcccc
Q 041215           82 TFNTDGSIFAYSVCYDW   98 (136)
Q Consensus        82 ~~sp~~~~l~s~~~dd~   98 (136)
                      +|+|++++|++|+.|..
T Consensus       313 ~~s~d~~~l~t~s~D~~  329 (337)
T d1gxra_         313 DISVDDKYIVTGSGDKK  329 (337)
T ss_dssp             EECTTSCEEEEEETTSC
T ss_pred             EEeCCCCEEEEEeCCCe
Confidence            99999999999887763

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.38  E-value=1.1e-12  Score=93.19  Aligned_cols=75  Identities=17%  Similarity=0.214  Sum_probs=65.4

Q ss_pred             CcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecc-cCCCceeEEEEccCCCEEEEEEcc
Q 041215           18 QSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMS-RCGQPIPCSTFNTDGSIFAYSVCY   96 (136)
Q Consensus        18 ~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~-~h~~~v~~v~~sp~~~~l~s~~~d   96 (136)
                      |....++++|.+     +|++++|+|++++|++|+.|+.|++||+.++..+..+. .|...|.+++|+|++.++++ +.|
T Consensus         2 g~~~~~~~GH~~-----~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~-~~d   75 (299)
T d1nr0a2           2 GSIDQVRYGHNK-----AITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTV-SWD   75 (299)
T ss_dssp             TEEEEEECCCSS-----CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEE-ETT
T ss_pred             CccceEcCCCCC-----CcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecc-cce
Confidence            456678899999     99999999999999999999999999999998888775 68899999999999987664 455


Q ss_pred             cc
Q 041215           97 DW   98 (136)
Q Consensus        97 d~   98 (136)
                      +.
T Consensus        76 ~~   77 (299)
T d1nr0a2          76 DH   77 (299)
T ss_dssp             TE
T ss_pred             ee
Confidence            53

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.37  E-value=1.1e-12  Score=95.87  Aligned_cols=93  Identities=19%  Similarity=0.261  Sum_probs=74.0

Q ss_pred             CceeceEEEEEeeCC----------CCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeec
Q 041215            2 GSIEGRVGVHHLDDS----------QQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAM   71 (136)
Q Consensus         2 gs~dG~v~i~~~d~~----------~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~   71 (136)
                      |+.||.+.+|.+...          ..........|..     .|.+++|+|++.+|++++.||.|++||+.+++.+.++
T Consensus       272 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l  346 (388)
T d1erja_         272 GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD-----FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML  346 (388)
T ss_dssp             EETTSEEEEEEC---------------CEEEEEECCSS-----CEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             EECCCcEEEEeccCCccccccccccccceeeecccccc-----eEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEE
Confidence            577899988544321          1122344556777     9999999999999999999999999999999999999


Q ss_pred             ccCCCceeEEEE------ccCCCEEEEEEccccc
Q 041215           72 SRCGQPIPCSTF------NTDGSIFAYSVCYDWS   99 (136)
Q Consensus        72 ~~h~~~v~~v~~------sp~~~~l~s~~~dd~~   99 (136)
                      .+|.+.|.++++      +|++.+|++|+.|...
T Consensus       347 ~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I  380 (388)
T d1erja_         347 QGHRNSVISVAVANGSSLGPEYNVFATGSGDCKA  380 (388)
T ss_dssp             ECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEE
T ss_pred             eCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEE
Confidence            999999999975      5688999998877643

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.34  E-value=3e-13  Score=100.73  Aligned_cols=89  Identities=20%  Similarity=0.306  Sum_probs=73.9

Q ss_pred             CceeceE-EEEEeeCCCCcceeEEE-------------eeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcce
Q 041215            2 GSIEGRV-GVHHLDDSQQSKNFTFK-------------CHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQR   67 (136)
Q Consensus         2 gs~dG~v-~i~~~d~~~~~~~~~l~-------------~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~   67 (136)
                      ||.|++. .|.+||..++....++.             +|.+     .|.+++|+|++++|++++.|+.|++||+.++++
T Consensus       249 gs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~-----~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~  323 (393)
T d1sq9a_         249 AHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS-----WVMSLSFNDSGETLCSAGWDGKLRFWDVKTKER  323 (393)
T ss_dssp             EEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSS-----CEEEEEECSSSSEEEEEETTSEEEEEETTTTEE
T ss_pred             ecCCCCcceeeecccccceeeeeeccccccccceeeeecccC-----ceeeeccCCCCCeeEEECCCCEEEEEECCCCCE
Confidence            5666652 24448888887777764             5777     999999999999999999999999999999999


Q ss_pred             eeecccCCCcee----EEEEccCCCEEEEEEc
Q 041215           68 LKAMSRCGQPIP----CSTFNTDGSIFAYSVC   95 (136)
Q Consensus        68 ~~~~~~h~~~v~----~v~~sp~~~~l~s~~~   95 (136)
                      +.++.+|.++|.    .++|+|++..+++++.
T Consensus       324 ~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~  355 (393)
T d1sq9a_         324 ITTLNMHCDDIEIEEDILAVDEHGDSLAEPGV  355 (393)
T ss_dssp             EEEEECCGGGCSSGGGCCCBCTTSCBCSSCCE
T ss_pred             EEEECCcCCcccCCccEEEECCCCCEEEEccc
Confidence            999999988876    5889999988776543

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.32  E-value=8.1e-12  Score=88.58  Aligned_cols=94  Identities=13%  Similarity=0.089  Sum_probs=74.4

Q ss_pred             CceeceEEEEEeeCCCCccee-EEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCccee---eecccCCCc
Q 041215            2 GSIEGRVGVHHLDDSQQSKNF-TFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRL---KAMSRCGQP   77 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~-~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~---~~~~~h~~~   77 (136)
                      |+.||.+.+  ||.+++.... ....|..     .|.+++|+|++.+|++++.|+.|++||+.++...   ..+..|..+
T Consensus       154 g~~dg~i~~--~d~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~  226 (299)
T d1nr0a2         154 GGQDSKVHV--YKLSGASVSEVKTIVHPA-----EITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAK  226 (299)
T ss_dssp             EETTSEEEE--EEEETTEEEEEEEEECSS-----CEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSC
T ss_pred             ccccccccc--cccccccccccccccccc-----cccccccccccccccccccccccccccccccccccccccccccccc
Confidence            567888888  5555444332 3346778     9999999999999999999999999999876544   455678899


Q ss_pred             eeEEEEccCCCEEEEEEcccccccc
Q 041215           78 IPCSTFNTDGSIFAYSVCYDWSKGA  102 (136)
Q Consensus        78 v~~v~~sp~~~~l~s~~~dd~~~~~  102 (136)
                      |++++|+|++.+|++|+.|......
T Consensus       227 v~~l~~s~~~~~l~sgs~dg~i~iw  251 (299)
T d1nr0a2         227 VACVSWSPDNVRLATGSLDNSVIVW  251 (299)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             cccccccccccceEEEcCCCEEEEE
Confidence            9999999999999999887754333

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.29  E-value=8.6e-12  Score=92.00  Aligned_cols=94  Identities=7%  Similarity=0.096  Sum_probs=75.7

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcce----eeecccCCCc
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQR----LKAMSRCGQP   77 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~----~~~~~~h~~~   77 (136)
                      |+.||+|.+|.++.........+..|..     .|.+++|+|+++.|++++.|+.+++|++.....    ......|...
T Consensus        69 ~s~D~~i~vWd~~~~~~~~~~~~~~~~~-----~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~  143 (371)
T d1k8kc_          69 CGTDRNAYVWTLKGRTWKPTLVILRINR-----AARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRST  143 (371)
T ss_dssp             EETTSCEEEEEEETTEEEEEEECCCCSS-----CEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSC
T ss_pred             EECCCeEEEEeecccccccccccccccc-----cccccccccccccceeecccCcceeeeeecccccccccccccccccc
Confidence            6789999997665544455556667777     999999999999999999999999998775432    2345568899


Q ss_pred             eeEEEEccCCCEEEEEEcccccc
Q 041215           78 IPCSTFNTDGSIFAYSVCYDWSK  100 (136)
Q Consensus        78 v~~v~~sp~~~~l~s~~~dd~~~  100 (136)
                      |.+++|+|++.+|++|+.|...+
T Consensus       144 v~~v~~~p~~~~l~s~s~D~~v~  166 (371)
T d1k8kc_         144 VLSLDWHPNSVLLAAGSCDFKCR  166 (371)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEE
T ss_pred             cccccccccccceeccccCcEEE
Confidence            99999999999999988776443

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=6e-12  Score=89.15  Aligned_cols=76  Identities=12%  Similarity=0.142  Sum_probs=65.1

Q ss_pred             CCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEc
Q 041215           16 SQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVC   95 (136)
Q Consensus        16 ~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~   95 (136)
                      .+.++..+|++|..     .|.+ +++++|++|++|+.|+.|++||+.+++++.++.+|.+.|.+++|+++  ++++|+.
T Consensus         4 ~~~~~~~~l~GH~~-----~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~   75 (342)
T d2ovrb2           4 GELKSPKVLKGHDD-----HVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGST   75 (342)
T ss_dssp             SCCCCCEEEECSTT-----SCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEET
T ss_pred             CCCCcCEEECCcCC-----ceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--cccccee
Confidence            44567788999999     8854 36667899999999999999999999999999999999999999875  8888877


Q ss_pred             cccc
Q 041215           96 YDWS   99 (136)
Q Consensus        96 dd~~   99 (136)
                      |...
T Consensus        76 D~~~   79 (342)
T d2ovrb2          76 DRTL   79 (342)
T ss_dssp             TSCE
T ss_pred             cccc
Confidence            7643

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.27  E-value=1.2e-11  Score=87.36  Aligned_cols=90  Identities=13%  Similarity=0.213  Sum_probs=71.9

Q ss_pred             CCceeceEEEEEeeCCCCccee-EEEeeeCCCCccceeEEEEeCCC----------CEEEEEcCCCcEEEEeCCC-ccee
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNF-TFKCHRDGSEIYSVNSLNFHPIH----------HTFATAGSDGAFNFWDKDS-KQRL   68 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~-~l~~h~~~~~~~~v~~l~~~p~~----------~~l~s~~~dg~v~vwd~~~-~~~~   68 (136)
                      +|+.||.|.+  ||..++.... .+..|..     +|.+++|+|.+          .+|++++.|+.|++||+.+ ...+
T Consensus       179 ~g~~dg~i~i--~d~~~~~~~~~~~~~h~~-----~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~  251 (287)
T d1pgua2         179 AGDVMGKILL--YDLQSREVKTSRWAFRTS-----KINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKII  251 (287)
T ss_dssp             EEETTSCEEE--EETTTTEEEECCSCCCSS-----CEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCE
T ss_pred             cccccccccc--eeeccccccccccccccc-----ccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEE
Confidence            3677899887  7777665543 3567888     99999998754          5899999999999999976 5567


Q ss_pred             eecccCCCceeEEEEccCCCEEEEEEcccc
Q 041215           69 KAMSRCGQPIPCSTFNTDGSIFAYSVCYDW   98 (136)
Q Consensus        69 ~~~~~h~~~v~~v~~sp~~~~l~s~~~dd~   98 (136)
                      ..+.+|...|++++|+|++ .+++++.|.-
T Consensus       252 ~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~  280 (287)
T d1pgua2         252 KALNAHKDGVNNLLWETPS-TLVSSGADAC  280 (287)
T ss_dssp             EETTSSTTCEEEEEEEETT-EEEEEETTSC
T ss_pred             EEeCCCCCCeEEEEECCCC-EEEEEECCCe
Confidence            7788999999999999987 5777777653

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.25  E-value=4.1e-11  Score=87.35  Aligned_cols=95  Identities=17%  Similarity=0.154  Sum_probs=76.3

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeC-------------CCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCccee
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRD-------------GSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRL   68 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~-------------~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~   68 (136)
                      |+ ||+|.+  ||..++.....+..+..             ..+...|.+++|+|++.+|++++.|+.|++||...+..+
T Consensus        80 g~-d~~i~i--W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~  156 (388)
T d1erja_          80 GC-NKTTQV--YRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIV  156 (388)
T ss_dssp             EC-BSCEEE--EETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred             Ee-CCeEEE--EEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceecccccccccccccccccc
Confidence            44 888888  66676666655543321             122337999999999999999999999999999999999


Q ss_pred             eecccCCCceeEEEEccCCCEEEEEEccccc
Q 041215           69 KAMSRCGQPIPCSTFNTDGSIFAYSVCYDWS   99 (136)
Q Consensus        69 ~~~~~h~~~v~~v~~sp~~~~l~s~~~dd~~   99 (136)
                      ..+.+|...|.+++|++++..+++++.+...
T Consensus       157 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i  187 (388)
T d1erja_         157 MILQGHEQDIYSLDYFPSGDKLVSGSGDRTV  187 (388)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             cccccccccccccccccccccccccccceee
Confidence            9999999999999999999999988877644

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.4e-11  Score=87.17  Aligned_cols=90  Identities=16%  Similarity=0.217  Sum_probs=68.8

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecc-----cCCC
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMS-----RCGQ   76 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~-----~h~~   76 (136)
                      |+.||.|.+  ||....+....+..+..  +...+.++.++  +.++++++.||.|++||+++++.+.++.     +|..
T Consensus       233 ~s~d~~i~i--wd~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~  306 (342)
T d2ovrb2         233 GNADSTVKI--WDIKTGQCLQTLQGPNK--HQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGG  306 (342)
T ss_dssp             EETTSCEEE--EETTTCCEEEEECSTTS--CSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTC
T ss_pred             EcCCCEEEE--Eecccccccccccccce--eeeceeecccC--CCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCC
Confidence            567888877  66666666666654322  22256666665  5799999999999999999998887664     4678


Q ss_pred             ceeEEEEccCCCEEEEEEccc
Q 041215           77 PIPCSTFNTDGSIFAYSVCYD   97 (136)
Q Consensus        77 ~v~~v~~sp~~~~l~s~~~dd   97 (136)
                      .|++++|+|++.++++|+.|+
T Consensus       307 ~v~~v~~s~~~~~la~g~~dG  327 (342)
T d2ovrb2         307 VVWRIRASNTKLVCAVGSRNG  327 (342)
T ss_dssp             EEEEEEECSSEEEEEEECSSS
T ss_pred             CEEEEEECCCCCEEEEEeCCC
Confidence            899999999999999887665

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.23  E-value=2.3e-11  Score=86.45  Aligned_cols=71  Identities=20%  Similarity=0.215  Sum_probs=60.8

Q ss_pred             ceeEEEeeeCCCCccce-eEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEcccc
Q 041215           20 KNFTFKCHRDGSEIYSV-NSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDW   98 (136)
Q Consensus        20 ~~~~l~~h~~~~~~~~v-~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd~   98 (136)
                      ...+|++|..     .| +|+++  ++++|++|+.|+.|++||+.+++.+.++.+|.++|++|+|+|++ +|++|+.|..
T Consensus         4 ~~~tL~GH~~-----~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~-~l~s~s~D~~   75 (355)
T d1nexb2           4 QRTTLRGHMT-----SVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRT   75 (355)
T ss_dssp             EEEEEECCSS-----SCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTT-EEEEEETTCC
T ss_pred             CcEEECCcCC-----CcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCCC-EEEEEecccc
Confidence            3567899988     76 55555  57899999999999999999999999999999999999999865 7888877664

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=5.9e-11  Score=86.12  Aligned_cols=95  Identities=14%  Similarity=0.230  Sum_probs=81.0

Q ss_pred             CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC   80 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~   80 (136)
                      +|+.||.|.+|.++.........+..|..     .+.+++|+|++..+++++.++.|.+|++.++........|...|.+
T Consensus       114 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~  188 (337)
T d1gxra_         114 VGGEASTLSIWDLAAPTPRIKAELTSSAP-----ACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASC  188 (337)
T ss_dssp             EEESSSEEEEEECCCC--EEEEEEECSSS-----CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred             Eeecccccccccccccccccccccccccc-----cccccccccccccccccccccccccccccccccccccccccccccc
Confidence            36789999996554555666777888888     9999999999999999999999999999999888888899999999


Q ss_pred             EEEccCCCEEEEEEcccccc
Q 041215           81 STFNTDGSIFAYSVCYDWSK  100 (136)
Q Consensus        81 v~~sp~~~~l~s~~~dd~~~  100 (136)
                      ++|++++..+++++.+....
T Consensus       189 l~~s~~~~~~~~~~~d~~v~  208 (337)
T d1gxra_         189 IDISNDGTKLWTGGLDNTVR  208 (337)
T ss_dssp             EEECTTSSEEEEEETTSEEE
T ss_pred             cccccccccccccccccccc
Confidence            99999999999988776543

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.22  E-value=3.2e-11  Score=87.60  Aligned_cols=96  Identities=20%  Similarity=0.175  Sum_probs=75.0

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCC-CEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIH-HTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC   80 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~   80 (136)
                      |+.||.+.+  ||....+....+..+..  +...|.+++|+|++ .+|++++.|+.|++||+.++..+..+.+|..++.+
T Consensus       178 ~~~d~~v~~--~d~~~~~~~~~~~~~~~--~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~  253 (325)
T d1pgua1         178 VGDDGSVVF--YQGPPFKFSASDRTHHK--QGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQG  253 (325)
T ss_dssp             EETTTEEEE--EETTTBEEEEEECSSSC--TTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCS
T ss_pred             eeccccccc--ccccccccceecccccC--CCCccEEeeeccccceeccccccccceeeeeecccccccccccccccccc
Confidence            567888887  77666665555443321  22279999999975 89999999999999999999999999999888877


Q ss_pred             EEEc---cCCCEEEEEEccccccc
Q 041215           81 STFN---TDGSIFAYSVCYDWSKG  101 (136)
Q Consensus        81 v~~s---p~~~~l~s~~~dd~~~~  101 (136)
                      +.|+   |++.+|++++.|...+.
T Consensus       254 ~~~s~~~~dg~~l~s~s~D~~i~i  277 (325)
T d1pgua1         254 GIFALSWLDSQKFATVGADATIRV  277 (325)
T ss_dssp             CEEEEEESSSSEEEEEETTSEEEE
T ss_pred             ceeeeeccCCCEEEEEeCCCeEEE
Confidence            7776   78899999988775443

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.19  E-value=2.1e-11  Score=91.78  Aligned_cols=88  Identities=9%  Similarity=0.021  Sum_probs=71.6

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceee--e---cccCCC
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLK--A---MSRCGQ   76 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~--~---~~~h~~   76 (136)
                      ++.||+|.+  ||..+++.+.++..+ .     .+..++|+|||++|++++.|+.|++||+.++....  +   ..+|..
T Consensus        38 ~~~dg~v~v--wD~~t~~~~~~l~~g-~-----~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~  109 (426)
T d1hzua2          38 LRDAGQIAL--VDGDSKKIVKVIDTG-Y-----AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARS  109 (426)
T ss_dssp             ETTTTEEEE--EETTTCSEEEEEECC-S-----SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEE
T ss_pred             EcCCCEEEE--EECCCCcEEEEEeCC-C-----CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcc
Confidence            456889988  899999999999865 4     67899999999999999999999999999876432  2   235666


Q ss_pred             ceeEEEEccCCCEEEEEEccc
Q 041215           77 PIPCSTFNTDGSIFAYSVCYD   97 (136)
Q Consensus        77 ~v~~v~~sp~~~~l~s~~~dd   97 (136)
                      .+.+++|+|||+++++++.++
T Consensus       110 ~~~s~~~spDG~~l~v~~~~~  130 (426)
T d1hzua2         110 VESSKFKGYEDRYTIAGAYWP  130 (426)
T ss_dssp             EEECCSTTCTTTEEEEEEEES
T ss_pred             eEEeeeecCCCCEEEEeecCC
Confidence            777888999999887666544

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.14  E-value=1.4e-10  Score=82.34  Aligned_cols=91  Identities=10%  Similarity=0.043  Sum_probs=74.8

Q ss_pred             CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccC--CCce
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRC--GQPI   78 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h--~~~v   78 (136)
                      +|+.||+|++  ||..+++.+.++.+|.+     +|.+++|+|+ .+|++++.|+.|++|+.............  ...+
T Consensus        28 tgs~Dg~i~v--Wd~~~~~~~~~l~~H~~-----~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~   99 (355)
T d1nexb2          28 TGADDKMIRV--YDSINKKFLLQLSGHDG-----GVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRC   99 (355)
T ss_dssp             EEETTTEEEE--EETTTTEEEEEEECCSS-----CEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred             EEeCCCeEEE--EECCCCcEEEEEECCCC-----CEEEEEEcCC-CEEEEEecccccccccccccccccccccccccccc
Confidence            3788999988  78888999999999999     9999999985 68999999999999999987766554443  3445


Q ss_pred             eEEEEccCCCEEEEEEccccc
Q 041215           79 PCSTFNTDGSIFAYSVCYDWS   99 (136)
Q Consensus        79 ~~v~~sp~~~~l~s~~~dd~~   99 (136)
                      ..+.+++++.++++++.|...
T Consensus       100 ~~~~~~~~~~~~~~~~~d~~i  120 (355)
T d1nexb2         100 LDIVEYKNIKYIVTGSRDNTL  120 (355)
T ss_dssp             EEEEEETTEEEEEEEETTSEE
T ss_pred             cccccccccceeeeecCCCcE
Confidence            567778899999988877644

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.14  E-value=3.4e-11  Score=84.81  Aligned_cols=71  Identities=13%  Similarity=0.216  Sum_probs=57.3

Q ss_pred             eEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCccee---eecccCCCceeEEEEccCC-CEEEEEEccc
Q 041215           22 FTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRL---KAMSRCGQPIPCSTFNTDG-SIFAYSVCYD   97 (136)
Q Consensus        22 ~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~---~~~~~h~~~v~~v~~sp~~-~~l~s~~~dd   97 (136)
                      ...++|+.     .|++|+|+|++.+|++++.|+.|++||+..+...   ....+|.++|.+++|+|++ .++++|+.|.
T Consensus         5 ~~~~~h~d-----~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~   79 (342)
T d1yfqa_           5 QIEQAPKD-----YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQG   79 (342)
T ss_dssp             ECSSCCSS-----CEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTS
T ss_pred             EcCCCCCC-----CEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEccccc
Confidence            34467888     9999999999999999999999999998765332   3334699999999999875 4777777665

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=1.5e-10  Score=79.96  Aligned_cols=61  Identities=13%  Similarity=0.250  Sum_probs=53.8

Q ss_pred             ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEccccc
Q 041215           35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYDWS   99 (136)
Q Consensus        35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd~~   99 (136)
                      .|.|++  +++++|++|+.|+.|++||+.+++++.++.+|.+.|.+|+|  ++.+|++|+.|...
T Consensus        17 ~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i   77 (293)
T d1p22a2          17 GVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTV   77 (293)
T ss_dssp             CEEEEE--CCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCE
T ss_pred             CEEEEE--EcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeecccccccc
Confidence            788765  57899999999999999999999999999999999999988  57799998877643

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.07  E-value=7.7e-10  Score=77.76  Aligned_cols=86  Identities=14%  Similarity=0.126  Sum_probs=65.6

Q ss_pred             eEEEEEeeCCCCcceeEEE-eeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceee-ecccCCCceeEEEEc
Q 041215            7 RVGVHHLDDSQQSKNFTFK-CHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLK-AMSRCGQPIPCSTFN   84 (136)
Q Consensus         7 ~v~i~~~d~~~~~~~~~l~-~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~-~~~~h~~~v~~v~~s   84 (136)
                      .+.+  |+.........+. .|..     ++.+++|+|++.+|++++.|+.|++||+.++.... .+..|..+|++++|+
T Consensus       142 ~v~~--~~~~~~~~~~~~~~~~~~-----~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~  214 (287)
T d1pgua2         142 TIQV--FKLSDLEVSFDLKTPLRA-----KPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWK  214 (287)
T ss_dssp             CEEE--EETTEEEEEEECSSCCSS-----CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEEC
T ss_pred             eeee--eeccccceeeeeeeccCC-----ceeEEEeccCccccccccccccccceeecccccccccccccccccceeeec
Confidence            4555  5544333333332 3555     89999999999999999999999999999887654 467899999999998


Q ss_pred             cC----------CCEEEEEEccccc
Q 041215           85 TD----------GSIFAYSVCYDWS   99 (136)
Q Consensus        85 p~----------~~~l~s~~~dd~~   99 (136)
                      |.          +.++++|+.|...
T Consensus       215 p~~~~~~~~~~~~~~l~sgs~D~~i  239 (287)
T d1pgua2         215 PAEKGANEEEIEEDLVATGSLDTNI  239 (287)
T ss_dssp             CCC------CCSCCEEEEEETTSCE
T ss_pred             ccccccccccCCCCeeEeecCCCeE
Confidence            75          4678888877643

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.03  E-value=2.5e-10  Score=86.61  Aligned_cols=89  Identities=13%  Similarity=0.024  Sum_probs=69.6

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcce--eee---cccCCC
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQR--LKA---MSRCGQ   76 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~--~~~---~~~h~~   76 (136)
                      .+.||+|.+  ||..+++.+..+..+ .     .+..++|+|||+++++++.|+.|.+||+.++..  +.+   ...|.+
T Consensus        38 ~~d~g~v~v--~D~~t~~v~~~~~~g-~-----~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~  109 (432)
T d1qksa2          38 LRDAGQIAL--IDGSTYEIKTVLDTG-Y-----AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARS  109 (432)
T ss_dssp             ETTTTEEEE--EETTTCCEEEEEECS-S-----CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEE
T ss_pred             EcCCCEEEE--EECCCCcEEEEEeCC-C-----CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCC
Confidence            356788877  999999999999865 4     688999999999999999999999999987653  222   234556


Q ss_pred             ceeEEEEccCCCEE-EEEEcccc
Q 041215           77 PIPCSTFNTDGSIF-AYSVCYDW   98 (136)
Q Consensus        77 ~v~~v~~sp~~~~l-~s~~~dd~   98 (136)
                      .+.++.|+|||+++ +++..+..
T Consensus       110 ~~~s~~~SpDG~~l~vs~~~~~~  132 (432)
T d1qksa2         110 IETSKMEGWEDKYAIAGAYWPPQ  132 (432)
T ss_dssp             EEECCSTTCTTTEEEEEEEETTE
T ss_pred             eEEecccCCCCCEEEEEcCCCCe
Confidence            77777889999976 55544443

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.99  E-value=1.7e-09  Score=77.34  Aligned_cols=83  Identities=7%  Similarity=-0.062  Sum_probs=65.7

Q ss_pred             eceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCC--cEEEEeCCCcceeeecccCCCceeEEE
Q 041215            5 EGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDG--AFNFWDKDSKQRLKAMSRCGQPIPCST   82 (136)
Q Consensus         5 dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg--~v~vwd~~~~~~~~~~~~h~~~v~~v~   82 (136)
                      +|.|  +.||...+.....  .|..     .|.+++|+|+|+.|+.++.+.  .|++||..++.. ..+..|...|.+++
T Consensus        23 ~g~v--~v~d~~~~~~~~~--~~~~-----~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~-~~~~~~~~~v~~~~   92 (360)
T d1k32a3          23 RGQA--FIQDVSGTYVLKV--PEPL-----RIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA-EKFEENLGNVFAMG   92 (360)
T ss_dssp             TTEE--EEECTTSSBEEEC--SCCS-----CEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCE-EECCCCCCSEEEEE
T ss_pred             CCeE--EEEECCCCcEEEc--cCCC-----CEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcE-EEeeCCCceEEeee
Confidence            4555  4478876665543  5888     999999999998877665443  699999998764 56678999999999


Q ss_pred             EccCCCEEEEEEccc
Q 041215           83 FNTDGSIFAYSVCYD   97 (136)
Q Consensus        83 ~sp~~~~l~s~~~dd   97 (136)
                      |+|+++++++++.+.
T Consensus        93 ~spdg~~l~~~~~~~  107 (360)
T d1k32a3          93 VDRNGKFAVVANDRF  107 (360)
T ss_dssp             ECTTSSEEEEEETTS
T ss_pred             ecccccccceecccc
Confidence            999999999887766

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=5.5e-09  Score=71.90  Aligned_cols=88  Identities=14%  Similarity=0.197  Sum_probs=67.8

Q ss_pred             CCceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215            1 VGSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC   80 (136)
Q Consensus         1 vgs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~   80 (136)
                      +||.||+|++  ||..+++...+|.+|..     .|.+++|  ++++|++++.|+.|++|++..+........+...  .
T Consensus        30 sgs~Dg~i~v--Wd~~~~~~~~~l~~H~~-----~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~--~   98 (293)
T d1p22a2          30 SGLRDNTIKI--WDKNTLECKRILTGHTG-----SVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEA--V   98 (293)
T ss_dssp             EEESSSCEEE--EESSSCCEEEEECCCSS-----CEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSC--E
T ss_pred             EEeCCCeEEE--EECCCCcEEEEEecCCC-----CEeeeec--ccceeecccccccccccccccccccccccccccc--c
Confidence            3788999998  77788999999999999     9998877  5689999999999999999988776655444332  3


Q ss_pred             EEEccCCCEEEEEEccccc
Q 041215           81 STFNTDGSIFAYSVCYDWS   99 (136)
Q Consensus        81 v~~sp~~~~l~s~~~dd~~   99 (136)
                      ..+.+....++++..+...
T Consensus        99 ~~~~~~~~~~~~~~~~~~~  117 (293)
T d1p22a2          99 LHLRFNNGMMVTCSKDRSI  117 (293)
T ss_dssp             EEEECCTTEEEEEETTSCE
T ss_pred             ccccccccceeecccccce
Confidence            3444555666666665543

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.97  E-value=2.4e-09  Score=76.60  Aligned_cols=82  Identities=11%  Similarity=0.012  Sum_probs=70.2

Q ss_pred             EEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCE
Q 041215           10 VHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSI   89 (136)
Q Consensus        10 i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~   89 (136)
                      +++||..+++.. .+..|..     .|.+++|+|++++|++++.++.+.+|++.++.....+..|...+.+++|+|++++
T Consensus        68 v~v~d~~~~~~~-~~~~~~~-----~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~  141 (360)
T d1k32a3          68 LGIYDYRTGKAE-KFEENLG-----NVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRF  141 (360)
T ss_dssp             EEEEETTTCCEE-ECCCCCC-----SEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCE
T ss_pred             EEEEECCCCcEE-EeeCCCc-----eEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceee
Confidence            455887766554 4567888     9999999999999999999999999999999888888889899999999999999


Q ss_pred             EEEEEccc
Q 041215           90 FAYSVCYD   97 (136)
Q Consensus        90 l~s~~~dd   97 (136)
                      |+.+..++
T Consensus       142 la~~~~~~  149 (360)
T d1k32a3         142 IAYGFPLK  149 (360)
T ss_dssp             EEEEEEEC
T ss_pred             eeeecccc
Confidence            98765443

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.96  E-value=2e-09  Score=77.88  Aligned_cols=93  Identities=15%  Similarity=0.108  Sum_probs=70.8

Q ss_pred             CceeceEEEEEeeCCCC------cceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcC--CCcEEEEeCCCcceeeeccc
Q 041215            2 GSIEGRVGVHHLDDSQQ------SKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGS--DGAFNFWDKDSKQRLKAMSR   73 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~------~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~--dg~v~vwd~~~~~~~~~~~~   73 (136)
                      |+.||+|++|.+.....      .....+..|.+     +|.+++|++++..|++++.  ++.+.+|+..++..+..+.+
T Consensus        83 gs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~-----~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (325)
T d1pgua1          83 GDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAG-----PISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSG  157 (325)
T ss_dssp             EETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSS-----CEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCS
T ss_pred             EeCCCCEEEeeecCCcceeeeecccccccccccC-----cEEEEEECCCCCccceeeccccceEEEEeecccccceeeee
Confidence            67899999965533211      11223445667     8999999999988877664  56799999999999999999


Q ss_pred             CCCceeEEEEccCCCE-EEEEEccccc
Q 041215           74 CGQPIPCSTFNTDGSI-FAYSVCYDWS   99 (136)
Q Consensus        74 h~~~v~~v~~sp~~~~-l~s~~~dd~~   99 (136)
                      |...|.+++|+|++.+ +++++.|...
T Consensus       158 h~~~v~~~~~~~~~~~~~~~~~~d~~v  184 (325)
T d1pgua1         158 HSQRINACHLKQSRPMRSMTVGDDGSV  184 (325)
T ss_dssp             CSSCEEEEEECSSSSCEEEEEETTTEE
T ss_pred             cccccccccccccccceEEEeeccccc
Confidence            9999999999999875 5566666544

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.93  E-value=3.4e-09  Score=75.23  Aligned_cols=92  Identities=7%  Similarity=-0.018  Sum_probs=64.4

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEE-EEEcCCCcEEEEeCCCcceeeec---ccCCCc
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTF-ATAGSDGAFNFWDKDSKQRLKAM---SRCGQP   77 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l-~s~~~dg~v~vwd~~~~~~~~~~---~~h~~~   77 (136)
                      ++.|++|.+|.++............+.+     .+..|+|+|||++| +++..|+.|.+|++........+   ..+...
T Consensus        10 ~~~~~~I~v~~~~~~~~l~~~~~~~~~~-----~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~   84 (333)
T d1ri6a_          10 SPESQQIHVWNLNHEGALTLTQVVDVPG-----QVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGS   84 (333)
T ss_dssp             EGGGTEEEEEEECTTSCEEEEEEEECSS-----CCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSC
T ss_pred             CCCCCcEEEEEEcCCCCeEEEEEEcCCC-----CEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCC
Confidence            4578899997665443322222235677     89999999999877 55556899999998765332222   234456


Q ss_pred             eeEEEEccCCCEEEEEEcccc
Q 041215           78 IPCSTFNTDGSIFAYSVCYDW   98 (136)
Q Consensus        78 v~~v~~sp~~~~l~s~~~dd~   98 (136)
                      +..++|+|+|++++++..++.
T Consensus        85 p~~l~~spDg~~l~v~~~~~~  105 (333)
T d1ri6a_          85 LTHISTDHQGQFVFVGSYNAG  105 (333)
T ss_dssp             CSEEEECTTSSEEEEEETTTT
T ss_pred             ceEEEEcCCCCEEeecccCCC
Confidence            788999999999998876553

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.86  E-value=1.1e-08  Score=72.48  Aligned_cols=88  Identities=11%  Similarity=0.024  Sum_probs=69.0

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEe-eeCCCCccceeEEEEeCCCCEE-EEEcCCCcEEEEeCCCcceeeecccCC----
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKC-HRDGSEIYSVNSLNFHPIHHTF-ATAGSDGAFNFWDKDSKQRLKAMSRCG----   75 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~-h~~~~~~~~v~~l~~~p~~~~l-~s~~~dg~v~vwd~~~~~~~~~~~~h~----   75 (136)
                      ++.|++|.+  ||..+++...+++. +..     .+.+++|+|||+++ +++..++.|.+||+.+++.+..+....    
T Consensus        14 ~~~~~~v~v--~D~~t~~~~~t~~~~~~~-----~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~   86 (346)
T d1jmxb_          14 TNYPNNLHV--VDVASDTVYKSCVMPDKF-----GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGE   86 (346)
T ss_dssp             EETTTEEEE--EETTTTEEEEEEECSSCC-----SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTE
T ss_pred             EcCCCEEEE--EECCCCCEEEEEEcCCCC-----CcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccc
Confidence            567888877  89999999888874 455     67899999999765 666788999999999998876654322    


Q ss_pred             --CceeEEEEccCCCEEEEEEcc
Q 041215           76 --QPIPCSTFNTDGSIFAYSVCY   96 (136)
Q Consensus        76 --~~v~~v~~sp~~~~l~s~~~d   96 (136)
                        ..+..++|+|+|+++..+..+
T Consensus        87 ~~~~~~~v~~s~DG~~l~v~~~~  109 (346)
T d1jmxb_          87 VGRSMYSFAISPDGKEVYATVNP  109 (346)
T ss_dssp             EEECSSCEEECTTSSEEEEEEEE
T ss_pred             cCCceEEEEEecCCCEEEEEecC
Confidence              346789999999988776543

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=98.84  E-value=2e-08  Score=70.05  Aligned_cols=87  Identities=9%  Similarity=0.077  Sum_probs=70.5

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEE-EEEcCCCcEEEEeCCCcceeeecccCCCceeE
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTF-ATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPC   80 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l-~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~   80 (136)
                      ++.|++|.+  ||..+++...++.. ..     .+..++|+|+|++| ++++.++.|.+||+.++..+..+..+. .+..
T Consensus         8 ~~~~~~v~v--~D~~t~~~~~~i~~-g~-----~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~   78 (301)
T d1l0qa2           8 NSESDNISV--IDVTSNKVTATIPV-GS-----NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQG   78 (301)
T ss_dssp             ETTTTEEEE--EETTTTEEEEEEEC-SS-----SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEE
T ss_pred             ECCCCEEEE--EECCCCeEEEEEEC-CC-----CceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-cccc
Confidence            356788877  89899988888764 34     56889999999866 577788999999999999888887664 5689


Q ss_pred             EEEccCCCEEEEEEccc
Q 041215           81 STFNTDGSIFAYSVCYD   97 (136)
Q Consensus        81 v~~sp~~~~l~s~~~dd   97 (136)
                      ++|++++..++.++.++
T Consensus        79 ~~~~~~~~~~~~~~~~~   95 (301)
T d1l0qa2          79 VAVSPDGKQVYVTNMAS   95 (301)
T ss_dssp             EEECTTSSEEEEEETTT
T ss_pred             ccccccccccccccccc
Confidence            99999999777666555

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.83  E-value=6.2e-09  Score=73.57  Aligned_cols=90  Identities=11%  Similarity=0.023  Sum_probs=70.4

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEE-EEEcCCCcEEEEeCCCcceeeecccCC-----
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTF-ATAGSDGAFNFWDKDSKQRLKAMSRCG-----   75 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l-~s~~~dg~v~vwd~~~~~~~~~~~~h~-----   75 (136)
                      ++.|++|.+  ||..+++....+..+..   ...+..++|+|+|+++ ++++.++.|.+||+.+++.+..+..+.     
T Consensus         7 ~~~d~~v~v--~D~~s~~~~~~i~~~~~---~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~   81 (337)
T d1pbyb_           7 PARPDKLVV--IDTEKMAVDKVITIADA---GPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EETTTEEEE--EETTTTEEEEEEECTTC---TTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             EcCCCEEEE--EECCCCeEEEEEECCCC---CCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence            577899988  89999988888875432   0157889999999876 677788999999999998887765542     


Q ss_pred             CceeEEEEccCCCEEEEEEcc
Q 041215           76 QPIPCSTFNTDGSIFAYSVCY   96 (136)
Q Consensus        76 ~~v~~v~~sp~~~~l~s~~~d   96 (136)
                      ..+..++|+|++..++++..+
T Consensus        82 ~~~~~v~~s~dg~~l~~~~~~  102 (337)
T d1pbyb_          82 KSLFGAALSPDGKTLAIYESP  102 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEE
T ss_pred             cceeeEEEcCCCcEEEEeecC
Confidence            345689999999988877543

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.51  E-value=2.2e-07  Score=69.17  Aligned_cols=84  Identities=11%  Similarity=0.110  Sum_probs=62.1

Q ss_pred             eeceEEEEEeeC-----CCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEE-------EcCCCcEEEEeCCCcceeeec
Q 041215            4 IEGRVGVHHLDD-----SQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFAT-------AGSDGAFNFWDKDSKQRLKAM   71 (136)
Q Consensus         4 ~dG~v~i~~~d~-----~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s-------~~~dg~v~vwd~~~~~~~~~~   71 (136)
                      .|+.+..+..+.     ...+....+.+|..     .+..++|+|++.+|+.       ++.+++|++||+.+++...++
T Consensus       274 ~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~-----~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~  348 (426)
T d1hzua2         274 GDGSISLIGTDPKNHPQYAWKKVAELQGQGG-----GSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQV  348 (426)
T ss_dssp             TTCEEEEEECCTTTCTTTBTSEEEEEECSSS-----CCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEE
T ss_pred             CCceEEEeeccccccccccceEeEEEecCCC-----ceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEE
Confidence            456665533322     12466778888988     9999999999998884       445789999999988765543


Q ss_pred             ---------ccCCCceeEEEEccCCCEEEE
Q 041215           72 ---------SRCGQPIPCSTFNTDGSIFAY   92 (136)
Q Consensus        72 ---------~~h~~~v~~v~~sp~~~~l~s   92 (136)
                               ..|...|.+++|||||++++.
T Consensus       349 ~~~~~~~~~~~~~~rv~~~~fSpDGk~i~v  378 (426)
T d1hzua2         349 LPIAEWADLGEGAKRVVQPEYNKRGDEVWF  378 (426)
T ss_dssp             ECHHHHHCCCSSCCCEEEEEECSSSSEEEE
T ss_pred             eccchhcccCCCCccEEEEEECCCCCEEEE
Confidence                     245567899999999986643

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.34  E-value=1.1e-06  Score=65.92  Aligned_cols=90  Identities=14%  Similarity=0.156  Sum_probs=67.8

Q ss_pred             eceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcC---------CCcEEEEeCCCcceeeecccCC
Q 041215            5 EGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGS---------DGAFNFWDKDSKQRLKAMSRCG   75 (136)
Q Consensus         5 dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~---------dg~v~vwd~~~~~~~~~~~~h~   75 (136)
                      ||.+  +++|..+++....+..+.-..+...|.++.|+|||++|+.++.         ++.+.+||+.++. +..+..+.
T Consensus        35 ~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~-~~~l~~~~  111 (470)
T d2bgra1          35 ENNI--LVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ-LITEERIP  111 (470)
T ss_dssp             SSCE--EEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE-ECCSSCCC
T ss_pred             CCcE--EEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCc-ccccccCC
Confidence            4555  4588888887665554432223337999999999998877643         4678899999876 56677888


Q ss_pred             CceeEEEEccCCCEEEEEEccc
Q 041215           76 QPIPCSTFNTDGSIFAYSVCYD   97 (136)
Q Consensus        76 ~~v~~v~~sp~~~~l~s~~~dd   97 (136)
                      ..+..+.|||||+.+|.....+
T Consensus       112 ~~~~~~~~SPDG~~ia~~~~~~  133 (470)
T d2bgra1         112 NNTQWVTWSPVGHKLAYVWNND  133 (470)
T ss_dssp             TTEEEEEECSSTTCEEEEETTE
T ss_pred             ccccccccccCcceeeEeeccc
Confidence            9999999999999999876543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.31  E-value=1.2e-06  Score=61.41  Aligned_cols=93  Identities=14%  Similarity=0.036  Sum_probs=70.2

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEc------------CCCcEEEEeCCCcceee
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAG------------SDGAFNFWDKDSKQRLK   69 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~------------~dg~v~vwd~~~~~~~~   69 (136)
                      ++.+|.|.+  ||..+++.+..+..+....+...+..++|+|++..++.+.            .+..+.+||..++....
T Consensus        52 ~~~~~~v~v--~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  129 (337)
T d1pbyb_          52 VNKSESLVK--IDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRK  129 (337)
T ss_dssp             ETTTTEEEE--EETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEE
T ss_pred             ECCCCeEEE--EECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEE
Confidence            345677766  8889999888887664422222566899999998887776            35678899999988877


Q ss_pred             ecccCCCceeEEEEccCCCEEEEEEccc
Q 041215           70 AMSRCGQPIPCSTFNTDGSIFAYSVCYD   97 (136)
Q Consensus        70 ~~~~h~~~v~~v~~sp~~~~l~s~~~dd   97 (136)
                      .+.. ...+++++|+|++.++++++.+.
T Consensus       130 ~~~~-~~~~~~~~~s~dg~~l~~~~~~~  156 (337)
T d1pbyb_         130 AFEA-PRQITMLAWARDGSKLYGLGRDL  156 (337)
T ss_dssp             EEEC-CSSCCCEEECTTSSCEEEESSSE
T ss_pred             eccc-cCCceEEEEcCCCCEEEEEcCCc
Confidence            7754 46688999999999998876544

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.26  E-value=3.3e-06  Score=60.59  Aligned_cols=70  Identities=6%  Similarity=0.085  Sum_probs=57.3

Q ss_pred             EEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCC--EEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccC
Q 041215           11 HHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHH--TFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTD   86 (136)
Q Consensus        11 ~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~--~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~   86 (136)
                      +.||..+++....+. +..     .+..++|+|||+  ++++++.|+.|++||+.+++.+.++..+....+.|++.++
T Consensus       301 ~~~d~~t~~~~~~~~-~~~-----~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         301 TSVTGLVGQTSSQIS-LGH-----DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             EEEECCCCcEEEEec-CCC-----CeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence            447777787777664 555     788999999997  4578889999999999999999999888877888877554

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.26  E-value=4.6e-06  Score=59.23  Aligned_cols=73  Identities=19%  Similarity=0.245  Sum_probs=57.7

Q ss_pred             EEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCC--EEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccC
Q 041215            9 GVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHH--TFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTD   86 (136)
Q Consensus         9 ~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~--~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~   86 (136)
                      .++.||..+++....+.. ..     .+.+++|+|+|+  ++++++.++.|.+||..+++.+.++..+.....+|.+..+
T Consensus       281 ~v~v~d~~t~~~~~~~~~-~~-----~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d~  354 (355)
T d2bbkh_         281 FVVVLDAKTGERLAKFEM-GH-----EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADM  354 (355)
T ss_dssp             EEEEEETTTCCEEEEEEE-EE-----EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEECCCC
T ss_pred             eEEEEeCCCCcEEEEecC-CC-----CEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEEEeCCC
Confidence            455689888888877763 44     678999999996  5667788999999999999999999877666677766554


Q ss_pred             C
Q 041215           87 G   87 (136)
Q Consensus        87 ~   87 (136)
                      |
T Consensus       355 ~  355 (355)
T d2bbkh_         355 G  355 (355)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.25  E-value=9.2e-07  Score=62.21  Aligned_cols=57  Identities=9%  Similarity=-0.076  Sum_probs=48.3

Q ss_pred             EEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecc-cCCCceeEEEEccCCCEEEEEEc
Q 041215           39 LNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMS-RCGQPIPCSTFNTDGSIFAYSVC   95 (136)
Q Consensus        39 l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~-~h~~~v~~v~~sp~~~~l~s~~~   95 (136)
                      ++|++++++|++++.++.|.+||+.+++.+.++. .+...+.+++|+|||+++..+..
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~   59 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN   59 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEET
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEEC
Confidence            4678999999999999999999999999888876 35567889999999998755544

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.21  E-value=3.5e-06  Score=61.08  Aligned_cols=87  Identities=7%  Similarity=-0.155  Sum_probs=66.4

Q ss_pred             ceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEc----------CCCcEEEEeCCCcceeeecc
Q 041215            3 SIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAG----------SDGAFNFWDKDSKQRLKAMS   72 (136)
Q Consensus         3 s~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~----------~dg~v~vwd~~~~~~~~~~~   72 (136)
                      +.+|+..+|.+|..+++.+.++..+..     +  .++|+|+|+.|+..+          .|+.|.+||..+++.+..+.
T Consensus        41 ~~~g~~~~~~~d~~~~~~~~~~~~~~~-----~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~  113 (368)
T d1mdah_          41 YFAGTTENWVSCAGCGVTLGHSLGAFL-----S--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIE  113 (368)
T ss_dssp             TTCSSEEEEEEETTTTEEEEEEEECTT-----C--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEE
T ss_pred             cCCCcceEEEEeCCCCcEEEEEeCCCC-----C--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeec
Confidence            456778888999999998888776544     3  589999998777654          36779999999998887765


Q ss_pred             cCC-------CceeEEEEccCCCEEEEEEcc
Q 041215           73 RCG-------QPIPCSTFNTDGSIFAYSVCY   96 (136)
Q Consensus        73 ~h~-------~~v~~v~~sp~~~~l~s~~~d   96 (136)
                      .+.       .....++|+|||++++.+..+
T Consensus       114 ~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~  144 (368)
T d1mdah_         114 LPDAPRFSVGPRVHIIGNCASSACLLFFLFG  144 (368)
T ss_dssp             ETTSCSCCBSCCTTSEEECTTSSCEEEEECS
T ss_pred             CCccceecccCCccceEECCCCCEEEEEeCC
Confidence            442       233579999999988876543

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.20  E-value=6.2e-07  Score=67.46  Aligned_cols=88  Identities=15%  Similarity=-0.032  Sum_probs=61.7

Q ss_pred             CceeceEEEEEeeCCCCcce--eEEE---eeeCCCCccceeEEEEeCCCCEE-EEEcCCCcEEEEeCCCcceeeecccC-
Q 041215            2 GSIEGRVGVHHLDDSQQSKN--FTFK---CHRDGSEIYSVNSLNFHPIHHTF-ATAGSDGAFNFWDKDSKQRLKAMSRC-   74 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~--~~l~---~h~~~~~~~~v~~l~~~p~~~~l-~s~~~dg~v~vwd~~~~~~~~~~~~h-   74 (136)
                      ++.||.+.+  ||..+++..  ..+.   .|.+     .+....|+|||++| ++++.++.|.+||..++..+..+..+ 
T Consensus        79 ~s~dg~v~~--~d~~t~~~~~~~~i~~~~~~~~-----~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~  151 (432)
T d1qksa2          79 IGRDGKVNM--IDLWMKEPTTVAEIKIGSEARS-----IETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRG  151 (432)
T ss_dssp             EETTSEEEE--EETTSSSCCEEEEEECCSEEEE-----EEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCE
T ss_pred             EcCCCCEEE--EEeeCCCceEEEEEecCCCCCC-----eEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCC
Confidence            567888887  666655433  3322   3445     56667788999865 77888999999999999887766543 


Q ss_pred             ----------CCceeEEEEccCCCEEEEEEcc
Q 041215           75 ----------GQPIPCSTFNTDGSIFAYSVCY   96 (136)
Q Consensus        75 ----------~~~v~~v~~sp~~~~l~s~~~d   96 (136)
                                ......+.++|++..++.+..+
T Consensus       152 ~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~  183 (432)
T d1qksa2         152 MTYDEQEYHPEPRVAAILASHYRPEFIVNVKE  183 (432)
T ss_dssp             ECTTTCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred             ccccceeccCCCceeEEEECCCCCEEEEEEcc
Confidence                      3455678888888876655444

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.19  E-value=8e-06  Score=58.51  Aligned_cols=82  Identities=10%  Similarity=-0.059  Sum_probs=61.1

Q ss_pred             eceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEc----------CCCcEEEEeCCCcceeeecccC
Q 041215            5 EGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAG----------SDGAFNFWDKDSKQRLKAMSRC   74 (136)
Q Consensus         5 dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~----------~dg~v~vwd~~~~~~~~~~~~h   74 (136)
                      ++...+|.+|..+++...++..+..       ..+.|+|||++|+.++          .++.|.+||..+++.+..+..+
T Consensus        44 ~~~~~v~v~D~~tg~~~~~~~~~~~-------~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~  116 (373)
T d2madh_          44 SAIIQQWVLDAGSGSILGHVNGGFL-------PNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELP  116 (373)
T ss_pred             CCCceEEEEECCCCCEEEEEeCCCC-------ccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecC
Confidence            3445567799999999988776544       3789999998887765          3577999999999888777655


Q ss_pred             CCce-------eEEEEccCCCEEEEE
Q 041215           75 GQPI-------PCSTFNTDGSIFAYS   93 (136)
Q Consensus        75 ~~~v-------~~v~~sp~~~~l~s~   93 (136)
                      ....       ..+.|+++++.+...
T Consensus       117 ~~~~~~~~~~~~~~~~s~dg~~~~v~  142 (373)
T d2madh_         117 DAPRFDVGPYSWMNANTPNNADLLFF  142 (373)
T ss_pred             CcceeEeccCCCcEEEEeCCCcEEEE
Confidence            4333       457888888865544

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.16  E-value=5.4e-06  Score=58.85  Aligned_cols=80  Identities=8%  Similarity=-0.092  Sum_probs=60.0

Q ss_pred             EEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEc----------CCCcEEEEeCCCcceeeecccCC---
Q 041215            9 GVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAG----------SDGAFNFWDKDSKQRLKAMSRCG---   75 (136)
Q Consensus         9 ~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~----------~dg~v~vwd~~~~~~~~~~~~h~---   75 (136)
                      .+|.||..+++.+.++..+..       ..++|+|+|++|+..+          .++.|.+||..++..+..+..+.   
T Consensus        29 ~v~v~D~~tg~~~~~~~~g~~-------~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~  101 (355)
T d2bbkh_          29 QQFVIDGEAGRVIGMIDGGFL-------PNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPR  101 (355)
T ss_dssp             EEEEEETTTTEEEEEEEECSS-------CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCC
T ss_pred             eEEEEECCCCcEEEEEECCCC-------CceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcce
Confidence            356699999998888876544       4799999998776543          46889999999998877665432   


Q ss_pred             ----CceeEEEEccCCCEEEEEEc
Q 041215           76 ----QPIPCSTFNTDGSIFAYSVC   95 (136)
Q Consensus        76 ----~~v~~v~~sp~~~~l~s~~~   95 (136)
                          .....++|++++..++.+..
T Consensus       102 ~~~~~~~~~~~~s~dg~~~~v~~~  125 (355)
T d2bbkh_         102 FLVGTYPWMTSLTPDGKTLLFYQF  125 (355)
T ss_dssp             CCBSCCGGGEEECTTSSEEEEEEC
T ss_pred             eecCCCCceEEEecCCCeeEEecC
Confidence                23467899999998876643

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=98.13  E-value=2.2e-05  Score=54.00  Aligned_cols=86  Identities=13%  Similarity=0.120  Sum_probs=66.5

Q ss_pred             ceeceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCC-EEEEEcCCCcEEEEeCCCcceeeecccCCCceeEE
Q 041215            3 SIEGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHH-TFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCS   81 (136)
Q Consensus         3 s~dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~-~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v   81 (136)
                      +.++.|.+  ||..+++....+..+.      .+..+.|++++. .++++..+..+.+|+..++.....+..+ ....++
T Consensus        51 ~~~~~i~v--~d~~t~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  121 (301)
T d1l0qa2          51 AHSNDVSI--IDTATNNVIATVPAGS------SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGL  121 (301)
T ss_dssp             GGGTEEEE--EETTTTEEEEEEECSS------SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEE
T ss_pred             CCCCEEEE--EECCCCceeeeeeccc------cccccccccccccccccccccceeeecccccceeeeecccc-ccceEE
Confidence            45667766  8888888888887654      457899999996 4556666778999999998877777544 567899


Q ss_pred             EEccCCCEEEEEEccc
Q 041215           82 TFNTDGSIFAYSVCYD   97 (136)
Q Consensus        82 ~~sp~~~~l~s~~~dd   97 (136)
                      +|+|++..++.+...+
T Consensus       122 ~~~~dg~~~~~~~~~~  137 (301)
T d1l0qa2         122 ALSPDGKKLYVTNNGD  137 (301)
T ss_dssp             EECTTSSEEEEEETTT
T ss_pred             EeecCCCeeeeeeccc
Confidence            9999999887766655

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=97.78  E-value=0.00012  Score=50.86  Aligned_cols=90  Identities=8%  Similarity=-0.013  Sum_probs=60.9

Q ss_pred             ceeceEEEEEeeCCCCcceeEE-EeeeCCCCccceeEEEEeCCCCEEEEEcC-CCcEEEEeCCCccee--eecccCCCce
Q 041215            3 SIEGRVGVHHLDDSQQSKNFTF-KCHRDGSEIYSVNSLNFHPIHHTFATAGS-DGAFNFWDKDSKQRL--KAMSRCGQPI   78 (136)
Q Consensus         3 s~dG~v~i~~~d~~~~~~~~~l-~~h~~~~~~~~v~~l~~~p~~~~l~s~~~-dg~v~vwd~~~~~~~--~~~~~h~~~v   78 (136)
                      +.|+.|.+|.++.......... ..+..     .+..++|+|+|++|+.++. ++.+.+|+.......  .....+...+
T Consensus        56 ~~d~~i~~~~i~~~~~~~~~~~~~~~~~-----~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  130 (333)
T d1ri6a_          56 RPEFRVLAYRIAPDDGALTFAAESALPG-----SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGC  130 (333)
T ss_dssp             TTTTEEEEEEECTTTCCEEEEEEEECSS-----CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTB
T ss_pred             CCCCeEEEEEEeCCCCcEEEeeecccCC-----CceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccc
Confidence            3478888866654433332221 12333     6778999999998887775 567899987765433  3334566788


Q ss_pred             eEEEEccCCCEEEEEEccc
Q 041215           79 PCSTFNTDGSIFAYSVCYD   97 (136)
Q Consensus        79 ~~v~~sp~~~~l~s~~~dd   97 (136)
                      +++.++|+++.++.+..++
T Consensus       131 ~~v~~s~d~~~~~~~~~~~  149 (333)
T d1ri6a_         131 HSANISPDNRTLWVPALKQ  149 (333)
T ss_dssp             CCCEECTTSSEEEEEEGGG
T ss_pred             eEEEeeecceeeecccccc
Confidence            9999999999888776544

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.66  E-value=6.9e-05  Score=55.72  Aligned_cols=81  Identities=11%  Similarity=0.106  Sum_probs=58.8

Q ss_pred             EEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeeccc-----------------
Q 041215           11 HHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSR-----------------   73 (136)
Q Consensus        11 ~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~-----------------   73 (136)
                      ++||..+++. ..+..+..     .+..+.|+|+|+.++.. .+..+.+|+..++........                 
T Consensus        95 ~l~d~~~~~~-~~l~~~~~-----~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~  167 (470)
T d2bgra1          95 DIYDLNKRQL-ITEERIPN-----NTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEE  167 (470)
T ss_dssp             EEEETTTTEE-CCSSCCCT-----TEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHH
T ss_pred             EEEECCCCcc-cccccCCc-----cccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeee
Confidence            5578776653 34566777     89999999999888875 456799999888765543322                 


Q ss_pred             -CCCceeEEEEccCCCEEEEEEcccc
Q 041215           74 -CGQPIPCSTFNTDGSIFAYSVCYDW   98 (136)
Q Consensus        74 -h~~~v~~v~~sp~~~~l~s~~~dd~   98 (136)
                       ..+....+.|||||+.++....|+-
T Consensus       168 ~~~~~~~~~~wSPDGk~ia~~~~d~~  193 (470)
T d2bgra1         168 EVFSAYSALWWSPNGTFLAYAQFNDT  193 (470)
T ss_dssp             HTSSSSBCEEECTTSSEEEEEEEECT
T ss_pred             eecCCccccEECCCCCccceeEecCC
Confidence             1234466889999999999876653

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.55  E-value=0.00024  Score=50.96  Aligned_cols=92  Identities=10%  Similarity=-0.122  Sum_probs=63.2

Q ss_pred             CceeceEEEEEeeCCCCcceeEEEeeeC--CCCccceeEEEEeCCCCEEEEEc-CCCcEEEEeCCCcceeeecccCC---
Q 041215            2 GSIEGRVGVHHLDDSQQSKNFTFKCHRD--GSEIYSVNSLNFHPIHHTFATAG-SDGAFNFWDKDSKQRLKAMSRCG---   75 (136)
Q Consensus         2 gs~dG~v~i~~~d~~~~~~~~~l~~h~~--~~~~~~v~~l~~~p~~~~l~s~~-~dg~v~vwd~~~~~~~~~~~~h~---   75 (136)
                      |+.|+.|.+  ||..++++...+..+..  .........++|+|||++|+.++ .++.+.+||+.+++.+..+..+.   
T Consensus        92 g~~d~~v~v--~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~  169 (368)
T d1mdah_          92 GKRTDYVEV--FDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFH  169 (368)
T ss_dssp             SSEEEEEEE--ECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCC
T ss_pred             cccCCeEEE--EECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcce
Confidence            456777776  89999888888765432  11111345789999997776554 57899999999988877665443   


Q ss_pred             ----CceeEEEEccCCCEEEEEEc
Q 041215           76 ----QPIPCSTFNTDGSIFAYSVC   95 (136)
Q Consensus        76 ----~~v~~v~~sp~~~~l~s~~~   95 (136)
                          +....+.+++++.++.....
T Consensus       170 ~~~~~~~~~v~~~~Dg~~~~~~~~  193 (368)
T d1mdah_         170 IHPGAAATHYLGSCPASLAASDLA  193 (368)
T ss_dssp             CEEEETTEEECCCCTTSCEEEECC
T ss_pred             EccCCCceEEEEcCCCCEEEEEec
Confidence                23344677888887666543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.80  E-value=0.03  Score=37.40  Aligned_cols=83  Identities=14%  Similarity=0.172  Sum_probs=55.0

Q ss_pred             ceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEc-CCC--cEEEEeCCCcceeeecccCCCceeEEE
Q 041215            6 GRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAG-SDG--AFNFWDKDSKQRLKAMSRCGQPIPCST   82 (136)
Q Consensus         6 G~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~-~dg--~v~vwd~~~~~~~~~~~~h~~~v~~v~   82 (136)
                      +...||+.|.... ....+.....     .+...+|+|||+.|+-.. ..+  .+.+.+...+. ...+..+........
T Consensus        17 ~~~~l~i~d~dG~-~~~~l~~~~~-----~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~   89 (269)
T d2hqsa1          17 FPYELRVSDYDGY-NQFVVHRSPQ-----PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA-VRQVASFPRHNGAPA   89 (269)
T ss_dssp             CCEEEEEEETTSC-SCEEEEEESS-----CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC-EEEEECCSSCEEEEE
T ss_pred             ceEEEEEEcCCCC-CcEEEecCCC-----ceeeeEECCCCCEEEEEEeeccCcceeeeecccCc-eeEEeeeecccccce
Confidence            3446777886543 4444444566     778899999998776443 333  35555655554 345556677888999


Q ss_pred             EccCCCEEEEEEc
Q 041215           83 FNTDGSIFAYSVC   95 (136)
Q Consensus        83 ~sp~~~~l~s~~~   95 (136)
                      |+|++..++....
T Consensus        90 ~spdg~~i~~~~~  102 (269)
T d2hqsa1          90 FSPDGSKLAFALS  102 (269)
T ss_dssp             ECTTSSEEEEEEC
T ss_pred             ecCCCCeeeEeee
Confidence            9999998886554

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=96.58  E-value=0.014  Score=40.69  Aligned_cols=61  Identities=16%  Similarity=0.158  Sum_probs=48.5

Q ss_pred             ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEEccc
Q 041215           35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVCYD   97 (136)
Q Consensus        35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~dd   97 (136)
                      -+..+++.|+|+++++...++.|..|+.. +. ...+......+.+++|+++|+++++....+
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~~   89 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPD-GN-QQIHATVEGKVSGLAFTSNGDLVATGWNAD   89 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTT-CC-EEEEEECSSEEEEEEECTTSCEEEEEECTT
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCC-CC-EEEEEcCCCCcceEEEcCCCCeEEEecCCc
Confidence            47789999999999999999988888754 33 334445567899999999999888765554

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=96.34  E-value=0.041  Score=38.70  Aligned_cols=61  Identities=10%  Similarity=0.084  Sum_probs=48.2

Q ss_pred             eeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCC-EEEEEEcc
Q 041215           36 VNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGS-IFAYSVCY   96 (136)
Q Consensus        36 v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~-~l~s~~~d   96 (136)
                      ...+++..+|+++++....+.|.+||.+.+..+..+........+++|.|+++ ++++.+..
T Consensus       228 pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~  289 (314)
T d1pjxa_         228 ADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHEN  289 (314)
T ss_dssp             EEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTT
T ss_pred             ceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCC
Confidence            46799999999888887788999999887776666666667789999999986 55654443

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=95.95  E-value=0.012  Score=44.25  Aligned_cols=59  Identities=7%  Similarity=-0.149  Sum_probs=42.7

Q ss_pred             eeEEEEeCCCCEEEEE-cCCCcEEEEeCCCcceeeecc-cCCCceeEEEEccCCC--EEEEEE
Q 041215           36 VNSLNFHPIHHTFATA-GSDGAFNFWDKDSKQRLKAMS-RCGQPIPCSTFNTDGS--IFAYSV   94 (136)
Q Consensus        36 v~~l~~~p~~~~l~s~-~~dg~v~vwd~~~~~~~~~~~-~h~~~v~~v~~sp~~~--~l~s~~   94 (136)
                      .......|||++|+.. ..+..|.++|+.+++....+. .....++.++|+|+++  +++..+
T Consensus        74 ~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~  136 (441)
T d1qnia2          74 ISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNA  136 (441)
T ss_dssp             EEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEE
T ss_pred             cceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEecc
Confidence            4455567999877555 466789999999988766543 3457889999999988  444333

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=95.82  E-value=0.043  Score=36.58  Aligned_cols=77  Identities=13%  Similarity=0.185  Sum_probs=50.3

Q ss_pred             EEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEc-CCC-----cEEEEeCCCcceeeecccC-------CC
Q 041215           10 VHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAG-SDG-----AFNFWDKDSKQRLKAMSRC-------GQ   76 (136)
Q Consensus        10 i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~-~dg-----~v~vwd~~~~~~~~~~~~h-------~~   76 (136)
                      ||.+|..+++. ..|..+.+     .+...+|+|||+.|+-.. .++     .|.+++...+... .+..+       ..
T Consensus        23 l~~~d~~~g~~-~~Lt~~~~-----~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~-~lt~~~~~~~~~~~   95 (281)
T d1k32a2          23 LWEHDLKSGST-RKIVSNLG-----VINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIK-RITYFSGKSTGRRM   95 (281)
T ss_dssp             EEEEETTTCCE-EEEECSSS-----EEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEE-ECCCCCEEEETTEE
T ss_pred             EEEEECCCCCE-EEEecCCC-----cccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceE-EeeecCCCccCccc
Confidence            57778876664 45566666     788899999998666432 222     3666677666543 33222       23


Q ss_pred             ceeEEEEccCCCEEEEE
Q 041215           77 PIPCSTFNTDGSIFAYS   93 (136)
Q Consensus        77 ~v~~v~~sp~~~~l~s~   93 (136)
                      ......|+|+++.++..
T Consensus        96 ~~~~~~~spdg~~l~~~  112 (281)
T d1k32a2          96 FTDVAGFDPDGNLIIST  112 (281)
T ss_dssp             CSEEEEECTTCCEEEEE
T ss_pred             cccccccCCCCCEEEEE
Confidence            44678999999988864

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.63  E-value=0.053  Score=38.06  Aligned_cols=60  Identities=15%  Similarity=0.221  Sum_probs=48.1

Q ss_pred             ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEE
Q 041215           35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSV   94 (136)
Q Consensus        35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~   94 (136)
                      .+..++|.++|+++++-...+.|..|+...+.....+.......+.|+++++|+++++..
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~  100 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYL  100 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEEC
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEec
Confidence            568999999999888887888899898877665555545556789999999999888643

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.59  E-value=0.034  Score=37.11  Aligned_cols=59  Identities=10%  Similarity=0.088  Sum_probs=38.2

Q ss_pred             ceeEEEEeCCCCEEEEEcCC-CcEEEE--eCCCcceeeecccCCCceeEEEEccCCCEEEEEEc
Q 041215           35 SVNSLNFHPIHHTFATAGSD-GAFNFW--DKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSVC   95 (136)
Q Consensus        35 ~v~~l~~~p~~~~l~s~~~d-g~v~vw--d~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~   95 (136)
                      ......|+|++..++..+.+ +...+|  +...+..  +............|+|||+.|+..+.
T Consensus       172 ~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~p~~SPDG~~i~f~s~  233 (269)
T d2hqsa1         172 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTFLDETPSLAPNGTMVIYSSS  233 (269)
T ss_dssp             EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECCCSSSCEEEEECTTSSEEEEEEE
T ss_pred             cccccccccccceeEEEeecCCceeeeEeecccccc--eEeecCccccceEECCCCCEEEEEEc
Confidence            56678999999876666554 444444  4444432  33344456678899999998876544

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.23  E-value=0.031  Score=41.66  Aligned_cols=87  Identities=7%  Similarity=0.061  Sum_probs=55.2

Q ss_pred             eceEEEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEE---------cCCCcEEEEeCCCcceeee--ccc
Q 041215            5 EGRVGVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATA---------GSDGAFNFWDKDSKQRLKA--MSR   73 (136)
Q Consensus         5 dG~v~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~---------~~dg~v~vwd~~~~~~~~~--~~~   73 (136)
                      +|.+  +.+|+.+++....+....-  ..+.+....|+||+++++-.         +..+.+.++|+.++.....  ...
T Consensus        36 ~g~i--~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~  111 (465)
T d1xfda1          36 KGTV--RLWNVETNTSTVLIEGKKI--ESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEV  111 (465)
T ss_dssp             SSCE--EEBCGGGCCCEEEECTTTT--TTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTC
T ss_pred             CCcE--EEEECCCCCEEEEEcCccc--cccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccC
Confidence            5555  4588877766444432221  12256778899999876554         2346788999988764322  222


Q ss_pred             CCCceeEEEEccCCCEEEEEEc
Q 041215           74 CGQPIPCSTFNTDGSIFAYSVC   95 (136)
Q Consensus        74 h~~~v~~v~~sp~~~~l~s~~~   95 (136)
                      ....+....|||+|..+|-...
T Consensus       112 ~~~~l~~~~wSPDG~~iafv~~  133 (465)
T d1xfda1         112 SNAKLQYAGWGPKGQQLIFIFE  133 (465)
T ss_dssp             CSCCCSBCCBCSSTTCEEEEET
T ss_pred             CccccceeeeccCCceEEEEec
Confidence            3456677899999998876554

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.03  E-value=0.13  Score=34.62  Aligned_cols=58  Identities=5%  Similarity=-0.053  Sum_probs=41.7

Q ss_pred             ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEE
Q 041215           35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAY   92 (136)
Q Consensus        35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s   92 (136)
                      ....|++.+++.++++....+.|..++.............-.....|++++++.++++
T Consensus       183 ~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~va  240 (260)
T d1rwia_         183 APWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVA  240 (260)
T ss_dssp             SEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEE
T ss_pred             CCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEE
Confidence            5678999999999988888888888876543322111122345689999999988775

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=94.95  E-value=0.18  Score=35.91  Aligned_cols=60  Identities=10%  Similarity=0.062  Sum_probs=40.1

Q ss_pred             cceeEEEEeCCCCEE-EEEcCCCcEEEEeCCCccee--ee---cc--------------cCCCceeEEEEccCCCEEEEE
Q 041215           34 YSVNSLNFHPIHHTF-ATAGSDGAFNFWDKDSKQRL--KA---MS--------------RCGQPIPCSTFNTDGSIFAYS   93 (136)
Q Consensus        34 ~~v~~l~~~p~~~~l-~s~~~dg~v~vwd~~~~~~~--~~---~~--------------~h~~~v~~v~~sp~~~~l~s~   93 (136)
                      .....+.|+|+++++ ++...++.|.+|+.......  ..   ..              .+......+.++|+|+++.++
T Consensus       193 ~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvs  272 (365)
T d1jofa_         193 DHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFAS  272 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEE
T ss_pred             CceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEE
Confidence            367889999999766 45555788999998654321  11   11              112335678999999987665

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=94.87  E-value=0.36  Score=33.53  Aligned_cols=87  Identities=10%  Similarity=-0.011  Sum_probs=51.0

Q ss_pred             EEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCC----CceeEEEEcc
Q 041215           10 VHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCG----QPIPCSTFNT   85 (136)
Q Consensus        10 i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~----~~v~~v~~sp   85 (136)
                      |+.+|..++........... ...-....+.|.+++..++.++....+..++...+..........    ...+.+++.+
T Consensus        48 I~r~d~~~~~~~~~~~~~~~-~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~  126 (314)
T d1pjxa_          48 ILRIDLKTGKKTVICKPEVN-GYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDY  126 (314)
T ss_dssp             EEEECTTTCCEEEEECCEET-TEECCEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECT
T ss_pred             EEEEECCCCcEEEEECCccc-cCCCcceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECC
Confidence            45577766554433322211 000035689999999877777666668888876543221111111    2357899999


Q ss_pred             CCCEEEEEEccc
Q 041215           86 DGSIFAYSVCYD   97 (136)
Q Consensus        86 ~~~~l~s~~~dd   97 (136)
                      +|.++++-....
T Consensus       127 ~G~lyvtd~~~~  138 (314)
T d1pjxa_         127 EGNLWITAPAGE  138 (314)
T ss_dssp             TSCEEEEECBCB
T ss_pred             CCCEEEecCccC
Confidence            999998754433

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=94.79  E-value=0.12  Score=38.56  Aligned_cols=78  Identities=5%  Similarity=-0.025  Sum_probs=53.1

Q ss_pred             eeCCCCcceeEEEe-eeCCCCccceeEEEEeCCCC--EEEEEcCCC-----------------cEEEEeCCCcceeeecc
Q 041215           13 LDDSQQSKNFTFKC-HRDGSEIYSVNSLNFHPIHH--TFATAGSDG-----------------AFNFWDKDSKQRLKAMS   72 (136)
Q Consensus        13 ~d~~~~~~~~~l~~-h~~~~~~~~v~~l~~~p~~~--~l~s~~~dg-----------------~v~vwd~~~~~~~~~~~   72 (136)
                      +|..+.+...++.. +..     .+..++|+|+++  ++++.+.+.                 .+..+|..+.....++.
T Consensus        99 IDl~t~k~~~ii~iP~g~-----gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~  173 (441)
T d1qnia2          99 IRLDIMKTDKITHIPNVQ-----AIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVI  173 (441)
T ss_dssp             EETTTTEEEEEEECTTCC-----CEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEE
T ss_pred             EECCCCcEeeEEecCCCC-----CccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEe
Confidence            67777766666542 334     788999999995  455444332                 13457887777766665


Q ss_pred             cCCCceeEEEEccCCCEEEEEEcc
Q 041215           73 RCGQPIPCSTFNTDGSIFAYSVCY   96 (136)
Q Consensus        73 ~h~~~v~~v~~sp~~~~l~s~~~d   96 (136)
                      .. +.+..+.|+|+|+++.+++.+
T Consensus       174 v~-~~p~~v~~spdGk~a~vt~~n  196 (441)
T d1qnia2         174 VD-GNLDNTDADYTGKYATSTCYN  196 (441)
T ss_dssp             ES-SCCCCEEECSSSSEEEEEESC
T ss_pred             cC-CCccceEECCCCCEEEEEecC
Confidence            44 467899999999988876544

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.01  E-value=0.27  Score=32.97  Aligned_cols=60  Identities=5%  Similarity=0.020  Sum_probs=44.9

Q ss_pred             ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEE
Q 041215           35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSV   94 (136)
Q Consensus        35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~   94 (136)
                      ...++++.+++.++++....+.|..++...................|++.+++.++++..
T Consensus       141 ~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~  200 (260)
T d1rwia_         141 DPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEH  200 (260)
T ss_dssp             SCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEET
T ss_pred             CcceeeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeec
Confidence            456899999999888888888899999776543332224445668999999998888653

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=93.92  E-value=0.61  Score=35.18  Aligned_cols=79  Identities=13%  Similarity=0.090  Sum_probs=52.6

Q ss_pred             EEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCC-ceeEEEEccCCC-
Q 041215           11 HHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQ-PIPCSTFNTDGS-   88 (136)
Q Consensus        11 ~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~-~v~~v~~sp~~~-   88 (136)
                      .-+|..+++....+.- ..     +...-.+.-.+.+++.++.||.++.+|..+|+.+-++..... .-.=|.|..+|+ 
T Consensus       441 ~A~D~~tGk~~W~~~~-~~-----~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkq  514 (560)
T d1kv9a2         441 LAWDPVKQKAAWKVPY-PT-----HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQ  514 (560)
T ss_dssp             EEEETTTTEEEEEEEE-SS-----SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             EEEeCCCCeEeeeccC-CC-----CCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence            4489999988887652 33     333223344567888999999999999999999977754321 112256777886 


Q ss_pred             EEEEEEc
Q 041215           89 IFAYSVC   95 (136)
Q Consensus        89 ~l~s~~~   95 (136)
                      +|+..++
T Consensus       515 yv~v~aG  521 (560)
T d1kv9a2         515 YVAIMAG  521 (560)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEeC
Confidence            4444444

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=93.87  E-value=0.1  Score=34.61  Aligned_cols=53  Identities=17%  Similarity=0.060  Sum_probs=38.3

Q ss_pred             EEeCC--CCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEccCCCEEEEEE
Q 041215           40 NFHPI--HHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFNTDGSIFAYSV   94 (136)
Q Consensus        40 ~~~p~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~   94 (136)
                      .++|+  |..++=.+ ++.|.+.|+..+.. ..+..+.+.+...+|||||+.||...
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~-~~Lt~~~~~~~~p~~SPDG~~iaf~~   59 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGST-RKIVSNLGVINNARFFPDGRKIAIRV   59 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCE-EEEECSSSEEEEEEECTTSSEEEEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCE-EEEecCCCcccCEEECCCCCEEEEEE
Confidence            35677  76554433 35688888887764 56667777889999999999888654

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.83  E-value=0.15  Score=38.90  Aligned_cols=80  Identities=19%  Similarity=0.205  Sum_probs=54.6

Q ss_pred             EEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCC-ceeEEEEccCCC
Q 041215           10 VHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQ-PIPCSTFNTDGS   88 (136)
Q Consensus        10 i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~-~v~~v~~sp~~~   88 (136)
                      +.-+|..+++.+..+....      ++..-.+...+.+++.++.|+.++.+|.++|+.+-++..... .-.=|.|..+|+
T Consensus       468 l~AiD~~TG~i~W~~~~~~------p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~  541 (582)
T d1flga_         468 LRAMDPVSGKVVWEHKEHL------PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGE  541 (582)
T ss_dssp             EEEECTTTCCEEEEEEESS------CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             EEEEcCCCCcEEeecCCCC------CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCE
Confidence            4458999999998876432      333223344567888999999999999999999977764321 112267888886


Q ss_pred             -EEEEEEc
Q 041215           89 -IFAYSVC   95 (136)
Q Consensus        89 -~l~s~~~   95 (136)
                       +++..++
T Consensus       542 qYv~i~ag  549 (582)
T d1flga_         542 QYLGVTVG  549 (582)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEeC
Confidence             4444433

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=93.71  E-value=0.23  Score=37.78  Aligned_cols=108  Identities=12%  Similarity=0.130  Sum_probs=63.2

Q ss_pred             EEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCce-eEEEEccCCC
Q 041215           10 VHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPI-PCSTFNTDGS   88 (136)
Q Consensus        10 i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v-~~v~~sp~~~   88 (136)
                      +.-+|..+++.+.......      +...-.+.-.+.+++.++.|+.++.+|..+|+.+-++....+.. .=|.|..+|+
T Consensus       459 l~AiD~~tGk~~W~~~~~~------p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~Gk  532 (573)
T d1kb0a2         459 LLAWDPVAQKAAWSVEHVS------PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGR  532 (573)
T ss_dssp             EEEEETTTTEEEEEEEESS------SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             EEEeCCCCCceEeeecCCC------CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCE
Confidence            4458999999988876432      22222234467889999999999999999999997775432111 1255667886


Q ss_pred             -EEEEEEcccccccc-cccCCCCCcceEEEEcCCccc
Q 041215           89 -IFAYSVCYDWSKGA-ENHNPATAKTYIYLHLPQETE  123 (136)
Q Consensus        89 -~l~s~~~dd~~~~~-~~~~~~~~~~~~~~~~~~~~~  123 (136)
                       +++..++..-..+. .........+.+.++-++-++
T Consensus       533 QYv~v~~G~gg~~~~~~~~~~~~~~~~~~~F~l~g~~  569 (573)
T d1kb0a2         533 QYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGGKA  569 (573)
T ss_dssp             EEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETCBC
T ss_pred             EEEEEEeCCCcccccccccccCCCCCEEEEEEeCCcC
Confidence             44444443211111 112222133566666655443

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.30  E-value=0.066  Score=39.78  Aligned_cols=63  Identities=14%  Similarity=0.172  Sum_probs=40.3

Q ss_pred             ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeeccc-CCCc-----------------eeEEEEccCCCEEEEEEcc
Q 041215           35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSR-CGQP-----------------IPCSTFNTDGSIFAYSVCY   96 (136)
Q Consensus        35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~-h~~~-----------------v~~v~~sp~~~~l~s~~~d   96 (136)
                      .+....|+|+|..|+=.. ++.|.+.+...+..++.... ....                 -..+.|||||+.||...-|
T Consensus       115 ~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D  193 (465)
T d1xfda1         115 KLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAIN  193 (465)
T ss_dssp             CCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEE
T ss_pred             ccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEec
Confidence            455688999997766554 45677777766554432221 1111                 1467899999999988765


Q ss_pred             cc
Q 041215           97 DW   98 (136)
Q Consensus        97 d~   98 (136)
                      +-
T Consensus       194 ~s  195 (465)
T d1xfda1         194 DS  195 (465)
T ss_dssp             CT
T ss_pred             cc
Confidence            53

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=93.13  E-value=0.35  Score=34.26  Aligned_cols=61  Identities=10%  Similarity=0.071  Sum_probs=41.0

Q ss_pred             ceeEEEEeCCCCEEEEEcC-CCcEEEEeCCC-ccee--ee--cccCCCceeEEEEccCCCEEEEEEc
Q 041215           35 SVNSLNFHPIHHTFATAGS-DGAFNFWDKDS-KQRL--KA--MSRCGQPIPCSTFNTDGSIFAYSVC   95 (136)
Q Consensus        35 ~v~~l~~~p~~~~l~s~~~-dg~v~vwd~~~-~~~~--~~--~~~h~~~v~~v~~sp~~~~l~s~~~   95 (136)
                      .+.++.|+|+|++++.++. ...|.+|+... +...  ..  ........+.++|+|+++++.....
T Consensus       146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e  212 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALME  212 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEET
T ss_pred             cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEecc
Confidence            4679999999987777764 35688887553 3221  11  1123467789999999997655543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=93.06  E-value=0.82  Score=31.09  Aligned_cols=61  Identities=7%  Similarity=0.025  Sum_probs=42.8

Q ss_pred             ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcc-eeeecccCCCceeEEEE---ccCCCEEEEEEc
Q 041215           35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQ-RLKAMSRCGQPIPCSTF---NTDGSIFAYSVC   95 (136)
Q Consensus        35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~-~~~~~~~h~~~v~~v~~---sp~~~~l~s~~~   95 (136)
                      ....+++.++|.++++...++.|..++..... .+.+........++++|   ++|++.|..+..
T Consensus       209 ~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~  273 (302)
T d2p4oa1         209 NIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN  273 (302)
T ss_dssp             CCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             CCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECC
Confidence            45679999999988888888888888765332 23444445566889999   567775544433

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.16  E-value=1  Score=30.16  Aligned_cols=57  Identities=9%  Similarity=0.053  Sum_probs=41.2

Q ss_pred             ceeEEEEeCCCCEEEEEcC-CCcEEEEeCCCcceeeecccC--CCceeEEEEccCCCEEEE
Q 041215           35 SVNSLNFHPIHHTFATAGS-DGAFNFWDKDSKQRLKAMSRC--GQPIPCSTFNTDGSIFAY   92 (136)
Q Consensus        35 ~v~~l~~~p~~~~l~s~~~-dg~v~vwd~~~~~~~~~~~~h--~~~v~~v~~sp~~~~l~s   92 (136)
                      ....|++.++|+.+++-.. +..|.+|+ .+|..+..+...  ......|++.++|.++++
T Consensus       201 ~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~dG~l~V~  260 (279)
T d1q7fa_         201 YPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMDDGSVVLA  260 (279)
T ss_dssp             SEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEETTTEEEEE
T ss_pred             CCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEEeCCCcEEEE
Confidence            4678999999998877554 45688887 457666555332  345789999999987664

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=92.04  E-value=1.2  Score=30.63  Aligned_cols=59  Identities=12%  Similarity=0.149  Sum_probs=37.1

Q ss_pred             ceeEEEEeCCCCEEEEEcCC----CcEEEEeCCCcceeeeccc--CCCceeEEEEccCCCEEEEE
Q 041215           35 SVNSLNFHPIHHTFATAGSD----GAFNFWDKDSKQRLKAMSR--CGQPIPCSTFNTDGSIFAYS   93 (136)
Q Consensus        35 ~v~~l~~~p~~~~l~s~~~d----g~v~vwd~~~~~~~~~~~~--h~~~v~~v~~sp~~~~l~s~   93 (136)
                      ....++++++|.++++...+    +.+...+...+........  -...++.+.+.++|+++++-
T Consensus        83 ~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd  147 (319)
T d2dg1a1          83 NPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTD  147 (319)
T ss_dssp             SEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEE
T ss_pred             CeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecc
Confidence            57899999999988776432    2344444444333222211  13456789999999988763

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=91.29  E-value=0.42  Score=36.56  Aligned_cols=81  Identities=12%  Similarity=-0.005  Sum_probs=52.6

Q ss_pred             EEEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCC-ceeEEEEccCC
Q 041215            9 GVHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQ-PIPCSTFNTDG   87 (136)
Q Consensus         9 ~i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~-~v~~v~~sp~~   87 (136)
                      .+.-+|..+++...... +..     ++..-.+.-.+.+++.++.|+.++.+|..+|+.+-++..... .-.=|.|..+|
T Consensus       454 ~l~A~D~~TG~~~W~~~-~~~-----~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dG  527 (596)
T d1w6sa_         454 QIKAYNAITGDYKWEKM-ERF-----AVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKG  527 (596)
T ss_dssp             EEEEECTTTCCEEEEEE-ESS-----CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETT
T ss_pred             eEEEEeCCCCceecccC-CCC-----CCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECC
Confidence            34458999998887754 222     333223334567888999999999999999999977754321 11225576788


Q ss_pred             C-EEEEEEc
Q 041215           88 S-IFAYSVC   95 (136)
Q Consensus        88 ~-~l~s~~~   95 (136)
                      + +++...+
T Consensus       528 kQYvav~~G  536 (596)
T d1w6sa_         528 TQYVAIYYG  536 (596)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEEec
Confidence            6 4444433

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=91.05  E-value=1.2  Score=30.44  Aligned_cols=64  Identities=16%  Similarity=0.265  Sum_probs=48.0

Q ss_pred             ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCCCceeEEEEc-cCCC-EEEEEEccccc
Q 041215           35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCGQPIPCSTFN-TDGS-IFAYSVCYDWS   99 (136)
Q Consensus        35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~s-p~~~-~l~s~~~dd~~   99 (136)
                      ....+++..+|++.++.-..+.|..||- +++.+..+......+++++|- ++.+ +++|....+..
T Consensus       200 ~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta~~~~~  265 (295)
T d2ghsa1         200 GMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSAREHLD  265 (295)
T ss_dssp             EEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCTTCC
T ss_pred             cccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEeCCCCCEEEEEECCcCCC
Confidence            5678999999998888777788999994 577777776666678999995 5644 66765554443

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=90.72  E-value=0.51  Score=35.78  Aligned_cols=80  Identities=11%  Similarity=-0.030  Sum_probs=51.7

Q ss_pred             EEEeeCCCCcceeEEEeeeCCCCccceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecccCC-CceeEEEEccCCC
Q 041215           10 VHHLDDSQQSKNFTFKCHRDGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCG-QPIPCSTFNTDGS   88 (136)
Q Consensus        10 i~~~d~~~~~~~~~l~~h~~~~~~~~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~h~-~~v~~v~~sp~~~   88 (136)
                      +.-+|..+++.+..... ..     +..+-.+.-.+.+++.++.|+.++.+|.++|+.+-++.... ..-.-|.|..+|+
T Consensus       446 l~AiD~~TG~~~W~~~~-~~-----~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGk  519 (571)
T d2ad6a1         446 IRAFDLTTGKAKWTKWE-KF-----AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGK  519 (571)
T ss_dssp             EEEECTTTCCEEEEEEE-SS-----CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             EEEeccCCCceeeEcCC-CC-----CCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCE
Confidence            34489999998887653 22     22211222246788889999999999999999987765432 1222366777886


Q ss_pred             -EEEEEEc
Q 041215           89 -IFAYSVC   95 (136)
Q Consensus        89 -~l~s~~~   95 (136)
                       +++...+
T Consensus       520 qYi~v~~g  527 (571)
T d2ad6a1         520 QYIGSMYG  527 (571)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEec
Confidence             4444443

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=86.03  E-value=2.1  Score=28.52  Aligned_cols=58  Identities=12%  Similarity=0.149  Sum_probs=44.4

Q ss_pred             ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeecc--cCCCceeEEEEccCCCEEEEE
Q 041215           35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMS--RCGQPIPCSTFNTDGSIFAYS   93 (136)
Q Consensus        35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~~--~h~~~v~~v~~sp~~~~l~s~   93 (136)
                      ....+++.+++..+++....+.|.+|+.. +..+.++.  +.......|++.++|.++++-
T Consensus       158 ~~~~i~~d~~g~i~v~d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad  217 (279)
T d1q7fa_         158 FPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIAD  217 (279)
T ss_dssp             SEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEE
T ss_pred             ccceeeeccceeEEeeeccccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEE
Confidence            56788899999888888888899999864 45555552  234567889999999987753

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=82.76  E-value=5.1  Score=26.98  Aligned_cols=58  Identities=9%  Similarity=0.060  Sum_probs=41.0

Q ss_pred             ceeEEEEeCCCCEEEEEcCCCcEEEEeCCCcceeeec--cc--CCCceeEEEEccCCCEEEEEE
Q 041215           35 SVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAM--SR--CGQPIPCSTFNTDGSIFAYSV   94 (136)
Q Consensus        35 ~v~~l~~~p~~~~l~s~~~dg~v~vwd~~~~~~~~~~--~~--h~~~v~~v~~sp~~~~l~s~~   94 (136)
                      .+.++++.+++.++++. .+ .+.++|..++....-.  ..  ....++.+.+.|+|++.++..
T Consensus        60 ~~~~i~~~~dg~l~va~-~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~  121 (295)
T d2ghsa1          60 MGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTM  121 (295)
T ss_dssp             CEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEE
T ss_pred             CcEEEEEecCCCEEEEE-eC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEec
Confidence            67899999998888765 34 4888899887643221  11  124578899999999877643

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=82.39  E-value=5.6  Score=28.26  Aligned_cols=59  Identities=20%  Similarity=0.407  Sum_probs=39.2

Q ss_pred             ceeEEEEeCCCCEEE-EEcCCC----cEEEEeCCCcceee-ecccCCCceeEEEEccCCCEEEEEEc
Q 041215           35 SVNSLNFHPIHHTFA-TAGSDG----AFNFWDKDSKQRLK-AMSRCGQPIPCSTFNTDGSIFAYSVC   95 (136)
Q Consensus        35 ~v~~l~~~p~~~~l~-s~~~dg----~v~vwd~~~~~~~~-~~~~h~~~v~~v~~sp~~~~l~s~~~   95 (136)
                      .+...+++|++++++ +-+.+|    .|+++|+.+++.+- .+..  .....++|++++..|....-
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~--~~~~~~~W~~D~~~~~Y~~~  190 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--VKFSCMAWTHDGKGMFYNAY  190 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--ECSCCEEECTTSSEEEEEEC
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc--ccccceEEcCCCCEEEEEEe
Confidence            455678899997655 333333    59999999987653 2221  22357899999998776543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=81.24  E-value=6.1  Score=26.84  Aligned_cols=62  Identities=15%  Similarity=0.253  Sum_probs=41.6

Q ss_pred             eeEEEEeCCCCEEEEEcCC-CcEEEEeCCCcceeeeccc-CCCceeEEEEccCCCEEEEEEccc
Q 041215           36 VNSLNFHPIHHTFATAGSD-GAFNFWDKDSKQRLKAMSR-CGQPIPCSTFNTDGSIFAYSVCYD   97 (136)
Q Consensus        36 v~~l~~~p~~~~l~s~~~d-g~v~vwd~~~~~~~~~~~~-h~~~v~~v~~sp~~~~l~s~~~dd   97 (136)
                      .....+.+++..++.|+.+ ..+.+||..+..-...-.. ....-.+++..+++++++.++.++
T Consensus        78 ~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~  141 (387)
T d1k3ia3          78 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWS  141 (387)
T ss_dssp             SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCC
T ss_pred             eeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCceeeeccccc
Confidence            4567788999999988776 4799999876543221111 112335777888999988876543