Citrus Sinensis ID: 041218

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170----
Protein Sequence
MAMLGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGFKSFSLIFLTALIVITINQNMFYEGLYLASSTMGTAMGNLIPAITFVLAAIVGSCCWSLWPILQVLKKSSNSLLKTNCVSVSLTVCMGFFATIQSAIVTLFLEPDPESWALHTNP
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHcHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHEEHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEccccccHccccccc
Coil and Loop (DISEMBL)
MAMLGLQCSYAGVAVFTGAALlqgmsprgsVVYRQAMATLIIAPIAyfsrrksripplgfksFSLIFLTALIVITINQNMFYEGLYLASSTMGTAMGNLIPAITFVLAAIVGSCCWSLWPILQVLKKSsnsllktncVSVSLTVCMGFFATIQSAIVTLFlepdpeswalhtnp
Flexible Loop (DISEMBL)
MAMLGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGFKSFSLIFLTALIVITINQNMFYEGLYLASSTMGTAMGNLIPAITFVLAAIVGSCCWSLWPILQVLKKSSNSLLKTNCVSVSLTVCMGFFATIQSAIVTLFLEPdpeswalhtnp
Low Complexity Region (SEG)
MAMLGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGFKSFSLIFLTALIVITINQNMFYEGLYLASSTMGTAMGNLIPAITFVLAAIVGSCCWSLWPILQVLKKSSNSLLKTNCVSVSLTVCMGFFATIQSAIVTLFLEPDPESWALHTNP
Disordered region (IsUnstruct)
***LGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGFKSFSLIFLTALIVITINQNMFYEGLYLASSTMGTAMGNLIPAITFVLAAIVGSCCWSLWPILQVLKKSSNSLLKTNCVSVSLTVCMGFFATIQSAIVTLFLEP***********
Disordered Region (DISOPRED)
MAMLGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGFKSFSLIFLTALIVITINQNMFYEGLYLASSTMGTAMGNLIPAITFVLAAIVGSCCWSLWPILQVLKKSSNSLLKTNCVSVSLTVCMGFFATIQSAIVTLFLEPDPESW**H***
Disordered Region (DISEMBL)
MAMLGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGFKSFSLIFLTALIVITINQNMFYEGLYLASSTMGTAMGNLIPAITFVLAAIVGSCCWSLWPILQVLKKSSNSLLKTNCVSVSLTVCMGFFATIQSAIVTLFLEPDPE********
Disordered Region (DISPRO)
MAMLGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGFKSFSLIFLTALIVITINQNMFYEGLYLASSTMGTAMGNLIPAITFVLAAIVGSCCWSLWPILQVLKKSSNSLLKTNCVSVSLTVCMGFFATIQSAIVTLFLEPDPE********
Transmembrane Helix (TMHMM)
oooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooo
Transmembrane Helix (MEMSAT)
iiiHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSoooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAMLGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGFKSFSLIFLTALIVITINQNMFYEGLYLASSTMGTAMGNLIPAITFVLAAIVGSCCWSLWPILQVLKKSSNSLLKTNCVSVSLTVCMGFFATIQSAIVTLFLEPDPESWALHTNP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	174	2.2.26 [Sep-21-2011]
Q9M0B8	373	WAT1-related protein At4g	yes	no	0.988	0.461	0.367	2e-30
Q9SUD5	359	WAT1-related protein At4g	no	no	0.643	0.311	0.504	3e-24
Q9FL41	402	WAT1-related protein At5g	no	no	0.620	0.268	0.440	3e-17
F4HZQ7	389	WAT1-related protein At1g	no	no	0.626	0.280	0.427	3e-16
O80638	374	WAT1-related protein At2g	no	no	0.626	0.291	0.418	1e-15
Q9LXX8	377	WAT1-related protein At3g	no	no	0.620	0.286	0.449	2e-15
Q9ZUS1	380	WAT1-related protein At2g	no	no	0.637	0.292	0.419	2e-15
F4IJ08	394	WAT1-related protein At2g	no	no	0.620	0.274	0.458	3e-15
Q9LV20	383	WAT1-related protein At3g	no	no	0.614	0.279	0.425	2e-14
Q8GXB4	374	WAT1-related protein At1g	no	no	0.626	0.291	0.381	6e-13

>sp|Q9M0B8|WTR37_ARATH WAT1-related protein At4g30420 OS=Arabidopsis thaliana GN=At4g30420 PE=3 SV=1

 Score =  131 bits (329), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 87/237 (36%), Positives = 118/237 (49%), Gaps = 65/237 (27%)

Query: 1   MAMLGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRI--PPL 58
           MAM  +Q  YAGV +F  A L+ G+SPR  ++YRQA AT+ I P  Y SRRKS+I    L
Sbjct: 1   MAMTMIQLCYAGVTLFARATLVHGLSPRVFILYRQAFATIFIFPFLYLSRRKSKIAISSL 60

Query: 59  GFKSFSLIFLTALIVITINQNMFYEGLYLASSTMGTAMGNLIPAITFVLAAIVGSCCWSL 118
             KSFSLIFL +LI ITINQN++ EGLYL SS+MG+A+GN+IPAITF+++ + G    +L
Sbjct: 61  DLKSFSLIFLVSLIGITINQNLYLEGLYLTSSSMGSAVGNIIPAITFLISFLAGYEKLNL 120

Query: 119 WPILQVLKKSSNSLLKTNCVSVSL------------------------------------ 142
             I  + K +   L     +S++L                                    
Sbjct: 121 RDIRGLAKIAGTILCVAGAISMTLLRGPKILNSESALPIAKSVLGHLKDQNTWLIGCLFL 180

Query: 143 ---TVCMGFFATIQ------------------------SAIVTLFLEPDPESWALHT 172
              T+C  F+  +Q                         A+VT FLE DP +W LH+
Sbjct: 181 FSSTLCWSFWLILQVPISAYYPDNLSLSAWMCLFGTIQCAVVTFFLEKDPNAWILHS 237

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUD5|WTR36_ARATH WAT1-related protein At4g28040 OS=Arabidopsis thaliana GN=At4g28040 PE=2 SV=1

 Score =  111 bits (277), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 57/113 (50%), Positives = 84/113 (74%), Gaps = 1/113 (0%)

Query: 1   MAMLGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSR-RKSRIPPLG 59
           +A++ LQ + AGVA+FT AA ++G++P   VVYRQA+ATL I PI++ S  RK   P LG
Sbjct: 10  LALVMLQFTSAGVALFTKAAFMEGLNPTVFVVYRQAIATLFICPISFISAWRKENKPSLG 69

Query: 60  FKSFSLIFLTALIVITINQNMFYEGLYLASSTMGTAMGNLIPAITFVLAAIVG 112
            + F  + LTA+I +T+NQN +++G+ L+SS+M  AM NLIPA+TF+++ IVG
Sbjct: 70  VRGFWWVALTAVIGVTVNQNAYFKGIDLSSSSMACAMTNLIPAVTFIISIIVG 122

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL41|WTR38_ARATH WAT1-related protein At5g07050 OS=Arabidopsis thaliana GN=At5g07050 PE=2 SV=1

 Score = 87.8 bits (216), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 48/109 (44%), Positives = 68/109 (62%), Gaps = 1/109 (0%)

Query: 2   AMLGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGFK 61
           AM+ LQ  YAG+ + T  +L  GMS    VVYR A+AT +IAP A+F  RK++ P + F 
Sbjct: 21  AMISLQFGYAGMNIITKISLNTGMSHYVLVVYRHAIATAVIAPFAFFFERKAQ-PKITFS 79

Query: 62  SFSLIFLTALIVITINQNMFYEGLYLASSTMGTAMGNLIPAITFVLAAI 110
            F  +F+  L+   I+QN +Y GL   S T   AM N++PA+TF+LA +
Sbjct: 80  IFMQLFILGLLGPVIDQNFYYMGLKYTSPTFSCAMSNMLPAMTFILAVL 128

Arabidopsis thaliana (taxid: 3702)

>sp|F4HZQ7|WTR5_ARATH WAT1-related protein At1g21890 OS=Arabidopsis thaliana GN=At1g21890 PE=2 SV=1

 Score = 84.7 bits (208), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/110 (42%), Positives = 67/110 (60%), Gaps = 1/110 (0%)

Query: 1   MAMLGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGF 60
           +AM+ +Q  YAG+ + T  +L  GM+     VYR A+AT +IAP A F  RK R P + F
Sbjct: 13  LAMISMQFGYAGMYIITMVSLKHGMNHYVLAVYRHAIATAVIAPFALFHERKIR-PKMTF 71

Query: 61  KSFSLIFLTALIVITINQNMFYEGLYLASSTMGTAMGNLIPAITFVLAAI 110
           + F  I L   I   ++QN++Y G+   S+T  +A  N++PAITFVLA I
Sbjct: 72  RIFLQIALLGFIEPVLDQNLYYVGMTYTSATFASATANVLPAITFVLAII 121

Arabidopsis thaliana (taxid: 3702)

>sp|O80638|WTR14_ARATH WAT1-related protein At2g39510 OS=Arabidopsis thaliana GN=At2g39510 PE=2 SV=1

 Score = 82.8 bits (203), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/110 (41%), Positives = 65/110 (59%), Gaps = 1/110 (0%)

Query: 1   MAMLGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGF 60
           + ++ LQ  YAG+++    AL QGMSP     YR  +AT+ IAP AYF  RK R P +  
Sbjct: 10  ITVVSLQFGYAGLSIIAKFALNQGMSPHVLASYRHIVATIFIAPFAYFLDRKIR-PKMTL 68

Query: 61  KSFSLIFLTALIVITINQNMFYEGLYLASSTMGTAMGNLIPAITFVLAAI 110
             F  I L  L+  TI+QN++Y G+   S+T   AM N++PA  F++A I
Sbjct: 69  SIFFKILLLGLLEPTIDQNLYYTGMKYTSATFTAAMTNVLPAFAFIMAWI 118

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXX8|WTR27_ARATH WAT1-related protein At3g56620 OS=Arabidopsis thaliana GN=At3g56620 PE=2 SV=1

 Score = 82.0 bits (201), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/109 (44%), Positives = 66/109 (60%), Gaps = 1/109 (0%)

Query: 2   AMLGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGFK 61
           AM+ LQ  YAG+ + T   L +GMS    V YR A AT  IAP A  S RK R P + F 
Sbjct: 14  AMVCLQFGYAGMNLVTKVVLDRGMSHYVLVAYRNAFATAAIAPFALLSERKVR-PKMTFP 72

Query: 62  SFSLIFLTALIVITINQNMFYEGLYLASSTMGTAMGNLIPAITFVLAAI 110
            F  IF+ AL+   I+QN++Y GL L S T   A+ N++PA+TF+++ I
Sbjct: 73  IFMQIFVLALLGPLIDQNLYYAGLKLTSPTFAGAVTNIVPALTFIISII 121

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUS1|WTR13_ARATH WAT1-related protein At2g37460 OS=Arabidopsis thaliana GN=At2g37460 PE=2 SV=1

 Score = 82.0 bits (201), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/112 (41%), Positives = 71/112 (63%), Gaps = 1/112 (0%)

Query: 1   MAMLGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGF 60
           ++M+ LQ   AG+ + + A L +GMS    VVYR A+AT+++AP A++  +K R P +  
Sbjct: 17  ISMVVLQVGLAGMDILSKAVLNKGMSNYVLVVYRHAVATIVMAPFAFYFDKKVR-PKMTL 75

Query: 61  KSFSLIFLTALIVITINQNMFYEGLYLASSTMGTAMGNLIPAITFVLAAIVG 112
             F  I L  L+   I+QN++Y G+   ++T  TAM N++PAITFVLA I G
Sbjct: 76  MIFFKISLLGLLEPVIDQNLYYLGMKYTTATFATAMYNVLPAITFVLAYIFG 127

Arabidopsis thaliana (taxid: 3702)

>sp|F4IJ08|WTR15_ARATH WAT1-related protein At2g40900 OS=Arabidopsis thaliana GN=At2g40900 PE=2 SV=1

 Score = 81.6 bits (200), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/109 (45%), Positives = 65/109 (59%), Gaps = 1/109 (0%)

Query: 2   AMLGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGFK 61
           AM+ LQ  YAG+ + T   L +GMS    V YR A AT  IAP A  S RK R   + F 
Sbjct: 14  AMVCLQFGYAGMNLVTKTVLDRGMSHYVLVAYRNAFATAAIAPFALLSERKVR-SKMTFP 72

Query: 62  SFSLIFLTALIVITINQNMFYEGLYLASSTMGTAMGNLIPAITFVLAAI 110
            F  IFL AL+   I+QN++Y GL L S T  +A+ N++PAIT +LA +
Sbjct: 73  IFMRIFLLALLGPVIDQNLYYIGLKLTSPTFSSAVSNIVPAITIILATL 121

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LV20|WTR17_ARATH WAT1-related protein At3g18200 OS=Arabidopsis thaliana GN=At3g18200 PE=2 SV=1

 Score = 78.6 bits (192), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/108 (42%), Positives = 63/108 (58%), Gaps = 1/108 (0%)

Query: 1   MAMLGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGF 60
           +A++ LQ  +AG  + +  AL  G+S     VYR  +A L+I P AYF  +K R PPL  
Sbjct: 37  VALITLQFCFAGFHIVSRVALNIGVSKVVYPVYRNLLALLLIGPFAYFFEKKER-PPLTI 95

Query: 61  KSFSLIFLTALIVITINQNMFYEGLYLASSTMGTAMGNLIPAITFVLA 108
              +  F  ALI IT NQ  +  GLY A+ T  +AM N +PAITF++A
Sbjct: 96  SLLAQFFFLALIGITANQGFYLLGLYYATPTFASAMQNSVPAITFIMA 143

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GXB4|WTR2_ARATH WAT1-related protein At1g09380 OS=Arabidopsis thaliana GN=At1g09380 PE=2 SV=1

 Score = 73.6 bits (179), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 67/110 (60%), Gaps = 1/110 (0%)

Query: 1   MAMLGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGF 60
           +AM+ +Q  YAG+ + +  A+  GM P   V YRQ  AT+   P+A+F  RK+R P +  
Sbjct: 10  LAMVLVQIGYAGMNITSKMAMEAGMKPLILVAYRQIFATIATFPVAFFLERKTR-PKITL 68

Query: 61  KSFSLIFLTALIVITINQNMFYEGLYLASSTMGTAMGNLIPAITFVLAAI 110
           +    +F  ++   T NQ +++ GL  +S T+  A+ NL+PA+TF+LAAI
Sbjct: 69  RILVQVFFCSITGATGNQVLYFVGLQNSSPTIACALTNLLPAVTFLLAAI 118

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	174
224142317	371	predicted protein [Populus trichocarpa]	0.948	0.444	0.437	3e-36
224091873	322	predicted protein [Populus trichocarpa]	0.988	0.534	0.426	1e-34
449453922	369	PREDICTED: auxin-induced protein 5NG4-li	0.603	0.284	0.651	9e-33
449506258	365	PREDICTED: LOW QUALITY PROTEIN: auxin-in	0.620	0.295	0.642	1e-30
15234742	373	nodulin MtN21 /EamA-like transporter fam	0.988	0.461	0.367	1e-28
297802988	371	predicted protein [Arabidopsis lyrata su	0.643	0.301	0.578	7e-28
388492196	368	unknown [Lotus japonicus]	0.942	0.445	0.379	2e-26
359806031	367	uncharacterized protein LOC100817369 [Gl	0.637	0.302	0.578	5e-26
356562516	364	PREDICTED: LOW QUALITY PROTEIN: auxin-in	0.747	0.357	0.496	1e-25
255574599	380	Auxin-induced protein 5NG4, putative [Ri	0.643	0.294	0.637	2e-25

>gi|224142317|ref|XP_002324505.1| predicted protein [Populus trichocarpa] gi|222865939|gb|EEF03070.1| predicted protein [Populus trichocarpa]

 Score =  156 bits (395), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 101/231 (43%), Positives = 132/231 (57%), Gaps = 66/231 (28%)

Query: 1   MAMLGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGF 60
           +AMLG+Q SYA V++   AAL+QGMSPR  VVYRQA+AT++IAP+A+FSR KS    +G 
Sbjct: 11  LAMLGMQFSYAIVSLIIRAALIQGMSPRVFVVYRQAIATVVIAPLAHFSR-KSGGTSMGL 69

Query: 61  KSFSLIFLTALIVITINQNMFYEGLYLASSTMGTAMGNLIPAITFVL------------- 107
           +SFSL+F  +LI +TINQN+F EGLYLASS+M +AMGNL+PAITFV+             
Sbjct: 70  RSFSLVFSASLIGVTINQNVFAEGLYLASSSMASAMGNLVPAITFVMAFLIGLEKINIRS 129

Query: 108 ----AAIVGSC------------------------------------------CWSLWPI 121
               A IVG+                                           CWS+W I
Sbjct: 130 FRSIAKIVGTVICVSGAISMALLRGPKLLNTTIFESGGEDWLLGCLLIFASTFCWSIWLI 189

Query: 122 LQVLKKSSNSLLKTNCVSVSLTVCMGFFATIQSAIVTLFLEPDPESWALHT 172
           LQV   +S      + +S+S  +C  F AT+QS I+TLFLE D E+W LH+
Sbjct: 190 LQVPVTASYP----DHLSLSAWLC--FLATLQSGILTLFLEKDLEAWKLHS 234

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224091873|ref|XP_002309381.1| predicted protein [Populus trichocarpa] gi|222855357|gb|EEE92904.1| predicted protein [Populus trichocarpa]

 Score =  150 bits (380), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 96/225 (42%), Positives = 124/225 (55%), Gaps = 53/225 (23%)

Query: 1   MAMLGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGF 60
           +AM GLQ SYA V++ T AAL+ GMSPR  VVYRQA+ATL+I P++YFSRRKS    LG 
Sbjct: 4   LAMFGLQFSYAIVSLITRAALIHGMSPRVFVVYRQAIATLVIVPVSYFSRRKSAGTSLGL 63

Query: 61  KSFSLIFLTALIVITINQNMFYEGLYLASSTMGTAMGNLIPAITFVLAA----------- 109
           +SF L+F  + I +TINQN+F EGLYLASS+M +AMGNL+PAITFV+A            
Sbjct: 64  RSFCLVFSASFIGVTINQNVFAEGLYLASSSMASAMGNLVPAITFVMAVALGLEKIKIGS 123

Query: 110 ------IVGSCCWSLWPILQVLKKSSNSLLKT-----------NCVSVSLTVC------- 145
                 IVG+       I   L +    L KT            C+ + ++ C       
Sbjct: 124 FRSIAKIVGTVICVSGAISMALLRGPKLLNKTIFGSGGEDWLLGCLFIFVSTCCWSIWLI 183

Query: 146 ------------------MGFFATIQSAIVTLFLEPDPESWALHT 172
                             M F AT+QS I+TLFLE D ++W LH+
Sbjct: 184 LQVPLTASYPDHLSLSAWMCFLATLQSGILTLFLEKDLDAWKLHS 228

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453922|ref|XP_004144705.1| PREDICTED: auxin-induced protein 5NG4-like [Cucumis sativus]

 Score =  144 bits (364), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 73/112 (65%), Positives = 92/112 (82%)

Query: 1   MAMLGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGF 60
           MAM GLQ +YA +A+ + AALL+GMSPR  VVYRQA+ATL IAPIAYFSR KSR   L  
Sbjct: 11  MAMFGLQVTYAIMALLSRAALLKGMSPRVFVVYRQAVATLFIAPIAYFSRSKSRRVSLNL 70

Query: 61  KSFSLIFLTALIVITINQNMFYEGLYLASSTMGTAMGNLIPAITFVLAAIVG 112
           +SFSLIFL +L+ +T+NQN+++EG++L SS+M TAM NLIPA+TFV+A IVG
Sbjct: 71  RSFSLIFLASLVGVTMNQNVYFEGVFLVSSSMATAMTNLIPAVTFVIATIVG 122

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449506258|ref|XP_004162696.1| PREDICTED: LOW QUALITY PROTEIN: auxin-induced protein 5NG4-like [Cucumis sativus]

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 72/112 (64%), Positives = 90/112 (80%), Gaps = 4/112 (3%)

Query: 1   MAMLGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGF 60
           MAM GLQ +YA +A+ + AALL+GMSPR  VVYRQA+ATL IAPIAYFSRR S    L  
Sbjct: 11  MAMFGLQVTYAIMALLSRAALLKGMSPRIFVVYRQAVATLFIAPIAYFSRRVS----LNL 66

Query: 61  KSFSLIFLTALIVITINQNMFYEGLYLASSTMGTAMGNLIPAITFVLAAIVG 112
           +SFSLIFL +L+ +T+NQN+++EG +L SS+M TAM NLIPA+TFV+A IVG
Sbjct: 67  RSFSLIFLASLVGVTMNQNVYFEGXFLVSSSMATAMTNLIPAVTFVIATIVG 118

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15234742|ref|NP_194771.1| nodulin MtN21 /EamA-like transporter family protein [Arabidopsis thaliana] gi|7269943|emb|CAB79760.1| nodulin-like protein [Arabidopsis thaliana] gi|332660363|gb|AEE85763.1| nodulin MtN21 /EamA-like transporter family protein [Arabidopsis thaliana]

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 87/237 (36%), Positives = 118/237 (49%), Gaps = 65/237 (27%)

Query: 1   MAMLGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRI--PPL 58
           MAM  +Q  YAGV +F  A L+ G+SPR  ++YRQA AT+ I P  Y SRRKS+I    L
Sbjct: 1   MAMTMIQLCYAGVTLFARATLVHGLSPRVFILYRQAFATIFIFPFLYLSRRKSKIAISSL 60

Query: 59  GFKSFSLIFLTALIVITINQNMFYEGLYLASSTMGTAMGNLIPAITFVLAAIVGSCCWSL 118
             KSFSLIFL +LI ITINQN++ EGLYL SS+MG+A+GN+IPAITF+++ + G    +L
Sbjct: 61  DLKSFSLIFLVSLIGITINQNLYLEGLYLTSSSMGSAVGNIIPAITFLISFLAGYEKLNL 120

Query: 119 WPILQVLKKSSNSLLKTNCVSVSL------------------------------------ 142
             I  + K +   L     +S++L                                    
Sbjct: 121 RDIRGLAKIAGTILCVAGAISMTLLRGPKILNSESALPIAKSVLGHLKDQNTWLIGCLFL 180

Query: 143 ---TVCMGFFATIQ------------------------SAIVTLFLEPDPESWALHT 172
              T+C  F+  +Q                         A+VT FLE DP +W LH+
Sbjct: 181 FSSTLCWSFWLILQVPISAYYPDNLSLSAWMCLFGTIQCAVVTFFLEKDPNAWILHS 237

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297802988|ref|XP_002869378.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297315214|gb|EFH45637.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  128 bits (322), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 66/114 (57%), Positives = 85/114 (74%), Gaps = 2/114 (1%)

Query: 1   MAMLGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRI--PPL 58
           MAM  +Q  YAGV +F  A L+ G+SPR  ++YRQA AT+ I P  Y SRRKS+I    L
Sbjct: 1   MAMTMIQLCYAGVTLFARATLVHGLSPRVFILYRQAFATIFIFPFLYLSRRKSKIAISSL 60

Query: 59  GFKSFSLIFLTALIVITINQNMFYEGLYLASSTMGTAMGNLIPAITFVLAAIVG 112
             KSFSLIFL +LI ITINQN++ EGLYL SS+MG+A+GN+IPAITF+++ + G
Sbjct: 61  DLKSFSLIFLVSLIGITINQNLYLEGLYLTSSSMGSAVGNIIPAITFLISFLAG 114

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388492196|gb|AFK34164.1| unknown [Lotus japonicus]

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/240 (37%), Positives = 119/240 (49%), Gaps = 76/240 (31%)

Query: 1   MAMLGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFS-RRKSRIPPLG 59
           +AM+GLQ  YA +A+ T AALL G+SP   VVYRQ +ATL + PI + S RR+S    L 
Sbjct: 12  IAMIGLQFYYAILAILTRAALLDGLSPPIFVVYRQGIATLALTPIFFSSKRRQSLKSSLR 71

Query: 60  FKSFSLIFLTALIVITINQNMFYEGLYLASSTMGTAMGNLIPAITFV------------- 106
           F+S+SL+F T+LI +T NQN +++GLY ASST  TAM NLIPA+TFV             
Sbjct: 72  FRSYSLMFATSLIGVTANQNTYFQGLYYASSTAATAMSNLIPALTFVIAAIFGFEKVDLR 131

Query: 107 ----LAAIVGSCC----------------------------------------------- 115
               +A I+G+ C                                               
Sbjct: 132 SLRFMAKILGTVCCVVGALTMALLKGHKLLNTEFIPFIHLTASRGDDWLLGCSLLLASSV 191

Query: 116 -WSLWPILQVLKKSS--NSLLKTNCVSVSLTVCMGFFATIQSAIVTLFLEPDPESWALHT 172
            WS W I+QV   SS  + LL T         CM FFATIQSA+  LF   + ++W LH+
Sbjct: 192 FWSSWIIMQVPISSSCPDHLLST--------FCMCFFATIQSALFALFYGENFQAWMLHS 243

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806031|ref|NP_001241431.1| uncharacterized protein LOC100817369 [Glycine max] gi|255647987|gb|ACU24450.1| unknown [Glycine max]

 Score =  122 bits (306), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 66/114 (57%), Positives = 86/114 (75%), Gaps = 3/114 (2%)

Query: 1   MAMLGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFS--RRKSRIPPL 58
           + M+GLQ  YA +A+FT AALL G+S    VVYRQ +ATL +API +FS  RR+S    L
Sbjct: 11  IVMIGLQIHYAALAIFTRAALLDGLSTTVFVVYRQGIATLALAPI-FFSPKRRQSVKDSL 69

Query: 59  GFKSFSLIFLTALIVITINQNMFYEGLYLASSTMGTAMGNLIPAITFVLAAIVG 112
           GF+SF L+F+TAL+ +T NQN +++GL+ ASST  TAM NLIPA+TFV+AAI G
Sbjct: 70  GFRSFFLMFVTALVGVTANQNAYFKGLFYASSTAATAMSNLIPALTFVIAAIAG 123

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562516|ref|XP_003549516.1| PREDICTED: LOW QUALITY PROTEIN: auxin-induced protein 5NG4-like [Glycine max]

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/139 (49%), Positives = 96/139 (69%), Gaps = 9/139 (6%)

Query: 1   MAMLGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFS--RRKSRIPPL 58
           + M+GLQ  YA +A+FT AALL G+S    VVYRQ +ATL +AP+ +FS  RR+S    L
Sbjct: 11  IVMVGLQIHYAALAIFTRAALLDGLSTTVFVVYRQGIATLALAPM-FFSPKRRQSVKDSL 69

Query: 59  GFKSFSLIFLTALIVITINQNMFYEGLYLASSTMGTAMGNLIPAITFVLAAIVGSCCWSL 118
           GF+SF L+F+TAL+ +T NQN +++GL+ ASST  TAM NLIPA+TFV+AAI G      
Sbjct: 70  GFRSFFLMFVTALVGVTANQNAYFKGLFYASSTAATAMSNLIPALTFVIAAIAG------ 123

Query: 119 WPILQVLKKSSNSLLKTNC 137
           +  + +  +S+  +L T C
Sbjct: 124 FEKVDISLRSTAKILGTVC 142

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574599|ref|XP_002528210.1| Auxin-induced protein 5NG4, putative [Ricinus communis] gi|223532371|gb|EEF34167.1| Auxin-induced protein 5NG4, putative [Ricinus communis]

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/113 (63%), Positives = 88/113 (77%), Gaps = 1/113 (0%)

Query: 1   MAMLGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFS-RRKSRIPPLG 59
           +AM+GLQ  YAGV++FT AAL+QGM+ R  VVYRQ +ATLI+AP+AY S RRK R+  LG
Sbjct: 11  IAMVGLQFIYAGVSLFTRAALVQGMNTRVFVVYRQGIATLIMAPLAYLSVRRKPRMSSLG 70

Query: 60  FKSFSLIFLTALIVITINQNMFYEGLYLASSTMGTAMGNLIPAITFVLAAIVG 112
            K F+ I L +LI IT NQN ++EGL+L SST  TAM NLIPAITFV+AAI G
Sbjct: 71  LKFFAWISLASLIGITANQNAYFEGLFLTSSTATTAMTNLIPAITFVMAAIFG 123

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	174
TAIR|locus:2118686	373	UMAMIT34 "AT4G30420" [Arabidop	0.821	0.383	0.503	1.3e-29
TAIR|locus:2039792	374	UMAMIT14 "AT2G39510" [Arabidop	0.626	0.291	0.418	1.2e-24
TAIR|locus:2132982	359	UMAMIT33 "Usually multiple aci	0.643	0.311	0.504	1.2e-24
TAIR|locus:2169414	402	UMAMIT9 "Usually multiple acid	0.620	0.268	0.440	9.1e-24
TAIR|locus:2201148	389	UMAMIT19 "Usually multiple aci	0.626	0.280	0.427	1.1e-19
UNIPROTKB|Q6J163	410	Q6J163 "Auxin-induced protein	0.614	0.260	0.398	8.3e-19
TAIR|locus:2102028	369	UMAMIT6 "Usually multiple acid	0.637	0.300	0.366	2.5e-18
TAIR|locus:2012255	374	UMAMIT25 "Usually multiple aci	0.626	0.291	0.381	1.9e-17
TAIR|locus:2102629	377	UMAMIT10 "Usually multiple aci	0.620	0.286	0.449	1.1e-16
TAIR|locus:2058460	394	UMAMIT11 "Usually multiple aci	0.620	0.274	0.458	1.7e-16

TAIR|locus:2118686 UMAMIT34 "AT4G30420" [Arabidopsis thaliana (taxid:3702)]

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 76/151 (50%), Positives = 104/151 (68%)

Query:     1 MAMLGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIP--PL 58
             MAM  +Q  YAGV +F  A L+ G+SPR  ++YRQA AT+ I P  Y SRRKS+I    L
Sbjct:     1 MAMTMIQLCYAGVTLFARATLVHGLSPRVFILYRQAFATIFIFPFLYLSRRKSKIAISSL 60

Query:    59 GFKSFSLIFLTALIVITINQNMFYEGLYLASSTMGTAMGNLIPAITFVLAAIVGSCCWSL 118
               KSFSLIFL +LI ITINQN++ EGLYL SS+MG+A+GN+IPAITF+++ + G    +L
Sbjct:    61 DLKSFSLIFLVSLIGITINQNLYLEGLYLTSSSMGSAVGNIIPAITFLISFLAGYEKLNL 120

Query:   119 WPILQVLKKSSNSLLKTNCVS--VSLTVCMG 147
               I + L K + ++L   CV+  +S+T+  G
Sbjct:   121 RDI-RGLAKIAGTIL---CVAGAISMTLLRG 147

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2039792 UMAMIT14 "AT2G39510" [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
 Identities = 46/110 (41%), Positives = 65/110 (59%)

Query:     1 MAMLGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGF 60
             + ++ LQ  YAG+++    AL QGMSP     YR  +AT+ IAP AYF  RK R P +  
Sbjct:    10 ITVVSLQFGYAGLSIIAKFALNQGMSPHVLASYRHIVATIFIAPFAYFLDRKIR-PKMTL 68

Query:    61 KSFSLIFLTALIVITINQNMFYEGLYLASSTMGTAMGNLIPAITFVLAAI 110
               F  I L  L+  TI+QN++Y G+   S+T   AM N++PA  F++A I
Sbjct:    69 SIFFKILLLGLLEPTIDQNLYYTGMKYTSATFTAAMTNVLPAFAFIMAWI 118

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2132982 UMAMIT33 "Usually multiple acids move in and out Transporters 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 57/113 (50%), Positives = 84/113 (74%)

Query:     1 MAMLGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSR-RKSRIPPLG 59
             +A++ LQ + AGVA+FT AA ++G++P   VVYRQA+ATL I PI++ S  RK   P LG
Sbjct:    10 LALVMLQFTSAGVALFTKAAFMEGLNPTVFVVYRQAIATLFICPISFISAWRKENKPSLG 69

Query:    60 FKSFSLIFLTALIVITINQNMFYEGLYLASSTMGTAMGNLIPAITFVLAAIVG 112
              + F  + LTA+I +T+NQN +++G+ L+SS+M  AM NLIPA+TF+++ IVG
Sbjct:    70 VRGFWWVALTAVIGVTVNQNAYFKGIDLSSSSMACAMTNLIPAVTFIISIIVG 122

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2169414 UMAMIT9 "Usually multiple acids move in and out Transporters 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 9.1e-24, Sum P(2) = 9.1e-24
 Identities = 48/109 (44%), Positives = 68/109 (62%)

Query:     2 AMLGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGFK 61
             AM+ LQ  YAG+ + T  +L  GMS    VVYR A+AT +IAP A+F  RK++ P + F 
Sbjct:    21 AMISLQFGYAGMNIITKISLNTGMSHYVLVVYRHAIATAVIAPFAFFFERKAQ-PKITFS 79

Query:    62 SFSLIFLTALIVITINQNMFYEGLYLASSTMGTAMGNLIPAITFVLAAI 110
              F  +F+  L+   I+QN +Y GL   S T   AM N++PA+TF+LA +
Sbjct:    80 IFMQLFILGLLGPVIDQNFYYMGLKYTSPTFSCAMSNMLPAMTFILAVL 128

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2201148 UMAMIT19 "Usually multiple acids move in and out Transporters 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 215 (80.7 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
 Identities = 47/110 (42%), Positives = 67/110 (60%)

Query:     1 MAMLGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGF 60
             +AM+ +Q  YAG+ + T  +L  GM+     VYR A+AT +IAP A F  RK R P + F
Sbjct:    13 LAMISMQFGYAGMYIITMVSLKHGMNHYVLAVYRHAIATAVIAPFALFHERKIR-PKMTF 71

Query:    61 KSFSLIFLTALIVITINQNMFYEGLYLASSTMGTAMGNLIPAITFVLAAI 110
             + F  I L   I   ++QN++Y G+   S+T  +A  N++PAITFVLA I
Sbjct:    72 RIFLQIALLGFIEPVLDQNLYYVGMTYTSATFASATANVLPAITFVLAII 121

GO:0016020 "membrane" evidence=IEA;ISS

UNIPROTKB|Q6J163 Q6J163 "Auxin-induced protein 5NG4" [Pinus taeda (taxid:3352)]

 Score = 165 (63.1 bits), Expect = 8.3e-19, Sum P(2) = 8.3e-19
 Identities = 43/108 (39%), Positives = 57/108 (52%)

Query:     2 AMLGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGFK 61
             AML LQ  YAG  + + AAL  G+S     VYR  +A ++I P AYF  +K R P L   
Sbjct:    22 AMLALQFGYAGFHIVSRAALNMGVSKVVFPVYRNILALMLIGPCAYFLEKKER-PALTLS 80

Query:    62 SFSLIFLTALIVITINQNMFYEGLYLASSTMGTAMGNLIPAITFVLAA 109
                  FL AL  IT    +    + L   T  +A+ N +PAITF++AA
Sbjct:    81 FLIQFFLLALCGITGQSRILSLRIVLHIPTFASAIQNSVPAITFIMAA 128

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0005938 "cell cortex" evidence=IDA

GO:0006810 "transport" evidence=NAS

GO:0009734 "auxin mediated signaling pathway" evidence=IDA

TAIR|locus:2102028 UMAMIT6 "Usually multiple acids move in and out Transporters 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 2.5e-18, Sum P(2) = 2.5e-18
 Identities = 41/112 (36%), Positives = 62/112 (55%)

Query:     1 MAMLGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGF 60
             +AM+  Q  YAG  V    AL  G+S     +YR  +A  ++AP AYF  +K R P +  
Sbjct:    12 IAMVVFQTGYAGNHVIMRYALNLGVSKLVFPLYRTIVAFSVLAPSAYFLEKKER-PAMKI 70

Query:    61 KSFSLIFLTALIVITINQNMFYEGLYLASSTMGTAMGNLIPAITFVLAAIVG 112
                   FL  L+ IT+NQ  +  GL   S T  +A  N++PA++F++AA++G
Sbjct:    71 SFLIQFFLLGLVGITLNQGFYIFGLDNTSPTFASATENVVPAVSFLMAALLG 122

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009062 "fatty acid catabolic process" evidence=RCA

TAIR|locus:2012255 UMAMIT25 "Usually multiple acids move in and out Transporters 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 1.9e-17, Sum P(2) = 1.9e-17
 Identities = 42/110 (38%), Positives = 67/110 (60%)

Query:     1 MAMLGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGF 60
             +AM+ +Q  YAG+ + +  A+  GM P   V YRQ  AT+   P+A+F  RK+R P +  
Sbjct:    10 LAMVLVQIGYAGMNITSKMAMEAGMKPLILVAYRQIFATIATFPVAFFLERKTR-PKITL 68

Query:    61 KSFSLIFLTALIVITINQNMFYEGLYLASSTMGTAMGNLIPAITFVLAAI 110
             +    +F  ++   T NQ +++ GL  +S T+  A+ NL+PA+TF+LAAI
Sbjct:    69 RILVQVFFCSITGATGNQVLYFVGLQNSSPTIACALTNLLPAVTFLLAAI 118

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2102629 UMAMIT10 "Usually multiple acids move in and out Transporters 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 49/109 (44%), Positives = 66/109 (60%)

Query:     2 AMLGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGFK 61
             AM+ LQ  YAG+ + T   L +GMS    V YR A AT  IAP A  S RK R P + F 
Sbjct:    14 AMVCLQFGYAGMNLVTKVVLDRGMSHYVLVAYRNAFATAAIAPFALLSERKVR-PKMTFP 72

Query:    62 SFSLIFLTALIVITINQNMFYEGLYLASSTMGTAMGNLIPAITFVLAAI 110
              F  IF+ AL+   I+QN++Y GL L S T   A+ N++PA+TF+++ I
Sbjct:    73 IFMQIFVLALLGPLIDQNLYYAGLKLTSPTFAGAVTNIVPALTFIISII 121

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2058460 UMAMIT11 "Usually multiple acids move in and out Transporters 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 209 (78.6 bits), Expect = 1.7e-16, P = 1.7e-16
 Identities = 50/109 (45%), Positives = 65/109 (59%)

Query:     2 AMLGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGFK 61
             AM+ LQ  YAG+ + T   L +GMS    V YR A AT  IAP A  S RK R   + F 
Sbjct:    14 AMVCLQFGYAGMNLVTKTVLDRGMSHYVLVAYRNAFATAAIAPFALLSERKVR-SKMTFP 72

Query:    62 SFSLIFLTALIVITINQNMFYEGLYLASSTMGTAMGNLIPAITFVLAAI 110
              F  IFL AL+   I+QN++Y GL L S T  +A+ N++PAIT +LA +
Sbjct:    73 IFMRIFLLALLGPVIDQNLYYIGLKLTSPTFSSAVSNIVPAITIILATL 121

GO:0005576 "extracellular region" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	174
PLN00411	358	PLN00411, PLN00411, nodulin MtN21 family protein;	7e-09

>gnl|CDD|177805 PLN00411, PLN00411, nodulin MtN21 family protein; Provisional

 Score = 53.4 bits (128), Expect = 7e-09
 Identities = 35/113 (30%), Positives = 60/113 (53%), Gaps = 9/113 (7%)

Query: 2   AMLGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGFK 61
           AML  + S  G++     A  +G++    + Y   +A+L++ P  +F+ R   +PPL   
Sbjct: 17  AMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVS 76

Query: 62  SFSLI----FLTALIVITINQNMFYEGLYLASSTMGTAMGNLIPAITFVLAAI 110
             S I    FL ++ VIT      Y G+  ++ T+ +A+ N+ PA+TF+LA I
Sbjct: 77  ILSKIGLLGFLGSMYVIT-----GYIGIEYSNPTLASAISNITPALTFILAII 124

Length = 358

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	174
PLN00411	358	nodulin MtN21 family protein; Provisional	99.91
PRK11272	292	putative DMT superfamily transporter inner membran	99.77
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.7
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.65
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.64
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.64
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.62
PRK11689	295	aromatic amino acid exporter; Provisional	99.61
PRK15430	296	putative chloramphenical resistance permease RarD;	99.59
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.48
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.35
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.2
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	98.96
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.96
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	98.92
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	98.84
PRK10532	293	threonine and homoserine efflux system; Provisiona	98.69
COG2510	140	Predicted membrane protein [Function unknown]	98.61
PRK11272	292	putative DMT superfamily transporter inner membran	98.5
PF13536	113	EmrE: Multidrug resistance efflux transporter	98.36
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.3
PRK11689	295	aromatic amino acid exporter; Provisional	98.27
PLN00411	358	nodulin MtN21 family protein; Provisional	98.24
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	98.21
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.2
COG2962	293	RarD Predicted permeases [General function predict	98.16
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	97.83
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	97.75
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	97.74
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	97.56
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	97.52
PRK15430	296	putative chloramphenical resistance permease RarD;	97.49
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	97.46
COG0697	292	RhaT Permeases of the drug/metabolite transporter	97.33
KOG4510	346	consensus Permease of the drug/metabolite transpor	97.22
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	96.64
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	96.49
KOG2765	416	consensus Predicted membrane protein [Function unk	96.0
KOG3912	372	consensus Predicted integral membrane protein [Gen	95.98
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	94.96
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	94.64
KOG1443	349	consensus Predicted integral membrane protein [Fun	94.4
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	94.24
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	94.05
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	92.36
KOG2766	336	consensus Predicted membrane protein [Function unk	89.91
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	89.59
KOG4510	346	consensus Permease of the drug/metabolite transpor	88.93
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	86.76
COG2962	293	RarD Predicted permeases [General function predict	85.25
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	83.13
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	82.12
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	80.29

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.91  E-value=8e-23  Score=171.36  Aligned_cols=165  Identities=25%  Similarity=0.424  Sum_probs=140.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 041218            2 AMLGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGFKSFSLIFLTALIVITINQNMF   81 (174)
Q Consensus         2 ~l~~~~~~wg~~~v~~K~~l~~~~~p~~l~~~R~~ia~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~~~   81 (174)
                      +|+..|+..++..++.|.+++.|++|+.+.++|+.+|+++++++++.++|+++.++.++|++.+++++|++| ..++.++
T Consensus        17 ~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g-~~~~~~~   95 (358)
T PLN00411         17 AMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLG-SMYVITG   95 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHH-HHHHHHH
Confidence            689999999999999999999999999999999999999999998776553332445678999999999999 7888899


Q ss_pred             HhHhhcchhhHHHHhhhhHHHHHHHHHHHH-------H------------------------------------------
Q 041218           82 YEGLYLASSTMGTAMGNLIPAITFVLAAIV-------G------------------------------------------  112 (174)
Q Consensus        82 ~~gl~~t~a~~asil~~~~Pv~~~lla~~~-------~------------------------------------------  112 (174)
                      +.|++|++|++++++.+++|++++++++++       +                                          
T Consensus        96 ~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~  175 (358)
T PLN00411         96 YIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFRQ  175 (358)
T ss_pred             HHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccccccccccccc
Confidence            999999999999999999999999998866       2                                          


Q ss_pred             ----------------------HHHHhHHHHHHhhhcchhhhhhhcCchhHHHHHHHHHHHHHHHHHHHHhCCC-CCCcc
Q 041218          113 ----------------------SCCWSLWPILQVLKKSSNSLLKTNCVSVSLTVCMGFFATIQSAIVTLFLEPD-PESWA  169 (174)
Q Consensus       113 ----------------------~~~~a~y~i~~~~~~~~~~~~~~~~~~l~~t~~~~l~g~~~~~~~~~~~~~~-~~~w~  169 (174)
                                            +++||+|++++|      +..++||++...++|++.++++.+.+.+...|++ .++|.
T Consensus       176 ~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~------~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~  249 (358)
T PLN00411        176 LSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQA------HIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWI  249 (358)
T ss_pred             cccccCCCcccHHHHHHHHHHHHHHHHHHHHHHH------HHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccce
Confidence                                  235677888888      8989997556889999999999998888877653 45676


Q ss_pred             cCCC
Q 041218          170 LHTN  173 (174)
Q Consensus       170 ~~~~  173 (174)
                      .++|
T Consensus       250 ~~~~  253 (358)
T PLN00411        250 IHFD  253 (358)
T ss_pred             eccc
Confidence            6655

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.77  E-value=4.2e-17  Score=133.09  Aligned_cols=149  Identities=12%  Similarity=0.162  Sum_probs=125.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 041218            2 AMLGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGFKSFSLIFLTALIVITINQNMF   81 (174)
Q Consensus         2 ~l~~~~~~wg~~~v~~K~~l~~~~~p~~l~~~R~~ia~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~~~   81 (174)
                      .++...++||.+++++|...+ ++||.+++++|+.+++++++++...++ + +  +.++|++.+....|.++...++.++
T Consensus        12 ~~~~~~~iWg~~~~~~K~~~~-~~~p~~~~~~R~~~a~l~ll~~~~~~~-~-~--~~~~~~~~~~~~~g~~~~~~~~~~~   86 (292)
T PRK11272         12 ALFALYIIWGSTYLVIRIGVE-SWPPLMMAGVRFLIAGILLLAFLLLRG-H-P--LPTLRQWLNAALIGLLLLAVGNGMV   86 (292)
T ss_pred             HHHHHHHHHhhHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHHHhC-C-C--CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            356788999999999999886 699999999999999999988765422 2 2  2246788888899999888889999


Q ss_pred             HhHh-hcchhhHHHHhhhhHHHHHHHHHHHHH----------------------------------------HHHHhHHH
Q 041218           82 YEGL-YLASSTMGTAMGNLIPAITFVLAAIVG----------------------------------------SCCWSLWP  120 (174)
Q Consensus        82 ~~gl-~~t~a~~asil~~~~Pv~~~lla~~~~----------------------------------------~~~~a~y~  120 (174)
                      +.+. +++++++++++.++.|+++.+++.+++                                        +++||.|.
T Consensus        87 ~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~~~e~~~~~~~~~~~la~~Gv~ll~~~~~~~~~~~G~l~~l~a~~~~a~~~  166 (292)
T PRK11272         87 TVAEHQNVPSGIAAVVVATVPLFTLCFSRLFGIRTRKLEWLGIAIGLAGIVLLNSGGNLSGNPWGAILILIASASWAFGS  166 (292)
T ss_pred             HHHHHccCcHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHhHHHHhcCcccccchHHHHHHHHHHHHHHHHH
Confidence            9999 999999999999999999999987655                                        89999999


Q ss_pred             HHHhhhcchhhhhhhcCchhHHHHHHHHHHHHHHHHHHHHhCC
Q 041218          121 ILQVLKKSSNSLLKTNCVSVSLTVCMGFFATIQSAIVTLFLEP  163 (174)
Q Consensus       121 i~~~~~~~~~~~~~~~~~~l~~t~~~~l~g~~~~~~~~~~~~~  163 (174)
                      +..|      |..++.  +...+++++.+++..+.+.....++
T Consensus       167 ~~~~------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  201 (292)
T PRK11272        167 VWSS------RLPLPV--GMMAGAAEMLAAGVVLLIASLLSGE  201 (292)
T ss_pred             HHHH------hcCCCc--chHHHHHHHHHHHHHHHHHHHHcCC
Confidence            9998      765433  5678899999999999888776543

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.70  E-value=1.8e-15  Score=120.63  Aligned_cols=141  Identities=17%  Similarity=0.220  Sum_probs=119.1

Q ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcchhHHHHHHHHHHHHHHHHHHHHHhHhhcch
Q 041218           10 YAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGFKSFSLIFLTALIVITINQNMFYEGLYLAS   89 (174)
Q Consensus        10 wg~~~v~~K~~l~~~~~p~~l~~~R~~ia~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~~gl~~t~   89 (174)
                      ||.+++..|..++++.||....+.|+..+.+.+.++...  +  .    +++++.+....|.++..+++.+++.|++|++
T Consensus         1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~--~--~----~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~   72 (260)
T TIGR00950         1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRR--R--P----PLKRLLRLLLLGALQIGVFYVLYFVAVKRLP   72 (260)
T ss_pred             CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh--c--c----CHhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            899999999999877999999999999998888776432  1  1    2456778889999999999999999999999


Q ss_pred             hhHHHHhhhhHHHHHHHHHHHHH-----------------------------------------HHHHhHHHHHHhhhcc
Q 041218           90 STMGTAMGNLIPAITFVLAAIVG-----------------------------------------SCCWSLWPILQVLKKS  128 (174)
Q Consensus        90 a~~asil~~~~Pv~~~lla~~~~-----------------------------------------~~~~a~y~i~~~~~~~  128 (174)
                      +++++++.++.|+++.+++.++.                                         +++|+.|.+..|    
T Consensus        73 ~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k----  148 (260)
T TIGR00950        73 VGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNLSINPAGLLLGLGSGISFALGTVLYK----  148 (260)
T ss_pred             hhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHh----
Confidence            99999999999999999998753                                         899999999999    


Q ss_pred             hhhhhhhcC-chhHHHHHHHHHHHHHHHHHHHHhCCC
Q 041218          129 SNSLLKTNC-VSVSLTVCMGFFATIQSAIVTLFLEPD  164 (174)
Q Consensus       129 ~~~~~~~~~-~~l~~t~~~~l~g~~~~~~~~~~~~~~  164 (174)
                        +..++++ ++...+.+++.++++.+.+.....+++
T Consensus       149 --~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  183 (260)
T TIGR00950       149 --RLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPN  183 (260)
T ss_pred             --HHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence              8877764 245666688999999998888776543

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.65  E-value=1.8e-14  Score=117.91  Aligned_cols=142  Identities=13%  Similarity=0.081  Sum_probs=118.1

Q ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcchhHHHHHHHHHHHHHHHHHHHHHhHhhcchhh
Q 041218           12 GVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGFKSFSLIFLTALIVITINQNMFYEGLYLASST   91 (174)
Q Consensus        12 ~~~v~~K~~l~~~~~p~~l~~~R~~ia~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~~gl~~t~a~   91 (174)
                      +..+..|.++++--+|..+.+.|+.++++.+.+. +..+.+++ ++.+++|+++++.+|+++ +.++.+.+.|++|++++
T Consensus        16 ~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~~s~s   92 (302)
T TIGR00817        16 YFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLS-WSSGLPKR-LKISSALLKLLLPVAIVH-TIGHVTSNVSLSKVAVS   92 (302)
T ss_pred             HHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHH-HHhCCCCC-CCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHhccHH
Confidence            3446789998754679999999999997776554 21122222 456788999999999997 88889999999999999


Q ss_pred             HHHHhhhhHHHHHHHHHHHHH----------------------------------------HHHHhHHHHHHhhhcchhh
Q 041218           92 MGTAMGNLIPAITFVLAAIVG----------------------------------------SCCWSLWPILQVLKKSSNS  131 (174)
Q Consensus        92 ~asil~~~~Pv~~~lla~~~~----------------------------------------~~~~a~y~i~~~~~~~~~~  131 (174)
                      +++++.++.|+++.++++++.                                        +++|++|.+..|      |
T Consensus        93 ~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k------~  166 (302)
T TIGR00817        93 FTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTELSFNWAGFLSAMISNITFVSRNIFSK------K  166 (302)
T ss_pred             HHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHHHHHHHHH------H
Confidence            999999999999999998764                                        899999999999      8


Q ss_pred             hhh--hcCchhHHHHHHHHHHHHHHHHHHHHhCC
Q 041218          132 LLK--TNCVSVSLTVCMGFFATIQSAIVTLFLEP  163 (174)
Q Consensus       132 ~~~--~~~~~l~~t~~~~l~g~~~~~~~~~~~~~  163 (174)
                      ..+  ++ |+..++.|++..|++.++|++...|+
T Consensus       167 ~~~~~~~-~~~~~~~~~~~~~~~~l~p~~~~~~~  199 (302)
T TIGR00817       167 AMTIKSL-DKTNLYAYISIMSLFLLSPPAFITEG  199 (302)
T ss_pred             hhccCCC-CcccHHHHHHHHHHHHHHHHHHHHcc
Confidence            887  67 58999999999999999999887663

specificities overlap.

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.64  E-value=3.2e-14  Score=116.26  Aligned_cols=146  Identities=12%  Similarity=0.156  Sum_probs=118.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 041218            2 AMLGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGFKSFSLIFLTALIVITINQNMF   81 (174)
Q Consensus         2 ~l~~~~~~wg~~~v~~K~~l~~~~~p~~l~~~R~~ia~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~~~   81 (174)
                      .++++.+.|+++..++|.+.++ +||..+.++|+.+|+++++++..  ++++   +.++|++......|++. ...+.++
T Consensus        16 ~~~la~~~~~~~~~~~K~~~~~-~~~~~~~~~R~~~a~l~l~~~~~--~~~~---~~~~~~~~~~~~~g~~~-~~~~~~~   88 (293)
T PRK10532         16 LLLIAMASIQSGASLAKSLFPL-VGAPGVTALRLALGTLILIAIFK--PWRL---RFAKEQRLPLLFYGVSL-GGMNYLF   88 (293)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHh--HHhc---cCCHHHHHHHHHHHHHH-HHHHHHH
Confidence            4678999999999999999975 99999999999999998887642  2221   23467788888888875 6667889


Q ss_pred             HhHhhcchhhHHHHhhhhHHHHHHHHHHH------------HH-------------------------HHHHhHHHHHHh
Q 041218           82 YEGLYLASSTMGTAMGNLIPAITFVLAAI------------VG-------------------------SCCWSLWPILQV  124 (174)
Q Consensus        82 ~~gl~~t~a~~asil~~~~Pv~~~lla~~------------~~-------------------------~~~~a~y~i~~~  124 (174)
                      +.|++|++++.++++.++.|+++.+++.-            .+                         +++|+.|.+..|
T Consensus        89 ~~al~~~~~~~a~~l~~t~Pi~~~ll~~~~~~~~~~~~i~~~Gv~li~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~r  168 (293)
T PRK10532         89 YLSIQTVPLGIAVALEFTGPLAVALFSSRRPVDFVWVVLAVLGLWFLLPLGQDVSHVDLTGAALALGAGACWAIYILSGQ  168 (293)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHheeeecCCCcccCChHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999988710            00                         899999999999


Q ss_pred             hhcchhhhhhhcCchhHHHHHHHHHHHHHHHHHHHHhC
Q 041218          125 LKKSSNSLLKTNCVSVSLTVCMGFFATIQSAIVTLFLE  162 (174)
Q Consensus       125 ~~~~~~~~~~~~~~~l~~t~~~~l~g~~~~~~~~~~~~  162 (174)
                            |..++++ +... .++.+++++.+.|+....+
T Consensus       169 ------~~~~~~~-~~~~-~~~~~~~~~~l~~~~~~~~  198 (293)
T PRK10532        169 ------RAGAEHG-PATV-AIGSLIAALIFVPIGALQA  198 (293)
T ss_pred             ------HHhccCC-chHH-HHHHHHHHHHHHHHHHHcc
Confidence                  8887874 6665 5677888888888877654

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.64  E-value=3.2e-14  Score=116.46  Aligned_cols=144  Identities=15%  Similarity=0.150  Sum_probs=109.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 041218            3 MLGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGFKSFSLIFLTALIVITINQNMFY   82 (174)
Q Consensus         3 l~~~~~~wg~~~v~~K~~l~~~~~p~~l~~~R~~ia~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~   82 (174)
                      .+++.++||.+++++|.+++ ++||.++.++|+.++++.++++.   .++    +.+++   .....|+++...++.+++
T Consensus         9 ~l~~~~~Wg~~~~~~k~~~~-~~~p~~~~~~R~~~a~~~l~~~~---~~~----~~~~~---~~~~~g~~~~~~~~~~~~   77 (299)
T PRK11453          9 ALLVVVVWGLNFVVIKVGLH-NMPPLMLAGLRFMLVAFPAIFFV---ARP----KVPLN---LLLGYGLTISFGQFAFLF   77 (299)
T ss_pred             HHHHHHHHhhhHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHHh---cCC----CCchH---HHHHHHHHHHHHHHHHHH
Confidence            56788999999999999986 49999999999999887766553   111    11222   345557766677777888


Q ss_pred             hHhhc-chhhHHHHhhhhHHHHHHHHHHHHH-------------------------------------------HHHHhH
Q 041218           83 EGLYL-ASSTMGTAMGNLIPAITFVLAAIVG-------------------------------------------SCCWSL  118 (174)
Q Consensus        83 ~gl~~-t~a~~asil~~~~Pv~~~lla~~~~-------------------------------------------~~~~a~  118 (174)
                      .+++| .++++++++.++.|+++.++++++.                                           +++|+.
T Consensus        78 ~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~~~~~~~G~~l~l~aal~~a~  157 (299)
T PRK11453         78 CAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNGQHVAMLGFMLTLAAAFSWAC  157 (299)
T ss_pred             HHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCCcchhHHHHHHHHHHHHHHHH
Confidence            99998 4789999999999999999998763                                           899999


Q ss_pred             HHHHHhhhcchhhhhhhcCc--hhHHHHHHHHHHHHHHHHHHHHhCC
Q 041218          119 WPILQVLKKSSNSLLKTNCV--SVSLTVCMGFFATIQSAIVTLFLEP  163 (174)
Q Consensus       119 y~i~~~~~~~~~~~~~~~~~--~l~~t~~~~l~g~~~~~~~~~~~~~  163 (174)
                      |.+++|      |..+++++  ....+.++++.+.+.....+...|+
T Consensus       158 ~~v~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (299)
T PRK11453        158 GNIFNK------KIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDG  198 (299)
T ss_pred             HHHHHH------HHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999      87766542  3455677888777766655555543

>TIGR00688 rarD rarD protein

Probab=99.62  E-value=5.2e-14  Score=112.59  Aligned_cols=120  Identities=12%  Similarity=0.088  Sum_probs=93.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcc----CCCCcchhH-HHHHHHHHHHHHHH
Q 041218            2 AMLGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKS----RIPPLGFKS-FSLIFLTALIVITI   76 (174)
Q Consensus         2 ~l~~~~~~wg~~~v~~K~~l~~~~~p~~l~~~R~~ia~~~l~~~~~~~~~~~----~~~~~~~~~-~~~~~~lg~~g~~~   76 (174)
                      .++++.++||.+.+++|. .. ++||.++.++|+.+|++++.++...+++++    +.++.++++ +..+...|++ ...
T Consensus         6 ~~i~a~~~wg~~~~~~k~-~~-~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~   82 (256)
T TIGR00688         6 VSLLASFLFGYMYYYSKL-LK-PLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL-IGF   82 (256)
T ss_pred             HHHHHHHHHHHHHHHHHH-hc-cCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH-HHH
Confidence            367888999999999998 44 499999999999999988877654433211    101122233 3344555555 589


Q ss_pred             HHHHHHhHhhcchhhHHHHhhhhHHHHHHHHHHHHH------------------------------------HHHHhHHH
Q 041218           77 NQNMFYEGLYLASSTMGTAMGNLIPAITFVLAAIVG------------------------------------SCCWSLWP  120 (174)
Q Consensus        77 ~~~~~~~gl~~t~a~~asil~~~~Pv~~~lla~~~~------------------------------------~~~~a~y~  120 (174)
                      ++.+++.+++++++++|+++.++.|+++.++++++.                                    ++||+.|.
T Consensus        83 ~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~~~~~~~l~aa~~~a~~~  162 (256)
T TIGR00688        83 NWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKGSLPWEALVLAFSFTAYG  162 (256)
T ss_pred             HHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998764                                    78999999


Q ss_pred             HHHh
Q 041218          121 ILQV  124 (174)
Q Consensus       121 i~~~  124 (174)
                      +..|
T Consensus       163 i~~~  166 (256)
T TIGR00688       163 LIRK  166 (256)
T ss_pred             HHHh
Confidence            9988

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.61  E-value=4.4e-14  Score=115.55  Aligned_cols=102  Identities=11%  Similarity=0.060  Sum_probs=79.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 041218            2 AMLGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGFKSFSLIFLTALIVITINQNMF   81 (174)
Q Consensus         2 ~l~~~~~~wg~~~v~~K~~l~~~~~p~~l~~~R~~ia~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~~~   81 (174)
                      .++++.++||+++++.|.++++ +||+.+.++|+.+|+++++++.   +++    +.+ ++.++..+.|.++...++.++
T Consensus         8 ~~l~a~~~Wg~~~~~~k~~~~~-~~P~~~~~~R~~~a~l~l~~~~---~~~----~~~-~~~~~~~~~~~l~~~~~~~~~   78 (295)
T PRK11689          8 IGLIAILLWSTMVGLIRGVSES-LGPVGGAAMIYSVSGLLLLLTV---GFP----RLR-QFPKRYLLAGGLLFVSYEICL   78 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcc-CChHHHHHHHHHHHHHHHHHHc---ccc----ccc-cccHHHHHHHhHHHHHHHHHH
Confidence            3567889999999999998865 9999999999999999988752   111    111 112234556777788899988


Q ss_pred             HhHhhc----chhhHHHHhhhhHHHHHHHHHHHHH
Q 041218           82 YEGLYL----ASSTMGTAMGNLIPAITFVLAAIVG  112 (174)
Q Consensus        82 ~~gl~~----t~a~~asil~~~~Pv~~~lla~~~~  112 (174)
                      +.|++|    +++++++++.++.|+++.++++++.
T Consensus        79 ~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~  113 (295)
T PRK11689         79 ALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFN  113 (295)
T ss_pred             HHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHh
Confidence            888865    5778899999999999999987653

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.59  E-value=8.5e-14  Score=113.88  Aligned_cols=144  Identities=10%  Similarity=0.025  Sum_probs=108.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccC-CC-CcchhHHHHHHHHHHHHHHHHHHH
Q 041218            3 MLGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSR-IP-PLGFKSFSLIFLTALIVITINQNM   80 (174)
Q Consensus         3 l~~~~~~wg~~~v~~K~~l~~~~~p~~l~~~R~~ia~~~l~~~~~~~~~~~~-~~-~~~~~~~~~~~~lg~~g~~~~~~~   80 (174)
                      ++++.++||.+++.+|.. . ++||.++.++|+.+|.+++.++...+++++. .+ ..+++++ .....|.++...++.+
T Consensus        13 ~l~a~~~wg~~~~~~k~~-~-~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~   89 (296)
T PRK15430         13 ALAAYFIWGIAPAYFKLI-Y-YVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKI-FMLAVSAVLIGGNWLL   89 (296)
T ss_pred             HHHHHHHHHHHHHHHHHh-c-CCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHH-HHHHHHHHHHHHHHHH
Confidence            567889999999999974 4 5999999999999999888877654322111 00 1123443 2345788888999999


Q ss_pred             HHhHhhcchhhHHHHhhhhHHHHHHHHHHHHH------------------------------------HHHHhHHHHHHh
Q 041218           81 FYEGLYLASSTMGTAMGNLIPAITFVLAAIVG------------------------------------SCCWSLWPILQV  124 (174)
Q Consensus        81 ~~~gl~~t~a~~asil~~~~Pv~~~lla~~~~------------------------------------~~~~a~y~i~~~  124 (174)
                      +++|++++++++++++.++.|+++.++++++.                                    +++||.|.+..|
T Consensus        90 ~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~l~aa~~~a~~~i~~r  169 (296)
T PRK15430         90 FIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGSLPIIALGLAFSFAFYGLVRK  169 (296)
T ss_pred             HHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999988763                                    889999999888


Q ss_pred             hhcchhhhhhhc-CchhHHHHHHHHHHHHHHH
Q 041218          125 LKKSSNSLLKTN-CVSVSLTVCMGFFATIQSA  155 (174)
Q Consensus       125 ~~~~~~~~~~~~-~~~l~~t~~~~l~g~~~~~  155 (174)
                            +..++. ++....+.|++.++.....
T Consensus       170 ------~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (296)
T PRK15430        170 ------KIAVEAQTGMLIETMWLLPVAAIYLF  195 (296)
T ss_pred             ------hcCCCCchhHHHHHHHHHHHHHHHHH
Confidence                  654322 1345566777777766543

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.48  E-value=5.6e-12  Score=105.66  Aligned_cols=142  Identities=14%  Similarity=0.079  Sum_probs=111.4

Q ss_pred             HHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCc--chhHHHHHHHHHHHHHHHHHHHHHhHhhcc
Q 041218           12 GVAVFTGAALLQGMS-PRGSVVYRQAMATLIIAPIAYFSRRKSRIPPL--GFKSFSLIFLTALIVITINQNMFYEGLYLA   88 (174)
Q Consensus        12 ~~~v~~K~~l~~~~~-p~~l~~~R~~ia~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~lg~~g~~~~~~~~~~gl~~t   88 (174)
                      ...+..|.++++ +| |..+.++|++++.++...+.. .+.+++ ++.  .++++..++.+|+++...+.. .+.|++++
T Consensus        63 ~~~~~nK~vl~~-~~~P~~l~~~~~~~~~l~~~~~~~-~~~~~~-~~~~~~~~~~~~llp~gl~~~~~~~~-~~~sl~~~  138 (350)
T PTZ00343         63 LYVVDNKLALNM-LPLPWTISSLQLFVGWLFALLYWA-TGFRKI-PRIKSLKLFLKNFLPQGLCHLFVHFG-AVISMGLG  138 (350)
T ss_pred             HHHHHHHHHHHh-CChhHHHHHHHHHHHHHHHHHHHH-hCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHhhc
Confidence            345668999876 99 999999999999876554432 222222 233  245788999999999777555 56999999


Q ss_pred             hhhHHHHhhhhHHHHHHHHHHHHH----------------------------------------HHHHhHHHHHHhhhcc
Q 041218           89 SSTMGTAMGNLIPAITFVLAAIVG----------------------------------------SCCWSLWPILQVLKKS  128 (174)
Q Consensus        89 ~a~~asil~~~~Pv~~~lla~~~~----------------------------------------~~~~a~y~i~~~~~~~  128 (174)
                      +++.++++.++.|++++++++++.                                        +++|+.|.++.|    
T Consensus       139 svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~~~~~~G~~~~l~s~~~~a~~~i~~k----  214 (350)
T PTZ00343        139 AVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKELHFTWLAFWCAMLSNLGSSLRSIFAK----  214 (350)
T ss_pred             cHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccchhHHHHHHHHHHHHHHHHHHHHHHH----
Confidence            999999999999999999998764                                        889999999999    


Q ss_pred             hhhhhhhcC------chhHHHHHHHHHHHHHHHHHHHHhCC
Q 041218          129 SNSLLKTNC------VSVSLTVCMGFFATIQSAIVTLFLEP  163 (174)
Q Consensus       129 ~~~~~~~~~------~~l~~t~~~~l~g~~~~~~~~~~~~~  163 (174)
                        |..++++      ++.....++.++|++.++|+....|.
T Consensus       215 --~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~  253 (350)
T PTZ00343        215 --KTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEG  253 (350)
T ss_pred             --HHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence              7776542      35567777899999999999886653

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.35  E-value=1.5e-11  Score=86.79  Aligned_cols=100  Identities=18%  Similarity=0.279  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcchhHHHHHHHHHHHHHHHHHHHHHhHhhc
Q 041218            8 CSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGFKSFSLIFLTALIVITINQNMFYEGLYL   87 (174)
Q Consensus         8 ~~wg~~~v~~K~~l~~~~~p~~l~~~R~~ia~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~~gl~~   87 (174)
                      ++||.+.+..|...++ +||....++|+.++++ ++++....++++. ++.+.+++......|.++....+.+++.|+++
T Consensus         1 ~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   77 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKK-ISPLSITFWRFLIAGI-LLILLLILGRKPF-KNLSPRQWLWLLFLGLLGTALAYLLYFYALKY   77 (126)
T ss_pred             ceeeeHHHHHHHHhcc-CCHHHHHHHHHHHHHH-HHHHHHhhccccc-cCCChhhhhhhhHhhccceehHHHHHHHHHHh
Confidence            4799999999998875 9999999999999997 6666555554432 35567888899999999889999999999999


Q ss_pred             chhhHHHHhhhhHHHHHHHHHHH
Q 041218           88 ASSTMGTAMGNLIPAITFVLAAI  110 (174)
Q Consensus        88 t~a~~asil~~~~Pv~~~lla~~  110 (174)
                      +++++++.+.++.|+++.+++++
T Consensus        78 ~~~~~~~~~~~~~pv~~~i~~~~  100 (126)
T PF00892_consen   78 ISASIVSILQYLSPVFAAILGWL  100 (126)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998764

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.20  E-value=1.4e-09  Score=88.21  Aligned_cols=106  Identities=8%  Similarity=0.006  Sum_probs=80.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 041218            3 MLGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGFKSFSLIFLTALIVITINQNMFY   82 (174)
Q Consensus         3 l~~~~~~wg~~~v~~K~~l~~~~~p~~l~~~R~~ia~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~   82 (174)
                      .+++.++|+...+.+|...++ -++  ...++...+++++.|+...+.++.. .+..+++++.....+.++...++.+++
T Consensus         6 ~~~aa~~~a~~~~~~k~~~~~-~~~--~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (281)
T TIGR03340         6 VVFSALMHAGWNLMAKSHADK-EPD--FLWWALLAHSVLLTPYGLWYLAQVG-WSRLPATFWLLLAISAVANMVYFLGLA   81 (281)
T ss_pred             HHHHHHHHHHHHHHHhhcCCc-hhH--HHHHHHHHHHHHHHHHHHHhcccCC-CCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence            467889999999999976654 344  3588888888888887654321111 122234555666777778899999999


Q ss_pred             hHhhcchhhHHHHhhhhHHHHHHHHHHHHH
Q 041218           83 EGLYLASSTMGTAMGNLIPAITFVLAAIVG  112 (174)
Q Consensus        83 ~gl~~t~a~~asil~~~~Pv~~~lla~~~~  112 (174)
                      .|++++++++++.+.++.|+++.++++++.
T Consensus        82 ~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~  111 (281)
T TIGR03340        82 QAYHHADVGLVYPLARSSPLLVAIWATLTL  111 (281)
T ss_pred             HHHhcCChhhhhhHHhhhHHHHHHHHHHHH
Confidence            999999999999999999999999998753

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=98.96  E-value=1e-07  Score=79.38  Aligned_cols=149  Identities=18%  Similarity=0.220  Sum_probs=110.2

Q ss_pred             HHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcchhHHHHHHHHHHHHHHHHHHHHHhHhh
Q 041218            8 CSYAGVAVFTGAALLQGMS-PRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGFKSFSLIFLTALIVITINQNMFYEGLY   86 (174)
Q Consensus         8 ~~wg~~~v~~K~~l~~~~~-p~~l~~~R~~ia~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~~gl~   86 (174)
                      ++-.++...+...-+.|.+ |..-.+.-...-.++..+....++++++..+..+++|++.+++|++- ...+++...|.+
T Consensus        23 l~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~D-v~aN~~~v~a~~  101 (334)
T PF06027_consen   23 LCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLD-VEANYLVVLAYQ  101 (334)
T ss_pred             HHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHH-HHHHHHHHHHhh
Confidence            4556666676665555555 55444444444344444544443332221223356788888899887 466778899999


Q ss_pred             cchhhHHHHhhhhHHHHHHHHHHHHH-------------------------------------------------HHHHh
Q 041218           87 LASSTMGTAMGNLIPAITFVLAAIVG-------------------------------------------------SCCWS  117 (174)
Q Consensus        87 ~t~a~~asil~~~~Pv~~~lla~~~~-------------------------------------------------~~~~a  117 (174)
                      ||+.+.+.++..+.-+++++++++++                                                 ++.||
T Consensus       102 yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDll~l~~a~lya  181 (334)
T PF06027_consen  102 YTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDLLALLGAILYA  181 (334)
T ss_pred             cccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhHHHHHHHHHHHH
Confidence            99999999999999999999998764                                                 99999


Q ss_pred             HHHHHHhhhcchhhhhhhcCchhHHHHHHHHHHHHHHHHHHHHhCCC
Q 041218          118 LWPILQVLKKSSNSLLKTNCVSVSLTVCMGFFATIQSAIVTLFLEPD  164 (174)
Q Consensus       118 ~y~i~~~~~~~~~~~~~~~~~~l~~t~~~~l~g~~~~~~~~~~~~~~  164 (174)
                      +++++++      +..|++| ...+.++--++|.+.+.+...+.|++
T Consensus       182 ~~nV~~E------~~v~~~~-~~~~lg~~Glfg~ii~~iq~~ile~~  221 (334)
T PF06027_consen  182 VSNVLEE------KLVKKAP-RVEFLGMLGLFGFIISGIQLAILERS  221 (334)
T ss_pred             HHHHHHH------HhcccCC-HHHHHHHHHHHHHHHHHHHHHheehh
Confidence            9999999      9999985 78899999999999998887777764

Some of the sequences in this family are annotated as putative membrane proteins.

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.96  E-value=1.6e-07  Score=75.03  Aligned_cols=135  Identities=18%  Similarity=0.240  Sum_probs=100.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 041218            3 MLGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGFKSFSLIFLTALIVITINQNMFY   82 (174)
Q Consensus         3 l~~~~~~wg~~~v~~K~~l~~~~~p~~l~~~R~~ia~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~   82 (174)
                      +++..+.|+.+....|...+...++......|+.++.....+.... ++..+  +...+++.+..+.+.++...++.+++
T Consensus        12 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (292)
T COG0697          12 LLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLL-EPRGL--RPALRPWLLLLLLALLGLALPFLLLF   88 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHh-hcccc--cccccchHHHHHHHHHHHHHHHHHHH
Confidence            4567799999999999987543667777777999998884444321 11111  11223355778888899999999999


Q ss_pred             hHhhcchhhHHHHhhhhHHHHHHHHHH-HH-H------------------------------------------HHHHhH
Q 041218           83 EGLYLASSTMGTAMGNLIPAITFVLAA-IV-G------------------------------------------SCCWSL  118 (174)
Q Consensus        83 ~gl~~t~a~~asil~~~~Pv~~~lla~-~~-~------------------------------------------~~~~a~  118 (174)
                      .++++++++.++.+.++.|+++.+++. ++ +                                          +++|++
T Consensus        89 ~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~~~~g~~~~l~a~~~~a~  168 (292)
T COG0697          89 LALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGILSLLGLLLALAAALLWAL  168 (292)
T ss_pred             HHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999996 54 3                                          677888


Q ss_pred             HHHHHhhhcchhhhhhhcCchhHHHH-HHHH
Q 041218          119 WPILQVLKKSSNSLLKTNCVSVSLTV-CMGF  148 (174)
Q Consensus       119 y~i~~~~~~~~~~~~~~~~~~l~~t~-~~~l  148 (174)
                      +.+..|      +.. +. ++..... ++..
T Consensus       169 ~~~~~~------~~~-~~-~~~~~~~~~~~~  191 (292)
T COG0697         169 YTALVK------RLS-RL-GPVTLALLLQLL  191 (292)
T ss_pred             HHHHHH------Hhc-CC-ChHHHHHHHHHH
Confidence            888888      766 55 3566665 5655

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=98.92  E-value=4.4e-08  Score=77.97  Aligned_cols=105  Identities=16%  Similarity=0.231  Sum_probs=87.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 041218            3 MLGLQCSYAGVAVFTGAALLQGMS--PRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGFKSFSLIFLTALIVITINQNM   80 (174)
Q Consensus         3 l~~~~~~wg~~~v~~K~~l~~~~~--p~~l~~~R~~ia~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~~   80 (174)
                      .+++.++|+.+.+..|...++ .+  +..+..+|+.++.+++.++.+..++.   ++.+.+++..+..+|+++....+.+
T Consensus       133 ~l~a~~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  208 (260)
T TIGR00950       133 GLGSGISFALGTVLYKRLVKK-EGPELLQFTGWVLLLGALLLLPFAWFLGPN---PQALSLQWGALLYLGLIGTALAYFL  208 (260)
T ss_pred             HHHHHHHHHHHHHHHhHHhhc-CCchHHHHHHHHHHHHHHHHHHHHHhcCCC---CCcchHHHHHHHHHHHHHHHHHHHH
Confidence            467889999999999998753 66  44566678999999998887653322   2335678888899999999999999


Q ss_pred             HHhHhhcchhhHHHHhhhhHHHHHHHHHHHH
Q 041218           81 FYEGLYLASSTMGTAMGNLIPAITFVLAAIV  111 (174)
Q Consensus        81 ~~~gl~~t~a~~asil~~~~Pv~~~lla~~~  111 (174)
                      ++.++++.+++.++.+.++.|+++.++++++
T Consensus       209 ~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~  239 (260)
T TIGR00950       209 WNKGLTLVDPSAASILALAEPLVALLLGLLI  239 (260)
T ss_pred             HHHHHhcCCchHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999988743

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=98.84  E-value=1.2e-07  Score=75.35  Aligned_cols=135  Identities=14%  Similarity=0.146  Sum_probs=108.3

Q ss_pred             HHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcchhHHHHHHHHHHHHHHHHHHHHHhHhhcchhhH
Q 041218           13 VAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGFKSFSLIFLTALIVITINQNMFYEGLYLASSTM   92 (174)
Q Consensus        13 ~~v~~K~~l~~~~~p~~l~~~R~~ia~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~~gl~~t~a~~   92 (174)
                      ..-+.|..+.. +.|...+.+|..+++++++++.  |.++   .+.+++++..+...|..- ...|.+||.+++..+=+.
T Consensus        27 Gas~Ak~LFP~-vG~~g~t~lRl~~aaLIll~l~--RPwr---~r~~~~~~~~~~~yGvsL-g~MNl~FY~si~riPlGi   99 (292)
T COG5006          27 GASFAKSLFPL-VGAAGVTALRLAIAALILLALF--RPWR---RRLSKPQRLALLAYGVSL-GGMNLLFYLSIERIPLGI   99 (292)
T ss_pred             hHHHHHHHccc-cChhhHHHHHHHHHHHHHHHHh--hHHH---hccChhhhHHHHHHHHHH-HHHHHHHHHHHHhccchh
Confidence            34456777764 9999999999999999998873  3322   346678899999999875 566778899999999999


Q ss_pred             HHHhhhhHHHHHHHHHH-HHH------------------------------------HHHHhHHHHHHhhhcchhhhhhh
Q 041218           93 GTAMGNLIPAITFVLAA-IVG------------------------------------SCCWSLWPILQVLKKSSNSLLKT  135 (174)
Q Consensus        93 asil~~~~Pv~~~lla~-~~~------------------------------------~~~~a~y~i~~~~~~~~~~~~~~  135 (174)
                      +.-+..+-|+.+.+++. -.+                                    ..||+.|++.+|      |.-+.
T Consensus       100 AVAiEF~GPL~vA~~~sRr~~d~vwvaLAvlGi~lL~p~~~~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~------r~g~~  173 (292)
T COG5006         100 AVAIEFTGPLAVALLSSRRLRDFVWVALAVLGIWLLLPLGQSVWSLDPVGVALALGAGACWALYIVLGQ------RAGRA  173 (292)
T ss_pred             hhhhhhccHHHHHHHhccchhhHHHHHHHHHHHHhheeccCCcCcCCHHHHHHHHHHhHHHHHHHHHcc------hhccc
Confidence            99999999999987642 111                                    899999999998      87765


Q ss_pred             cCchhHHHHHHHHHHHHHHHHHHHHh
Q 041218          136 NCVSVSLTVCMGFFATIQSAIVTLFL  161 (174)
Q Consensus       136 ~~~~l~~t~~~~l~g~~~~~~~~~~~  161 (174)
                      -+ .-.-++..++++++..+|++.-.
T Consensus       174 ~~-g~~g~a~gm~vAaviv~Pig~~~  198 (292)
T COG5006         174 EH-GTAGVAVGMLVAALIVLPIGAAQ  198 (292)
T ss_pred             CC-CchHHHHHHHHHHHHHhhhhhhh
Confidence            53 67888999999999999998743

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=98.69  E-value=1.7e-06  Score=70.69  Aligned_cols=103  Identities=17%  Similarity=0.145  Sum_probs=81.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 041218            3 MLGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGFKSFSLIFLTALIVITINQNMFY   82 (174)
Q Consensus         3 l~~~~~~wg~~~v~~K~~l~~~~~p~~l~~~R~~ia~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~   82 (174)
                      .+++.+.|+.+.+..|+..+ +.+|...... ..++++++.++......  . ...+...+...+.+|+++..+.+.+++
T Consensus       153 ~l~aa~~~a~~~v~~r~~~~-~~~~~~~~~~-~~~~~~~l~~~~~~~~~--~-~~~~~~~~~~~l~lgv~~t~~~~~l~~  227 (293)
T PRK10532        153 ALGAGACWAIYILSGQRAGA-EHGPATVAIG-SLIAALIFVPIGALQAG--E-ALWHWSILPLGLAVAILSTALPYSLEM  227 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHhc-cCCchHHHHH-HHHHHHHHHHHHHHccC--c-ccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56788999999999999765 4888877544 45666777776654322  1 123445566667899999999999999


Q ss_pred             hHhhcchhhHHHHhhhhHHHHHHHHHHH
Q 041218           83 EGLYLASSTMGTAMGNLIPAITFVLAAI  110 (174)
Q Consensus        83 ~gl~~t~a~~asil~~~~Pv~~~lla~~  110 (174)
                      +++++.+|+.++++.++.|++..+++++
T Consensus       228 ~~~~~~~a~~as~~~~l~Pv~a~l~~~l  255 (293)
T PRK10532        228 IALTRLPTRTFGTLMSMEPALAAVSGMI  255 (293)
T ss_pred             HHHHhcChhHHHHHHHhHHHHHHHHHHH
Confidence            9999999999999999999999998874

>COG2510 Predicted membrane protein [Function unknown]

Probab=98.61  E-value=4.1e-07  Score=65.32  Aligned_cols=106  Identities=12%  Similarity=0.166  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcchhHHHHHHHHHHHHHHHHHHHHHh
Q 041218            4 LGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGFKSFSLIFLTALIVITINQNMFYE   83 (174)
Q Consensus         4 ~~~~~~wg~~~v~~K~~l~~~~~p~~l~~~R~~ia~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~~   83 (174)
                      ++++++||...++.|+.++ |+||..-.+.|..+....+..+....++.+.....++|.|..+.+-|+.+ .+--.+||.
T Consensus         9 LLsA~fa~L~~iF~KIGl~-~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~-glswl~Yf~   86 (140)
T COG2510           9 LLSALFAGLTPIFAKIGLE-GVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAG-GLSWLLYFR   86 (140)
T ss_pred             HHHHHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHH-HHHHHHHHH
Confidence            5678999999999999985 69999999999999998888887765554332235778888888888665 777788999


Q ss_pred             HhhcchhhHHHHhhhhHHHHHHHHHHHH
Q 041218           84 GLYLASSTMGTAMGNLIPAITFVLAAIV  111 (174)
Q Consensus        84 gl~~t~a~~asil~~~~Pv~~~lla~~~  111 (174)
                      ++|..+|+...-+-.+.|+++.++++++
T Consensus        87 ALk~G~as~VvPldk~svvl~~lls~lf  114 (140)
T COG2510          87 ALKKGKASRVVPLDKTSVVLAVLLSILF  114 (140)
T ss_pred             HHhcCCcceEEEcccccHHHHHHHHHHH
Confidence            9999999999999999999999998865

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=98.50  E-value=9.3e-06  Score=66.26  Aligned_cols=106  Identities=12%  Similarity=0.051  Sum_probs=84.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 041218            3 MLGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGFKSFSLIFLTALIVITINQNMFY   82 (174)
Q Consensus         3 l~~~~~~wg~~~v~~K~~l~~~~~p~~l~~~R~~ia~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~   82 (174)
                      .+++.++|+.+.+..|..- . -++.....+++.+++.++.++....+.... ...+.++|..+..+|+++....+.+++
T Consensus       155 ~l~a~~~~a~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~l~i~~s~~~~~l~~  231 (292)
T PRK11272        155 ILIASASWAFGSVWSSRLP-L-PVGMMAGAAEMLAAGVVLLIASLLSGERLT-ALPTLSGFLALGYLAVFGSIIAISAYM  231 (292)
T ss_pred             HHHHHHHHHHHHHHHHhcC-C-CcchHHHHHHHHHHHHHHHHHHHHcCCccc-ccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567899999999999853 3 345667789999999888887654332111 112457888899999999999999999


Q ss_pred             hHhhcchhhHHHHhhhhHHHHHHHHHHHH
Q 041218           83 EGLYLASSTMGTAMGNLIPAITFVLAAIV  111 (174)
Q Consensus        83 ~gl~~t~a~~asil~~~~Pv~~~lla~~~  111 (174)
                      .++++.++++++.+.++.|++..++++++
T Consensus       232 ~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~  260 (292)
T PRK11272        232 YLLRNVRPALATSYAYVNPVVAVLLGTGL  260 (292)
T ss_pred             HHHhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999988754

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=98.36  E-value=7.5e-06  Score=57.71  Aligned_cols=79  Identities=20%  Similarity=0.291  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhhccC-CCCcchhHHHHHHHHHHHHHHHHHHHHHhHhhcchhhHHHHhhhhHHHHHHHHHHH
Q 041218           32 VYRQAMATLIIAPIAYFSRRKSR-IPPLGFKSFSLIFLTALIVITINQNMFYEGLYLASSTMGTAMGNLIPAITFVLAAI  110 (174)
Q Consensus        32 ~~R~~ia~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~lg~~g~~~~~~~~~~gl~~t~a~~asil~~~~Pv~~~lla~~  110 (174)
                      .+|...+.+++..+...+++.++ .+..++|++.+....|+++...++.+++.|+++++ +.++.+.++.|+++.+++.+
T Consensus         2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~   80 (113)
T PF13536_consen    2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL   80 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence            58999999998887766443211 11223466777778899998899999999999999 58889999999999998874


Q ss_pred             H
Q 041218          111 V  111 (174)
Q Consensus       111 ~  111 (174)
                      +
T Consensus        81 ~   81 (113)
T PF13536_consen   81 F   81 (113)
T ss_pred             H
Confidence            3

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.30  E-value=4.3e-05  Score=62.52  Aligned_cols=97  Identities=11%  Similarity=0.071  Sum_probs=69.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcchhHHHHHHHHHHHH---HHHHHH
Q 041218            3 MLGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGFKSFSLIFLTALIV---ITINQN   79 (174)
Q Consensus         3 l~~~~~~wg~~~v~~K~~l~~~~~p~~l~~~R~~ia~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g---~~~~~~   79 (174)
                      .+++.++||.+.+..|...  |.++.++.  |..++.+++..+....+ +   ++.+.   ++....|+++   -...|.
T Consensus         6 ~lia~~~wGs~g~~~k~~~--g~~~~~~~--~~~~g~l~~~~~~~~~~-~---~~~~~---~~~~~~g~l~G~~w~ig~~   74 (290)
T TIGR00776         6 ALIPALFWGSFVLINVKIG--GGPYSQTL--GTTFGALILSIAIAIFV-L---PEFWA---LSIFLVGLLSGAFWALGQI   74 (290)
T ss_pred             HHHHHHHHhhhHHHHhccC--CCHHHHHH--HHHHHHHHHHHHHHHHh-C---Ccccc---cHHHHHHHHHHHHHHhhhh
Confidence            3567899999999999854  68888886  88888887766554432 1   12221   2333444444   677789


Q ss_pred             HHHhHhhcchhhHHHHhhh-hHHHHHHHHHHH
Q 041218           80 MFYEGLYLASSTMGTAMGN-LIPAITFVLAAI  110 (174)
Q Consensus        80 ~~~~gl~~t~a~~asil~~-~~Pv~~~lla~~  110 (174)
                      +++.++++++.+.|-.+.+ +.|+++.+.+.+
T Consensus        75 ~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~  106 (290)
T TIGR00776        75 NQFKSMRYMGVSKTMPISTGFQLVGGTLFGVI  106 (290)
T ss_pred             hHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHH
Confidence            9999999999999977776 777777777765

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PRK11689 aromatic amino acid exporter; Provisional

Probab=98.27  E-value=1.9e-05  Score=64.52  Aligned_cols=102  Identities=12%  Similarity=0.127  Sum_probs=74.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 041218            3 MLGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGFKSFSLIFLTALIVITINQNMFY   82 (174)
Q Consensus         3 l~~~~~~wg~~~v~~K~~l~~~~~p~~l~~~R~~ia~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~   82 (174)
                      ++++.++|+.+.+..|... ++.+|.....   ..+++.+.+.... ... .....+.+.|..+...|+ ...+.+.+++
T Consensus       161 ~l~aa~~~A~~~v~~k~~~-~~~~~~~~~~---~~~~~~l~~~~~~-~~~-~~~~~~~~~~~~l~~~~~-~t~~~~~l~~  233 (295)
T PRK11689        161 AFIGAFIWAAYCNVTRKYA-RGKNGITLFF---ILTALALWIKYFL-SPQ-PAMVFSLPAIIKLLLAAA-AMGFGYAAWN  233 (295)
T ss_pred             HHHHHHHHHHHHHHHhhcc-CCCCchhHHH---HHHHHHHHHHHHH-hcC-ccccCCHHHHHHHHHHHH-HHHHHHHHHH
Confidence            5678899999999999965 4578876532   3344444443322 221 112345567777777774 6688899999


Q ss_pred             hHhhcchhhHHHHhhhhHHHHHHHHHHHH
Q 041218           83 EGLYLASSTMGTAMGNLIPAITFVLAAIV  111 (174)
Q Consensus        83 ~gl~~t~a~~asil~~~~Pv~~~lla~~~  111 (174)
                      .++++.++++++.+.++.|++..++++++
T Consensus       234 ~al~~~~a~~~s~~~~l~Pv~a~i~~~~~  262 (295)
T PRK11689        234 VGILHGNMTLLATASYFTPVLSAALAALL  262 (295)
T ss_pred             HHHHccCHHHHHHHHHhHHHHHHHHHHHH
Confidence            99999999999999999999999988754

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=98.24  E-value=8e-05  Score=62.85  Aligned_cols=107  Identities=8%  Similarity=0.005  Sum_probs=76.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHHHHHHHHHHhhhccCC---CCcchhHHHHHHHHHHHHHHHHH
Q 041218            3 MLGLQCSYAGVAVFTGAALLQGMSP-RGSVVYRQAMATLIIAPIAYFSRRKSRI---PPLGFKSFSLIFLTALIVITINQ   78 (174)
Q Consensus         3 l~~~~~~wg~~~v~~K~~l~~~~~p-~~l~~~R~~ia~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~lg~~g~~~~~   78 (174)
                      ++++.+.|+.+.+..|..... .|| ....++...++++.+.+.....++....   ...+.. ...++..|+. ..+.+
T Consensus       194 ~l~aa~~wa~~~il~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~y~~i~-t~lay  270 (358)
T PLN00411        194 LTIQGIFVSVSFILQAHIMSE-YPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDIT-LITIVTMAII-TSVYY  270 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-cCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchH-HHHHHHHHHH-HHHHH
Confidence            466789999999999987764 655 4667777787777766655554432110   011222 2234455654 46778


Q ss_pred             HHHHhHhhcchhhHHHHhhhhHHHHHHHHHHHHH
Q 041218           79 NMFYEGLYLASSTMGTAMGNLIPAITFVLAAIVG  112 (174)
Q Consensus        79 ~~~~~gl~~t~a~~asil~~~~Pv~~~lla~~~~  112 (174)
                      .++++++++.+|+.++++.++.|+++.++++++.
T Consensus       271 ~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~L  304 (358)
T PLN00411        271 VIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFL  304 (358)
T ss_pred             HHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHh
Confidence            8999999999999999999999999999998764

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=98.21  E-value=0.00012  Score=59.95  Aligned_cols=109  Identities=11%  Similarity=0.134  Sum_probs=78.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHHHHHHHHHHhhhccC----CCCcchhHHHHHHHHHHHHHH
Q 041218            3 MLGLQCSYAGVAVFTGAALLQGMSP---RGSVVYRQAMATLIIAPIAYFSRRKSR----IPPLGFKSFSLIFLTALIVIT   75 (174)
Q Consensus         3 l~~~~~~wg~~~v~~K~~l~~~~~p---~~l~~~R~~ia~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~lg~~g~~   75 (174)
                      .+++.++|+.+.+..|...++ .++   .....+-..++.+.+.......++...    ....+.++|..++.+|+++..
T Consensus       148 ~l~aal~~a~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~  226 (299)
T PRK11453        148 TLAAAFSWACGNIFNKKIMSH-STRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFVATI  226 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHhcc-cCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHHHHHH
Confidence            467889999999999986543 332   333444444444433333322232110    013456788899999999999


Q ss_pred             HHHHHHHhHhhcchhhHHHHhhhhHHHHHHHHHHHHH
Q 041218           76 INQNMFYEGLYLASSTMGTAMGNLIPAITFVLAAIVG  112 (174)
Q Consensus        76 ~~~~~~~~gl~~t~a~~asil~~~~Pv~~~lla~~~~  112 (174)
                      ..+.+++.++++.++++++.+.++.|++..++++++.
T Consensus       227 ~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~l  263 (299)
T PRK11453        227 VGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLL  263 (299)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999988654

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.20  E-value=1.5e-05  Score=65.15  Aligned_cols=109  Identities=13%  Similarity=0.191  Sum_probs=78.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcch---------hHHHH-HHHHHH
Q 041218            3 MLGLQCSYAGVAVFTGAALLQ-GMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGF---------KSFSL-IFLTAL   71 (174)
Q Consensus         3 l~~~~~~wg~~~v~~K~~l~~-~~~p~~l~~~R~~ia~~~l~~~~~~~~~~~~~~~~~~---------~~~~~-~~~lg~   71 (174)
                      .+++.+.|+.+.+..|...++ ++||..+..+-...+++.+.|+....+.... ...+.         ..... .+..+.
T Consensus       150 ~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (302)
T TIGR00817       150 AMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPF-LPHGFMQAISGVNVTKIYTVSLVAAM  228 (302)
T ss_pred             HHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHH-HHHHHHHhhcccCchHHHHHHHHHHH
Confidence            467889999999999997651 5999999999999999999998765442111 00000         01111 223333


Q ss_pred             HHHHHHHHHHHhHhhcchhhHHHHhhhhHHHHHHHHHHHHH
Q 041218           72 IVITINQNMFYEGLYLASSTMGTAMGNLIPAITFVLAAIVG  112 (174)
Q Consensus        72 ~g~~~~~~~~~~gl~~t~a~~asil~~~~Pv~~~lla~~~~  112 (174)
                      .....++.+++.++++++|+.+++..++.|+++.++++++.
T Consensus       229 ~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~l  269 (302)
T TIGR00817       229 GFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFF  269 (302)
T ss_pred             HHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhc
Confidence            34445556778899999999999999999999999887653

specificities overlap.

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=98.16  E-value=0.0003  Score=57.21  Aligned_cols=106  Identities=12%  Similarity=0.063  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccC--CCCcchhHHHHHHHHHHHHHHHHHHHH
Q 041218            4 LGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSR--IPPLGFKSFSLIFLTALIVITINQNMF   81 (174)
Q Consensus         4 ~~~~~~wg~~~v~~K~~l~~~~~p~~l~~~R~~ia~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~lg~~g~~~~~~~~   81 (174)
                      +.+.++||......|.. + ++|+.++...|...+...++......++.+.  .-..++|.+....+.++. ...+-..|
T Consensus        13 l~Ay~lwG~lp~y~kll-~-~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~l-i~~nW~lf   89 (293)
T COG2962          13 LLAYLLWGLLPLYFKLL-E-PLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALL-IGLNWWLF   89 (293)
T ss_pred             HHHHHHHHHHHHHHHHH-c-cCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHH-HHHHHHHh
Confidence            56789999999999974 4 5999999999999998887765544332211  012234555555555555 58899999


Q ss_pred             HhHhhcchhhHHHHhhhhHHHHHHHHHHHHH
Q 041218           82 YEGLYLASSTMGTAMGNLIPAITFVLAAIVG  112 (174)
Q Consensus        82 ~~gl~~t~a~~asil~~~~Pv~~~lla~~~~  112 (174)
                      .++.+...+-.+|+=.+..|++..+++.++.
T Consensus        90 iWAvn~g~~leaSLGY~InPL~~VllG~lfl  120 (293)
T COG2962          90 IWAVNNGHVLEASLGYFINPLVNVLLGRLFL  120 (293)
T ss_pred             heecCCCchhHHHhHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998763

>TIGR00688 rarD rarD protein

Probab=97.83  E-value=0.0006  Score=54.37  Aligned_cols=101  Identities=17%  Similarity=0.201  Sum_probs=67.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHH---hhhccCCCCc-chhHHHHHHHHHHHHHHHHH
Q 041218            3 MLGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYF---SRRKSRIPPL-GFKSFSLIFLTALIVITINQ   78 (174)
Q Consensus         3 l~~~~~~wg~~~v~~K~~l~~~~~p~~l~~~R~~ia~~~l~~~~~~---~~~~~~~~~~-~~~~~~~~~~lg~~g~~~~~   78 (174)
                      .+++.++|+.+.+..|..-++  ++....     .+...+.|+...   .......... ..++|..++.+|++ ....+
T Consensus       151 ~l~aa~~~a~~~i~~~~~~~~--~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~-t~i~~  222 (256)
T TIGR00688       151 ALVLAFSFTAYGLIRKALKNT--DLAGFC-----LETLSLMPVAIYYLLQTDFATVQQTNPFPIWLLLVLAGLI-TGTPL  222 (256)
T ss_pred             HHHHHHHHHHHHHHHhhcCCC--CcchHH-----HHHHHHHHHHHHHHHHhccCcccccCchhHHHHHHHHHHH-HHHHH
Confidence            356789999999999986432  322222     222222222211   1111110111 23588888888987 57899


Q ss_pred             HHHHhHhhcchhhHHHHhhhhHHHHHHHHHHHH
Q 041218           79 NMFYEGLYLASSTMGTAMGNLIPAITFVLAAIV  111 (174)
Q Consensus        79 ~~~~~gl~~t~a~~asil~~~~Pv~~~lla~~~  111 (174)
                      .+++.|+++.+|+.++.+.++.|++..+++.+.
T Consensus       223 ~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       223 LAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL  255 (256)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999988753

This uncharacterized protein is predicted to have many membrane-spanning domains.

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=97.75  E-value=0.0014  Score=54.37  Aligned_cols=142  Identities=14%  Similarity=0.118  Sum_probs=103.6

Q ss_pred             HHHHHHHh--CCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCc-chhHHHHHHHHHHHHHHHHHHHHHhHhhcchhh
Q 041218           15 VFTGAALL--QGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPL-GFKSFSLIFLTALIVITINQNMFYEGLYLASST   91 (174)
Q Consensus        15 v~~K~~l~--~~~~p~~l~~~R~~ia~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~lg~~g~~~~~~~~~~gl~~t~a~   91 (174)
                      +..|..++  +.--|..+...++..+.+.++..-..+..+ . ++. ++..+..++-+|++- ++...+-+.+++|.+.+
T Consensus        34 ~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~-~-~~~~~~~~~~~llpl~~~~-~~~~v~~n~Sl~~v~Vs  110 (316)
T KOG1441|consen   34 ILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVP-P-SKISSKLPLRTLLPLGLVF-CISHVLGNVSLSYVPVS  110 (316)
T ss_pred             EeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCC-C-CccccccchHHHHHHHHHH-HHHHHhcchhhhccchh
Confidence            34688877  434488999998888877666553332222 1 222 334566677777765 66677778999999999


Q ss_pred             HHHHhhhhHHHHHHHHHHHHH----------------------------------------HHHHhHHHHHHhhhcchhh
Q 041218           92 MGTAMGNLIPAITFVLAAIVG----------------------------------------SCCWSLWPILQVLKKSSNS  131 (174)
Q Consensus        92 ~asil~~~~Pv~~~lla~~~~----------------------------------------~~~~a~y~i~~~~~~~~~~  131 (174)
                      ..-.+=.++|.++.++++++.                                        .++.+...+++|      +
T Consensus       111 F~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~fn~~G~i~a~~s~~~~al~~I~~~------~  184 (316)
T KOG1441|consen  111 FYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELSFNLFGFISAMISNLAFALRNILSK------K  184 (316)
T ss_pred             HHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccccccHHHHHHHHHHHHHHHHHHHHHH------H
Confidence            999999999999999999864                                        556667778877      6


Q ss_pred             hhh--hcC-chhHHHHHHHHHHHHHHH-HHHHHhCCCC
Q 041218          132 LLK--TNC-VSVSLTVCMGFFATIQSA-IVTLFLEPDP  165 (174)
Q Consensus       132 ~~~--~~~-~~l~~t~~~~l~g~~~~~-~~~~~~~~~~  165 (174)
                      +.+  +++ |++.+..++.-++.+.++ |+....|++.
T Consensus       185 ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~  222 (316)
T KOG1441|consen  185 LLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNK  222 (316)
T ss_pred             hhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccc
Confidence            663  332 689999999999999998 9888877643

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=97.74  E-value=0.00015  Score=58.80  Aligned_cols=106  Identities=11%  Similarity=-0.079  Sum_probs=69.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCChH----HHHHHHHHHHHHHHHHHHHHhhhccCCCCcchhHHHHHHHHHHHHHHHHH
Q 041218            3 MLGLQCSYAGVAVFTGAALLQGMSPR----GSVVYRQAMATLIIAPIAYFSRRKSRIPPLGFKSFSLIFLTALIVITINQ   78 (174)
Q Consensus         3 l~~~~~~wg~~~v~~K~~l~~~~~p~----~l~~~R~~ia~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~   78 (174)
                      .+++.++|+.+.+..|...+ +.+|.    ....+.+.+.++.+.+....++++ . ...+.+++......+.++..+.+
T Consensus       149 ~l~aal~~a~~~i~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~s~l~~  225 (281)
T TIGR03340       149 ALAAALGTAIYSLSDKAAAL-GVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGR-S-MFPYARQILPSATLGGLMIGGAY  225 (281)
T ss_pred             HHHHHHHHHHhhhhcccccc-chhcccccHHHHHHHHHHHHHHHHHHHHHHhcc-c-hhhhHHHHHHHHHHHHHHHHHHH
Confidence            46678999999999997543 35543    233333333322222222111211 1 11122344566677778888899


Q ss_pred             HHHHhHhhcchhhHHHHhhhhHHHHHHHHHHHH
Q 041218           79 NMFYEGLYLASSTMGTAMGNLIPAITFVLAAIV  111 (174)
Q Consensus        79 ~~~~~gl~~t~a~~asil~~~~Pv~~~lla~~~  111 (174)
                      .+++.++++.+++.++.+.++.|++..++++++
T Consensus       226 ~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~  258 (281)
T TIGR03340       226 ALVLWAMTRLPVATVVALRNTSIVFAVVLGIWF  258 (281)
T ss_pred             HHHHHHHhhCCceEEEeecccHHHHHHHHHHHH
Confidence            999999999999999999999999999988753

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=97.56  E-value=0.0033  Score=52.78  Aligned_cols=109  Identities=11%  Similarity=0.130  Sum_probs=74.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHHHHHHHHHHhhhccCCC-------Ccc---hhHHHHH
Q 041218            3 MLGLQCSYAGVAVFTGAALLQ------GMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIP-------PLG---FKSFSLI   66 (174)
Q Consensus         3 l~~~~~~wg~~~v~~K~~l~~------~~~p~~l~~~R~~ia~~~l~~~~~~~~~~~~~~-------~~~---~~~~~~~   66 (174)
                      .+++.+.|+...+..|..+++      .+++..+..+-..+++++++|+....|......       ..+   .......
T Consensus       199 ~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~  278 (350)
T PTZ00343        199 AMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIFK  278 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHHH
Confidence            467889999999999998753      266777777778899999999876444211000       000   1111122


Q ss_pred             HHHHHHHHHHHHHHHHhHhhcchhhHHHHhhhhHHHHHHHHHHHH
Q 041218           67 FLTALIVITINQNMFYEGLYLASSTMGTAMGNLIPAITFVLAAIV  111 (174)
Q Consensus        67 ~~lg~~g~~~~~~~~~~gl~~t~a~~asil~~~~Pv~~~lla~~~  111 (174)
                      .+.+.+...+++.+.+.++++++|.++++..++-|+++.++++++
T Consensus       279 i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~  323 (350)
T PTZ00343        279 IFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIII  323 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHH
Confidence            233333445555555679999999999999999999999988854

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=97.52  E-value=0.02  Score=47.02  Aligned_cols=138  Identities=10%  Similarity=0.018  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHh-CCCC--hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcchhHHHHHHHHHHHHHHHHHHHHHhHhhcc
Q 041218           12 GVAVFTGAALL-QGMS--PRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGFKSFSLIFLTALIVITINQNMFYEGLYLA   88 (174)
Q Consensus        12 ~~~v~~K~~l~-~~~~--p~~l~~~R~~ia~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~~gl~~t   88 (174)
                      .+.+..+.... ++..  |..+.+..+....+.-.+.....+++    +.+++.+...+..+++- .+.+.+.+.+++|.
T Consensus        14 ~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~al~~i   88 (303)
T PF08449_consen   14 SYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFP----KSRKIPLKKYAILSFLF-FLASVLSNAALKYI   88 (303)
T ss_pred             HHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccc----CCCcChHHHHHHHHHHH-HHHHHHHHHHHHhC
Confidence            34455555443 2344  88999999988877666654332211    12233345566666654 66678888999999


Q ss_pred             hhhHHHHhhhhHHHHHHHHHHHHH--------------------------------------------------HHHHhH
Q 041218           89 SSTMGTAMGNLIPAITFVLAAIVG--------------------------------------------------SCCWSL  118 (174)
Q Consensus        89 ~a~~asil~~~~Pv~~~lla~~~~--------------------------------------------------~~~~a~  118 (174)
                      +-..-.++-+..|+.+++++.++.                                                  .++-|.
T Consensus        89 ~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~sl~~~a~  168 (303)
T PF08449_consen   89 SYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLLSLLLDAF  168 (303)
T ss_pred             ChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHHHHHHHHH
Confidence            999999999999999999997653                                                  556667


Q ss_pred             HHHHHhhhcchhhhhhhcC-chhHHHHHHHHHHHHHHHHHHHH
Q 041218          119 WPILQVLKKSSNSLLKTNC-VSVSLTVCMGFFATIQSAIVTLF  160 (174)
Q Consensus       119 y~i~~~~~~~~~~~~~~~~-~~l~~t~~~~l~g~~~~~~~~~~  160 (174)
                      ..+.|+      |..++|+ ++.....|+.+++.+...+....
T Consensus       169 ~~~~qe------~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~  205 (303)
T PF08449_consen  169 TGVYQE------KLFKKYGKSPWELMFYTNLFSLPFLLILLFL  205 (303)
T ss_pred             HHHHHH------HHHHHhCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            788888      8888886 57789999999999988777766

; GO: 0055085 transmembrane transport

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=97.49  E-value=0.0093  Score=48.72  Aligned_cols=105  Identities=15%  Similarity=0.122  Sum_probs=64.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHHHHHHHHhhhccCC-CCcchhHHHHHHHHHHHHHHHHHHH
Q 041218            3 MLGLQCSYAGVAVFTGAALLQG-MSPRGSVVYRQAMATLIIAPIAYFSRRKSRI-PPLGFKSFSLIFLTALIVITINQNM   80 (174)
Q Consensus         3 l~~~~~~wg~~~v~~K~~l~~~-~~p~~l~~~R~~ia~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~lg~~g~~~~~~~   80 (174)
                      .+++.++|+.+.+..|...++. .++.....+-..++...+.+..   ...... ...+...+..+...|+ .....+.+
T Consensus       154 ~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~-~t~i~~~~  229 (296)
T PRK15430        154 ALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIA---DSSTSHMGQNPMSLNLLLIAAGI-VTTVPLLC  229 (296)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHc---cCCcccccCCcHHHHHHHHHHHH-HHHHHHHH
Confidence            4567899999999999864321 2223333333344433322221   111000 0111222333444555 45688999


Q ss_pred             HHhHhhcchhhHHHHhhhhHHHHHHHHHHHH
Q 041218           81 FYEGLYLASSTMGTAMGNLIPAITFVLAAIV  111 (174)
Q Consensus        81 ~~~gl~~t~a~~asil~~~~Pv~~~lla~~~  111 (174)
                      ++.++++.+|+.++.+.++.|++..++++++
T Consensus       230 ~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~  260 (296)
T PRK15430        230 FTAAATRLRLSTLGFFQYIGPTLMFLLAVTF  260 (296)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999988754

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=97.46  E-value=0.0071  Score=44.09  Aligned_cols=108  Identities=17%  Similarity=0.212  Sum_probs=84.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCC---c-------chhHHHHH
Q 041218            3 MLGLQCSYAGVAVFTGAALLQ------GMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPP---L-------GFKSFSLI   66 (174)
Q Consensus         3 l~~~~~~wg~~~v~~K~~l~~------~~~p~~l~~~R~~ia~~~l~~~~~~~~~~~~~~~---~-------~~~~~~~~   66 (174)
                      .+.+.+.-+...+..|..+++      +.+|..+..+-...++++++|.....|+.+..+.   .       +.+.+..+
T Consensus         5 ~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (153)
T PF03151_consen    5 ALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNFIFLL   84 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHHHHHH
Confidence            456788999999999998865      7999999999999999999998877665431000   0       12334444


Q ss_pred             HHHHHHHHHHHHHHHHhHhhcchhhHHHHhhhhHHHHHHHHHHHH
Q 041218           67 FLTALIVITINQNMFYEGLYLASSTMGTAMGNLIPAITFVLAAIV  111 (174)
Q Consensus        67 ~~lg~~g~~~~~~~~~~gl~~t~a~~asil~~~~Pv~~~lla~~~  111 (174)
                      ...|+++ ..++...+.-+++++|...++..+.-.+.+.++++++
T Consensus        85 ~~~~~~~-~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~  128 (153)
T PF03151_consen   85 ILSGLLA-FLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIF  128 (153)
T ss_pred             HHHHHHH-HHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhh
Confidence            5556665 7888899999999999999999999999988887754

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=97.33  E-value=0.011  Score=47.00  Aligned_cols=102  Identities=14%  Similarity=0.225  Sum_probs=74.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCChHHHHH-HHHHHHHHHHHHHHHHhhhccCCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 041218            3 MLGLQCSYAGVAVFTGAALLQGMSPRGSVV-YRQAMATLIIAPIAYFSRRKSRIPPLGFKSFSLIFLTALIVITINQNMF   81 (174)
Q Consensus         3 l~~~~~~wg~~~v~~K~~l~~~~~p~~l~~-~R~~ia~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~~~   81 (174)
                      .+++.+.|+.+.+..|... + .++..... +.+..+.....+.  ..+...  .+.+.+++......|+++....+.++
T Consensus       159 ~l~a~~~~a~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~g~~~~~i~~~~~  232 (292)
T COG0697         159 ALAAALLWALYTALVKRLS-R-LGPVTLALLLQLLLALLLLLLF--FLSGFG--APILSRAWLLLLYLGVFSTGLAYLLW  232 (292)
T ss_pred             HHHHHHHHHHHHHHHHHhc-C-CChHHHHHHHHHHHHHHHHHHH--Hhcccc--ccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678899999999999866 3 77777776 4444222222222  212111  13456788889999999988899999


Q ss_pred             HhHhhcchhhHHHHhhhhHHHHHHHHHHH
Q 041218           82 YEGLYLASSTMGTAMGNLIPAITFVLAAI  110 (174)
Q Consensus        82 ~~gl~~t~a~~asil~~~~Pv~~~lla~~  110 (174)
                      +.++++.+++.++.+..+.|++..+++++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~l  261 (292)
T COG0697         233 YYALRLLGASLVALLSLLEPVFAALLGVL  261 (292)
T ss_pred             HHHHHhcCchHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999876553

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=97.22  E-value=0.00023  Score=57.53  Aligned_cols=99  Identities=15%  Similarity=0.174  Sum_probs=65.6

Q ss_pred             HHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcchhHHHHH-HHHHHHHHHHHHHHHHhHh
Q 041218            7 QCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGFKSFSLI-FLTALIVITINQNMFYEGL   85 (174)
Q Consensus         7 ~~~wg~~~v~~K~~l~~~~~p~~l~~~R~~ia~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~lg~~g~~~~~~~~~~gl   85 (174)
                      ...+....++.+..+ + .+|.+...-|+..-.++-.|-..+++..-..|+ ..|.|..+ -.+|..|    ....|+++
T Consensus        46 s~ff~~~~vv~t~~~-e-~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~-g~R~~LiLRg~mG~tg----vmlmyya~  118 (346)
T KOG4510|consen   46 SYFFNSCMVVSTKVL-E-NDPMELASFRLLVRMLITYPCLIYYMQPVIGPE-GKRKWLILRGFMGFTG----VMLMYYAL  118 (346)
T ss_pred             HHHHhhHHHhhhhhh-c-cChhHhhhhhhhhehhhhheEEEEEeeeeecCC-CcEEEEEeehhhhhhH----HHHHHHHH
Confidence            356666677777665 3 899999999977766665554333222111122 22222111 2455555    33456899


Q ss_pred             hcchhhHHHHhhhhHHHHHHHHHHHHH
Q 041218           86 YLASSTMGTAMGNLIPAITFVLAAIVG  112 (174)
Q Consensus        86 ~~t~a~~asil~~~~Pv~~~lla~~~~  112 (174)
                      +|-+-+.|+++....|++|.++|+.++
T Consensus       119 ~~mslaDA~vItFssPvft~ifaw~~L  145 (346)
T KOG4510|consen  119 MYMSLADAVVITFSSPVFTIIFAWAFL  145 (346)
T ss_pred             hhcchhheEEEEecChHHHHHHHHHHH
Confidence            999999999999999999999999875

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=96.64  E-value=0.041  Score=44.99  Aligned_cols=97  Identities=13%  Similarity=0.061  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCChHHH---HHHHHHHHHHHHHHHHHHhhhccCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 041218            4 LGLQCSYAGVAVFTGAALLQGMSPRGS---VVYRQAMATLIIAPIAYFSRRKSRIPPLGFKSFSLIFLTALIVITINQNM   80 (174)
Q Consensus         4 ~~~~~~wg~~~v~~K~~l~~~~~p~~l---~~~R~~ia~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~~   80 (174)
                      +++.+.++.+.+..|..   +.||.+.   ..+-..+++.++.+..  + + .+ +. +.+......+.|++ ....+.+
T Consensus       158 l~sg~~y~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~--~-~-~~-~~-~~~~~~~~~~~Gi~-~~ia~~~  227 (290)
T TIGR00776       158 LMSTIGYLVYVVVAKAF---GVDGLSVLLPQAIGMVIGGIIFNLGH--I-L-AK-PL-KKYAILLNILPGLM-WGIGNFF  227 (290)
T ss_pred             HHHHHHHHHHHHHHHHc---CCCcceehhHHHHHHHHHHHHHHHHH--h-c-cc-ch-HHHHHHHHHHHHHH-HHHHHHH
Confidence            56788999999999964   3889988   4444455555544432  1 1 12 22 23344445558888 5888889


Q ss_pred             HHhHhh-cchhhHHHHhhhhHHHHHHHHHHH
Q 041218           81 FYEGLY-LASSTMGTAMGNLIPAITFVLAAI  110 (174)
Q Consensus        81 ~~~gl~-~t~a~~asil~~~~Pv~~~lla~~  110 (174)
                      |+.|.+ +..++.++++.+..|+...+.+++
T Consensus       228 y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~  258 (290)
T TIGR00776       228 YLFSAQPKVGVATSFSLSQLGVIISTLGGIL  258 (290)
T ss_pred             HHHHcccccchhhHHHHHHHHHHHHHHHHHH
Confidence            999999 999999999999999999987764

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=96.49  E-value=0.042  Score=44.26  Aligned_cols=105  Identities=17%  Similarity=0.094  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcchhHHHHHHHHHHHHHHHHHHHHHh
Q 041218            4 LGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGFKSFSLIFLTALIVITINQNMFYE   83 (174)
Q Consensus         4 ~~~~~~wg~~~v~~K~~l~~~~~p~~l~~~R~~ia~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~~   83 (174)
                      ..+..+|+.+.+.+|.+-+ ..+--.=+..-+.+|+++.+|+..-+...   .-.+++-+..-+..|+++..+.+.+...
T Consensus       154 l~AG~~Wa~YIv~G~r~g~-~~~g~~g~a~gm~vAaviv~Pig~~~ag~---~l~~p~ll~laLgvavlSSalPYsLEmi  229 (292)
T COG5006         154 LGAGACWALYIVLGQRAGR-AEHGTAGVAVGMLVAALIVLPIGAAQAGP---ALFSPSLLPLALGVAVLSSALPYSLEMI  229 (292)
T ss_pred             HHHhHHHHHHHHHcchhcc-cCCCchHHHHHHHHHHHHHhhhhhhhcch---hhcChHHHHHHHHHHHHhcccchHHHHH
Confidence            4577999999999999764 36666778889999999999997643321   1234555555567899999999999999


Q ss_pred             HhhcchhhHHHHhhhhHHHHHHHHHHHHH
Q 041218           84 GLYLASSTMGTAMGNLIPAITFVLAAIVG  112 (174)
Q Consensus        84 gl~~t~a~~asil~~~~Pv~~~lla~~~~  112 (174)
                      +++..++..-++++++.|.+..+.++++.
T Consensus       230 AL~rlp~~~F~~LlSLePa~aAl~G~i~L  258 (292)
T COG5006         230 ALRRLPARTFGTLLSLEPALAALSGLIFL  258 (292)
T ss_pred             HHhhCChhHHHHHHHhhHHHHHHHHHHHh
Confidence            99999999999999999999998877653

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=96.00  E-value=0.09  Score=44.55  Aligned_cols=80  Identities=14%  Similarity=0.098  Sum_probs=61.5

Q ss_pred             HHHHHHHHhHhhcchhhHHHHhhhhHHHHHHHHHHHHH------------------------------------------
Q 041218           75 TINQNMFYEGLYLASSTMGTAMGNLIPAITFVLAAIVG------------------------------------------  112 (174)
Q Consensus        75 ~~~~~~~~~gl~~t~a~~asil~~~~Pv~~~lla~~~~------------------------------------------  112 (174)
                      .+.++.++.++.||+++..+++.++.-+||..+|.++.                                          
T Consensus       170 F~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~a~~~llG~  249 (416)
T KOG2765|consen  170 FLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLPASRPLLGN  249 (416)
T ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCCccchhHHH
Confidence            56678888999999999999999999999999988774                                          


Q ss_pred             ------HHHHhHHHHHHhhhcchhhhhhhcC---chhHHHHHHHHHHHHHHHHHHHH
Q 041218          113 ------SCCWSLWPILQVLKKSSNSLLKTNC---VSVSLTVCMGFFATIQSAIVTLF  160 (174)
Q Consensus       113 ------~~~~a~y~i~~~~~~~~~~~~~~~~---~~l~~t~~~~l~g~~~~~~~~~~  160 (174)
                            ++.||.|+++.|      |...+.+   |--.+-.+.-++.-+.+.|..++
T Consensus       250 llaL~sA~~YavY~vllk------~~~~~eg~rvdi~lffGfvGLfnllllwP~l~i  300 (416)
T KOG2765|consen  250 LLALLSALLYAVYTVLLK------RKIGDEGERVDIQLFFGFVGLFNLLLLWPPLII  300 (416)
T ss_pred             HHHHHHHHHHHHHHHHHH------hhcccccccccHHHHHHHHHHHHHHHHhHHHHH
Confidence                  999999999998      6665552   32234455556666666665544

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=95.98  E-value=0.61  Score=38.40  Aligned_cols=138  Identities=13%  Similarity=0.092  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHh---CCCC----hHHHHHHHHHHHHHHHHHHHHHhhhccCC--------------CCcchhHHHHHHHH
Q 041218           11 AGVAVFTGAALL---QGMS----PRGSVVYRQAMATLIIAPIAYFSRRKSRI--------------PPLGFKSFSLIFLT   69 (174)
Q Consensus        11 g~~~v~~K~~l~---~~~~----p~~l~~~R~~ia~~~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~~l   69 (174)
                      +.|.+.+|++-+   +|-|    |+..+..-|+--++++..+.+++.|.+.+              ++.+++....=.++
T Consensus        16 s~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p~lfl~Pal~   95 (372)
T KOG3912|consen   16 SFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNPVLFLPPALC   95 (372)
T ss_pred             cHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCcceecChHHH
Confidence            456778888653   3333    55555555555567777766665443221              12222222222344


Q ss_pred             HHHHHHHHHHHHHhHhhcchhhHHHHhhhhHHHHHHHHHHHHH-------------------------------------
Q 041218           70 ALIVITINQNMFYEGLYLASSTMGTAMGNLIPAITFVLAAIVG-------------------------------------  112 (174)
Q Consensus        70 g~~g~~~~~~~~~~gl~~t~a~~asil~~~~Pv~~~lla~~~~-------------------------------------  112 (174)
                      -..|    ..+.|.|+.+|+|+.--.+-...-+|+.+++..++                                     
T Consensus        96 Di~g----sslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~p~~d~  171 (372)
T KOG3912|consen   96 DIAG----SSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTDPYTDY  171 (372)
T ss_pred             HHhh----hHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccCCcccc
Confidence            4555    55567999999999877777788888888887543                                     


Q ss_pred             -------------HHHHhHHHHHHhhhcchhhhhhhcC-chhHHHHHHHHHHHHHHHHHH
Q 041218          113 -------------SCCWSLWPILQVLKKSSNSLLKTNC-VSVSLTVCMGFFATIQSAIVT  158 (174)
Q Consensus       113 -------------~~~~a~y~i~~~~~~~~~~~~~~~~-~~l~~t~~~~l~g~~~~~~~~  158 (174)
                                   .+.-|.-.+.-.      |..++++ +|+...+|+-++|-+.+...+
T Consensus       172 s~iitGdllIiiaqiivaiQ~v~Ee------k~l~~~nV~pl~avg~eGlfG~v~~slL~  225 (372)
T KOG3912|consen  172 SSIITGDLLIIIAQIIVAIQMVCEE------KQLKKSNVAPLQAVGWEGLFGLVILSLLA  225 (372)
T ss_pred             ccchhhhHHHHHHHHHHHHHHHHHH------hhhhhccCCHHHHhhhhhhHHHHHHHHHH
Confidence                         334444455544      6677765 699999999999955443333

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=94.96  E-value=0.26  Score=41.37  Aligned_cols=106  Identities=8%  Similarity=-0.044  Sum_probs=71.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcc--hhHHHHHHHHHHHHHHHHHH
Q 041218            2 AMLGLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLG--FKSFSLIFLTALIVITINQN   79 (174)
Q Consensus         2 ~l~~~~~~wg~~~v~~K~~l~~~~~p~~l~~~R~~ia~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~lg~~g~~~~~~   79 (174)
                      .++++++++|.+.+.-|....+ .|+.++...=-+++.++..+.....|++.. .+.+  .+... .++...++....+.
T Consensus       172 l~l~~a~lya~~nV~~E~~v~~-~~~~~~lg~~Glfg~ii~~iq~~ile~~~i-~~~~w~~~~~~-~~v~~~~~lf~~y~  248 (334)
T PF06027_consen  172 LALLGAILYAVSNVLEEKLVKK-APRVEFLGMLGLFGFIISGIQLAILERSGI-ESIHWTSQVIG-LLVGYALCLFLFYS  248 (334)
T ss_pred             HHHHHHHHHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHHHHHHheehhhh-hccCCChhhHH-HHHHHHHHHHHHHH
Confidence            3577899999999999998764 888888877777888877776666676544 3332  23222 22223344455666


Q ss_pred             HHHhHhhcchhhHHHHhhhhHHHHHHHHHHH
Q 041218           80 MFYEGLYLASSTMGTAMGNLIPAITFVLAAI  110 (174)
Q Consensus        80 ~~~~gl~~t~a~~asil~~~~Pv~~~lla~~  110 (174)
                      +.-..+++++|+...+=.-+...+..++..+
T Consensus       249 l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~  279 (334)
T PF06027_consen  249 LVPIVLRMSSATFFNLSLLTSDFYALIIDIF  279 (334)
T ss_pred             HHHHHHHhCccceeehHHHHhhHHHHHHHHH
Confidence            6678889999886665455566666665553

Some of the sequences in this family are annotated as putative membrane proteins.

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=94.64  E-value=1.4  Score=35.30  Aligned_cols=53  Identities=13%  Similarity=0.118  Sum_probs=45.1

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhHhhcchhhHHHHhhhhHHHHHHHHHHHHH
Q 041218           59 GFKSFSLIFLTALIVITINQNMFYEGLYLASSTMGTAMGNLIPAITFVLAAIVG  112 (174)
Q Consensus        59 ~~~~~~~~~~lg~~g~~~~~~~~~~gl~~t~a~~asil~~~~Pv~~~lla~~~~  112 (174)
                      ++||..+..+=+++ .++++.+.+.++++.+|+.--++..+-.++|++++++++
T Consensus        13 ~~~~~~~~~vPA~l-Y~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L   65 (244)
T PF04142_consen   13 SPKDTLKLAVPALL-YAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLL   65 (244)
T ss_pred             hHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHH
Confidence            35676666666666 799999999999999999999999999999999998754

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=94.40  E-value=0.44  Score=39.49  Aligned_cols=55  Identities=13%  Similarity=0.081  Sum_probs=43.2

Q ss_pred             CcchhHHHHH-HHHHHHHHHHHHHHHHhHhhcchhhHHHHhhhhHHHHHHHHHHHHH
Q 041218           57 PLGFKSFSLI-FLTALIVITINQNMFYEGLYLASSTMGTAMGNLIPAITFVLAAIVG  112 (174)
Q Consensus        57 ~~~~~~~~~~-~~lg~~g~~~~~~~~~~gl~~t~a~~asil~~~~Pv~~~lla~~~~  112 (174)
                      +.++++..+- .-.|+. .++.-++-+++++|++-+.=+..=+..++|+.+++.+++
T Consensus        77 ~~sw~~~Lr~~aPtala-ta~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~  132 (349)
T KOG1443|consen   77 VLSWRDYLRRLAPTALA-TALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFK  132 (349)
T ss_pred             CCcHHHHHHHhhhhhhh-hhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHH
Confidence            3456655433 345555 488999999999999999888888999999999998876

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=94.24  E-value=1.1  Score=31.46  Aligned_cols=44  Identities=14%  Similarity=-0.017  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHHHHhHhhcchhhHHHHhhhhHHHHHHHHHHHH
Q 041218           68 LTALIVITINQNMFYEGLYLASSTMGTAMGNLIPAITFVLAAIV  111 (174)
Q Consensus        68 ~lg~~g~~~~~~~~~~gl~~t~a~~asil~~~~Pv~~~lla~~~  111 (174)
                      ..++++..+.+.++..++++.+.+.|-.+.++.|+++.++++++
T Consensus        41 ~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~   84 (111)
T PRK15051         41 GLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKL   84 (111)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHH
Confidence            44558888899999999999999999998889999999988753

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=94.05  E-value=0.085  Score=36.37  Aligned_cols=43  Identities=26%  Similarity=0.415  Sum_probs=36.3

Q ss_pred             HHHhHHHHHHhhhcchhhhhhhcCchhHHHHHHHHHHHHHHHHHHHHhCCC
Q 041218          114 CCWSLWPILQVLKKSSNSLLKTNCVSVSLTVCMGFFATIQSAIVTLFLEPD  164 (174)
Q Consensus       114 ~~~a~y~i~~~~~~~~~~~~~~~~~~l~~t~~~~l~g~~~~~~~~~~~~~~  164 (174)
                      ++||.+.+..|      +..++.| +...+.+.+..+++ .++...+.+++
T Consensus         1 ~~~a~~~~~~k------~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~   43 (126)
T PF00892_consen    1 FSWAIYSVFSK------KLLKKIS-PLSITFWRFLIAGI-LLILLLILGRK   43 (126)
T ss_pred             ceeeeHHHHHH------HHhccCC-HHHHHHHHHHHHHH-HHHHHHhhccc
Confidence            57999999999      8999984 99999999999998 77777666543

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.36  E-value=5.1  Score=33.32  Aligned_cols=104  Identities=14%  Similarity=0.071  Sum_probs=64.0

Q ss_pred             HHHHHHHHH----HHHHHHHHhC-CCChHHHH--HHHHHHHHHHHHHHHHHhhhccCCCCcchhHHHHHHHHHHHHHHHH
Q 041218            5 GLQCSYAGV----AVFTGAALLQ-GMSPRGSV--VYRQAMATLIIAPIAYFSRRKSRIPPLGFKSFSLIFLTALIVITIN   77 (174)
Q Consensus         5 ~~~~~wg~~----~v~~K~~l~~-~~~p~~l~--~~R~~ia~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~   77 (174)
                      ++.+.++.+    .++-|.++.. ++| ..+.  .++.+...+++...-.  -|-.+.++.++++.+..+-..++- ...
T Consensus        15 ~sa~~Y~~sS~lm~vvNK~vls~y~f~-~~l~l~~~Q~l~s~~~v~~lk~--~~lv~~~~l~~~~~kk~~P~~~lf-~~~   90 (314)
T KOG1444|consen   15 LSALFYCLSSILMTVVNKIVLSSYNFP-MGLLLMLLQSLASVLVVLVLKR--LGLVNFRPLDLRTAKKWFPVSLLF-VGM   90 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHHHHHHHHHH--hceeecCCcChHHHHHHccHHHHH-HHH
Confidence            344455544    4556877764 343 3333  3777776655544321  121112455565555555555543 444


Q ss_pred             HHHHHhHhhcchhhHHHHhhhhHHHHHHHHHHHHH
Q 041218           78 QNMFYEGLYLASSTMGTAMGNLIPAITFVLAAIVG  112 (174)
Q Consensus        78 ~~~~~~gl~~t~a~~asil~~~~Pv~~~lla~~~~  112 (174)
                      ...-..++||.+...-+++=+..|+++++....++
T Consensus        91 i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~  125 (314)
T KOG1444|consen   91 LFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFF  125 (314)
T ss_pred             HHHccccccccCchHHHHHhhchHHHHHHhHHhhc
Confidence            44556899999999999999999999999887654

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=89.91  E-value=1.7  Score=35.41  Aligned_cols=127  Identities=20%  Similarity=0.265  Sum_probs=85.3

Q ss_pred             CCCC-hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcchhHHHHHHHHHHHHHHHHHHHHHhHhhcchhhHHHHhhhhHH
Q 041218           23 QGMS-PRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGFKSFSLIFLTALIVITINQNMFYEGLYLASSTMGTAMGNLIP  101 (174)
Q Consensus        23 ~~~~-p~~l~~~R~~ia~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~~gl~~t~a~~asil~~~~P  101 (174)
                      .|++ |..=.++-...=+++--|+..+|. + . -+   ..|-+.+++|+.-+-. +++...+-|||+-+...++-.-.-
T Consensus        43 k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~-~-~-~~---~~~~hYilla~~DVEa-Ny~vV~AyQyTsmtSi~lLDcwai  115 (336)
T KOG2766|consen   43 KGINAPTSQTFLNYVLLALVYGPIMLFRR-K-Y-IK---AKWRHYILLAFVDVEA-NYFVVKAYQYTSMTSIMLLDCWAI  115 (336)
T ss_pred             ccCCCccHHHHHHHHHHHHHHhhHHHhhh-H-H-HH---HHHHHhhheeEEeecc-cEEEeeehhhcchHHHHHHHHhhh
Confidence            3344 444455555555555566555433 1 1 12   2344577888876444 344568899999988888877555


Q ss_pred             HHHHHHHHHHH------------------------------------------------HHHHhHHHHHHhhhcchhhhh
Q 041218          102 AITFVLAAIVG------------------------------------------------SCCWSLWPILQVLKKSSNSLL  133 (174)
Q Consensus       102 v~~~lla~~~~------------------------------------------------~~~~a~y~i~~~~~~~~~~~~  133 (174)
                      ..+.+++++++                                                +-+||.-++...      -+.
T Consensus       116 p~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lvi~GATlYaVSNv~EE------flv  189 (336)
T KOG2766|consen  116 PCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLVIAGATLYAVSNVSEE------FLV  189 (336)
T ss_pred             HHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEEEecceeeeeccccHH------HHH
Confidence            56666787764                                                778888888888      778


Q ss_pred             hhcCchhHHHHHHHHHHHHHHHHHHHHhCCC
Q 041218          134 KTNCVSVSLTVCMGFFATIQSAIVTLFLEPD  164 (174)
Q Consensus       134 ~~~~~~l~~t~~~~l~g~~~~~~~~~~~~~~  164 (174)
                      |+-+ ...+...--++|++.+.+= ++.|++
T Consensus       190 kn~d-~~elm~~lgLfGaIIsaIQ-~i~~~~  218 (336)
T KOG2766|consen  190 KNAD-RVELMGFLGLFGAIISAIQ-FIFERH  218 (336)
T ss_pred             hcCc-HHHHHHHHHHHHHHHHHHH-Hhhhcc
Confidence            8874 7889999999999998654 666654

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=89.59  E-value=10  Score=30.95  Aligned_cols=108  Identities=14%  Similarity=0.109  Sum_probs=75.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHHHHHHHHH--hhhccCCCC---cchhHHHHHHHHHHHHHHH
Q 041218            3 MLGLQCSYAGVAVFTGAALL-QGMSPRGSVVYRQAMATLIIAPIAYF--SRRKSRIPP---LGFKSFSLIFLTALIVITI   76 (174)
Q Consensus         3 l~~~~~~wg~~~v~~K~~l~-~~~~p~~l~~~R~~ia~~~l~~~~~~--~~~~~~~~~---~~~~~~~~~~~lg~~g~~~   76 (174)
                      ++++.++-|...+..+..++ ++.+|.+..++-..++.+..++....  .+......+   ..+..+..++...+.+. .
T Consensus       159 l~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~~~-~  237 (303)
T PF08449_consen  159 LLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLTGA-L  237 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHHHH-H
Confidence            55666788888888888774 57999999999999998888776655  111100001   11234455566666664 4


Q ss_pred             HHHHHHhHhhcchhhHHHHhhhhHHHHHHHHHHHH
Q 041218           77 NQNMFYEGLYLASSTMGTAMGNLIPAITFVLAAIV  111 (174)
Q Consensus        77 ~~~~~~~gl~~t~a~~asil~~~~Pv~~~lla~~~  111 (174)
                      .|.+.+.-.+..+|...+++..+--+++.+++.++
T Consensus       238 g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~  272 (303)
T PF08449_consen  238 GQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVII  272 (303)
T ss_pred             HHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHh
Confidence            44455566899999999999999999999888753

; GO: 0055085 transmembrane transport

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=88.93  E-value=0.5  Score=38.64  Aligned_cols=102  Identities=14%  Similarity=-0.055  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcchhHHHHHHHHHHHHHHHHHHHHHhHh
Q 041218            6 LQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSRIPPLGFKSFSLIFLTALIVITINQNMFYEGL   85 (174)
Q Consensus         6 ~~~~wg~~~v~~K~~l~~~~~p~~l~~~R~~ia~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~~gl   85 (174)
                      .++.-+..+++.|+.-+ ..+-..-+.+=..++.+.-+..+.....-+  -+..+|||+.+..+|++| .+.|.+...|+
T Consensus       199 s~lf~asvyIilR~iGk-~~h~~msvsyf~~i~lV~s~I~~~~ig~~~--lP~cgkdr~l~~~lGvfg-figQIllTm~l  274 (346)
T KOG4510|consen  199 SVLFGASVYIILRYIGK-NAHAIMSVSYFSLITLVVSLIGCASIGAVQ--LPHCGKDRWLFVNLGVFG-FIGQILLTMGL  274 (346)
T ss_pred             hHhhhhhHHHHHHHhhc-cccEEEEehHHHHHHHHHHHHHHhhcccee--cCccccceEEEEEehhhh-hHHHHHHHHHh
Confidence            33444555666665422 244443333333444333222221112222  245678888888999998 89999999999


Q ss_pred             hcchhhHHHHhhhhHHHHHHHHHHHH
Q 041218           86 YLASSTMGTAMGNLIPAITFVLAAIV  111 (174)
Q Consensus        86 ~~t~a~~asil~~~~Pv~~~lla~~~  111 (174)
                      |.--|+-.+++.++--++.++--.++
T Consensus       275 QiErAGpvaim~~~dvvfAf~wqv~f  300 (346)
T KOG4510|consen  275 QIERAGPVAIMTYTDVVFAFFWQVLF  300 (346)
T ss_pred             hhhccCCeehhhHHHHHHHHHHHHHH
Confidence            99999999999999998888765544

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=86.76  E-value=4.1  Score=29.38  Aligned_cols=44  Identities=14%  Similarity=0.119  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHHHHHHhHhhcchhhHHHHhhhhHHHHHHHHHH
Q 041218           66 IFLTALIVITINQNMFYEGLYLASSTMGTAMGNLIPAITFVLAA  109 (174)
Q Consensus        66 ~~~lg~~g~~~~~~~~~~gl~~t~a~~asil~~~~Pv~~~lla~  109 (174)
                      ...+|+.+..+.+.++..++++.+++.|.-+.+..|+++.+.++
T Consensus        50 ~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~   93 (129)
T PRK02971         50 AVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAM   93 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHH
Confidence            56789999999999999999999999999777777777766554

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=85.25  E-value=20  Score=29.60  Aligned_cols=104  Identities=11%  Similarity=0.130  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccC-CCCcchhHHHHHHHHHHHHHHHHHHHHHh
Q 041218            5 GLQCSYAGVAVFTGAALLQGMSPRGSVVYRQAMATLIIAPIAYFSRRKSR-IPPLGFKSFSLIFLTALIVITINQNMFYE   83 (174)
Q Consensus         5 ~~~~~wg~~~v~~K~~l~~~~~p~~l~~~R~~ia~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~lg~~g~~~~~~~~~~   83 (174)
                      ...+.||.++..=|..   ++|+.+=.+.-...-...-+.+.+..+.... ...-+.+++..+...|... +..-.++..
T Consensus       155 ~la~sf~~Ygl~RK~~---~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vT-avpL~lf~~  230 (293)
T COG2962         155 ALALSFGLYGLLRKKL---KVDALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGLVT-AVPLLLFAA  230 (293)
T ss_pred             HHHHHHHHHHHHHHhc---CCchHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhHHH-HHHHHHHHH
Confidence            3456778877776653   4777766665555544433333333222110 0112346677777888885 889999999


Q ss_pred             HhhcchhhHHHHhhhhHHHHHHHHHHHHH
Q 041218           84 GLYLASSTMGTAMGNLIPAITFVLAAIVG  112 (174)
Q Consensus        84 gl~~t~a~~asil~~~~Pv~~~lla~~~~  112 (174)
                      |-+..+=+.-+++++..|.+.+++|.++.
T Consensus       231 aa~~lpls~~G~lqYi~Ptl~fllav~i~  259 (293)
T COG2962         231 AAKRLPLSTLGFLQYIEPTLMFLLAVLIF  259 (293)
T ss_pred             HHhcCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence            99999999999999999999999998654

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=83.13  E-value=9.7  Score=29.96  Aligned_cols=38  Identities=26%  Similarity=0.203  Sum_probs=33.6

Q ss_pred             HHHHHHHHhHhhcchhhHHHHhhhhHHHHHHHHHHHHH
Q 041218           75 TINQNMFYEGLYLASSTMGTAMGNLIPAITFVLAAIVG  112 (174)
Q Consensus        75 ~~~~~~~~~gl~~t~a~~asil~~~~Pv~~~lla~~~~  112 (174)
                      +..++.|..+++..+|+.++-+....-.|+.+++++..
T Consensus        64 t~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL  101 (290)
T KOG4314|consen   64 TGANYLYLLALKKISASDASAIFACNAAFVFILAIIVL  101 (290)
T ss_pred             ecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHh
Confidence            34577888999999999999999999999999998764

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=82.12  E-value=4.7  Score=28.94  Aligned_cols=47  Identities=21%  Similarity=0.104  Sum_probs=38.9

Q ss_pred             HHHHhHHHHHHhhhcchhhhhhhc------CchhHHHHHHHHHHHHHHHHHHHHhCCCC
Q 041218          113 SCCWSLWPILQVLKKSSNSLLKTN------CVSVSLTVCMGFFATIQSAIVTLFLEPDP  165 (174)
Q Consensus       113 ~~~~a~y~i~~~~~~~~~~~~~~~------~~~l~~t~~~~l~g~~~~~~~~~~~~~~~  165 (174)
                      .++.+++.++.|      +..++.      .++..+..+....+.+.+.|...+.|++.
T Consensus         9 ~~~~al~~v~~~------~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~   61 (153)
T PF03151_consen    9 SLFSALRNVLIK------KLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQ   61 (153)
T ss_pred             HHHHHHHHHHHH------HHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            678899999988      666552      27899999999999999999999887653

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=80.29  E-value=35  Score=28.87  Aligned_cols=110  Identities=14%  Similarity=0.179  Sum_probs=77.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHHHHHHHHHHhhhc---cCCCCc------chhHHHHHHHH
Q 041218            2 AMLGLQCSYAGVAVFTGAALLQG---MSPRGSVVYRQAMATLIIAPIAYFSRRK---SRIPPL------GFKSFSLIFLT   69 (174)
Q Consensus         2 ~l~~~~~~wg~~~v~~K~~l~~~---~~p~~l~~~R~~ia~~~l~~~~~~~~~~---~~~~~~------~~~~~~~~~~l   69 (174)
                      .|++.++-+++..+..|++-..+   +.|-+.++.--.+-.++.....+..+|+   +..+..      +++|..++.+=
T Consensus        19 ~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~~vP   98 (345)
T KOG2234|consen   19 SLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKVSVP   98 (345)
T ss_pred             HHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHHHHH
Confidence            46777888999999999987655   7788888888877766666555554322   111111      23344454444


Q ss_pred             HHHHHHHHHHHHHhHhhcchhhHHHHhhhhHHHHHHHHHHHHH
Q 041218           70 ALIVITINQNMFYEGLYLASSTMGTAMGNLIPAITFVLAAIVG  112 (174)
Q Consensus        70 g~~g~~~~~~~~~~gl~~t~a~~asil~~~~Pv~~~lla~~~~  112 (174)
                      +++ +++++.++|.++.+.+|+.-.+..++--..|++++.+++
T Consensus        99 a~i-YalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L  140 (345)
T KOG2234|consen   99 ALI-YALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLIL  140 (345)
T ss_pred             HHH-HHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHH
Confidence            444 688888999999999999999988887777888777653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	174
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	93.88
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	91.34

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=93.88  E-value=0.11  Score=36.89  Aligned_cols=45  Identities=9%  Similarity=0.006  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHHHhHhhcchhhHHHHh-hhhHHHHHHHHHHHHH
Q 041218           68 LTALIVITINQNMFYEGLYLASSTMGTAM-GNLIPAITFVLAAIVG  112 (174)
Q Consensus        68 ~lg~~g~~~~~~~~~~gl~~t~a~~asil-~~~~Pv~~~lla~~~~  112 (174)
                      ++|+++..+.+.++..++++.+++.+..+ .++.|+++.++++++.
T Consensus        34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~l   79 (137)
T 2i68_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFF   79 (137)
T ss_dssp             CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHh
Confidence            67888899999999999999999999887 8999999999988653

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=91.34  E-value=0.68  Score=31.29  Aligned_cols=44  Identities=9%  Similarity=0.046  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHHHHhHhhcchhhHHHHh-hhhHHHHHHHHHHHH
Q 041218           68 LTALIVITINQNMFYEGLYLASSTMGTAM-GNLIPAITFVLAAIV  111 (174)
Q Consensus        68 ~lg~~g~~~~~~~~~~gl~~t~a~~asil-~~~~Pv~~~lla~~~  111 (174)
                      +.++++....+.++..++++.+.+.+..+ ..+.|+++.++++++
T Consensus        34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~   78 (110)
T 3b5d_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGF   78 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHH
Confidence            57788888899999999999999999777 799999999988743

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00