Citrus Sinensis ID: 041236

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-
Protein Sequence
MKARNLNFPLGKVLHQLIGCCNGLLCIVVQIHEHAGEADLVLWNPWTGRYKTVPISVVGLTLDMYGFGYINTFGFCFDQSTNDYKIVRLVNDDGITHFQIYSLNTNFWKTGILPDRIHDTKERFRTIFSSVILCFSLVDDKFRVILLPDDVAKGAEFDLFDFGGCLGLIHCHARRRAHVDIWTRNELNWIKIMCIPRLEDVHSSLYLAPVFFYSGAGEVLLHENDTYPSHGKDVFYLYSLEKKIFRKFKIEGMEQFPFHIHMAYTPSLTLLTRCRERDSSK
Secondary Structure (PSIPRED)
cccccccccccccccEEEEEEccEEEEEEEEccccccEEEEEEccccccEEEcccccccccccccccccEEEEEEEEEcccccEEEEEEEccccccEEEEEEcccccEEcccccccEEEccccccEEccEEEEEEEccccEEEEEEcccccccccEEEEEEEccEEEEEEEEcccccEEEEEEEccccEEEEEEEccccccccccccEEEEEEEcccEEEEEEccccccccccEEEEEEccccEEEEEEEcccccccEEEEEEEEcccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccEEEEEEccccEEEEEEcHccccccccEEEEccccccccccccccccccccccccEEEEEEEEccccccccEEEEEEEEccccEEEEEEEEcccccccccccccccccccccccccccEEEEEEcccccEEEEEcccccccccEEEEEEEcEEEEEEEEccccccEEEEEEEEEcccEEEEEEcccccccccccEcEEEEEccccEEEEEEcccccccccEEEEEEEccccEEEEEEEEccccEEEEEEEEEEccEEEccccccccccc
Coil and Loop (DISEMBL)
mkarnlnfplGKVLHQLIGCCNGLLCIVVQIHEhageadlvlwnpwtgryktvpisVVGLTLDmygfgyintfgfcfdqstndyKIVRLVNDDGITHFQIYSLNTnfwktgilpdrihdTKERFRTIFSSVILCFslvddkfrvillpddvakgaefdlfdfggclglihcHARRRAHVDIWTRNELNWIKimciprledvhsslylapvffysgagevllhendtypshgkdvFYLYSLEKKIFRKFKIegmeqfpfhihmaytpsltlltrcrerdssk
Flexible Loop (DISEMBL)
mkarnlnfPLGKVLHQLIGCCNGLLCIVVQIHEHAGEADLVLWNPWTGRYKTVPISVVGLTLDMYGFGYINTFGFCFDQSTNDYKIVRLVNDDGITHFQIYSLNTNFWKTGILPDRIHDTKERFRTIFSSVILCFSLVDDKFRVILLPDDVAKGAEFDLFDFGGCLGLIHCHARRRAHVDIWTRNELNWIKIMCIPRLEDVHSSLYLAPVFFYSGAGEVLLHENDTYPSHGKDVFYLYSLEKKIFRKFKIEGMEQFPFHIHmaytpsltlltrcrerdssk
Low Complexity Region (SEG)
MKARNLNFPLGKVLHQLIGCCNGLLCIVVQIHEHAGEADLVLWNPWTGRYKTVPISVVGLTLDMYGFGYINTFGFCFDQSTNDYKIVRLVNDDGITHFQIYSLNTNFWKTGILPDRIHDTKERFRTIFSSVILCFSLVDDKFRVILLPDDVAKGAEFDLFDFGGCLGLIHCHARRRAHVDIWTRNELNWIKIMCIPRLEDVHSSLYLAPVFFYSGAGEVLLHENDTYPSHGKDVFYLYSLEKKIFRKFKIEGMEQFPFHIHMAYTPSLTLLTRCRERDSSK
Disordered region (IsUnstruct)
*****LNFPLGKVLHQLIGCCNGLLCIVVQIHEHAGEADLVLWNPWTGRYKTVPISVVGLTLDMYGFGYINTFGFCFDQSTNDYKIVRLVNDDGITHFQIYSLNTNFWKTGILPDRIHDTKERFRTIFSSVILCFSLVDDKFRVILLPDDVAKGAEFDLFDFGGCLGLIHCHARRRAHVDIWTRNELNWIKIMCIPRLEDVHSSLYLAPVFFYSGAGEVLLHENDTYPSHGKDVFYLYSLEKKIFRKFKIEGMEQFPFHIHMAYTPSLTLLTRC*******
Disordered Region (DISOPRED)
*KARNLNFPLGKVLHQLIGCCNGLLCIVVQIHEHAGEADLVLWNPWTGRYKTVPISVVGLTLDMYGFGYINTFGFCFDQSTNDYKIVRLVNDDGITHFQIYSLNTNFWKTGILPDRIHDTKERFRTIFSSVILCFSLVDDKFRVILLPDDVAKGAEFDLFDFGGCLGLIHCHARRRAHVDIWTRNELNWIKIMCIPRLEDVHSSLYLAPVFFYSGAGEVLLHENDTYPSHGKDVFYLYSLEKKIFRKFKIEGMEQFPFHIHMAYTPSLT************
Disordered Region (DISEMBL)
MKARNLNFPLGKVLHQLIGCCNGLLCIVVQIHEHAGEADLVLWNPWTGRYKTVPISVVGLTLDMYGFGYINTFGFCFDQSTNDYKIVRLVNDDGITHFQIYSLNTNFWKTGILPDRIHDTKERFRTIFSSVILCFSLVDDKFRVILLPDDVAKGAEFDLFDFGGCLGLIHCHARRRAHVDIWTRNELNWIKIMCIPRLEDVHSSLYLAPVFFYSGAGEVLLHENDTYPSHGKDVFYLYSLEKKIFRKFKIEGMEQFPFHIHMAYTPSLTLLTRCRERDSSK
Disordered Region (DISPRO)
**ARNLNFPLGKVLHQLIGCCNGLLCIVVQIHEHAGEADLVLWNPWTGRYKTVPISVVGLTLDMYGFGYINTFGFCFDQSTNDYKIVRLVNDDGITHFQIYSLNTNFWKTGILPDRIHDTKERFRTIFSSVILCFSLVDDKFRVILLPDDVAKGAEFDLFDFGGCLGLIHCHARRRAHVDIWTRNELNWIKIMCIPRLEDVHSSLYLAPVFFYSGAGEVLLHENDTYPSHGKDVFYLYSLEKKIFRKFKIEGMEQFPFHIHMAYTPSLTLLTR********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKARNLNFPLGKVLHQLIGCCNGLLCIVVQIHEHAGEADLVLWNPWTGRYKTVPISVVGLTLDMYGFGYINTFGFCFDQSTNDYKIVRLVNDDGITHFQIYSLNTNFWKTGILPDRIHDTKERFRTIFSSVILCFSLVDDKFRVILLPDDVAKGAEFDLFDFGGCLGLIHCHARRRAHVDIWTRNELNWIKIMCIPRLEDVHSSLYLAPVFFYSGAGEVLLHENDTYPSHGKDVFYLYSLEKKIFRKFKIEGMEQFPFHIHMAYTPSLTLLTRCRERDSSK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	281	2.2.26 [Sep-21-2011]
Q9SU30	413	F-box protein CPR30 OS=Ar	yes	no	0.718	0.489	0.244	1e-10
Q9LIR8	364	F-box/kelch-repeat protei	no	no	0.669	0.516	0.244	8e-09
Q8GXC7	427	F-box/kelch-repeat protei	no	no	0.693	0.456	0.267	8e-09
Q9SUY0	402	F-box protein At4g22390 O	no	no	0.661	0.462	0.228	9e-07
Q9LU24	360	Putative F-box protein At	no	no	0.462	0.361	0.242	1e-06
Q0V7S0	459	F-box protein At1g47340 O	no	no	0.768	0.470	0.256	2e-06
Q9LUT9	409	F-box protein At3g17320 O	no	no	0.309	0.212	0.302	6e-05
Q9LUQ9	391	F-box/kelch-repeat protei	no	no	0.323	0.232	0.307	0.0002
Q9LUP9	374	Putative F-box protein At	no	no	0.306	0.229	0.303	0.0002
Q9LHQ1	220	Putative F-box protein At	no	no	0.302	0.386	0.294	0.0003

>sp|Q9SU30|CPR30_ARATH F-box protein CPR30 OS=Arabidopsis thaliana GN=CPR30 PE=1 SV=2

 Score = 67.4 bits (163), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 114/254 (44%), Gaps = 52/254 (20%)

Query: 16  QLIGCCNGLLCIVVQIHEHAGEADLVLWNPWTGRYKTVPISVVGLTLDMYGFGYINTFGF 75
           ++ G  NGL+ +           DL ++NP T +   +P S + L       GY+  +G 
Sbjct: 90  EVFGSSNGLIGL------SNSPTDLAVFNPSTRQIHRLPPSSIDLPDGSSTRGYV-FYGL 142

Query: 76  CFDQSTNDYKIVRLV-----NDDGIT-----HFQIYSLNTNFWKT--------------- 110
            +D  ++DYK+VR+V     ++D +        +++SL  N WK                
Sbjct: 143 GYDSVSDDYKVVRMVQFKIDSEDELGCSFPYEVKVFSLKKNSWKRIESVASSIQLLFYFY 202

Query: 111 ---------GILP-DRIHDTKERFRTIFS-SVILCFSLVDDKFRVILLPDDVAKG---AE 156
                    G+L  + +H    R   + + ++I+ F L  ++F ++  P+ VA G    +
Sbjct: 203 YHLLYRRGYGVLAGNSLHWVLPRRPGLIAFNLIVRFDLALEEFEIVRFPEAVANGNVDIQ 262

Query: 157 FDLFDFGGCLGLIHCHARRRAHVDIWTRNELN----WIKIMCIPRLEDVHSSLYLAPVFF 212
            D+    GCL L+ C+  + ++VD+W   E N    W K+  + + + V S  Y+ P+ +
Sbjct: 263 MDIGVLDGCLCLM-CNYDQ-SYVDVWMMKEYNVRDSWTKVFTVQKPKSVKSFSYMRPLVY 320

Query: 213 YSGAGEVLLHENDT 226
                +VLL  N+T
Sbjct: 321 SKDKKKVLLELNNT 334

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Regulates negatively both salicylic acid (SA)-dependent and SA-independent defense signaling.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LIR8|FBK67_ARATH F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana GN=At3g23880 PE=2 SV=1

 Score = 61.2 bits (147), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 97/221 (43%), Gaps = 33/221 (14%)

Query: 10  LGKVLHQLIGCCNGLLCIVVQIHEHAGEADLVLWNPWTGRYKTVPISVVGLTLDMYGFGY 69
           LG+  +Q++G C+GL+C  V       +  L LWNP     + +  S +  + D      
Sbjct: 105 LGRDYYQVVGTCHGLVCFHVDY-----DKSLYLWNPTIKLQQRLSSSDLETSDDEC---- 155

Query: 70  INTFGFCFDQSTNDYKIVRLVNDDGITHFQ--IYSLNTNFWKTGI-LPDRIHDTKERFRT 126
           + T+GF +D+S +DYK+V L+        +  IYS     W++    P  +    +    
Sbjct: 156 VVTYGFGYDESEDDYKVVALLQQRHQVKIETKIYSTRQKLWRSNTSFPSGVVVADKSRSG 215

Query: 127 IFSSVIL--------------CFSLVDDKFRVILLPDDVAKGA-EFDLFDFGGCLGLIHC 171
           I+ +  L               + +  D+F+ +  P    +G     L D  GCL ++ C
Sbjct: 216 IYINGTLNWAATSSSSSWTIISYDMSRDEFKELPGPVCCGRGCFTMTLGDLRGCLSMV-C 274

Query: 172 HARRRAHVDIWTRNEL----NWIKIMCIPRLEDVHSSLYLA 208
           +  + A+ D+W   E     +W K++ IP L D    L+++
Sbjct: 275 YC-KGANADVWVMKEFGEVYSWSKLLSIPGLTDFVRPLWIS 314

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana GN=At3g06240 PE=2 SV=1

 Score = 61.2 bits (147), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 99/228 (43%), Gaps = 33/228 (14%)

Query: 16  QLIGCCNGLLCIVVQIHEHAGEADLVLWNPWTGRYKTVPISVVGLTLDMYGFGYINTFGF 75
           +++G  NGL+CI        GE  + L+NP TG  K +P +    +++ Y      T+GF
Sbjct: 164 EIVGSSNGLVCI------SPGEGAVFLYNPTTGDSKRLPENFRPKSVE-YERDNFQTYGF 216

Query: 76  CFDQSTNDYKIVRLV-NDDGITHFQIYSLNTNFWK----------TGILPDRIH------ 118
            FD  T+DYK+V+LV   + I    +YSL  + W+           G     +H      
Sbjct: 217 GFDGLTDDYKLVKLVATSEDILDASVYSLKADSWRRICNLNYEHNDGSYTSGVHFNGAIH 276

Query: 119 --DTKERFRTIFSSVILCFSLVDDKFRVILLPDDVAKGA-EFDLFDFGGCLG-LIHCHAR 174
              T+ R       V++ F +  ++FR + +PD+    +  F  F  G   G L   ++ 
Sbjct: 277 WVFTESRHN---QRVVVAFDIQTEEFREMPVPDEAEDCSHRFSNFVVGSLNGRLCVVNSC 333

Query: 175 RRAHVDIWTRNELNWIKIMCIPRLEDVHSSLYLAPVFFYSGAGEVLLH 222
              H DIW  +E    K     R+  ++ S  + P+       EVLL 
Sbjct: 334 YDVHDDIWVMSEYGEAKSWSRIRINLLYRS--MKPLCSTKNDEEVLLE 379

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUY0|FB244_ARATH F-box protein At4g22390 OS=Arabidopsis thaliana GN=At4g22390 PE=2 SV=3

 Score = 54.3 bits (129), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 95/228 (41%), Gaps = 42/228 (18%)

Query: 38  ADLVLWNPWTGRYKTVPISVVGLTLDMYGFGYINTFGFCFDQSTNDYKIVRLVN---DDG 94
            DL ++NP T +   +PI  +          Y+  +G  +D   +D+K+VR+V     +G
Sbjct: 106 VDLAIFNPSTRKIHRLPIEPIDFPERDITREYV-FYGLGYDSVGDDFKVVRIVQCKLKEG 164

Query: 95  ITHF------QIYSLNTNFWKT----------------GILPDR---------IHDTKER 123
              F      +++SL  N WK                  +LP R         +H    R
Sbjct: 165 KKKFPCPVEVKVFSLKKNSWKRVCLMFEFQILWISYYYHLLPRRGYGVVVNNHLHWILPR 224

Query: 124 FRTIFS-SVILCFSLVDDKFRVILLPDDVAKGAEFDLFDFGGCLGLIHCHARRRAHVDIW 182
            + + + + I+ + L  D   V+  P ++      D+    GC+ L+ C+    +HVD+W
Sbjct: 225 RQGVIAFNAIIKYDLASDDIGVLSFPQELYIEDNMDIGVLDGCVCLM-CYDEY-SHVDVW 282

Query: 183 TRNEL----NWIKIMCIPRLEDVHSSLYLAPVFFYSGAGEVLLHENDT 226
              E     +W K+  +P+ E V S  ++ P+       ++LL  N+ 
Sbjct: 283 VLKEYEDYKSWTKLYRVPKPESVESVEFIRPLICSKDRSKILLEINNA 330

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LU24|FB145_ARATH Putative F-box protein At3g16210 OS=Arabidopsis thaliana GN=At3g16210 PE=4 SV=1

 Score = 54.3 bits (129), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 72/161 (44%), Gaps = 31/161 (19%)

Query: 5   NLNFPLGKVLHQLIGC---CNGLLCIVVQIHEHAGEADLVLWNPWTGRYKTVPISVVGLT 61
            L+FPL + +     C   C+G LC+ ++ H       L++WNP++ ++K VP   +   
Sbjct: 76  KLDFPLDQSMIDESTCVLHCDGTLCVTLKNHT------LMVWNPFSKQFKIVPNPGIYQD 129

Query: 62  LDMYGFGYINTFGFCFDQSTNDYKIVRLVNDDGITHFQIYSLNTNFWKTGI---LPDRIH 118
            ++ GFGY        D   +DYK+V  ++   ++   ++   T  W   +    PD  +
Sbjct: 130 SNILGFGY--------DPVHDDYKVVTFIDRLDVSTAHVFEFRTGSWGESLRISYPDWHY 181

Query: 119 DTKE-----------RFRTIFSSVILCFSLVDDKFRVILLP 148
             +             +R+     ILCF+L   ++R + LP
Sbjct: 182 RDRRGTFLDQYLYWIAYRSSADRFILCFNLSTHEYRKLPLP 222

Arabidopsis thaliana (taxid: 3702)

>sp|Q0V7S0|FB39_ARATH F-box protein At1g47340 OS=Arabidopsis thaliana GN=At1g47340 PE=2 SV=1

 Score = 53.1 bits (126), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 112/261 (42%), Gaps = 45/261 (17%)

Query: 19  GCCNGLLCIV-VQIHEHAGEADLVLWNPWTGRYKTVPISVVGLTLDMYGFGYINTFGFCF 77
           G  +GL+    + I+EH  +   V+ NP TGRY ++P       L+ Y   +  +F F F
Sbjct: 146 GYASGLMYFYGMWINEHDYDGVPVICNPLTGRYASLPF------LERYRKAF--SF-FGF 196

Query: 78  DQSTNDYKIVRLVNDDGITHFQIYSLNTN--FW-------KTGILPDRI---------HD 119
           D     YK++ +    G  H  + +  T    W       K  I+ D I          D
Sbjct: 197 DPIEKQYKVLFMAYPSGPDHHTVLTFGTGEMSWRKIECSVKHDIVSDGICINGVMYYLGD 256

Query: 120 TKERFRTIFSSVILCFSLVDDKFRVILLPDDVAKGAEFDLFDFGGCLGLIHC--HARRRA 177
           T E F T F  V++CF +  + F  I        G+  ++ ++ G LGL+ C  +     
Sbjct: 257 TSE-FMTAF--VVVCFDVRSETFSFIY------PGSYCEVINYKGKLGLVFCDDYTDDAI 307

Query: 178 HVDIWT---RNELNWIKIMCIPRLEDVHSSLYLAPVFFYSGAGEVLLHENDTYPSHGKDV 234
            + +W    + ++ W K     +L+D   S +   +   S AGE++L   D        V
Sbjct: 308 ELRLWVLEDKEKIEWSKYAY--KLKDEKFSAHYVSIVGVSAAGEIVLSMADFTSKQPFYV 365

Query: 235 FYLYSLEKKIFRKFKIEGMEQ 255
           FY Y+ E+   +  +I+G E+
Sbjct: 366 FY-YNPERNTLQCTEIQGFEE 385

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUT9|FB150_ARATH F-box protein At3g17320 OS=Arabidopsis thaliana GN=At3g17320 PE=2 SV=2

 Score = 48.1 bits (113), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 22/109 (20%)

Query: 13  VLHQLIGCCNGLLCIVVQIHEHAGEADLVLWNPWTGRYKTVPISVVGLTLDMYGFGYINT 72
           V+ Q+  C   LLCI  +I+       LV+WNP++G+ + +         D+Y  GY + 
Sbjct: 108 VISQVYHCDGLLLCITNEINSR-----LVVWNPYSGQTRWIEPRTSYREWDIYALGYESK 162

Query: 73  FGFCFDQSTNDYKIVRLVN---DDG---------ITHFQIYSLNTNFWK 109
                + +   YKI+R ++   D G         +  F+IYSL+TN WK
Sbjct: 163 -----NNAKRSYKILRYLDAYEDMGDMSVEPRTRVCEFEIYSLDTNSWK 206

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUQ9|FBK56_ARATH F-box/kelch-repeat protein At3g16740 OS=Arabidopsis thaliana GN=At3g16740 PE=1 SV=1

 Score = 47.0 bits (110), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 52/114 (45%), Gaps = 23/114 (20%)

Query: 10  LGKVLHQLIGCCNGLLCIVVQIHEHAGEADLVLWNPWTGRYKTVPISVVGLTLDMYGFGY 69
           + K+ H    C   LLCI   I        LV+WNP++G+ + +        LD Y  GY
Sbjct: 102 ISKIFH----CGGLLLCITKDISR------LVVWNPYSGQTRWIKPRNSYHRLDRYALGY 151

Query: 70  INTFGFCFDQSTNDYKIVRLVND-------DGITHFQIYSLNTNFWK-TGILPD 115
                   ++S   YKI+R ++D         I  F+IY LN++ WK   + PD
Sbjct: 152 EEK-----NKSCRCYKILRFMDDYEDDRALRLIREFEIYDLNSDSWKVVNVTPD 200

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUP9|FB152_ARATH Putative F-box protein At3g17480 OS=Arabidopsis thaliana GN=At3g17480 PE=4 SV=1

 Score = 46.6 bits (109), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 13/99 (13%)

Query: 11  GKVLHQLIGCCNGLLCIVVQIHEHAGEADLVLWNPWTGRYKTVPISVVGLTLDMYGFGYI 70
           GKV    +  CNGLL            + +V+WNP TG+ K +           Y  GY 
Sbjct: 104 GKVESFEVFHCNGLLLF-------TNTSTIVVWNPCTGQTKWIQTESANTRYHKYALGYE 156

Query: 71  NTFGFCFDQSTNDYKIVRLVNDDGITHFQIYSLNTNFWK 109
           N    C      DYKI+R ++D      +IY  N++ W+
Sbjct: 157 NK-NLC-----RDYKILRFLDDGTNFELEIYEFNSSSWR 189

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LHQ1|FB169_ARATH Putative F-box protein At3g20705 OS=Arabidopsis thaliana GN=At3g20705 PE=4 SV=1

 Score = 45.8 bits (107), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 17/102 (16%)

Query: 8   FPLGKVLHQLIGCCNGLLCIVVQIHEHAGEADLVLWNPWTGRYKTVPISVVGLTLDMYGF 67
           F + ++ H     CNGL   V Q      +  LV+WNP+  + + +  S    T+D +  
Sbjct: 102 FCISQIFH-----CNGLFLCVSQ---KDMDNRLVVWNPYCSKPRWIKPSYNYRTVDRFAL 153

Query: 68  GYINTFGFCFDQSTNDYKIVRLVNDDGITHFQIYSLNTNFWK 109
           GY        D+S   +KI+RL  D+ + + +IY L++N W+
Sbjct: 154 GY--------DKSCGSHKILRLFGDN-LNNLEIYDLSSNSWR 186

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	281
356555728	394	PREDICTED: F-box protein CPR30-like [Gly	0.793	0.565	0.284	2e-12
297835440	347	F-box family protein [Arabidopsis lyrata	0.669	0.541	0.280	3e-11
357495307	514	F-box/kelch-repeat protein [Medicago tru	0.676	0.369	0.277	1e-10
357473337	403	F-box protein [Medicago truncatula] gi|3	0.622	0.434	0.276	2e-10
41687974	377	S haplotype-specific F-box protein 5 [Pr	0.907	0.676	0.268	3e-10
255583943	389	ubiquitin-protein ligase, putative [Rici	0.782	0.565	0.25	4e-10
224053103	408	predicted protein [Populus trichocarpa]	0.882	0.607	0.25	7e-10
297809553	414	F-box family protein [Arabidopsis lyrata	0.718	0.487	0.250	1e-09
207525601	254	SFB [Prunus spinosa] gi|207525603|gb|ACI	0.804	0.889	0.269	3e-09
297829150	427	F-box family protein [Arabidopsis lyrata	0.690	0.454	0.266	3e-09

>gi|356555728|ref|XP_003546182.1| PREDICTED: F-box protein CPR30-like [Glycine max]

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 114/271 (42%), Gaps = 48/271 (17%)

Query: 17  LIGCCNGLLCIVVQIHEHAGEADLVLWNPWTGRYKTVPISVVGLTL--DMYGFGYINTFG 74
           L+G CNGLLCI           D+  WNP   +++ +P   V      D   F      G
Sbjct: 93  LLGSCNGLLCI------SNVADDIAFWNPSLRQHRILPYLPVPRRRHPDTTLFA-ARVCG 145

Query: 75  FCFDQSTNDYKIVRL-----VNDDGI-THFQIYSLNTNFWKT-GILP------------- 114
           F FD  T DYK+VR+     ++D    +  ++Y+L  N WKT   LP             
Sbjct: 146 FGFDHKTRDYKLVRISYFVDLHDRSFDSQVKLYTLRANAWKTLPSLPYALCCARTMGVFV 205

Query: 115 -DRIH-DTKERFRTIFSSVILCFSLVDDKFRVILLPDD--VAKGAEFDLFDFGGCLGL-I 169
            + +H     +       +I+ F L  D FR + LPD   V  G E DL   GG L + +
Sbjct: 206 GNSLHWVVTRKLEPDQPDLIIAFDLTHDIFRELPLPDTGGVDGGFEIDLALLGGSLCMTV 265

Query: 170 HCHARRRAHVDIWTRNELN----WIKIMCIPRLEDVHSSLYLAPVFFYSGAGEVLLHEND 225
           + H  R   +D+W   E N    W K+  +    ++ S   + P+ + S   +VLL    
Sbjct: 266 NFHKTR---IDVWVMREYNRRDSWCKVFTLEESREMRSLKCVRPLGYSSDGNKVLLE--- 319

Query: 226 TYPSHGKDVFYLYSLEKKIFRKFKIEGMEQF 256
               H +   + Y LEKK     KI+G+   
Sbjct: 320 ----HDRKRLFWYDLEKKEVALVKIQGLPNL 346

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297835440|ref|XP_002885602.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] gi|297331442|gb|EFH61861.1| F-box family protein [Arabidopsis lyrata subsp. lyrata]

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 104/221 (47%), Gaps = 33/221 (14%)

Query: 10  LGKVLHQLIGCCNGLLCIVVQIHEHAGEADLVLWNPWTGRYKTVPISVVGLTLDMYGFGY 69
           LG+  +Q++G C+GL+C  V       E  L LWNP     + +P    G  L+     +
Sbjct: 88  LGRDYYQVVGTCHGLVCFHVDY-----EKSLYLWNPTIKVQQRLP----GSDLETSDDEF 138

Query: 70  INTFGFCFDQSTNDYKIVRLVND--DGITHFQIYSLNTNFWKTG-------ILPDR---- 116
           + T+GF +D+S +DYK+V L+       T  +IYS     W +        ++ D+    
Sbjct: 139 VVTYGFGYDESEDDYKVVALLQKRHQMKTEAKIYSTRQKLWSSNTCFPSGVVVADKSRSG 198

Query: 117 --IHDTKERFRTIFSS--VILCFSLVDDKFRVILLPDDVAKGA-EFDLFDFGGCLGLIHC 171
             I+ T     T  SS   I+ + +  D+F+ +  P   ++G     L D  GCL ++ C
Sbjct: 199 VYINGTLNWAATSSSSPWTIISYDMSRDEFKQLPGPVYCSRGCFTMTLGDLRGCLSMV-C 257

Query: 172 HARRRAHVDIWTRNEL----NWIKIMCIPRLEDVHSSLYLA 208
           +  + A+ DIW   E     +W K++ IP L D    L+++
Sbjct: 258 YC-KGANADIWVMKEFGEGESWSKLLSIPGLTDFVRPLWIS 297

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357495307|ref|XP_003617942.1| F-box/kelch-repeat protein [Medicago truncatula] gi|355519277|gb|AET00901.1| F-box/kelch-repeat protein [Medicago truncatula]

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 107/263 (40%), Gaps = 73/263 (27%)

Query: 19  GCCNGLLCIVVQIHEHAGEADLVLWNPWTGRYKTVPISVVGLTLDMYGFGYINTFGFCFD 78
           G C G + +      H G A   LWNP  G +K +P+S +    ++YGFGY        D
Sbjct: 220 GSCRGFILL------HCG-ACFYLWNPSIGHHKQIPLSPIDYIFNLYGFGY--------D 264

Query: 79  QSTNDYKIVRLV------NDDGITHFQIYSLNTNFWK----TGILP-----DRIHDTKER 123
            STNDY +V +       +DD ++H  ++ L    WK    T  LP       +    E 
Sbjct: 265 HSTNDYLVVSISRDQIPYSDDVLSHLWLFLLRATVWKEIACTTHLPFYTNVSSLVRQVES 324

Query: 124 F-----------RTIFSSVILCFSLVDDKFRVILLPDDV---AKGAEFDLFDFGGCLGLI 169
           F             I+  VI+ F L + K   ILLP D+   +KG  F +F      G +
Sbjct: 325 FFNGAIHWLALRHDIYDHVIVAFHLTERKLLEILLPIDINYNSKGCGFWVFR-----GFL 379

Query: 170 HCHARRRAHVDIWTRNEL----NWIKIMCIPRLEDVHSSLYLAPVFF------------- 212
                R  +VDIW   E     +W KI+ +P  +D+    Y  P+ +             
Sbjct: 380 SLWILRDDNVDIWVMKEYKVHSSWTKILVLPIYDDIP---YFCPLSYTKNGDIIGTDGGT 436

Query: 213 ----YSGAGEVLLHENDTYPSHG 231
               Y+  GE L H +    +HG
Sbjct: 437 GLVKYNDKGEFLEHNSYCEDAHG 459

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357473337|ref|XP_003606953.1| F-box protein [Medicago truncatula] gi|355508008|gb|AES89150.1| F-box protein [Medicago truncatula]

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 98/221 (44%), Gaps = 46/221 (20%)

Query: 17  LIGCCNGLLCI---VVQIHEHAGEADLVLWNPWTGRYKTVPISVVG----LTLDMYGFGY 69
           LIG CNGLL +   V+         ++ +WNP+TG+Y+ +P   +     L  D    G 
Sbjct: 99  LIGSCNGLLAMSHGVMAFTHPNAPNEIAIWNPYTGKYRIIPFLPLPIPNILQSDNPNRGC 158

Query: 70  INTFGFCFDQSTNDYKIVR------LVNDDGITHFQIYSLNTNFWKTGILPD-------- 115
           +   GF FD  + DYK++R      L N     H +++SL TN WK  I+P+        
Sbjct: 159 LCVHGFGFDSLSGDYKLLRISYLLDLQNPFYDPHVRLFSLKTNSWK--IIPNFPYALYYT 216

Query: 116 -----------RIHDTKERFRTIFSS-VILCFSLVDDKFRVILLPDDV-----AKGAEFD 158
                       +H    R    F S +IL F+L  + F  + LPD++     +K  +  
Sbjct: 217 RTMGVFVENSSSLHWVASRKIQPFQSDLILAFNLSLETFNEVPLPDEIGEQVNSKSFKIR 276

Query: 159 LFDFGGCLGLIHCHARRRAHVDIWTRNEL----NWIKIMCI 195
           + D GGCL +   +  +   +D+W   E     +W K+  +
Sbjct: 277 VADLGGCLCMTVDY--KDTKIDVWVMKEYGCRDSWCKLFTV 315

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|41687974|dbj|BAD08685.1| S haplotype-specific F-box protein 5 [Prunus avium]

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 131/298 (43%), Gaps = 43/298 (14%)

Query: 2   KARNLNFPLGKVLHQLI-GCCNGLLCIVVQIHEHAGEADLVLWNPWTGRYKTVPISVVGL 60
           +   L+ PLG   H  I G  NGL+CI  +I     ++ +++WNP   +++T P S   +
Sbjct: 94  ECSKLSHPLGSTEHYGIYGSSNGLVCISDEILNF--DSPILMWNPSVRKFRTAPTS-TNI 150

Query: 61  TLDMYGFGYINTFGFCFDQSTNDYKIVRLV--NDDGITHFQIYSLNTNFWKT-GILPDRI 117
            L    F Y+    F F  + NDYK+VR++  N D +   ++YSL T+ WK    +P  +
Sbjct: 151 NLK---FAYV-ALQFGFHHAVNDYKVVRMMRTNKDALA-VEVYSLRTDSWKMIEAIPPWL 205

Query: 118 HDTKERFR-TIFSSV------------ILCFSLVDDKFRVILLPDDVAK--GAEFDLFDF 162
             T +  R T F+ V            I+ F    ++F   + PD V    G   D+++ 
Sbjct: 206 KCTWQHHRGTFFNGVAYHIIQKGPIFSIMSFDSGSEEFEEFIAPDAVCSSWGLCIDVYND 265

Query: 163 GGCL--GLIHCHARRRAHVDIWTRNELNWIKI--MCIPRLEDVHSSLYLAPVFFYSGAGE 218
             CL  G   C       +D+W   E  W ++  +  P L D         +   S   E
Sbjct: 266 QICLLSGFYGCEDEGLDKIDLWVLQEKQWKELCPVIFPPLGDCDR------IIGISIGIE 319

Query: 219 VLLHENDTYPSHGKDVFYLYSLE-KKIFR---KFKIEGMEQFPFHIHMAYTPSLTLLT 272
           +L+ + D     G+   YL + E K++ +   K  +   ++  F   + YT SL LL 
Sbjct: 320 LLMEKKDFDKGVGE--LYLCNYESKQVLQTGIKLAVMKYDEIEFVFAITYTESLVLLN 375

Source: Prunus avium

Species: Prunus avium

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255583943|ref|XP_002532719.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223527546|gb|EEF29668.1| ubiquitin-protein ligase, putative [Ricinus communis]

 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 113/268 (42%), Gaps = 48/268 (17%)

Query: 16  QLIGCCNGLLCIVVQIHEHAGEADLVLWNPWTGRYKTVPISVVGLTLDMYGFGY----IN 71
           +++G CNGLLCI   +       D+ LWNP    ++ VP   + + L  Y FG     ++
Sbjct: 90  KILGSCNGLLCICNIVD------DIALWNPSIRAHRVVP--YLPVELKRY-FGMCSCRVS 140

Query: 72  TFGFCFDQSTNDYKIVRLVNDDGI------THFQIYSLNTNFWK--------------TG 111
            FGF +D S +DYK+VR+    G+      +  +++SL  N W+               G
Sbjct: 141 VFGFGYDLSNDDYKLVRIAQFGGVDRKSFESEVKVFSLRKNSWRRIADMPYCVLYPGENG 200

Query: 112 ILPD-RIH-DTKERFRTIFSSVILCFSLVDDKFRVILLPDDVAKGAEFDLFDFGGCLGLI 169
           I  +  +H    +   +  +  I+   L  + + V+  P+ V       +    GCL L+
Sbjct: 201 IYANGALHWLVSQDPDSTVADTIVALDLGVEDYHVVPKPEFVDMNCNMGVGVLQGCLSLL 260

Query: 170 HCHARRRAHVDIWTRNEL----NWIKIMCIPRLEDVHSSLYLAPVFFYSGAGEVLLHEND 225
                R   VD+W   E     +W K+  + RLE +     L P+ +     EVL+    
Sbjct: 261 --AYARSERVDVWVMEEYMVKESWSKLFSVARLEVIGILRSLKPLAYSKSGNEVLIE--- 315

Query: 226 TYPSHGKDVFYLYSLEKKIFRKFKIEGM 253
               H     + Y L++K      I+G+
Sbjct: 316 ----HDNVNLFWYDLKRKEVVNVWIQGV 339

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053103|ref|XP_002297705.1| predicted protein [Populus trichocarpa] gi|222844963|gb|EEE82510.1| predicted protein [Populus trichocarpa]

 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 77/308 (25%), Positives = 127/308 (41%), Gaps = 60/308 (19%)

Query: 16  QLIGCCNGLLCIVVQIHEHAGEADLVLWNPWTGRYKTVPISVVGLTLDMYGF---GYINT 72
           +++G CNGLL ++        +  + L+NP T   K +P+S + L  D+         N 
Sbjct: 92  EVMGSCNGLLALL------NSDFSIALYNPSTREKKMIPVSPLELPNDLDDSKVSSLFNF 145

Query: 73  FGFCFDQSTNDYKIVRLV-----NDDGITH--FQIYSLNTNFWKT---------GILPDR 116
           +GF  D    DYK+VR +     + DG  H   ++YSL +N WK           ILP  
Sbjct: 146 YGFGHDPINEDYKVVRFIHFYGDSPDGFFHCEVKVYSLKSNSWKRIDDYPYDLRFILPPD 205

Query: 117 IHDTKERFRTIF-------------------SSVILCFSLVDDKFRVILLPDDVAKGAEF 157
            H    R   +F                   S +I+ F L  ++F++I  PD  +   E 
Sbjct: 206 YHPRCRRGYGVFANSAVHWKATVVGKGKENGSDLIVAFDLGAEEFKIIPQPDYSSNEHEM 265

Query: 158 DLFDFGGCLGLIHCHARRRAHVDIWTRNEL----NWIKI-MCIPRLEDVHSSLYLAPVFF 212
           ++   GGCL  + C+ +    V+IW   E     +W  +   I +L+     L+  P+ +
Sbjct: 266 NVGVLGGCL-CVFCN-KNCKQVEIWVMKEYGVKESWTHLCTVIAQLQVKAFWLHARPLAY 323

Query: 213 YSGAGEVLLHENDTYPSHGKDVFYLYSLEKKIFRKFKIEGMEQFPFHIHMAYTPSLTLLT 272
             G  ++LL  ++ +       F  Y L ++  +  +I G    P  I      SL  L 
Sbjct: 324 SKGGDKILLELDNRF-------FVWYDLRRRKSKIIRIRGAP--PIFIAEICVGSLVTLN 374

Query: 273 RCRERDSS 280
              E  +S
Sbjct: 375 GGGEGQTS 382

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297809553|ref|XP_002872660.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] gi|297318497|gb|EFH48919.1| F-box family protein [Arabidopsis lyrata subsp. lyrata]

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 114/255 (44%), Gaps = 53/255 (20%)

Query: 16  QLIGCCNGLLCIVVQIHEHAGEADLVLWNPWTGRYKTVPISVVGLTLDMYGFGYINTFGF 75
           ++ G  NGL+ +           DL ++NP T +   +P S + L       GY+  +GF
Sbjct: 90  EVFGSSNGLIGL------SNSPTDLAVFNPSTRQIHRLPPSSIDLPDGSSTRGYV-FYGF 142

Query: 76  CFDQSTNDYKIVRLV-----NDDGIT-----HFQIYSLNTNFWKT--------------- 110
            +D  ++DYK+VR+V     +DD +        +++SL  N WK                
Sbjct: 143 GYDSVSDDYKVVRMVQFKIDSDDELGCSFPYEVKVFSLKKNSWKRVESVSTSSIRLLFYF 202

Query: 111 ----------GILP-DRIHDTKERFRTIFS-SVILCFSLVDDKFRVILLPDDVAKG---A 155
                     G+L  + +H    R   + + ++I+ F L  ++F ++  P+ VA G    
Sbjct: 203 YYHLLYRRGYGVLAGNSLHWVLPRRPGLIAFNLIVRFDLALEEFGIVRFPETVANGNVDI 262

Query: 156 EFDLFDFGGCLGLIHCHARRRAHVDIWTRNELN----WIKIMCIPRLEDVHSSLYLAPVF 211
           + D+    GCL L+ C+  +  +VD+W   E N    W K+  + + + V S  Y+ P+ 
Sbjct: 263 QMDISVLDGCLCLM-CNYDQE-YVDVWMMKEYNVRSSWTKVFTVQKPKSVKSFAYMRPLV 320

Query: 212 FYSGAGEVLLHENDT 226
           +     +VLL  N+T
Sbjct: 321 YSKDKDKVLLELNNT 335

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|207525601|gb|ACI24297.1| SFB [Prunus spinosa] gi|207525603|gb|ACI24298.1| SFB [Prunus spinosa] gi|207525605|gb|ACI24299.1| SFB [Prunus spinosa]

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 71/263 (26%), Positives = 115/263 (43%), Gaps = 37/263 (14%)

Query: 2   KARNLNFPLGKVLHQLIGCCNGLLCIVVQIHEHAGEADLVLWNPWTGRYKTVPISVVGLT 61
           +   L+ PLG   + + G  NGL+CI  +I     ++ L +WNP   +++T PIS     
Sbjct: 7   ECSKLSHPLGTKHYGIYGSSNGLVCISDEILNF--DSPLHIWNPSVKKFRTPPIST---N 61

Query: 62  LDMYGFGYINTFGFCFDQSTNDYKIVRLVNDDGIT-HFQIYSLNTNFWK--TGILPDRIH 118
           ++M  F  +    F F    NDYK VR+++ +      ++YSL T+ WK    I P    
Sbjct: 62  INM-KFSCV-ALQFGFHSGVNDYKAVRMMHTNKTALAVEVYSLRTDSWKMIEAIPPWLKC 119

Query: 119 DTKERFRTIFSSV------------ILCFSLVDDKFRVILLPDDVAKGAEF--DLFDFGG 164
             K    T F+ V            I+ F+   ++F   L PD + + AE   D++    
Sbjct: 120 AWKHHKGTFFNGVAYHIIQKGPLFSIMSFNSGSEEFEEFLAPDAICRPAELCIDVYKEQI 179

Query: 165 CL--GLIHCHARRRAHVDIWTRNELNWIKIMC--IPRLEDVHSSLYLAPVFFYSGAGEVL 220
           CL  G   C       +D+W   E  W K +C  +  L + H ++ +      S   E+L
Sbjct: 180 CLLFGFYDCEEEGMDKIDLWVLQEKRW-KQLCPFMFPLNNCHRTIGI------SADNELL 232

Query: 221 LHENDTYPSHGKDVFYLYSLEKK 243
           +   D   ++G    YL + E K
Sbjct: 233 MERRDF--TNGVIYLYLCNYESK 253

Source: Prunus spinosa

Species: Prunus spinosa

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297829150|ref|XP_002882457.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] gi|297328297|gb|EFH58716.1| F-box family protein [Arabidopsis lyrata subsp. lyrata]

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 105/229 (45%), Gaps = 35/229 (15%)

Query: 16  QLIGCCNGLLCIVVQIHEHAGEADLVLWNPWTGRYKTVPISVVGLTLDMYGFGYINTFGF 75
           +++G  NGL+CI        GE  ++L+NP TG  K +P ++   +++ YG     T+GF
Sbjct: 164 EIVGSSNGLVCI------SPGEGAVILYNPTTGDSKRLPETLRPKSVE-YGRDNFQTYGF 216

Query: 76  CFDQSTNDYKIVRLV-NDDGITHFQIYSLNTNFWK----------TGILPDRIHDTKERF 124
            FD  T+DYK+V+LV   D I    +YSL  + W+           G     +H      
Sbjct: 217 GFDDLTDDYKVVKLVATSDDILDASVYSLKADSWRRICNLNYEHNDGFYTSGVH-FNGAI 275

Query: 125 RTIFSS------VILCFSLVDDKFRVILLPDDVA----KGAEFDLFDFGGCLGLIH-CHA 173
             +F+       V++ F +  ++FR + LP +      + + F +    G L +++ C+ 
Sbjct: 276 HWVFAEISHGQRVVVAFDIQTEEFREMPLPVEAEDCHHRFSNFVVGSLNGRLCVVNSCY- 334

Query: 174 RRRAHVDIWTRNELNWIKIMCIPRLEDVHSSLYLAPVFFYSGAGEVLLH 222
               H DIW  +E   +K     R+  ++ S  + P+       EVLL 
Sbjct: 335 --EVHDDIWVMSEYGEVKSWSRIRINLLYRS--MKPLCSTKKDEEVLLE 379

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	281
TAIR|locus:2135615	413	CPR1 "AT4G12560" [Arabidopsis	0.338	0.230	0.288	2.1e-09
TAIR|locus:2082410	427	AT3G06240 "AT3G06240" [Arabido	0.697	0.459	0.266	2.2e-08
TAIR|locus:2203736	459	AT1G47340 "AT1G47340" [Arabido	0.768	0.470	0.260	2.1e-07
TAIR|locus:2076196	364	AT3G23880 "AT3G23880" [Arabido	0.672	0.519	0.254	1.1e-06
TAIR|locus:2127465	402	AT4G22390 "AT4G22390" [Arabido	0.398	0.278	0.226	5.1e-06
TAIR|locus:2199523	245	AT1G54640 "AT1G54640" [Arabido	0.274	0.314	0.294	4.1e-05
TAIR|locus:2094947	360	AT3G16210 "AT3G16210" [Arabido	0.459	0.358	0.262	5.8e-05
TAIR|locus:2091707	378	AT3G24580 "AT3G24580" [Arabido	0.313	0.232	0.313	0.00011
TAIR|locus:2035634	293	AT1G32600 "AT1G32600" [Arabido	0.427	0.409	0.256	0.00041

TAIR|locus:2135615 CPR1 "AT4G12560" [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
 Identities = 30/104 (28%), Positives = 55/104 (52%)

Query:   130 SVILCFSLVDDKFRVILLPDDVAKG---AEFDLFDFGGCLGLIHCHARRRAHVDIWTRNE 186
             ++I+ F L  ++F ++  P+ VA G    + D+    GCL L+ C+  + ++VD+W   E
Sbjct:   233 NLIVRFDLALEEFEIVRFPEAVANGNVDIQMDIGVLDGCLCLM-CNYDQ-SYVDVWMMKE 290

Query:   187 LN----WIKIMCIPRLEDVHSSLYLAPVFFYSGAGEVLLHENDT 226
              N    W K+  + + + V S  Y+ P+ +     +VLL  N+T
Sbjct:   291 YNVRDSWTKVFTVQKPKSVKSFSYMRPLVYSKDKKKVLLELNNT 334

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0031348 "negative regulation of defense response" evidence=IMP

GO:0042177 "negative regulation of protein catabolic process" evidence=IMP

TAIR|locus:2082410 AT3G06240 "AT3G06240" [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 2.2e-08, P = 2.2e-08
 Identities = 60/225 (26%), Positives = 99/225 (44%)

Query:    16 QLIGCCNGLLCIVVQIHEHAGEADLVLWNPWTGRYKTVPISVVGLTLDMYGFGYINTFGF 75
             +++G  NGL+CI        GE  + L+NP TG  K +P +    +++ Y      T+GF
Sbjct:   164 EIVGSSNGLVCI------SPGEGAVFLYNPTTGDSKRLPENFRPKSVE-YERDNFQTYGF 216

Query:    76 CFDQSTNDYKIVRLV-NDDGITHFQIYSLNTNFWKT----------GILPDRIHDTKERF 124
              FD  T+DYK+V+LV   + I    +YSL  + W+           G     +H      
Sbjct:   217 GFDGLTDDYKLVKLVATSEDILDASVYSLKADSWRRICNLNYEHNDGSYTSGVH-FNGAI 275

Query:   125 RTIFSS------VILCFSLVDDKFRVILLPDDVAKGAE-FDLFDFGGCLG-LIHCHARRR 176
               +F+       V++ F +  ++FR + +PD+    +  F  F  G   G L   ++   
Sbjct:   276 HWVFTESRHNQRVVVAFDIQTEEFREMPVPDEAEDCSHRFSNFVVGSLNGRLCVVNSCYD 335

Query:   177 AHVDIWTRNELNWIKIMCIPRLEDVHSSLYLAPVFFYSGAGEVLL 221
              H DIW  +E    K     R+  ++ S+   P+       EVLL
Sbjct:   336 VHDDIWVMSEYGEAKSWSRIRINLLYRSM--KPLCSTKNDEEVLL 378

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2203736 AT1G47340 "AT1G47340" [Arabidopsis thaliana (taxid:3702)]

 Score = 145 (56.1 bits), Expect = 2.1e-07, P = 2.1e-07
 Identities = 68/261 (26%), Positives = 113/261 (43%)

Query:    19 GCCNGLLCIV-VQIHEHAGEADLVLWNPWTGRYKTVPISVVGLTLDMYGFGYINTFGFCF 77
             G  +GL+    + I+EH  +   V+ NP TGRY ++P       L+ Y   + + FGF  
Sbjct:   146 GYASGLMYFYGMWINEHDYDGVPVICNPLTGRYASLPF------LERYRKAF-SFFGF-- 196

Query:    78 DQSTNDYKIVRLVNDDGITHFQIYSLNTN--FW-------KTGILPDRI---------HD 119
             D     YK++ +    G  H  + +  T    W       K  I+ D I          D
Sbjct:   197 DPIEKQYKVLFMAYPSGPDHHTVLTFGTGEMSWRKIECSVKHDIVSDGICINGVMYYLGD 256

Query:   120 TKERFRTIFSSVILCFSLVDDKFRVILLPDDVAKGAEFDLFDFGGCLGLIHC--HARRRA 177
             T E F T F  V++CF +  + F  I  P     G+  ++ ++ G LGL+ C  +     
Sbjct:   257 TSE-FMTAF--VVVCFDVRSETFSFIY-P-----GSYCEVINYKGKLGLVFCDDYTDDAI 307

Query:   178 HVDIWT---RNELNWIKIMCIPRLEDVHSSLYLAPVFFYSGAGEVLLHENDTYPSHGKDV 234
              + +W    + ++ W K     +L+D   S +   +   S AGE++L   D        V
Sbjct:   308 ELRLWVLEDKEKIEWSKYAY--KLKDEKFSAHYVSIVGVSAAGEIVLSMADFTSKQPFYV 365

Query:   235 FYLYSLEKKIFRKFKIEGMEQ 255
             FY Y+ E+   +  +I+G E+
Sbjct:   366 FY-YNPERNTLQCTEIQGFEE 385

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2076196 AT3G23880 "AT3G23880" [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 1.1e-06, P = 1.1e-06
 Identities = 56/220 (25%), Positives = 97/220 (44%)

Query:    10 LGKVLHQLIGCCNGLLCIVVQIHEHAGEADLVLWNPWTGRYKTVPISVVGLTLD----MY 65
             LG+  +Q++G C+GL+C  V       +  L LWNP     + +  S +  + D     Y
Sbjct:   105 LGRDYYQVVGTCHGLVCFHVDY-----DKSLYLWNPTIKLQQRLSSSDLETSDDECVVTY 159

Query:    66 GFGYINTFG----FCFDQSTNDYKIVRLVNDDGITHFQIYSLNTNFWKTGILPDR----- 116
             GFGY  +          Q  +  KI   +     T  +++  NT+F    ++ D+     
Sbjct:   160 GFGYDESEDDYKVVALLQQRHQVKIETKIYS---TRQKLWRSNTSFPSGVVVADKSRSGI 216

Query:   117 -IHDTKERFRTIFSS--VILCFSLVDDKFRVILLPDDVAKGA-EFDLFDFGGCLGLIHCH 172
              I+ T     T  SS   I+ + +  D+F+ +  P    +G     L D  GCL ++ C+
Sbjct:   217 YINGTLNWAATSSSSSWTIISYDMSRDEFKELPGPVCCGRGCFTMTLGDLRGCLSMV-CY 275

Query:   173 ARRRAHVDIWTRNEL----NWIKIMCIPRLEDVHSSLYLA 208
              +  A+ D+W   E     +W K++ IP L D    L+++
Sbjct:   276 CKG-ANADVWVMKEFGEVYSWSKLLSIPGLTDFVRPLWIS 314

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005634 "nucleus" evidence=IDA

TAIR|locus:2127465 AT4G22390 "AT4G22390" [Arabidopsis thaliana (taxid:3702)]

 Score = 101 (40.6 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
 Identities = 27/119 (22%), Positives = 56/119 (47%)

Query:   112 ILPDRIHDTKERFRTIFS-SVILCFSLVDDKFRVILLPDDVAKGAEFDLFDFGGCLGLIH 170
             ++ + +H    R + + + + I+ + L  D   V+  P ++      D+    GC+ L+ 
Sbjct:   213 VVNNHLHWILPRRQGVIAFNAIIKYDLASDDIGVLSFPQELYIEDNMDIGVLDGCVCLM- 271

Query:   171 CHARRRAHVDIWTRNEL----NWIKIMCIPRLEDVHSSLYLAPVFFYSGAGEVLLHEND 225
             C+    +HVD+W   E     +W K+  +P+ E V S  ++ P+       ++LL  N+
Sbjct:   272 CYDEY-SHVDVWVLKEYEDYKSWTKLYRVPKPESVESVEFIRPLICSKDRSKILLEINN 329

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2199523 AT1G54640 "AT1G54640" [Arabidopsis thaliana (taxid:3702)]

 Score = 120 (47.3 bits), Expect = 4.1e-05, P = 4.1e-05
 Identities = 28/95 (29%), Positives = 50/95 (52%)

Query:    21 CNGLLCIVVQIHEHAGEADLVLWNPWTGRYKTVPISVVGLTLDMYGFGYINTFGFCFDQS 80
             C G++C+ ++ +      DL +W P +  +K +P+ + G T ++ GFGY        D+ 
Sbjct:    48 CRGMMCLTLKENN-----DLAIWKPGSEEFKRIPMVIPGQTTNLLGFGY--------DRI 94

Query:    81 TNDYKIVRLVNDDGITHFQIYSLNTNFWKTGILPD 115
             +NDYKIV  +   G   + IY+   + W+  + PD
Sbjct:    95 SNDYKIVTKI---GFKTY-IYAFKESCWRESV-PD 124

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2094947 AT3G16210 "AT3G16210" [Arabidopsis thaliana (taxid:3702)]

 Score = 122 (48.0 bits), Expect = 5.8e-05, P = 5.8e-05
 Identities = 42/160 (26%), Positives = 72/160 (45%)

Query:     6 LNFPLGKVLHQLIGC---CNGLLCIVVQIHEHAGEADLVLWNPWTGRYKTVPISVVGLTL 62
             L+FPL + +     C   C+G LC+ ++ H       L++WNP++ ++K VP    G+  
Sbjct:    77 LDFPLDQSMIDESTCVLHCDGTLCVTLKNHT------LMVWNPFSKQFKIVPNP--GIYQ 128

Query:    63 DMYGFGYINTFGFCFDQSTNDYKIVRLVNDDGITHFQIYSLNTNFWKTGI---LPD-RIH 118
             D       N  GF +D   +DYK+V  ++   ++   ++   T  W   +    PD    
Sbjct:   129 DS------NILGFGYDPVHDDYKVVTFIDRLDVSTAHVFEFRTGSWGESLRISYPDWHYR 182

Query:   119 DTKERF----------RTIFSSVILCFSLVDDKFRVILLP 148
             D +  F          R+     ILCF+L   ++R + LP
Sbjct:   183 DRRGTFLDQYLYWIAYRSSADRFILCFNLSTHEYRKLPLP 222

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2091707 AT3G24580 "AT3G24580" [Arabidopsis thaliana (taxid:3702)]

 Score = 120 (47.3 bits), Expect = 0.00011, P = 0.00011
 Identities = 31/99 (31%), Positives = 55/99 (55%)

Query:    21 CNGLLCIVVQIHEHAGEADLVLWNPWTGRYKTVPISVVGLTLDMYGF--GYINTFGFCFD 78
             C+GLL  + + +E    A +VLWNP+ G+ + +  +     LDMY +  GY  +      
Sbjct:   107 CDGLLLCITEDNED--NAKVVLWNPYWGQTRWIESTNNFHKLDMYTYALGYKKS-----S 159

Query:    79 QSTNDYKIVRLVN-DDGITHFQIYSLNTNFWKT-GILPD 115
             +S+  YKI+R ++     + F+IY++N++ WK   + PD
Sbjct:   160 KSSRSYKILRFIDFSPTCSEFKIYNINSDSWKVLDVSPD 198

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2035634 AT1G32600 "AT1G32600" [Arabidopsis thaliana (taxid:3702)]

 Score = 113 (44.8 bits), Expect = 0.00041, P = 0.00041
 Identities = 39/152 (25%), Positives = 73/152 (48%)

Query:    21 CNGLLCIVVQIHEHAGEADLVLWNPWTGRYKTVPISVVGLTLDMYGFGYINTFGFCFDQS 80
             C G++C+  + +      +L +W P + ++K VP+   G T ++ GFGY        D+ 
Sbjct:    48 CRGVICLTRKDNN-----ELAIWKPTSTKFKRVPMIKRGQTQNLLGFGY--------DRV 94

Query:    81 TNDYKIVRLVNDDGITHFQIYSLNTNFWKTG-ILPDRIHDTKERFRTIFSSV-------- 131
              +DYKIV ++  D  T+  I++   + W+   ++P      KER  T+  +         
Sbjct:    95 LDDYKIVTII--DKKTY--IFTFKESSWRESKLIPSSDCFFKERTGTVVDNCMYWIANRF 150

Query:   132 -----ILCFSLVDDKFRVILLPDDVAKGAEFD 158
                  ILCF  V++++  + +P  +  G EF+
Sbjct:   151 NKEKFILCFDFVNEEYSKLNVPM-MLSGLEFN 181


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.328   0.144   0.470    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      281       281   0.00083  115 3  11 22  0.41    33
                                                     33  0.42    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  613 (65 KB)
  Total size of DFA:  234 KB (2127 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.77u 0.11s 21.88t   Elapsed:  00:00:01
  Total cpu time:  21.77u 0.11s 21.88t   Elapsed:  00:00:01
  Start:  Fri May 10 04:14:41 2013   End:  Fri May 10 04:14:42 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	281
TIGR01640	230	TIGR01640, F_box_assoc_1, F-box protein interactio	8e-19

>gnl|CDD|233502 TIGR01640, F_box_assoc_1, F-box protein interaction domain

 Score = 82.4 bits (204), Expect = 8e-19
 Identities = 46/253 (18%), Positives = 86/253 (33%), Gaps = 50/253 (19%)

Query: 18  IGCCNGLLCIVVQIHEHAGEADLVLWNPWTGRYKTVPISVVGLTLDM---YGFGYINTFG 74
           +  C+GL+C             LV+WNP TG+ + +P      +      Y  GY     
Sbjct: 1   VVPCDGLICFSY-------GKRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGY----- 48

Query: 75  FCFDQSTNDYKIVRLVNDDGITH---FQIYSLNTNFWKTGILPDRIHD------------ 119
              D     YK++   +  G  +    Q+Y+L +N W+T I     H             
Sbjct: 49  ---DPIEKQYKVLCFSDRSGNRNQSEHQVYTLGSNSWRT-IECSPPHHPLKSRGVCINGV 104

Query: 120 ----TKERFRTIFSSVILCFSLVDDKFRVILLPDDVAK--GAEFDLFDFGGCLGLIHCHA 173
                           I+ F +  ++F+  +              L ++ G L ++    
Sbjct: 105 LYYLAYTLKTNPD-YFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLK-QK 162

Query: 174 RRRAHVDIWTRN---ELNWIKIMCIPRLEDVHSSLYLAPVFFYSGAGEVLLHENDTYPSH 230
           +   + D+W  N   +  W K+  +P               F +  GE++L        +
Sbjct: 163 KDTNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGF-TDKGEIVLC---CEDEN 218

Query: 231 GKDVFYLYSLEKK 243
              +FY Y++ + 
Sbjct: 219 PFYIFY-YNVGEN 230

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. Length = 230

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	281
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	100.0
PF07734	164	FBA_1: F-box associated; InterPro: IPR006527 This	99.81
PF08268	129	FBA_3: F-box associated domain; InterPro: IPR01318	99.71
PHA02713	557	hypothetical protein; Provisional	98.11
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	98.03
PHA03098	534	kelch-like protein; Provisional	98.01
PLN02193	470	nitrile-specifier protein	97.94
PLN02153	341	epithiospecifier protein	97.91
PHA02790	480	Kelch-like protein; Provisional	97.63
PHA03098	534	kelch-like protein; Provisional	97.4
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.39
PHA02713	557	hypothetical protein; Provisional	97.39
PLN02153	341	epithiospecifier protein	97.36
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	97.18
PLN02193	470	nitrile-specifier protein	97.14
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	96.84
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	96.76
PHA02790	480	Kelch-like protein; Provisional	96.73
KOG1230	521	consensus Protein containing repeated kelch motifs	96.22
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	96.15
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	95.56
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	95.31
KOG4693	392	consensus Uncharacterized conserved protein, conta	94.14
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	93.68
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	93.27
PF07762	131	DUF1618: Protein of unknown function (DUF1618); In	91.88
KOG4693	392	consensus Uncharacterized conserved protein, conta	91.68
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	91.43
PF13964	50	Kelch_6: Kelch motif	88.79
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	88.56
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	86.7
KOG1230	521	consensus Protein containing repeated kelch motifs	85.42
PF02191	250	OLF: Olfactomedin-like domain; InterPro: IPR003112	84.83
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	80.02

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=100.00  E-value=2.5e-37  Score=266.27  Aligned_cols=204  Identities=23%  Similarity=0.436  Sum_probs=155.7

Q ss_pred             EEeecCeEeeeeeeccccCcceEEEEcCcCccceecCCCccCCC--c-ceeccCcccccceeeeCCCCceEEEEEEeCC-
Q 041236           18 IGCCNGLLCIVVQIHEHAGEADLVLWNPWTGRYKTVPISVVGLT--L-DMYGFGYINTFGFCFDQSTNDYKIVRLVNDD-   93 (281)
Q Consensus        18 ~~scnGLlcl~~~~~~~~~~~~~~V~NP~Tr~~~~LP~~~~~~~--~-~~~g~g~~~~~~l~~d~~~~~yKVv~~~~~~-   93 (281)
                      ++|||||||+..       ...++||||+||+++.||+++....  . ..+|||        ||+.+++||||++.... 
T Consensus         1 ~~sCnGLlc~~~-------~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G--------~d~~~~~YKVv~~~~~~~   65 (230)
T TIGR01640         1 VVPCDGLICFSY-------GKRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLG--------YDPIEKQYKVLCFSDRSG   65 (230)
T ss_pred             CcccceEEEEec-------CCcEEEECCCCCCEEecCCCCCcccccccceEEEe--------ecccCCcEEEEEEEeecC
Confidence            479999999876       3789999999999999987654211  1 146777        99999999999997742 


Q ss_pred             --CCcEEEEEEcCCCCccc-------------cccccce-EEeeeccCCcCceEEEEEECCCCeEE-EEeCCCCcCC-CC
Q 041236           94 --GITHFQIYSLNTNFWKT-------------GILPDRI-HDTKERFRTIFSSVILCFSLVDDKFR-VILLPDDVAK-GA  155 (281)
Q Consensus        94 --~~~~~eVys~~~~~Wr~-------------~v~~nG~-yWl~~~~~~~~~~~IlsFD~~~e~f~-~i~lP~~~~~-~~  155 (281)
                        ....++|||+++++||.             +|++||+ ||++..........|++||+++|+|+ .+++|..... ..
T Consensus        66 ~~~~~~~~Vys~~~~~Wr~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~  145 (230)
T TIGR01640        66 NRNQSEHQVYTLGSNSWRTIECSPPHHPLKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVD  145 (230)
T ss_pred             CCCCccEEEEEeCCCCccccccCCCCccccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCcccccccc
Confidence              35789999999999988             7899999 99997543212238999999999999 5999976532 13


Q ss_pred             eeEEEEeCCeEEE-EEecCCCCCeEEEEEEcC---CceeeEEEecCCCCcCccceeeeEEEEecCCcEEEEecCCCCCCC
Q 041236          156 EFDLFDFGGCLGL-IHCHARRRAHVDIWTRNE---LNWIKIMCIPRLEDVHSSLYLAPVFFYSGAGEVLLHENDTYPSHG  231 (281)
Q Consensus       156 ~~~L~~~~g~L~~-~~~~~~~~~~i~IWvL~~---~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~g~ill~~~~~~~~~~  231 (281)
                      ...|++++|+||+ ....  ....++||+|++   ..|+++++|+............+ +++.++|+|++...+ +  ..
T Consensus       146 ~~~L~~~~G~L~~v~~~~--~~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~-~~~~~~g~I~~~~~~-~--~~  219 (230)
T TIGR01640       146 YLSLINYKGKLAVLKQKK--DTNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFL-SGFTDKGEIVLCCED-E--NP  219 (230)
T ss_pred             ceEEEEECCEEEEEEecC--CCCcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeE-eEEeeCCEEEEEeCC-C--Cc
Confidence            4689999999999 4333  235699999997   67999999986433221112557 888899999999832 0  13


Q ss_pred             CcEEEEEECCCC
Q 041236          232 KDVFYLYSLEKK  243 (281)
Q Consensus       232 ~~~l~~Yd~~t~  243 (281)
                      .. +++||++++
T Consensus       220 ~~-~~~y~~~~~  230 (230)
T TIGR01640       220 FY-IFYYNVGEN  230 (230)
T ss_pred             eE-EEEEeccCC
Confidence            33 999999885

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants

Probab=99.81  E-value=1.9e-18  Score=141.26  Aligned_cols=152  Identities=22%  Similarity=0.349  Sum_probs=107.4

Q ss_pred             cccccce-EEeeeccCCcCceEEEEEECCCCeE-EEEeCCCCcC-CCCeeEEEEe-CCeEEE-EEecCCCCCeEEEEEEc
Q 041236          111 GILPDRI-HDTKERFRTIFSSVILCFSLVDDKF-RVILLPDDVA-KGAEFDLFDF-GGCLGL-IHCHARRRAHVDIWTRN  185 (281)
Q Consensus       111 ~v~~nG~-yWl~~~~~~~~~~~IlsFD~~~e~f-~~i~lP~~~~-~~~~~~L~~~-~g~L~~-~~~~~~~~~~i~IWvL~  185 (281)
                      +|++||+ ||++..........|++||+++|+| +.+++|.... ......|+++ +|+||+ .+..  ....++||+|+
T Consensus         1 gV~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~--~~~~~~IWvm~   78 (164)
T PF07734_consen    1 GVFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCD--ETSKIEIWVMK   78 (164)
T ss_pred             CEEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEecc--CCccEEEEEEe
Confidence            6899999 9999876543334899999999999 8899998765 2356788766 589999 4443  25679999999


Q ss_pred             C-----CceeeEEEecCCCCcCcccee-eeEEEEecCCcEEEEecCCCCCCC-CcEEEEEECCCCeEEEEEEecCCCCCc
Q 041236          186 E-----LNWIKIMCIPRLEDVHSSLYL-APVFFYSGAGEVLLHENDTYPSHG-KDVFYLYSLEKKIFRKFKIEGMEQFPF  258 (281)
Q Consensus       186 ~-----~~W~~~~~i~~~~~~~~~~~~-~~~~~~~~~g~ill~~~~~~~~~~-~~~l~~Yd~~t~~~~~i~~~~~~~~~~  258 (281)
                      +     .+|+|.++|+..........+ .+.+.+.+++++++..+....... . .+++|+ +++.++++.+.... ..+
T Consensus        79 ~~~~~~~SWtK~~~i~~~~~~~~~~~~~~~~~~i~~~~~vlv~~~~~~~~~~~~-~i~i~g-~~~~~~~~~~~~~~-~~~  155 (164)
T PF07734_consen   79 KYGYGKESWTKLFTIDLPPLPSLFFHFRNPSFFIDEEKKVLVCCDKETQREEKN-KIYIVG-EDGKFIEVDIEDKS-SCW  155 (164)
T ss_pred             eeccCcceEEEEEEEecCCCCCcccccccceEEEeCCCeEEEEEcCCCCcccee-EEEEEc-CCCEEEEcccccCC-CCC
Confidence            5     689999999976653322111 222556677788887643211011 3 388998 88999999874322 125


Q ss_pred             eEEEEeecC
Q 041236          259 HIHMAYTPS  267 (281)
Q Consensus       259 ~~~~~Y~eS  267 (281)
                      ..+..|+||
T Consensus       156 ~~~~~YvpS  164 (164)
T PF07734_consen  156 PSICNYVPS  164 (164)
T ss_pred             CCEEEECCC
Confidence            677899997

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants

Probab=99.71  E-value=2.5e-16  Score=123.55  Aligned_cols=111  Identities=22%  Similarity=0.347  Sum_probs=82.4

Q ss_pred             cccccce-EEeeeccCCcCceEEEEEECCCCeEEEEeCCCCc-CCCCeeEEEEeCCeEEEEEecC-CCCCeEEEEEEcC-
Q 041236          111 GILPDRI-HDTKERFRTIFSSVILCFSLVDDKFRVILLPDDV-AKGAEFDLFDFGGCLGLIHCHA-RRRAHVDIWTRNE-  186 (281)
Q Consensus       111 ~v~~nG~-yWl~~~~~~~~~~~IlsFD~~~e~f~~i~lP~~~-~~~~~~~L~~~~g~L~~~~~~~-~~~~~i~IWvL~~-  186 (281)
                      |+++||+ ||++... ......|+|||+++|+|+.|++|... .......|.+++|+||+..... .....++||+|+| 
T Consensus         1 gicinGvly~~a~~~-~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~   79 (129)
T PF08268_consen    1 GICINGVLYWLAWSE-DSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDY   79 (129)
T ss_pred             CEEECcEEEeEEEEC-CCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeecc
Confidence            6899999 9999862 23578999999999999999999222 2225689999999999944331 1135799999998 


Q ss_pred             --CceeeEEEe-cCCCC-cCccceeeeEEEEecCCcEEEEe
Q 041236          187 --LNWIKIMCI-PRLED-VHSSLYLAPVFFYSGAGEVLLHE  223 (281)
Q Consensus       187 --~~W~~~~~i-~~~~~-~~~~~~~~~~~~~~~~g~ill~~  223 (281)
                        ++|++.+.+ +.... ......+.+ +++.++|+|++..
T Consensus        80 ~k~~Wsk~~~~lp~~~~~~~~~~~~~~-~g~~~~Geiv~~~  119 (129)
T PF08268_consen   80 EKQEWSKKHIVLPPSWQHFVHDCDFSF-VGVTDTGEIVFAS  119 (129)
T ss_pred             ccceEEEEEEECChHHhcccCCcEEEE-EEEcCCCEEEEEE
Confidence              789998664 33322 112256777 8899999998883

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>PHA02713 hypothetical protein; Provisional

Probab=98.11  E-value=0.00031  Score=68.25  Aligned_cols=207  Identities=8%  Similarity=0.033  Sum_probs=118.6

Q ss_pred             EEeecCeEeeeeeec-cccCcceEEEEcCcCccceecCCCccCCCc-ceeccCcccccceeeeCCCCceEEEEEEeCC--
Q 041236           18 IGCCNGLLCIVVQIH-EHAGEADLVLWNPWTGRYKTVPISVVGLTL-DMYGFGYINTFGFCFDQSTNDYKIVRLVNDD--   93 (281)
Q Consensus        18 ~~scnGLlcl~~~~~-~~~~~~~~~V~NP~Tr~~~~LP~~~~~~~~-~~~g~g~~~~~~l~~d~~~~~yKVv~~~~~~--   93 (281)
                      ....+|-|.+..+.. +......+..+||.|.+|..+|+-+..... ....+          +.     ||..+...+  
T Consensus       299 ~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~----------~g-----~IYviGG~~~~  363 (557)
T PHA02713        299 SAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI----------DD-----TIYAIGGQNGT  363 (557)
T ss_pred             EEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE----------CC-----EEEEECCcCCC
Confidence            445677666554321 111235688999999999999875543211 11111          11     222221111  


Q ss_pred             -CCcEEEEEEcCCCCccc------------cccccce-EEeeeccCC------------------cCceEEEEEECCCCe
Q 041236           94 -GITHFQIYSLNTNFWKT------------GILPDRI-HDTKERFRT------------------IFSSVILCFSLVDDK  141 (281)
Q Consensus        94 -~~~~~eVys~~~~~Wr~------------~v~~nG~-yWl~~~~~~------------------~~~~~IlsFD~~~e~  141 (281)
                       ....+|+|+..+++|..            .+.++|. |-+......                  .....+.+||.++++
T Consensus       364 ~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~  443 (557)
T PHA02713        364 NVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNI  443 (557)
T ss_pred             CCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCe
Confidence             12468999999999977            4577888 876543210                  013469999999999


Q ss_pred             EEEE-eCCCCcCCCCeeEEEEeCCeEEE-EEecCCCCCeEEEEEEc--C-CceeeEEEecCCCCcCccceeeeEEEEecC
Q 041236          142 FRVI-LLPDDVAKGAEFDLFDFGGCLGL-IHCHARRRAHVDIWTRN--E-LNWIKIMCIPRLEDVHSSLYLAPVFFYSGA  216 (281)
Q Consensus       142 f~~i-~lP~~~~~~~~~~L~~~~g~L~~-~~~~~~~~~~i~IWvL~--~-~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~  216 (281)
                      |..+ ++|...   ....+..++|+|++ ..........-.+-..+  . ..|+..-.++....      ... ++ .-+
T Consensus       444 W~~v~~m~~~r---~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~------~~~-~~-~~~  512 (557)
T PHA02713        444 WETLPNFWTGT---IRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS------ALH-TI-LHD  512 (557)
T ss_pred             EeecCCCCccc---ccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc------cce-eE-EEC
Confidence            9987 444332   23567899999998 33221011111233343  2 47998776655432      111 22 236


Q ss_pred             CcEEEEecCCCCCCCCcEEEEEECCCCeEEEEEEecCC
Q 041236          217 GEVLLHENDTYPSHGKDVFYLYSLEKKIFRKFKIEGME  254 (281)
Q Consensus       217 g~ill~~~~~~~~~~~~~l~~Yd~~t~~~~~i~~~~~~  254 (281)
                      |+|++.-...   +.. .+-.||++|++|..+.-+...
T Consensus       513 ~~iyv~Gg~~---~~~-~~e~yd~~~~~W~~~~~~~~~  546 (557)
T PHA02713        513 NTIMMLHCYE---SYM-LQDTFNVYTYEWNHICHQHSN  546 (557)
T ss_pred             CEEEEEeeec---cee-ehhhcCcccccccchhhhcCC
Confidence            6776664210   112 377999999999999666543

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=98.03  E-value=0.0006  Score=66.34  Aligned_cols=212  Identities=12%  Similarity=0.113  Sum_probs=126.5

Q ss_pred             cCCeEEEeecCeEeeeeeec-cccCcceEEEEcCcCccceecCCCccCCCcceeccCcccccceeeeCCCCceEEEEEEe
Q 041236           13 VLHQLIGCCNGLLCIVVQIH-EHAGEADLVLWNPWTGRYKTVPISVVGLTLDMYGFGYINTFGFCFDQSTNDYKIVRLVN   91 (281)
Q Consensus        13 ~~~~i~~scnGLlcl~~~~~-~~~~~~~~~V~NP~Tr~~~~LP~~~~~~~~~~~g~g~~~~~~l~~d~~~~~yKVv~~~~   91 (281)
                      +...-+...+|.|....+.. +.........+||.|.+|..+|+-....    .++|        --  +-+.+|..+.-
T Consensus       323 r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R----~~~~--------v~--~l~g~iYavGG  388 (571)
T KOG4441|consen  323 RCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKR----SDFG--------VA--VLDGKLYAVGG  388 (571)
T ss_pred             cccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCcc----ccce--------eE--EECCEEEEEec
Confidence            33455667888887766544 2224578999999999999998766532    2222        00  00122222222


Q ss_pred             CC---CCcEEEEEEcCCCCccc------------cccccce-EEeeeccCCc-CceEEEEEECCCCeEEEE-eCCCCcCC
Q 041236           92 DD---GITHFQIYSLNTNFWKT------------GILPDRI-HDTKERFRTI-FSSVILCFSLVDDKFRVI-LLPDDVAK  153 (281)
Q Consensus        92 ~~---~~~~~eVys~~~~~Wr~------------~v~~nG~-yWl~~~~~~~-~~~~IlsFD~~~e~f~~i-~lP~~~~~  153 (281)
                      .+   .-..+|.|+..++.|..            .+.++|. |=+....... ....+.+||..+++|+.+ +++...  
T Consensus       389 ~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R--  466 (571)
T KOG4441|consen  389 FDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRR--  466 (571)
T ss_pred             cccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccccc--
Confidence            11   23469999999999977            5678888 8776543322 347899999999999987 555443  


Q ss_pred             CCeeEEEEeCCeEEE-EEecC-CCCCeEEEEEEcCCceeeEEEecCCCCcCccceeeeEEEEecCCcEEEEecCCCCCCC
Q 041236          154 GAEFDLFDFGGCLGL-IHCHA-RRRAHVDIWTRNELNWIKIMCIPRLEDVHSSLYLAPVFFYSGAGEVLLHENDTYPSHG  231 (281)
Q Consensus       154 ~~~~~L~~~~g~L~~-~~~~~-~~~~~i~IWvL~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~g~ill~~~~~~~~~~  231 (281)
                       ....+..++|.|++ ..... ....+++..--+...|+....+......     ..  + +..++++++.-.......-
T Consensus       467 -~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~-----~g--~-~~~~~~ly~vGG~~~~~~l  537 (571)
T KOG4441|consen  467 -SGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSA-----VG--V-VVLGGKLYAVGGFDGNNNL  537 (571)
T ss_pred             -ccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccccc-----cc--E-EEECCEEEEEecccCcccc
Confidence             34568999999998 33221 1122333222222889998444333220     11  1 2234455555321111122


Q ss_pred             CcEEEEEECCCCeEEEEEE
Q 041236          232 KDVFYLYSLEKKIFRKFKI  250 (281)
Q Consensus       232 ~~~l~~Yd~~t~~~~~i~~  250 (281)
                      . ++-.||+++++|+...-
T Consensus       538 ~-~ve~ydp~~d~W~~~~~  555 (571)
T KOG4441|consen  538 N-TVECYDPETDTWTEVTE  555 (571)
T ss_pred             c-eeEEcCCCCCceeeCCC
Confidence            3 58899999999999833

>PHA03098 kelch-like protein; Provisional

Probab=98.01  E-value=0.0013  Score=63.40  Aligned_cols=186  Identities=13%  Similarity=0.113  Sum_probs=105.7

Q ss_pred             ceEEEEcCcCccceecCCCccCCCcceeccCcccccceeeeCCCCceEEEEEEeCC---CCcEEEEEEcCCCCccc----
Q 041236           38 ADLVLWNPWTGRYKTVPISVVGLTLDMYGFGYINTFGFCFDQSTNDYKIVRLVNDD---GITHFQIYSLNTNFWKT----  110 (281)
Q Consensus        38 ~~~~V~NP~Tr~~~~LP~~~~~~~~~~~g~g~~~~~~l~~d~~~~~yKVv~~~~~~---~~~~~eVys~~~~~Wr~----  110 (281)
                      ..++.+||.|++|..+|+.+.....  ++..       +.+     =+|..+.-.+   ....+++|+..+++|+.    
T Consensus       311 ~~v~~yd~~~~~W~~~~~~~~~R~~--~~~~-------~~~-----~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l  376 (534)
T PHA03098        311 NSVVSYDTKTKSWNKVPELIYPRKN--PGVT-------VFN-----NRIYVIGGIYNSISLNTVESWKPGESKWREEPPL  376 (534)
T ss_pred             ccEEEEeCCCCeeeECCCCCccccc--ceEE-------EEC-----CEEEEEeCCCCCEecceEEEEcCCCCceeeCCCc
Confidence            4789999999999999875532211  1100       011     0122221111   13468899999999987    


Q ss_pred             --------cccccce-EEeeeccCC-cCceEEEEEECCCCeEEEE-eCCCCcCCCCeeEEEEeCCeEEEE-EecCCCC--
Q 041236          111 --------GILPDRI-HDTKERFRT-IFSSVILCFSLVDDKFRVI-LLPDDVAKGAEFDLFDFGGCLGLI-HCHARRR--  176 (281)
Q Consensus       111 --------~v~~nG~-yWl~~~~~~-~~~~~IlsFD~~~e~f~~i-~lP~~~~~~~~~~L~~~~g~L~~~-~~~~~~~--  176 (281)
                              .+.++|. |-+...... .....+..||+.+++|..+ ++|...   ........+|+|.+. .......  
T Consensus       377 p~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r---~~~~~~~~~~~iyv~GG~~~~~~~~  453 (534)
T PHA03098        377 IFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISH---YGGCAIYHDGKIYVIGGISYIDNIK  453 (534)
T ss_pred             CcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccc---cCceEEEECCEEEEECCccCCCCCc
Confidence                    3556777 765442211 1235789999999999987 344332   223456778999882 2211011  


Q ss_pred             CeEEEEEEcC--CceeeEEEecCCCCcCccceeeeEEEEecCCcEEEEecCCCCCCCCcEEEEEECCCCeEEEEE
Q 041236          177 AHVDIWTRNE--LNWIKIMCIPRLEDVHSSLYLAPVFFYSGAGEVLLHENDTYPSHGKDVFYLYSLEKKIFRKFK  249 (281)
Q Consensus       177 ~~i~IWvL~~--~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~g~ill~~~~~~~~~~~~~l~~Yd~~t~~~~~i~  249 (281)
                      ..-.+|+.+-  ..|+++-.++...      .... .+. -+|+|++.-......... .+..||+++++|+.+.
T Consensus       454 ~~~~v~~yd~~~~~W~~~~~~~~~r------~~~~-~~~-~~~~iyv~GG~~~~~~~~-~v~~yd~~~~~W~~~~  519 (534)
T PHA03098        454 VYNIVESYNPVTNKWTELSSLNFPR------INAS-LCI-FNNKIYVVGGDKYEYYIN-EIEVYDDKTNTWTLFC  519 (534)
T ss_pred             ccceEEEecCCCCceeeCCCCCccc------ccce-EEE-ECCEEEEEcCCcCCcccc-eeEEEeCCCCEEEecC
Confidence            1223777765  8899864333221      1112 222 356776654210000123 4999999999999883

>PLN02193 nitrile-specifier protein

Probab=97.94  E-value=0.0026  Score=60.52  Aligned_cols=196  Identities=11%  Similarity=0.051  Sum_probs=105.8

Q ss_pred             ceEEEEcCcCccceecCCCccCCCcceeccCcccccceeeeCCCCceEEEEEEeCC---CCcEEEEEEcCCCCccc----
Q 041236           38 ADLVLWNPWTGRYKTVPISVVGLTLDMYGFGYINTFGFCFDQSTNDYKIVRLVNDD---GITHFQIYSLNTNFWKT----  110 (281)
Q Consensus        38 ~~~~V~NP~Tr~~~~LP~~~~~~~~~~~g~g~~~~~~l~~d~~~~~yKVv~~~~~~---~~~~~eVys~~~~~Wr~----  110 (281)
                      ..++++||.|++|..+|+..........+..     ..+++.     |+..+.-.+   ....+++|++.+++|+.    
T Consensus       193 ~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~-----~v~~~~-----~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~  262 (470)
T PLN02193        193 KHLYVFDLETRTWSISPATGDVPHLSCLGVR-----MVSIGS-----TLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPV  262 (470)
T ss_pred             CcEEEEECCCCEEEeCCCCCCCCCCcccceE-----EEEECC-----EEEEECCCCCCCCCccEEEEECCCCEEEEcCcC
Confidence            4689999999999988653211000000000     000110     122121101   12468899999999975    


Q ss_pred             -----------cccccce-EEeeeccCCcCceEEEEEECCCCeEEEEeCCCCcC-CCCeeEEEEeCCeEEE-EEecCCCC
Q 041236          111 -----------GILPDRI-HDTKERFRTIFSSVILCFSLVDDKFRVILLPDDVA-KGAEFDLFDFGGCLGL-IHCHARRR  176 (281)
Q Consensus       111 -----------~v~~nG~-yWl~~~~~~~~~~~IlsFD~~~e~f~~i~lP~~~~-~~~~~~L~~~~g~L~~-~~~~~~~~  176 (281)
                                 .+.+++. |-+...........+.+||+.+.+|..++.|.... ......+..++|++++ .-..  ..
T Consensus       263 ~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~--g~  340 (470)
T PLN02193        263 EEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFN--GC  340 (470)
T ss_pred             CCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCC--CC
Confidence                       2345666 66544221112346889999999999886553221 1123456778899988 3222  12


Q ss_pred             CeEEEEEEcC--CceeeEEEecCCCCcCccceeeeEEEEecCCcEEEEecCCC-C--------CCCCcEEEEEECCCCeE
Q 041236          177 AHVDIWTRNE--LNWIKIMCIPRLEDVHSSLYLAPVFFYSGAGEVLLHENDTY-P--------SHGKDVFYLYSLEKKIF  245 (281)
Q Consensus       177 ~~i~IWvL~~--~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~g~ill~~~~~~-~--------~~~~~~l~~Yd~~t~~~  245 (281)
                      ..-++|+++-  ..|+++-.+......   +..+. .. .-+++|++.-.... .        ..... ++.||+.|++|
T Consensus       341 ~~~dv~~yD~~t~~W~~~~~~g~~P~~---R~~~~-~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~nd-v~~~D~~t~~W  414 (470)
T PLN02193        341 EVDDVHYYDPVQDKWTQVETFGVRPSE---RSVFA-SA-AVGKHIVIFGGEIAMDPLAHVGPGQLTDG-TFALDTETLQW  414 (470)
T ss_pred             ccCceEEEECCCCEEEEeccCCCCCCC---cceeE-EE-EECCEEEEECCccCCccccccCccceecc-EEEEEcCcCEE
Confidence            2356777765  889987554221111   12222 22 23456665542100 0        00124 89999999999


Q ss_pred             EEEEEe
Q 041236          246 RKFKIE  251 (281)
Q Consensus       246 ~~i~~~  251 (281)
                      +.+...
T Consensus       415 ~~~~~~  420 (470)
T PLN02193        415 ERLDKF  420 (470)
T ss_pred             EEcccC
Confidence            998543

>PLN02153 epithiospecifier protein

Probab=97.91  E-value=0.0062  Score=55.38  Aligned_cols=235  Identities=11%  Similarity=0.053  Sum_probs=119.0

Q ss_pred             ceeeecC-----CCCCcCCeEEEeecCeEeeeeeeccc--cCcceEEEEcCcCccceecCCCccCCCcceeccCcccccc
Q 041236            2 KARNLNF-----PLGKVLHQLIGCCNGLLCIVVQIHEH--AGEADLVLWNPWTGRYKTVPISVVGLTLDMYGFGYINTFG   74 (281)
Q Consensus         2 ~~~~~~~-----p~~~~~~~i~~scnGLlcl~~~~~~~--~~~~~~~V~NP~Tr~~~~LP~~~~~~~~~~~g~g~~~~~~   74 (281)
                      .|.++.-     |- ++...-+...++-|.+.......  .....++++||.+++|..+|+..........++.     .
T Consensus         8 ~W~~~~~~~~~~P~-pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~-----~   81 (341)
T PLN02153          8 GWIKVEQKGGKGPG-PRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVR-----M   81 (341)
T ss_pred             eEEEecCCCCCCCC-CCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceE-----E
Confidence            3666654     32 33333344567766665432111  1135799999999999998754211100001111     0


Q ss_pred             eeeeCCCCceEEEEEEeCC---CCcEEEEEEcCCCCccc-----------------cccccce-EEeeeccCCc------
Q 041236           75 FCFDQSTNDYKIVRLVNDD---GITHFQIYSLNTNFWKT-----------------GILPDRI-HDTKERFRTI------  127 (281)
Q Consensus        75 l~~d~~~~~yKVv~~~~~~---~~~~~eVys~~~~~Wr~-----------------~v~~nG~-yWl~~~~~~~------  127 (281)
                      .+++     =||..+.-.+   ....+++|+..+++|+.                 .+..+|. |-+.......      
T Consensus        82 ~~~~-----~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~  156 (341)
T PLN02153         82 VAVG-----TKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPE  156 (341)
T ss_pred             EEEC-----CEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCc
Confidence            0011     1222221111   12368889999999974                 2455666 6554322110      


Q ss_pred             CceEEEEEECCCCeEEEEeCCCCc-CCCCeeEEEEeCCeEEE-EEecC-------CCCCeEEEEEEcC--CceeeEEEec
Q 041236          128 FSSVILCFSLVDDKFRVILLPDDV-AKGAEFDLFDFGGCLGL-IHCHA-------RRRAHVDIWTRNE--LNWIKIMCIP  196 (281)
Q Consensus       128 ~~~~IlsFD~~~e~f~~i~lP~~~-~~~~~~~L~~~~g~L~~-~~~~~-------~~~~~i~IWvL~~--~~W~~~~~i~  196 (281)
                      ....+.+||+.+.+|..++.+... .......+..++|+|++ .....       .....-+||+++-  ..|+++-...
T Consensus       157 ~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g  236 (341)
T PLN02153        157 RFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTG  236 (341)
T ss_pred             ccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccC
Confidence            113588999999999987543211 11123456778999988 22110       0011124566653  8899865432


Q ss_pred             CCCCcCccceeeeEEEEecCCcEEEEecCCCC--------C-CCCcEEEEEECCCCeEEEEEEecC
Q 041236          197 RLEDVHSSLYLAPVFFYSGAGEVLLHENDTYP--------S-HGKDVFYLYSLEKKIFRKFKIEGM  253 (281)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~g~ill~~~~~~~--------~-~~~~~l~~Yd~~t~~~~~i~~~~~  253 (281)
                      ....   .+..+. ..+ -+++|++.-.....        . .... ++.||+++++|+.+...+.
T Consensus       237 ~~P~---~r~~~~-~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~n~-v~~~d~~~~~W~~~~~~~~  296 (341)
T PLN02153        237 AKPS---ARSVFA-HAV-VGKYIIIFGGEVWPDLKGHLGPGTLSNE-GYALDTETLVWEKLGECGE  296 (341)
T ss_pred             CCCC---Ccceee-eEE-ECCEEEEECcccCCcccccccccccccc-EEEEEcCccEEEeccCCCC
Confidence            1111   111222 222 24566655321000        0 0124 8999999999999864433

>PHA02790 Kelch-like protein; Provisional

Probab=97.63  E-value=0.0076  Score=57.56  Aligned_cols=195  Identities=9%  Similarity=-0.039  Sum_probs=108.5

Q ss_pred             eecCeEeeeeeeccccCcceEEEEcCcCccceecCCCccCCCcceeccCcccccceeeeCCCCceEEEEEEeCCCCcEEE
Q 041236           20 CCNGLLCIVVQIHEHAGEADLVLWNPWTGRYKTVPISVVGLTLDMYGFGYINTFGFCFDQSTNDYKIVRLVNDDGITHFQ   99 (281)
Q Consensus        20 scnGLlcl~~~~~~~~~~~~~~V~NP~Tr~~~~LP~~~~~~~~~~~g~g~~~~~~l~~d~~~~~yKVv~~~~~~~~~~~e   99 (281)
                      ..+|.|.+..+..+.........+||.+++|..+|+.+.....  ++..       +.|     =+|..+...++...++
T Consensus       269 ~~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~--~~~v-------~~~-----~~iYviGG~~~~~sve  334 (480)
T PHA02790        269 HVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLY--ASGV-------PAN-----NKLYVVGGLPNPTSVE  334 (480)
T ss_pred             EECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhc--ceEE-------EEC-----CEEEEECCcCCCCceE
Confidence            3566555544322111234678899999999999876543211  1100       011     1222222111223578


Q ss_pred             EEEcCCCCccc------------cccccce-EEeeeccCCcCceEEEEEECCCCeEEEEeCCCCcCCCCeeEEEEeCCeE
Q 041236          100 IYSLNTNFWKT------------GILPDRI-HDTKERFRTIFSSVILCFSLVDDKFRVILLPDDVAKGAEFDLFDFGGCL  166 (281)
Q Consensus       100 Vys~~~~~Wr~------------~v~~nG~-yWl~~~~~~~~~~~IlsFD~~~e~f~~i~lP~~~~~~~~~~L~~~~g~L  166 (281)
                      .|+..+++|..            .+.++|. |=+.....  ....+.+||..+++|..++.++...  .......++|+|
T Consensus       335 ~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~--~~~~ve~ydp~~~~W~~~~~m~~~r--~~~~~~~~~~~I  410 (480)
T PHA02790        335 RWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSE--TDTTTEYLLPNHDQWQFGPSTYYPH--YKSCALVFGRRL  410 (480)
T ss_pred             EEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCC--CCccEEEEeCCCCEEEeCCCCCCcc--ccceEEEECCEE
Confidence            89999999977            5677888 87655321  2346789999999999874433222  234567889999


Q ss_pred             EEEEecCCCCCeEEEEEEcCCceeeEEEecCCCCcCccceeeeEEEEecCCcEEEEecCCCCCCCCcEEEEEECCCCeEE
Q 041236          167 GLIHCHARRRAHVDIWTRNELNWIKIMCIPRLEDVHSSLYLAPVFFYSGAGEVLLHENDTYPSHGKDVFYLYSLEKKIFR  246 (281)
Q Consensus       167 ~~~~~~~~~~~~i~IWvL~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~g~ill~~~~~~~~~~~~~l~~Yd~~t~~~~  246 (281)
                      .+...      ..++.-.+...|+..-.++....      ... .++ -+|+|++.-...-.+... .+-.||+++++|+
T Consensus       411 Yv~GG------~~e~ydp~~~~W~~~~~m~~~r~------~~~-~~v-~~~~IYviGG~~~~~~~~-~ve~Yd~~~~~W~  475 (480)
T PHA02790        411 FLVGR------NAEFYCESSNTWTLIDDPIYPRD------NPE-LII-VDNKLLLIGGFYRGSYID-TIEVYNNRTYSWN  475 (480)
T ss_pred             EEECC------ceEEecCCCCcEeEcCCCCCCcc------ccE-EEE-ECCEEEEECCcCCCcccc-eEEEEECCCCeEE
Confidence            88321      12222222388997654433221      122 222 455776664110000113 4889999999997


Q ss_pred             E
Q 041236          247 K  247 (281)
Q Consensus       247 ~  247 (281)
                      .
T Consensus       476 ~  476 (480)
T PHA02790        476 I  476 (480)
T ss_pred             e
Confidence            5

>PHA03098 kelch-like protein; Provisional

Probab=97.40  E-value=0.0074  Score=58.26  Aligned_cols=178  Identities=13%  Similarity=0.098  Sum_probs=99.5

Q ss_pred             eeeecCCCCCcCCeEEEeecCeEeeeeeeccccCcceEEEEcCcCccceecCCCccCCCcceeccCcccccceeeeCCCC
Q 041236            3 ARNLNFPLGKVLHQLIGCCNGLLCIVVQIHEHAGEADLVLWNPWTGRYKTVPISVVGLTLDMYGFGYINTFGFCFDQSTN   82 (281)
Q Consensus         3 ~~~~~~p~~~~~~~i~~scnGLlcl~~~~~~~~~~~~~~V~NP~Tr~~~~LP~~~~~~~~~~~g~g~~~~~~l~~d~~~~   82 (281)
                      |..++-...++...-+...+|-|.+..+..+......+.++||.|++|..+|+.+.....  ++..       ..+   +
T Consensus       323 W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~--~~~~-------~~~---~  390 (534)
T PHA03098        323 WNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYN--PCVV-------NVN---N  390 (534)
T ss_pred             eeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCcc--ceEE-------EEC---C
Confidence            555543333333344456677666555422211245788999999999999765543211  0000       011   1


Q ss_pred             ceEEEEEEeC--C--CCcEEEEEEcCCCCccc------------cccccce-EEeeeccCCc---CceEEEEEECCCCeE
Q 041236           83 DYKIVRLVND--D--GITHFQIYSLNTNFWKT------------GILPDRI-HDTKERFRTI---FSSVILCFSLVDDKF  142 (281)
Q Consensus        83 ~yKVv~~~~~--~--~~~~~eVys~~~~~Wr~------------~v~~nG~-yWl~~~~~~~---~~~~IlsFD~~~e~f  142 (281)
                        +|..+...  .  ....+++|+..+++|+.            .+..+|. |-+.......   ....+.+||.++++|
T Consensus       391 --~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W  468 (534)
T PHA03098        391 --LIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKW  468 (534)
T ss_pred             --EEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCce
Confidence              22222110  1  12468999999999977            3456777 7655422110   123489999999999


Q ss_pred             EEEe-CCCCcCCCCeeEEEEeCCeEEEEEecCCCCCeEEEEEEcC--CceeeEEEecC
Q 041236          143 RVIL-LPDDVAKGAEFDLFDFGGCLGLIHCHARRRAHVDIWTRNE--LNWIKIMCIPR  197 (281)
Q Consensus       143 ~~i~-lP~~~~~~~~~~L~~~~g~L~~~~~~~~~~~~i~IWvL~~--~~W~~~~~i~~  197 (281)
                      ..++ +|...   ....+..++|+|.+..-.......-.||+.+-  ..|+.....|.
T Consensus       469 ~~~~~~~~~r---~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~  523 (534)
T PHA03098        469 TELSSLNFPR---INASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKFPK  523 (534)
T ss_pred             eeCCCCCccc---ccceEEEECCEEEEEcCCcCCcccceeEEEeCCCCEEEecCCCcc
Confidence            9884 33221   23456677999988322110122335777764  88988765443

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.39  E-value=0.015  Score=56.67  Aligned_cols=203  Identities=13%  Similarity=0.096  Sum_probs=121.4

Q ss_pred             eecCeEeeeeeecc-ccCcceEEEEcCcCccceecCCCccCCCcceeccCcccccceeeeCCCCceEEEEEEeCC----C
Q 041236           20 CCNGLLCIVVQIHE-HAGEADLVLWNPWTGRYKTVPISVVGLTLDMYGFGYINTFGFCFDQSTNDYKIVRLVNDD----G   94 (281)
Q Consensus        20 scnGLlcl~~~~~~-~~~~~~~~V~NP~Tr~~~~LP~~~~~~~~~~~g~g~~~~~~l~~d~~~~~yKVv~~~~~~----~   94 (281)
                      ++.|.|....+..+ ......+...||.+++|..+.+-+.....  +|..        .-.  +  +|..+.-.+    .
T Consensus       282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~--~~~~--------~~~--~--~lYv~GG~~~~~~~  347 (571)
T KOG4441|consen  282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCR--VGVA--------VLN--G--KLYVVGGYDSGSDR  347 (571)
T ss_pred             CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCccccc--ccEE--------EEC--C--EEEEEccccCCCcc
Confidence            67776666654432 22346788999999999999655433211  1111        110  0  222222111    2


Q ss_pred             CcEEEEEEcCCCCccc------------cccccce-EEeeeccCCcCceEEEEEECCCCeEEEEe-CCCCcCCCCeeEEE
Q 041236           95 ITHFQIYSLNTNFWKT------------GILPDRI-HDTKERFRTIFSSVILCFSLVDDKFRVIL-LPDDVAKGAEFDLF  160 (281)
Q Consensus        95 ~~~~eVys~~~~~Wr~------------~v~~nG~-yWl~~~~~~~~~~~IlsFD~~~e~f~~i~-lP~~~~~~~~~~L~  160 (281)
                      ...+++|+..+++|..            .+.++|. |=+...........|-.+|..+++|..+. ++...   ......
T Consensus       348 l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r---~~~gv~  424 (571)
T KOG4441|consen  348 LSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRR---SGHGVA  424 (571)
T ss_pred             cceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcce---eeeEEE
Confidence            4579999999999987            4678888 87776543223467999999999999884 55422   356788


Q ss_pred             EeCCeEEE-EEecCCCC---CeEEEEEEcCCceeeEEEecCCCCcCccceeeeEEEEecCCcEEEEecCCCCCCCCcEEE
Q 041236          161 DFGGCLGL-IHCHARRR---AHVDIWTRNELNWIKIMCIPRLEDVHSSLYLAPVFFYSGAGEVLLHENDTYPSHGKDVFY  236 (281)
Q Consensus       161 ~~~g~L~~-~~~~~~~~---~~i~IWvL~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~g~ill~~~~~~~~~~~~~l~  236 (281)
                      +++|.|++ ..... ..   ..++..--....|+.+-.++....      ... +++ -+|.|+..-...-.+... ++-
T Consensus       425 ~~~g~iYi~GG~~~-~~~~l~sve~YDP~t~~W~~~~~M~~~R~------~~g-~a~-~~~~iYvvGG~~~~~~~~-~VE  494 (571)
T KOG4441|consen  425 VLGGKLYIIGGGDG-SSNCLNSVECYDPETNTWTLIAPMNTRRS------GFG-VAV-LNGKIYVVGGFDGTSALS-SVE  494 (571)
T ss_pred             EECCEEEEEcCcCC-CccccceEEEEcCCCCceeecCCcccccc------cce-EEE-ECCEEEEECCccCCCccc-eEE
Confidence            99999999 32221 12   222222222288998766655432      222 322 455666664211000122 478


Q ss_pred             EEECCCCeEEEEE
Q 041236          237 LYSLEKKIFRKFK  249 (281)
Q Consensus       237 ~Yd~~t~~~~~i~  249 (281)
                      .||+++++|..+.
T Consensus       495 ~ydp~~~~W~~v~  507 (571)
T KOG4441|consen  495 RYDPETNQWTMVA  507 (571)
T ss_pred             EEcCCCCceeEcc
Confidence            9999999999984

>PHA02713 hypothetical protein; Provisional

Probab=97.39  E-value=0.0059  Score=59.41  Aligned_cols=146  Identities=9%  Similarity=0.112  Sum_probs=86.6

Q ss_pred             cCCeEEEeecCeEeeeeeeccccCcceEEEEcCcCccceecCCCccCCCc-c-------eeccCcccccceeeeCCC---
Q 041236           13 VLHQLIGCCNGLLCIVVQIHEHAGEADLVLWNPWTGRYKTVPISVVGLTL-D-------MYGFGYINTFGFCFDQST---   81 (281)
Q Consensus        13 ~~~~i~~scnGLlcl~~~~~~~~~~~~~~V~NP~Tr~~~~LP~~~~~~~~-~-------~~g~g~~~~~~l~~d~~~---   81 (281)
                      +...-+..++|-|....+..+......+.++||.|.+|..+|+-+..... .       .+.+|.       ++...   
T Consensus       342 R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG-------~~~~~~~~  414 (557)
T PHA02713        342 RCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGG-------RTEHIDYT  414 (557)
T ss_pred             hhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeC-------CCcccccc
Confidence            34455677888777655422211235689999999999999775543211 0       122220       11100   


Q ss_pred             --CceEEEEEEeCC-CCcEEEEEEcCCCCccc------------cccccce-EEeeeccCC-cCceEEEEEECCC-CeEE
Q 041236           82 --NDYKIVRLVNDD-GITHFQIYSLNTNFWKT------------GILPDRI-HDTKERFRT-IFSSVILCFSLVD-DKFR  143 (281)
Q Consensus        82 --~~yKVv~~~~~~-~~~~~eVys~~~~~Wr~------------~v~~nG~-yWl~~~~~~-~~~~~IlsFD~~~-e~f~  143 (281)
                        ..+.-+...... ....+++|+..+++|..            .+.++|. |-+...... .....+.+||.++ ++|.
T Consensus       415 ~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~  494 (557)
T PHA02713        415 SVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWE  494 (557)
T ss_pred             cccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCee
Confidence              000000000000 13468999999999976            4678899 877543211 1124678999999 7998


Q ss_pred             EE-eCCCCcCCCCeeEEEEeCCeEEE
Q 041236          144 VI-LLPDDVAKGAEFDLFDFGGCLGL  168 (281)
Q Consensus       144 ~i-~lP~~~~~~~~~~L~~~~g~L~~  168 (281)
                      .+ ++|...   ....++.++|+|.+
T Consensus       495 ~~~~m~~~r---~~~~~~~~~~~iyv  517 (557)
T PHA02713        495 LITTTESRL---SALHTILHDNTIMM  517 (557)
T ss_pred             EccccCccc---ccceeEEECCEEEE
Confidence            87 566543   34678899999999

>PLN02153 epithiospecifier protein

Probab=97.36  E-value=0.05  Score=49.40  Aligned_cols=163  Identities=10%  Similarity=0.046  Sum_probs=89.0

Q ss_pred             EEeecCeEeeeeeeccccCcceEEEEcCcCccceecCCCcc---CCCcceeccCcccccceeeeCCCCceEEEEEEeCC-
Q 041236           18 IGCCNGLLCIVVQIHEHAGEADLVLWNPWTGRYKTVPISVV---GLTLDMYGFGYINTFGFCFDQSTNDYKIVRLVNDD-   93 (281)
Q Consensus        18 ~~scnGLlcl~~~~~~~~~~~~~~V~NP~Tr~~~~LP~~~~---~~~~~~~g~g~~~~~~l~~d~~~~~yKVv~~~~~~-   93 (281)
                      +..++|.|.+.....+......++++||.|.+|..+|+...   ..+...++..       +++   +  |+..+.-.+ 
T Consensus        81 ~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~-------~~~---~--~iyv~GG~~~  148 (341)
T PLN02153         81 MVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMA-------SDE---N--HVYVFGGVSK  148 (341)
T ss_pred             EEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEE-------EEC---C--EEEEECCccC
Confidence            45567766655432222123578999999999999865311   0111011100       000   0  122221100 


Q ss_pred             --------CCcEEEEEEcCCCCccc---------------cccccce-EEeeeccC--------CcCceEEEEEECCCCe
Q 041236           94 --------GITHFQIYSLNTNFWKT---------------GILPDRI-HDTKERFR--------TIFSSVILCFSLVDDK  141 (281)
Q Consensus        94 --------~~~~~eVys~~~~~Wr~---------------~v~~nG~-yWl~~~~~--------~~~~~~IlsFD~~~e~  141 (281)
                              ....+++|+..+++|+.               .+.++|. |-+.....        ......+.+||+++.+
T Consensus       149 ~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~  228 (341)
T PLN02153        149 GGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGK  228 (341)
T ss_pred             CCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCc
Confidence                    01357899999999975               2456777 65432110        0012468999999999


Q ss_pred             EEEEe----CCCCcCCCCeeEEEEeCCeEEE--EEecC-------CCCCeEEEEEEcC--CceeeEEEe
Q 041236          142 FRVIL----LPDDVAKGAEFDLFDFGGCLGL--IHCHA-------RRRAHVDIWTRNE--LNWIKIMCI  195 (281)
Q Consensus       142 f~~i~----lP~~~~~~~~~~L~~~~g~L~~--~~~~~-------~~~~~i~IWvL~~--~~W~~~~~i  195 (281)
                      |..++    +|...   .......++++|.+  .....       .....-+||+++-  ..|+++...
T Consensus       229 W~~~~~~g~~P~~r---~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~  294 (341)
T PLN02153        229 WTEVETTGAKPSAR---SVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGEC  294 (341)
T ss_pred             EEeccccCCCCCCc---ceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCC
Confidence            99885    34322   23456677888888  22110       0011238999976  889987543

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=97.18  E-value=0.1  Score=47.46  Aligned_cols=117  Identities=15%  Similarity=0.126  Sum_probs=63.5

Q ss_pred             eEEEEEECCCCeEEEE-eCCCCcCCCCeeEEEEeCCeEEE-EEecCCCCCeEEEEEEc--C--CceeeEEEecCCCCcCc
Q 041236          130 SVILCFSLVDDKFRVI-LLPDDVAKGAEFDLFDFGGCLGL-IHCHARRRAHVDIWTRN--E--LNWIKIMCIPRLEDVHS  203 (281)
Q Consensus       130 ~~IlsFD~~~e~f~~i-~lP~~~~~~~~~~L~~~~g~L~~-~~~~~~~~~~i~IWvL~--~--~~W~~~~~i~~~~~~~~  203 (281)
                      ..+.+||..+.+|..+ ++|....  ....+..++|+|.+ ...........++|..+  .  ..|+.+-.++.......
T Consensus       168 ~~v~~YDp~t~~W~~~~~~p~~~r--~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~  245 (346)
T TIGR03547       168 KNVLSYDPSTNQWRNLGENPFLGT--AGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQ  245 (346)
T ss_pred             ceEEEEECCCCceeECccCCCCcC--CCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCcc
Confidence            5699999999999988 4553221  23467788999998 32221122345566654  2  58998766544321000


Q ss_pred             cceeeeEEEEecCCcEEEEecCCCCC--------------CCC--cEEEEEECCCCeEEEEE
Q 041236          204 SLYLAPVFFYSGAGEVLLHENDTYPS--------------HGK--DVFYLYSLEKKIFRKFK  249 (281)
Q Consensus       204 ~~~~~~~~~~~~~g~ill~~~~~~~~--------------~~~--~~l~~Yd~~t~~~~~i~  249 (281)
                      ...... ..+.-+|+|++.-......              ...  ..+-.||+++++|+.+.
T Consensus       246 ~~~~~~-~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~  306 (346)
T TIGR03547       246 EGLAGA-FAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVG  306 (346)
T ss_pred             ccccEE-eeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccC
Confidence            000111 1123456776653110000              000  12668999999998873

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PLN02193 nitrile-specifier protein

Probab=97.14  E-value=0.11  Score=49.41  Aligned_cols=166  Identities=7%  Similarity=0.004  Sum_probs=91.7

Q ss_pred             EEeecCeEeeeeeeccccCcceEEEEcCcCccceecCCCcc-CCCcceeccCcccccceeeeCCCCceEEEEEEeCC---
Q 041236           18 IGCCNGLLCIVVQIHEHAGEADLVLWNPWTGRYKTVPISVV-GLTLDMYGFGYINTFGFCFDQSTNDYKIVRLVNDD---   93 (281)
Q Consensus        18 ~~scnGLlcl~~~~~~~~~~~~~~V~NP~Tr~~~~LP~~~~-~~~~~~~g~g~~~~~~l~~d~~~~~yKVv~~~~~~---   93 (281)
                      +..+++.|.+............++++||.|.+|.++++... ..+...+...       +.+     =|+..+.-.+   
T Consensus       224 ~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~-------~~~-----~~iYv~GG~~~~~  291 (470)
T PLN02193        224 MVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMA-------ADE-----ENVYVFGGVSATA  291 (470)
T ss_pred             EEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEE-------EEC-----CEEEEECCCCCCC
Confidence            44567776665432211124678999999999999965421 1111111110       011     1222221111   


Q ss_pred             CCcEEEEEEcCCCCccc---------------cccccce-EEeeeccCCcCceEEEEEECCCCeEEEEeCC-CCcCCCCe
Q 041236           94 GITHFQIYSLNTNFWKT---------------GILPDRI-HDTKERFRTIFSSVILCFSLVDDKFRVILLP-DDVAKGAE  156 (281)
Q Consensus        94 ~~~~~eVys~~~~~Wr~---------------~v~~nG~-yWl~~~~~~~~~~~IlsFD~~~e~f~~i~lP-~~~~~~~~  156 (281)
                      ....+++|+..+++|..               .+.++|. |-+.... +.....+..||+.+.+|..++.. ..+.....
T Consensus       292 ~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~-g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~  370 (470)
T PLN02193        292 RLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFN-GCEVDDVHYYDPVQDKWTQVETFGVRPSERSV  370 (470)
T ss_pred             CcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCC-CCccCceEEEECCCCEEEEeccCCCCCCCcce
Confidence            13457899999999965               2456777 7554321 11235699999999999988421 11111123


Q ss_pred             eEEEEeCCeEEE--EEecCC-----CC--CeEEEEEEcC--CceeeEEEec
Q 041236          157 FDLFDFGGCLGL--IHCHAR-----RR--AHVDIWTRNE--LNWIKIMCIP  196 (281)
Q Consensus       157 ~~L~~~~g~L~~--~~~~~~-----~~--~~i~IWvL~~--~~W~~~~~i~  196 (281)
                      .....++++|.+  ......     ..  ..-++|+++-  ..|+++-.+.
T Consensus       371 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~  421 (470)
T PLN02193        371 FASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFG  421 (470)
T ss_pred             eEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCC
Confidence            456677889888  221100     01  1226899986  7899876554

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=96.84  E-value=0.043  Score=49.45  Aligned_cols=97  Identities=12%  Similarity=0.027  Sum_probs=60.7

Q ss_pred             cEEEEEEcCCCCc----cc------------cccccce-EEeeeccCCcCceEEEEEECCCCeEEEEe-CCCCcCCCCee
Q 041236           96 THFQIYSLNTNFW----KT------------GILPDRI-HDTKERFRTIFSSVILCFSLVDDKFRVIL-LPDDVAKGAEF  157 (281)
Q Consensus        96 ~~~eVys~~~~~W----r~------------~v~~nG~-yWl~~~~~~~~~~~IlsFD~~~e~f~~i~-lP~~~~~~~~~  157 (281)
                      ..++.|++.++.|    +.            .+.++|. |-+...........+.+||+.+++|..++ +|....  ...
T Consensus        88 ~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r--~~~  165 (323)
T TIGR03548        88 SSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPR--VQP  165 (323)
T ss_pred             eeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCC--Ccc
Confidence            4577888888887    33            4566788 76654321112457899999999999884 664321  234


Q ss_pred             EEEEeCCeEEEEEecCCCCCeEEEEEEcC--CceeeEEEe
Q 041236          158 DLFDFGGCLGLIHCHARRRAHVDIWTRNE--LNWIKIMCI  195 (281)
Q Consensus       158 ~L~~~~g~L~~~~~~~~~~~~i~IWvL~~--~~W~~~~~i  195 (281)
                      ....++++|.+..-.. .....++|+.+-  ..|+++-.+
T Consensus       166 ~~~~~~~~iYv~GG~~-~~~~~~~~~yd~~~~~W~~~~~~  204 (323)
T TIGR03548       166 VCVKLQNELYVFGGGS-NIAYTDGYKYSPKKNQWQKVADP  204 (323)
T ss_pred             eEEEECCEEEEEcCCC-CccccceEEEecCCCeeEECCCC
Confidence            5567899998832211 122345677764  789876543

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=96.76  E-value=0.28  Score=45.20  Aligned_cols=66  Identities=15%  Similarity=0.080  Sum_probs=42.4

Q ss_pred             eEEEEEECCCCeEEEE-eCCCCcCCCCeeEEEEeCCeEEE-EEecCCCCCeEEEEEEc--C--CceeeEEEecC
Q 041236          130 SVILCFSLVDDKFRVI-LLPDDVAKGAEFDLFDFGGCLGL-IHCHARRRAHVDIWTRN--E--LNWIKIMCIPR  197 (281)
Q Consensus       130 ~~IlsFD~~~e~f~~i-~lP~~~~~~~~~~L~~~~g~L~~-~~~~~~~~~~i~IWvL~--~--~~W~~~~~i~~  197 (281)
                      ..+.+||..+.+|..+ ++|....  ....+...+++|.+ ......+....++|..+  .  ..|+++..++.
T Consensus       189 ~~v~~YD~~t~~W~~~~~~p~~~~--~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~  260 (376)
T PRK14131        189 KEVLSYDPSTNQWKNAGESPFLGT--AGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPP  260 (376)
T ss_pred             ceEEEEECCCCeeeECCcCCCCCC--CcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCC
Confidence            4699999999999987 4553221  23456778999998 32221123456677543  2  78998776654

>PHA02790 Kelch-like protein; Provisional

Probab=96.73  E-value=0.082  Score=50.53  Aligned_cols=137  Identities=11%  Similarity=-0.015  Sum_probs=82.1

Q ss_pred             eeeecCCCCCcCCeEEEeecCeEeeeeeeccccCcceEEEEcCcCccceecCCCccCCCc-ceeccCcccccceeeeCCC
Q 041236            3 ARNLNFPLGKVLHQLIGCCNGLLCIVVQIHEHAGEADLVLWNPWTGRYKTVPISVVGLTL-DMYGFGYINTFGFCFDQST   81 (281)
Q Consensus         3 ~~~~~~p~~~~~~~i~~scnGLlcl~~~~~~~~~~~~~~V~NP~Tr~~~~LP~~~~~~~~-~~~g~g~~~~~~l~~d~~~   81 (281)
                      |..++-...++...-...++|-|.+..+..   ....+-.++|.+.+|..+|+.+..... ....          ++.  
T Consensus       299 W~~~~~m~~~r~~~~~v~~~~~iYviGG~~---~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~----------~~g--  363 (480)
T PHA02790        299 WIPIPPMNSPRLYASGVPANNKLYVVGGLP---NPTSVERWFHGDAAWVNMPSLLKPRCNPAVAS----------INN--  363 (480)
T ss_pred             EEECCCCCchhhcceEEEECCEEEEECCcC---CCCceEEEECCCCeEEECCCCCCCCcccEEEE----------ECC--
Confidence            445543333333334456888777665421   124577899999999999876543211 0111          111  


Q ss_pred             CceEEEEEEeCC-CCcEEEEEEcCCCCccc------------cccccce-EEeeeccCCcCceEEEEEECCCCeEEEEe-
Q 041236           82 NDYKIVRLVNDD-GITHFQIYSLNTNFWKT------------GILPDRI-HDTKERFRTIFSSVILCFSLVDDKFRVIL-  146 (281)
Q Consensus        82 ~~yKVv~~~~~~-~~~~~eVys~~~~~Wr~------------~v~~nG~-yWl~~~~~~~~~~~IlsFD~~~e~f~~i~-  146 (281)
                         ||..+...+ ....+|+|+..+++|..            .+.++|. |-+..        ..-+||.++++|..++ 
T Consensus       364 ---~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG--------~~e~ydp~~~~W~~~~~  432 (480)
T PHA02790        364 ---VIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGR--------NAEFYCESSNTWTLIDD  432 (480)
T ss_pred             ---EEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECC--------ceEEecCCCCcEeEcCC
Confidence               111111111 12357899999999977            3467777 76532        2567999999999884 


Q ss_pred             CCCCcCCCCeeEEEEeCCeEEE
Q 041236          147 LPDDVAKGAEFDLFDFGGCLGL  168 (281)
Q Consensus       147 lP~~~~~~~~~~L~~~~g~L~~  168 (281)
                      +|...   ....++.++|+|++
T Consensus       433 m~~~r---~~~~~~v~~~~IYv  451 (480)
T PHA02790        433 PIYPR---DNPELIIVDNKLLL  451 (480)
T ss_pred             CCCCc---cccEEEEECCEEEE
Confidence            33322   34578899999998

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=96.22  E-value=0.05  Score=49.95  Aligned_cols=120  Identities=12%  Similarity=0.168  Sum_probs=72.5

Q ss_pred             eEEEEEECCCCeEEEEeCCCC-cCCCCeeEEEEe-CCeEEE--EEec-------CCCCCeEEEEEEcC-------Cceee
Q 041236          130 SVILCFSLVDDKFRVILLPDD-VAKGAEFDLFDF-GGCLGL--IHCH-------ARRRAHVDIWTRNE-------LNWIK  191 (281)
Q Consensus       130 ~~IlsFD~~~e~f~~i~lP~~-~~~~~~~~L~~~-~g~L~~--~~~~-------~~~~~~i~IWvL~~-------~~W~~  191 (281)
                      .-+.+||+++=+|..+..|.. +.....+.+.+. .|.+.+  ..+.       ..+..+-+.|.|+-       -.|++
T Consensus       207 NDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~k  286 (521)
T KOG1230|consen  207 NDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTK  286 (521)
T ss_pred             eeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEee
Confidence            458999999999999966542 222234566666 677766  2211       12567889999975       46888


Q ss_pred             EEEecCCCCcCccceeeeEEEEecCCcEEEEe---c--CC---CCC-CCCcEEEEEECCCCeEEEEEEecCC
Q 041236          192 IMCIPRLEDVHSSLYLAPVFFYSGAGEVLLHE---N--DT---YPS-HGKDVFYLYSLEKKIFRKFKIEGME  254 (281)
Q Consensus       192 ~~~i~~~~~~~~~~~~~~~~~~~~~g~ill~~---~--~~---~~~-~~~~~l~~Yd~~t~~~~~i~~~~~~  254 (281)
                      +-.+.+....+.+   .. ++++.+++-++.-   +  ..   +.+ .... |+.||+..++|.+-++++..
T Consensus       287 vkp~g~kPspRsg---fs-v~va~n~kal~FGGV~D~eeeeEsl~g~F~ND-Ly~fdlt~nrW~~~qlq~~~  353 (521)
T KOG1230|consen  287 VKPSGVKPSPRSG---FS-VAVAKNHKALFFGGVCDLEEEEESLSGEFFND-LYFFDLTRNRWSEGQLQGKK  353 (521)
T ss_pred             ccCCCCCCCCCCc---ee-EEEecCCceEEecceecccccchhhhhhhhhh-hhheecccchhhHhhhccCC
Confidence            7766665542211   11 4445555433221   0  00   000 2355 99999999999998877643

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=96.15  E-value=1.1  Score=41.39  Aligned_cols=143  Identities=17%  Similarity=0.082  Sum_probs=77.0

Q ss_pred             cEEEEEEcCCCCccc-------------cccccce-EEeeeccCC-c--CceEEEEEECCCCeEEEE-eCCCCcC---C-
Q 041236           96 THFQIYSLNTNFWKT-------------GILPDRI-HDTKERFRT-I--FSSVILCFSLVDDKFRVI-LLPDDVA---K-  153 (281)
Q Consensus        96 ~~~eVys~~~~~Wr~-------------~v~~nG~-yWl~~~~~~-~--~~~~IlsFD~~~e~f~~i-~lP~~~~---~-  153 (281)
                      ..+++|+..++.|+.             .+.+++. |.+...... .  .......+|.++.+|..+ ++|....   . 
T Consensus       189 ~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~  268 (376)
T PRK14131        189 KEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQE  268 (376)
T ss_pred             ceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCCcCC
Confidence            468999999999976             3455777 877653211 1  123345667788999877 4554321   1 


Q ss_pred             C-CeeEEEEeCCeEEE-EEecCCC------------------CCeEEEEEEcCCceeeEEEecCCCCcCccceeeeEEEE
Q 041236          154 G-AEFDLFDFGGCLGL-IHCHARR------------------RAHVDIWTRNELNWIKIMCIPRLEDVHSSLYLAPVFFY  213 (281)
Q Consensus       154 ~-~~~~L~~~~g~L~~-~~~~~~~------------------~~~i~IWvL~~~~W~~~~~i~~~~~~~~~~~~~~~~~~  213 (281)
                      . .......++|+|.+ .......                  ....+++-.+...|++.-.++....      ...  ++
T Consensus       269 ~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r~------~~~--av  340 (376)
T PRK14131        269 GVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGLA------YGV--SV  340 (376)
T ss_pred             ccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCcc------ceE--EE
Confidence            0 11224567899888 2211000                  0124455555588987654443221      122  23


Q ss_pred             ecCCcEEEEecCCC-CCCCCcEEEEEECCCCeEEE
Q 041236          214 SGAGEVLLHENDTY-PSHGKDVFYLYSLEKKIFRK  247 (281)
Q Consensus       214 ~~~g~ill~~~~~~-~~~~~~~l~~Yd~~t~~~~~  247 (281)
                      .-+|+|++.-...- ..... .+..|+++++++..
T Consensus       341 ~~~~~iyv~GG~~~~~~~~~-~v~~~~~~~~~~~~  374 (376)
T PRK14131        341 SWNNGVLLIGGETAGGKAVS-DVTLLSWDGKKLTV  374 (376)
T ss_pred             EeCCEEEEEcCCCCCCcEee-eEEEEEEcCCEEEE
Confidence            34566766642100 00112 38888888777654

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=95.56  E-value=0.73  Score=41.43  Aligned_cols=130  Identities=12%  Similarity=0.007  Sum_probs=72.1

Q ss_pred             cccccce-EEeeeccCCcCceEEEEEECCCCeEE--EEeCCCCcCCCCeeEEEEeCCeEEE-EEecCCCCCeEEEEEEcC
Q 041236          111 GILPDRI-HDTKERFRTIFSSVILCFSLVDDKFR--VILLPDDVAKGAEFDLFDFGGCLGL-IHCHARRRAHVDIWTRNE  186 (281)
Q Consensus       111 ~v~~nG~-yWl~~~~~~~~~~~IlsFD~~~e~f~--~i~lP~~~~~~~~~~L~~~~g~L~~-~~~~~~~~~~i~IWvL~~  186 (281)
                      .+.+++. |.+...........+.+||+.+++|.  ...+|+.+..........++|+|.+ ..... ....-++|+++-
T Consensus        68 ~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~-~~~~~~v~~yd~  146 (323)
T TIGR03548        68 SVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRN-GKPSNKSYLFNL  146 (323)
T ss_pred             EEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCC-CccCceEEEEcC
Confidence            4566777 77765332222357889999998872  1233332221123566778999988 32211 122335777764


Q ss_pred             --CceeeEEEecCCCCcCccceeeeEEEEecCCcEEEEecCCCCCCCCcEEEEEECCCCeEEEEEE
Q 041236          187 --LNWIKIMCIPRLEDVHSSLYLAPVFFYSGAGEVLLHENDTYPSHGKDVFYLYSLEKKIFRKFKI  250 (281)
Q Consensus       187 --~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~g~ill~~~~~~~~~~~~~l~~Yd~~t~~~~~i~~  250 (281)
                        ..|+++-.++...      .... .++..+++|++.-...- +.... +..||+++++|+.+..
T Consensus       147 ~~~~W~~~~~~p~~~------r~~~-~~~~~~~~iYv~GG~~~-~~~~~-~~~yd~~~~~W~~~~~  203 (323)
T TIGR03548       147 ETQEWFELPDFPGEP------RVQP-VCVKLQNELYVFGGGSN-IAYTD-GYKYSPKKNQWQKVAD  203 (323)
T ss_pred             CCCCeeECCCCCCCC------CCcc-eEEEECCEEEEEcCCCC-ccccc-eEEEecCCCeeEECCC
Confidence              8899865443211      1122 22334567766641100 01133 7899999999998854

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=95.31  E-value=2.1  Score=38.71  Aligned_cols=102  Identities=13%  Similarity=0.140  Sum_probs=59.1

Q ss_pred             cEEEEEEcCCCCccc-------------cccccce-EEeeeccCC-cCceEEEEE--ECCCCeEEEE-eCCCCcC---CC
Q 041236           96 THFQIYSLNTNFWKT-------------GILPDRI-HDTKERFRT-IFSSVILCF--SLVDDKFRVI-LLPDDVA---KG  154 (281)
Q Consensus        96 ~~~eVys~~~~~Wr~-------------~v~~nG~-yWl~~~~~~-~~~~~IlsF--D~~~e~f~~i-~lP~~~~---~~  154 (281)
                      ..+++|+..+++|+.             .+.++|. |-+...... .....+..|  |.++.+|..+ ++|....   ..
T Consensus       168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~  247 (346)
T TIGR03547       168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEG  247 (346)
T ss_pred             ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCcccc
Confidence            468999999999987             2455777 765442211 111234344  4566699877 4554321   11


Q ss_pred             -CeeEEEEeCCeEEE-EEecCCC------------------CCeEEEEEEcCCceeeEEEecC
Q 041236          155 -AEFDLFDFGGCLGL-IHCHARR------------------RAHVDIWTRNELNWIKIMCIPR  197 (281)
Q Consensus       155 -~~~~L~~~~g~L~~-~~~~~~~------------------~~~i~IWvL~~~~W~~~~~i~~  197 (281)
                       .......++|+|.+ .-.....                  ...+++|-.+...|++...++.
T Consensus       248 ~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~  310 (346)
T TIGR03547       248 LAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQ  310 (346)
T ss_pred             ccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCC
Confidence             12235678999988 2221000                  1257788877788998766544

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=94.14  E-value=0.54  Score=41.03  Aligned_cols=97  Identities=11%  Similarity=0.173  Sum_probs=60.2

Q ss_pred             cEEEEEEcCCCCccc---------------cccccce-EEeeeccCCc---------CceEEEEEECCCCeEEEEe-CCC
Q 041236           96 THFQIYSLNTNFWKT---------------GILPDRI-HDTKERFRTI---------FSSVILCFSLVDDKFRVIL-LPD  149 (281)
Q Consensus        96 ~~~eVys~~~~~Wr~---------------~v~~nG~-yWl~~~~~~~---------~~~~IlsFD~~~e~f~~i~-lP~  149 (281)
                      ...++++..|..||.               ++.++|. |-+....+..         --..|++||+.++.|..-+ -|.
T Consensus       157 ~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~  236 (392)
T KOG4693|consen  157 QDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTM  236 (392)
T ss_pred             ccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCc
Confidence            345666666666666               6777888 8777654321         1257999999999996541 111


Q ss_pred             CcCCCCeeEEEEeCCeEEEE-EecC-CCCCeEEEEEEcC--CceeeE
Q 041236          150 DVAKGAEFDLFDFGGCLGLI-HCHA-RRRAHVDIWTRNE--LNWIKI  192 (281)
Q Consensus       150 ~~~~~~~~~L~~~~g~L~~~-~~~~-~~~~~i~IWvL~~--~~W~~~  192 (281)
                      .+...+.....+++|.+.+. .... -+..-=++|..+-  ..|+++
T Consensus       237 ~P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I  283 (392)
T KOG4693|consen  237 KPGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVI  283 (392)
T ss_pred             CCCcccccceEEEcceEEEecccchhhhhhhcceeecccccchheee
Confidence            11112445677889999982 2211 1234557888876  779874

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=93.68  E-value=0.78  Score=40.32  Aligned_cols=126  Identities=14%  Similarity=0.108  Sum_probs=84.5

Q ss_pred             eeeecCCCCCcCCeEEEeecCeEeeeeeeccccCcceEEEEcCcCccceecCCCccCCCcceeccCcccccceeeeCCCC
Q 041236            3 ARNLNFPLGKVLHQLIGCCNGLLCIVVQIHEHAGEADLVLWNPWTGRYKTVPISVVGLTLDMYGFGYINTFGFCFDQSTN   82 (281)
Q Consensus         3 ~~~~~~p~~~~~~~i~~scnGLlcl~~~~~~~~~~~~~~V~NP~Tr~~~~LP~~~~~~~~~~~g~g~~~~~~l~~d~~~~   82 (281)
                      .+-++-|.+....-|+..-||=|-....     ..+.+..-||.+..-..+|+|...... .-..+        -||.. 
T Consensus       180 i~vfpaPqG~gpyGi~atpdGsvwyasl-----agnaiaridp~~~~aev~p~P~~~~~g-sRriw--------sdpig-  244 (353)
T COG4257         180 ISVFPAPQGGGPYGICATPDGSVWYASL-----AGNAIARIDPFAGHAEVVPQPNALKAG-SRRIW--------SDPIG-  244 (353)
T ss_pred             eeeeccCCCCCCcceEECCCCcEEEEec-----cccceEEcccccCCcceecCCCccccc-ccccc--------cCccC-
Confidence            4456777766666888888998887763     456788999999988888887752211 11122        34321 


Q ss_pred             ceEEEEEEeCCCCcEEEEEEcCCCCccc-----------cccccce--EEeeeccCCcCceEEEEEECCCCeEEEEeCCC
Q 041236           83 DYKIVRLVNDDGITHFQIYSLNTNFWKT-----------GILPDRI--HDTKERFRTIFSSVILCFSLVDDKFRVILLPD  149 (281)
Q Consensus        83 ~yKVv~~~~~~~~~~~eVys~~~~~Wr~-----------~v~~nG~--yWl~~~~~~~~~~~IlsFD~~~e~f~~i~lP~  149 (281)
                         -+++. +.+.-.++-|.-.+.+|++           .++++..  -|+..-    ....|..||.++++|+++++|.
T Consensus       245 ---~~wit-twg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~sea----~agai~rfdpeta~ftv~p~pr  316 (353)
T COG4257         245 ---RAWIT-TWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWLSEA----DAGAIGRFDPETARFTVLPIPR  316 (353)
T ss_pred             ---cEEEe-ccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEEeecc----ccCceeecCcccceEEEecCCC
Confidence               12222 1234456666666667776           5677766  887653    3578999999999999999996


Q ss_pred             Cc
Q 041236          150 DV  151 (281)
Q Consensus       150 ~~  151 (281)
                      ..
T Consensus       317 ~n  318 (353)
T COG4257         317 PN  318 (353)
T ss_pred             CC
Confidence            54

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=93.27  E-value=5.5  Score=35.18  Aligned_cols=217  Identities=18%  Similarity=0.194  Sum_probs=119.7

Q ss_pred             ecCCCCCcCCeEEEeecCeEeeeeeeccccCcceEEEEcCcCccceecCCCccCCCcceeccC-----cccc---cceee
Q 041236            6 LNFPLGKVLHQLIGCCNGLLCIVVQIHEHAGEADLVLWNPWTGRYKTVPISVVGLTLDMYGFG-----YINT---FGFCF   77 (281)
Q Consensus         6 ~~~p~~~~~~~i~~scnGLlcl~~~~~~~~~~~~~~V~NP~Tr~~~~LP~~~~~~~~~~~g~g-----~~~~---~~l~~   77 (281)
                      ++.|.+...+.+.-+-+|-+-+...     ..+.+=-.||+|++..+.|-+.-..+. .+..|     .+.-   ...-+
T Consensus        56 fpvp~G~ap~dvapapdG~VWft~q-----g~gaiGhLdP~tGev~~ypLg~Ga~Ph-giv~gpdg~~Witd~~~aI~R~  129 (353)
T COG4257          56 FPVPNGSAPFDVAPAPDGAVWFTAQ-----GTGAIGHLDPATGEVETYPLGSGASPH-GIVVGPDGSAWITDTGLAIGRL  129 (353)
T ss_pred             eccCCCCCccccccCCCCceEEecC-----ccccceecCCCCCceEEEecCCCCCCc-eEEECCCCCeeEecCcceeEEe
Confidence            4555555444666677887777653     456677789999999999876643321 01111     0000   11124


Q ss_pred             eCCCCceEEEEEEeC--CCCcEEEEEEcCCCCccc----------------------------c--ccccceEEeeeccC
Q 041236           78 DQSTNDYKIVRLVND--DGITHFQIYSLNTNFWKT----------------------------G--ILPDRIHDTKERFR  125 (281)
Q Consensus        78 d~~~~~yKVv~~~~~--~~~~~~eVys~~~~~Wr~----------------------------~--v~~nG~yWl~~~~~  125 (281)
                      |+.+.+++=+-+..+  +..++--||+-..+-|-.                            +  +.-||.-|.+.-  
T Consensus       130 dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyasl--  207 (353)
T COG4257         130 DPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYASL--  207 (353)
T ss_pred             cCcccceEEeecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCCCCCcceEECCCCcEEEEec--
Confidence            665544443333222  246667777766666733                            3  344666444431  


Q ss_pred             CcCceEEEEEECCCCeEEEEeCCCCcCCCCeeEEE-EeCCeEEEEEecCCCCCeEEEEEEcC--CceeeEEEecCCCCcC
Q 041236          126 TIFSSVILCFSLVDDKFRVILLPDDVAKGAEFDLF-DFGGCLGLIHCHARRRAHVDIWTRNE--LNWIKIMCIPRLEDVH  202 (281)
Q Consensus       126 ~~~~~~IlsFD~~~e~f~~i~lP~~~~~~~~~~L~-~~~g~L~~~~~~~~~~~~i~IWvL~~--~~W~~~~~i~~~~~~~  202 (281)
                        ...+|...|.-+..-.+++.|....... ..+. ...|++......   ...+  -..+-  .+|.. +.++-....+
T Consensus       208 --agnaiaridp~~~~aev~p~P~~~~~gs-Rriwsdpig~~wittwg---~g~l--~rfdPs~~sW~e-ypLPgs~arp  278 (353)
T COG4257         208 --AGNAIARIDPFAGHAEVVPQPNALKAGS-RRIWSDPIGRAWITTWG---TGSL--HRFDPSVTSWIE-YPLPGSKARP  278 (353)
T ss_pred             --cccceEEcccccCCcceecCCCcccccc-cccccCccCcEEEeccC---Ccee--eEeCccccccee-eeCCCCCCCc
Confidence              3468999999988888888888754321 1221 122444331110   0000  01111  45654 5555444321


Q ss_pred             ccceeeeEEEEecCCcEEEEecCCCCCCCCcEEEEEECCCCeEEEEEEe
Q 041236          203 SSLYLAPVFFYSGAGEVLLHENDTYPSHGKDVFYLYSLEKKIFRKFKIE  251 (281)
Q Consensus       203 ~~~~~~~~~~~~~~g~ill~~~~~~~~~~~~~l~~Yd~~t~~~~~i~~~  251 (281)
                          . . +.+++.|++.+..-     ..+ .+.-+|++|.+++.+.++
T Consensus       279 ----y-s-~rVD~~grVW~sea-----~ag-ai~rfdpeta~ftv~p~p  315 (353)
T COG4257         279 ----Y-S-MRVDRHGRVWLSEA-----DAG-AIGRFDPETARFTVLPIP  315 (353)
T ss_pred             ----c-e-eeeccCCcEEeecc-----ccC-ceeecCcccceEEEecCC
Confidence                1 1 55678888887651     344 499999999999998664

>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa

Probab=91.88  E-value=1.8  Score=33.51  Aligned_cols=71  Identities=21%  Similarity=0.258  Sum_probs=52.3

Q ss_pred             EEEEEECCCC--eEEEEeCCCCcCC-----------CCeeEEEEeCCeEEEEEec--C-----CCCCeEEEEEEcC----
Q 041236          131 VILCFSLVDD--KFRVILLPDDVAK-----------GAEFDLFDFGGCLGLIHCH--A-----RRRAHVDIWTRNE----  186 (281)
Q Consensus       131 ~IlsFD~~~e--~f~~i~lP~~~~~-----------~~~~~L~~~~g~L~~~~~~--~-----~~~~~i~IWvL~~----  186 (281)
                      .||..|+-++  .++.|+||.....           .....++..+|+|-++...  .     ....++.+|.|..    
T Consensus         7 GIL~CD~~~~~p~l~~vpLP~~~~~~~~~~~~~~~~~~~R~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~~~~~   86 (131)
T PF07762_consen    7 GILFCDVFDDSPVLRFVPLPPPCPPNRRDDRPRGSPESYRDVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLKDPEGS   86 (131)
T ss_pred             CEEEEECCCCCccEEEEeCCCccccCcccccccCCchhCceEEecCCCEEEEEEecccCCCcccCCcEEEEEEeccCCCC
Confidence            5899998876  8889999976421           1346788889999773221  1     2467899999976    


Q ss_pred             -CceeeEEEecCCCCc
Q 041236          187 -LNWIKIMCIPRLEDV  201 (281)
Q Consensus       187 -~~W~~~~~i~~~~~~  201 (281)
                       ..|.+.++++...+.
T Consensus        87 ~~~W~~d~~v~~~diw  102 (131)
T PF07762_consen   87 SWEWKKDCEVDLSDIW  102 (131)
T ss_pred             CCCEEEeEEEEhhhcc
Confidence             679999999887763

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=91.68  E-value=5.3  Score=35.07  Aligned_cols=202  Identities=13%  Similarity=0.143  Sum_probs=105.4

Q ss_pred             cceEEEEcCcCccceecCCCccC----CCcceeccC-cccccceeeeCCCCceEEEEEEe--CC--C-CcEEEEEEcCCC
Q 041236           37 EADLVLWNPWTGRYKTVPISVVG----LTLDMYGFG-YINTFGFCFDQSTNDYKIVRLVN--DD--G-ITHFQIYSLNTN  106 (281)
Q Consensus        37 ~~~~~V~NP~Tr~~~~LP~~~~~----~~~~~~g~g-~~~~~~l~~d~~~~~yKVv~~~~--~~--~-~~~~eVys~~~~  106 (281)
                      .-.+.|.|..+-.|.++|+.-..    .+....-+- |..++ .+|+.     |+. ++-  .+  + +-...-|+.+++
T Consensus        43 piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtv-V~y~d-----~~y-vWGGRND~egaCN~Ly~fDp~t~  115 (392)
T KOG4693|consen   43 PIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTV-VEYQD-----KAY-VWGGRNDDEGACNLLYEFDPETN  115 (392)
T ss_pred             cceeEEeeccceeEEecCcccccccccCCCCccchhhcCceE-EEEcc-----eEE-EEcCccCcccccceeeeeccccc
Confidence            45789999999999999984221    111111111 11111 11221     111 111  11  2 445667888999


Q ss_pred             Cccc---------------cccccce-EEeeeccCC--cCceEEEEEECCCCeEEEEe---CCCCcCCCCeeEEEEeCCe
Q 041236          107 FWKT---------------GILPDRI-HDTKERFRT--IFSSVILCFSLVDDKFRVIL---LPDDVAKGAEFDLFDFGGC  165 (281)
Q Consensus       107 ~Wr~---------------~v~~nG~-yWl~~~~~~--~~~~~IlsFD~~~e~f~~i~---lP~~~~~~~~~~L~~~~g~  165 (281)
                      .|+.               ++.++.. |-+..-...  ....-+-+||+++-+|+.|.   .|+...+  ...-+.++|.
T Consensus       116 ~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRD--FH~a~~~~~~  193 (392)
T KOG4693|consen  116 VWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRD--FHTASVIDGM  193 (392)
T ss_pred             cccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhhh--hhhhhhccce
Confidence            9977               3344444 554432211  12456899999999999983   4443211  1223445566


Q ss_pred             EEEEE--ecC-------CCCCeEEEEEEcC--CceeeEEEecCCCCcCccceeeeEEEEecCCcEEEEec--CCCCCCCC
Q 041236          166 LGLIH--CHA-------RRRAHVDIWTRNE--LNWIKIMCIPRLEDVHSSLYLAPVFFYSGAGEVLLHEN--DTYPSHGK  232 (281)
Q Consensus       166 L~~~~--~~~-------~~~~~i~IWvL~~--~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~g~ill~~~--~~~~~~~~  232 (281)
                      +.+..  .++       ++...=+|-+|+-  +.|.+-..-+...   .++.-+. . .--||++.+.-.  ..+...-.
T Consensus       194 MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P---~GRRSHS-~-fvYng~~Y~FGGYng~ln~Hfn  268 (392)
T KOG4693|consen  194 MYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKP---GGRRSHS-T-FVYNGKMYMFGGYNGTLNVHFN  268 (392)
T ss_pred             EEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCC---Ccccccc-e-EEEcceEEEecccchhhhhhhc
Confidence            66621  111       1223344555554  8898853222221   1222222 1 124666655431  01111335


Q ss_pred             cEEEEEECCCCeEEEEEEecC
Q 041236          233 DVFYLYSLEKKIFRKFKIEGM  253 (281)
Q Consensus       233 ~~l~~Yd~~t~~~~~i~~~~~  253 (281)
                      + |+.+|++|+.|..|...|+
T Consensus       269 d-Ly~FdP~t~~W~~I~~~Gk  288 (392)
T KOG4693|consen  269 D-LYCFDPKTSMWSVISVRGK  288 (392)
T ss_pred             c-eeecccccchheeeeccCC
Confidence            5 9999999999999988876

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=91.43  E-value=6.8  Score=37.55  Aligned_cols=151  Identities=10%  Similarity=0.042  Sum_probs=88.7

Q ss_pred             EEEEEEcCCCCccc---------------cccccce-EEeeeccC-CcCceEEEEEECCCCeEEEEeCCCC-cCCCCeeE
Q 041236           97 HFQIYSLNTNFWKT---------------GILPDRI-HDTKERFR-TIFSSVILCFSLVDDKFRVILLPDD-VAKGAEFD  158 (281)
Q Consensus        97 ~~eVys~~~~~Wr~---------------~v~~nG~-yWl~~~~~-~~~~~~IlsFD~~~e~f~~i~lP~~-~~~~~~~~  158 (281)
                      .+.++.+.+..|..               .+.++.. |-+..... ......|-+||+.+.+|..+..-.. +.......
T Consensus        89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs  168 (482)
T KOG0379|consen   89 DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHS  168 (482)
T ss_pred             eeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccce
Confidence            46777777777755               2344444 44433221 1123579999999999988733222 11123456


Q ss_pred             EEEeCCeEEE-EEecCCCCCeEEEEEEcC--CceeeEEEecCCCCcCccceeeeEEEEecCCcEEEEecC-CCCCCCCcE
Q 041236          159 LFDFGGCLGL-IHCHARRRAHVDIWTRNE--LNWIKIMCIPRLEDVHSSLYLAPVFFYSGAGEVLLHEND-TYPSHGKDV  234 (281)
Q Consensus       159 L~~~~g~L~~-~~~~~~~~~~i~IWvL~~--~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~g~ill~~~~-~~~~~~~~~  234 (281)
                      +...+.+|.+ ..........-++|+++=  ..|.+..........   +..+. +.+.++ ++++.-.. .......+ 
T Consensus       169 ~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~p---R~gH~-~~~~~~-~~~v~gG~~~~~~~l~D-  242 (482)
T KOG0379|consen  169 ATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSP---RYGHA-MVVVGN-KLLVFGGGDDGDVYLND-  242 (482)
T ss_pred             EEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCC---CCCce-EEEECC-eEEEEeccccCCceecc-
Confidence            7777888888 222221236788999976  779998776665542   23443 444444 44444311 00012345 


Q ss_pred             EEEEECCCCeEEEEEEecC
Q 041236          235 FYLYSLEKKIFRKFKIEGM  253 (281)
Q Consensus       235 l~~Yd~~t~~~~~i~~~~~  253 (281)
                      ++.+|+.+.+|+.+...|.
T Consensus       243 ~~~ldl~~~~W~~~~~~g~  261 (482)
T KOG0379|consen  243 VHILDLSTWEWKLLPTGGD  261 (482)
T ss_pred             eEeeecccceeeeccccCC
Confidence            8999999999997755443

>PF13964 Kelch_6: Kelch motif

Probab=88.79  E-value=1.5  Score=27.60  Aligned_cols=40  Identities=13%  Similarity=0.171  Sum_probs=27.5

Q ss_pred             EEeecCeEeeeeeecc-ccCcceEEEEcCcCccceecCCCc
Q 041236           18 IGCCNGLLCIVVQIHE-HAGEADLVLWNPWTGRYKTVPISV   57 (281)
Q Consensus        18 ~~scnGLlcl~~~~~~-~~~~~~~~V~NP~Tr~~~~LP~~~   57 (281)
                      ..+++|-|.+..+..+ ......+.++||.|++|.+||+-+
T Consensus         7 ~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp   47 (50)
T PF13964_consen    7 AVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMP   47 (50)
T ss_pred             EEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCC
Confidence            3456666655543332 223578999999999999998654

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=88.56  E-value=20  Score=33.10  Aligned_cols=87  Identities=6%  Similarity=0.120  Sum_probs=50.8

Q ss_pred             eeEEEEeCCeEEEEEe--cC------------CCCCeEEEEEEcC--CceeeEEEecCCCC-cCccceeeeEEEE---ec
Q 041236          156 EFDLFDFGGCLGLIHC--HA------------RRRAHVDIWTRNE--LNWIKIMCIPRLED-VHSSLYLAPVFFY---SG  215 (281)
Q Consensus       156 ~~~L~~~~g~L~~~~~--~~------------~~~~~i~IWvL~~--~~W~~~~~i~~~~~-~~~~~~~~~~~~~---~~  215 (281)
                      ...|+|..|.|.++..  ..            .....++|+.++.  ..|.++-+++-... .+....+.. .+.   .-
T Consensus       249 ~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLgd~aLFlG~~~s~sv-~a~e~pG~  327 (373)
T PLN03215        249 DRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLGDNAFVMATDTCFSV-LAHEFYGC  327 (373)
T ss_pred             ceeEEEECCEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccCCeEEEEECCccEEE-ecCCCCCc
Confidence            4679999999988322  11            0135789999987  88999888754432 111111111 100   11


Q ss_pred             CCcEEEEecCCCCCCCCcEEEEEECCCCeEEEEEE
Q 041236          216 AGEVLLHENDTYPSHGKDVFYLYSLEKKIFRKFKI  250 (281)
Q Consensus       216 ~g~ill~~~~~~~~~~~~~l~~Yd~~t~~~~~i~~  250 (281)
                      .++-++..      .+.. ...||++.++...+..
T Consensus       328 k~NcIYFt------dd~~-~~v~~~~dg~~~~~~~  355 (373)
T PLN03215        328 LPNSIYFT------EDTM-PKVFKLDNGNGSSIET  355 (373)
T ss_pred             cCCEEEEE------CCCc-ceEEECCCCCccceEe
Confidence            23434444      3344 7799999999777633

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=86.70  E-value=19  Score=34.54  Aligned_cols=152  Identities=15%  Similarity=0.089  Sum_probs=86.6

Q ss_pred             CcEEEEEEcCCCCccc--------------cccccce--EEeeeccCCc-CceEEEEEECCCCeEEEEeCCCCcCC-CCe
Q 041236           95 ITHFQIYSLNTNFWKT--------------GILPDRI--HDTKERFRTI-FSSVILCFSLVDDKFRVILLPDDVAK-GAE  156 (281)
Q Consensus        95 ~~~~eVys~~~~~Wr~--------------~v~~nG~--yWl~~~~~~~-~~~~IlsFD~~~e~f~~i~lP~~~~~-~~~  156 (281)
                      ..++..|+..|+.|+.              .+.+-|.  |-........ ....+-.+|+++.+|.++........ ...
T Consensus       138 ~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~g  217 (482)
T KOG0379|consen  138 LNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYG  217 (482)
T ss_pred             hhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCC
Confidence            3478889999999977              2222233  2221111111 24679999999999998854433221 134


Q ss_pred             eEEEEeCCeEEE-EEecCCCCCeEEEEEEcC--CceeeEEEecCCCCcCccceeeeEEEEecCCcEEEEecCCCCC--CC
Q 041236          157 FDLFDFGGCLGL-IHCHARRRAHVDIWTRNE--LNWIKIMCIPRLEDVHSSLYLAPVFFYSGAGEVLLHENDTYPS--HG  231 (281)
Q Consensus       157 ~~L~~~~g~L~~-~~~~~~~~~~i~IWvL~~--~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~g~ill~~~~~~~~--~~  231 (281)
                      ..+...++++++ ......+..-=++|.|+=  ..|.++-   .....+..+..+. ..+..+ .+++......++  ..
T Consensus       218 H~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~---~~g~~p~~R~~h~-~~~~~~-~~~l~gG~~~~~~~~l  292 (482)
T KOG0379|consen  218 HAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLP---TGGDLPSPRSGHS-LTVSGD-HLLLFGGGTDPKQEPL  292 (482)
T ss_pred             ceEEEECCeEEEEeccccCCceecceEeeecccceeeecc---ccCCCCCCcceee-eEEECC-EEEEEcCCcccccccc
Confidence            567888888888 222112456678899876  5676432   2222222334454 433333 344443221110  13


Q ss_pred             CcEEEEEECCCCeEEEEEEec
Q 041236          232 KDVFYLYSLEKKIFRKFKIEG  252 (281)
Q Consensus       232 ~~~l~~Yd~~t~~~~~i~~~~  252 (281)
                      .+ ++.+|++++.|..+...+
T Consensus       293 ~~-~~~l~~~~~~w~~~~~~~  312 (482)
T KOG0379|consen  293 GD-LYGLDLETLVWSKVESVG  312 (482)
T ss_pred             cc-cccccccccceeeeeccc
Confidence            44 889999999999986655

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=85.42  E-value=17  Score=33.91  Aligned_cols=139  Identities=11%  Similarity=0.120  Sum_probs=78.0

Q ss_pred             EEEEEECCCCeEEEEeCCCCcCCC-CeeEEEEeCCeEEEE--Eec-CC---CCCeEEEEEEcC--CceeeEEEecCCCCc
Q 041236          131 VILCFSLVDDKFRVILLPDDVAKG-AEFDLFDFGGCLGLI--HCH-AR---RRAHVDIWTRNE--LNWIKIMCIPRLEDV  201 (281)
Q Consensus       131 ~IlsFD~~~e~f~~i~lP~~~~~~-~~~~L~~~~g~L~~~--~~~-~~---~~~~i~IWvL~~--~~W~~~~~i~~~~~~  201 (281)
                      -+.++|+.+..|+.+..|..+... .+...+.-.|.|.+.  .+. ++   --.--++|+++=  ..|.++-.=.-...+
T Consensus        99 dLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~R  178 (521)
T KOG1230|consen   99 DLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPR  178 (521)
T ss_pred             eeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCCCC
Confidence            388999999999999777654332 334444444777772  221 11   124568999976  789986432211111


Q ss_pred             CccceeeeEEEEecCCcEEEEe-cC---CCCCCCCcEEEEEECCCCeEEEEEEecCCCCC--ceEEEEe-ecCcccCCCC
Q 041236          202 HSSLYLAPVFFYSGAGEVLLHE-ND---TYPSHGKDVFYLYSLEKKIFRKFKIEGMEQFP--FHIHMAY-TPSLTLLTRC  274 (281)
Q Consensus       202 ~~~~~~~~~~~~~~~g~ill~~-~~---~~~~~~~~~l~~Yd~~t~~~~~i~~~~~~~~~--~~~~~~Y-~eSLv~~~~~  274 (281)
                      .   -.+  +.+++.--||+-- ++   .|+ ..++ |+++|++|=+|.++...|..--+  .++...+ ..+++-.+++
T Consensus       179 S---GHR--MvawK~~lilFGGFhd~nr~y~-YyND-vy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGY  251 (521)
T KOG1230|consen  179 S---GHR--MVAWKRQLILFGGFHDSNRDYI-YYND-VYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGY  251 (521)
T ss_pred             c---cce--eEEeeeeEEEEcceecCCCceE-Eeee-eEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcch
Confidence            1   122  2234443233221 00   011 2355 99999999999999887742111  4455666 6666666555


Q ss_pred             CC
Q 041236          275 RE  276 (281)
Q Consensus       275 ~~  276 (281)
                      -+
T Consensus       252 sK  253 (521)
T KOG1230|consen  252 SK  253 (521)
T ss_pred             hH
Confidence            33

>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []

Probab=84.83  E-value=26  Score=30.54  Aligned_cols=122  Identities=13%  Similarity=0.127  Sum_probs=68.3

Q ss_pred             cccccce-EEeeeccCCcCceEEEEEECCCCeEE-EEeCCCCcCCC---------CeeEEEEeCCeEEE-EEecCCCCCe
Q 041236          111 GILPDRI-HDTKERFRTIFSSVILCFSLVDDKFR-VILLPDDVAKG---------AEFDLFDFGGCLGL-IHCHARRRAH  178 (281)
Q Consensus       111 ~v~~nG~-yWl~~~~~~~~~~~IlsFD~~~e~f~-~i~lP~~~~~~---------~~~~L~~~~g~L~~-~~~~~~~~~~  178 (281)
                      .|..||+ |.-..     ....|+.||+.+++.. ...||......         .+..|++=+.-|.+ +... .....
T Consensus        74 ~vVYngslYY~~~-----~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~-~~~g~  147 (250)
T PF02191_consen   74 HVVYNGSLYYNKY-----NSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATE-DNNGN  147 (250)
T ss_pred             eEEECCcEEEEec-----CCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecC-CCCCc
Confidence            5778999 88665     4578999999999987 88998754221         33556666666666 3322 12335


Q ss_pred             EEEEEEcC------CceeeEEEecCCCCcCccceeeeEEEEecCCcEEEEecCCCCCCCCcEEEEEECCCCeEEEEEEe
Q 041236          179 VDIWTRNE------LNWIKIMCIPRLEDVHSSLYLAPVFFYSGAGEVLLHENDTYPSHGKDVFYLYSLEKKIFRKFKIE  251 (281)
Q Consensus       179 i~IWvL~~------~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~g~ill~~~~~~~~~~~~~l~~Yd~~t~~~~~i~~~  251 (281)
                      |.|=.|+.      +.|.-.+  +-... +.  .|      .-.| +|...++.-. ...+..++||+.+++-+.+.+.
T Consensus       148 ivvskld~~tL~v~~tw~T~~--~k~~~-~n--aF------mvCG-vLY~~~s~~~-~~~~I~yafDt~t~~~~~~~i~  213 (250)
T PF02191_consen  148 IVVSKLDPETLSVEQTWNTSY--PKRSA-GN--AF------MVCG-VLYATDSYDT-RDTEIFYAFDTYTGKEEDVSIP  213 (250)
T ss_pred             EEEEeeCcccCceEEEEEecc--Cchhh-cc--ee------eEee-EEEEEEECCC-CCcEEEEEEECCCCceeceeee
Confidence            77777765      4454321  11111 10  11      1122 3333322110 1122478888888888877665

Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=80.02  E-value=3.7  Score=25.53  Aligned_cols=36  Identities=11%  Similarity=0.141  Sum_probs=19.0

Q ss_pred             cCeEeeeeeeccc-cCcceEEEEcCcCccceecCCCc
Q 041236           22 NGLLCIVVQIHEH-AGEADLVLWNPWTGRYKTVPISV   57 (281)
Q Consensus        22 nGLlcl~~~~~~~-~~~~~~~V~NP~Tr~~~~LP~~~   57 (281)
                      +|-+++....... ...+.++++|+.|++|.+||+.|
T Consensus        12 ~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P   48 (49)
T PF13418_consen   12 DNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP   48 (49)
T ss_dssp             TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred             CCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence            4555554433322 24568899999999999996654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	281
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.2 bits (124), Expect = 1e-07
 Identities = 42/271 (15%), Positives = 79/271 (29%), Gaps = 86/271 (31%)

Query: 55  ISVVGLTLDMYGFG----YINTFGFCFD---QSTNDYKI----VRLVNDDGITHFQIYSL 103
           + + G    + G G     ++    C     Q   D+KI    ++  N        +  L
Sbjct: 153 VLIDG----VLGSGKTWVALDV---CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205

Query: 104 NTNFWKTGI--------LPDRIHDTKERFRTIFSSVILCFSLVDDKFRVILLPDDVAKGA 155
                            +  RIH  +   R +  S      L      ++L   +V    
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL------LVL--LNVQNAK 257

Query: 156 EFDLFDFGGCLGLI---------HCHARRRAHVDI------WTRNE-----LNW--IKIM 193
            ++ F+   C  L+            A    H+ +       T +E     L +   +  
Sbjct: 258 AWNAFNL-SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316

Query: 194 CIPRLEDVHSSLYLAPVFFYSGAGEVLLHEN----DTYPSHGKD---------VFYLYSL 240
            +PR     +   L      S   E  + +     D +     D         +  L   
Sbjct: 317 DLPREVLTTNPRRL------SIIAE-SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369

Query: 241 E-KKIFRKFKIEGMEQFPFHIHMAYTPSLTL 270
           E +K+F +  +     FP   H+   P++ L
Sbjct: 370 EYRKMFDRLSV-----FPPSAHI---PTILL 392

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	281
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	98.84
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	98.81
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	98.73
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	98.71
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	98.62
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	98.58
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	98.41
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	98.15
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	98.13
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	98.02
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	98.0
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.95
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.78
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	97.75
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	97.64
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	96.95
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	95.41
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	92.92

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=98.84  E-value=1.1e-06  Score=76.36  Aligned_cols=222  Identities=8%  Similarity=-0.055  Sum_probs=126.6

Q ss_pred             ceeeecCCCCCcCCeEEEeecCeEeeeeeeccccCcceEEEEcCcCcc---ceecCCCccCCCcceeccCcccccceeee
Q 041236            2 KARNLNFPLGKVLHQLIGCCNGLLCIVVQIHEHAGEADLVLWNPWTGR---YKTVPISVVGLTLDMYGFGYINTFGFCFD   78 (281)
Q Consensus         2 ~~~~~~~p~~~~~~~i~~scnGLlcl~~~~~~~~~~~~~~V~NP~Tr~---~~~LP~~~~~~~~~~~g~g~~~~~~l~~d   78 (281)
                      +|..++-...++...-....+|-|.+.....+......++++||.|++   |..+|+.+.....  ++..       +++
T Consensus        42 ~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~--~~~~-------~~~  112 (301)
T 2vpj_A           42 EWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGL--AGAT-------TLG  112 (301)
T ss_dssp             EEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBS--CEEE-------EET
T ss_pred             eEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccc--eeEE-------EEC
Confidence            355555222233333444567766665533222234689999999999   9999765543211  1111       011


Q ss_pred             CCCCceEEEEEEeCC---CCcEEEEEEcCCCCccc------------cccccce-EEeeeccCCcCceEEEEEECCCCeE
Q 041236           79 QSTNDYKIVRLVNDD---GITHFQIYSLNTNFWKT------------GILPDRI-HDTKERFRTIFSSVILCFSLVDDKF  142 (281)
Q Consensus        79 ~~~~~yKVv~~~~~~---~~~~~eVys~~~~~Wr~------------~v~~nG~-yWl~~~~~~~~~~~IlsFD~~~e~f  142 (281)
                           =|++.+.-.+   ....+++|+..+++|+.            .+.++|. |-+...........+..||+.+.+|
T Consensus       113 -----~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W  187 (301)
T 2vpj_A          113 -----DMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHW  187 (301)
T ss_dssp             -----TEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEE
T ss_pred             -----CEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcE
Confidence                 1333332211   13578999999999986            4566888 7765432211245799999999999


Q ss_pred             EEE-eCCCCcCCCCeeEEEEeCCeEEEEEecCCCCCeEEEEEEcC--CceeeEEEecCCCCcCccceeeeEEEEecCCcE
Q 041236          143 RVI-LLPDDVAKGAEFDLFDFGGCLGLIHCHARRRAHVDIWTRNE--LNWIKIMCIPRLEDVHSSLYLAPVFFYSGAGEV  219 (281)
Q Consensus       143 ~~i-~lP~~~~~~~~~~L~~~~g~L~~~~~~~~~~~~i~IWvL~~--~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~g~i  219 (281)
                      ..+ ++|...   .......++++|.+..-.......-+||+++-  ..|+++-.++...      ..+. .++ .+++|
T Consensus       188 ~~~~~~p~~r---~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r------~~~~-~~~-~~~~i  256 (301)
T 2vpj_A          188 TNVTPMATKR---SGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPR------CYVG-ATV-LRGRL  256 (301)
T ss_dssp             EEECCCSSCC---BSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCC------BSCE-EEE-ETTEE
T ss_pred             EeCCCCCccc---ccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcc------ccee-EEE-ECCEE
Confidence            998 344332   23466778999988322110122345666654  8899875433222      2222 222 35677


Q ss_pred             EEEecCCCCCCCCcEEEEEECCCCeEEEEE
Q 041236          220 LLHENDTYPSHGKDVFYLYSLEKKIFRKFK  249 (281)
Q Consensus       220 ll~~~~~~~~~~~~~l~~Yd~~t~~~~~i~  249 (281)
                      ++.-...-..... .+..||+++++|+.+.
T Consensus       257 ~v~GG~~~~~~~~-~v~~yd~~~~~W~~~~  285 (301)
T 2vpj_A          257 YAIAGYDGNSLLS-SIECYDPIIDSWEVVT  285 (301)
T ss_dssp             EEECCBCSSSBEE-EEEEEETTTTEEEEEE
T ss_pred             EEEcCcCCCcccc-cEEEEcCCCCeEEEcC
Confidence            6664110000013 4899999999999983

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=98.81  E-value=1.3e-06  Score=76.04  Aligned_cols=221  Identities=8%  Similarity=-0.014  Sum_probs=128.4

Q ss_pred             ceeeecCCCCCcCCeEEEeecCeEeeeeeeccccCcceEEEEcCcCccceecCCCccCCCcceeccCcccccceeeeCCC
Q 041236            2 KARNLNFPLGKVLHQLIGCCNGLLCIVVQIHEHAGEADLVLWNPWTGRYKTVPISVVGLTLDMYGFGYINTFGFCFDQST   81 (281)
Q Consensus         2 ~~~~~~~p~~~~~~~i~~scnGLlcl~~~~~~~~~~~~~~V~NP~Tr~~~~LP~~~~~~~~~~~g~g~~~~~~l~~d~~~   81 (281)
                      +|..++-+..++...-....+|.|.+..... ......+.++||.|++|..+|+.+.....  ++..       +++   
T Consensus        35 ~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~-~~~~~~~~~~d~~~~~W~~~~~~p~~r~~--~~~~-------~~~---  101 (306)
T 3ii7_A           35 SWTDIRCPFEKRRDAACVFWDNVVYILGGSQ-LFPIKRMDCYNVVKDSWYSKLGPPTPRDS--LAAC-------AAE---  101 (306)
T ss_dssp             EEEECCCCSCCCBSCEEEEETTEEEEECCBS-SSBCCEEEEEETTTTEEEEEECCSSCCBS--CEEE-------EET---
T ss_pred             CEecCCCCCcccceeEEEEECCEEEEEeCCC-CCCcceEEEEeCCCCeEEECCCCCccccc--eeEE-------EEC---
Confidence            4666654333344444445688777665322 11346899999999999999765532211  1110       011   


Q ss_pred             CceEEEEEEeCC----CCcEEEEEEcCCCCccc------------cccccce-EEeeeccCCcC----ceEEEEEECCCC
Q 041236           82 NDYKIVRLVNDD----GITHFQIYSLNTNFWKT------------GILPDRI-HDTKERFRTIF----SSVILCFSLVDD  140 (281)
Q Consensus        82 ~~yKVv~~~~~~----~~~~~eVys~~~~~Wr~------------~v~~nG~-yWl~~~~~~~~----~~~IlsFD~~~e  140 (281)
                        =||+.+.-.+    ....+++|+..+++|+.            .+.++|. |-+........    ...+..||++++
T Consensus       102 --~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~  179 (306)
T 3ii7_A          102 --GKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATE  179 (306)
T ss_dssp             --TEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTT
T ss_pred             --CEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCC
Confidence              1333332211    24578999999999977            4567888 77664322111    466999999999


Q ss_pred             eEEEEe-CCCCcCCCCeeEEEEeCCeEEEE-EecCCCCCeEEEEEEcC--CceeeEEEecCCCCcCccceeeeEEEEecC
Q 041236          141 KFRVIL-LPDDVAKGAEFDLFDFGGCLGLI-HCHARRRAHVDIWTRNE--LNWIKIMCIPRLEDVHSSLYLAPVFFYSGA  216 (281)
Q Consensus       141 ~f~~i~-lP~~~~~~~~~~L~~~~g~L~~~-~~~~~~~~~i~IWvL~~--~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~  216 (281)
                      +|..++ +|...   .......++|+|.+. .... ....-+||+++-  ..|+++-.++...      .... .++ .+
T Consensus       180 ~W~~~~~~p~~r---~~~~~~~~~~~i~v~GG~~~-~~~~~~~~~yd~~~~~W~~~~~~p~~r------~~~~-~~~-~~  247 (306)
T 3ii7_A          180 TWTELCPMIEAR---KNHGLVFVKDKIFAVGGQNG-LGGLDNVEYYDIKLNEWKMVSPMPWKG------VTVK-CAA-VG  247 (306)
T ss_dssp             EEEEECCCSSCC---BSCEEEEETTEEEEECCEET-TEEBCCEEEEETTTTEEEECCCCSCCB------SCCE-EEE-ET
T ss_pred             eEEECCCccchh---hcceEEEECCEEEEEeCCCC-CCCCceEEEeeCCCCcEEECCCCCCCc------ccee-EEE-EC
Confidence            999984 44332   234667779999882 2211 122335777765  7899864333221      1222 222 25


Q ss_pred             CcEEEEecCCCCCCCCcEEEEEECCCCeEEEEEE
Q 041236          217 GEVLLHENDTYPSHGKDVFYLYSLEKKIFRKFKI  250 (281)
Q Consensus       217 g~ill~~~~~~~~~~~~~l~~Yd~~t~~~~~i~~  250 (281)
                      ++|++.-...-...... +..||+++++|+.+..
T Consensus       248 ~~i~v~GG~~~~~~~~~-~~~yd~~~~~W~~~~~  280 (306)
T 3ii7_A          248 SIVYVLAGFQGVGRLGH-ILEYNTETDKWVANSK  280 (306)
T ss_dssp             TEEEEEECBCSSSBCCE-EEEEETTTTEEEEEEE
T ss_pred             CEEEEEeCcCCCeeeee-EEEEcCCCCeEEeCCC
Confidence            67766641100001234 9999999999999844

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=98.73  E-value=1.5e-06  Score=76.09  Aligned_cols=223  Identities=11%  Similarity=0.054  Sum_probs=125.8

Q ss_pred             ceeeecCCCCCcCCeEEEeecCeEeeeeee----ccccCcceEEEEcCcCccceecCCCccCCCcceeccCcccccceee
Q 041236            2 KARNLNFPLGKVLHQLIGCCNGLLCIVVQI----HEHAGEADLVLWNPWTGRYKTVPISVVGLTLDMYGFGYINTFGFCF   77 (281)
Q Consensus         2 ~~~~~~~p~~~~~~~i~~scnGLlcl~~~~----~~~~~~~~~~V~NP~Tr~~~~LP~~~~~~~~~~~g~g~~~~~~l~~   77 (281)
                      +|..++-...++...-+...+|.|.+....    .+......+.++||.|++|..+|+.+.....  ++..       ++
T Consensus        50 ~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~--~~~~-------~~  120 (308)
T 1zgk_A           50 TWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNR--IGVG-------VI  120 (308)
T ss_dssp             EEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBT--CEEE-------EE
T ss_pred             eEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccc--cEEE-------EE
Confidence            355553222233333334567877766543    1111245799999999999999765543211  1111       01


Q ss_pred             eCCCCceEEEEEEe--CC-CCcEEEEEEcCCCCccc------------cccccce-EEeeeccCCcCceEEEEEECCCCe
Q 041236           78 DQSTNDYKIVRLVN--DD-GITHFQIYSLNTNFWKT------------GILPDRI-HDTKERFRTIFSSVILCFSLVDDK  141 (281)
Q Consensus        78 d~~~~~yKVv~~~~--~~-~~~~~eVys~~~~~Wr~------------~v~~nG~-yWl~~~~~~~~~~~IlsFD~~~e~  141 (281)
                      +   +  ||+.+.-  .. ....+++|+..+++|+.            .+.++|. |-+...........+..||+.+++
T Consensus       121 ~---~--~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~  195 (308)
T 1zgk_A          121 D---G--HIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNE  195 (308)
T ss_dssp             T---T--EEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTE
T ss_pred             C---C--EEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEECCEEEEEeCCCCCCcCceEEEEeCCCCe
Confidence            1   1  2333311  11 13468999999999987            4566777 766543221124579999999999


Q ss_pred             EEEEe-CCCCcCCCCeeEEEEeCCeEEEEEecCCCCCeEEEEEEcC--CceeeEEEecCCCCcCccceeeeEEEEecCCc
Q 041236          142 FRVIL-LPDDVAKGAEFDLFDFGGCLGLIHCHARRRAHVDIWTRNE--LNWIKIMCIPRLEDVHSSLYLAPVFFYSGAGE  218 (281)
Q Consensus       142 f~~i~-lP~~~~~~~~~~L~~~~g~L~~~~~~~~~~~~i~IWvL~~--~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~g~  218 (281)
                      |..++ +|...   .......++++|.+..-.......-++|+++-  ..|+++-.++...      .... ..+ .+++
T Consensus       196 W~~~~~~p~~r---~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r------~~~~-~~~-~~~~  264 (308)
T 1zgk_A          196 WRMITAMNTIR---SGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRR------SALG-ITV-HQGR  264 (308)
T ss_dssp             EEECCCCSSCC---BSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCC------BSCE-EEE-ETTE
T ss_pred             EeeCCCCCCcc---ccceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCc------cceE-EEE-ECCE
Confidence            99883 44322   23456777999988322111123456777764  8899865333221      1222 222 3567


Q ss_pred             EEEEecCCCCCCCCcEEEEEECCCCeEEEEEE
Q 041236          219 VLLHENDTYPSHGKDVFYLYSLEKKIFRKFKI  250 (281)
Q Consensus       219 ill~~~~~~~~~~~~~l~~Yd~~t~~~~~i~~  250 (281)
                      |++.-...-...... +..||+++++|+.+..
T Consensus       265 i~v~GG~~~~~~~~~-v~~yd~~~~~W~~~~~  295 (308)
T 1zgk_A          265 IYVLGGYDGHTFLDS-VECYDPDTDTWSEVTR  295 (308)
T ss_dssp             EEEECCBCSSCBCCE-EEEEETTTTEEEEEEE
T ss_pred             EEEEcCcCCCcccce-EEEEcCCCCEEeecCC
Confidence            766631100001234 9999999999999843

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=98.71  E-value=4.3e-06  Score=72.63  Aligned_cols=206  Identities=10%  Similarity=0.090  Sum_probs=120.3

Q ss_pred             EEeecCeEeeeeeeccccCcceEEEEcCcCccceecCCCccCCCcceeccCcccccceeeeCCCCceEEEEEEeCC---C
Q 041236           18 IGCCNGLLCIVVQIHEHAGEADLVLWNPWTGRYKTVPISVVGLTLDMYGFGYINTFGFCFDQSTNDYKIVRLVNDD---G   94 (281)
Q Consensus        18 ~~scnGLlcl~~~~~~~~~~~~~~V~NP~Tr~~~~LP~~~~~~~~~~~g~g~~~~~~l~~d~~~~~yKVv~~~~~~---~   94 (281)
                      +...+|-|.+.....+......+.++||.|++|..+|+.+.....  ++..       +++   +  +++.+.-.+   .
T Consensus        57 ~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~--~~~~-------~~~---~--~iyv~GG~~~~~~  122 (302)
T 2xn4_A           57 MVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRST--LGAA-------VLN---G--LLYAVGGFDGSTG  122 (302)
T ss_dssp             EEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBS--CEEE-------EET---T--EEEEEEEECSSCE
T ss_pred             EEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccc--eEEE-------EEC---C--EEEEEcCCCCCcc
Confidence            345578777665432222346799999999999999865543211  1111       011   1  333332211   1


Q ss_pred             CcEEEEEEcCCCCccc------------cccccce-EEeeeccCCc--CceEEEEEECCCCeEEEE-eCCCCcCCCCeeE
Q 041236           95 ITHFQIYSLNTNFWKT------------GILPDRI-HDTKERFRTI--FSSVILCFSLVDDKFRVI-LLPDDVAKGAEFD  158 (281)
Q Consensus        95 ~~~~eVys~~~~~Wr~------------~v~~nG~-yWl~~~~~~~--~~~~IlsFD~~~e~f~~i-~lP~~~~~~~~~~  158 (281)
                      ...+++|+..+++|+.            .+.++|. |-+.......  ....+..||+.+++|..+ ++|...   ....
T Consensus       123 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r---~~~~  199 (302)
T 2xn4_A          123 LSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRR---SGAG  199 (302)
T ss_dssp             EEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCC---BSCE
T ss_pred             CceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCcccc---cccc
Confidence            3468999999999987            4567888 7665432111  135699999999999998 444332   2346


Q ss_pred             EEEeCCeEEEEEecCCCCCeEEEEEEcC--CceeeEEEecCCCCcCccceeeeEEEEecCCcEEEEecCCCCCCCCcEEE
Q 041236          159 LFDFGGCLGLIHCHARRRAHVDIWTRNE--LNWIKIMCIPRLEDVHSSLYLAPVFFYSGAGEVLLHENDTYPSHGKDVFY  236 (281)
Q Consensus       159 L~~~~g~L~~~~~~~~~~~~i~IWvL~~--~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~g~ill~~~~~~~~~~~~~l~  236 (281)
                      +..++|+|.+..-.......-++|+++-  ..|+++-.++...      ..+. .+. .+++|++.-.......... +.
T Consensus       200 ~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r------~~~~-~~~-~~~~i~v~GG~~~~~~~~~-v~  270 (302)
T 2xn4_A          200 VGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCR------RNAG-VCA-VNGLLYVVGGDDGSCNLAS-VE  270 (302)
T ss_dssp             EEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCC------BSCE-EEE-ETTEEEEECCBCSSSBCCC-EE
T ss_pred             EEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCcc------ccCe-EEE-ECCEEEEECCcCCCccccc-EE
Confidence            6778999988322111122335777765  7899875433221      1222 222 3667776642100001234 99


Q ss_pred             EEECCCCeEEEEE
Q 041236          237 LYSLEKKIFRKFK  249 (281)
Q Consensus       237 ~Yd~~t~~~~~i~  249 (281)
                      .||+++++|+.+.
T Consensus       271 ~yd~~~~~W~~~~  283 (302)
T 2xn4_A          271 YYNPTTDKWTVVS  283 (302)
T ss_dssp             EEETTTTEEEECS
T ss_pred             EEcCCCCeEEECC
Confidence            9999999999983

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=98.62  E-value=7.1e-06  Score=71.83  Aligned_cols=219  Identities=9%  Similarity=0.054  Sum_probs=124.6

Q ss_pred             eeeecCCCC-CcCCeEEEeecCeEeeeeeec----cc--cCcceEEEEcCcCccceecCCCccCCCcceeccCcccccce
Q 041236            3 ARNLNFPLG-KVLHQLIGCCNGLLCIVVQIH----EH--AGEADLVLWNPWTGRYKTVPISVVGLTLDMYGFGYINTFGF   75 (281)
Q Consensus         3 ~~~~~~p~~-~~~~~i~~scnGLlcl~~~~~----~~--~~~~~~~V~NP~Tr~~~~LP~~~~~~~~~~~g~g~~~~~~l   75 (281)
                      |...+.|.. ++...-....+|.|.+.....    ..  .....++++||.|++|..+|+.+....  .++..       
T Consensus        25 W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~--~~~~~-------   95 (315)
T 4asc_A           25 CYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRC--LFGLG-------   95 (315)
T ss_dssp             EEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEE--SCEEE-------
T ss_pred             EecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchh--ceeEE-------
Confidence            444444331 233344445677666655421    10  012358999999999999976553211  11111       


Q ss_pred             eeeCCCCceEEEEEEe----C-C-CCcEEEEEEcCCCCccc------------cccccce-EEeeec-cCCcCceEEEEE
Q 041236           76 CFDQSTNDYKIVRLVN----D-D-GITHFQIYSLNTNFWKT------------GILPDRI-HDTKER-FRTIFSSVILCF  135 (281)
Q Consensus        76 ~~d~~~~~yKVv~~~~----~-~-~~~~~eVys~~~~~Wr~------------~v~~nG~-yWl~~~-~~~~~~~~IlsF  135 (281)
                      +++   +  +|..+.-    . . ....+++|+..+++|+.            .+.++|. |-+... ........+..|
T Consensus        96 ~~~---~--~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y  170 (315)
T 4asc_A           96 EAL---N--SIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVY  170 (315)
T ss_dssp             EET---T--EEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEE
T ss_pred             EEC---C--EEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEE
Confidence            011   1  3333321    0 1 14568999999999987            4567888 776654 211234679999


Q ss_pred             ECCCCeEEEE-eCCCCcCCCCeeEEEEeCCeEEE-EEecCCCCCeEEEEEEcC--CceeeEEEecCCCCcCccceeeeEE
Q 041236          136 SLVDDKFRVI-LLPDDVAKGAEFDLFDFGGCLGL-IHCHARRRAHVDIWTRNE--LNWIKIMCIPRLEDVHSSLYLAPVF  211 (281)
Q Consensus       136 D~~~e~f~~i-~lP~~~~~~~~~~L~~~~g~L~~-~~~~~~~~~~i~IWvL~~--~~W~~~~~i~~~~~~~~~~~~~~~~  211 (281)
                      |+.+++|..+ ++|...   .......++|+|.+ ..... ....-++|+++-  ..|+++-.++...      ..+. .
T Consensus       171 d~~~~~W~~~~~~p~~r---~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~yd~~~~~W~~~~~~p~~r------~~~~-~  239 (315)
T 4asc_A          171 DPKKFEWKELAPMQTAR---SLFGATVHDGRIIVAAGVTD-TGLTSSAEVYSITDNKWAPFEAFPQER------SSLS-L  239 (315)
T ss_dssp             ETTTTEEEECCCCSSCC---BSCEEEEETTEEEEEEEECS-SSEEEEEEEEETTTTEEEEECCCSSCC------BSCE-E
T ss_pred             eCCCCeEEECCCCCCch---hceEEEEECCEEEEEeccCC-CCccceEEEEECCCCeEEECCCCCCcc------ccee-E
Confidence            9999999988 344332   23456778999988 33321 223447888865  8899875433221      2222 2


Q ss_pred             EEecCCcEEEEecCCC----C-----CCCCcEEEEEECCCCeEEEE
Q 041236          212 FYSGAGEVLLHENDTY----P-----SHGKDVFYLYSLEKKIFRKF  248 (281)
Q Consensus       212 ~~~~~g~ill~~~~~~----~-----~~~~~~l~~Yd~~t~~~~~i  248 (281)
                      +. -+++|++.-...-    .     ..... +..||+++++|+.+
T Consensus       240 ~~-~~~~l~v~GG~~~~~~~~~~~~~~~~~~-v~~yd~~~~~W~~~  283 (315)
T 4asc_A          240 VS-LVGTLYAIGGFATLETESGELVPTELND-IWRYNEEEKKWEGV  283 (315)
T ss_dssp             EE-ETTEEEEEEEEEEEECTTSCEEEEEEEE-EEEEETTTTEEEEE
T ss_pred             EE-ECCEEEEECCccccCcCCccccccccCc-EEEecCCCChhhhh
Confidence            22 3556655531000    0     01133 88999999999999

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=98.58  E-value=1.6e-05  Score=69.68  Aligned_cols=219  Identities=11%  Similarity=0.113  Sum_probs=124.8

Q ss_pred             eeeecCCC-CCcCCeEEEeecCeEeeeeeec-cc-----cCcceEEEEcCcCccceecCCCccCCCcceeccCcccccce
Q 041236            3 ARNLNFPL-GKVLHQLIGCCNGLLCIVVQIH-EH-----AGEADLVLWNPWTGRYKTVPISVVGLTLDMYGFGYINTFGF   75 (281)
Q Consensus         3 ~~~~~~p~-~~~~~~i~~scnGLlcl~~~~~-~~-----~~~~~~~V~NP~Tr~~~~LP~~~~~~~~~~~g~g~~~~~~l   75 (281)
                      |...+.|. .++...-+...+|.|.+..... +.     .....++++||.|++|..+|+.+....  .++..       
T Consensus        36 W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~--~~~~~-------  106 (318)
T 2woz_A           36 CYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARC--LFGLG-------  106 (318)
T ss_dssp             EEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBC--SCEEE-------
T ss_pred             eecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccc--ccceE-------
Confidence            44444443 2333444455677666654311 00     011248999999999999976554321  11111       


Q ss_pred             eeeCCCCceEEEEEEeC---C--CCcEEEEEEcCCCCccc------------cccccce-EEeeeccCC-cCceEEEEEE
Q 041236           76 CFDQSTNDYKIVRLVND---D--GITHFQIYSLNTNFWKT------------GILPDRI-HDTKERFRT-IFSSVILCFS  136 (281)
Q Consensus        76 ~~d~~~~~yKVv~~~~~---~--~~~~~eVys~~~~~Wr~------------~v~~nG~-yWl~~~~~~-~~~~~IlsFD  136 (281)
                      +++   +  ||..+.-.   .  ....+++|+..+++|+.            .+.++|. |-+...... .....+..||
T Consensus       107 ~~~---~--~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd  181 (318)
T 2woz_A          107 EVD---D--KIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYN  181 (318)
T ss_dssp             EET---T--EEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEE
T ss_pred             EEC---C--EEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEc
Confidence            011   1  33333221   1  13468999999999986            4567888 776543211 1235699999


Q ss_pred             CCCCeEEEEe-CCCCcCCCCeeEEEEeCCeEEE-EEecCCCCCeEEEEEEcC--CceeeEEEecCCCCcCccceeeeEEE
Q 041236          137 LVDDKFRVIL-LPDDVAKGAEFDLFDFGGCLGL-IHCHARRRAHVDIWTRNE--LNWIKIMCIPRLEDVHSSLYLAPVFF  212 (281)
Q Consensus       137 ~~~e~f~~i~-lP~~~~~~~~~~L~~~~g~L~~-~~~~~~~~~~i~IWvL~~--~~W~~~~~i~~~~~~~~~~~~~~~~~  212 (281)
                      +.+++|..++ +|...   .......++|+|.+ ..... ....-++|+++-  ..|+++-.++...      ..+. +.
T Consensus       182 ~~~~~W~~~~~~p~~r---~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~yd~~~~~W~~~~~~p~~r------~~~~-~~  250 (318)
T 2woz_A          182 PKKGDWKDLAPMKTPR---SMFGVAIHKGKIVIAGGVTE-DGLSASVEAFDLKTNKWEVMTEFPQER------SSIS-LV  250 (318)
T ss_dssp             TTTTEEEEECCCSSCC---BSCEEEEETTEEEEEEEEET-TEEEEEEEEEETTTCCEEECCCCSSCC------BSCE-EE
T ss_pred             CCCCEEEECCCCCCCc---ccceEEEECCEEEEEcCcCC-CCccceEEEEECCCCeEEECCCCCCcc------cceE-EE
Confidence            9999999984 44332   23456778999998 33221 123457777765  8899865433321      2222 22


Q ss_pred             EecCCcEEEEecCCC---------CCCCCcEEEEEECCCCeEEEE
Q 041236          213 YSGAGEVLLHENDTY---------PSHGKDVFYLYSLEKKIFRKF  248 (281)
Q Consensus       213 ~~~~g~ill~~~~~~---------~~~~~~~l~~Yd~~t~~~~~i  248 (281)
                      + .+++|++.-....         ...... +..||+++++|+++
T Consensus       251 ~-~~~~i~v~GG~~~~~~~~~~~~~~~~~~-v~~yd~~~~~W~~~  293 (318)
T 2woz_A          251 S-LAGSLYAIGGFAMIQLESKEFAPTEVND-IWKYEDDKKEWAGM  293 (318)
T ss_dssp             E-ETTEEEEECCBCCBC----CCBCCBCCC-EEEEETTTTEEEEE
T ss_pred             E-ECCEEEEECCeeccCCCCceeccceeee-EEEEeCCCCEehhh
Confidence            2 3556766531100         001244 99999999999999

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=98.41  E-value=8.1e-05  Score=64.36  Aligned_cols=226  Identities=8%  Similarity=0.017  Sum_probs=125.5

Q ss_pred             ecCeEeeeee-eccccCcceEEEEcCcCccceecCCCccCCCcceeccCcccccceeeeCCCCceEEEEEEeCC---CCc
Q 041236           21 CNGLLCIVVQ-IHEHAGEADLVLWNPWTGRYKTVPISVVGLTLDMYGFGYINTFGFCFDQSTNDYKIVRLVNDD---GIT   96 (281)
Q Consensus        21 cnGLlcl~~~-~~~~~~~~~~~V~NP~Tr~~~~LP~~~~~~~~~~~g~g~~~~~~l~~d~~~~~yKVv~~~~~~---~~~   96 (281)
                      .+|-|.+... .........++++||.|++|..+|+.+.....  ++..       +.+   +  +|+.+.-.+   ...
T Consensus        13 ~~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~--~~~~-------~~~---~--~l~v~GG~~~~~~~~   78 (301)
T 2vpj_A           13 ANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRY--VASV-------SLH---D--RIYVIGGYDGRSRLS   78 (301)
T ss_dssp             CCEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBS--CEEE-------EET---T--EEEEECCBCSSCBCC
T ss_pred             CCCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhcc--ccEE-------EEC---C--EEEEEcCCCCCccCc
Confidence            4555555443 22111346899999999999999854432111  1110       011   1  333332211   134


Q ss_pred             EEEEEEcCCCC---ccc------------cccccce-EEeeeccCCcCceEEEEEECCCCeEEEE-eCCCCcCCCCeeEE
Q 041236           97 HFQIYSLNTNF---WKT------------GILPDRI-HDTKERFRTIFSSVILCFSLVDDKFRVI-LLPDDVAKGAEFDL  159 (281)
Q Consensus        97 ~~eVys~~~~~---Wr~------------~v~~nG~-yWl~~~~~~~~~~~IlsFD~~~e~f~~i-~lP~~~~~~~~~~L  159 (281)
                      .+++|+..+++   |+.            .+.++|. |-+...........+..||+.+.+|..+ ++|...   .....
T Consensus        79 ~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r---~~~~~  155 (301)
T 2vpj_A           79 SVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAR---EGAGL  155 (301)
T ss_dssp             CEEEEETTCCTTCCCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCC---BSCEE
T ss_pred             eEEEEECCCCCCCeeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCc---ccceE
Confidence            68999999999   977            4566888 7765433221245799999999999988 455333   23456


Q ss_pred             EEeCCeEEEEEecCCCCCeEEEEEEcC--CceeeEEEecCCCCcCccceeeeEEEEecCCcEEEEecCCCCCCCCcEEEE
Q 041236          160 FDFGGCLGLIHCHARRRAHVDIWTRNE--LNWIKIMCIPRLEDVHSSLYLAPVFFYSGAGEVLLHENDTYPSHGKDVFYL  237 (281)
Q Consensus       160 ~~~~g~L~~~~~~~~~~~~i~IWvL~~--~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~g~ill~~~~~~~~~~~~~l~~  237 (281)
                      ..++|+|.+..-.......-++|+++-  ..|+++-.++...      ..+. ... .+++|++.-...-...... +..
T Consensus       156 ~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r------~~~~-~~~-~~~~i~v~GG~~~~~~~~~-v~~  226 (301)
T 2vpj_A          156 VVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKR------SGAG-VAL-LNDHIYVVGGFDGTAHLSS-VEA  226 (301)
T ss_dssp             EEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCC------BSCE-EEE-ETTEEEEECCBCSSSBCCC-EEE
T ss_pred             EEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCccc------ccce-EEE-ECCEEEEEeCCCCCcccce-EEE
Confidence            677999988322111123345677764  8899874332221      2222 222 3566766641100001244 999


Q ss_pred             EECCCCeEEEEEEecCCCCCceEEEEeecCcccCCC
Q 041236          238 YSLEKKIFRKFKIEGMEQFPFHIHMAYTPSLTLLTR  273 (281)
Q Consensus       238 Yd~~t~~~~~i~~~~~~~~~~~~~~~Y~eSLv~~~~  273 (281)
                      ||+++++|+.+........ .+.+..+-..|.-+.+
T Consensus       227 yd~~~~~W~~~~~~p~~r~-~~~~~~~~~~i~v~GG  261 (301)
T 2vpj_A          227 YNIRTDSWTTVTSMTTPRC-YVGATVLRGRLYAIAG  261 (301)
T ss_dssp             EETTTTEEEEECCCSSCCB-SCEEEEETTEEEEECC
T ss_pred             EeCCCCcEEECCCCCCccc-ceeEEEECCEEEEEcC
Confidence            9999999999843211110 3344445555555544

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=98.15  E-value=0.00018  Score=62.36  Aligned_cols=180  Identities=8%  Similarity=0.014  Sum_probs=107.8

Q ss_pred             ceeeecCCCCCcCCeEEEeecCeEeeeeeec-cccCcceEEEEcCcCccceecCCCccCCCcceeccCcccccceeeeCC
Q 041236            2 KARNLNFPLGKVLHQLIGCCNGLLCIVVQIH-EHAGEADLVLWNPWTGRYKTVPISVVGLTLDMYGFGYINTFGFCFDQS   80 (281)
Q Consensus         2 ~~~~~~~p~~~~~~~i~~scnGLlcl~~~~~-~~~~~~~~~V~NP~Tr~~~~LP~~~~~~~~~~~g~g~~~~~~l~~d~~   80 (281)
                      +|..++-...++...-....+|-|.+..... +......+.++||.|++|..+|+.+.....  ++..       +++  
T Consensus        81 ~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~--~~~~-------~~~--  149 (306)
T 3ii7_A           81 SWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCS--HGMV-------EAN--  149 (306)
T ss_dssp             EEEEEECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBS--CEEE-------EET--
T ss_pred             eEEECCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcce--eEEE-------EEC--
Confidence            3555543333344444556688777665432 222346899999999999999765543211  1110       011  


Q ss_pred             CCceEEEEEEe--CC-C----CcEEEEEEcCCCCccc------------cccccce-EEeeeccCCcCceEEEEEECCCC
Q 041236           81 TNDYKIVRLVN--DD-G----ITHFQIYSLNTNFWKT------------GILPDRI-HDTKERFRTIFSSVILCFSLVDD  140 (281)
Q Consensus        81 ~~~yKVv~~~~--~~-~----~~~~eVys~~~~~Wr~------------~v~~nG~-yWl~~~~~~~~~~~IlsFD~~~e  140 (281)
                       +  |+..+.-  .. .    ...+++|+..+++|+.            .+.++|. |-+...........+..||++++
T Consensus       150 -~--~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~  226 (306)
T 3ii7_A          150 -G--LIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLN  226 (306)
T ss_dssp             -T--EEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTT
T ss_pred             -C--EEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCC
Confidence             1  3333321  11 1    4568999999999977            4566777 76654222112356999999999


Q ss_pred             eEEEE-eCCCCcCCCCeeEEEEeCCeEEEEEecCCCCCeEEEEEEcC--CceeeEEEecCC
Q 041236          141 KFRVI-LLPDDVAKGAEFDLFDFGGCLGLIHCHARRRAHVDIWTRNE--LNWIKIMCIPRL  198 (281)
Q Consensus       141 ~f~~i-~lP~~~~~~~~~~L~~~~g~L~~~~~~~~~~~~i~IWvL~~--~~W~~~~~i~~~  198 (281)
                      +|..+ ++|...   .......++|+|.+..-.......-+||+++-  ..|+.+-.++..
T Consensus       227 ~W~~~~~~p~~r---~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~  284 (306)
T 3ii7_A          227 EWKMVSPMPWKG---VTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDKWVANSKVRAF  284 (306)
T ss_dssp             EEEECCCCSCCB---SCCEEEEETTEEEEEECBCSSSBCCEEEEEETTTTEEEEEEEEECC
T ss_pred             cEEECCCCCCCc---cceeEEEECCEEEEEeCcCCCeeeeeEEEEcCCCCeEEeCCCcccc
Confidence            99988 455432   23566778999988332111223347888875  889998766543

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=98.13  E-value=0.00023  Score=61.96  Aligned_cols=180  Identities=7%  Similarity=0.016  Sum_probs=106.5

Q ss_pred             ceeeecCCCCCcCCeEEEeecCeEeeeeeeccccCcceEEEEcCcCccceecCCCccCCCcceeccCcccccceeeeCCC
Q 041236            2 KARNLNFPLGKVLHQLIGCCNGLLCIVVQIHEHAGEADLVLWNPWTGRYKTVPISVVGLTLDMYGFGYINTFGFCFDQST   81 (281)
Q Consensus         2 ~~~~~~~p~~~~~~~i~~scnGLlcl~~~~~~~~~~~~~~V~NP~Tr~~~~LP~~~~~~~~~~~g~g~~~~~~l~~d~~~   81 (281)
                      .|..++-...++...-....+|-|.+.....+......+.++||.|.+|..+|+.+.....  ++..       +++   
T Consensus       101 ~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~--~~~~-------~~~---  168 (308)
T 1zgk_A          101 QWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIG--VGVA-------VLN---  168 (308)
T ss_dssp             EEEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBS--CEEE-------EET---
T ss_pred             eEeECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccc--eEEE-------EEC---
Confidence            3555543223334444455688777665332221246799999999999999765432211  1110       011   


Q ss_pred             CceEEEEEEeCC---CCcEEEEEEcCCCCccc------------cccccce-EEeeeccCCcCceEEEEEECCCCeEEEE
Q 041236           82 NDYKIVRLVNDD---GITHFQIYSLNTNFWKT------------GILPDRI-HDTKERFRTIFSSVILCFSLVDDKFRVI  145 (281)
Q Consensus        82 ~~yKVv~~~~~~---~~~~~eVys~~~~~Wr~------------~v~~nG~-yWl~~~~~~~~~~~IlsFD~~~e~f~~i  145 (281)
                        =|++.+.-.+   ....+++|+..+++|+.            .+.++|. |-+...........+..||+++++|..+
T Consensus       169 --~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~  246 (308)
T 1zgk_A          169 --RLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFV  246 (308)
T ss_dssp             --TEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred             --CEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEEC
Confidence              1333332211   13568999999999976            4566777 7765432211246799999999999988


Q ss_pred             e-CCCCcCCCCeeEEEEeCCeEEEEEecCCCCCeEEEEEEcC--CceeeEEEecCC
Q 041236          146 L-LPDDVAKGAEFDLFDFGGCLGLIHCHARRRAHVDIWTRNE--LNWIKIMCIPRL  198 (281)
Q Consensus       146 ~-lP~~~~~~~~~~L~~~~g~L~~~~~~~~~~~~i~IWvL~~--~~W~~~~~i~~~  198 (281)
                      + +|...   ....+..++|+|.+..-.......-+||+++-  ..|+++-.++..
T Consensus       247 ~~~p~~r---~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~  299 (308)
T 1zgk_A          247 APMKHRR---SALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSG  299 (308)
T ss_dssp             CCCSSCC---BSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSC
T ss_pred             CCCCCCc---cceEEEEECCEEEEEcCcCCCcccceEEEEcCCCCEEeecCCCCCC
Confidence            4 44322   23456778999988322111233447788765  889998665544

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=98.02  E-value=0.00027  Score=61.11  Aligned_cols=174  Identities=11%  Similarity=0.089  Sum_probs=102.1

Q ss_pred             ceeeecCCCCCcCCeEEEeecCeEeeeeeeccccCcceEEEEcCcCccceecCCCccCCCcceeccCcccccceeeeCCC
Q 041236            2 KARNLNFPLGKVLHQLIGCCNGLLCIVVQIHEHAGEADLVLWNPWTGRYKTVPISVVGLTLDMYGFGYINTFGFCFDQST   81 (281)
Q Consensus         2 ~~~~~~~p~~~~~~~i~~scnGLlcl~~~~~~~~~~~~~~V~NP~Tr~~~~LP~~~~~~~~~~~g~g~~~~~~l~~d~~~   81 (281)
                      +|..++-...++...-....+|-|.+.....+......+.++||.|.+|..+|+.+.....  ++..       +++.  
T Consensus        88 ~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~--~~~~-------~~~~--  156 (302)
T 2xn4_A           88 QWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSS--VGVG-------VVGG--  156 (302)
T ss_dssp             EEEEECCCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBS--CEEE-------EETT--
T ss_pred             ceeeCCCCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccC--ceEE-------EECC--
Confidence            4566653333334444455788777765433221235789999999999999765543211  1111       0111  


Q ss_pred             CceEEEEEEe--CCC---CcEEEEEEcCCCCccc------------cccccce-EEeeeccCCcCceEEEEEECCCCeEE
Q 041236           82 NDYKIVRLVN--DDG---ITHFQIYSLNTNFWKT------------GILPDRI-HDTKERFRTIFSSVILCFSLVDDKFR  143 (281)
Q Consensus        82 ~~yKVv~~~~--~~~---~~~~eVys~~~~~Wr~------------~v~~nG~-yWl~~~~~~~~~~~IlsFD~~~e~f~  143 (281)
                         |+..+.-  ..+   ...+++|+..+++|+.            .+.++|. |-+...........+..||+++.+|.
T Consensus       157 ---~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~  233 (302)
T 2xn4_A          157 ---LLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWR  233 (302)
T ss_dssp             ---EEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEE
T ss_pred             ---EEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEe
Confidence               3333311  111   3468999999999986            4566888 77654322212356999999999999


Q ss_pred             EEe-CCCCcCCCCeeEEEEeCCeEEEEEecCCCCCeEEEEEEcC--CceeeE
Q 041236          144 VIL-LPDDVAKGAEFDLFDFGGCLGLIHCHARRRAHVDIWTRNE--LNWIKI  192 (281)
Q Consensus       144 ~i~-lP~~~~~~~~~~L~~~~g~L~~~~~~~~~~~~i~IWvL~~--~~W~~~  192 (281)
                      .++ +|...   ....+..++|+|.+..-.......-+||+++-  ..|+.+
T Consensus       234 ~~~~~~~~r---~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~  282 (302)
T 2xn4_A          234 QVADMNMCR---RNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVV  282 (302)
T ss_dssp             EECCCSSCC---BSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred             eCCCCCCcc---ccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCeEEEC
Confidence            984 44332   23456778999988322111122345666654  889875

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=98.00  E-value=0.00043  Score=61.30  Aligned_cols=230  Identities=10%  Similarity=0.066  Sum_probs=121.8

Q ss_pred             CeEEEeecCeEeeeeeeccccCcceEEEEcCcC--ccceecCCCc-cCCCcceeccCcccccceeeeCCCCceEEEEEEe
Q 041236           15 HQLIGCCNGLLCIVVQIHEHAGEADLVLWNPWT--GRYKTVPISV-VGLTLDMYGFGYINTFGFCFDQSTNDYKIVRLVN   91 (281)
Q Consensus        15 ~~i~~scnGLlcl~~~~~~~~~~~~~~V~NP~T--r~~~~LP~~~-~~~~~~~~g~g~~~~~~l~~d~~~~~yKVv~~~~   91 (281)
                      .......+|-|.+....    ....++++||.+  ++|..+|+.+ .....  ++..       +++   +  ||..+.-
T Consensus        12 ~~~~~~~~~~iyv~GG~----~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~--~~~~-------~~~---~--~lyv~GG   73 (357)
T 2uvk_A           12 SGTGAIDNDTVYIGLGS----AGTAWYKLDTQAKDKKWTALAAFPGGPRDQ--ATSA-------FID---G--NLYVFGG   73 (357)
T ss_dssp             SCEEEEETTEEEEECGG----GTTCEEEEETTSSSCCEEECCCCTTCCCBS--CEEE-------EET---T--EEEEECC
T ss_pred             ceEEEEECCEEEEEeCc----CCCeEEEEccccCCCCeeECCCCCCCcCcc--ceEE-------EEC---C--EEEEEcC
Confidence            34445558877776531    345899999984  8999997644 22111  1100       011   1  2222211


Q ss_pred             C----C----CCcEEEEEEcCCCCccc-------------cccccce-EEeeeccCCc----------------------
Q 041236           92 D----D----GITHFQIYSLNTNFWKT-------------GILPDRI-HDTKERFRTI----------------------  127 (281)
Q Consensus        92 ~----~----~~~~~eVys~~~~~Wr~-------------~v~~nG~-yWl~~~~~~~----------------------  127 (281)
                      .    +    ....+++|+..+++|+.             .+.++|. |-+.......                      
T Consensus        74 ~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (357)
T 2uvk_A           74 IGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKIN  153 (357)
T ss_dssp             EEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhh
Confidence            0    1    13468999999999976             2456777 7665422100                      


Q ss_pred             ------------CceEEEEEECCCCeEEEE-eCCCCcCCCCeeEEEEeCCeEEEE--EecCCCCCeEEEEEEc---C-Cc
Q 041236          128 ------------FSSVILCFSLVDDKFRVI-LLPDDVAKGAEFDLFDFGGCLGLI--HCHARRRAHVDIWTRN---E-LN  188 (281)
Q Consensus       128 ------------~~~~IlsFD~~~e~f~~i-~lP~~~~~~~~~~L~~~~g~L~~~--~~~~~~~~~i~IWvL~---~-~~  188 (281)
                                  ....+..||+.+.+|..+ ++|....  ....+..++++|.+.  .... ....-++|.++   + ..
T Consensus       154 ~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~--~~~~~~~~~~~iyv~GG~~~~-~~~~~~v~~~d~d~~~~~  230 (357)
T 2uvk_A          154 AHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGT--AGAAVVNKGDKTWLINGEAKP-GLRTDAVFELDFTGNNLK  230 (357)
T ss_dssp             HHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCC--BSCEEEEETTEEEEECCEEET-TEECCCEEEEECC---CE
T ss_pred             hhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCc--ccccEEEECCEEEEEeeecCC-CcccCceEEEEecCCCCc
Confidence                        125799999999999988 4553321  124677789999882  2211 12244567664   3 78


Q ss_pred             eeeEEEecCCCCcCccceeeeEEEEecCCcEEEEecCCCC-----------------CCCCcEEEEEECCCCeEEEEEEe
Q 041236          189 WIKIMCIPRLEDVHSSLYLAPVFFYSGAGEVLLHENDTYP-----------------SHGKDVFYLYSLEKKIFRKFKIE  251 (281)
Q Consensus       189 W~~~~~i~~~~~~~~~~~~~~~~~~~~~g~ill~~~~~~~-----------------~~~~~~l~~Yd~~t~~~~~i~~~  251 (281)
                      |+++-.++....    ...+. . +..+++|++.-.....                 ..... +..||+++++|+.+...
T Consensus       231 W~~~~~~~~~~~----~~~~~-~-~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~yd~~~~~W~~~~~~  303 (357)
T 2uvk_A          231 WNKLAPVSSPDG----VAGGF-A-GISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYS-TDIHLWHNGKWDKSGEL  303 (357)
T ss_dssp             EEECCCSSTTTC----CBSCE-E-EEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEEC-CEEEECC---CEEEEEC
T ss_pred             EEecCCCCCCcc----cccce-E-EEECCEEEEEcCccccCCcccccccceeccccccceee-EEEEecCCCceeeCCCC
Confidence            998654432211    11222 2 2345567665410000                 00023 78999999999998433


Q ss_pred             cCCCCCceEEEEeecCcccCCC
Q 041236          252 GMEQFPFHIHMAYTPSLTLLTR  273 (281)
Q Consensus       252 ~~~~~~~~~~~~Y~eSLv~~~~  273 (281)
                      ..+.. .+.+..+-..|+-+++
T Consensus       304 p~~r~-~~~~~~~~~~i~v~GG  324 (357)
T 2uvk_A          304 SQGRA-YGVSLPWNNSLLIIGG  324 (357)
T ss_dssp             SSCCB-SSEEEEETTEEEEEEE
T ss_pred             CCCcc-cceeEEeCCEEEEEee
Confidence            22211 2344444444544444

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.95  E-value=0.00066  Score=59.12  Aligned_cols=174  Identities=12%  Similarity=0.078  Sum_probs=104.7

Q ss_pred             ceeeecCCCCCcCCeEEEeecCeEeeeeeec---cccCcceEEEEcCcCccceecCCCccCCCcceeccCcccccceeee
Q 041236            2 KARNLNFPLGKVLHQLIGCCNGLLCIVVQIH---EHAGEADLVLWNPWTGRYKTVPISVVGLTLDMYGFGYINTFGFCFD   78 (281)
Q Consensus         2 ~~~~~~~p~~~~~~~i~~scnGLlcl~~~~~---~~~~~~~~~V~NP~Tr~~~~LP~~~~~~~~~~~g~g~~~~~~l~~d   78 (281)
                      +|..++-...++...-....+|-|.+.....   +......+.++||.|++|..+|+.+.....  ++..       +++
T Consensus        78 ~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~--~~~~-------~~~  148 (315)
T 4asc_A           78 EWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYG--HTVL-------SHM  148 (315)
T ss_dssp             EEEECCCBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBS--CEEE-------EET
T ss_pred             eEEECCCCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccc--eeEE-------EEC
Confidence            3555543223334444556688777665432   112346899999999999999765432211  1100       011


Q ss_pred             CCCCceEEEEEEeC-C---CCcEEEEEEcCCCCccc------------cccccce-EEeeeccCCcCceEEEEEECCCCe
Q 041236           79 QSTNDYKIVRLVND-D---GITHFQIYSLNTNFWKT------------GILPDRI-HDTKERFRTIFSSVILCFSLVDDK  141 (281)
Q Consensus        79 ~~~~~yKVv~~~~~-~---~~~~~eVys~~~~~Wr~------------~v~~nG~-yWl~~~~~~~~~~~IlsFD~~~e~  141 (281)
                      .     |++.+.-. +   ....+++|+..+++|+.            .+.++|. |-+...........+..||+++++
T Consensus       149 ~-----~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~  223 (315)
T 4asc_A          149 D-----LVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNK  223 (315)
T ss_dssp             T-----EEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred             C-----EEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCe
Confidence            1     33333221 1   14578999999999977            4566888 776653322234579999999999


Q ss_pred             EEEEe-CCCCcCCCCeeEEEEeCCeEEE-EEecC----CC----CCeEEEEEEcC--CceeeE
Q 041236          142 FRVIL-LPDDVAKGAEFDLFDFGGCLGL-IHCHA----RR----RAHVDIWTRNE--LNWIKI  192 (281)
Q Consensus       142 f~~i~-lP~~~~~~~~~~L~~~~g~L~~-~~~~~----~~----~~~i~IWvL~~--~~W~~~  192 (281)
                      |..++ +|...   ....+..++|+|.+ .....    .+    ...-+||+++-  ..|+++
T Consensus       224 W~~~~~~p~~r---~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~  283 (315)
T 4asc_A          224 WAPFEAFPQER---SSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV  283 (315)
T ss_dssp             EEEECCCSSCC---BSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred             EEECCCCCCcc---cceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence            99984 44332   23467788999988 22210    00    12457888875  789998

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.78  E-value=0.0013  Score=57.33  Aligned_cols=174  Identities=17%  Similarity=0.233  Sum_probs=102.8

Q ss_pred             ceeeecCCCCCcCCeEEEeecCeEeeeeeec--cccCcceEEEEcCcCccceecCCCccCCCcceeccCcccccceeeeC
Q 041236            2 KARNLNFPLGKVLHQLIGCCNGLLCIVVQIH--EHAGEADLVLWNPWTGRYKTVPISVVGLTLDMYGFGYINTFGFCFDQ   79 (281)
Q Consensus         2 ~~~~~~~p~~~~~~~i~~scnGLlcl~~~~~--~~~~~~~~~V~NP~Tr~~~~LP~~~~~~~~~~~g~g~~~~~~l~~d~   79 (281)
                      +|..++-...++...-...++|-|.+.....  +......+.++||.|.+|..+++.+...    .+.+     ..+++ 
T Consensus        89 ~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r----~~~~-----~~~~~-  158 (318)
T 2woz_A           89 EWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKV----YGHN-----VISHN-  158 (318)
T ss_dssp             EEEECSCBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCE----ESCE-----EEEET-
T ss_pred             cEEECCCCCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcc----cccE-----EEEEC-
Confidence            3555543223344444556688777665432  1112357899999999999997544321    1111     00011 


Q ss_pred             CCCceEEEEEEe--CC--CCcEEEEEEcCCCCccc------------cccccce-EEeeeccCCcCceEEEEEECCCCeE
Q 041236           80 STNDYKIVRLVN--DD--GITHFQIYSLNTNFWKT------------GILPDRI-HDTKERFRTIFSSVILCFSLVDDKF  142 (281)
Q Consensus        80 ~~~~yKVv~~~~--~~--~~~~~eVys~~~~~Wr~------------~v~~nG~-yWl~~~~~~~~~~~IlsFD~~~e~f  142 (281)
                          =||..+.-  ..  ....+++|+..+++|+.            .+.++|. |-+...........+..||+++++|
T Consensus       159 ----~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W  234 (318)
T 2woz_A          159 ----GMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKW  234 (318)
T ss_dssp             ----TEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTCCE
T ss_pred             ----CEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEECCEEEEEcCcCCCCccceEEEEECCCCeE
Confidence                13333321  11  13468999999999987            4567888 7765432211235788999999999


Q ss_pred             EEE-eCCCCcCCCCeeEEEEeCCeEEEEE-ecC----C----CCCeEEEEEEcC--CceeeE
Q 041236          143 RVI-LLPDDVAKGAEFDLFDFGGCLGLIH-CHA----R----RRAHVDIWTRNE--LNWIKI  192 (281)
Q Consensus       143 ~~i-~lP~~~~~~~~~~L~~~~g~L~~~~-~~~----~----~~~~i~IWvL~~--~~W~~~  192 (281)
                      ..+ ++|...   ....+..++|+|.+.. ...    .    ....-+||+++-  ..|+++
T Consensus       235 ~~~~~~p~~r---~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~  293 (318)
T 2woz_A          235 EVMTEFPQER---SSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM  293 (318)
T ss_dssp             EECCCCSSCC---BSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred             EECCCCCCcc---cceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence            988 344432   2346778899998832 110    0    012457888875  889997

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=97.75  E-value=0.0027  Score=61.93  Aligned_cols=209  Identities=9%  Similarity=0.060  Sum_probs=113.7

Q ss_pred             ecCeEeeeeeeccccCcceEEEEcCcCccceecC-CCc-cCCCcceeccCcccccceeeeCCCCceEEEEEEeCC----C
Q 041236           21 CNGLLCIVVQIHEHAGEADLVLWNPWTGRYKTVP-ISV-VGLTLDMYGFGYINTFGFCFDQSTNDYKIVRLVNDD----G   94 (281)
Q Consensus        21 cnGLlcl~~~~~~~~~~~~~~V~NP~Tr~~~~LP-~~~-~~~~~~~~g~g~~~~~~l~~d~~~~~yKVv~~~~~~----~   94 (281)
                      .+|-|.+..+... .....++++||.|++|..++ +.+ ...+....+++      .+.-+.  +=+|+.+.-.+    .
T Consensus       396 ~~~~iyv~GG~~~-~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs------~~~~~~--~~~lyv~GG~~~~~~~  466 (695)
T 2zwa_A          396 AGNDVFYMGGSNP-YRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHT------FTTISR--NNQLLLIGGRKAPHQG  466 (695)
T ss_dssp             CSSCEEEECCBSS-SBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCE------EEEETT--TTEEEEECCBSSTTCB
T ss_pred             ECCEEEEECCCCC-CCcCcEEEEECCCCeEEEeccCCCCCCCCccccceE------EEEEcc--CCEEEEEcCCCCCCCc
Confidence            5676666554322 23467999999999999998 411 10111111111      001100  11244332211    1


Q ss_pred             CcEEEEEEcCCCCccc------------cccc-cce-EEeeeccCCcCceEEEEEECCCCeEEEEe----CCCCcCCCCe
Q 041236           95 ITHFQIYSLNTNFWKT------------GILP-DRI-HDTKERFRTIFSSVILCFSLVDDKFRVIL----LPDDVAKGAE  156 (281)
Q Consensus        95 ~~~~eVys~~~~~Wr~------------~v~~-nG~-yWl~~~~~~~~~~~IlsFD~~~e~f~~i~----lP~~~~~~~~  156 (281)
                      ...+++|+..+++|+.            .+.+ +|. |-+.....  .. .+..||+.+.+|..++    +|....   .
T Consensus       467 ~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~--~~-~v~~yd~~t~~W~~~~~~g~~p~~r~---~  540 (695)
T 2zwa_A          467 LSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTE--GP-AMLLYNVTEEIFKDVTPKDEFFQNSL---V  540 (695)
T ss_dssp             CCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCS--SC-SEEEEETTTTEEEECCCSSGGGGSCC---B
T ss_pred             cccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCC--CC-CEEEEECCCCceEEccCCCCCCCccc---c
Confidence            3468999999999987            3443 777 77654332  12 7999999999999886    343321   2


Q ss_pred             eEEEEeC---CeEEEEE-ec-C--CCCCeEEEEEEcCCc------eeeEEEecCCCCcCccceeeeEEEEecCCcEEEEe
Q 041236          157 FDLFDFG---GCLGLIH-CH-A--RRRAHVDIWTRNELN------WIKIMCIPRLEDVHSSLYLAPVFFYSGAGEVLLHE  223 (281)
Q Consensus       157 ~~L~~~~---g~L~~~~-~~-~--~~~~~i~IWvL~~~~------W~~~~~i~~~~~~~~~~~~~~~~~~~~~g~ill~~  223 (281)
                      .....++   |+|.+.. .. .  .....+.++-++...      |+++-..+...     +..+. ..+.++|+|++.-
T Consensus       541 ~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~-----R~~~~-~~~~~~~~iyv~G  614 (695)
T 2zwa_A          541 SAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQ-----RYGSQ-IKYITPRKLLIVG  614 (695)
T ss_dssp             SCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGC-----CBSCE-EEEEETTEEEEEC
T ss_pred             eeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCC-----cccce-EEEeCCCEEEEEC
Confidence            2223334   7888832 21 1  112444455555555      77776633211     12333 3444546777664


Q ss_pred             cCCCC---CCCCcEEEEEECCCCeEEEEEEe
Q 041236          224 NDTYP---SHGKDVFYLYSLEKKIFRKFKIE  251 (281)
Q Consensus       224 ~~~~~---~~~~~~l~~Yd~~t~~~~~i~~~  251 (281)
                      .....   ..... +..||+++++|+.+.++
T Consensus       615 G~~~~~~~~~~~~-v~~yd~~t~~W~~~~~p  644 (695)
T 2zwa_A          615 GTSPSGLFDRTNS-IISLDPLSETLTSIPIS  644 (695)
T ss_dssp             CBCSSCCCCTTTS-EEEEETTTTEEEECCCC
T ss_pred             CccCCCCCCCCCe-EEEEECCCCeEEEeecc
Confidence            21000   01344 99999999999966443

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=97.64  E-value=0.014  Score=51.38  Aligned_cols=223  Identities=10%  Similarity=-0.031  Sum_probs=117.3

Q ss_pred             ceeeecC-CCCCcCCeEEEeecCeEeeeeee-c----cccCcceEEEEcCcCccceecCCCc-cCCCcceeccCcccccc
Q 041236            2 KARNLNF-PLGKVLHQLIGCCNGLLCIVVQI-H----EHAGEADLVLWNPWTGRYKTVPISV-VGLTLDMYGFGYINTFG   74 (281)
Q Consensus         2 ~~~~~~~-p~~~~~~~i~~scnGLlcl~~~~-~----~~~~~~~~~V~NP~Tr~~~~LP~~~-~~~~~~~~g~g~~~~~~   74 (281)
                      +|..++- |..++...-....+|-|.+.... .    .......+.++||.|++|..+++.+ ....  .++..      
T Consensus        44 ~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~--~~~~~------  115 (357)
T 2uvk_A           44 KWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMA--GHVTF------  115 (357)
T ss_dssp             CEEECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCS--SEEEE------
T ss_pred             CeeECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccc--cceEE------
Confidence            3555542 32344444445568877765543 1    0112467999999999999997644 2111  11100      


Q ss_pred             eeeeCCCCceEEEEEEeCCC-------------------------------------CcEEEEEEcCCCCccc-------
Q 041236           75 FCFDQSTNDYKIVRLVNDDG-------------------------------------ITHFQIYSLNTNFWKT-------  110 (281)
Q Consensus        75 l~~d~~~~~yKVv~~~~~~~-------------------------------------~~~~eVys~~~~~Wr~-------  110 (281)
                       +++   +  ||+.+.-.++                                     ...+++|+..+++|+.       
T Consensus       116 -~~~---~--~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~  189 (357)
T 2uvk_A          116 -VHN---G--KAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWY  189 (357)
T ss_dssp             -EET---T--EEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSC
T ss_pred             -EEC---C--EEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCC
Confidence             011   1  3333332110                                     2479999999999976       


Q ss_pred             ------cccccce-EEeeeccC-CcCceEEEEEEC--CCCeEEEE-eCCCCcCCCCeeEEEEeCCeEEEE--EecC----
Q 041236          111 ------GILPDRI-HDTKERFR-TIFSSVILCFSL--VDDKFRVI-LLPDDVAKGAEFDLFDFGGCLGLI--HCHA----  173 (281)
Q Consensus       111 ------~v~~nG~-yWl~~~~~-~~~~~~IlsFD~--~~e~f~~i-~lP~~~~~~~~~~L~~~~g~L~~~--~~~~----  173 (281)
                            .+.++|. |-+..... ......+..||+  ++.+|..+ .+|..... .......++|+|.+.  ....    
T Consensus       190 ~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~iyv~GG~~~~~~~~  268 (357)
T 2uvk_A          190 GTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGV-AGGFAGISNDSLIFAGGAGFKGSRE  268 (357)
T ss_dssp             CCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCC-BSCEEEEETTEEEEECCEECTTHHH
T ss_pred             CcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCccc-ccceEEEECCEEEEEcCccccCCcc
Confidence                  3455777 76643211 111345777887  88899887 34322211 234577889999882  2110    


Q ss_pred             -----------CCCCeEEEEEEcC--CceeeEEEecCCCCcCccceeeeEEEEecCCcEEEEecCCCCCC-CCcEEEEEE
Q 041236          174 -----------RRRAHVDIWTRNE--LNWIKIMCIPRLEDVHSSLYLAPVFFYSGAGEVLLHENDTYPSH-GKDVFYLYS  239 (281)
Q Consensus       174 -----------~~~~~i~IWvL~~--~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~g~ill~~~~~~~~~-~~~~l~~Yd  239 (281)
                                 ......++|+++-  ..|+++-.++....      .+. . +.-+++|++.-....... .. .+..++
T Consensus       269 ~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~------~~~-~-~~~~~~i~v~GG~~~~~~~~~-~v~~l~  339 (357)
T 2uvk_A          269 NYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRA------YGV-S-LPWNNSLLIIGGETAGGKAVT-DSVLIT  339 (357)
T ss_dssp             HHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCB------SSE-E-EEETTEEEEEEEECGGGCEEE-EEEEEE
T ss_pred             cccccceeccccccceeeEEEEecCCCceeeCCCCCCCcc------cce-e-EEeCCEEEEEeeeCCCCCEee-eEEEEE
Confidence                       0012245666654  88999766554322      222 2 234667766631100000 13 388899


Q ss_pred             CCCCeEEEE
Q 041236          240 LEKKIFRKF  248 (281)
Q Consensus       240 ~~t~~~~~i  248 (281)
                      ++++++.+.
T Consensus       340 ~~~~~~~~~  348 (357)
T 2uvk_A          340 VKDNKVTVQ  348 (357)
T ss_dssp             C-CCSCEEE
T ss_pred             EcCcEeEee
Confidence            999998877

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=96.95  E-value=0.067  Score=51.43  Aligned_cols=62  Identities=10%  Similarity=-0.087  Sum_probs=35.7

Q ss_pred             EEEEEcC--CceeeEE--EecCCCCcCccceeeeEEEEecCCcEEEEecCCCC------CCCCcEEEEEECCCCeEEEEE
Q 041236          180 DIWTRNE--LNWIKIM--CIPRLEDVHSSLYLAPVFFYSGAGEVLLHENDTYP------SHGKDVFYLYSLEKKIFRKFK  249 (281)
Q Consensus       180 ~IWvL~~--~~W~~~~--~i~~~~~~~~~~~~~~~~~~~~~g~ill~~~~~~~------~~~~~~l~~Yd~~t~~~~~i~  249 (281)
                      .|++.+-  ..|.+..  .++..      +..+. ..+..+|+|++.-.....      ..... +..||+++++|+.+.
T Consensus       433 ~v~~yd~~~~~W~~~~~~~mp~~------R~~~~-~~~l~~g~i~v~GG~~~~~~~~~~~~~~~-v~~ydp~t~~W~~~~  504 (656)
T 1k3i_A          433 IITLGEPGTSPNTVFASNGLYFA------RTFHT-SVVLPDGSTFITGGQRRGIPFEDSTPVFT-PEIYVPEQDTFYKQN  504 (656)
T ss_dssp             EEECCSTTSCCEEEECTTCCSSC------CBSCE-EEECTTSCEEEECCBSBCCTTCCCSBCCC-CEEEEGGGTEEEECC
T ss_pred             EEEcCCCCCCCeeEEccCCCCCC------cccCC-eEECCCCCEEEECCcccCcCcCCCCcccc-eEEEcCCCCceeecC
Confidence            4555554  7898764  22221      23343 445568888877521000      00133 899999999999863

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=95.41  E-value=0.25  Score=48.05  Aligned_cols=174  Identities=11%  Similarity=-0.011  Sum_probs=95.6

Q ss_pred             ceeeecCCC------CCcCCeEEEee--cCeEeeeeeecccc-CcceEEEEcCcCccceecCCCccCCCcceeccCcccc
Q 041236            2 KARNLNFPL------GKVLHQLIGCC--NGLLCIVVQIHEHA-GEADLVLWNPWTGRYKTVPISVVGLTLDMYGFGYINT   72 (281)
Q Consensus         2 ~~~~~~~p~------~~~~~~i~~sc--nGLlcl~~~~~~~~-~~~~~~V~NP~Tr~~~~LP~~~~~~~~~~~g~g~~~~   72 (281)
                      +|..++.|+      .++...-....  +|-|.+..+..... ....+.++||.|.+|..+++.+.....  ++..    
T Consensus       423 ~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~--h~~~----  496 (695)
T 2zwa_A          423 KIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFR--HSAC----  496 (695)
T ss_dssp             CEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBS--CEEE----
T ss_pred             eEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCccc--ceEE----
Confidence            466666331      12233334445  88776665433221 235789999999999999765432211  1110    


Q ss_pred             cceeeeCCCCceEEEEEEeCCCCcEEEEEEcCCCCccc--------------c-cccc---ce-EEeeeccCC--cCceE
Q 041236           73 FGFCFDQSTNDYKIVRLVNDDGITHFQIYSLNTNFWKT--------------G-ILPD---RI-HDTKERFRT--IFSSV  131 (281)
Q Consensus        73 ~~l~~d~~~~~yKVv~~~~~~~~~~~eVys~~~~~Wr~--------------~-v~~n---G~-yWl~~~~~~--~~~~~  131 (281)
                          .-.   +=||+.+.-.++...+++|+..+++|..              + +.++   |. |-+......  .....
T Consensus       497 ----~~~---~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~  569 (695)
T 2zwa_A          497 ----SLP---DGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDK  569 (695)
T ss_dssp             ----ECT---TSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCE
T ss_pred             ----EEc---CCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCc
Confidence                000   1123333221111178999999999976              1 3445   66 665543211  12467


Q ss_pred             EEEEECCCCe------EEEEe-CCCCcCCCCeeEEEEeC-CeEEEE-EecCCC--CCeEEEEEEcC--Ccee
Q 041236          132 ILCFSLVDDK------FRVIL-LPDDVAKGAEFDLFDFG-GCLGLI-HCHARR--RAHVDIWTRNE--LNWI  190 (281)
Q Consensus       132 IlsFD~~~e~------f~~i~-lP~~~~~~~~~~L~~~~-g~L~~~-~~~~~~--~~~i~IWvL~~--~~W~  190 (281)
                      +.+||+.+.+      |..+. .|....  .......++ |+|.+. ......  ...-+||+++-  ..|+
T Consensus       570 v~~yd~~~~~w~~~~~W~~~~~~p~~~R--~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~  639 (695)
T 2zwa_A          570 AIIFKYDAENATEPITVIKKLQHPLFQR--YGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLT  639 (695)
T ss_dssp             EEEEEECTTCSSCCEEEEEEEECGGGCC--BSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred             EEEEEccCCccccceEEEEcCCCCCCCc--ccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence            9999999999      87773 342221  234566777 999883 221101  12445667764  8898

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=92.92  E-value=0.68  Score=44.33  Aligned_cols=141  Identities=8%  Similarity=-0.065  Sum_probs=79.9

Q ss_pred             CcEEEEEEcC--------CCCccc----------cccc--cce-EEeeeccCC------cCceEEEEEECCCCeEEEE-e
Q 041236           95 ITHFQIYSLN--------TNFWKT----------GILP--DRI-HDTKERFRT------IFSSVILCFSLVDDKFRVI-L  146 (281)
Q Consensus        95 ~~~~eVys~~--------~~~Wr~----------~v~~--nG~-yWl~~~~~~------~~~~~IlsFD~~~e~f~~i-~  146 (281)
                      ..+++||...        +++|+.          .+++  +|. |-+......      .....+..||+.+.+|..+ .
T Consensus       157 i~E~~v~~~~~~~~~dp~~~~W~~~~~~P~~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~  236 (656)
T 1k3i_A          157 IAEINVFQASSYTAPQPGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTV  236 (656)
T ss_dssp             ESEEEEEECSCCCCCCTTSCEEEEEEECSSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEE
T ss_pred             EEEEEEeeccccccCCCCCCeeeeeccCCCCceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcc
Confidence            4567777654        467874          2233  888 776543211      1234689999999999776 3


Q ss_pred             CCCCcCCCCeeEEEE-eCCeEEEEEecCCCCCeEEEEEEcC--CceeeEEEecCCCCcCccceeeeEEEEecCCcEEEEe
Q 041236          147 LPDDVAKGAEFDLFD-FGGCLGLIHCHARRRAHVDIWTRNE--LNWIKIMCIPRLEDVHSSLYLAPVFFYSGAGEVLLHE  223 (281)
Q Consensus       147 lP~~~~~~~~~~L~~-~~g~L~~~~~~~~~~~~i~IWvL~~--~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~g~ill~~  223 (281)
                      +|..... ....... .+|+|.+..-.  ...  ++|+++-  ..|++.-.++..      +..+. .++..+|+|++.-
T Consensus       237 ~~~~~~~-~~~~~~~~~~g~lyv~GG~--~~~--~v~~yd~~t~~W~~~~~~~~~------R~~~s-~~~~~dg~iyv~G  304 (656)
T 1k3i_A          237 TVTKHDM-FCPGISMDGNGQIVVTGGN--DAK--KTSLYDSSSDSWIPGPDMQVA------RGYQS-SATMSDGRVFTIG  304 (656)
T ss_dssp             EECSCCC-SSCEEEECTTSCEEEECSS--STT--CEEEEEGGGTEEEECCCCSSC------CSSCE-EEECTTSCEEEEC
T ss_pred             cCCCCCC-ccccccCCCCCCEEEeCCC--CCC--ceEEecCcCCceeECCCCCcc------ccccc-eEEecCCeEEEEe
Confidence            3332211 1223343 47898883322  123  4666654  889986432221      22333 4445588887775


Q ss_pred             cCC-CCCCCCcEEEEEECCCCeEEEE
Q 041236          224 NDT-YPSHGKDVFYLYSLEKKIFRKF  248 (281)
Q Consensus       224 ~~~-~~~~~~~~l~~Yd~~t~~~~~i  248 (281)
                      ... -...... +..||+++++|+.+
T Consensus       305 G~~~~~~~~~~-~e~yd~~t~~W~~~  329 (656)
T 1k3i_A          305 GSWSGGVFEKN-GEVYSPSSKTWTSL  329 (656)
T ss_dssp             CCCCSSSCCCC-EEEEETTTTEEEEE
T ss_pred             CcccCCccccc-ceEeCCCCCcceeC
Confidence            210 0001134 88999999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	281
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	97.9
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	96.62
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	95.65
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	92.93

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=0.00081  Score=55.09  Aligned_cols=223  Identities=11%  Similarity=0.080  Sum_probs=117.1

Q ss_pred             ceeeec-CCCCCcCCeEEEeecCeEeeeeeecc----ccCcceEEEEcCcCccceecCCCccCCCcceeccCccccccee
Q 041236            2 KARNLN-FPLGKVLHQLIGCCNGLLCIVVQIHE----HAGEADLVLWNPWTGRYKTVPISVVGLTLDMYGFGYINTFGFC   76 (281)
Q Consensus         2 ~~~~~~-~p~~~~~~~i~~scnGLlcl~~~~~~----~~~~~~~~V~NP~Tr~~~~LP~~~~~~~~~~~g~g~~~~~~l~   76 (281)
                      +|..++ .|....++.+ ..-+|-|++......    ......+.++||.|.++..+|+.+.....  ++..       .
T Consensus        30 ~W~~~~~~p~~R~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~--~~~~-------~   99 (288)
T d1zgka1          30 TWLRLADLQVPRSGLAG-CVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNR--IGVG-------V   99 (288)
T ss_dssp             EEEECCCCSSCCBSCEE-EEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBT--CEEE-------E
T ss_pred             eEEECCCCCCccceeEE-EEECCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecc--eecc-------c
Confidence            366664 3433323443 344665554432211    11245789999999999999865543211  1111       0


Q ss_pred             eeCCCCceEEEEEEe--CC-CCcEEEEEEcCCCCccc------------cccccce-EEeeeccCCcCceEEEEEECCCC
Q 041236           77 FDQSTNDYKIVRLVN--DD-GITHFQIYSLNTNFWKT------------GILPDRI-HDTKERFRTIFSSVILCFSLVDD  140 (281)
Q Consensus        77 ~d~~~~~yKVv~~~~--~~-~~~~~eVys~~~~~Wr~------------~v~~nG~-yWl~~~~~~~~~~~IlsFD~~~e  140 (281)
                      ++     =|+..+..  .. ....+++|+..++.|..            .+..++. +-............+..||..++
T Consensus       100 ~~-----~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~GG~~~~~~~~~~~~~d~~~~  174 (288)
T d1zgka1         100 ID-----GHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERN  174 (288)
T ss_dssp             ET-----TEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTT
T ss_pred             cc-----eeeEEecceecccccceeeeeccccCccccccccccccccceeeeeeecceEecCcccccccceEEEeecccc
Confidence            11     12222211  11 14457889999988877            2344444 33322211122456899999999


Q ss_pred             eEEEEeCCCCcCCCCeeEEEEeCCeEEEEEecCCCCCeEEEEEEcC--CceeeEEEecCCCCcCccceeeeEEEEecCCc
Q 041236          141 KFRVILLPDDVAKGAEFDLFDFGGCLGLIHCHARRRAHVDIWTRNE--LNWIKIMCIPRLEDVHSSLYLAPVFFYSGAGE  218 (281)
Q Consensus       141 ~f~~i~lP~~~~~~~~~~L~~~~g~L~~~~~~~~~~~~i~IWvL~~--~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~g~  218 (281)
                      ++...+.+....  ........++.+.+..-.......-..|..+-  ..|..+-..+..      +..+. .++ -+|+
T Consensus       175 ~~~~~~~~~~~~--~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~------r~~~~-~~~-~~~~  244 (288)
T d1zgka1         175 EWRMITAMNTIR--SGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHR------RSALG-ITV-HQGR  244 (288)
T ss_dssp             EEEECCCCSSCC--BSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSC------CBSCE-EEE-ETTE
T ss_pred             cccccccccccc--ccccccceeeeEEEecCccccccccceeeeeecceeeecccCccCc------ccceE-EEE-ECCE
Confidence            998875544332  23466777888877321111233345555554  667664322211      12222 333 3568


Q ss_pred             EEEEecCCCCCCCCcEEEEEECCCCeEEEEEE
Q 041236          219 VLLHENDTYPSHGKDVFYLYSLEKKIFRKFKI  250 (281)
Q Consensus       219 ill~~~~~~~~~~~~~l~~Yd~~t~~~~~i~~  250 (281)
                      |++.-......... .+..||+++++|+.+..
T Consensus       245 l~v~GG~~~~~~~~-~v~~yd~~~~~W~~~~~  275 (288)
T d1zgka1         245 IYVLGGYDGHTFLD-SVECYDPDTDTWSEVTR  275 (288)
T ss_dssp             EEEECCBCSSCBCC-EEEEEETTTTEEEEEEE
T ss_pred             EEEEecCCCCeecc-eEEEEECCCCEEEECCC
Confidence            87763110000223 38999999999999954

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.62  E-value=0.071  Score=42.76  Aligned_cols=180  Identities=7%  Similarity=-0.000  Sum_probs=99.6

Q ss_pred             eeeecCCCCCcCCeEEEeecCeEeeeeeeccccCcceEEEEcCcCccceecCCCccCCCcceeccCcccccceeeeCCCC
Q 041236            3 ARNLNFPLGKVLHQLIGCCNGLLCIVVQIHEHAGEADLVLWNPWTGRYKTVPISVVGLTLDMYGFGYINTFGFCFDQSTN   82 (281)
Q Consensus         3 ~~~~~~p~~~~~~~i~~scnGLlcl~~~~~~~~~~~~~~V~NP~Tr~~~~LP~~~~~~~~~~~g~g~~~~~~l~~d~~~~   82 (281)
                      |..++-....+...-....+|-+.+..............+++|.|.++...|..+.....  ++..        ...  +
T Consensus        82 w~~~~~~p~~r~~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~--~~~~--------~~~--~  149 (288)
T d1zgka1          82 WSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIG--VGVA--------VLN--R  149 (288)
T ss_dssp             EEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBS--CEEE--------EET--T
T ss_pred             ccccccccceecceeccccceeeEEecceecccccceeeeeccccCcccccccccccccc--ceee--------eee--e
Confidence            444443333344444455577666554332222345678899999999988776543211  1111        111  1


Q ss_pred             ceEEEEEEeC---CCCcEEEEEEcCCCCccc------------cccccce-EEeeeccCCcCceEEEEEECCCCeEEEEe
Q 041236           83 DYKIVRLVND---DGITHFQIYSLNTNFWKT------------GILPDRI-HDTKERFRTIFSSVILCFSLVDDKFRVIL  146 (281)
Q Consensus        83 ~yKVv~~~~~---~~~~~~eVys~~~~~Wr~------------~v~~nG~-yWl~~~~~~~~~~~IlsFD~~~e~f~~i~  146 (281)
                        ++..+...   .....+++|+..++.|..            .+..+|. +-+..............+|..+.++..+.
T Consensus       150 --~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~  227 (288)
T d1zgka1         150 --LLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVA  227 (288)
T ss_dssp             --EEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECC
T ss_pred             --cceEecCcccccccceEEEeeccccccccccccccccccccccceeeeEEEecCccccccccceeeeeecceeeeccc
Confidence              11111111   124467889999988866            2344455 43332221122356789999999999874


Q ss_pred             -CCCCcCCCCeeEEEEeCCeEEEEEecCCCCCeEEEEEEcC--CceeeEEEecCCC
Q 041236          147 -LPDDVAKGAEFDLFDFGGCLGLIHCHARRRAHVDIWTRNE--LNWIKIMCIPRLE  199 (281)
Q Consensus       147 -lP~~~~~~~~~~L~~~~g~L~~~~~~~~~~~~i~IWvL~~--~~W~~~~~i~~~~  199 (281)
                       .|...   .......++|+|.+.--.......-+||+++=  ..|+++-.++...
T Consensus       228 ~~p~~r---~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~R  280 (288)
T d1zgka1         228 PMKHRR---SALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSGR  280 (288)
T ss_dssp             CCSSCC---BSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCC
T ss_pred             CccCcc---cceEEEEECCEEEEEecCCCCeecceEEEEECCCCEEEECCCCCCCc
Confidence             33322   23467778999988321111223335777764  7899998776553

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=95.65  E-value=0.26  Score=41.00  Aligned_cols=211  Identities=10%  Similarity=0.004  Sum_probs=104.2

Q ss_pred             EEeecCeEeeeeeeccccCcceEEEEcCcCccceecCCCccCCCcceeccCcccccceeeeCCCCceEEEEEEeCC----
Q 041236           18 IGCCNGLLCIVVQIHEHAGEADLVLWNPWTGRYKTVPISVVGLTLDMYGFGYINTFGFCFDQSTNDYKIVRLVNDD----   93 (281)
Q Consensus        18 ~~scnGLlcl~~~~~~~~~~~~~~V~NP~Tr~~~~LP~~~~~~~~~~~g~g~~~~~~l~~d~~~~~yKVv~~~~~~----   93 (281)
                      .-..+|.+.+...    .......++||.|+++..+|..+.........          ..++ +  ||+.+.-..    
T Consensus        82 ~~~~~g~i~v~Gg----~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~----------~~~d-G--~v~v~GG~~~~~~  144 (387)
T d1k3ia3          82 SMDGNGQIVVTGG----NDAKKTSLYDSSSDSWIPGPDMQVARGYQSSA----------TMSD-G--RVFTIGGSWSGGV  144 (387)
T ss_dssp             EECTTSCEEEECS----SSTTCEEEEEGGGTEEEECCCCSSCCSSCEEE----------ECTT-S--CEEEECCCCCSSS
T ss_pred             EEecCCcEEEeec----CCCcceeEecCccCccccccccccccccccee----------eecC-C--ceeeecccccccc
Confidence            3345787766542    13467899999999999998766533211110          1111 1  233332211    


Q ss_pred             CCcEEEEEEcCCCCccc---------------c-ccccce-EEeeeccC-----CcCceEEEEEECCCCeEEEEe-CCCC
Q 041236           94 GITHFQIYSLNTNFWKT---------------G-ILPDRI-HDTKERFR-----TIFSSVILCFSLVDDKFRVIL-LPDD  150 (281)
Q Consensus        94 ~~~~~eVys~~~~~Wr~---------------~-v~~nG~-yWl~~~~~-----~~~~~~IlsFD~~~e~f~~i~-lP~~  150 (281)
                      ....+++|+..+++|..               . +..++. +.+.....     +.....+..+|..+..+.... .|..
T Consensus       145 ~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  224 (387)
T d1k3ia3         145 FEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSN  224 (387)
T ss_dssp             CCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEET
T ss_pred             ccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccC
Confidence            24568999999999976               1 122222 33222110     112356778899999887662 2221


Q ss_pred             c--CC----CCeeEEEEeCCeEEEEE--ecC---CCCCeEEEEEEcC--CceeeEEEecCCCCcCccceeeeEEEEecCC
Q 041236          151 V--AK----GAEFDLFDFGGCLGLIH--CHA---RRRAHVDIWTRNE--LNWIKIMCIPRLEDVHSSLYLAPVFFYSGAG  217 (281)
Q Consensus       151 ~--~~----~~~~~L~~~~g~L~~~~--~~~---~~~~~i~IWvL~~--~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~g  217 (281)
                      .  ..    .....+...+|++.+..  ...   .......+..+..  ..|.....+.....   .+..+. ..+..||
T Consensus       225 ~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~---~r~~~~-~~~~~dg  300 (387)
T d1k3ia3         225 RGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYF---ARTFHT-SVVLPDG  300 (387)
T ss_dssp             TEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSS---CCBSCE-EEECTTS
T ss_pred             cccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeecccccc---ccccce-eeeccCC
Confidence            1  11    01122333467776622  111   0123334444433  22222222222111   223444 4456788


Q ss_pred             cEEEEecCCC---CCCCC--cEEEEEECCCCeEEEEE
Q 041236          218 EVLLHENDTY---PSHGK--DVFYLYSLEKKIFRKFK  249 (281)
Q Consensus       218 ~ill~~~~~~---~~~~~--~~l~~Yd~~t~~~~~i~  249 (281)
                      +|++.-....   .....  ..+..||+++++|+.+.
T Consensus       301 ~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~  337 (387)
T d1k3ia3         301 STFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQN  337 (387)
T ss_dssp             CEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECC
T ss_pred             eEEEECCcccCccCCCCcEeceEEEEECCCCeEEECC
Confidence            8877631100   00000  02678999999999984

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=92.93  E-value=0.34  Score=40.19  Aligned_cols=127  Identities=14%  Similarity=0.216  Sum_probs=72.2

Q ss_pred             cCCCCCcCCeEEEeecCeEeeeeeeccc------cCcceEEEEcCcCccceecCCCccCCCcceeccCcccccceeeeCC
Q 041236            7 NFPLGKVLHQLIGCCNGLLCIVVQIHEH------AGEADLVLWNPWTGRYKTVPISVVGLTLDMYGFGYINTFGFCFDQS   80 (281)
Q Consensus         7 ~~p~~~~~~~i~~scnGLlcl~~~~~~~------~~~~~~~V~NP~Tr~~~~LP~~~~~~~~~~~g~g~~~~~~l~~d~~   80 (281)
                      +.|... .+..+-..||=|.+.....+.      .......+|||.|++|..+|+.........++        .+..+.
T Consensus        16 ~~p~~~-~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~--------~~~~~~   86 (387)
T d1k3ia3          16 DLPIVP-AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPG--------ISMDGN   86 (387)
T ss_dssp             ECSSCC-SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCE--------EEECTT
T ss_pred             CCCccc-cEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeE--------EEEecC
Confidence            444443 234555678877765432211      01235789999999999886654322110111        112221


Q ss_pred             CCceEEEEEEeCCCCcEEEEEEcCCCCccc-------------cccccce-EEeeeccC-CcCceEEEEEECCCCeEEEE
Q 041236           81 TNDYKIVRLVNDDGITHFQIYSLNTNFWKT-------------GILPDRI-HDTKERFR-TIFSSVILCFSLVDDKFRVI  145 (281)
Q Consensus        81 ~~~yKVv~~~~~~~~~~~eVys~~~~~Wr~-------------~v~~nG~-yWl~~~~~-~~~~~~IlsFD~~~e~f~~i  145 (281)
                         =||+.+.. .+...+++|+..+++|+.             .+..||. |-+..... ......+..||..+.+|..+
T Consensus        87 ---g~i~v~Gg-~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~  162 (387)
T d1k3ia3          87 ---GQIVVTGG-NDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSL  162 (387)
T ss_dssp             ---SCEEEECS-SSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEE
T ss_pred             ---CcEEEeec-CCCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeec
Confidence               13333322 223467899999999977             2345778 55543221 11235688999999999987


Q ss_pred             e
Q 041236          146 L  146 (281)
Q Consensus       146 ~  146 (281)
                      +
T Consensus       163 ~  163 (387)
T d1k3ia3         163 P  163 (387)
T ss_dssp             T
T ss_pred             C
Confidence            3