Citrus Sinensis ID: 041228

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------54
MVFKVSLVLVLLSISAGSFDAVARAHDHRRTNSFNSNTSSLAGIKLPDHMSFNALLKVKQTKHPERIDTQEKDGDVALDDDDGDDLLTLKPSKQKVKLHLKHRSKNRETEPKKSVSESTIRDLTRIQALHRRIIEKKNQNTVSRLKKESQKSKKQIKPVVTPAASPESYASGVSGQLVATLESGVSLGAGEYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFKNISCHDPRCHLVSSPDPPRPCQAENQTCPYFYWYGDSSNTTGDFALETFTVNLSTPTGKSEFRQVENVMFGCGHWNRGLFHGAAGLLGLGRGPLSFSSQLQSLYGHSFSYCLVDRNSDTNVSSKLIFGEDKDLLNHPNLNFTSLVSGKENPVDTFYYLQIKSIIVGGEVLSIPDETWRLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQAFMKKVKGYPLVKDFPILDPCYNVSGIEKMELPEFGIQFADGGVWNFPVENYFIRLDPEDVVCLAILGTPRSALSIIGNYQQQNFHI
cccEEHHHHHHHHHHccEEcccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccccccHHHcccccHHHHHHHHccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccEEEEEEEcccccEEEEEEEcccccEEEEccccccccccccccccccccccccccccccHHccccccccccccccccccccEEEEEEccccEEEEEEEEEEEEEccccccccccccccccEEEEEEEccccccccccEEEEcccccccHHHHHcccccccEEEEcccccccccccEEEEEccccccccccccEEEEEcccccccccccEEEEEEEEEEccEEEccccccccccccccccEEEEcccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccEEEEEEccccEEEEccccEEEEEccccEEEEEEEccccccEEEEEEEEEcEEEc
cccHHHHHHHHHHHHHccccccccccccccccccccccccccEEEcccccccccEEcccccccccccccccccccccccccccccHcccccccccEEEEEEcccccccccccccHHHHccccccEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEcccccccccEEEEEEEEccccccEEEEEEccccEEEEEccccHHHcccccccccccccccccccccccHHHHHccccccccccccccccEEEEEEEcccccccEEEEEEEEEEccccccccccccEcccEEEEcccccccccccccEEEEcccccccHHHHHHHHccccEEEEEcccccccccccEEEEccccccccccccEEcccccccccccccEEEEEEEEEEEccEEEcccHHHEEEccccccEEEEEcccEEEcccHHHHHHHHHHHHHHHcccccccccccccccEccccccccEccEEEEEEccccEEEcccccEEEEEccccEEEEEEEccccccEEEEEEcEcccccc
MVFKVSLVLVLLSISAgsfdavarahdhrrtnsfnsntsslagiklpdhmSFNALLKVkqtkhperidtqekdgdvalddddgddlltlkpskqKVKLHLKHrsknretepkksvsestIRDLTRIQALHRRIIEKKNQNTVSRLKKESQkskkqikpvvtpaaspesyasgvsGQLVATLEsgvslgageyfmdvfvgtppkhyYFILdtgsdlnwiqcvpcydcfeqngphydpkdsssfknischdprchlvsspdpprpcqaenqtcpyfywygdssnttgdFALETFTvnlstptgksefRQVENVMfgcghwnrglfhgaagllglgrgplsfssqlqslyghSFSYClvdrnsdtnvssklifgedkdllnhpnlnftslvsgkenpvdtfYYLQIKSIIvggevlsipdetwrlspegaggtiidsgttlsyfaepAYQIIKQAFMKKvkgyplvkdfpildpcynvsgiekmelpefgiqfadggvwnfpvenyfirldpeDVVCLAILGTPRSALSIIgnyqqqnfhi
MVFKVSLVLVLLSISAGSFDAVARAHdhrrtnsfnsntsslagiKLPDHMSFNALLKvkqtkhperidtqekdgdvaldddDGDDlltlkpskqkvklhlkhrsknretepkksvsestirdlTRIQALHRRiiekknqntvsrlkkesqkskkqikpvvtpaaspesyasgVSGQLVATLESGVSLGAGEYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFKNISCHDPRCHLVSSPDPPRPCQAENQTCPYFYWYGDSSNTTGDFALETFTVNLSTPTGKSEFRQVENVMFGCGHWNRGLFHGAAGLLGLGRGPLSFSSQLQSLYGHSFSYCLVDRNSDTNVSSKLIFgedkdllnhpNLNFTSLVSGKENPVDTFYYLQIKSIIVGGEVLSIPDETWRLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQAFMKKVKGYPLVKDFPILDPCYNVSGIEKMELPEFGIQFADGGVWNFPVENYFIRLDPEDVVCLAILGTPRSALSiignyqqqnfhi
MVFKvslvlvllsisAGSFDAVARAHDHRRtnsfnsntssLAGIKLPDHMSFNALLKVKQTKHPERIDTQEKdgdvalddddgddlltlKPSKQKVKLHLKHRSKNRETEPKKSVSESTIRDLTRIQALHRRIIEKKNQNTVSRLkkesqkskkqikPVVTPAASPESYASGVSGQLVATLESGVSLGAGEYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFKNISCHDPRCHLVSSPDPPRPCQAENQTCPYFYWYGDSSNTTGDFALETFTVNLSTPTGKSEFRQVENVMFGCGHWNrglfhgaagllglgrgplsfsSQLQSLYGHSFSYCLVDRNSDTNVSSKLIFGEDKDLLNHPNLNFTSLVSGKENPVDTFYYLQIKSIIVGGEVLSIPDETWRLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQAFMKKVKGYPLVKDFPILDPCYNVSGIEKMELPEFGIQFADGGVWNFPVENYFIRLDPEDVVCLAILGTPRSALSIIGNYQQQNFHI
**FKVSLVLVLLSISAGSFDAVAR******************************************************************************************************************************************************GQLVATLESGVSLGAGEYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQN*************************************NQTCPYFYWYGDSSNTTGDFALETFTVNLSTPTGKSEFRQVENVMFGCGHWNRGLFHGAAGLLGLGRGPLSFSSQLQSLYGHSFSYCLVDRNSDTNVSSKLIFGEDKDLLNHPNLNFTSLVSGKENPVDTFYYLQIKSIIVGGEVLSIPDETWRLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQAFMKKVKGYPLVKDFPILDPCYNVSGIEKMELPEFGIQFADGGVWNFPVENYFIRLDPEDVVCLAILGTPRSALSIIGNY*******
***KVSLVLVLLSISAGSFDAVA********************IKLPDHMSF***********************************************************************TRIQAL******************************************************GVSLGAGEYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYD***********CH**RCHLVS***********NQTCPYFYWYGDSSNTTGDFALETFTVNLSTPTGKSEFRQVENVMFGCGHWNRGLFHGAAGLLGLGRGPLSFSSQLQSLYGHSFSYCLVD************FGEDKDLLNHPNLNFTSLVSGKENPVDTFYYLQIKSIIVGGEVLSIPDETWRLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQAFMK**********FPILDPCYNVSGIEKMELPEFGIQFADGGVWNFPVENYFIRLDPEDVVCLAILGTPRSALSIIGNYQQQNFHI
MVFKVSLVLVLLSISAGSFDAVARAHDHRRTNSFNSNTSSLAGIKLPDHMSFNALLKVKQTKHPERIDTQEKDGDVALDDDDGDDLLTLKPSKQ*************************IRDLTRIQALHRRIIEKKNQN*********************************SGQLVATLESGVSLGAGEYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFKNISCHDPRCHLVSSPDPPRPCQAENQTCPYFYWYGDSSNTTGDFALETFTVNLSTPTGKSEFRQVENVMFGCGHWNRGLFHGAAGLLGLGRGPLSFSSQLQSLYGHSFSYCLVDRNSDTNVSSKLIFGEDKDLLNHPNLNFTSLVSGKENPVDTFYYLQIKSIIVGGEVLSIPDETWRLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQAFMKKVKGYPLVKDFPILDPCYNVSGIEKMELPEFGIQFADGGVWNFPVENYFIRLDPEDVVCLAILGTPRSALSIIGNYQQQNFHI
*VFKVSLVLVLLSISAGSFDAVARAHDHRRT*****NTSSLAGIKLPDHMSFNA****************************************KVKL**KHRS********KSV***TIRDLTRIQALHRRIIEKKNQNTVSRLKKESQKSKKQIKPVVTPAAS**********QLVATLESGVSLGAGEYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFKNISCHDPRCHLVSSPDPPRPCQAENQTCPYFYWYGDSSNTTGDFALETFTVNLSTPTGKSEFRQVENVMFGCGHWNRGLFHGAAGLLGLGRGPLSFSSQLQSLYGHSFSYCLVDRNSDTNVSSKLIFGEDKDLLNHPNLNFTSLVSGKENPVDTFYYLQIKSIIVGGEVLSIPDETWRLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQAFMKKVKGYPLVKDFPILDPCYNVSGIEKMELPEFGIQFADGGVWNFPVENYFIRLDPEDVVCLAILGTPRSALSIIGNYQQQNFH*
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SSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVFKVSLVLVLLSISAGSFDAVARAHDHRRTNSFNSNTSSLAGIKLPDHMSFNALLKVKQTKHPERIDTQEKDGDVALDDDDGDDLLTLKPSKQKVKLHLKHRSKNRETEPKKSVSESTIRDLTRIQALHRRIIEKKNQNTVSRLKKESQKSKKQIKPVVTPAASPESYASGVSGQLVATLESGVSLGAGEYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFKNISCHDPRCHLVSSPDPPRPCQAENQTCPYFYWYGDSSNTTGDFALETFTVNLSTPTGKSEFRQVENVMFGCGHWNRGLFHGAAGLLGLGRGPLSFSSQLQSLYGHSFSYCLVDRNSDTNVSSKLIFGEDKDLLNHPNLNFTSLVSGKENPVDTFYYLQIKSIIVGGEVLSIPDETWRLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQAFMKKVKGYPLVKDFPILDPCYNVSGIEKMELPEFGIQFADGGVWNFPVENYFIRLDPEDVVCLAILGTPRSALSIIGNYQQQNFHI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query538 2.2.26 [Sep-21-2011]
Q766C2438 Aspartic proteinase nepen N/A no 0.618 0.760 0.391 3e-59
Q9LS40500 Protein ASPARTIC PROTEASE no no 0.626 0.674 0.396 2e-58
Q766C3437 Aspartic proteinase nepen N/A no 0.734 0.903 0.340 3e-58
Q9LHE3470 Protein ASPARTIC PROTEASE no no 0.737 0.844 0.32 1e-52
Q3EBM5447 Probable aspartic proteas no no 0.639 0.769 0.353 9e-46
Q6XBF8437 Aspartic proteinase CDR1 no no 0.611 0.752 0.359 1e-44
Q9S9K4475 Aspartic proteinase-like no no 0.581 0.658 0.277 1e-23
Q9LZL3453 Aspartic proteinase PCS1 no no 0.585 0.695 0.274 2e-21
Q0IU52410 Aspartic proteinase Asp1 no no 0.570 0.748 0.273 2e-16
A2ZC67410 Aspartic proteinase Asp1 N/A no 0.574 0.753 0.263 2e-14
>sp|Q766C2|NEP2_NEPGR Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1 Back     alignment and function desciption
 Score =  229 bits (585), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 141/360 (39%), Positives = 191/360 (53%), Gaps = 27/360 (7%)

Query: 181 LESGVSLGAGEYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSS 240
           +E+ V  G GEY M+V +GTP   +  I+DTGSDL W QC PC  CF Q  P ++P+DSS
Sbjct: 85  IETPVYAGDGEYLMNVAIGTPDSSFSAIMDTGSDLIWTQCEPCTQCFSQPTPIFNPQDSS 144

Query: 241 SFKNISCHDPRCHLVSSPDPPRPCQAENQTCPYFYWYGDSSNTTGDFALETFTVNLSTPT 300
           SF  + C    C  +    P   C   N  C Y Y YGD S T G  A ETFT   S+  
Sbjct: 145 SFSTLPCESQYCQDL----PSETC--NNNECQYTYGYGDGSTTQGYMATETFTFETSS-- 196

Query: 301 GKSEFRQVENVMFGCGHWNRGLFHG-AAGLLGLGRGPLSFSSQLQSLYGHSFSYCLVDRN 359
                  V N+ FGCG  N+G   G  AGL+G+G GPLS  SQL       FSYC+    
Sbjct: 197 -------VPNIAFGCGEDNQGFGQGNGAGLIGMGWGPLSLPSQLGV---GQFSYCMTSYG 246

Query: 360 SDTNVSSKLIFGEDKDLLNHPNLNFTSLVSGKENPVDTFYYLQIKSIIVGGEVLSIPDET 419
           S +   S L  G     +   + + T+L+    NP  T+YY+ ++ I VGG+ L IP  T
Sbjct: 247 SSS--PSTLALGSAASGVPEGSPS-TTLIHSSLNP--TYYYITLQGITVGGDNLGIPSST 301

Query: 420 WRLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQAFMKKVKGYPLVKDFPILDPCYNV-SGI 478
           ++L  +G GG IIDSGTTL+Y  + AY  + QAF  ++    + +    L  C+   S  
Sbjct: 302 FQLQDDGTGGMIIDSGTTLTYLPQDAYNAVAQAFTDQINLPTVDESSSGLSTCFQQPSDG 361

Query: 479 EKMELPEFGIQFADGGVWNFPVENYFIRLDPEDVVCLAILGTPRSALSIIGNYQQQNFHI 538
             +++PE  +QF DGGV N   +N  I    E V+CLA+  + +  +SI GN QQQ   +
Sbjct: 362 STVQVPEISMQF-DGGVLNLGEQNILIS-PAEGVICLAMGSSSQLGISIFGNIQQQETQV 419
Extracellular proteinase found in the pitcher fluid of carnivorous plants. Digest prey for nitrogen uptake.
Nepenthes gracilis (taxid: 150966)
EC: 3EC: .EC: 4EC: .EC: 2EC: 3EC: .EC: 1EC: 2
>sp|Q9LS40|ASPG1_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 1 OS=Arabidopsis thaliana GN=ASPG1 PE=1 SV=1 Back     alignment and function description
>sp|Q766C3|NEP1_NEPGR Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1 Back     alignment and function description
>sp|Q9LHE3|ASPG2_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 2 OS=Arabidopsis thaliana GN=ASPG2 PE=2 SV=1 Back     alignment and function description
>sp|Q3EBM5|ASPR1_ARATH Probable aspartic protease At2g35615 OS=Arabidopsis thaliana GN=At2g35615 PE=3 SV=1 Back     alignment and function description
>sp|Q6XBF8|CDR1_ARATH Aspartic proteinase CDR1 OS=Arabidopsis thaliana GN=CDR1 PE=1 SV=1 Back     alignment and function description
>sp|Q9S9K4|ASPL2_ARATH Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2 Back     alignment and function description
>sp|Q9LZL3|PCS1L_ARATH Aspartic proteinase PCS1 OS=Arabidopsis thaliana GN=PCS1 PE=2 SV=1 Back     alignment and function description
>sp|Q0IU52|ASP1_ORYSJ Aspartic proteinase Asp1 OS=Oryza sativa subsp. japonica GN=ASP1 PE=2 SV=1 Back     alignment and function description
>sp|A2ZC67|ASP1_ORYSI Aspartic proteinase Asp1 OS=Oryza sativa subsp. indica GN=ASP1 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query538
255558694557 basic 7S globulin 2 precursor small subu 0.973 0.940 0.748 0.0
224085379455 predicted protein [Populus trichocarpa] 0.810 0.958 0.834 0.0
356569916560 PREDICTED: aspartic proteinase nepenthes 0.944 0.907 0.724 0.0
357494221 749 60S ribosomal protein L18a [Medicago tru 0.979 0.703 0.706 0.0
356553775559 PREDICTED: aspartic proteinase nepenthes 0.983 0.946 0.695 0.0
356499344561 PREDICTED: aspartic proteinase nepenthes 0.985 0.944 0.685 0.0
449519146 752 PREDICTED: protein ASPARTIC PROTEASE IN 0.828 0.593 0.787 0.0
449453872 757 PREDICTED: LOW QUALITY PROTEIN: protein 0.828 0.589 0.787 0.0
359485189546 PREDICTED: aspartic proteinase nepenthes 0.938 0.924 0.699 0.0
15231625535 aspartyl protease family protein [Arabid 0.947 0.953 0.636 0.0
>gi|255558694|ref|XP_002520371.1| basic 7S globulin 2 precursor small subunit, putative [Ricinus communis] gi|223540418|gb|EEF41987.1| basic 7S globulin 2 precursor small subunit, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  813 bits (2100), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/552 (74%), Positives = 472/552 (85%), Gaps = 28/552 (5%)

Query: 1   MVFKVSLVLVLLSISAGSFDAVARAHDHRRTNSFNSNTSSLAGIKLPDHMSFNA------ 54
           M+ + S +LVL+ I +G+F+A A  + H++  + NSN S+LAGI+LP HMSFNA      
Sbjct: 1   MLSEFSPILVLVLIFSGAFEATAGINHHKK--NVNSNFSTLAGIELPGHMSFNAVSSSST 58

Query: 55  -------LLKVKQTKHPERIDTQEKDGDVALDDDDGDDLLTLKPSKQKVKLHLKHRSKNR 107
                  L K K+ +H + I +QE++ D  LDD         + SKQ +KLHLKHR  NR
Sbjct: 59  VKTTDCSLSKAKKDQHSQSIASQEEEEDWDLDD-------DDQESKQTLKLHLKHRWINR 111

Query: 108 ETEPKKSVSESTIRDLTRIQALHRRIIEKKNQNTVSRLKKESQKSKKQIKPVVTPAASPE 167
           ++  K+S   ST RDLTRIQ LH+RI+EKKNQN +SRL KE  K     +PVV PAASPE
Sbjct: 112 DSTHKESFVASTTRDLTRIQTLHKRILEKKNQNALSRLNKEEPK-----QPVVAPAASPE 166

Query: 168 SY-ASGVSGQLVATLESGVSLGAGEYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDC 226
           SY A+G+SGQL+ATLESGVSLG+GEYFMDVF+GTPP+H+  ILDTGSDLNWIQCVPCYDC
Sbjct: 167 SYPANGLSGQLMATLESGVSLGSGEYFMDVFIGTPPRHFSLILDTGSDLNWIQCVPCYDC 226

Query: 227 FEQNGPHYDPKDSSSFKNISCHDPRCHLVSSPDPPRPCQAENQTCPYFYWYGDSSNTTGD 286
           F QNGP+YDPK+SSSFKNI CHDPRCHLVSSPDPP+PC+AENQTCPYFYWYGDSSNTTGD
Sbjct: 227 FVQNGPYYDPKESSSFKNIGCHDPRCHLVSSPDPPQPCKAENQTCPYFYWYGDSSNTTGD 286

Query: 287 FALETFTVNLSTPTGKSEFRQVENVMFGCGHWNRGLFHGAAGLLGLGRGPLSFSSQLQSL 346
           FALETFTVNL++P GKSEF++VENVMFGCGHWNRGLFHGAAGLLGLGRGPLSFSSQLQSL
Sbjct: 287 FALETFTVNLTSPAGKSEFKRVENVMFGCGHWNRGLFHGAAGLLGLGRGPLSFSSQLQSL 346

Query: 347 YGHSFSYCLVDRNSDTNVSSKLIFGEDKDLLNHPNLNFTSLVSGKENPVDTFYYLQIKSI 406
           YGHSFSYCLVDRNSDTNVSSKLIFGEDKDLLNHP +NFTSLV+GKENPVDTFYY+QIKSI
Sbjct: 347 YGHSFSYCLVDRNSDTNVSSKLIFGEDKDLLNHPEVNFTSLVAGKENPVDTFYYVQIKSI 406

Query: 407 IVGGEVLSIPDETWRLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQAFMKKVKGYPLVKDF 466
           +VGGEVL IP+ETW LSPEGAGGTI+DSGTTLSYFAEP+Y+IIK AF+KKVKGYP++KDF
Sbjct: 407 MVGGEVLKIPEETWHLSPEGAGGTIVDSGTTLSYFAEPSYEIIKDAFVKKVKGYPVIKDF 466

Query: 467 PILDPCYNVSGIEKMELPEFGIQFADGGVWNFPVENYFIRLDPEDVVCLAILGTPRSALS 526
           PILDPCYNVSG+EKMELPEF I F DG VWNFPVENYFI+L+PE++VCLAILGTPRSALS
Sbjct: 467 PILDPCYNVSGVEKMELPEFRILFEDGAVWNFPVENYFIKLEPEEIVCLAILGTPRSALS 526

Query: 527 IIGNYQQQNFHI 538
           IIGNYQQQNFHI
Sbjct: 527 IIGNYQQQNFHI 538

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224085379|ref|XP_002307559.1| predicted protein [Populus trichocarpa] gi|222857008|gb|EEE94555.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356569916|ref|XP_003553140.1| PREDICTED: aspartic proteinase nepenthesin-2-like [Glycine max] Back     alignment and taxonomy information
>gi|357494221|ref|XP_003617399.1| 60S ribosomal protein L18a [Medicago truncatula] gi|355518734|gb|AET00358.1| 60S ribosomal protein L18a [Medicago truncatula] Back     alignment and taxonomy information
>gi|356553775|ref|XP_003545228.1| PREDICTED: aspartic proteinase nepenthesin-1-like [Glycine max] Back     alignment and taxonomy information
>gi|356499344|ref|XP_003518501.1| PREDICTED: aspartic proteinase nepenthesin-2-like [Glycine max] Back     alignment and taxonomy information
>gi|449519146|ref|XP_004166596.1| PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449453872|ref|XP_004144680.1| PREDICTED: LOW QUALITY PROTEIN: protein ASPARTIC PROTEASE IN GUARD CELL 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|359485189|ref|XP_002279141.2| PREDICTED: aspartic proteinase nepenthesin-2-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|15231625|ref|NP_191467.1| aspartyl protease family protein [Arabidopsis thaliana] gi|15983376|gb|AAL11556.1|AF424562_1 AT3g59080/F17J16_130 [Arabidopsis thaliana] gi|7529751|emb|CAB86936.1| putative protein [Arabidopsis thaliana] gi|20466704|gb|AAM20669.1| putative protein [Arabidopsis thaliana] gi|23198236|gb|AAN15645.1| putative protein [Arabidopsis thaliana] gi|332646352|gb|AEE79873.1| aspartyl protease family protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query538
TAIR|locus:2077700535 AT3G59080 "AT3G59080" [Arabido 0.808 0.813 0.680 2.1e-164
TAIR|locus:2045615527 AT2G42980 [Arabidopsis thalian 0.808 0.825 0.624 1.8e-151
TAIR|locus:2031225483 AT1G25510 [Arabidopsis thalian 0.438 0.488 0.337 1.5e-57
TAIR|locus:2102335452 AT3G25700 [Arabidopsis thalian 0.639 0.761 0.381 2.5e-56
TAIR|locus:2076745483 AT3G61820 [Arabidopsis thalian 0.641 0.714 0.368 2.1e-54
TAIR|locus:2095042500 ASPG1 "ASPARTIC PROTEASE IN GU 0.239 0.258 0.433 2.1e-52
TAIR|locus:504955954447 AT2G35615 [Arabidopsis thalian 0.641 0.771 0.347 1.4e-46
TAIR|locus:2056916461 AT2G03200 [Arabidopsis thalian 0.617 0.720 0.334 2.3e-46
TAIR|locus:2206184445 AT1G31450 [Arabidopsis thalian 0.635 0.768 0.335 7.9e-46
TAIR|locus:2017799484 AT1G79720 [Arabidopsis thalian 0.615 0.683 0.324 7.3e-43
TAIR|locus:2077700 AT3G59080 "AT3G59080" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1600 (568.3 bits), Expect = 2.1e-164, P = 2.1e-164
 Identities = 303/445 (68%), Positives = 348/445 (78%)

Query:    96 VKLHLKHR-SKNRETEPKKSVSESTIRDLTRIQALHRRIIEKKNQNTVSRLXXXXXXXXX 154
             VK HLK R +   E     SV E  IRDLTRIQ LH+R++EK NQNTVS+          
Sbjct:    80 VKFHLKRRETTTTEKATTNSVLELQIRDLTRIQTLHKRVLEKNNQNTVSQKQKKNDKEVV 139

Query:   155 XXXPVVTPAASPESYASGVSGQLVATLESGVSLGAGEYFMDVFVGTPPKHYYFILDTGSD 214
                PV   A+S E  A    GQLVATLESG++LG+GEYFMDV VG+PPKH+  ILDTGSD
Sbjct:   140 TTTPV---ASSVEEQA----GQLVATLESGMTLGSGEYFMDVLVGSPPKHFSLILDTGSD 192

Query:   215 LNWIQCVPCYDCFEQNGPHYDPKDSSSFKNISCHDPRCHLVSSPDPPRPCQAENQTCPYF 274
             LNWIQC+PCYDCF+QNG  YDPK S+S+KNI+C+D RC+LVSSPDPP PC+++NQ+CPY+
Sbjct:   193 LNWIQCLPCYDCFQQNGAFYDPKASASYKNITCNDQRCNLVSSPDPPMPCKSDNQSCPYY 252

Query:   275 YWYGDSSNTTGDFALETFTVNLSTPTGKSEFRQVENVMFGCGHWNXXXXXXXXXXXXXXX 334
             YWYGDSSNTTGDFA+ETFTVNL+T  G SE   VEN+MFGCGHWN               
Sbjct:   253 YWYGDSSNTTGDFAVETFTVNLTTNGGSSELYNVENMMFGCGHWNRGLFHGAAGLLGLGR 312

Query:   335 XXXXXXSQLQSLYGHSFSYCLVDRNSDTNVSSKLIFGEDKDLLNHPNLNFTSLVSGKENP 394
                   SQLQSLYGHSFSYCLVDRNSDTNVSSKLIFGEDKDLL+HPNLNFTS V+GKEN 
Sbjct:   313 GPLSFSSQLQSLYGHSFSYCLVDRNSDTNVSSKLIFGEDKDLLSHPNLNFTSFVAGKENL 372

Query:   395 VDTFYYLQIKSIIVGGEVLSIPDETWRLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQAFM 454
             VDTFYY+QIKSI+V GEVL+IP+ETW +S +GAGGTIIDSGTTLSYFAEPAY+ IK    
Sbjct:   373 VDTFYYVQIKSILVAGEVLNIPEETWNISSDGAGGTIIDSGTTLSYFAEPAYEFIKNKIA 432

Query:   455 KKVKG-YPLVKDFPILDPCYNVSGIEKMELPEFGIQFADGGVWNFPVENYFIRLDPEDVV 513
             +K KG YP+ +DFPILDPC+NVSGI  ++LPE GI FADG VWNFP EN FI L+ ED+V
Sbjct:   433 EKAKGKYPVYRDFPILDPCFNVSGIHNVQLPELGIAFADGAVWNFPTENSFIWLN-EDLV 491

Query:   514 CLAILGTPRSALSIIGNYQQQNFHI 538
             CLA+LGTP+SA SIIGNYQQQNFHI
Sbjct:   492 CLAMLGTPKSAFSIIGNYQQQNFHI 516
GO:0003677 "DNA binding" evidence=ISS
GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0006508 "proteolysis" evidence=IEA
GO:0010200 "response to chitin" evidence=RCA
GO:0050832 "defense response to fungus" evidence=RCA
TAIR|locus:2045615 AT2G42980 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031225 AT1G25510 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2102335 AT3G25700 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076745 AT3G61820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2095042 ASPG1 "ASPARTIC PROTEASE IN GUARD CELL 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504955954 AT2G35615 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2056916 AT2G03200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2206184 AT1G31450 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2017799 AT1G79720 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.230.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query538
cd05472299 cd05472, cnd41_like, Chloroplast Nucleoids DNA-bin 2e-92
cd05476265 cd05476, pepsin_A_like_plant, Chroloplast Nucleoid 4e-92
PLN03146431 PLN03146, PLN03146, aspartyl protease family prote 5e-81
cd05471283 cd05471, pepsin_like, Pepsin-like aspartic proteas 8e-47
cd05489362 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibit 2e-20
cd05475273 cd05475, nucellin_like, Nucellins, plant aspartic 2e-20
cd06096326 cd06096, Plasmepsin_5, Plasmepsins are a class of 3e-18
pfam00026316 pfam00026, Asp, Eukaryotic aspartyl protease 5e-14
cd05470109 cd05470, pepsin_retropepsin_like, Cellular and ret 1e-12
cd05478317 cd05478, pepsin_A, Pepsin A, aspartic protease pro 6e-06
PTZ00165482 PTZ00165, PTZ00165, aspartyl protease; Provisional 2e-05
cd05488320 cd05488, Proteinase_A_fungi, Fungal Proteinase A , 4e-05
cd05487326 cd05487, renin_like, Renin stimulates production o 6e-04
cd06097278 cd06097, Aspergillopepsin_like, Aspergillopepsin_l 0.001
cd05477318 cd05477, gastricsin, Gastricsins, asparate proteas 0.001
cd06098317 cd06098, phytepsin, Phytepsin, a plant homolog of 0.003
>gnl|CDD|133139 cd05472, cnd41_like, Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information 
 Score =  284 bits (728), Expect = 2e-92
 Identities = 131/347 (37%), Positives = 158/347 (45%), Gaps = 67/347 (19%)

Query: 191 EYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFKNISCHDP 250
           EY + V +GTP +    I+DTGSDL W+QC PC                           
Sbjct: 1   EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC--------------------------- 33

Query: 251 RCHLVSSPDPPRPCQAENQTCPYFYWYGDSSNTTGDFALETFTVNLSTPTGKSEFRQVEN 310
                               C Y   YGD S TTGD A +T T+  S          V  
Sbjct: 34  --------------------CLYQVSYGDGSYTTGDLATDTLTLGSSDV--------VPG 65

Query: 311 VMFGCGHWNRGLFHGAAGLLGLGRGPLSFSSQLQSLYGHSFSYCLVDRNSDTNVSSKLIF 370
             FGCGH N GLF GAAGLLGLGRG LS  SQ  S YG  FSYCL DR+S +  S  L F
Sbjct: 66  FAFGCGHDNEGLFGGAAGLLGLGRGKLSLPSQTASSYGGVFSYCLPDRSSSS--SGYLSF 123

Query: 371 GEDKDLLNHPNLNFTSLVSGKENPVDTFYYLQIKSIIVGGEVLSIPDETWRLSPEGAGGT 430
           G           +FT ++S    P  TFYY+ +  I VGG  L IP  ++     GAGG 
Sbjct: 124 G--AAASVPAGASFTPMLSNPRVP--TFYYVGLTGISVGGRRLPIPPASF-----GAGGV 174

Query: 431 IIDSGTTLSYFAEPAYQIIKQAFMKKVKGYPLVKDFPILDPCYNVSGIEKMELPEFGIQF 490
           IIDSGT ++     AY  ++ AF   +  YP    F ILD CY++SG   + +P   + F
Sbjct: 175 IIDSGTVITRLPPSAYAALRDAFRAAMAAYPRAPGFSILDTCYDLSGFRSVSVPTVSLHF 234

Query: 491 ADGGVWNFPVENYFIRLDPEDVVCLAILGTPR-SALSIIGNYQQQNF 536
             G             +D    VCLA  GT     LSIIGN QQQ F
Sbjct: 235 QGGADVELDASGVLYPVDDSSQVCLAFAGTSDDGGLSIIGNVQQQTF 281

Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 299
>gnl|CDD|133143 cd05476, pepsin_A_like_plant, Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information
>gnl|CDD|178691 PLN03146, PLN03146, aspartyl protease family protein; Provisional Back     alignment and domain information
>gnl|CDD|133138 cd05471, pepsin_like, Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>gnl|CDD|133156 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>gnl|CDD|133142 cd05475, nucellin_like, Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>gnl|CDD|133160 cd06096, Plasmepsin_5, Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>gnl|CDD|215663 pfam00026, Asp, Eukaryotic aspartyl protease Back     alignment and domain information
>gnl|CDD|133137 cd05470, pepsin_retropepsin_like, Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>gnl|CDD|133145 cd05478, pepsin_A, Pepsin A, aspartic protease produced in gastric mucosa of mammals Back     alignment and domain information
>gnl|CDD|240300 PTZ00165, PTZ00165, aspartyl protease; Provisional Back     alignment and domain information
>gnl|CDD|133155 cd05488, Proteinase_A_fungi, Fungal Proteinase A , aspartic proteinase superfamily Back     alignment and domain information
>gnl|CDD|133154 cd05487, renin_like, Renin stimulates production of angiotensin and thus affects blood pressure Back     alignment and domain information
>gnl|CDD|133161 cd06097, Aspergillopepsin_like, Aspergillopepsin_like, aspartic proteases of fungal origin Back     alignment and domain information
>gnl|CDD|133144 cd05477, gastricsin, Gastricsins, asparate proteases produced in gastric mucosa Back     alignment and domain information
>gnl|CDD|133162 cd06098, phytepsin, Phytepsin, a plant homolog of mammalian lysosomal pepsins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 538
PLN03146431 aspartyl protease family protein; Provisional 100.0
KOG1339398 consensus Aspartyl protease [Posttranslational mod 100.0
cd05489362 xylanase_inhibitor_I_like TAXI-I inhibits degradat 100.0
cd05472299 cnd41_like Chloroplast Nucleoids DNA-binding Prote 100.0
cd05478317 pepsin_A Pepsin A, aspartic protease produced in g 100.0
cd05490325 Cathepsin_D2 Cathepsin_D2, pepsin family of protei 100.0
cd06096326 Plasmepsin_5 Plasmepsins are a class of aspartic p 100.0
cd05486316 Cathespin_E Cathepsin E, non-lysosomal aspartic pr 100.0
cd05477318 gastricsin Gastricsins, asparate proteases produce 100.0
cd05488320 Proteinase_A_fungi Fungal Proteinase A , aspartic 100.0
cd05485329 Cathepsin_D_like Cathepsin_D_like, pepsin family o 100.0
cd06098317 phytepsin Phytepsin, a plant homolog of mammalian 100.0
PTZ00165482 aspartyl protease; Provisional 100.0
cd05487326 renin_like Renin stimulates production of angioten 100.0
cd05473364 beta_secretase_like Beta-secretase, aspartic-acid 100.0
PTZ00147453 plasmepsin-1; Provisional 100.0
cd05475273 nucellin_like Nucellins, plant aspartic proteases 100.0
PTZ00013450 plasmepsin 4 (PM4); Provisional 100.0
cd05476265 pepsin_A_like_plant Chroloplast Nucleoids DNA-bind 100.0
cd06097278 Aspergillopepsin_like Aspergillopepsin_like, aspar 100.0
cd05474295 SAP_like SAPs, pepsin-like proteinases secreted fr 100.0
cd05471283 pepsin_like Pepsin-like aspartic proteases, biloba 100.0
PF00026317 Asp: Eukaryotic aspartyl protease The Prosite entr 100.0
PF14543164 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 100.0
PF14541161 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 99.91
cd05470109 pepsin_retropepsin_like Cellular and retroviral pe 99.89
cd0548396 retropepsin_like_bacteria Bacterial aspartate prot 97.63
PF1365090 Asp_protease_2: Aspartyl protease 94.23
TIGR02281121 clan_AA_DTGA clan AA aspartic protease, TIGR02281 93.9
cd05479124 RP_DDI RP_DDI; retropepsin-like domain of DNA dama 87.49
cd0548491 retropepsin_like_LTR_2 Retropepsins_like_LTR, peps 86.29
>PLN03146 aspartyl protease family protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=9e-68  Score=568.25  Aligned_cols=382  Identities=36%  Similarity=0.660  Sum_probs=306.1

Q ss_pred             ceeEEEeccCCCCCCCC----CCCChhHHHHhHHHHHHHHHHHHhhhccccchhhhhhhhcccccccCCccCCCCCCCCc
Q 041228           94 QKVKLHLKHRSKNRETE----PKKSVSESTIRDLTRIQALHRRIIEKKNQNTVSRLKKESQKSKKQIKPVVTPAASPESY  169 (538)
Q Consensus        94 ~~~~l~~~~~~~~~~~~----~~~~~~~~l~rD~~R~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (538)
                      -+++|.|+|.+|+|...    ..+.+.++++||.+|+++|.+|..     .                       .     
T Consensus        25 ~~~~l~h~~~~~sp~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-----~-----------------------~-----   71 (431)
T PLN03146         25 FTVDLIHRDSPKSPFYNPSETPSQRLRNAFRRSISRVNHFRPTDA-----S-----------------------P-----   71 (431)
T ss_pred             eEEEEEeCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHhhccc-----c-----------------------C-----
Confidence            34455555557887321    225578889999999888754320     0                       0     


Q ss_pred             cCCcccceeeeeeeccccCCeeEEEEEEeCCCCceeeEEEecCCCceeEECCCCCCCcCCCCCCCCCCCCCcccccccCC
Q 041228          170 ASGVSGQLVATLESGVSLGAGEYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFKNISCHD  249 (538)
Q Consensus       170 ~~~~~~~~~~pl~~g~~~g~~~Y~v~I~IGTP~q~~~li~DTGS~~tWV~c~~C~~C~~q~~~~FdPs~SSTy~~~~C~s  249 (538)
                               .|+.++...+.++|+++|.||||+|++.|+|||||+++||||.+|..|+.|.++.|||++|+||+.++|++
T Consensus        72 ---------~~~~~~~~~~~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~~C~~~~~~~fdps~SST~~~~~C~s  142 (431)
T PLN03146         72 ---------NDPQSDLISNGGEYLMNISIGTPPVPILAIADTGSDLIWTQCKPCDDCYKQVSPLFDPKKSSTYKDVSCDS  142 (431)
T ss_pred             ---------CccccCcccCCccEEEEEEcCCCCceEEEEECCCCCcceEcCCCCcccccCCCCcccCCCCCCCcccCCCC
Confidence                     12222334578899999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCCCCCCCCCCceeeEEEeCCCCceEEEEEEEEEEEcccCCCCCccCeeEeeeEEEEEEeccCCcc-Ccce
Q 041228          250 PRCHLVSSPDPPRPCQAENQTCPYFYWYGDSSNTTGDFALETFTVNLSTPTGKSEFRQVENVMFGCGHWNRGLFH-GAAG  328 (538)
Q Consensus       250 ~~C~~~~~~~~~~~C~~~~~~c~y~v~YgdGs~~~G~~~~Dtltl~~~s~~g~~~~~~v~~~~FGc~~~~~g~f~-~~dG  328 (538)
                      +.|+.+..   ...|..+ +.|.|.+.|+||+.+.|++++|+|+|+...  +  ....++++.|||++.+.|.|. ..+|
T Consensus       143 ~~C~~~~~---~~~c~~~-~~c~y~i~Ygdgs~~~G~l~~Dtltlg~~~--~--~~~~v~~~~FGc~~~~~g~f~~~~~G  214 (431)
T PLN03146        143 SQCQALGN---QASCSDE-NTCTYSYSYGDGSFTKGNLAVETLTIGSTS--G--RPVSFPGIVFGCGHNNGGTFDEKGSG  214 (431)
T ss_pred             cccccCCC---CCCCCCC-CCCeeEEEeCCCCceeeEEEEEEEEeccCC--C--CcceeCCEEEeCCCCCCCCccCCCce
Confidence            99987643   2347543 469999999999988999999999997421  1  124688999999999988775 5799


Q ss_pred             eecccCCCCChhhHHhhhccCceEEEecCCCCCCCCCcceEecCCCCCCCC-CCceeEeeccCCCCCccceEEEEEeeEE
Q 041228          329 LLGLGRGPLSFSSQLQSLYGHSFSYCLVDRNSDTNVSSKLIFGEDKDLLNH-PNLNFTSLVSGKENPVDTFYYLQIKSII  407 (538)
Q Consensus       329 ILGLg~~~lSl~sQl~~~~~~~FSycL~~~~~~~~~~G~LtfGg~d~~~~~-g~l~~tPl~~~~~~~~~~~y~V~L~gIs  407 (538)
                      |||||++++|+++|+...++++|||||++..++....|.|+||+.  .++. ..+.||||+.+.   .+.||+|.|++|+
T Consensus       215 ilGLG~~~~Sl~sql~~~~~~~FSycL~~~~~~~~~~g~l~fG~~--~~~~~~~~~~tPl~~~~---~~~~y~V~L~gIs  289 (431)
T PLN03146        215 IVGLGGGPLSLISQLGSSIGGKFSYCLVPLSSDSNGTSKINFGTN--AIVSGSGVVSTPLVSKD---PDTFYYLTLEAIS  289 (431)
T ss_pred             eEecCCCCccHHHHhhHhhCCcEEEECCCCCCCCCCcceEEeCCc--cccCCCCceEcccccCC---CCCeEEEeEEEEE
Confidence            999999999999999877778999999865443334699999985  2333 458999998542   2579999999999


Q ss_pred             eCCeeeccCCcccccCCCCCCcEEEeccccCccCCHHHHHHHHHHHHHHhcCCcCCCCCCceecccCCCCCcccccceEE
Q 041228          408 VGGEVLSIPDETWRLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQAFMKKVKGYPLVKDFPILDPCYNVSGIEKMELPEFG  487 (538)
Q Consensus       408 VgG~~l~i~~~~f~~~~~~~~~aIIDSGTs~t~LP~~~y~al~~af~~~~~~~~~~~~~~~ld~C~~~s~~~~~~lP~I~  487 (538)
                      |||+.+++++..|.  ..+.+++||||||++|+||+++|++|+++|.++++..+.......+++||+...  ...+|+|+
T Consensus       290 Vgg~~l~~~~~~~~--~~~~g~~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~--~~~~P~i~  365 (431)
T PLN03146        290 VGSKKLPYTGSSKN--GVEEGNIIIDSGTTLTLLPSDFYSELESAVEEAIGGERVSDPQGLLSLCYSSTS--DIKLPIIT  365 (431)
T ss_pred             ECCEECcCCccccc--cCCCCcEEEeCCccceecCHHHHHHHHHHHHHHhccccCCCCCCCCCccccCCC--CCCCCeEE
Confidence            99999999887764  234568999999999999999999999999999976444344445689998643  25689999


Q ss_pred             EEEecCeEEEeCCCccEEEecCCCcEEEEEEecCCCCceEecHhhhceeeC
Q 041228          488 IQFADGGVWNFPVENYFIRLDPEDVVCLAILGTPRSALSIIGNYQQQNFHI  538 (538)
Q Consensus       488 f~F~gg~~~~lp~~~yl~~~~~~~~~Claf~~~~~~~~~IiGn~~qq~~~V  538 (538)
                      |+| +|+++.|++++|+++.. .+.+|++|+..  .+.|||||+|||+++|
T Consensus       366 ~~F-~Ga~~~l~~~~~~~~~~-~~~~Cl~~~~~--~~~~IlG~~~q~~~~v  412 (431)
T PLN03146        366 AHF-TGADVKLQPLNTFVKVS-EDLVCFAMIPT--SSIAIFGNLAQMNFLV  412 (431)
T ss_pred             EEE-CCCeeecCcceeEEEcC-CCcEEEEEecC--CCceEECeeeEeeEEE
Confidence            999 58999999999999876 56789999865  3469999999999986

>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals Back     alignment and domain information
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases Back     alignment and domain information
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease Back     alignment and domain information
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa Back     alignment and domain information
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily Back     alignment and domain information
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases Back     alignment and domain information
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins Back     alignment and domain information
>PTZ00165 aspartyl protease; Provisional Back     alignment and domain information
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure Back     alignment and domain information
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease Back     alignment and domain information
>PTZ00147 plasmepsin-1; Provisional Back     alignment and domain information
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>PTZ00013 plasmepsin 4 (PM4); Provisional Back     alignment and domain information
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin Back     alignment and domain information
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077 Back     alignment and domain information
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A Back     alignment and domain information
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A Back     alignment and domain information
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family Back     alignment and domain information
>PF13650 Asp_protease_2: Aspartyl protease Back     alignment and domain information
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family Back     alignment and domain information
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein Back     alignment and domain information
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query538
3vla_A413 Crystal Structure Of Edgp Length = 413 6e-08
3vlb_A413 Crystal Structure Of Xeg-Edgp Length = 413 6e-08
4aa9_A320 Camel Chymosin At 1.6a Resolution Length = 320 5e-06
1czi_E323 Chymosin Complex With The Inhibitor Cp-113972 Lengt 2e-05
3cms_A323 Engineering Enzyme Sub-Site Specificity: Preparatio 2e-05
1uh7_A325 Crystal Structure Of Rhizopuspepsin At Ph 4.6 Lengt 6e-04
1pso_E326 The Crystal Structure Of Human Pepsin And Its Compl 7e-04
1flh_A326 Crystal Structure Of Human Uropepsin At 2.45 A Reso 7e-04
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp Length = 413 Back     alignment and structure 
Iteration: 1

 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 81/383 (21%), Positives = 146/383 (38%), Gaps = 60/383 (15%)
Query: 191 EYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFKNISCHDP 250
           +Y   +   TP      ++D G    W+ C       +QN        SS+++ + C   
Sbjct: 21  QYVTTINQRTPLVSENLVVDLGGRFLWVDC-------DQN------YVSSTYRPVRCRTS 67
Query: 251 RCHLVSSP------DPPRPCQAENQTCPYFYWYGDSSNTTGDFALETFTVNLSTPTGKSE 304
           +C L  S       + PRP    N TC  F      +  TG    E   V++ +  G S 
Sbjct: 68  QCSLSGSIACGDCFNGPRP-GCNNNTCGVFPENPVINTATGGEVAEDV-VSVESTDGSSS 125
Query: 305 FR--QVENVMFGCGHWNXXXXXXXXXXXXXXXXXXXXX--SQLQSLYG--HSFSYCLVDR 358
            R   V   +F C   +                       SQ  S +     F+ CL   
Sbjct: 126 GRVVTVPRFIFSCAPTSLLQNLASGVVGMAGLGRTRIALPSQFASAFSFKRKFAMCL--- 182
Query: 359 NSDTNVSSKLIFGED------KDLLNHPNLNFTSLVSGKENPVDTF-----------YYL 401
           +  T+ +S +IFG D        +++   L +T L++   NPV T            Y++
Sbjct: 183 SGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLT---NPVSTSATSTQGEPSVEYFI 239
Query: 402 QIKSIIVGGEVLSIPDETWRLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQAFMKK--VKG 459
            +KSI +  +++++      +S  G GGT I +    +      Y+ + +AF+K+   + 
Sbjct: 240 GVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARN 299
Query: 460 YPLVKDFPILDPCYNVSGIEKMEL----PEFGIQF-ADGGVWNFPVENYFIRLDPEDVVC 514
              V        C++   I    L    P   +   ++  VW     N  + ++ ++VVC
Sbjct: 300 ITRVASVAPFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYIN-DNVVC 358
Query: 515 LAIL--GTPRSALSIIGNYQQQN 535
           L ++  G+      +IG +Q ++
Sbjct: 359 LGVVDGGSNLRTSIVIGGHQLED 381
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp Length = 413 Back     alignment and structure
>pdb|4AA9|A Chain A, Camel Chymosin At 1.6a Resolution Length = 320 Back     alignment and structure
>pdb|1CZI|E Chain E, Chymosin Complex With The Inhibitor Cp-113972 Length = 323 Back     alignment and structure
>pdb|3CMS|A Chain A, Engineering Enzyme Sub-Site Specificity: Preparation, Kinetic Characterization And X-Ray Analysis At 2.0-Angstroms Resolution Of Val111phe Site-Mutated Calf Chymosin Length = 323 Back     alignment and structure
>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6 Length = 325 Back     alignment and structure
>pdb|1PSO|E Chain E, The Crystal Structure Of Human Pepsin And Its Complex With Pepstatin Length = 326 Back     alignment and structure
>pdb|1FLH|A Chain A, Crystal Structure Of Human Uropepsin At 2.45 A Resolution Length = 326 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query538
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 3e-98
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 2e-87
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 2e-85
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 3e-18
3lpj_A455 Beta-secretase 1; alzheimer'S, aspartyl protease, 7e-18
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 1e-17
2ewy_A383 Beta-secretase 2; BACE2, aspartic protease, hydrol 2e-17
2qp8_A395 Beta-secretase 1; BACE1, protease, alternative spl 7e-17
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 5e-16
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 9e-16
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 1e-15
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 2e-15
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 9e-15
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 9e-14
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 9e-14
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 9e-14
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 1e-13
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 1e-13
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 4e-13
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 1e-12
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 2e-12
1qdm_A 478 Prophytepsin; aspartic proteinases, saposin-like d 3e-12
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 4e-12
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 5e-12
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 6e-12
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 2e-11
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 3e-11
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 4e-11
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 4e-11
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 2e-10
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 2e-10
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 6e-09
1lya_A97 Cathepsin D; lysosomal aspartic protease; HET: NAG 3e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Length = 403 Back     alignment and structure
 Score =  302 bits (774), Expect = 3e-98
 Identities = 62/362 (17%), Positives = 120/362 (33%), Gaps = 24/362 (6%)

Query: 190 GEYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFKNISCHD 249
           G ++ ++   TP      ++D   +  W+ C   Y       P       S      C  
Sbjct: 21  GLHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQQYSSKTYQAPFCHSTQCSRANTHQCLS 80

Query: 250 PRCHLVSSPDPPRPCQAENQTCPYFYWYGDSSNTTGDFALETFTVNLSTPTGK--SEFRQ 307
                       RP   +N                G+   +   ++ +  + +       
Sbjct: 81  CPA-------ASRPGCHKNTCGLMSTNPITQQTGLGELGEDVLAIHATQGSTQQLGPLVT 133

Query: 308 VENVMFGCGHW---NRGLFHGAAGLLGLGRGPLSFSSQLQSLYG--HSFSYCLVDRNSDT 362
           V   +F C       +GL     G+ GLG  P+S  +QL S +G    F+ CL    +  
Sbjct: 134 VPQFLFSCAPSFLVQKGLPRNTQGVAGLGHAPISLPNQLASHFGLQRQFTTCLSRYPTS- 192

Query: 363 NVSSKLIFGEDKDLLNHPN---LNFTSLVSGKENPVDTFYYLQIKSIIVGGE-VLSIPDE 418
                +IFG+  + +       +      +     +   Y +++ SI +    V  +   
Sbjct: 193 --KGAIIFGDAPNNMRQFQNQDIFHDLAFTPLTITLQGEYNVRVNSIRINQHSVFPLNKI 250

Query: 419 TWRLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQAFMKKVKGYPLVKDFPILDPCYNVSGI 478
           +  +    +GGT+I + T      +  YQ   Q F +++     VK       C+N + I
Sbjct: 251 SSTIVGSTSGGTMISTSTPHMVLQQSVYQAFTQVFAQQLPKQAQVKSVAPFGLCFNSNKI 310

Query: 479 EKMELPEFGIQFADGGVWNFPVENYFIRLDPEDVVCLAILGTPRSA--LSIIGNYQQQNF 536
                 +  +   +G VW    E+  ++     V CL ++           +G  Q +  
Sbjct: 311 NAYPSVDLVMDKPNGPVWRISGEDLMVQAQ-PGVTCLGVMNGGMQPRAEITLGARQLEEN 369

Query: 537 HI 538
            +
Sbjct: 370 LV 371
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Length = 413 Back     alignment and structure
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Length = 381 Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Length = 361 Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Length = 455 Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Length = 342 Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Length = 383 Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Length = 395 Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Length = 342 Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Length = 334 Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Length = 351 Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Length = 329 Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} PDB: 3tne_A* Length = 339 Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Length = 324 Back     alignment and structure
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Length = 370 Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Length = 329 Back     alignment and structure
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Length = 383 Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Length = 341 Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Length = 329 Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Length = 323 Back     alignment and structure
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Length = 239 Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Length = 478 Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Length = 329 Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Length = 323 Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Length = 325 Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Length = 325 Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Length = 453 Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Length = 375 Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Length = 340 Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Length = 451 Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Length = 330 Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Length = 323 Back     alignment and structure
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A* Length = 97 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query538
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 100.0
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 100.0
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 100.0
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 100.0
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 100.0
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 100.0
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 100.0
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 100.0
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 100.0
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 100.0
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 100.0
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 100.0
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 100.0
4aa9_A320 Chymosin; hydrolase, aspartic peptidase, rennet; H 100.0
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 100.0
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 100.0
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 100.0
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 100.0
2ewy_A383 Beta-secretase 2; BACE2, aspartic protease, hydrol 100.0
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 100.0
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 100.0
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 100.0
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 100.0
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 100.0
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 100.0
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 100.0
2qp8_A395 Beta-secretase 1; BACE1, protease, alternative spl 100.0
1qdm_A478 Prophytepsin; aspartic proteinases, saposin-like d 100.0
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 100.0
3vf3_A402 Beta-secretase 1; structure-based drug design, hyd 100.0
3lpj_A455 Beta-secretase 1; alzheimer'S, aspartyl protease, 100.0
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 100.0
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 100.0
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 100.0
1lya_B241 Cathepsin D; lysosomal aspartic protease; HET: NAG 99.97
1lya_A97 Cathepsin D; lysosomal aspartic protease; HET: NAG 99.85
1b5f_B87 Protein (cardosin A); hydrolase, aspartic proteina 98.78
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Back     alignment and structure
Probab=100.00  E-value=2.4e-59  Score=499.30  Aligned_cols=341  Identities=23%  Similarity=0.454  Sum_probs=278.1

Q ss_pred             cceeeeeeeccccCCeeEEEEEEeCCCCceeeEEEecCCCceeEECCCCCCCcCCCCCCCCCCCCCcccccccCCccCCC
Q 041228          175 GQLVATLESGVSLGAGEYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFKNISCHDPRCHL  254 (538)
Q Consensus       175 ~~~~~pl~~g~~~g~~~Y~v~I~IGTP~q~~~li~DTGS~~tWV~c~~C~~C~~q~~~~FdPs~SSTy~~~~C~s~~C~~  254 (538)
                      ..+..|+...  ..+++|+++|.||||+|+|.|+|||||+++||||.+|             .+|+||+++.|.++.|..
T Consensus         7 ~~~~~pv~~d--~~~~~Y~~~i~iGTPpq~~~v~~DTGS~~lWv~c~~c-------------~~Sst~~~v~C~s~~C~~   71 (413)
T 3vla_A            7 SALVVPVKKD--ASTLQYVTTINQRTPLVSENLVVDLGGRFLWVDCDQN-------------YVSSTYRPVRCRTSQCSL   71 (413)
T ss_dssp             SEEEEEEEEC--TTTCCEEEEEEETTTTEEEEEEEETTCSSEEEECSSS-------------CCCTTCEECBTTSHHHHH
T ss_pred             ccEEEEeeec--CCCCeEEEEEEcCCCCcceEEEEeCCChhhhcccCCC-------------CCCCCcCccCCCcccccc
Confidence            4577898875  4789999999999999999999999999999999976             279999999999999987


Q ss_pred             CCCCCC-------CCCCCCCCCceeeEEEe-CCCCceEEEEEEEEEEEcccCCCCCc--cCeeEeeeEEEEEEec--cCC
Q 041228          255 VSSPDP-------PRPCQAENQTCPYFYWY-GDSSNTTGDFALETFTVNLSTPTGKS--EFRQVENVMFGCGHWN--RGL  322 (538)
Q Consensus       255 ~~~~~~-------~~~C~~~~~~c~y~v~Y-gdGs~~~G~~~~Dtltl~~~s~~g~~--~~~~v~~~~FGc~~~~--~g~  322 (538)
                      +.....       ...|.  ++.|.|.+.| +||+.+.|++++|+|+|+.+.  |..  ....++++.|||++.+  .++
T Consensus        72 ~~~~~~~~c~s~~~~~c~--~~~c~~~i~Y~~d~~~~~G~l~~Dtv~l~~~~--g~~~~~~~~v~~~~FGc~~~~~~~g~  147 (413)
T 3vla_A           72 SGSIACGDCFNGPRPGCN--NNTCGVFPENPVINTATGGEVAEDVVSVESTD--GSSSGRVVTVPRFIFSCAPTSLLQNL  147 (413)
T ss_dssp             TTCCEEECCSSCCBTTBC--SSEEEECCEETTTTEECCEEEEEEEEEEEEEC--SSBEEEEEEEEEEEEEEECGGGGTTS
T ss_pred             cccCCCcccccCCCCCCC--CCcCcceeecCcCCceeeeEEEEEEEEecccC--CCCcccceeeCCEEEECcccccccCc
Confidence            643211       12454  2469999999 588889999999999997421  111  1357889999999986  566


Q ss_pred             ccCcceeecccCCCCChhhHHhh--hccCceEEEecCCCCCCCCCcceEecCCCCCC-----CCCC-ceeEeeccCCCCC
Q 041228          323 FHGAAGLLGLGRGPLSFSSQLQS--LYGHSFSYCLVDRNSDTNVSSKLIFGEDKDLL-----NHPN-LNFTSLVSGKENP  394 (538)
Q Consensus       323 f~~~dGILGLg~~~lSl~sQl~~--~~~~~FSycL~~~~~~~~~~G~LtfGg~d~~~-----~~g~-l~~tPl~~~~~~~  394 (538)
                      +.+++||||||++.+|+++||..  .+.++|||||++.   ....|+|+||+.+..+     +.++ +.||||+.++..+
T Consensus       148 ~~~~dGIlGLg~~~lSl~sql~~~~~i~~~FS~cL~~~---~~~~G~l~fGg~~~~~~p~~~~~g~~l~~tPl~~~~~~~  224 (413)
T 3vla_A          148 ASGVVGMAGLGRTRIALPSQFASAFSFKRKFAMCLSGS---TSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVST  224 (413)
T ss_dssp             CTTCCEEEECSSSSSSHHHHHHHHHTCCSEEEEECCSC---SSSCEEEEEESCCEEETTTEEECTTTSEEEECBCCSSCC
T ss_pred             ccccccccccCCCCcchHHHHhhhcCCCceEEEeCCCC---CCCceEEEECCCcccccccccccCCceeEeecccCCccc
Confidence            77889999999999999999944  4568999999863   2246999999987643     5677 9999999754211


Q ss_pred             --------ccceEEEEEeeEEeCCeeeccCCcccccCCCCCCcEEEeccccCccCCHHHHHHHHHHHHHHhc--CCcCCC
Q 041228          395 --------VDTFYYLQIKSIIVGGEVLSIPDETWRLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQAFMKKVK--GYPLVK  464 (538)
Q Consensus       395 --------~~~~y~V~L~gIsVgG~~l~i~~~~f~~~~~~~~~aIIDSGTs~t~LP~~~y~al~~af~~~~~--~~~~~~  464 (538)
                              ...||+|+|++|+|||+.+.++++.|.++..+++++||||||++|+||+++|++|+++|.+++.  .++...
T Consensus       225 ~~~~~~~~~~~~y~V~l~~IsVgg~~l~~~~~~~~~~~~g~~~aIiDSGTslt~lp~~~y~~l~~a~~~~~~~~~~~~~~  304 (413)
T 3vla_A          225 SATSTQGEPSVEYFIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRVA  304 (413)
T ss_dssp             SSSCCTTCCCCSCEECCCEEEETTEEECCCGGGTSBCTTSCBCEEECSSSSSEEEEHHHHHHHHHHHHHHHHHTTCCEEC
T ss_pred             cccccccCCCceEEEEEEEEEECCEEccCCchhcccccCCCCCEEEECCCCcEEcCHHHHHHHHHHHHHHhcccCCCcCC
Confidence                    1379999999999999999999988887766778999999999999999999999999999885  444444


Q ss_pred             CCCceecccCCCCCcc----cccceEEEEEec-CeEEEeCCCccEEEecCCCcEEEEEEecCC--CCceEecHhhhceee
Q 041228          465 DFPILDPCYNVSGIEK----MELPEFGIQFAD-GGVWNFPVENYFIRLDPEDVVCLAILGTPR--SALSIIGNYQQQNFH  537 (538)
Q Consensus       465 ~~~~ld~C~~~s~~~~----~~lP~I~f~F~g-g~~~~lp~~~yl~~~~~~~~~Claf~~~~~--~~~~IiGn~~qq~~~  537 (538)
                      +...+++||+.+....    ..+|+|+|+|+| ++.|+|++++|+++.+ .+..|++|+....  ...||||++|||+++
T Consensus       305 ~~~~~~~C~~~~~~~~~~~~~~lP~i~f~f~g~~~~~~l~~~~y~~~~~-~~~~Cl~~~~~~~~~~~~~IlGd~fl~~~~  383 (413)
T 3vla_A          305 SVAPFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYIN-DNVVCLGVVDGGSNLRTSIVIGGHQLEDNL  383 (413)
T ss_dssp             CCTTCSCEEECTTCCEETTEECCCCEEEECSSTTCEEEECHHHHEEEEE-TTEEEECEEEEESSCSSSEEECHHHHTTEE
T ss_pred             CCCCCcceeccCCccccccccCCCcEEEEEcCCcEEEEeCccceEEEeC-CCcEEEEEEecCCCcccceeEehhhhcCeE
Confidence            4445689999875422    479999999965 4999999999999876 5678999887642  368999999999998


Q ss_pred             C
Q 041228          538 I  538 (538)
Q Consensus       538 V  538 (538)
                      |
T Consensus       384 v  384 (413)
T 3vla_A          384 V  384 (413)
T ss_dssp             E
T ss_pred             E
Confidence            6
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Back     alignment and structure
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Back     alignment and structure
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Back     alignment and structure
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Back     alignment and structure
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A* Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Back     alignment and structure
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ... Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Back     alignment and structure
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Back     alignment and structure
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A* Back     alignment and structure
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 538
d1t6ex_381 b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Tr 1e-51
d1dpja_329 b.50.1.2 (A:) Acid protease {Baker's yeast (Saccha 4e-33
d3cmsa_323 b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos 7e-32
g1lya.1338 b.50.1.2 (A:,B:) Cathepsin D {Human (Homo sapiens) 9e-32
d2qp8a1387 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Hum 4e-31
d1j71a_334 b.50.1.2 (A:) Acid protease {Yeast (Candida tropic 3e-30
d2apra_325 b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus 4e-29
d1miqa_373 b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading e 1e-28
d1eaga_342 b.50.1.2 (A:) Acid protease {Yeast (Candida albica 1e-28
g1b5f.1326 b.50.1.2 (A:,B:) Plant acid proteinase, phytepsin 3e-28
d3psga_370 b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxI 3e-28
d1qdma2337 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase 4e-28
d1mppa_357 b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840] 1e-27
d1bxoa_323 b.50.1.2 (A:) Acid protease {Fungus (Penicillium j 2e-27
d1oewa_330 b.50.1.2 (A:) Endothiapepsin {Chestnut blight fung 2e-27
d1smra_335 b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mu 3e-26
d1izea_323 b.50.1.2 (A:) Acid protease {Fungus (Aspergillus o 4e-26
g1htr.1372 b.50.1.2 (P:,B:) Pepsin(ogen) {Human (Homo sapiens 5e-26
d1am5a_324 b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus mo 6e-26
d2bjua1329 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrad 1e-24
d1hrna_337 b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Ho 2e-22
d1wkra_340 b.50.1.2 (A:) Acid protease {Irpex lacteus (Polypo 5e-20
d2fzta178 a.46.3.1 (A:1-78) Hypothetical protein TM0693 {The 4e-04
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 381 Back     information, alignment and structure

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Xylanase inhibitor TAXI-I
species: Wheat (Triticum aestivum) [TaxId: 4565]

 Score =  178 bits (452), Expect = 1e-51
 Identities = 63/370 (17%), Positives = 119/370 (32%), Gaps = 46/370 (12%)

Query: 190 GEYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFKNISCHD 249
             Y +    G        +LD    L W  C       E          ++++    C  
Sbjct: 14  SLYTIPFHDGAS-----LVLDVAGPLVWSTCDGGQPPAEIPCSSPTCLLANAYPAPGCPA 68

Query: 250 PRCHLVSSPDPPRPCQAENQTCPYFYWYGDSSNTTGDFALETFTVNLSTPTGKSEFRQVE 309
           P C    S    +PC        Y Y     +   G  +   F  N +  + K   +   
Sbjct: 69  PSC---GSDKHDKPC------TAYPYNPVSGACAAGSLSHTRFVANTTDGS-KPVSKVNV 118

Query: 310 NVMFGCGHWN--RGLFHGAAGLLGLGRGPLSFSSQLQSLYGHSFSYCLVDRNSDTNVSSK 367
            V+  C        L  G+ G+ GL    L+  +Q+ S    +  + L    +     + 
Sbjct: 119 GVLAACAPSKLLASLPRGSTGVAGLANSGLALPAQVASAQKVANRFLL-CLPTGGPGVAI 177

Query: 368 LIFGEDKDLLNHPNLNFTSLVSGKENPVDTFYYLQIKSIIVGGEVLSIPDETWRLSPEGA 427
              G         ++ +T LV+   +P    +Y+  +SI+VG   + +P+          
Sbjct: 178 FGGGPVPWPQFTQSMPYTPLVTKGGSP---AHYISARSIVVGDTRVPVPEGAL-----AT 229

Query: 428 GGTIIDSGTTLSYFAEPAYQIIKQAFMKKVKGYP--------LVKDFPILDPCYNVSGIE 479
           GG ++ +           Y+ +  AF K +             V+       CY+   + 
Sbjct: 230 GGVMLSTRLPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTLG 289

Query: 480 K----MELPEFGIQFADGGVWNFPVENYFIRLDPEDVVCLAIL-------GTPRSALSII 528
                  +P   +    G  W    +N  + +  +   C+A +       G  R+   I+
Sbjct: 290 NNLGGYAVPNVQLGLDGGSDWTMTGKNSMVDVK-QGTACVAFVEMKGVAAGDGRAPAVIL 348

Query: 529 GNYQQQNFHI 538
           G  Q ++F +
Sbjct: 349 GGAQMEDFVL 358
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Length = 329 Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Length = 323 Back     information, alignment and structure
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Length = 387 Back     information, alignment and structure
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 334 Back     information, alignment and structure
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Length = 325 Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Length = 373 Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Length = 342 Back     information, alignment and structure
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Length = 370 Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 337 Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Length = 357 Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Length = 323 Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Length = 335 Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Length = 323 Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Length = 324 Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Length = 329 Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Length = 337 Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Length = 340 Back     information, alignment and structure
>d2fzta1 a.46.3.1 (A:1-78) Hypothetical protein TM0693 {Thermotoga maritima [TaxId: 2336]} Length = 78 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query538
d3psga_370 Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} 100.0
g1htr.1372 Pepsin(ogen) {Human (Homo sapiens), progastricsin 100.0
d1dpja_329 Acid protease {Baker's yeast (Saccharomyces cerevi 100.0
d2apra_325 Acid protease {Bread mold (Rhizopus chinensis) [Ta 100.0
d1oewa_330 Endothiapepsin {Chestnut blight fungus (Endothia p 100.0
d1am5a_324 Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 100.0
d1smra_335 Chymosin (synonym: renin) {Mouse (Mus musculus) [T 100.0
d1j71a_334 Acid protease {Yeast (Candida tropicalis) [TaxId: 100.0
d1miqa_373 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 100.0
d1mppa_357 Pepsin {Mucor pusillus [TaxId: 4840]} 100.0
d1eaga_342 Acid protease {Yeast (Candida albicans) [TaxId: 54 100.0
g1lya.1338 Cathepsin D {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1bxoa_323 Acid protease {Fungus (Penicillium janthinellum), 100.0
d1hrna_337 Chymosin (synonym: renin) {Human (Homo sapiens) [T 100.0
d1izea_323 Acid protease {Fungus (Aspergillus oryzae) [TaxId: 100.0
d1t6ex_381 Xylanase inhibitor TAXI-I {Wheat (Triticum aestivu 100.0
d1qdma2337 Plant acid proteinase, phytepsin {Barley (Hordeum 100.0
d3cmsa_323 Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId 100.0
d2bjua1329 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 100.0
g1b5f.1326 Plant acid proteinase, phytepsin {Cynara carduncul 100.0
d2qp8a1387 beta-secretase (memapsin) {Human (Homo sapiens) [T 100.0
d1wkra_340 Acid protease {Irpex lacteus (Polyporus tulipifera 100.0
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin(ogen)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=2.8e-49  Score=411.75  Aligned_cols=329  Identities=25%  Similarity=0.365  Sum_probs=256.4

Q ss_pred             CChhHHHHhHHHHHHHHHHHHhhhccccchhhhhhhhcccccccCCccCCCCCCCCccCCcccceeeeeeeccccCCeeE
Q 041228          113 KSVSESTIRDLTRIQALHRRIIEKKNQNTVSRLKKESQKSKKQIKPVVTPAASPESYASGVSGQLVATLESGVSLGAGEY  192 (538)
Q Consensus       113 ~~~~~~l~rD~~R~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~g~~~g~~~Y  192 (538)
                      +++.+.++|+..+.++|++|-..   ...     +.        .+.    ..        ......||.   ...+.+|
T Consensus        10 ~~~r~~~~~~~~~~~~~~~~~~~---~~~-----~~--------~~~----~~--------~~~~~~~l~---n~~d~~Y   58 (370)
T d3psga_          10 KSLRQNLIKDGKLKDFLKTHKHN---PAS-----KY--------FPE----AA--------ALIGDEPLE---NYLDTEY   58 (370)
T ss_dssp             CCHHHHHHHTTCHHHHHHHCCCC---GGG-----GT--------CTT----SC--------CSSCCCTTG---GGTTCCE
T ss_pred             ccHHHHHHHcCcHHHHHHhcccc---hhh-----hh--------ccc----cc--------Ccccccccc---cccCCEE
Confidence            56899999998888888765410   000     00        000    00        011123555   3456899


Q ss_pred             EEEEEeCCCCceeeEEEecCCCceeEECCCCCCCcCCCCCCCCCCCCCcccccccCCccCCCCCCCCCCCCCCCCCCcee
Q 041228          193 FMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFEQNGPHYDPKDSSSFKNISCHDPRCHLVSSPDPPRPCQAENQTCP  272 (538)
Q Consensus       193 ~v~I~IGTP~q~~~li~DTGS~~tWV~c~~C~~C~~q~~~~FdPs~SSTy~~~~C~s~~C~~~~~~~~~~~C~~~~~~c~  272 (538)
                      +++|.||||+|+|.|+|||||+++||+|.+|..|.++.++.|||++|+||+...                        |.
T Consensus        59 ~~~i~iGtP~Q~~~vi~DTGSs~~Wv~~~~C~~~~~~~~~~yd~~~Sst~~~~~------------------------~~  114 (370)
T d3psga_          59 FGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFEATS------------------------QE  114 (370)
T ss_dssp             EEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSGGGTTSCCBCGGGCTTCEEEE------------------------EE
T ss_pred             EEEEEEcCCCeEEEEEEeCCCCCeEEECccCCCcccccccccCCCcccccccCC------------------------Cc
Confidence            999999999999999999999999999999999999999999999999998764                        78


Q ss_pred             eEEEeCCCCceEEEEEEEEEEEcccCCCCCccCeeEeeeEEEEEEeccCCcc---CcceeecccCCCCC------hhhHH
Q 041228          273 YFYWYGDSSNTTGDFALETFTVNLSTPTGKSEFRQVENVMFGCGHWNRGLFH---GAAGLLGLGRGPLS------FSSQL  343 (538)
Q Consensus       273 y~v~YgdGs~~~G~~~~Dtltl~~~s~~g~~~~~~v~~~~FGc~~~~~g~f~---~~dGILGLg~~~lS------l~sQl  343 (538)
                      |.+.|++|+ +.|.++.|+++++         ...++++.|||+....+.+.   +.+||+|||.+..+      ++.++
T Consensus       115 ~~~~Yg~Gs-~~G~~~~d~~~~~---------~~~~~~~~f~~~~~~~~~~~~~~~~~Gi~gl~~~~~~~~~~~~~~~~l  184 (370)
T d3psga_         115 LSITYGTGS-MTGILGYDTVQVG---------GISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNL  184 (370)
T ss_dssp             EEEESSSCE-EEEEEEEEEEEET---------TEEEEEEEEEEECSCCCGGGGGCSCSEEEECSCGGGCGGGCCCHHHHH
T ss_pred             EEEEeCCce-EEEEEEEEEEeee---------ceeeeeeEEEEEeeccCceecccccccccccccCcccccCCCchhhhh
Confidence            999999996 8899999999997         56899999999998877543   56899999987654      33444


Q ss_pred             --hhhcc-CceEEEecCCCCCCCCCcceEecCCCCCCCCCCceeEeeccCCCCCccceEEEEEeeEEeCCeeeccCCccc
Q 041228          344 --QSLYG-HSFSYCLVDRNSDTNVSSKLIFGEDKDLLNHPNLNFTSLVSGKENPVDTFYYLQIKSIIVGGEVLSIPDETW  420 (538)
Q Consensus       344 --~~~~~-~~FSycL~~~~~~~~~~G~LtfGg~d~~~~~g~l~~tPl~~~~~~~~~~~y~V~L~gIsVgG~~l~i~~~~f  420 (538)
                        ++++. ++|++|+.....   ..|.|+|||+|+.++.+++.|+|+.      ...+|.|.+++|.|+|+.+...    
T Consensus       185 ~~~~~i~~~~fs~~l~~~~~---~~g~l~~Gg~d~~~~~~~l~~~p~~------~~~~w~v~~~~i~v~g~~~~~~----  251 (370)
T d3psga_         185 WDQGLVSQDLFSVYLSSNDD---SGSVVLLGGIDSSYYTGSLNWVPVS------VEGYWQITLDSITMDGETIACS----  251 (370)
T ss_dssp             HHTTCSSSSEEEEEEC--------CEEEEETCCCGGGBSSCCEEEECS------EETTEEEEECEEESSSSEEECT----
T ss_pred             hhhcccccceeEEEeecCCC---CCceEecCCcCchhcccceeEEeec------ccceEEEEEeeEEeCCeEEecC----
Confidence              34454 489999965432   3589999999999999999999987      4679999999999999877642    


Q ss_pred             ccCCCCCCcEEEeccccCccCCHHHHHHHHHHHHHHhcCCcCCCCCCceecccCCCCCcccccceEEEEEecCeEEEeCC
Q 041228          421 RLSPEGAGGTIIDSGTTLSYFAEPAYQIIKQAFMKKVKGYPLVKDFPILDPCYNVSGIEKMELPEFGIQFADGGVWNFPV  500 (538)
Q Consensus       421 ~~~~~~~~~aIIDSGTs~t~LP~~~y~al~~af~~~~~~~~~~~~~~~ld~C~~~s~~~~~~lP~I~f~F~gg~~~~lp~  500 (538)
                           .+..+||||||++++||+++|++|+++|...    ....+ .+..+|++..     .+|+|+|+| ||++|.|++
T Consensus       252 -----~~~~aiiDSGTs~~~lp~~~~~~i~~~l~~~----~~~~~-~~~~~C~~~~-----~~P~l~f~f-~g~~~~l~~  315 (370)
T d3psga_         252 -----GGCQAIVDTGTSLLTGPTSAIANIQSDIGAS----ENSDG-EMVISCSSID-----SLPDIVFTI-DGVQYPLSP  315 (370)
T ss_dssp             -----TCEEEEECTTCCSEEEEHHHHHHHHHHTTCE----ECTTC-CEECCGGGGG-----GCCCEEEEE-TTEEEEECH
T ss_pred             -----CCccEEEecCCceEeCCHHHHHHHHHHhCCe----eecCC-cEEEeccccC-----CCceEEEEE-CCEEEEECh
Confidence                 3468999999999999999999987766432    22222 3456899876     489999999 899999999


Q ss_pred             CccEEEecCCCcEEE-EEEec----CCCCceEecHhhhceeeC
Q 041228          501 ENYFIRLDPEDVVCL-AILGT----PRSALSIIGNYQQQNFHI  538 (538)
Q Consensus       501 ~~yl~~~~~~~~~Cl-af~~~----~~~~~~IiGn~~qq~~~V  538 (538)
                      ++|+++.+   ..|+ +|...    ..++.||||+.|||++||
T Consensus       316 ~~yi~~~~---~~c~~~~~~~~~~~~~~~~~ILG~~flr~~y~  355 (370)
T d3psga_         316 SAYILQDD---DSCTSGFEGMDVPTSSGELWILGDVFIRQYYT  355 (370)
T ss_dssp             HHHEEECS---SCEEESEEEECCCTTSCCEEEECHHHHTTEEE
T ss_pred             HHeEEEcC---CeEEEEEEEcccCCCCCCcEEECHHhhcCEEE
Confidence            99999754   4575 35432    245689999999999985
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Back     information, alignment and structure
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Back     information, alignment and structure
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Back     information, alignment and structure
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Back     information, alignment and structure