Citrus Sinensis ID: 041227
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1468 | ||||||
| 359486850 | 1395 | PREDICTED: uncharacterized protein LOC10 | 0.309 | 0.325 | 0.677 | 0.0 | |
| 255586967 | 1362 | DNA repair protein RAD50, putative [Rici | 0.403 | 0.435 | 0.592 | 0.0 | |
| 296085937 | 1338 | unnamed protein product [Vitis vinifera] | 0.399 | 0.437 | 0.581 | 0.0 | |
| 147861524 | 2427 | hypothetical protein VITISV_009664 [Viti | 0.497 | 0.301 | 0.506 | 0.0 | |
| 359481940 | 2411 | PREDICTED: uncharacterized protein LOC10 | 0.497 | 0.303 | 0.506 | 0.0 | |
| 255556780 | 1306 | ATSMC2, putative [Ricinus communis] gi|2 | 0.393 | 0.441 | 0.489 | 1e-126 | |
| 224068875 | 1228 | predicted protein [Populus trichocarpa] | 0.399 | 0.477 | 0.475 | 1e-125 | |
| 356533879 | 1286 | PREDICTED: uncharacterized protein LOC10 | 0.497 | 0.568 | 0.395 | 1e-120 | |
| 125542071 | 1363 | hypothetical protein OsI_09659 [Oryza sa | 0.375 | 0.404 | 0.458 | 1e-118 | |
| 125584626 | 1429 | hypothetical protein OsJ_09100 [Oryza sa | 0.375 | 0.385 | 0.456 | 1e-118 |
| >gi|359486850|ref|XP_003633481.1| PREDICTED: uncharacterized protein LOC100254715 [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 703 bits (1814), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/580 (67%), Positives = 475/580 (81%)
Query: 879 KELLEKIAEIDKLKSDNLRKEEEVEALRHCQNELENQISDLQKEKSQLEESIEIMLREGT 938
KELL KI EIDKLK+++L KEEE+ A+RHCQ +LE QIS+LQ EK QLEE++EIM RE +
Sbjct: 690 KELLVKICEIDKLKANHLLKEEEIVAVRHCQRDLETQISNLQAEKRQLEENMEIMQRESS 749
Query: 939 VASKCLNDLQSEIMVLHRDMDSQVSVNRNLESKSLELESSKHEMEVHLHELEEENLQLSE 998
V SKCL+DL++++++L+ M+S VS N+ LE KSLELESSK E+E+HL ELEEEN+QLSE
Sbjct: 750 VTSKCLDDLRNDMVLLNTSMESLVSSNKILERKSLELESSKDELELHLSELEEENVQLSE 809
Query: 999 RICGLEAQLRYLTNERESSRLELENSATHAMSLQDEIRRLEAEMEAQKVETKQKLQDMQK 1058
RI GLEAQLRY T+ERES RL L+NS +HA +LQDEIRRLE EM+AQKV+ KQKLQDMQK
Sbjct: 810 RISGLEAQLRYFTDERESGRLVLQNSESHAKNLQDEIRRLETEMQAQKVDMKQKLQDMQK 869
Query: 1059 RWLGVQEECEYLKVANPKLQATAEGLIEECSLLQKSNAELRKQKVNLHEHCAVLEAQLGE 1118
RWL QEECEYLK ANPKLQATAE LIEECS LQKSN ELRKQK+ ++E C VLEA+L E
Sbjct: 870 RWLESQEECEYLKQANPKLQATAESLIEECSSLQKSNGELRKQKLEMYERCTVLEAKLRE 929
Query: 1119 SEKGFSSLSMKVEALEEKYLSMLEEISSKEKALNLELDALLHENRKHKDKSVTEESLLNQ 1178
S++ F S K+E LEE S LEEIS KEK LN EL+ L+ ENR HK+K EE+LLNQ
Sbjct: 930 SQEYFLYCSRKIEDLEETLSSTLEEISVKEKTLNTELETLVQENRNHKEKLAVEENLLNQ 989
Query: 1179 MYMEKTVEAQNLQREVAHLTEQISATYDEKDGTHSEAVLEVSHLRADKAVLEAALQEVQG 1238
MY+EKTVE ++L+RE+AHL+EQISAT DE++ T SEAVLEVS LRADKA LEAALQEV+
Sbjct: 990 MYLEKTVEVEDLKREIAHLSEQISATQDEREQTASEAVLEVSCLRADKAKLEAALQEVKE 1049
Query: 1239 KLKLSESNLGTLRMESQTKIQQLKSELAAARQNQEVLMADHEKLLNLLEDVKPNEEKFRG 1298
K SE+ L T+R+ES+TK+ L SELAA RQNQEVL ADH KLL LL +VK NEEK +G
Sbjct: 1050 KFTNSENKLNTVRVESETKLMGLVSELAATRQNQEVLAADHAKLLGLLAEVKSNEEKLKG 1109
Query: 1299 TIRGLELKLKASDYERLQLTEEISSLKVQLERTAQFQDEVLSLKKLLNEAKFENERLEAS 1358
TI + LKLK S+YE Q TEEISSLK+QL++TA QDEVL+LK+ LNEAKFENERLEAS
Sbjct: 1110 TINRVGLKLKTSEYEMQQQTEEISSLKMQLQKTALLQDEVLALKRSLNEAKFENERLEAS 1169
Query: 1359 FQILSGDYEELKAERISFMQKISTSQQVVSELDDCKRKKVALQEKVLRLEGDLAAIEALG 1418
Q+ S DYE+LKAE+ISF+QKIS+ Q VSEL+DCK KVAL+EK+LRLEGDL A EAL
Sbjct: 1170 LQLQSADYEDLKAEKISFIQKISSMQAAVSELEDCKSSKVALEEKILRLEGDLTAREALC 1229
Query: 1419 SQEAALKNELAQIRRENSQFQRRIKCLEKEKEDCLSRAQA 1458
+++A +KNEL +I+R NSQF+ +IK LE+EKE+CL+R QA
Sbjct: 1230 ARDAEMKNELGRIKRTNSQFRWKIKYLEEEKEECLNRTQA 1269
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255586967|ref|XP_002534081.1| DNA repair protein RAD50, putative [Ricinus communis] gi|223525882|gb|EEF28304.1| DNA repair protein RAD50, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|296085937|emb|CBI31378.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|147861524|emb|CAN83583.1| hypothetical protein VITISV_009664 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|359481940|ref|XP_002264975.2| PREDICTED: uncharacterized protein LOC100248757 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|255556780|ref|XP_002519423.1| ATSMC2, putative [Ricinus communis] gi|223541286|gb|EEF42837.1| ATSMC2, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|224068875|ref|XP_002326221.1| predicted protein [Populus trichocarpa] gi|222833414|gb|EEE71891.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356533879|ref|XP_003535485.1| PREDICTED: uncharacterized protein LOC100777023 [Glycine max] | Back alignment and taxonomy information |
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| >gi|125542071|gb|EAY88210.1| hypothetical protein OsI_09659 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
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| >gi|125584626|gb|EAZ25290.1| hypothetical protein OsJ_09100 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1468 | ||||||
| TAIR|locus:2030541 | 1999 | AT1G22060 [Arabidopsis thalian | 0.235 | 0.173 | 0.258 | 3.6e-33 | |
| UNIPROTKB|F1PCW0 | 2240 | GOLGA4 "Uncharacterized protei | 0.764 | 0.500 | 0.219 | 1.9e-27 | |
| UNIPROTKB|J9P2D7 | 1364 | EEA1 "Uncharacterized protein" | 0.598 | 0.643 | 0.192 | 1.1e-18 | |
| UNIPROTKB|F1PZD3 | 1411 | EEA1 "Uncharacterized protein" | 0.598 | 0.622 | 0.192 | 1.2e-18 | |
| MGI|MGI:1859646 | 2238 | Golga4 "golgi autoantigen, gol | 0.852 | 0.559 | 0.219 | 9.7e-27 | |
| RGD|1591925 | 2259 | Golga4 "golgin A4" [Rattus nor | 0.879 | 0.571 | 0.218 | 1.3e-26 | |
| UNIPROTKB|Q5U4E6 | 2259 | Golga4 "Golgin subfamily A mem | 0.879 | 0.571 | 0.218 | 1.3e-26 | |
| UNIPROTKB|F1NI68 | 2142 | GOLGA4 "Uncharacterized protei | 0.420 | 0.288 | 0.211 | 2.5e-26 | |
| UNIPROTKB|F1NMQ0 | 2150 | GOLGA4 "Uncharacterized protei | 0.420 | 0.286 | 0.211 | 2.5e-26 | |
| TAIR|locus:2038446 | 1029 | AT1G63300 "AT1G63300" [Arabido | 0.435 | 0.621 | 0.215 | 5.1e-26 |
| TAIR|locus:2030541 AT1G22060 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 301 (111.0 bits), Expect = 3.6e-33, Sum P(3) = 3.6e-33
Identities = 96/372 (25%), Positives = 164/372 (44%)
Query: 10 VPK-GWDKLVVSVVLVETGKTIAKSSKAPVRNGNCRWIETFSESIWIPQDNALKEIEECL 68
VP+ GWDKL +S + ++ K AK++KA VRNG C+W + E+ + QD K+ +E L
Sbjct: 27 VPQAGWDKLFISFIPADSVKATAKTTKALVRNGTCKWGDPIYETTRLLQDTRTKQFDEKL 86
Query: 69 IKLVVTMGSSRSGIVGEALVNLASYMNSKTSVPLTLPLKKCNSGTSLQLKIQCLTPRAKI 128
K+VV MG+SRS I+GEA++NLA Y ++ + LPL+ C+ G L + IQ LT +
Sbjct: 87 YKIVVAMGTSRSSILGEAMINLAEYADALKPFAVILPLQGCDPGAILHVTIQLLTSKTGF 146
Query: 129 RD-EQWKGTNSDMEDVNVDYDEVENKSDASDGTFNRSIGSSSSNQLDGTYHAG-EPNS-- 184
R+ EQ + + D+ + S + ++ + G++ NS
Sbjct: 147 REFEQQREISERGPSTTPDHSSPDESSRCRISPSDETLSHVDKTNIRGSFKEKFRDNSLV 206
Query: 185 -RTMSFSPSGSRNSFD---SVEGSSGRETH--SPLSYLSGLTNNFAGRQDPIXXXXXXXX 238
T+ + S FD + GS E H S ++ + L + +G +
Sbjct: 207 EETVGLNDLDSGLGFDVSSNTSGSLNAEKHDISSINEVDSLKSVVSGDLSGLAQSPQKEK 266
Query: 239 XXXXFNDASRSNQSSFNAKASNQREDFNRVPRGVSSSPLQNAGSSKDLLEAAEVKIEELH 298
+ S+ N+ N ED N++ K LE E I E+
Sbjct: 267 DSLGWQHGWGSDYLGKNSDLGNAIEDNNKL---------------KGFLEDMESSINEIK 311
Query: 299 AEARMWEQNARKLMTDLEKVQQQSLDQLARQASLEMELSKSHAQCDGLKQEIEWLKKLAK 358
E + +A + + + Q + ++ L E+S ++C LK+E+E L+ +
Sbjct: 312 IEVSSLQCHADDIGSKAQDFSQILISEIGSGDHLVREVSVLKSECSKLKEEMERLRNVKS 371
Query: 359 ESEVQSTATENL 370
S +N+
Sbjct: 372 HVLFNSKDQDNV 383
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| UNIPROTKB|F1PCW0 GOLGA4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|J9P2D7 EEA1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1PZD3 EEA1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| MGI|MGI:1859646 Golga4 "golgi autoantigen, golgin subfamily a, 4" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| RGD|1591925 Golga4 "golgin A4" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q5U4E6 Golga4 "Golgin subfamily A member 4" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1NI68 GOLGA4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1NMQ0 GOLGA4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| TAIR|locus:2038446 AT1G63300 "AT1G63300" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1468 | |||
| pfam10358 | 142 | pfam10358, NT-C2, N-terminal C2 in EEIG1 and EHBP1 | 7e-19 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 3e-13 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 3e-12 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 5e-12 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 6e-11 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 2e-10 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 2e-10 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 1e-08 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 1e-08 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 1e-08 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 2e-08 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 6e-08 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 3e-07 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 4e-07 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 8e-07 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 1e-06 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 1e-06 | |
| PRK02224 | 880 | PRK02224, PRK02224, chromosome segregation protein | 1e-06 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 2e-06 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 2e-06 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 3e-06 | |
| pfam05483 | 787 | pfam05483, SCP-1, Synaptonemal complex protein 1 ( | 3e-06 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 4e-06 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 5e-06 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 8e-06 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 8e-06 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 9e-06 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 1e-05 | |
| PRK02224 | 880 | PRK02224, PRK02224, chromosome segregation protein | 1e-05 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 1e-05 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 2e-05 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 2e-05 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 3e-05 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 4e-05 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 6e-05 | |
| pfam05622 | 713 | pfam05622, HOOK, HOOK protein | 6e-05 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 7e-05 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 7e-05 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 9e-05 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 9e-05 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 2e-04 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 3e-04 | |
| pfam07888 | 546 | pfam07888, CALCOCO1, Calcium binding and coiled-co | 3e-04 | |
| COG4942 | 420 | COG4942, COG4942, Membrane-bound metallopeptidase | 5e-04 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 6e-04 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 0.001 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 0.001 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 0.002 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 0.002 | |
| PRK05771 | 646 | PRK05771, PRK05771, V-type ATP synthase subunit I; | 0.002 | |
| pfam01576 | 859 | pfam01576, Myosin_tail_1, Myosin tail | 0.002 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 0.003 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 0.003 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 0.003 | |
| PRK02224 | 880 | PRK02224, PRK02224, chromosome segregation protein | 0.004 | |
| pfam05557 | 722 | pfam05557, MAD, Mitotic checkpoint protein | 0.004 | |
| COG5185 | 622 | COG5185, HEC1, Protein involved in chromosome segr | 0.004 |
| >gnl|CDD|220715 pfam10358, NT-C2, N-terminal C2 in EEIG1 and EHBP1 proteins | Back alignment and domain information |
|---|
Score = 84.3 bits (209), Expect = 7e-19
Identities = 36/124 (29%), Positives = 51/124 (41%), Gaps = 3/124 (2%)
Query: 10 VPKGWDKLVVSVVLVETGKTIAKSSKAPVRNGNCRWIETFSESIWIPQDNALKEIEECLI 69
VP +L V + +SKA V NG W E FS + D + E L+
Sbjct: 19 VPLVNGELFVKWKRGDKKGNSGTTSKALVNNGRAVWNEEFSIPCTLFVDKKGGKFEPKLL 78
Query: 70 KLVV--TMGSSRSGIVGEALVNLASYMNSKTSVPLTLPLKKCNSGTS-LQLKIQCLTPRA 126
VV + ++G+A ++LA Y NSK L LKKC+ + L + I L
Sbjct: 79 TFVVYKVTKKGKKKVLGKADIDLAEYANSKEPTTRRLLLKKCSKKNATLSITISLLPLSE 138
Query: 127 KIRD 130
D
Sbjct: 139 DPND 142
|
This version of the C2 domain was initally identified in the vertebrate estrogen early-induced gene 1 (EEIG1), and its Drosophila ortholog required for uptake of dsRNA via the endocytotic machinery to induce RNAi silencing. It is also in C.elegans ortholog Sym-3 (SYnthetic lethal with Mec-3) and the mammalian protein EHBP1 (EH domain Binding Protein-1) that regulates endocytotic recycling and two plant proteins, RPG that regulates Rhizobium-directed polar growth and PMI1 (Plastid Movement Impaired 1) that is essential for intracellular movement of chloroplasts in response to blue light. Length = 142 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
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| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
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| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
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| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
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| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
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| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
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| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
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| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
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| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
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| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
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| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
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| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
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| >gnl|CDD|114219 pfam05483, SCP-1, Synaptonemal complex protein 1 (SCP-1) | Back alignment and domain information |
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| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
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| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
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| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
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| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
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| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
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| >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional | Back alignment and domain information |
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| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|218661 pfam05622, HOOK, HOOK protein | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|116500 pfam07888, CALCOCO1, Calcium binding and coiled-coil domain (CALCOCO1) like | Back alignment and domain information |
|---|
| >gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein | Back alignment and domain information |
|---|
| >gnl|CDD|227512 COG5185, HEC1, Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1468 | |||
| KOG0161 | 1930 | consensus Myosin class II heavy chain [Cytoskeleto | 99.84 | |
| PF10358 | 143 | NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; | 99.74 | |
| KOG0161 | 1930 | consensus Myosin class II heavy chain [Cytoskeleto | 99.73 | |
| KOG4674 | 1822 | consensus Uncharacterized conserved coiled-coil pr | 99.72 | |
| KOG4674 | 1822 | consensus Uncharacterized conserved coiled-coil pr | 99.7 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 99.66 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 99.54 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 99.37 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 99.36 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 99.32 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 99.29 | |
| COG1196 | 1163 | Smc Chromosome segregation ATPases [Cell division | 99.22 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 99.19 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 99.14 | |
| COG1196 | 1163 | Smc Chromosome segregation ATPases [Cell division | 99.02 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 99.01 | |
| PF01576 | 859 | Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu | 98.93 | |
| PF10174 | 775 | Cast: RIM-binding protein of the cytomatrix active | 98.89 | |
| PF01576 | 859 | Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu | 98.85 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 98.74 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 98.73 | |
| PF07888 | 546 | CALCOCO1: Calcium binding and coiled-coil domain ( | 98.53 | |
| PF10174 | 775 | Cast: RIM-binding protein of the cytomatrix active | 98.41 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 98.35 | |
| PF07888 | 546 | CALCOCO1: Calcium binding and coiled-coil domain ( | 98.35 | |
| PF00038 | 312 | Filament: Intermediate filament protein; InterPro: | 98.22 | |
| PF05557 | 722 | MAD: Mitotic checkpoint protein; InterPro: IPR0086 | 98.15 | |
| PF12128 | 1201 | DUF3584: Protein of unknown function (DUF3584); In | 98.15 | |
| PF05557 | 722 | MAD: Mitotic checkpoint protein; InterPro: IPR0086 | 98.09 | |
| PF12128 | 1201 | DUF3584: Protein of unknown function (DUF3584); In | 97.99 | |
| KOG4643 | 1195 | consensus Uncharacterized coiled-coil protein [Fun | 97.94 | |
| PF05701 | 522 | WEMBL: Weak chloroplast movement under blue light; | 97.84 | |
| KOG0250 | 1074 | consensus DNA repair protein RAD18 (SMC family pro | 97.77 | |
| KOG4643 | 1195 | consensus Uncharacterized coiled-coil protein [Fun | 97.71 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 97.71 | |
| PF00038 | 312 | Filament: Intermediate filament protein; InterPro: | 97.65 | |
| KOG0962 | 1294 | consensus DNA repair protein RAD50, ABC-type ATPas | 97.62 | |
| KOG0978 | 698 | consensus E3 ubiquitin ligase involved in syntaxin | 97.61 | |
| KOG0250 | 1074 | consensus DNA repair protein RAD18 (SMC family pro | 97.46 | |
| KOG0612 | 1317 | consensus Rho-associated, coiled-coil containing p | 97.44 | |
| KOG0978 | 698 | consensus E3 ubiquitin ligase involved in syntaxin | 97.36 | |
| PF09730 | 717 | BicD: Microtubule-associated protein Bicaudal-D; I | 97.32 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 97.3 | |
| PF00261 | 237 | Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop | 97.29 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 97.2 | |
| PF09730 | 717 | BicD: Microtubule-associated protein Bicaudal-D; I | 97.13 | |
| PF05483 | 786 | SCP-1: Synaptonemal complex protein 1 (SCP-1); Int | 97.11 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 97.1 | |
| PF09726 | 697 | Macoilin: Transmembrane protein; InterPro: IPR0191 | 97.08 | |
| PRK04778 | 569 | septation ring formation regulator EzrA; Provision | 97.07 | |
| PF05911 | 769 | DUF869: Plant protein of unknown function (DUF869) | 97.02 | |
| KOG0612 | 1317 | consensus Rho-associated, coiled-coil containing p | 96.79 | |
| KOG0996 | 1293 | consensus Structural maintenance of chromosome pro | 96.73 | |
| PF05622 | 713 | HOOK: HOOK protein; InterPro: IPR008636 This famil | 96.72 | |
| PF09728 | 309 | Taxilin: Myosin-like coiled-coil protein; InterPro | 96.7 | |
| KOG0976 | 1265 | consensus Rho/Rac1-interacting serine/threonine ki | 96.67 | |
| KOG0976 | 1265 | consensus Rho/Rac1-interacting serine/threonine ki | 96.61 | |
| KOG0964 | 1200 | consensus Structural maintenance of chromosome pro | 96.58 | |
| KOG0995 | 581 | consensus Centromere-associated protein HEC1 [Cell | 96.46 | |
| PF05010 | 207 | TACC: Transforming acidic coiled-coil-containing p | 96.35 | |
| PF10473 | 140 | CENP-F_leu_zip: Leucine-rich repeats of kinetochor | 96.29 | |
| KOG0995 | 581 | consensus Centromere-associated protein HEC1 [Cell | 96.16 | |
| PF05622 | 713 | HOOK: HOOK protein; InterPro: IPR008636 This famil | 95.97 | |
| PRK11637 | 428 | AmiB activator; Provisional | 95.76 | |
| PF15070 | 617 | GOLGA2L5: Putative golgin subfamily A member 2-lik | 95.66 | |
| KOG0971 | 1243 | consensus Microtubule-associated protein dynactin | 95.61 | |
| PF00261 | 237 | Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop | 95.5 | |
| KOG0964 | 1200 | consensus Structural maintenance of chromosome pro | 95.24 | |
| KOG0933 | 1174 | consensus Structural maintenance of chromosome pro | 95.22 | |
| PF05701 | 522 | WEMBL: Weak chloroplast movement under blue light; | 95.18 | |
| KOG0977 | 546 | consensus Nuclear envelope protein lamin, intermed | 95.14 | |
| PF09726 | 697 | Macoilin: Transmembrane protein; InterPro: IPR0191 | 95.08 | |
| KOG0996 | 1293 | consensus Structural maintenance of chromosome pro | 94.98 | |
| PF14662 | 193 | CCDC155: Coiled-coil region of CCDC155 | 94.93 | |
| PF05667 | 594 | DUF812: Protein of unknown function (DUF812); Inte | 94.81 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 94.79 | |
| PF14662 | 193 | CCDC155: Coiled-coil region of CCDC155 | 94.69 | |
| PRK09039 | 343 | hypothetical protein; Validated | 94.52 | |
| PF10473 | 140 | CENP-F_leu_zip: Leucine-rich repeats of kinetochor | 94.12 | |
| PF09755 | 310 | DUF2046: Uncharacterized conserved protein H4 (DUF | 94.03 | |
| TIGR03185 | 650 | DNA_S_dndD DNA sulfur modification protein DndD. T | 94.02 | |
| PF09787 | 511 | Golgin_A5: Golgin subfamily A member 5; InterPro: | 93.99 | |
| PF05911 | 769 | DUF869: Plant protein of unknown function (DUF869) | 93.46 | |
| KOG0962 | 1294 | consensus DNA repair protein RAD50, ABC-type ATPas | 93.38 | |
| KOG0977 | 546 | consensus Nuclear envelope protein lamin, intermed | 93.01 | |
| PF06160 | 560 | EzrA: Septation ring formation regulator, EzrA ; I | 93.0 | |
| PRK11637 | 428 | AmiB activator; Provisional | 92.95 | |
| PF08317 | 325 | Spc7: Spc7 kinetochore protein; InterPro: IPR01325 | 92.92 | |
| COG5185 | 622 | HEC1 Protein involved in chromosome segregation, i | 92.35 | |
| PF12718 | 143 | Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 | 92.24 | |
| KOG0971 | 1243 | consensus Microtubule-associated protein dynactin | 91.91 | |
| PF05667 | 594 | DUF812: Protein of unknown function (DUF812); Inte | 91.88 | |
| PF14915 | 305 | CCDC144C: CCDC144C protein coiled-coil region | 91.7 | |
| cd08389 | 124 | C2A_Synaptotagmin-14_16 C2A domain first repeat pr | 90.64 | |
| KOG0963 | 629 | consensus Transcription factor/CCAAT displacement | 90.61 | |
| KOG0980 | 980 | consensus Actin-binding protein SLA2/Huntingtin-in | 90.16 | |
| PF08614 | 194 | ATG16: Autophagy protein 16 (ATG16); InterPro: IPR | 90.13 | |
| PRK09039 | 343 | hypothetical protein; Validated | 89.98 | |
| PF09755 | 310 | DUF2046: Uncharacterized conserved protein H4 (DUF | 89.72 | |
| KOG4673 | 961 | consensus Transcription factor TMF, TATA element m | 89.57 | |
| KOG0999 | 772 | consensus Microtubule-associated protein Bicaudal- | 89.44 | |
| PF04849 | 306 | HAP1_N: HAP1 N-terminal conserved region; InterPro | 89.19 | |
| KOG0018 | 1141 | consensus Structural maintenance of chromosome pro | 89.1 | |
| PF14915 | 305 | CCDC144C: CCDC144C protein coiled-coil region | 88.86 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 88.86 | |
| KOG0963 | 629 | consensus Transcription factor/CCAAT displacement | 88.85 | |
| PF15619 | 194 | Lebercilin: Ciliary protein causing Leber congenit | 88.84 | |
| COG1579 | 239 | Zn-ribbon protein, possibly nucleic acid-binding [ | 88.67 | |
| PF10498 | 359 | IFT57: Intra-flagellar transport protein 57 ; Inte | 88.46 | |
| PF05483 | 786 | SCP-1: Synaptonemal complex protein 1 (SCP-1); Int | 88.43 | |
| TIGR01005 | 754 | eps_transp_fam exopolysaccharide transport protein | 88.15 | |
| COG5185 | 622 | HEC1 Protein involved in chromosome segregation, i | 87.6 | |
| smart00787 | 312 | Spc7 Spc7 kinetochore protein. This domain is foun | 87.52 | |
| KOG0994 | 1758 | consensus Extracellular matrix glycoprotein Lamini | 87.47 | |
| PF06160 | 560 | EzrA: Septation ring formation regulator, EzrA ; I | 87.38 | |
| PF04849 | 306 | HAP1_N: HAP1 N-terminal conserved region; InterPro | 87.36 | |
| PF14992 | 280 | TMCO5: TMCO5 family | 87.3 | |
| PF13851 | 201 | GAS: Growth-arrest specific micro-tubule binding | 87.22 | |
| KOG1029 | 1118 | consensus Endocytic adaptor protein intersectin [S | 87.16 | |
| PF07798 | 177 | DUF1640: Protein of unknown function (DUF1640); In | 87.06 | |
| PF06705 | 247 | SF-assemblin: SF-assemblin/beta giardin | 86.87 | |
| cd04052 | 111 | C2B_Tricalbin-like C2 domain second repeat present | 86.35 | |
| PF08317 | 325 | Spc7: Spc7 kinetochore protein; InterPro: IPR01325 | 86.19 | |
| PF13514 | 1111 | AAA_27: AAA domain | 86.08 | |
| TIGR03185 | 650 | DNA_S_dndD DNA sulfur modification protein DndD. T | 85.97 | |
| COG1579 | 239 | Zn-ribbon protein, possibly nucleic acid-binding [ | 85.82 | |
| PF15070 | 617 | GOLGA2L5: Putative golgin subfamily A member 2-lik | 85.8 | |
| TIGR01843 | 423 | type_I_hlyD type I secretion membrane fusion prote | 84.99 | |
| PF09789 | 319 | DUF2353: Uncharacterized coiled-coil protein (DUF2 | 84.88 | |
| PLN02939 | 977 | transferase, transferring glycosyl groups | 84.88 | |
| PF08614 | 194 | ATG16: Autophagy protein 16 (ATG16); InterPro: IPR | 84.84 | |
| TIGR03007 | 498 | pepcterm_ChnLen polysaccharide chain length determ | 84.48 | |
| cd08682 | 126 | C2_Rab11-FIP_classI C2 domain found in Rab11-famil | 84.28 | |
| PF04912 | 388 | Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamit | 83.8 | |
| PF15254 | 861 | CCDC14: Coiled-coil domain-containing protein 14 | 83.63 | |
| PF10481 | 307 | CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0 | 83.5 | |
| PRK04863 | 1486 | mukB cell division protein MukB; Provisional | 82.94 | |
| cd04043 | 126 | C2_Munc13_fungal C2 domain in Munc13 (mammalian un | 82.69 | |
| PF07926 | 132 | TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: | 82.63 | |
| PF06818 | 202 | Fez1: Fez1; InterPro: IPR009638 This family repres | 82.47 | |
| PRK04863 | 1486 | mukB cell division protein MukB; Provisional | 82.12 | |
| cd08391 | 121 | C2A_C2C_Synaptotagmin_like C2 domain first and thi | 81.31 | |
| PF09789 | 319 | DUF2353: Uncharacterized coiled-coil protein (DUF2 | 80.98 | |
| KOG0982 | 502 | consensus Centrosomal protein Nuf [Cell cycle cont | 80.68 | |
| PF12325 | 120 | TMF_TATA_bd: TATA element modulatory factor 1 TATA | 80.63 | |
| cd08388 | 128 | C2A_Synaptotagmin-4-11 C2A domain first repeat pre | 80.32 | |
| TIGR02680 | 1353 | conserved hypothetical protein TIGR02680. Members | 80.06 |
| >KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.4e-12 Score=168.34 Aligned_cols=491 Identities=23% Similarity=0.290 Sum_probs=313.7
Q ss_pred cccccchhhHHHHHHHHHHHhhhhhchhhhHHHHHHHHHhHHHHHHhhhHHHHHHHhHHHHHHHHH--------hhccch
Q 041227 869 EFKSDVTETAKELLEKIAEIDKLKSDNLRKEEEVEALRHCQNELENQISDLQKEKSQLEESIEIML--------REGTVA 940 (1468)
Q Consensus 869 e~e~~~~~l~~e~~~~~~ei~~Lk~~~~~ke~E~~~l~~~k~ElE~~is~lq~Ek~qLee~~e~~~--------~e~~i~ 940 (1468)
+.+..+..+.+....-.+.|+.+ ..+.+.-.+.+..|.+.+..++.++.+|-+.++--. +=+...
T Consensus 1284 e~e~~~~~~~r~~~~~~~qle~~-------k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~ 1356 (1930)
T KOG0161|consen 1284 EAEAKLSALSRDKQALESQLEEL-------KRQLEEETREKSALENALRQLEHELDLLREQLEEEQEAKNELERKLSKAN 1356 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444 344555556667777777777777776655553221 111111
Q ss_pred hhhhhhhhhhHHHHhcccccccchhhhhhhhhhhhhcchhhhhhhhhhhhhhhHHHHHHHhhHHHHHhhhhhhhccchhh
Q 041227 941 SKCLNDLQSEIMVLHRDMDSQVSVNRNLESKSLELESSKHEMEVHLHELEEENLQLSERICGLEAQLRYLTNERESSRLE 1020 (1468)
Q Consensus 941 skcld~~~~dl~~l~ss~ds~vs~n~~le~k~~eles~K~elE~hls~Le~En~qLserisgLEaql~~lt~E~es~~l~ 1020 (1468)
+.|..+.+. .. --+.+...+++-.|..+...+.+++.....+.-.+..||.-...|..|-+...+.
T Consensus 1357 ~e~~~~~~k----~e----------~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d 1422 (1930)
T KOG0161|consen 1357 AELAQWKKK----FE----------EEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLD 1422 (1930)
T ss_pred HHHHHHHHH----HH----------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 121111111 11 1122334677888888888888888888888888888888888899999999999
Q ss_pred hccchhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhhhhhhhHHhhcCchhhhh-------hhhHHHHhhhHHH
Q 041227 1021 LENSATHAMSLQDEIRRLEAEMEAQKVETKQKLQDMQKRWLGVQEECEYLKVANPKLQAT-------AEGLIEECSLLQK 1093 (1468)
Q Consensus 1021 l~nS~s~~~~Lqdei~r~~~e~e~qk~~~kqk~qe~q~~wse~Qee~e~Lr~~N~kLQaT-------~e~lieec~slQ~ 1093 (1468)
++..++.+..|..++.+.. ....+.|++..+++-....+|.+..-+.....+|+-+ .+.+-.+-+.|+.
T Consensus 1423 ~~~~~~~~~~le~k~k~f~----k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ 1498 (1930)
T KOG0161|consen 1423 LERSRAAVAALEKKQKRFE----KLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQ 1498 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998888654 4455666666666666666666655555555555444 4455556677777
Q ss_pred hHHHHHHHHhhhhhhhHHHHHHhhhhhhhhhhhhhhHHHHHHHHHhHHHHhhhhhhHhhHHHHHHHHHhhhhcchhhhHH
Q 041227 1094 SNAELRKQKVNLHEHCAVLEAQLGESEKGFSSLSMKVEALEEKYLSMLEEISSKEKALNLELDALLHENRKHKDKSVTEE 1173 (1468)
Q Consensus 1094 ~~~eLr~qklelh~~~t~lE~kL~eS~~~f~~~~k~Ve~LE~kl~s~le~issKEk~l~~ELe~l~qE~~~~~ek~~~~~ 1173 (1468)
...+|..++.++...+..||.-++-+...-.+.-.+++.+|+.+. ..++... .+..++ +.-|+...+
T Consensus 1499 ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le-~eE~~~l---r~~~~~---------~~~r~e~er 1565 (1930)
T KOG0161|consen 1499 EIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALE-AEEDKKL---RLQLEL---------QQLRSEIER 1565 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHH---HHHHHH---------HHHHHHHHH
Confidence 778888888888888888888888888888888888888888754 1121111 111111 111111111
Q ss_pred HHHHHhhhhhHHHhh----hHHHHHHHHHHhhhhhhcccccchhHHHHHHhhhhhhhHHHHHHHHHHHhHhhhhhcchhh
Q 041227 1174 SLLNQMYMEKTVEAQ----NLQREVAHLTEQISATYDEKDGTHSEAVLEVSHLRADKAVLEAALQEVQGKLKLSESNLGT 1249 (1468)
Q Consensus 1174 ~llnq~~~Ek~veve----nLqrEv~~Lt~QiSat~dere~~~s~av~EvS~LrAdkA~lE~~l~ev~~k~~~~es~l~~ 1249 (1468)
.--+|.-+.+ ++++.|.++++ +-+...+..+.+ +|..| |+|..+.++.-++-|+...-.+
T Consensus 1566 -----~l~ek~Ee~E~~rk~~~~~i~~~q~----~Le~E~r~k~e~------~r~KK-kle~di~elE~~ld~ank~~~d 1629 (1930)
T KOG0161|consen 1566 -----RLQEKDEEIEELRKNLQRQLESLQA----ELEAETRSKSEA------LRSKK-KLEGDINELEIQLDHANKANED 1629 (1930)
T ss_pred -----HHHhhhHHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHH------Hhhhh-hhhcchHHHHHHHHHHHHhhHH
Confidence 1123444444 44555555544 333444444444 45555 7777777777777777777777
Q ss_pred hhhhH---HHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHHhhhCcchHhhhhhhhhhccccccchHHHHHHHHHhhhhHH
Q 041227 1250 LRMES---QTKIQQLKSELAAARQNQEVLMADHEKLLNLLEDVKPNEEKFRGTIRGLELKLKASDYERLQLTEEISSLKV 1326 (1468)
Q Consensus 1250 l~~Es---~~ki~~l~~~L~askqn~emL~~d~ek~~~lle~~kSneeklk~t~~~LElklk~s~yErqq~~eE~s~Lkv 1326 (1468)
+++.- ..-++.|..++..++...+=+-+-....-+=+..+.+.-+-+++.+..++--=+..+.|...+.|.+..+-.
T Consensus 1630 ~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~~ 1709 (1930)
T KOG0161|consen 1630 AQKQLKKLQAQLKELQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNELNA 1709 (1930)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Confidence 77553 344555555665555554444444444555566777888889999999998889999999999999998876
Q ss_pred H----HHHHhhhhhHHHHHHHHHHHHhhhhHHHHHHHHhhhhch--------------HHHHHHHhhHHHhhhhHHHHHh
Q 041227 1327 Q----LERTAQFQDEVLSLKKLLNEAKFENERLEASFQILSGDY--------------EELKAERISFMQKISTSQQVVS 1388 (1468)
Q Consensus 1327 Q----lqk~~~lqdEv~~lk~sL~~~kfek~rLe~sl~~~S~e~--------------eeLkaek~~~~~kis~~q~~~s 1388 (1468)
| ...=-.+..+|..|++.|.+.-.+.+..+.-.+-...+| .-|-..|..+.+-+-+||--+.
T Consensus 1710 ~~s~l~~~KrklE~~i~~l~~elee~~~~~~~~~Er~kka~~~a~~~~~el~~Eq~~~~~le~~k~~LE~~~kdLq~rL~ 1789 (1930)
T KOG0161|consen 1710 QNSSLTAEKRKLEAEIAQLQSELEEEQSELRAAEERAKKAQADAAKLAEELRKEQETSQKLERLKKSLERQVKDLQLRLD 1789 (1930)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 233345777888888888887777666555544443333 3344567777777778887777
Q ss_pred hhhh-----hhhhhhHHHHHHHhhcCchhH
Q 041227 1389 ELDD-----CKRKKVALQEKVLRLEGDLAA 1413 (1468)
Q Consensus 1389 eled-----~k~sk~sleeKl~rle~dl~a 1413 (1468)
++|. .|.....|+.||--||+.|..
T Consensus 1790 e~E~~a~~~~k~~i~~Learir~LE~~l~~ 1819 (1930)
T KOG0161|consen 1790 EAEQAALKGGKKQIAKLEARIRELESELEG 1819 (1930)
T ss_pred HHHHhhhhccHHHHHHHHHHHHHHHHHHhH
Confidence 7764 355567899999999998865
|
|
| >PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen [] | Back alignment and domain information |
|---|
| >KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril | Back alignment and domain information |
|---|
| >PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] | Back alignment and domain information |
|---|
| >PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril | Back alignment and domain information |
|---|
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) | Back alignment and domain information |
|---|
| >PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] | Back alignment and domain information |
|---|
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) | Back alignment and domain information |
|---|
| >PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope | Back alignment and domain information |
|---|
| >PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins | Back alignment and domain information |
|---|
| >PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
| >PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins | Back alignment and domain information |
|---|
| >PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
| >KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function | Back alignment and domain information |
|---|
| >KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope | Back alignment and domain information |
|---|
| >KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] | Back alignment and domain information |
|---|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
| >PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] | Back alignment and domain information |
|---|
| >PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex | Back alignment and domain information |
|---|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
| >PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes | Back alignment and domain information |
|---|
| >PRK04778 septation ring formation regulator EzrA; Provisional | Back alignment and domain information |
|---|
| >PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants | Back alignment and domain information |
|---|
| >KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms | Back alignment and domain information |
|---|
| >PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed | Back alignment and domain information |
|---|
| >KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules | Back alignment and domain information |
|---|
| >PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] | Back alignment and domain information |
|---|
| >KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms | Back alignment and domain information |
|---|
| >PRK11637 AmiB activator; Provisional | Back alignment and domain information |
|---|
| >PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 | Back alignment and domain information |
|---|
| >KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] | Back alignment and domain information |
|---|
| >PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function | Back alignment and domain information |
|---|
| >KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] | Back alignment and domain information |
|---|
| >PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes | Back alignment and domain information |
|---|
| >KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF14662 CCDC155: Coiled-coil region of CCDC155 | Back alignment and domain information |
|---|
| >PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF14662 CCDC155: Coiled-coil region of CCDC155 | Back alignment and domain information |
|---|
| >PRK09039 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] | Back alignment and domain information |
|---|
| >PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain | Back alignment and domain information |
|---|
| >TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD | Back alignment and domain information |
|---|
| >PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure | Back alignment and domain information |
|---|
| >PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants | Back alignment and domain information |
|---|
| >KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] | Back alignment and domain information |
|---|
| >PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site | Back alignment and domain information |
|---|
| >PRK11637 AmiB activator; Provisional | Back alignment and domain information |
|---|
| >PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] | Back alignment and domain information |
|---|
| >COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] | Back alignment and domain information |
|---|
| >PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
| >PF14915 CCDC144C: CCDC144C protein coiled-coil region | Back alignment and domain information |
|---|
| >cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
| >KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] | Back alignment and domain information |
|---|
| >KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] | Back alignment and domain information |
|---|
| >PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells | Back alignment and domain information |
|---|
| >PRK09039 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain | Back alignment and domain information |
|---|
| >KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription] | Back alignment and domain information |
|---|
| >KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues | Back alignment and domain information |
|---|
| >KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF14915 CCDC144C: CCDC144C protein coiled-coil region | Back alignment and domain information |
|---|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] | Back alignment and domain information |
|---|
| >PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease | Back alignment and domain information |
|---|
| >COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] | Back alignment and domain information |
|---|
| >PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms | Back alignment and domain information |
|---|
| >PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex | Back alignment and domain information |
|---|
| >TIGR01005 eps_transp_fam exopolysaccharide transport protein family | Back alignment and domain information |
|---|
| >COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >smart00787 Spc7 Spc7 kinetochore protein | Back alignment and domain information |
|---|
| >KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] | Back alignment and domain information |
|---|
| >PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site | Back alignment and domain information |
|---|
| >PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues | Back alignment and domain information |
|---|
| >PF14992 TMCO5: TMCO5 family | Back alignment and domain information |
|---|
| >PF13851 GAS: Growth-arrest specific micro-tubule binding | Back alignment and domain information |
|---|
| >KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins | Back alignment and domain information |
|---|
| >PF06705 SF-assemblin: SF-assemblin/beta giardin | Back alignment and domain information |
|---|
| >cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
| >PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] | Back alignment and domain information |
|---|
| >PF13514 AAA_27: AAA domain | Back alignment and domain information |
|---|
| >TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD | Back alignment and domain information |
|---|
| >COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] | Back alignment and domain information |
|---|
| >PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 | Back alignment and domain information |
|---|
| >TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family | Back alignment and domain information |
|---|
| >PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function | Back alignment and domain information |
|---|
| >PLN02939 transferase, transferring glycosyl groups | Back alignment and domain information |
|---|
| >PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells | Back alignment and domain information |
|---|
| >TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
| >cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
| >PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) [] | Back alignment and domain information |
|---|
| >PF15254 CCDC14: Coiled-coil domain-containing protein 14 | Back alignment and domain information |
|---|
| >PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore [] | Back alignment and domain information |
|---|
| >PRK04863 mukB cell division protein MukB; Provisional | Back alignment and domain information |
|---|
| >cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
| >PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) | Back alignment and domain information |
|---|
| >PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein | Back alignment and domain information |
|---|
| >PRK04863 mukB cell division protein MukB; Provisional | Back alignment and domain information |
|---|
| >cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
| >PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function | Back alignment and domain information |
|---|
| >KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] | Back alignment and domain information |
|---|
| >PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] | Back alignment and domain information |
|---|
| >cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
| >TIGR02680 conserved hypothetical protein TIGR02680 | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 93.8 bits (232), Expect = 3e-19
Identities = 117/769 (15%), Positives = 226/769 (29%), Gaps = 244/769 (31%)
Query: 241 YSFNDASRSNQSSFNAKASNQREDFNRVPRGVSSSPLQNAGSSKDLLEAAEVK--IEELH 298
Y + D + +F ++F+ + V P K +L E+ I
Sbjct: 16 YQYKDILSVFEDAF-------VDNFD--CKDVQDMP-------KSILSKEEIDHIIMSKD 59
Query: 299 AEARMWEQNARKLMTDLEKVQQQSLDQLARQASLEMELSKSHAQCDGLKQEIEWLK-KLA 357
A + +L L Q++ + + +E + L+ ++L +
Sbjct: 60 AVSG-----TLRLFWTLLSKQEEMVQKF-------VE--------EVLRINYKFLMSPIK 99
Query: 358 KESEVQSTATENLKFQARDTDKKINELEDEIKFQKESNANLAIQLNKTQESNI-ELISIL 416
E S T Q D+ N D F K N ++ +L L
Sbjct: 100 TEQRQPSMMTRMYIEQ---RDRLYN---DNQVFAK---------YNVSRLQPYLKLRQAL 144
Query: 417 QELEETLAKQKMEIEDLSKMKSEFEEVVGDSKQ---INTAKQILVKKRRD--------TS 465
EL + + + + G K ++ V+ + D +
Sbjct: 145 LEL------RPAKNVLIDGVL-------GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191
Query: 466 CDSDQEGSIVEHPIRDLNAKIEQQDDRNLELELQKLQEAKKNLESTVQFLEKSLVEKSHE 525
C+S + +++E ++ L +I D N K + S L + L K +E
Sbjct: 192 CNSPE--TVLE-MLQKLLYQI----DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 526 IEMERHLKTQTLMHYEAEWRSRIAEKEENIVNLEAKLSEVLCAQALKEKSFGNE------ 579
L +V L V A+A +F
Sbjct: 245 ----NCL----------------------LV-----LLNVQNAKAWN--AFNLSCKILLT 271
Query: 580 -DDHDLVKEVDVLKQKVLELEKDCNELTEEN-LALLFK-LKESGKDLLTGGASSHECPDN 636
+ + + L+ LT + +LL K L +DL P
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL----------P-- 319
Query: 637 KSVFESESEVVQLKSQICKL-EEELQERNALIERLSTYENRSDDLENQLQAFKDKVCYLD 695
EV+ + + E +++ A + D L +++ + L+
Sbjct: 320 -------REVLTTNPRRLSIIAESIRDGLATWDNWKHVNC--DKLTTIIESSLN---VLE 367
Query: 696 GELCKSRFRAQEQEVQIAALQQQLELFQGKEAESKDHPAAVCPLCKIYESDDFLEMSRLL 755
+ F +L +F S P + L I+ ++ ++
Sbjct: 368 PAEYRKMF-------------DRLSVFP----PSAHIPTIL--LSLIWFDVIKSDVMVVV 408
Query: 756 SELYEQIQLSLANLKKQQLLQQPSAFGSDKSIVPTSTDLTTQKERVEAILNNFMELKRLF 815
++L+ + SL ++KQ KE +I + ++ELK
Sbjct: 409 NKLH---KYSL--VEKQ------------------------PKESTISIPSIYLELKVKL 439
Query: 816 EEKINLSEDEIQSKKEITAVEANSDVDQNGLQGPDSNEIVLSTHI-HGVDSQHMEFKSDV 874
E + L + + D + L P + +HI H H++
Sbjct: 440 ENEYAL------HRSIVDHYNIPKTFDSDDL-IPPYLDQYFYSHIGH-----HLK----- 482
Query: 875 TETAKELLEKIAEIDKLKSDNLR----KEEEVEALRHCQNELENQISDLQKEK------- 923
E E++ + D R K + + N + L+ K
Sbjct: 483 ---NIEHPERMTLFRMVFLD-FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDND 538
Query: 924 ---SQLEESIEIMLR---EGTVASKCLNDLQSEIM----VLHRDMDSQV 962
+L +I L E + SK + L+ +M + + QV
Sbjct: 539 PKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A Length = 575 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1468 | |||
| 1c1g_A | 284 | Tropomyosin; contractIle protein; 7.00A {Sus scrof | 98.39 | |
| 1i84_S | 1184 | Smooth muscle myosin heavy chain; muscle protein, | 97.94 | |
| 1i84_S | 1184 | Smooth muscle myosin heavy chain; muscle protein, | 97.85 | |
| 2v71_A | 189 | Nuclear distribution protein NUDE-like 1; developm | 96.7 | |
| 3na7_A | 256 | HP0958; flagellar biogenesis, flagellum export, C4 | 94.26 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 93.88 | |
| 3o0z_A | 168 | RHO-associated protein kinase 1; coiled-coil, tran | 93.77 | |
| 3na7_A | 256 | HP0958; flagellar biogenesis, flagellum export, C4 | 93.7 | |
| 2dfs_A | 1080 | Myosin-5A; myosin-V, inhibited state, cryoelectron | 91.66 | |
| 2v66_B | 111 | Nuclear distribution protein NUDE-like 1; structur | 91.65 | |
| 2dfs_A | 1080 | Myosin-5A; myosin-V, inhibited state, cryoelectron | 91.61 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 91.43 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 91.15 | |
| 2v71_A | 189 | Nuclear distribution protein NUDE-like 1; developm | 85.35 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 83.44 | |
| 3tnu_B | 129 | Keratin, type II cytoskeletal 5; coiled-coil, stru | 82.52 | |
| 3tnu_A | 131 | Keratin, type I cytoskeletal 14; coiled-coil, stru | 82.17 |
| >1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A | Back alignment and structure |
|---|
Probab=98.39 E-value=0.00052 Score=69.74 Aligned_cols=55 Identities=18% Similarity=0.192 Sum_probs=26.2
Q ss_pred hhhhhhhhhhhhHHHHHHHhhHHHHHhhhhhhhccchhhhccchhhhhhHHHHHH
Q 041227 982 MEVHLHELEEENLQLSERICGLEAQLRYLTNERESSRLELENSATHAMSLQDEIR 1036 (1468)
Q Consensus 982 lE~hls~Le~En~qLserisgLEaql~~lt~E~es~~l~l~nS~s~~~~Lqdei~ 1036 (1468)
+...+..++.+...+.++|..++.++..+..+.....-.+......+..+..++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 128 (284)
T 1c1g_A 74 AEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMK 128 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555555444444444444444444444443
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A | Back alignment and structure |
|---|
| >2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} | Back alignment and structure |
|---|
| >3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} | Back alignment and structure |
|---|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
| >3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} | Back alignment and structure |
|---|
| >3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} | Back alignment and structure |
|---|
| >2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} | Back alignment and structure |
|---|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
| >2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} | Back alignment and structure |
|---|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
| >3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
| >3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1468 | |||
| d1rlwa_ | 126 | Domain from cytosolic phospholipase A2 {Human (Hom | 90.85 |
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.85 E-value=0.11 Score=47.17 Aligned_cols=53 Identities=8% Similarity=0.179 Sum_probs=39.7
Q ss_pred eeeEE-eccCCCccccceeeechhhhccccCccceeeccCCCCCCCeEEEEeeeec
Q 041227 69 IKLVV-TMGSSRSGIVGEALVNLASYMNSKTSVPLTLPLKKCNSGTSLQLKIQCLT 123 (1468)
Q Consensus 69 YKfVV-SmGSSRSgiLGEasINLAdYaeAtkP~sVSLPLK~cnsGTVLHVtIQ~Lt 123 (1468)
.+|.| -.+..+..+||+|.|+|+++. .-.+..+.+||+....|. +||+++.+.
T Consensus 72 L~v~V~d~d~~~d~~lG~~~i~L~~l~-~~~~~~~~~~L~~~~~g~-i~~~l~~~~ 125 (126)
T d1rlwa_ 72 LEITLMDANYVMDETLGTATFTVSSMK-VGEKKEVPFIFNQVTEMV-LEMSLEVAS 125 (126)
T ss_dssp EEEEEEECCSSCCEEEEEEEEEGGGSC-TTCEEEEEEEETTTEEEE-EEEEEECCC
T ss_pred EEEEEEECCCCCCCeEEEEEEEHHHcc-CCCeEEEEEEccCCCeEE-EEEEEEEEe
Confidence 44555 345556789999999999975 456788999998875554 599888664
|