Citrus Sinensis ID: 041250

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
Protein Sequence
MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASKLLLKDNPLSEYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAKIFADS
Secondary Structure (PSIPRED)
cHHHHHHHHcccHHHHHccccccHHHHHHHccccccccccHHHHHccccccccccccccccccccccccccccccccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEcccHHHHHHHHHHHcccccEEEcccHHHHHcccccccccEEEcccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccEEEEEEEEEcccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cHHHHHHHccHHHHHHHccccccHHHHHHHccccccHHHHHHHHHHHHHccccccccEEEEccHHHHHHHccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEccccccHHHHHHHHccccEEEEEEcHHHHcccccccccEEEEEcccccccccccEEEccccHHHccHHHHHHHHHHHHHHcccccEccEEEEEEEEEccccccccccEEEEEEEHHHHHccccccccHHHHHHHHHcc
Coil and Loop (DISEMBL)
mtlkcafqlgipdiinkhgkpmtLNELVSALTINLSKTQCFFAQQKLVssgnnndeeqgYVLTNAsklllkdnplseyagdesklnNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAfpklectcfdlphvvngleSDLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAKIFADS
Flexible Loop (DISEMBL)
MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASKLLLKDNPLSEYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDEECVKILKKckeaitrdgkkrkviikdmikenrkkdykSIETQLFFEMFMMVLLTGTERDEKEWAKIFADS
Low Complexity Region (SEG)
MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASKLLLKDNPLSEYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVgggtgtaakaiakaFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAKIFADS
Disordered region (IsUnstruct)
***KCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLV**********GYVLTNASKLLLK*************LNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAKI****
Disordered Region (DISOPRED)
MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASKLLLKDNPLSEYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAKIFADS
Disordered Region (DISEMBL)
MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASKLLLKDNPLSEYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAKIFADS
Disordered Region (DISPRO)
MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASKLLLKDNPLSEYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAKIFADS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASKLLLKDNPLSEYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAKIFADS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	259	2.2.26 [Sep-21-2011]
B6VJS4	357	Trans-resveratrol di-O-me	no	no	0.996	0.722	0.522	2e-80
Q6VMW0	366	8-hydroxyquercetin 8-O-me	N/A	no	0.996	0.704	0.446	7e-61
Q8GSN1	348	Myricetin O-methyltransfe	N/A	no	0.992	0.738	0.430	7e-59
B0EXJ8	355	Tabersonine 16-O-methyltr	N/A	no	0.984	0.718	0.432	1e-58
Q93WU2	357	Eugenol O-methyltransfera	N/A	no	0.984	0.714	0.412	1e-55
Q93WU3	356	Chavicol O-methyltransfer	N/A	no	0.976	0.710	0.406	2e-53
O24305	360	6a-hydroxymaackiain methy	N/A	no	0.992	0.713	0.408	3e-52
P0DH60	360	6a-hydroxymaackiain methy	N/A	no	0.992	0.713	0.401	6e-50
O24529	352	Isoflavone-7-O-methyltran	N/A	no	0.988	0.727	0.394	9e-50
O22308	352	Isoflavone-7-O-methyltran	N/A	no	0.988	0.727	0.394	9e-50

>sp|B6VJS4|ROMT_VITVI Trans-resveratrol di-O-methyltransferase OS=Vitis vinifera GN=ROMT PE=1 SV=2

 Score =  298 bits (764), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 161/308 (52%), Positives = 193/308 (62%), Gaps = 50/308 (16%)

Query: 1   MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQK-LVSSG-------N 52
           M+LKCA QLGIPDII+ HGKPMTL ELV+ L ++  ++QC +   + LV SG        
Sbjct: 30  MSLKCAIQLGIPDIIHNHGKPMTLPELVAKLPVHPKRSQCVYRLMRILVHSGFLAAQRVQ 89

Query: 53  NNDEEQGYVLTNASKLLLKDNPLS------------------------------------ 76
              EE+GYVLT+AS+LLL D+ LS                                    
Sbjct: 90  QGKEEEGYVLTDASRLLLMDDSLSIRPLVLAMLDPILTKPWHYLSAWFQNDDPTPFHTAY 149

Query: 77  -----EYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKA 131
                +YAG E +LNN FNEAMASDARL TSV++++ + VF GLNSLVDVGGGTG  AKA
Sbjct: 150 ERSFWDYAGHEPQLNNSFNEAMASDARLLTSVLLKEGQGVFAGLNSLVDVGGGTGKVAKA 209

Query: 132 IAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDEEC 191
           IA AFP L CT  DL HVV GL+    NL Y  GDMF+AI PA A+LLKWIL DW++EEC
Sbjct: 210 IANAFPHLNCTVLDLSHVVAGLQGS-KNLNYFAGDMFEAIPPADAILLKWILHDWSNEEC 268

Query: 192 VKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKE 251
           VKILK+C+EAI       KVII DMI    + DYKS ETQLFF+M MM+   G ERDE E
Sbjct: 269 VKILKRCREAIPSKENGGKVIIIDMIMMKNQGDYKSTETQLFFDMTMMIFAPGRERDENE 328

Query: 252 WAKIFADS 259
           W K+F D+
Sbjct: 329 WEKLFLDA 336

Catalyzes the biosynthesis of pterostilbene from resveratrol. Pterostilbene has both antifungal and pharmacological properties. Also has activity toward resveratrol monomethyl ether (RME).
Vitis vinifera (taxid: 29760)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 4EC: 0

>sp|Q6VMW0|Q8OMT_MENPI 8-hydroxyquercetin 8-O-methyltransferase OS=Mentha piperita GN=OMT2 PE=1 SV=1

 Score =  234 bits (596), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 141/316 (44%), Positives = 187/316 (59%), Gaps = 58/316 (18%)

Query: 1   MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQK-LVSSG-------- 51
           M+LKCA QLGIPD I+KHG P+TL++L  AL IN +K+   F   + LV SG        
Sbjct: 31  MSLKCAIQLGIPDAIHKHGNPITLSQLADALNINKAKSHGLFRLMRILVHSGFFDKVKVK 90

Query: 52  ------NNNDEEQGYVLTNASKLLLKDNPLS----------------------------- 76
                 +  +EE  Y LT AS+LLL+  PLS                             
Sbjct: 91  VKVEGEDEEEEEDAYSLTPASRLLLRSEPLSVAPFALAMSDPVYTETWHHLSEWFRNDAV 150

Query: 77  ------------EYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGG 124
                       EYA  + +LN  FNEAMA DA    S++  +C+ +F+GL S+VDVGGG
Sbjct: 151 AAFDTKYGMTFPEYAVADDRLNVLFNEAMACDAGFVNSILTTECREIFDGLESMVDVGGG 210

Query: 125 TGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILL 184
           TG  AK IA AFP +ECT  DLP+VV GL+    NL +V GDMF  I  A A+ +K+IL 
Sbjct: 211 TGATAKGIAAAFPGMECTVLDLPNVVGGLKGS-ENLSFVSGDMFDFIPHADAIFMKFILH 269

Query: 185 DWNDEECVKILKKCKEAITRDGKK-RKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLT 243
           DWNDEECVKILKKCKEAI+R     RK+I+ +++ E+ K+ +++ ET+LFF+M M+ ++T
Sbjct: 270 DWNDEECVKILKKCKEAISRSNNSCRKIILVEIVMEDEKETHEATETKLFFDMQMLAIIT 329

Query: 244 GTERDEKEWAKIFADS 259
           G ER EKEW K+F D+
Sbjct: 330 GKERSEKEWGKLFFDA 345

8-O-methyltransferase active on various hydroxylated flavonoid substrates, including 7,8,3'4'-tetrahydroxy-flavone, 7,8,4'-trihydroxy-flavone and 8-hydroxy-flavone 7-methyl ether.

Mentha piperita (taxid: 34256)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 8

EC: 8

>sp|Q8GSN1|MOMT_CATRO Myricetin O-methyltransferase OS=Catharanthus roseus PE=1 SV=1

 Score =  227 bits (578), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 130/302 (43%), Positives = 183/302 (60%), Gaps = 45/302 (14%)

Query: 2   TLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQK-LVSSGNNNDEEQG- 59
           +LKCA QLGIPD I+ HGKPM L++L ++L IN SK    +   + LV++G  ++EE+  
Sbjct: 27  SLKCAVQLGIPDAIHSHGKPMALSDLTNSLPINPSKAPYIYRLMRILVAAGYFSEEEKNV 86

Query: 60  YVLTNASKLLLKDNPLSEYA---------------------------------------- 79
           Y LT  ++LLLK++PL+  +                                        
Sbjct: 87  YSLTPFTRLLLKNDPLNSISMVLGVNQIAELKAWNAMSEWFQNEDLTAFETAHGKNFWDF 146

Query: 80  GDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKL 139
           G E K    F+  MA+D+ L + ++I +   +FEGL+SLVDVGGGTGT AKAIAK+FP L
Sbjct: 147 GAEDKYGKNFDGVMAADSILVSKMLIPEFNYLFEGLDSLVDVGGGTGTIAKAIAKSFPDL 206

Query: 140 ECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDEECVKILKKCK 199
           +CT FDLPHVV  LES   NL++VGGDMF+ I  A A+LLKWIL DW DEECVK+LK C+
Sbjct: 207 KCTVFDLPHVVANLEST-ENLEFVGGDMFEKIPSANAILLKWILHDWKDEECVKVLKMCR 265

Query: 200 EAITRDGKKRKVIIKDMIKENRKK--DYKSIETQLFFEMFMMVLLTGTERDEKEWAKIFA 257
           +AI    K  KVI+ + +  + KK  + ++++ Q+  ++ MMV  T  ER E+EWA +F 
Sbjct: 266 KAIPEKEKGGKVILIETVLMDSKKHENEEAVKAQISSDIDMMVFFTAKERTEEEWATLFR 325

Query: 258 DS 259
           ++
Sbjct: 326 EA 327

Methylates myricetin and dihydromyricetin at 2 sites. Inactive towards 16-hydroxytabersonine, the phenylpropanoids 5-hydroxyferulate, caffeate and their CoA-esters, flavones and flavonones possessing 2 or 3 B-ring hydroxyl groups.

Catharanthus roseus (taxid: 4058)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 4

EC: 9

>sp|B0EXJ8|HTOMT_CATRO Tabersonine 16-O-methyltransferase OS=Catharanthus roseus GN=16OMT PE=1 SV=1

 Score =  226 bits (576), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 134/310 (43%), Positives = 180/310 (58%), Gaps = 55/310 (17%)

Query: 2   TLKCAFQLGIPDIINKHGKPMTLNELVSALT--INLSKTQCFFAQQKLVSSGNNNDEEQG 59
           +LKCA +LGIPD I+ HGKP+TL+EL +AL   ++ SK    +   ++++      EEQ 
Sbjct: 27  SLKCAVKLGIPDTIDNHGKPITLSELTNALVPPVHPSKAPFIYRLMRVLAKNGFCSEEQL 86

Query: 60  -------YVLTNASKLLLKDNPLS------------------------------------ 76
                  Y LT +S++LLK  PL+                                    
Sbjct: 87  DGETEPLYSLTPSSRILLKKEPLNLRGIVLTMADPVQLKAWESLSDWYQNEDDSSTAFET 146

Query: 77  -------EYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAA 129
                   Y+ +  +   FFNEAMASD++L + ++I + K +FEGL SLVD+GGGTGT A
Sbjct: 147 AHGKNFWGYSSEHMEHAEFFNEAMASDSQLISKLLIGEYKFLFEGLASLVDIGGGTGTIA 206

Query: 130 KAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDE 189
           KAIAK FP+L+CT FDLPHVV  LES   N+++V GDMF+ I  A A+ LKWIL DWNDE
Sbjct: 207 KAIAKNFPQLKCTVFDLPHVVANLESK-ENVEFVAGDMFEKIPSANAIFLKWILHDWNDE 265

Query: 190 ECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDE 249
           +CVKILK CK+AI   G   KVII DM+  + KKD   ++TQ   +M M+V     ER E
Sbjct: 266 DCVKILKSCKKAIPAKGG--KVIIIDMVMYSDKKDDHLVKTQTSMDMAMLVNFAAKERCE 323

Query: 250 KEWAKIFADS 259
           KEWA +F ++
Sbjct: 324 KEWAFLFKEA 333

16-O-methyltransferase involved in the biosynthesis of vindoline. Highly specific for 16-hydroxytabersonine. No activity with tabersonine, 3-hydroxytyramine, 4-hydroxytyramine, 5-hydroxytryptamine (5HT), 2,3-dihydro-3-hydroxytabersonine, lochnericine, hoerhammericine, 16-hydroxy-2,3-dihydro-3-hydroxytabersonine, 16-hydroxylochnericine, 16-hydroxyhoerhammericine, quercetin, kaempferol and caffeic acid as substrates.

Catharanthus roseus (taxid: 4058)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 4

>sp|Q93WU2|EOMT1_OCIBA Eugenol O-methyltransferase OS=Ocimum basilicum GN=EOMT1 PE=1 SV=1

 Score =  216 bits (551), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 127/308 (41%), Positives = 171/308 (55%), Gaps = 53/308 (17%)

Query: 1   MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQK-------LVSSGNN 53
           M+LKCA QLGIPDI++KHG+PMTL++L+ ++ IN  KTQCF    +        +   N+
Sbjct: 33  MSLKCAIQLGIPDILHKHGRPMTLSQLLQSIPINKEKTQCFQRLMRALVNSNFFIEENNS 92

Query: 54  NDEEQGYVLTNASKLLLKDNPLS------------------------------------- 76
           N++E  Y LT AS LLLK+ PL+                                     
Sbjct: 93  NNQEVCYWLTPASCLLLKEAPLTVTPLVQVVLDPTFTNPWHHMSEWFTHEKHATQFEAAN 152

Query: 77  -----EYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKA 131
                E   +E     FF+EAM+ D+RL   V  +  K+V EG+ +LVDVGGG GT AKA
Sbjct: 153 GCTFWEKLANEPSKGRFFDEAMSCDSRLIAHVFTKDYKHVIEGIRTLVDVGGGNGTMAKA 212

Query: 132 IAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDEEC 191
           I +A P ++CT  DLPHVV GLES   NL Y+GGDMF++I  A A+LLK I+ DW+D E 
Sbjct: 213 IVEAMPTIKCTVIDLPHVVAGLEST-DNLNYIGGDMFQSIPSADAILLKSIIHDWDDVEG 271

Query: 192 VKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKE 251
           +KILKKCK+A+   GK   +    ++  N   D + +E QL F+M MM      ER   E
Sbjct: 272 LKILKKCKDAVVMGGKVIII--DVVVGVNHDID-EVLEDQLHFDMAMMCYFNAKERTMSE 328

Query: 252 WAKIFADS 259
           W K+  D+
Sbjct: 329 WEKLIYDA 336

Phenylpropene O-methyltransferase that catalyzes the methylation of the para-4-hydroxyl of eugenol to methyleugenol. Can also convert chavicol to methylchavicol but with less affinity.

Ocimum basilicum (taxid: 39350)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 4

EC: 6

>sp|Q93WU3|CVMT1_OCIBA Chavicol O-methyltransferase OS=Ocimum basilicum GN=CVOMT1 PE=1 SV=1

 Score =  208 bits (530), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 124/305 (40%), Positives = 173/305 (56%), Gaps = 52/305 (17%)

Query: 1   MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCF-FAQQKLVSSG-----NNN 54
           M+LKCA QLGIPDI++KH  PMTL++L+ A+ IN  K+Q F    + LV+S      N+N
Sbjct: 33  MSLKCAIQLGIPDILHKHDHPMTLSQLLKAIPINKEKSQSFQRLMRALVNSNFFIEENSN 92

Query: 55  DEEQGYVLTNASKLLLKDNPLS-------------------------------------- 76
           ++E  Y LT AS+LLLK  PL+                                      
Sbjct: 93  NQEVCYWLTPASRLLLKGAPLTVAPLVQVVLDPTFTNPWHYMSEWFKHENHATQFEAANG 152

Query: 77  ----EYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAI 132
               E   ++  +  FF+EAM+ D+RL   V+ +  K+V +G+ +LVDVGGG GT AKAI
Sbjct: 153 CTFWEKLANKPSMGRFFDEAMSCDSRLVAHVLTKDYKHVIDGIRTLVDVGGGNGTMAKAI 212

Query: 133 AKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDEECV 192
            +A P ++CT  DLPHVV GLES    L Y+GGDMF++I  A A+LLK+I+ DW+DEE +
Sbjct: 213 VEAVPTMKCTVLDLPHVVAGLEST-DKLSYIGGDMFQSIPSADAILLKFIIHDWDDEEGL 271

Query: 193 KILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEW 252
           KILK+CK+A+   GK   + +   +  N   D + +E QL F+M MM      ER   EW
Sbjct: 272 KILKRCKDAVGIGGKVIIIDVV--VGVNHDVD-EVLEDQLHFDMAMMSYFNAKERTMNEW 328

Query: 253 AKIFA 257
            K+ +
Sbjct: 329 EKLIS 333

Phenylpropene O-methyltransferase that catalyzes the methylation of the para-4-hydroxyl of chavicol to methylchavicol. Can also convert eugenol to methyleugenol but with less affinity.

Ocimum basilicum (taxid: 39350)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 4

EC: 6

>sp|O24305|M3OM1_PEA 6a-hydroxymaackiain methyltransferase 1 OS=Pisum sativum GN=HMM1 PE=1 SV=1

 Score =  204 bits (520), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 127/311 (40%), Positives = 169/311 (54%), Gaps = 54/311 (17%)

Query: 1   MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSS---------- 50
           M LK A +LGI D I+ HGKPMTL EL S+L ++ SK    +   +L++           
Sbjct: 31  MALKSAMELGIADAIHNHGKPMTLPELSSSLKLHPSKVNILYRFLRLLTHNGFFAKTTVK 90

Query: 51  GNNNDEEQGYVLTNASKLLL---------------------------------KDNPLSE 77
            N  +EE  YVLT +SKLL+                                 K+  L E
Sbjct: 91  SNEGEEETAYVLTPSSKLLVSGKSTCLSSLVKGALHPSSLDMWGVSKKWFHEDKEQTLFE 150

Query: 78  YAGDESKLN---------NFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTA 128
            A  E+  +         + F +AMA+D+RL   + IQ+ K+VFEGL SLVDV GGTG  
Sbjct: 151 CATGENYWDFLNKDSDSLSMFQDAMAADSRLF-KLAIQENKHVFEGLESLVDVAGGTGGV 209

Query: 129 AKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWND 188
           AK I +AFP ++CT FD P VV  L  +  NL +VGGDMFK++  A AVLLKW+L DWND
Sbjct: 210 AKLIHEAFPHIKCTVFDQPQVVGNLTGN-ENLNFVGGDMFKSVPSADAVLLKWVLHDWND 268

Query: 189 EECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERD 248
           E  +KILK  KEAI+  GK  KVII D+  +    D    E QL +++ M+ +  G ER 
Sbjct: 269 ELSLKILKNSKEAISHKGKDGKVIIIDISIDENSDDRGLTELQLEYDVVMLTMFLGKERT 328

Query: 249 EKEWAKIFADS 259
           +KEW K+  D+
Sbjct: 329 KKEWEKLIYDA 339

Methyltransferase involved in the phytoalexin pisatin biosynthesis. Has both 3- and 4'-O-methyltransferase activities. Can use (+)-6a-hydroxymaackiain, 2,7,4'-trihydroxyisoflavanone and with much less activity (+)-medicarpin as substrates, but not (-)-6a-hydroxymaackiain, daidzein, formononetin or isoliquiritigenin. May be involved in formononetin biosynthesis.

Pisum sativum (taxid: 3888)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 6

>sp|P0DH60|M3OM2_PEA 6a-hydroxymaackiain methyltransferase 2 OS=Pisum sativum GN=HMM2 PE=1 SV=1

 Score =  197 bits (501), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 125/311 (40%), Positives = 171/311 (54%), Gaps = 54/311 (17%)

Query: 1   MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSS---------- 50
           M LK A +LGI D I+ HGKPMTL EL S+L ++ SK    +   +L++           
Sbjct: 31  MALKSAVELGIADAIHNHGKPMTLPELASSLKLHPSKVNILYRFLRLLTHNGFFAKTTVK 90

Query: 51  GNNNDEEQGYVLTNASKLLLKD-------------NPLS--------------------- 76
            N  +EE  YVLT +SKLL+               +P+S                     
Sbjct: 91  SNGEEEETAYVLTPSSKLLVSGKSTCLSSVVKGALHPISLDLWGVSKKWFHEDKEQTLFE 150

Query: 77  --------EYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTA 128
                   ++   +S   + F +AMA+D+RL   + IQ+ K+VFEGL SLVDV GGTG  
Sbjct: 151 CATGENYWDFLNKDSDYLSIFQDAMAADSRLF-KLAIQENKHVFEGLESLVDVAGGTGGV 209

Query: 129 AKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWND 188
           AK I +AFP ++CT FD P VV  L  +  NL +V GDMFK++  A AVLLKW+L DWND
Sbjct: 210 AKLIHEAFPHIKCTVFDQPQVVGNLTGN-ENLNFVSGDMFKSVPSADAVLLKWVLHDWND 268

Query: 189 EECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERD 248
           E  +KILKK KEAI+  GK  KVII D+  ++   D+   E QL +++ M+ +  G ER 
Sbjct: 269 ELSLKILKKSKEAISHKGKDGKVIIIDISIDDNSDDHGLTELQLEYDVVMLTMFLGKERT 328

Query: 249 EKEWAKIFADS 259
           +KEW K+  D+
Sbjct: 329 KKEWEKLIYDA 339

3-O-methyltransferase involved in the phytoalexin pisatin biosynthesis. Can use (+)-6a-hydroxymaackiain, (+)-maackiain and with a lower activity (+)-medicarpin and 2,7,4'-trihydroxyisoflavanone as substrates, but not (-)-6a-hydroxymaackiain, daidzein, formononetin or isoliquiritigenin.

Pisum sativum (taxid: 3888)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|O24529|7OMT8_MEDSA Isoflavone-7-O-methyltransferase 8 OS=Medicago sativa PE=1 SV=1

 Score =  197 bits (500), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 120/304 (39%), Positives = 173/304 (56%), Gaps = 48/304 (15%)

Query: 1   MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNN----NDE 56
           M+LK A ++ IP+II  HGKP++L+ LVS L +  SK        + ++          E
Sbjct: 31  MSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLMRYLAHNGFFEIITKE 90

Query: 57  EQGYVLTNASKLLLKDN-----PLSEYAGDES---------------------------- 83
           E+ Y LT AS+LL++ +     P+ E   D +                            
Sbjct: 91  EESYALTVASELLVRGSDLCLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGF 150

Query: 84  --------KLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKA 135
                   + N  FN+AMASD++L  ++ ++ C  VF+GL S+VDVGGGTGT AK I + 
Sbjct: 151 WDFLDKNPEYNTSFNDAMASDSKL-INLALRDCDFVFDGLESIVDVGGGTGTTAKIICET 209

Query: 136 FPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDEECVKIL 195
           FPKL+C  FD P VV  L S   NL YVGGDMF +I  A AVLLK+IL +W D++C++IL
Sbjct: 210 FPKLKCIVFDRPQVVENL-SGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRIL 268

Query: 196 KKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAKI 255
           KKCKEA+T DGK+ KV I DM+ + +K + +  + +L  ++  M  L G ER+E+EW K+
Sbjct: 269 KKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDV-NMACLNGKERNEEEWKKL 327

Query: 256 FADS 259
           F ++
Sbjct: 328 FIEA 331

Transfers a methyl group to 7-hydroxyls of the isoflavones daidzein, genistein and 6,7,4'-trihydroxyisoflavone. Can also methylate (+)6a-hydroxymaackiain with lower efficiency.

Medicago sativa (taxid: 3879)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

EC: 0

>sp|O22308|7OMT6_MEDSA Isoflavone-7-O-methyltransferase 6 OS=Medicago sativa PE=2 SV=1

 Score =  197 bits (500), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 120/304 (39%), Positives = 173/304 (56%), Gaps = 48/304 (15%)

Query: 1   MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNN----NDE 56
           M+LK A ++ IP+II  HGKP++L+ LVS L +  SK        + ++          E
Sbjct: 31  MSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLMRYLAHNGFFEIITKE 90

Query: 57  EQGYVLTNASKLLLKDN-----PLSEYAGDES---------------------------- 83
           E+ Y LT AS+LL++ +     P+ E   D +                            
Sbjct: 91  EESYALTVASELLVRGSDLCLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGF 150

Query: 84  --------KLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKA 135
                   + N  FN+AMASD++L  ++ ++ C  VF+GL S+VDVGGGTGT AK I + 
Sbjct: 151 WDFLDKNPEYNTSFNDAMASDSKL-INLALRDCDFVFDGLESIVDVGGGTGTTAKIICET 209

Query: 136 FPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDEECVKIL 195
           FPKL+C  FD P VV  L S   NL YVGGDMF +I  A AVLLK+IL +W D++C++IL
Sbjct: 210 FPKLKCIVFDRPQVVENL-SGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRIL 268

Query: 196 KKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAKI 255
           KKCKEA+T DGK+ KV I DM+ + +K + +  + +L  ++  M  L G ER+E+EW K+
Sbjct: 269 KKCKEAVTNDGKRGKVTIIDMVIDEKKDENQVTQIKLLMDV-NMACLNGKERNEEEWKKL 327

Query: 256 FADS 259
           F ++
Sbjct: 328 FIEA 331

Transfers a methyl group to 7-hydroxyls of the isoflavones daidzein, genistein and 6,7,4'-trihydroxyisoflavone. Can also methylate (+)6a-hydroxymaackiain with lower efficiency.

Medicago sativa (taxid: 3879)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

EC: 0

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	259
225446491	357	PREDICTED: 8-hydroxyquercetin 8-O-methyl	0.980	0.711	0.564	2e-89
147816431	357	hypothetical protein VITISV_020020 [Viti	0.980	0.711	0.560	8e-89
225446489	357	PREDICTED: 8-hydroxyquercetin 8-O-methyl	0.996	0.722	0.548	5e-86
123718166	346	putative orcinol O-methyltransferase [Ro	0.976	0.731	0.551	1e-85
123718196	346	putative orcinol O-methyltransferase [Ro	0.976	0.731	0.551	1e-85
123718296	346	putative orcinol O-methyltransferase [Ro	0.976	0.731	0.551	1e-85
123718210	346	putative orcinol O-methyltransferase [Ro	0.976	0.731	0.551	1e-85
224146520	357	flavonoid o-methyltransferase related [P	0.988	0.717	0.569	2e-85
123718188	346	putative orcinol O-methyltransferase [Ro	0.976	0.731	0.548	2e-85
123718174	346	putative orcinol O-methyltransferase [Ro	0.976	0.731	0.548	2e-85

>gi|225446491|ref|XP_002278211.1| PREDICTED: 8-hydroxyquercetin 8-O-methyltransferase [Vitis vinifera]

 Score =  334 bits (856), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 176/312 (56%), Positives = 209/312 (66%), Gaps = 58/312 (18%)

Query: 1   MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQC------------FFAQQKLV 48
           M+LKCA QLGIPDII+ HGKPMTL ELV+ L I+  K  C            FFA+QK+ 
Sbjct: 30  MSLKCAIQLGIPDIIHNHGKPMTLPELVAKLPIHPKKVWCVYRLMRILVQSGFFARQKVE 89

Query: 49  SSGNNNDEEQGYVLTNASKLLLKDNPLS-------------------------------- 76
            S    ++E+GYVLT+AS+LLL+D+PLS                                
Sbjct: 90  ES----EQEEGYVLTHASRLLLEDDPLSVRPFLLAMLDPILTKPWHYVSAWFQNDDPTPF 145

Query: 77  ---------EYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGT 127
                    +Y G E K+NNFFNEAMASDARL TSV+I+ CK VFEGLNSLVDVGGGTGT
Sbjct: 146 DTAHGRTFWDYGGHEPKINNFFNEAMASDARLVTSVLIKDCKGVFEGLNSLVDVGGGTGT 205

Query: 128 AAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWN 187
            AKAIA AFP L CT FDLPHVV GLE    NL Y+GGDMFK I PA A+LLKWIL DWN
Sbjct: 206 VAKAIANAFPHLNCTVFDLPHVVAGLEGS-KNLNYLGGDMFKGIPPADAILLKWILHDWN 264

Query: 188 DEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTER 247
           DEECVKIL++C++AI    K  KVII DM+ EN+K D +S+ETQLFF+M MM+L+TG ER
Sbjct: 265 DEECVKILQQCRQAIPSKEKGGKVIIIDMMMENQKGDDESMETQLFFDMLMMILVTGQER 324

Query: 248 DEKEWAKIFADS 259
           +EKEW K+F D+
Sbjct: 325 NEKEWEKLFLDA 336

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147816431|emb|CAN61955.1| hypothetical protein VITISV_020020 [Vitis vinifera]

 Score =  332 bits (852), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 175/312 (56%), Positives = 208/312 (66%), Gaps = 58/312 (18%)

Query: 1   MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQC------------FFAQQKLV 48
           M+LKCA QLGIPDII+ HGKPMTL ELV+ L I+  K  C            FFA+QK+ 
Sbjct: 30  MSLKCAIQLGIPDIIHNHGKPMTLPELVAKLPIHPKKVWCVYRLMRILVQSGFFARQKVE 89

Query: 49  SSGNNNDEEQGYVLTNASKLLLKDNPLS-------------------------------- 76
            S    ++E+GYVLT+AS+LLL+D+PLS                                
Sbjct: 90  ES----EQEEGYVLTHASRLLLEDDPLSVRPFLLAMLDPILTKPWHYVSAWFQNDDPTPF 145

Query: 77  ---------EYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGT 127
                    +Y G E KJNNFFNEAMASDARL TS +I+ CK VFEGLNSLVDVGGGTGT
Sbjct: 146 DTAHGXTFWDYGGHEPKJNNFFNEAMASDARLVTSXLIKDCKGVFEGLNSLVDVGGGTGT 205

Query: 128 AAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWN 187
            AKAIA AFP L CT FDLPHVV GLE    NL Y+GGDMFK I PA A+LLKWIL DWN
Sbjct: 206 VAKAIANAFPHLNCTVFDLPHVVAGLEGS-KNLNYLGGDMFKGIPPADAILLKWILHDWN 264

Query: 188 DEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTER 247
           DEECVKIL++C++AI    K  KVII DM+ EN+K D +S+ETQLFF+M MM+L+TG ER
Sbjct: 265 DEECVKILQQCRQAIPSKEKGGKVIIIDMMMENQKGDDESMETQLFFDMLMMILVTGQER 324

Query: 248 DEKEWAKIFADS 259
           +EKEW K+F D+
Sbjct: 325 NEKEWEKLFLDA 336

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446489|ref|XP_002278190.1| PREDICTED: 8-hydroxyquercetin 8-O-methyltransferase [Vitis vinifera]

 Score =  323 bits (827), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 169/308 (54%), Positives = 207/308 (67%), Gaps = 50/308 (16%)

Query: 1   MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKL-VSSG-------N 52
           M+LKCA +LGIPDII+ HGKPMTL+ELV+ L +N  KT+C +   +L V SG        
Sbjct: 30  MSLKCAIELGIPDIIHNHGKPMTLSELVAELPVNPEKTKCVYRLMRLLVQSGFFTRKRVQ 89

Query: 53  NNDEEQGYVLTNASKLLLKDNPLS------------------------------------ 76
            + +E+GYVLT+AS+LLLKD+PLS                                    
Sbjct: 90  ESGQEEGYVLTHASRLLLKDDPLSARPFLLAMLDPVLITPWQYVSAWFQNDDPTPFDTAH 149

Query: 77  -----EYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKA 131
                +YAG E KLNNFFNEAMASDARL TSV+I+ CK +F GLNSLVDVGGGTGT A+A
Sbjct: 150 GRTFWDYAGHEPKLNNFFNEAMASDARLVTSVLIKDCKGIFVGLNSLVDVGGGTGTVARA 209

Query: 132 IAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDEEC 191
           IA AFP L CT  DLPHVV GLE    NL Y+ GDMF+AI PA A+LLKWIL DWN +EC
Sbjct: 210 IANAFPHLNCTVLDLPHVVAGLEGS-KNLNYLAGDMFEAIPPADAILLKWILHDWNHDEC 268

Query: 192 VKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKE 251
           VKILK+C++AI    K  KVII DM+ EN+K D +SIETQLF++M MM++LTG ER+ K+
Sbjct: 269 VKILKRCRDAIPSKEKGGKVIIIDMMMENQKADDESIETQLFWDMLMMIVLTGQERNIKD 328

Query: 252 WAKIFADS 259
           W K+F D+
Sbjct: 329 WEKLFFDA 336

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|123718166|emb|CAJ65598.1| putative orcinol O-methyltransferase [Rosa chinensis]

 Score =  322 bits (825), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 172/312 (55%), Positives = 204/312 (65%), Gaps = 59/312 (18%)

Query: 1   MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQC------------FFAQQKLV 48
           M+LK A QLGIPDIINKHG PMTL+EL SAL I+ +K+              FFA++KL 
Sbjct: 30  MSLKSAIQLGIPDIINKHGYPMTLSELTSALPIHPTKSHSVYRLMRILVHSGFFAKKKLS 89

Query: 49  SSGNNNDEEQGYVLTNASKLLLKDNPLS-------------------------------- 76
            +     +E+GY LTNAS+LLLKD+PLS                                
Sbjct: 90  KT-----DEEGYTLTNASQLLLKDHPLSLTPFLTAMLDPVLTKPWNYLSTWFQNDDPTPF 144

Query: 77  ---------EYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGT 127
                    +Y   +  + +FFN+AMASDARL TSV+I  CK VFEGL SLVDVGGGTGT
Sbjct: 145 DTAHGMTFWDYGNHQPSIAHFFNDAMASDARLVTSVIIDDCKGVFEGLESLVDVGGGTGT 204

Query: 128 AAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWN 187
            AKAIA AFP +ECT  DLPHVV  L+    NLKY GGDMF+A+ PA  VLLKWIL DWN
Sbjct: 205 VAKAIADAFPYIECTVLDLPHVVANLQGS-KNLKYTGGDMFEAVPPADTVLLKWILHDWN 263

Query: 188 DEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTER 247
           DEECVKILK+ +EAITR  KK KVII DM+ EN+K D +SIETQLFF+M MM L+TG ER
Sbjct: 264 DEECVKILKRSREAITRKDKKGKVIIIDMMMENQKGDEESIETQLFFDMLMMALVTGKER 323

Query: 248 DEKEWAKIFADS 259
           +EKEWAK+F D+
Sbjct: 324 NEKEWAKLFTDA 335

Source: Rosa chinensis

Species: Rosa chinensis

Genus: Rosa

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|123718196|emb|CAJ65613.1| putative orcinol O-methyltransferase [Rosa chinensis var. spontanea] gi|123718208|emb|CAJ65619.1| putative orcinol O-methyltransferase [Rosa chinensis var. spontanea]

 Score =  322 bits (824), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 172/312 (55%), Positives = 204/312 (65%), Gaps = 59/312 (18%)

Query: 1   MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQC------------FFAQQKLV 48
           M+LK A QLGIPDIINKHG PMTL+EL SAL I+ +K+              FFA++KL 
Sbjct: 30  MSLKSAIQLGIPDIINKHGYPMTLSELTSALPIHPTKSHSVYRLMRILVHSGFFAKKKLS 89

Query: 49  SSGNNNDEEQGYVLTNASKLLLKDNPLS-------------------------------- 76
            +     +E+GY LTNAS+LLLKD+PLS                                
Sbjct: 90  KT-----DEEGYTLTNASQLLLKDHPLSLTPFLTAMLDPVLTKPWNYLSTWFQNDDPTPF 144

Query: 77  ---------EYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGT 127
                    +Y   +  + +FFN+AMASDARL TSV+I  CK VFEGL SLVDVGGGTGT
Sbjct: 145 DTAHGMTFWDYGNHQPSIAHFFNDAMASDARLVTSVIIDDCKGVFEGLESLVDVGGGTGT 204

Query: 128 AAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWN 187
            AKAIA AFP +ECT  DLPHVV  L+    NLKY GGDMF+A+ PA  VLLKWIL DWN
Sbjct: 205 VAKAIADAFPYIECTVLDLPHVVADLQGS-KNLKYTGGDMFEAVPPADTVLLKWILHDWN 263

Query: 188 DEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTER 247
           DEECVKILK+ +EAITR  KK KVII DM+ EN+K D +SIETQLFF+M MM L+TG ER
Sbjct: 264 DEECVKILKRSREAITRKDKKGKVIIIDMMMENQKGDEESIETQLFFDMLMMALVTGKER 323

Query: 248 DEKEWAKIFADS 259
           +EKEWAK+F D+
Sbjct: 324 NEKEWAKLFTDA 335

Source: Rosa chinensis var. spontanea

Species: Rosa chinensis

Genus: Rosa

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|123718296|emb|CAJ65663.1| putative orcinol O-methyltransferase [Rosa odorata]

 Score =  322 bits (824), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 172/312 (55%), Positives = 204/312 (65%), Gaps = 59/312 (18%)

Query: 1   MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQC------------FFAQQKLV 48
           M+LK A QLGIPDIINKHG PMTL+EL SAL I+ +K+              FFA++KL 
Sbjct: 30  MSLKSAIQLGIPDIINKHGYPMTLSELTSALPIHPTKSHSVYRLMRILVHSGFFAKKKLS 89

Query: 49  SSGNNNDEEQGYVLTNASKLLLKDNPLS-------------------------------- 76
            +     +E+GY LTNAS+LLLKD+PLS                                
Sbjct: 90  KT-----DEEGYTLTNASQLLLKDHPLSLTPFLTAMLDPVLTKPWNYLSTWFQNDDPTPF 144

Query: 77  ---------EYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGT 127
                    +Y   +  + +FFN+AMASDARL TSV+I  CK VFEGL SLVDVGGGTGT
Sbjct: 145 DTAHGMTFWDYGNHQPSIAHFFNDAMASDARLVTSVIIDDCKGVFEGLESLVDVGGGTGT 204

Query: 128 AAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWN 187
            AKAIA AFP +ECT  DLPHVV  L+    NLKY GGDMF+AI PA  VLLKWIL DWN
Sbjct: 205 VAKAIADAFPHIECTVLDLPHVVADLQGS-KNLKYTGGDMFEAIPPANTVLLKWILHDWN 263

Query: 188 DEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTER 247
           DEECVKILK+ +EAIT + KK KVII DM+ EN+K D +SIETQLFF+M MM L+TG ER
Sbjct: 264 DEECVKILKQSREAITSEDKKGKVIIIDMMMENQKGDEESIETQLFFDMLMMALVTGKER 323

Query: 248 DEKEWAKIFADS 259
           +EKEWAK+F D+
Sbjct: 324 NEKEWAKLFTDA 335

Source: Rosa odorata

Species: Rosa odorata

Genus: Rosa

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|123718210|emb|CAJ65620.1| putative orcinol O-methyltransferase [Rosa chinensis var. spontanea]

 Score =  322 bits (824), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 172/312 (55%), Positives = 204/312 (65%), Gaps = 59/312 (18%)

Query: 1   MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQC------------FFAQQKLV 48
           M+LK A QLGIPDIINKHG PMTL+EL SAL I+ +K+              FFA++KL 
Sbjct: 30  MSLKSAIQLGIPDIINKHGYPMTLSELTSALPIHPTKSHSVYRLMRILVHSGFFAKKKLS 89

Query: 49  SSGNNNDEEQGYVLTNASKLLLKDNPLS-------------------------------- 76
            +     +E+GY LTNAS+LLLKD+PLS                                
Sbjct: 90  KT-----DEEGYTLTNASQLLLKDHPLSLTPFLTAMLDPVLTKPWNYLSTWFQNDDPTPF 144

Query: 77  ---------EYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGT 127
                    +Y   +  + +FFN+AMASDARL TSV+I  CK VFEGL SLVDVGGGTGT
Sbjct: 145 DTAHGMTFWDYGNHQPSIAHFFNDAMASDARLVTSVIIDDCKGVFEGLESLVDVGGGTGT 204

Query: 128 AAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWN 187
            AKAIA AFP +ECT  DLPHVV  L+    NLKY GGDMF+A+ PA  VLLKWIL DWN
Sbjct: 205 VAKAIADAFPYIECTVLDLPHVVADLQGS-KNLKYTGGDMFEAVPPADTVLLKWILHDWN 263

Query: 188 DEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTER 247
           DEECVKILK+ +EAITR  KK KVII DM+ EN+K D +SIETQLFF+M MM L+TG ER
Sbjct: 264 DEECVKILKRSREAITRKDKKGKVIIIDMMMENQKGDEESIETQLFFDMLMMALVTGKER 323

Query: 248 DEKEWAKIFADS 259
           +EKEWAK+F D+
Sbjct: 324 NEKEWAKLFTDA 335

Source: Rosa chinensis var. spontanea

Species: Rosa chinensis

Genus: Rosa

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224146520|ref|XP_002326036.1| flavonoid o-methyltransferase related [Populus trichocarpa] gi|222862911|gb|EEF00418.1| flavonoid o-methyltransferase related [Populus trichocarpa]

 Score =  321 bits (823), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 176/309 (56%), Positives = 210/309 (67%), Gaps = 53/309 (17%)

Query: 1   MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQK-LVSSG-----NNN 54
           M+LKCA QLGIPD+I+ HGKPMTL+ELV+ L I+ SK    +   + LV SG     NN+
Sbjct: 31  MSLKCAIQLGIPDVIHNHGKPMTLSELVAVLPIHPSKAPGIYRLMRILVHSGFFATQNNS 90

Query: 55  DEEQG--YVLTNASKLLLKDNPLS------------------------------------ 76
            E +G  YVLTNAS+LL+KDNP S                                    
Sbjct: 91  GETEGEGYVLTNASQLLIKDNPFSVTPFLLAMLDPILTQPWHYVSVWFQNDAPSSFYTAH 150

Query: 77  -----EYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKA 131
                EYAG E++LN+FFNEAMASDARL +SV++ +CK VFEGLNSLVDVGGGTGT AKA
Sbjct: 151 QRTCWEYAGHETELNHFFNEAMASDARLVSSVLVNECKGVFEGLNSLVDVGGGTGTVAKA 210

Query: 132 IAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDEEC 191
           IAK F  L+CT FDLPHVV GLE    NLKY+ GDMF+AI  A A+LLKWIL DWNDEEC
Sbjct: 211 IAKEFQHLDCTVFDLPHVVAGLEGS-ENLKYLSGDMFEAIPQADAILLKWILHDWNDEEC 269

Query: 192 VKILKKCKEAI-TRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEK 250
           VKILK+CKEAI  R+G   K+II DM+ EN K+   S ETQLFF+M MM+L+TG ER+EK
Sbjct: 270 VKILKQCKEAIKGREGG--KLIIIDMVVENNKEVEGSTETQLFFDMLMMILVTGKERNEK 327

Query: 251 EWAKIFADS 259
           EWAK+F D+
Sbjct: 328 EWAKLFTDA 336

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|123718188|emb|CAJ65609.1| putative orcinol O-methyltransferase [Rosa bracteata]

 Score =  321 bits (823), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 171/312 (54%), Positives = 205/312 (65%), Gaps = 59/312 (18%)

Query: 1   MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQC------------FFAQQKLV 48
           M+LK A QLGIPDIINKHG PMTL+EL SAL I+ +K+              FFA++KL 
Sbjct: 30  MSLKSAIQLGIPDIINKHGYPMTLSELTSALPIHPTKSHSVYRLMRILVHSGFFAKKKLS 89

Query: 49  SSGNNNDEEQGYVLTNASKLLLKDNPLS-------------------------------- 76
           ++     +E+GY LT+AS+LLLKD+PLS                                
Sbjct: 90  TT-----DEEGYTLTDASQLLLKDHPLSITPFLTAMLDPVLTKPWNYLSTWFQNDDPTPF 144

Query: 77  ---------EYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGT 127
                    +Y   +  + +FFN+AMASDARL TSV+I  CK VFEGL SLVDVGGGTGT
Sbjct: 145 DTAHGMTFWDYGNHQPSIAHFFNDAMASDARLVTSVIIDDCKGVFEGLESLVDVGGGTGT 204

Query: 128 AAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWN 187
            AKAIA AFP +ECT  DLPHVV  L+    NLKY GGDMF+A+ PA AVLLKWIL DWN
Sbjct: 205 VAKAIADAFPHIECTVLDLPHVVADLQGS-KNLKYTGGDMFEAVPPADAVLLKWILHDWN 263

Query: 188 DEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTER 247
           DEECVKILK+ +EAIT   KK KVII DM+ EN+K D +SIETQLFF+M MM L+TG ER
Sbjct: 264 DEECVKILKRSREAITSKDKKGKVIIIDMMMENQKGDEESIETQLFFDMLMMALVTGKER 323

Query: 248 DEKEWAKIFADS 259
           +EKEWAK+F D+
Sbjct: 324 NEKEWAKLFTDA 335

Source: Rosa bracteata

Species: Rosa bracteata

Genus: Rosa

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|123718174|emb|CAJ65602.1| putative orcinol O-methyltransferase [Rosa banksiae]

 Score =  321 bits (822), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 171/312 (54%), Positives = 205/312 (65%), Gaps = 59/312 (18%)

Query: 1   MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQC------------FFAQQKLV 48
           M+LK A QLGIPDIINKHG PMTL+EL SAL I+ +K+              FFA++KL 
Sbjct: 30  MSLKSAIQLGIPDIINKHGYPMTLSELTSALPIHPTKSHSVYRLMRTLVHSGFFAKKKLS 89

Query: 49  SSGNNNDEEQGYVLTNASKLLLKDNPLS-------------------------------- 76
           ++     +E+GY LT+AS+LLLKD+PLS                                
Sbjct: 90  TT-----DEEGYTLTDASQLLLKDHPLSLTPFLTAMLDPVLTKPWNYLSTWFQNDDPAPF 144

Query: 77  ---------EYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGT 127
                    +Y   +  + +FFN+AMASDARL TSV+I  CK VFEGL SLVDVGGGTGT
Sbjct: 145 DTAHGMTFWDYGNHQPSIAHFFNDAMASDARLVTSVIIDDCKGVFEGLESLVDVGGGTGT 204

Query: 128 AAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWN 187
            AKAIA AFP +ECT  DLPHVV  L+    NLKY GGDMF+A+ PA AVLLKWIL DWN
Sbjct: 205 VAKAIADAFPHIECTVLDLPHVVADLQGS-KNLKYTGGDMFEAVPPADAVLLKWILHDWN 263

Query: 188 DEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTER 247
           DEECVKILK+ +EAIT   KK KVII DM+ EN+K D +SIETQLFF+M MM L+TG ER
Sbjct: 264 DEECVKILKRSREAITSKDKKGKVIIIDMMMENQKGDEESIETQLFFDMLMMALVTGKER 323

Query: 248 DEKEWAKIFADS 259
           +EKEWAK+F D+
Sbjct: 324 NEKEWAKLFTDA 335

Source: Rosa banksiae

Species: Rosa banksiae

Genus: Rosa

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	259
UNIPROTKB|Q6VMW0	366	OMT2 "8-hydroxyquercetin 8-O-m	0.702	0.497	0.483	1.4e-60
UNIPROTKB|B0EXJ8	355	16OMT "Tabersonine 16-O-methyl	0.691	0.504	0.483	1.4e-52
UNIPROTKB|Q8GSN1	348	Q8GSN1 "Myricetin O-methyltran	0.691	0.514	0.445	1.8e-52
UNIPROTKB|Q84KK4	365	HI4'OMT "Isoflavone 4'-O-methy	0.679	0.482	0.460	2.9e-50
UNIPROTKB|Q84KK6	367	HI4'OMT "Isoflavone 4'-O-methy	0.679	0.479	0.466	4.7e-50
UNIPROTKB|Q84KK5	357	D7OMT "Isoflavone 7-O-methyltr	0.694	0.504	0.415	7.6e-46
UNIPROTKB|A8QW53	374	OMT3 "5-pentadecatrienyl resor	0.733	0.508	0.411	6.3e-37
TAIR|locus:2132806	382	AT4G35160 [Arabidopsis thalian	0.664	0.450	0.377	4.3e-32
TAIR|locus:2132801	325	AT4G35150 [Arabidopsis thalian	0.976	0.778	0.346	6.2e-30
TAIR|locus:2153423	363	OMT1 "AT5G54160" [Arabidopsis	0.660	0.471	0.344	6.6e-28

UNIPROTKB|Q6VMW0 OMT2 "8-hydroxyquercetin 8-O-methyltransferase" [Mentha x piperita (taxid:34256)]

 Score = 469 (170.2 bits), Expect = 1.4e-60, Sum P(2) = 1.4e-60
 Identities = 89/184 (48%), Positives = 123/184 (66%)

Query:    77 EYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVXXXXXXXXXXXXXXF 136
             EYA  + +LN  FNEAMA DA    S++  +C+ +F+GL S+VDV              F
Sbjct:   163 EYAVADDRLNVLFNEAMACDAGFVNSILTTECREIFDGLESMVDVGGGTGATAKGIAAAF 222

Query:   137 PKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDEECVKILK 196
             P +ECT  DLP+VV GL+    NL +V GDMF  I  A A+ +K+IL DWNDEECVKILK
Sbjct:   223 PGMECTVLDLPNVVGGLKGS-ENLSFVSGDMFDFIPHADAIFMKFILHDWNDEECVKILK 281

Query:   197 KCKEAITRDGKK-RKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAKI 255
             KCKEAI+R     RK+I+ +++ E+ K+ +++ ET+LFF+M M+ ++TG ER EKEW K+
Sbjct:   282 KCKEAISRSNNSCRKIILVEIVMEDEKETHEATETKLFFDMQMLAIITGKERSEKEWGKL 341

Query:   256 FADS 259
             F D+
Sbjct:   342 FFDA 345

GO:0009812 "flavonoid metabolic process" evidence=IDA

GO:0030761 "8-hydroxyquercitin 8-O-methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IDA

UNIPROTKB|B0EXJ8 16OMT "Tabersonine 16-O-methyltransferase" [Catharanthus roseus (taxid:4058)]

 Score = 420 (152.9 bits), Expect = 1.4e-52, Sum P(2) = 1.4e-52
 Identities = 88/182 (48%), Positives = 117/182 (64%)

Query:    78 YAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVXXXXXXXXXXXXXXFP 137
             Y+ +  +   FFNEAMASD++L + ++I + K +FEGL SLVD+              FP
Sbjct:   155 YSSEHMEHAEFFNEAMASDSQLISKLLIGEYKFLFEGLASLVDIGGGTGTIAKAIAKNFP 214

Query:   138 KLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDEECVKILKK 197
             +L+CT FDLPHVV  LES   N+++V GDMF+ I  A A+ LKWIL DWNDE+CVKILK 
Sbjct:   215 QLKCTVFDLPHVVANLESK-ENVEFVAGDMFEKIPSANAIFLKWILHDWNDEDCVKILKS 273

Query:   198 CKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAKIFA 257
             CK+AI   G K  VII DM+  + KKD   ++TQ   +M M+V     ER EKEWA +F 
Sbjct:   274 CKKAIPAKGGK--VIIIDMVMYSDKKDDHLVKTQTSMDMAMLVNFAAKERCEKEWAFLFK 331

Query:   258 DS 259
             ++
Sbjct:   332 EA 333

GO:0005737 "cytoplasm" evidence=IDA

GO:0009821 "alkaloid biosynthetic process" evidence=IDA

GO:0030766 "11-O-demethyl-17-O-deacetylvindoline O-methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

UNIPROTKB|Q8GSN1 Q8GSN1 "Myricetin O-methyltransferase" [Catharanthus roseus (taxid:4058)]

 Score = 390 (142.3 bits), Expect = 1.8e-52, Sum P(2) = 1.8e-52
 Identities = 81/182 (44%), Positives = 117/182 (64%)

Query:    80 GDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVXXXXXXXXXXXXXXFPKL 139
             G E K    F+  MA+D+ L + ++I +   +FEGL+SLVDV              FP L
Sbjct:   147 GAEDKYGKNFDGVMAADSILVSKMLIPEFNYLFEGLDSLVDVGGGTGTIAKAIAKSFPDL 206

Query:   140 ECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDEECVKILKKCK 199
             +CT FDLPHVV  LES   NL++VGGDMF+ I  A A+LLKWIL DW DEECVK+LK C+
Sbjct:   207 KCTVFDLPHVVANLEST-ENLEFVGGDMFEKIPSANAILLKWILHDWKDEECVKVLKMCR 265

Query:   200 EAITRDGKKRKVI-IKDMIKENRK-KDYKSIETQLFFEMFMMVLLTGTERDEKEWAKIFA 257
             +AI    K  KVI I+ ++ +++K ++ ++++ Q+  ++ MMV  T  ER E+EWA +F 
Sbjct:   266 KAIPEKEKGGKVILIETVLMDSKKHENEEAVKAQISSDIDMMVFFTAKERTEEEWATLFR 325

Query:   258 DS 259
             ++
Sbjct:   326 EA 327

GO:0033799 "myricetin 3'-O-methyltransferase activity" evidence=IDA

UNIPROTKB|Q84KK4 HI4'OMT "Isoflavone 4'-O-methyltransferase" [Lotus japonicus (taxid:34305)]

 Score = 401 (146.2 bits), Expect = 2.9e-50, Sum P(2) = 2.9e-50
 Identities = 82/178 (46%), Positives = 113/178 (63%)

Query:    82 ESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVXXXXXXXXXXXXXXFPKLEC 141
             ES   + F EAMA+D+ +   + +++CK+VFEGL SLVDV              FP ++C
Sbjct:   169 ESDTLSMFQEAMAADSHMF-KLALKECKHVFEGLGSLVDVAGGRGGVTKLIREAFPHVKC 227

Query:   142 TCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDEECVKILKKCKEA 201
             T FD P VV  L  D  NL +VGGDMFK++ PA AVLLKW+L DWNDE  +KILK CKEA
Sbjct:   228 TVFDQPQVVANLTGD-ENLNFVGGDMFKSVPPADAVLLKWVLHDWNDELSLKILKNCKEA 286

Query:   202 ITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAKIFADS 259
             I+  GK+ KVII D+  +    D +  E +L +++ M+ +  G ER++KEW K+  D+
Sbjct:   287 ISGRGKEGKVIIIDISIDETSDDRELTELKLDYDLVMLTMFNGKEREKKEWEKLIYDA 344

GO:0009701 "isoflavonoid phytoalexin biosynthetic process" evidence=IDA

GO:0030746 "isoflavone 4'-O-methyltransferase activity" evidence=IDA

UNIPROTKB|Q84KK6 HI4'OMT "Isoflavone 4'-O-methyltransferase" [Glycyrrhiza echinata (taxid:46348)]

 Score = 401 (146.2 bits), Expect = 4.7e-50, Sum P(2) = 4.7e-50
 Identities = 83/178 (46%), Positives = 115/178 (64%)

Query:    82 ESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVXXXXXXXXXXXXXXFPKLEC 141
             ES   + F EAMA+D+++   + +++C++VFEGL SLVDV              FP L+C
Sbjct:   171 ESGTLSMFQEAMAADSQMF-KLALKECRHVFEGLESLVDVGGGTGGVTKLIHEEFPHLKC 229

Query:   142 TCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDEECVKILKKCKEA 201
             T FD P VV  L  +  NLK+VGGDMFK+I PA AVLLKW+L DWNDE  +KILK  KEA
Sbjct:   230 TVFDQPQVVGNLSGN-ENLKFVGGDMFKSIPPADAVLLKWVLHDWNDELSLKILKNSKEA 288

Query:   202 ITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAKIFADS 259
             I+  GK+ KVII D+  +    D +  E QL +++ M+ +  G ER++KEW K+ +D+
Sbjct:   289 ISGKGKEGKVIIIDISIDEASGDRELTELQLDYDLVMLTMFNGKEREKKEWEKLISDA 346

GO:0009701 "isoflavonoid phytoalexin biosynthetic process" evidence=IDA

GO:0030746 "isoflavone 4'-O-methyltransferase activity" evidence=IDA

UNIPROTKB|Q84KK5 D7OMT "Isoflavone 7-O-methyltransferase" [Glycyrrhiza echinata (taxid:46348)]

 Score = 380 (138.8 bits), Expect = 7.6e-46, Sum P(2) = 7.6e-46
 Identities = 76/183 (41%), Positives = 114/183 (62%)

Query:    77 EYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVXXXXXXXXXXXXXXF 136
             E+  +  + N  FN+AMASD+++  ++ ++ C + FEG+ S+VDV              F
Sbjct:   157 EFLNENPEYNKSFNDAMASDSQMI-NLALRDCNSGFEGVESIVDVGGGIGTTAKIICDTF 215

Query:   137 PKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDEECVKILK 196
             P L+C  FD P VV  L S   NL YVGGDMF+++  A AVLLKWIL +W D +C +IL+
Sbjct:   216 PNLKCIVFDRPKVVENL-SGTNNLSYVGGDMFQSVPKADAVLLKWILHNWTDNDCRRILE 274

Query:   197 KCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAKIF 256
             KCKEA++ DG+K KVII +M+    + +++   T+L  ++  M  L G ER E+EW K+F
Sbjct:   275 KCKEAVSSDGEKGKVIIIEMVINENQDEHEITGTKLLMDV-NMACLNGKERSEEEWKKLF 333

Query:   257 ADS 259
              ++
Sbjct:   334 IEA 336

GO:0009717 "isoflavonoid biosynthetic process" evidence=IDA

GO:0033800 "isoflavone 7-O-methyltransferase activity" evidence=IDA

UNIPROTKB|A8QW53 OMT3 "5-pentadecatrienyl resorcinol O-methyltransferase" [Sorghum bicolor (taxid:4558)]

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 79/192 (41%), Positives = 117/192 (60%)

Query:    69 LLKDNPLSEYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVXXXXXXX 128
             L+    L E    +  +N  FN AMA+D+     +++++   VF G++SLVDV       
Sbjct:   163 LMYGTTLWEVCRRDDAINALFNNAMAADSNFLMQILLKEFSEVFLGIDSLVDVAGGVGGA 222

Query:   129 XXXXXXXFPKLECTCFDLPHVV-NGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWN 187
                    FP L+CT  DLPHVV     S + N+++VGGDMF++I PA  VLLKWIL DW+
Sbjct:   223 TMAIAAAFPCLKCTVLDLPHVVAKAPSSSIGNVQFVGGDMFESIPPANVVLLKWILHDWS 282

Query:   188 DEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTER 247
             ++EC+KILK CK+AI       K+II D++  +   D K +ETQ+ +++ +M +  G ER
Sbjct:   283 NDECIKILKNCKQAIPSRDAGGKIIIIDVVVGSDSSDTKLLETQVIYDLHLMKI-GGVER 341

Query:   248 DEKEWAKIFADS 259
             DE+EW KIF ++
Sbjct:   342 DEQEWKKIFLEA 353

GO:0008171 "O-methyltransferase activity" evidence=IDA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IDA

TAIR|locus:2132806 AT4G35160 [Arabidopsis thaliana (taxid:3702)]

 Score = 290 (107.1 bits), Expect = 4.3e-32, Sum P(2) = 4.3e-32
 Identities = 69/183 (37%), Positives = 100/183 (54%)

Query:    78 YAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVXXXXXXXXXXXXXXFP 137
             +A D   L++  NEAMA DAR     +   C  +F+G+ ++VDV              FP
Sbjct:   174 FAQDNPFLSDMINEAMACDARRVVPRVAGACHGLFDGVTTMVDVGGGTGETMGMLVKEFP 233

Query:   138 KLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDEECVKILKK 197
              ++   FDLPHV+   E  L  ++ V GDMF +I    A+ +KW+L DW D++C+KILK 
Sbjct:   234 WIKGFNFDLPHVIEVAEV-LDGVENVEGDMFDSIPACDAIFIKWVLHDWGDKDCIKILKN 292

Query:   198 CKEAITRD-GKKRKVIIKDMIKENRK------KDYKSIETQLFFEMFMMV-LLTGTERDE 249
             CKEA+  + GK   +I++ +I EN+K      +D K    +L  +M MM    TG ER  
Sbjct:   293 CKEAVPPNIGKV--LIVESVIGENKKTMIVDERDEKLEHVRLMLDMVMMAHTSTGKERTL 350

Query:   250 KEW 252
             KEW
Sbjct:   351 KEW 353

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2132801 AT4G35150 [Arabidopsis thaliana (taxid:3702)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 95/274 (34%), Positives = 138/274 (50%)

Query:     4 KCAFQLGIPDIINKH--GKPMTLNELVSALTIN---LSKTQCFFAQQKLVSSGNNNDE-E 57
             KCA  L IP+ I  H   +P+TL+EL SA++ +   L +   F   Q L       D   
Sbjct:    33 KCAIDLKIPEAIENHPSSQPVTLSELSSAVSASPSHLRRIMRFLVHQGLFKEVPTKDGLA 92

Query:    58 QGYVLTNASKLL----LKDNPLSEYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFE 113
              GY  T  S+ +    L    L  +A D    +   NEAMA DAR     +   C+ +F+
Sbjct:    93 TGYTNTPLSRRMMITKLHGKDLWAFAQDNLCHSQLINEAMACDARRVVPRVAGACQGLFD 152

Query:   114 GLNSLVDVXXXXXXXXXXXXXXFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISP 173
             G+ ++VDV              FP ++   FDLPHV+  +   L  ++ V GDMF +I  
Sbjct:   153 GVATVVDVGGGTGETMGILVKEFPWIKGFNFDLPHVIE-VAQVLDGVENVEGDMFDSIPA 211

Query:   174 AYAVLLKWILLDWNDEECVKILKKCKEAITRD-GKKRKV--IIKD----MIKENRKKDYK 226
             + AV++KW+L DW D++C+KILK CKEA+  + GK   V  +I +    MI E R    +
Sbjct:   212 SDAVIIKWVLHDWGDKDCIKILKNCKEAVLPNIGKVLIVECVIGEKKNTMIAEERDDKLE 271

Query:   227 SIETQLFFEMFMMV-LLTGTERDEKEWAKIFADS 259
              +  QL  +M MMV   TG ER  KEW  +  ++
Sbjct:   272 HVRLQL--DMVMMVHTSTGKERTLKEWDFVLTEA 303

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2153423 OMT1 "AT5G54160" [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 6.6e-28, Sum P(2) = 6.6e-28
 Identities = 61/177 (34%), Positives = 90/177 (50%)

Query:    77 EYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVXXXXXXXXXXXXXXF 136
             EY G + + N  FN  M++ + +    +++  K  FEGL SLVDV              +
Sbjct:   162 EYHGTDPRFNKVFNNGMSNHSTITMKKILETYKG-FEGLTSLVDVGGGIGATLKMIVSKY 220

Query:   137 PKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDEECVKILK 196
             P L+   FDLPHV+    S    +++VGGDMF ++    A+ +KWI  DW+DE CVK LK
Sbjct:   221 PNLKGINFDLPHVIEDAPSH-PGIEHVGGDMFVSVPKGDAIFMKWICHDWSDEHCVKFLK 279

Query:   197 KCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTG-TERDEKEW 252
              C E++  DGK   VI+ + I         S +  +  +  M+    G  ER EKE+
Sbjct:   280 NCYESLPEDGK---VILAECILPETPDSSLSTKQVVHVDCIMLAHNPGGKERTEKEF 333

GO:0030744 "luteolin O-methyltransferase activity" evidence=IDA

GO:0030755 "quercetin 3-O-methyltransferase activity" evidence=IDA

GO:0033799 "myricetin 3'-O-methyltransferase activity" evidence=IDA

GO:0047763 "caffeate O-methyltransferase activity" evidence=ISS;IMP

GO:0051555 "flavonol biosynthetic process" evidence=IDA

GO:0009809 "lignin biosynthetic process" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0005829 "cytosol" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.766

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00018662001 SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (357 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	259
pfam00891	239	pfam00891, Methyltransf_2, O-methyltransferase	1e-66
pfam08100	50	pfam08100, Dimerisation, Dimerisation domain	6e-13
TIGR02716	306	TIGR02716, C20_methyl_CrtF, C-20 methyltransferase	1e-11
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	3e-04

>gnl|CDD|216177 pfam00891, Methyltransf_2, O-methyltransferase

 Score =  206 bits (527), Expect = 1e-66
 Identities = 81/184 (44%), Positives = 116/184 (63%), Gaps = 8/184 (4%)

Query: 74  PLSEYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIA 133
           P  EY G + + N  FN AMA+ +RL    +++     F GL+SLVDVGGGTG  A AI 
Sbjct: 62  PFFEYLGADPEFNRVFNRAMAAHSRLVMKKILE-TAFDFSGLSSLVDVGGGTGALAAAIV 120

Query: 134 KAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDEECVK 193
           +A+P ++   FDLPHV+    S    +++VGGD F+++  A A+LLKW+L DW+DE+CVK
Sbjct: 121 RAYPHIKGIVFDLPHVIADAPS-ADRVEFVGGDFFESVPEADAILLKWVLHDWSDEDCVK 179

Query: 194 ILKKCKEAITRDGKKRKVIIKDMI-KENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEW 252
           ILK+C EA+   G   KVI+ +M+  E+   D ++    L  ++ M+VL  G ER EKEW
Sbjct: 180 ILKRCYEALPPGG---KVIVVEMVLPEDPDDDLET--EVLLLDLNMLVLNGGKERTEKEW 234

Query: 253 AKIF 256
            K+ 
Sbjct: 235 RKLL 238

This family includes a range of O-methyltransferases. These enzymes utilise S-adenosyl methionine. Length = 239

>gnl|CDD|219719 pfam08100, Dimerisation, Dimerisation domain

 Score = 61.4 bits (150), Expect = 6e-13
 Identities = 23/42 (54%), Positives = 28/42 (66%), Gaps = 1/42 (2%)

Query: 1  MTLKCAFQLGIPDIINKHGKPMTLNELVSAL-TINLSKTQCF 41
          M LKCA +LGIPDII KHGKP++ +EL S L T+N       
Sbjct: 1  MVLKCAIELGIPDIIAKHGKPLSPSELASKLPTVNPEAPVML 42

This domain is found at the N-terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins. Length = 50

>gnl|CDD|131763 TIGR02716, C20_methyl_CrtF, C-20 methyltransferase BchU

 Score = 63.1 bits (153), Expect = 1e-11
 Identities = 37/137 (27%), Positives = 73/137 (53%), Gaps = 12/137 (8%)

Query: 88  FFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLP 147
           +F E   S+A+ A  +++++ K   +G+  ++DVGGG G  + A+ K FP+L+ T  +LP
Sbjct: 125 YFEEIHRSNAKFAIQLLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLP 182

Query: 148 HVVNGLESDLV------NLKYVGGDMFK-AISPAYAVLLKWILLDWNDEECVKILKKCKE 200
             ++ +  +         ++ +  D++K +   A AVL   IL   N++    + KK  +
Sbjct: 183 GAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFD 242

Query: 201 AITRDGKKRKVIIKDMI 217
           A+   G   +++I DM+
Sbjct: 243 AMRSGG---RLLILDMV 256

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 306

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 38.8 bits (91), Expect = 3e-04
 Identities = 20/99 (20%), Positives = 41/99 (41%), Gaps = 12/99 (12%)

Query: 117 SLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVV-----NGLESDLVNLKYVGGDMFKA 170
            ++D+G GTG+ A  +A+ FP    T  DL P ++     N   +    + +V GD   A
Sbjct: 4   RVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPRITFVQGDAPDA 63

Query: 171 IS--PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGK 207
           +     +      + +     + +++L      +   G+
Sbjct: 64  LDLLEGFDA----VFIGGGGGDLLELLDALASLLKPGGR 98

Protein in this family function as methyltransferases. Length = 104

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	259
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	100.0
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	100.0
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	100.0
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.75
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.72
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.69
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.69
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.69
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.65
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.65
PRK06922	677	hypothetical protein; Provisional	99.64
PLN02244	340	tocopherol O-methyltransferase	99.62
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.6
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.6
PRK11207	197	tellurite resistance protein TehB; Provisional	99.6
PLN02336	475	phosphoethanolamine N-methyltransferase	99.59
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.59
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.58
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.58
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.57
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.57
PLN02490	340	MPBQ/MSBQ methyltransferase	99.57
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.55
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.53
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.53
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.53
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.53
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.5
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.5
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.5
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.5
PRK08317	241	hypothetical protein; Provisional	99.5
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.49
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.49
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.48
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.48
PLN02336	475	phosphoethanolamine N-methyltransferase	99.47
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.47
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.46
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.46
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.45
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.45
PRK12335	287	tellurite resistance protein TehB; Provisional	99.45
PLN03075	296	nicotianamine synthase; Provisional	99.44
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.43
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.41
PRK06202	232	hypothetical protein; Provisional	99.41
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.4
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.4
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.39
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.39
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.38
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.36
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.36
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.35
PRK05785	226	hypothetical protein; Provisional	99.33
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.32
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.31
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.31
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	99.29
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.29
TIGR03438	301	probable methyltransferase. This model represents	99.27
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.27
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.26
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.25
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.23
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.23
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.2
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.19
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.19
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.18
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.17
PRK04266	226	fibrillarin; Provisional	99.17
KOG2361	264	consensus Predicted methyltransferase [General fun	99.17
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.15
PRK13256	226	thiopurine S-methyltransferase; Reviewed	99.15
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.15
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.15
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.14
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.14
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	99.12
PRK07402	196	precorrin-6B methylase; Provisional	99.12
PRK04457	262	spermidine synthase; Provisional	99.12
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.12
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.11
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.09
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.08
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.07
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.07
COG4123	248	Predicted O-methyltransferase [General function pr	99.07
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.06
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.05
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.04
KOG4300	252	consensus Predicted methyltransferase [General fun	99.04
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.03
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	99.03
PRK14967	223	putative methyltransferase; Provisional	99.0
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	98.98
PRK14968	188	putative methyltransferase; Provisional	98.98
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	98.97
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	98.96
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	98.96
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.95
PHA03411	279	putative methyltransferase; Provisional	98.95
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	98.94
KOG2899	288	consensus Predicted methyltransferase [General fun	98.94
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	98.93
PRK00811	283	spermidine synthase; Provisional	98.91
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	98.9
COG2890	280	HemK Methylase of polypeptide chain release factor	98.89
TIGR00438	188	rrmJ cell division protein FtsJ.	98.87
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	98.87
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	98.83
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	98.82
PTZ00146	293	fibrillarin; Provisional	98.81
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	98.81
PLN02366	308	spermidine synthase	98.8
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	98.78
PHA03412	241	putative methyltransferase; Provisional	98.77
PRK01581	374	speE spermidine synthase; Validated	98.77
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.77
KOG1271	227	consensus Methyltransferases [General function pre	98.76
PLN02232	160	ubiquinone biosynthesis methyltransferase	98.76
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	98.76
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	98.74
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	98.73
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	98.72
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	98.71
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	98.7
PRK10901	427	16S rRNA methyltransferase B; Provisional	98.69
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	98.69
PRK14902	444	16S rRNA methyltransferase B; Provisional	98.67
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	98.67
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	98.64
PRK03612	521	spermidine synthase; Provisional	98.64
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.64
PRK14904	445	16S rRNA methyltransferase B; Provisional	98.63
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	98.63
PLN02672	1082	methionine S-methyltransferase	98.59
PRK14901	434	16S rRNA methyltransferase B; Provisional	98.57
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.56
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	98.56
PRK14903	431	16S rRNA methyltransferase B; Provisional	98.55
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.54
KOG3010	261	consensus Methyltransferase [General function pred	98.54
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.53
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.53
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.5
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	98.49
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	98.45
PF08100	51	Dimerisation: Dimerisation domain; InterPro: IPR01	98.44
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	98.41
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	98.39
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	98.38
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.38
PRK04148	134	hypothetical protein; Provisional	98.36
COG4976	287	Predicted methyltransferase (contains TPR repeat)	98.36
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	98.35
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.33
PLN02476	278	O-methyltransferase	98.32
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	98.32
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	98.32
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	98.3
PLN02823	336	spermine synthase	98.28
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	98.25
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.23
COG4122	219	Predicted O-methyltransferase [General function pr	98.23
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.21
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.21
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.21
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	98.19
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	98.19
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	98.17
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	98.17
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.15
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	98.12
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	98.12
KOG2904	328	consensus Predicted methyltransferase [General fun	98.1
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.09
PRK00536	262	speE spermidine synthase; Provisional	98.09
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	98.08
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.07
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	98.07
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.02
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	98.0
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	97.96
KOG1331	293	consensus Predicted methyltransferase [General fun	97.96
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	97.94
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	97.9
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	97.9
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	97.89
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	97.88
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	97.81
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	97.74
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	97.72
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	97.71
PF13679	141	Methyltransf_32: Methyltransferase domain	97.69
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	97.67
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	97.65
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	97.62
KOG3115	249	consensus Methyltransferase-like protein [General	97.61
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	97.61
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	97.6
COG3897	218	Predicted methyltransferase [General function pred	97.57
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	97.54
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	97.51
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	97.48
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	97.45
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	97.36
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	97.36
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	97.34
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	97.33
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	97.33
COG4076	252	Predicted RNA methylase [General function predicti	97.28
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	97.28
COG2521	287	Predicted archaeal methyltransferase [General func	97.27
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.26
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	97.21
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	97.2
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	97.17
KOG2940	325	consensus Predicted methyltransferase [General fun	97.1
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.09
COG4262	508	Predicted spermidine synthase with an N-terminal m	97.07
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	97.03
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	97.0
PF11312	315	DUF3115: Protein of unknown function (DUF3115); In	96.99
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	96.87
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	96.75
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	96.75
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	96.72
TIGR00027	260	mthyl_TIGR00027 methyltransferase, putative, TIGR0	96.71
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	96.7
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	96.64
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	96.62
COG2384	226	Predicted SAM-dependent methyltransferase [General	96.61
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	96.51
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	96.4
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	96.36
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	96.32
COG3315	297	O-Methyltransferase involved in polyketide biosynt	96.32
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	96.27
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	96.25
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	96.22
COG4798	238	Predicted methyltransferase [General function pred	96.18
COG4301	321	Uncharacterized conserved protein [Function unknow	96.08
COG1041	347	Predicted DNA modification methylase [DNA replicat	95.93
KOG4058	199	consensus Uncharacterized conserved protein [Funct	95.91
PF04072	183	LCM: Leucine carboxyl methyltransferase; InterPro:	95.84
COG0742	187	N6-adenine-specific methylase [DNA replication, re	95.83
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	95.83
smart00346	91	HTH_ICLR helix_turn_helix isocitrate lyase regulat	95.82
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	95.73
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	95.66
KOG2730	263	consensus Methylase [General function prediction o	95.62
KOG3924	419	consensus Putative protein methyltransferase invol	95.57
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	95.55
COG2520	341	Predicted methyltransferase [General function pred	95.18
KOG3201	201	consensus Uncharacterized conserved protein [Funct	95.1
PF09339	52	HTH_IclR: IclR helix-turn-helix domain; InterPro:	95.1
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	95.08
COG1414	246	IclR Transcriptional regulator [Transcription]	95.03
TIGR02431	248	pcaR_pcaU beta-ketoadipate pathway transcriptional	94.88
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	94.84
PRK11569	274	transcriptional repressor IclR; Provisional	94.81
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	94.77
smart00550	68	Zalpha Z-DNA-binding domain in adenosine deaminase	94.69
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	94.66
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	94.65
PRK10163	271	DNA-binding transcriptional repressor AllR; Provis	94.61
COG2265	432	TrmA SAM-dependent methyltransferases related to t	94.35
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	94.28
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	94.23
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	94.08
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	94.01
PRK09834	263	DNA-binding transcriptional activator MhpR; Provis	93.95
PF04967	53	HTH_10: HTH DNA binding domain; InterPro: IPR00705	93.78
PRK15090	257	DNA-binding transcriptional regulator KdgR; Provis	93.78
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	93.72
KOG2352	482	consensus Predicted spermine/spermidine synthase [	93.67
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	93.56
PRK10742	250	putative methyltransferase; Provisional	93.51
KOG2918	335	consensus Carboxymethyl transferase [Posttranslati	93.02
PLN02668	386	indole-3-acetate carboxyl methyltransferase	92.94
PF02082	83	Rrf2: Transcriptional regulator; InterPro: IPR0009	92.85
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	92.7
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	92.68
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	92.38
PRK10857	164	DNA-binding transcriptional regulator IscR; Provis	92.18
PF12692	160	Methyltransf_17: S-adenosyl-L-methionine methyltra	92.09
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	92.09
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	91.99
KOG1501	636	consensus Arginine N-methyltransferase [General fu	91.89
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	91.18
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	90.8
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	90.79
cd00092	67	HTH_CRP helix_turn_helix, cAMP Regulatory protein	90.4
smart00419	48	HTH_CRP helix_turn_helix, cAMP Regulatory protein.	90.4
PF14947	77	HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_	90.32
COG1959	150	Predicted transcriptional regulator [Transcription	90.22
PF01022	47	HTH_5: Bacterial regulatory protein, arsR family;	90.2
COG1565	370	Uncharacterized conserved protein [Function unknow	90.1
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	89.97
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	89.9
PF13412	48	HTH_24: Winged helix-turn-helix DNA-binding; PDB:	89.69
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	89.11
PF13463	68	HTH_27: Winged helix DNA-binding domain; PDB: 3GFL	88.94
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	88.42
smart00347	101	HTH_MARR helix_turn_helix multiple antibiotic resi	88.09
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	88.05
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	87.84
PF12840	61	HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_	87.72
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	87.62
PF13404	42	HTH_AsnC-type: AsnC-type helix-turn-helix domain;	87.39
TIGR02010	135	IscR iron-sulfur cluster assembly transcription fa	87.09
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	86.68
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	85.85
PF02796	45	HTH_7: Helix-turn-helix domain of resolvase; Inter	85.48
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	85.18
TIGR00738	132	rrf2_super rrf2 family protein (putative transcrip	84.77
TIGR02337	118	HpaR homoprotocatechuate degradation operon regula	84.66
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	84.64
PRK10141	117	DNA-binding transcriptional repressor ArsR; Provis	84.43
COG4742	260	Predicted transcriptional regulator [Transcription	84.36
TIGR00122	69	birA_repr_reg BirA biotin operon repressor domain.	84.19
PF08279	55	HTH_11: HTH domain; InterPro: IPR013196 Winged hel	84.1
PF12324	77	HTH_15: Helix-turn-helix domain of alkylmercury ly	84.08
KOG2539	491	consensus Mitochondrial/chloroplast ribosome small	83.96
PF01978	68	TrmB: Sugar-specific transcriptional regulator Trm	83.74
COG5379	414	BtaA S-adenosylmethionine:diacylglycerol 3-amino-3	83.53
PRK11920	153	rirA iron-responsive transcriptional regulator; Re	83.26
TIGR01321	94	TrpR trp operon repressor, proteobacterial. This m	83.04
PF04703	62	FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.	83.0
TIGR02702	203	SufR_cyano iron-sulfur cluster biosynthesis transc	82.55
PRK03902	142	manganese transport transcriptional regulator; Pro	82.31
TIGR01884	203	cas_HTH CRISPR locus-related DNA-binding protein.	82.22
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	82.11
smart00418	66	HTH_ARSR helix_turn_helix, Arsenical Resistance Op	81.86
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	81.36
PRK01381	99	Trp operon repressor; Provisional	81.08
PRK11014	141	transcriptional repressor NsrR; Provisional	80.47
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	80.4

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=100.00  E-value=1.3e-40  Score=280.91  Aligned_cols=196  Identities=37%  Similarity=0.686  Sum_probs=171.1

Q ss_pred             CCceeecCHhhhhhhcCCC-CC----------------------------------------chhhcCchHHHHHHHHHH
Q 041250           56 EEQGYVLTNASKLLLKDNP-LS----------------------------------------EYAGDESKLNNFFNEAMA   94 (259)
Q Consensus        56 ~~~~y~~t~~~~~l~~~~~-~~----------------------------------------~~l~~~~~~~~~f~~~m~   94 (259)
                      +++.|+||+.|+.|+.+++ .+                                        +|+.++|+..+.|..+|.
T Consensus         2 ~~~~y~~t~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~v~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~   81 (241)
T PF00891_consen    2 EGDRYSLTPLSELLLSDHSSPSMRGFVLFMISPELYPAWFRLTEAVRTGKPPFEKAFGTPFFEYLEEDPELAKRFNAAMA   81 (241)
T ss_dssp             STEEEEE-HHHHGGSTTTTTTHHHHHHHHHTCHHHHHGGGGHHHHHHHSS-HHHHHHSS-HHHHHHCSHHHHHHHHHHHH
T ss_pred             CCCEEeChHHHHHHhCCCCcCcHHHHHHHhcCHHHHHHHHHHHhhhccCCCHHHHhcCCcHHHhhhhChHHHHHHHHHHH
Confidence            5789999999997776654 11                                        456678899999999999


Q ss_pred             hcchhhh-HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhcccCCCCeEEEeCCCCCCCCC
Q 041250           95 SDARLAT-SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISP  173 (259)
Q Consensus        95 ~~~~~~~-~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~~~~~  173 (259)
                      ..+.... +.+...++  +++..+|||||||+|.++.+++++||+++++++|+|++++.+++ .+||++++||||+++|.
T Consensus        82 ~~~~~~~~~~~~~~~d--~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~-~~rv~~~~gd~f~~~P~  158 (241)
T PF00891_consen   82 EYSRLNAFDILLEAFD--FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKE-ADRVEFVPGDFFDPLPV  158 (241)
T ss_dssp             HHHHHHHHHHHHHHST--TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHH-TTTEEEEES-TTTCCSS
T ss_pred             hhhhcchhhhhhcccc--ccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhcccc-ccccccccccHHhhhcc
Confidence            9888777 78888889  88889999999999999999999999999999999999999996 99999999999998888


Q ss_pred             ccEEeehhhhccCChHHHHHHHHHHHHhcccCCCC--cEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccCHHH
Q 041250          174 AYAVLLKWILLDWNDEECVKILKKCKEAITRDGKK--RKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKE  251 (259)
Q Consensus       174 ~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~g--g~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~e  251 (259)
                      +|+|+++++||+|+|+++++||++++++|+|   |  |+|+|+|+++++++..+.......++|++||++++|++||.+|
T Consensus       159 ~D~~~l~~vLh~~~d~~~~~iL~~~~~al~p---g~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~G~~rt~~e  235 (241)
T PF00891_consen  159 ADVYLLRHVLHDWSDEDCVKILRNAAAALKP---GKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLTGGKERTEEE  235 (241)
T ss_dssp             ESEEEEESSGGGS-HHHHHHHHHHHHHHSEE---CTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHHSSS-EEHHH
T ss_pred             ccceeeehhhhhcchHHHHHHHHHHHHHhCC---CCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhcCCCCcCHHH
Confidence            9999999999999999999999999999999   8  9999999999999887643223368999999999999999999


Q ss_pred             HHHHHh
Q 041250          252 WAKIFA  257 (259)
Q Consensus       252 ~~~ll~  257 (259)
                      |++|++
T Consensus       236 ~~~ll~  241 (241)
T PF00891_consen  236 WEALLK  241 (241)
T ss_dssp             HHHHHH
T ss_pred             HHHHhC
Confidence            999985

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=100.00  E-value=1.3e-37  Score=271.34  Aligned_cols=245  Identities=20%  Similarity=0.320  Sum_probs=190.3

Q ss_pred             CHHHHHHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhhhhhhc-CCCCC---
Q 041250            1 MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASKLLLK-DNPLS---   76 (259)
Q Consensus         1 ~aL~~a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~~~l~~-~~~~~---   76 (259)
                      ++|++|+++||||+|.+  +|.|++|||+++|++++.+.+||+++..++++  +.++++|+||+.++.+.. +++.+   
T Consensus         5 ~~l~aa~~Lglfd~L~~--gp~t~~eLA~~~~~~~~~~~~lL~~L~~lgll--~~~~~~y~~t~~~~~~l~~~~~~~~~~   80 (306)
T TIGR02716         5 SCMKAAIELDLFSHMAE--GPKDLATLAADTGSVPPRLEMLLETLRQMRVI--NLEDGKWSLTEFADYMFSPTPKEPNLH   80 (306)
T ss_pred             HHHHHHHHcCcHHHHhc--CCCCHHHHHHHcCCChHHHHHHHHHHHhCCCe--EecCCcEecchhHHhhccCCccchhhh
Confidence            47999999999999987  89999999999999999999999999999886  556789999999984444 33210   


Q ss_pred             --------------------chhhc---------Cch---HHHHHHHHHH-hcchhhhHHHHHhcccccCCCCeEEEecC
Q 041250           77 --------------------EYAGD---------ESK---LNNFFNEAMA-SDARLATSVMIQKCKNVFEGLNSLVDVGG  123 (259)
Q Consensus        77 --------------------~~l~~---------~~~---~~~~f~~~m~-~~~~~~~~~~~~~~~~~~~~~~~vlDvGg  123 (259)
                                          +.++.         .|+   ....|...|. .......+.+++.++  +++..+||||||
T Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~vlDiG~  158 (306)
T TIGR02716        81 QTPVAKAMAFLADDFYMGLSQAVRGQKNFKGQVPYPPVTREDNLYFEEIHRSNAKFAIQLLLEEAK--LDGVKKMIDVGG  158 (306)
T ss_pred             cCchHHHHHHHHHHHHHhHHHHhcCCcccccccCCCCCCHHHHHhHHHHHHhcchhHHHHHHHHcC--CCCCCEEEEeCC
Confidence                                11111         111   1123444443 333444566777777  778889999999


Q ss_pred             CchHHHHHHHHHCCCCeEEEeechHHHhhccc------CCCCeEEEeCCCCC-CCCCccEEeehhhhccCChHHHHHHHH
Q 041250          124 GTGTAAKAIAKAFPKLECTCFDLPHVVNGLES------DLVNLKYVGGDMFK-AISPAYAVLLKWILLDWNDEECVKILK  196 (259)
Q Consensus       124 G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~d~~~-~~~~~D~~~~~~vlh~~~d~~~~~il~  196 (259)
                      |+|.+++.+++++|+++++++|+|.+++.+++      ..+||+++.+|+++ ++|++|+|++++++|+|+++++.++|+
T Consensus       159 G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D~v~~~~~lh~~~~~~~~~il~  238 (306)
T TIGR02716       159 GIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCK  238 (306)
T ss_pred             chhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCCCCEEEeEhhhhcCChHHHHHHHH
Confidence            99999999999999999999999999988765      45799999999997 677799999999999999999999999


Q ss_pred             HHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhh----hhhhccCccccCHHHHHHHHhcC
Q 041250          197 KCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEM----FMMVLLTGTERDEKEWAKIFADS  259 (259)
Q Consensus       197 ~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~----~m~~~~~g~~rt~~e~~~ll~~a  259 (259)
                      +++++|+|   ||+++|+|.+.+++... .+   ..+.+.    .|+.. -...++.+||++|+++|
T Consensus       239 ~~~~~L~p---gG~l~i~d~~~~~~~~~-~~---~~~~~~~~~~~~~~~-~~~~~~~~e~~~ll~~a  297 (306)
T TIGR02716       239 KAFDAMRS---GGRLLILDMVIDDPENP-NF---DYLSHYILGAGMPFS-VLGFKEQARYKEILESL  297 (306)
T ss_pred             HHHHhcCC---CCEEEEEEeccCCCCCc-hh---hHHHHHHHHcccccc-cccCCCHHHHHHHHHHc
Confidence            99999999   99999999988775432 11   122222    12211 11344579999999876

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=100.00  E-value=3.7e-35  Score=250.94  Aligned_cols=252  Identities=29%  Similarity=0.463  Sum_probs=204.0

Q ss_pred             CHHHHHHHcCcchhhhcCCCCCCHHHHHHHcC-----CCccccccceeccccccCCCCC-CCCceeecCHhhhhhhcCCC
Q 041250            1 MTLKCAFQLGIPDIINKHGKPMTLNELVSALT-----INLSKTQCFFAQQKLVSSGNNN-DEEQGYVLTNASKLLLKDNP   74 (259)
Q Consensus         1 ~aL~~a~~l~lf~~L~~~~~~~t~~elA~~~~-----~~~~~l~~ll~~~~~~~~~~~~-~~~~~y~~t~~~~~l~~~~~   74 (259)
                      |+|.+|+||||||+|.+. ++  ..|+|..+-     .+|..+.|+|+.+...+++... .....|.++|.++++.++..
T Consensus        21 ~~lk~A~eL~v~d~l~~~-~~--p~~ia~~l~~~~~~~~p~ll~r~lr~L~s~~i~k~~~~~~~~Y~~~~~~~~~l~~~~   97 (342)
T KOG3178|consen   21 MVLKAACELGVFDILANA-GS--PSEIASLLPTPKNPEAPVLLDRILRLLVSYSILKCRLVGGEVYSATPVCKYFLKDSG   97 (342)
T ss_pred             HHHHHHHHcChHHHHHhC-CC--HHHHHHhccCCCCCCChhHHHHHHHHHHHhhhceeeeecceeeeccchhhhheecCC
Confidence            689999999999999974 22  667776665     4667788999988887654321 11228999999996664332


Q ss_pred             -CC----------------------------------------chhhcCchHHHHHHHHHHhcchhhhHHHHHhcccccC
Q 041250           75 -LS----------------------------------------EYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFE  113 (259)
Q Consensus        75 -~~----------------------------------------~~l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~  113 (259)
                       .+                                        +|...++.....|+++|...+....+.+++.+.. ++
T Consensus        98 ~~S~a~~~~~~~~~v~~~~w~~l~dai~eg~~~~~~~~G~~l~~~~~~~~~~~~~~~~sm~~l~~~~~~~il~~~~G-f~  176 (342)
T KOG3178|consen   98 GGSLAPLVLLNTSKVIMNTWQFLKDAILEGGDAFATAHGMMLGGYGGADERFSKDFNGSMSFLSTLVMKKILEVYTG-FK  176 (342)
T ss_pred             CCchhHHHHHhcccchhhhHHHHHHHHHhcccCCccccchhhhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhcc-cc
Confidence             11                                        2223445556788999988888877778888773 78


Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhcccCCCCeEEEeCCCCCCCCCccEEeehhhhccCChHHHHH
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDEECVK  193 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~~~~~~D~~~~~~vlh~~~d~~~~~  193 (259)
                      +....||||||.|..+..+...||+++++.+|+|.+++.++...+.|+.+.+|+|...|+.|+|++.|+||||+|++|++
T Consensus       177 ~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~~P~~daI~mkWiLhdwtDedcvk  256 (342)
T KOG3178|consen  177 GVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQDTPKGDAIWMKWILHDWTDEDCVK  256 (342)
T ss_pred             cCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceecccccccCCCcCeEEEEeecccCChHHHHH
Confidence            88999999999999999999999999999999999999999742679999999999999999999999999999999999


Q ss_pred             HHHHHHHhcccCCCCcEEEEEeeeecC-CCCCchhhhhhhhhhhhhhhcc-CccccCHHHHHHHHhcC
Q 041250          194 ILKKCKEAITRDGKKRKVIIKDMIKEN-RKKDYKSIETQLFFEMFMMVLL-TGTERDEKEWAKIFADS  259 (259)
Q Consensus       194 il~~~~~~L~p~~~gg~lli~e~~~~~-~~~~~~~~~~~~~~d~~m~~~~-~g~~rt~~e~~~ll~~a  259 (259)
                      +|+|++.+|+|   +|+|+|.|.+.|+ +...+........+|+.|++.+ +|++|+.+||+.++.++
T Consensus       257 iLknC~~sL~~---~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~~~  321 (342)
T KOG3178|consen  257 ILKNCKKSLPP---GGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQALLPEE  321 (342)
T ss_pred             HHHHHHHhCCC---CCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHHhcchhh
Confidence            99999999999   9999999999886 3332211234568999999887 69999999999998764

>TIGR00740 methyltransferase, putative

Probab=99.75  E-value=3.7e-17  Score=137.76  Aligned_cols=139  Identities=14%  Similarity=0.178  Sum_probs=110.3

Q ss_pred             CCCCeEEEecCCchHHHHHHHHH--CCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-CCCCccEEeehhh
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKA--FPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AISPAYAVLLKWI  182 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~~~D~~~~~~v  182 (259)
                      .+..+|||||||+|.++..+++.  +|+.+++++|+ +.+++.|++      ...+++++.+|+.+ +.+.+|++++..+
T Consensus        52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~  131 (239)
T TIGR00740        52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT  131 (239)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecc
Confidence            45678999999999999999987  47899999999 899988876      24589999999988 6677999999999


Q ss_pred             hccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhc------------------cCc
Q 041250          183 LLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVL------------------LTG  244 (259)
Q Consensus       183 lh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~------------------~~g  244 (259)
                      +|++++++...++++++++|+|   ||.+++.|.+.+++....+     .+..+.+...                  ..-
T Consensus       132 l~~~~~~~~~~~l~~i~~~Lkp---gG~l~i~d~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  203 (239)
T TIGR00740       132 LQFLPPEDRIALLTKIYEGLNP---NGVLVLSEKFRFEDTKINH-----LLIDLHHQFKRANGYSELEISQKRTALENVM  203 (239)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCC---CeEEEEeecccCCCHhHHH-----HHHHHHHHHHHHcCCCHHHHHHHHHHHhccC
Confidence            9999988888999999999999   9999999988766543211     1222211110                  112


Q ss_pred             cccCHHHHHHHHhcC
Q 041250          245 TERDEKEWAKIFADS  259 (259)
Q Consensus       245 ~~rt~~e~~~ll~~a  259 (259)
                      ...|.+++++++++|
T Consensus       204 ~~~s~~~~~~~l~~a  218 (239)
T TIGR00740       204 RTDSIETHKARLKNV  218 (239)
T ss_pred             CCCCHHHHHHHHHHc
Confidence            467899999999875

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.72  E-value=1.5e-16  Score=132.16  Aligned_cols=106  Identities=21%  Similarity=0.261  Sum_probs=95.1

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-CCC--CccEEeehhhh
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AIS--PAYAVLLKWIL  183 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~~~--~~D~~~~~~vl  183 (259)
                      ..+.+|||||||||.++..+++..+..+++++|+ +.|++.+++     ....|+|+.+|..+ |+|  .||+|.+++.|
T Consensus        50 ~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fgl  129 (238)
T COG2226          50 KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGL  129 (238)
T ss_pred             CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehh
Confidence            3578999999999999999999999999999999 999999987     12339999999999 888  49999999999


Q ss_pred             ccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCC
Q 041250          184 LDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKK  223 (259)
Q Consensus       184 h~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~  223 (259)
                      |+.+|-  .+.|++++|+|+|   ||++++.|+..|+...
T Consensus       130 rnv~d~--~~aL~E~~RVlKp---gG~~~vle~~~p~~~~  164 (238)
T COG2226         130 RNVTDI--DKALKEMYRVLKP---GGRLLVLEFSKPDNPV  164 (238)
T ss_pred             hcCCCH--HHHHHHHHHhhcC---CeEEEEEEcCCCCchh
Confidence            999975  4899999999999   9999999998876644

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.69  E-value=3.2e-16  Score=116.27  Aligned_cols=98  Identities=21%  Similarity=0.351  Sum_probs=84.9

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCC-CC-CC-CCccEEeehh-hh
Q 041250          115 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDM-FK-AI-SPAYAVLLKW-IL  183 (259)
Q Consensus       115 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~-~~-~~-~~~D~~~~~~-vl  183 (259)
                      ..+|||||||+|.++..+++.+|+.+++++|+ |.+++.+++      ..+|++++.+|+ .. .. ++||+|++.. .+
T Consensus         2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~~   81 (112)
T PF12847_consen    2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFTL   81 (112)
T ss_dssp             TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGSG
T ss_pred             CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCcc
Confidence            57899999999999999999999999999999 899988877      469999999999 33 33 3699999999 67


Q ss_pred             ccCCh-HHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250          184 LDWND-EECVKILKKCKEAITRDGKKRKVIIKD  215 (259)
Q Consensus       184 h~~~d-~~~~~il~~~~~~L~p~~~gg~lli~e  215 (259)
                      |++.. ++..++++++++.|+|   ||+++|.+
T Consensus        82 ~~~~~~~~~~~~l~~~~~~L~p---gG~lvi~~  111 (112)
T PF12847_consen   82 HFLLPLDERRRVLERIRRLLKP---GGRLVINT  111 (112)
T ss_dssp             GGCCHHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred             ccccchhHHHHHHHHHHHhcCC---CcEEEEEE
Confidence            75544 6778999999999999   89888865

...

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.69  E-value=1e-15  Score=129.52  Aligned_cols=107  Identities=16%  Similarity=0.235  Sum_probs=94.2

Q ss_pred             CCCCeEEEecCCchHHHHHHHH--HCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-CCCCccEEeehhh
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAK--AFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AISPAYAVLLKWI  182 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~--~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~~~D~~~~~~v  182 (259)
                      .+..+|||||||+|..+..+++  .+|+.+++++|. +.+++.|++      ...+++++.+|+.+ +.+.+|++++..+
T Consensus        55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~  134 (247)
T PRK15451         55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT  134 (247)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhH
Confidence            4567999999999999999988  468999999999 999999877      24589999999987 6667999999999


Q ss_pred             hccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCC
Q 041250          183 LLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRK  222 (259)
Q Consensus       183 lh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~  222 (259)
                      +|++++++...++++++++|+|   ||.+++.|.+..++.
T Consensus       135 l~~l~~~~~~~~l~~i~~~Lkp---GG~l~l~e~~~~~~~  171 (247)
T PRK15451        135 LQFLEPSERQALLDKIYQGLNP---GGALVLSEKFSFEDA  171 (247)
T ss_pred             HHhCCHHHHHHHHHHHHHhcCC---CCEEEEEEecCCCcc
Confidence            9999988888999999999999   999999998766544

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.69  E-value=1.3e-15  Score=130.09  Aligned_cols=146  Identities=16%  Similarity=0.238  Sum_probs=110.9

Q ss_pred             hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEeCCCCC-CCC--C
Q 041250          101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFK-AIS--P  173 (259)
Q Consensus       101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~-~~~--~  173 (259)
                      ...+++.+.  +.+..+|||||||+|..+..+++.+ +.+++++|+ +.+++.+++   ..++++++.+|+.+ ++|  .
T Consensus        41 ~~~~l~~l~--l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~  117 (263)
T PTZ00098         41 TTKILSDIE--LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENT  117 (263)
T ss_pred             HHHHHHhCC--CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCC
Confidence            355666666  7778899999999999999998875 679999999 888888876   34689999999987 665  4


Q ss_pred             ccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccCHHHHH
Q 041250          174 AYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWA  253 (259)
Q Consensus       174 ~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~e~~  253 (259)
                      ||+|++..++|+++.++..++|++++++|+|   ||++++.+.........+   .  ....  ++....-...+.++|.
T Consensus       118 FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkP---GG~lvi~d~~~~~~~~~~---~--~~~~--~~~~~~~~~~~~~~~~  187 (263)
T PTZ00098        118 FDMIYSRDAILHLSYADKKKLFEKCYKWLKP---NGILLITDYCADKIENWD---E--EFKA--YIKKRKYTLIPIQEYG  187 (263)
T ss_pred             eEEEEEhhhHHhCCHHHHHHHHHHHHHHcCC---CcEEEEEEeccccccCcH---H--HHHH--HHHhcCCCCCCHHHHH
Confidence            9999999988888876778999999999999   999999998765432211   0  0111  1111112346888899


Q ss_pred             HHHhcC
Q 041250          254 KIFADS  259 (259)
Q Consensus       254 ~ll~~a  259 (259)
                      +++++|
T Consensus       188 ~~l~~a  193 (263)
T PTZ00098        188 DLIKSC  193 (263)
T ss_pred             HHHHHC
Confidence            888765

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.65  E-value=2e-15  Score=128.75  Aligned_cols=105  Identities=16%  Similarity=0.199  Sum_probs=90.4

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeec-hHHHhhccc--------CCCCeEEEeCCCCC-CCC--CccEEe
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES--------DLVNLKYVGGDMFK-AIS--PAYAVL  178 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~--------~~~ri~~~~~d~~~-~~~--~~D~~~  178 (259)
                      .....+|||||||+|.++..+++.. |+.+++++|+ +++++.|++        ..++++++.+|+.+ |++  .||+|+
T Consensus        71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~  150 (261)
T PLN02233         71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT  150 (261)
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence            4557899999999999999998875 6789999999 899988864        13589999999988 766  499999


Q ss_pred             ehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCC
Q 041250          179 LKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENR  221 (259)
Q Consensus       179 ~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~  221 (259)
                      +..++|++++.  .++|++++++|+|   ||++++.|...+..
T Consensus       151 ~~~~l~~~~d~--~~~l~ei~rvLkp---GG~l~i~d~~~~~~  188 (261)
T PLN02233        151 MGYGLRNVVDR--LKAMQEMYRVLKP---GSRVSILDFNKSTQ  188 (261)
T ss_pred             EecccccCCCH--HHHHHHHHHHcCc---CcEEEEEECCCCCc
Confidence            99999999874  5799999999999   99999999876554

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.65  E-value=7.7e-16  Score=128.82  Aligned_cols=105  Identities=20%  Similarity=0.348  Sum_probs=80.9

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-CCC--CccEEeehh
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AIS--PAYAVLLKW  181 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~~~--~~D~~~~~~  181 (259)
                      ...+.+|||+|||+|.++..+++.. |+.+++++|+ ++|++.|++     ...+|+++.+|..+ |++  .||++++++
T Consensus        45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f  124 (233)
T PF01209_consen   45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF  124 (233)
T ss_dssp             --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES
T ss_pred             CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh
Confidence            4556799999999999999999875 6789999999 999999987     34599999999998 777  499999999


Q ss_pred             hhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCC
Q 041250          182 ILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENR  221 (259)
Q Consensus       182 vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~  221 (259)
                      .+|+.+|.  .+.|++++|+|+|   ||+++|+|+..|..
T Consensus       125 glrn~~d~--~~~l~E~~RVLkP---GG~l~ile~~~p~~  159 (233)
T PF01209_consen  125 GLRNFPDR--ERALREMYRVLKP---GGRLVILEFSKPRN  159 (233)
T ss_dssp             -GGG-SSH--HHHHHHHHHHEEE---EEEEEEEEEEB-SS
T ss_pred             hHHhhCCH--HHHHHHHHHHcCC---CeEEEEeeccCCCC
Confidence            99999985  4799999999999   99999999988765

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PRK06922 hypothetical protein; Provisional

Probab=99.64  E-value=2.9e-15  Score=139.12  Aligned_cols=141  Identities=18%  Similarity=0.248  Sum_probs=109.5

Q ss_pred             chhhcCchHHHHHHHHHHhcchhh--hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhc
Q 041250           77 EYAGDESKLNNFFNEAMASDARLA--TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGL  153 (259)
Q Consensus        77 ~~l~~~~~~~~~f~~~m~~~~~~~--~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a  153 (259)
                      +++..+++..++|...|.......  .......++  +.+..+|||||||+|..+..+++.+|+.+++++|+ +.+++.+
T Consensus       381 d~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d--~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~A  458 (677)
T PRK06922        381 DFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILD--YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTL  458 (677)
T ss_pred             HHhccChhhHhHHHhHHHHHHhccccHHHHHHHhh--hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHH
Confidence            556677777788877665432221  122233344  44578999999999999999999999999999999 7788887


Q ss_pred             cc----CCCCeEEEeCCCCC-C--CC--CccEEeehhhhccC-----------ChHHHHHHHHHHHHhcccCCCCcEEEE
Q 041250          154 ES----DLVNLKYVGGDMFK-A--IS--PAYAVLLKWILLDW-----------NDEECVKILKKCKEAITRDGKKRKVII  213 (259)
Q Consensus       154 ~~----~~~ri~~~~~d~~~-~--~~--~~D~~~~~~vlh~~-----------~d~~~~~il~~~~~~L~p~~~gg~lli  213 (259)
                      ++    ...++.++.+|..+ +  ++  .+|+|+++.++|+|           ++++..++|++++++|+|   ||+++|
T Consensus       459 rarl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKP---GGrLII  535 (677)
T PRK06922        459 KKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKP---GGRIII  535 (677)
T ss_pred             HHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCC---CcEEEE
Confidence            75    23578889999876 3  33  49999999999976           346788999999999999   999999


Q ss_pred             EeeeecCCC
Q 041250          214 KDMIKENRK  222 (259)
Q Consensus       214 ~e~~~~~~~  222 (259)
                      .|.+.+++.
T Consensus       536 ~D~v~~E~~  544 (677)
T PRK06922        536 RDGIMTEDK  544 (677)
T ss_pred             EeCccCCch
Confidence            998777654

>PLN02244 tocopherol O-methyltransferase

Probab=99.62  E-value=2e-14  Score=127.09  Aligned_cols=141  Identities=12%  Similarity=0.125  Sum_probs=102.1

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-CCC--CccEEeehhh
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AIS--PAYAVLLKWI  182 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~--~~D~~~~~~v  182 (259)
                      ....+|||||||+|.++..+++++ +.+++++|+ +.+++.+++      ..++++|+.+|+.+ +++  .||+|++..+
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~  195 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES  195 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence            456799999999999999999988 679999999 788877765      34689999999988 665  5999999999


Q ss_pred             hccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCc-hhh-hhhhhhhhhhhhccCccccCHHHHHHHHhcC
Q 041250          183 LLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDY-KSI-ETQLFFEMFMMVLLTGTERDEKEWAKIFADS  259 (259)
Q Consensus       183 lh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~-~~~-~~~~~~d~~m~~~~~g~~rt~~e~~~ll~~a  259 (259)
                      +|+++|.  .+++++++++|+|   ||+++|.+.......... ... .....++-.......-...+.++|.++++++
T Consensus       196 ~~h~~d~--~~~l~e~~rvLkp---GG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~a  269 (340)
T PLN02244        196 GEHMPDK--RKFVQELARVAAP---GGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESL  269 (340)
T ss_pred             hhccCCH--HHHHHHHHHHcCC---CcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHC
Confidence            9999874  4899999999999   999999987643322110 000 0011111111111111235789999998875

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.60  E-value=1.3e-14  Score=123.31  Aligned_cols=105  Identities=15%  Similarity=0.212  Sum_probs=90.0

Q ss_pred             HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCCC--CCCccEEe
Q 041250          102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKA--ISPAYAVL  178 (259)
Q Consensus       102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~--~~~~D~~~  178 (259)
                      ..+++.+.  .....+|||||||+|.++..+++++|+.+++++|+ +.+++.+++  .+++++.+|+.+.  .+.||+|+
T Consensus        19 ~~ll~~l~--~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~--~~~~~~~~d~~~~~~~~~fD~v~   94 (255)
T PRK14103         19 YDLLARVG--AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE--RGVDARTGDVRDWKPKPDTDVVV   94 (255)
T ss_pred             HHHHHhCC--CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh--cCCcEEEcChhhCCCCCCceEEE
Confidence            45677776  66678999999999999999999999999999999 899988874  3689999998762  23699999


Q ss_pred             ehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250          179 LKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKD  215 (259)
Q Consensus       179 ~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e  215 (259)
                      ++.++|+.++.  .+++++++++|+|   ||++++..
T Consensus        95 ~~~~l~~~~d~--~~~l~~~~~~Lkp---gG~l~~~~  126 (255)
T PRK14103         95 SNAALQWVPEH--ADLLVRWVDELAP---GSWIAVQV  126 (255)
T ss_pred             EehhhhhCCCH--HHHHHHHHHhCCC---CcEEEEEc
Confidence            99999998864  5799999999999   99988864

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.60  E-value=3.1e-14  Score=117.06  Aligned_cols=142  Identities=17%  Similarity=0.144  Sum_probs=108.6

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCC------CeEEEeec-hHHHhhccc--------CCCCeEEEeCCCCC-CCC--Cc
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPK------LECTCFDL-PHVVNGLES--------DLVNLKYVGGDMFK-AIS--PA  174 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~------~~~~~~D~-~~~~~~a~~--------~~~ri~~~~~d~~~-~~~--~~  174 (259)
                      ....++|||+||+|.++..+.+..+.      .+++++|+ |+++..+++        ...++.|+++|..+ |+|  .+
T Consensus        99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~  178 (296)
T KOG1540|consen   99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSF  178 (296)
T ss_pred             CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcc
Confidence            44589999999999999999998777      68999999 999988776        23569999999999 888  49


Q ss_pred             cEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchh------------hh--hhhhhhhhhhh
Q 041250          175 YAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKS------------IE--TQLFFEMFMMV  240 (259)
Q Consensus       175 D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~------------~~--~~~~~d~~m~~  240 (259)
                      |.|.+..-+.+|++-  .+.|++++|+|||   ||++.+.|+..-+...-..+            .+  ..-.....+|+
T Consensus       179 D~yTiafGIRN~th~--~k~l~EAYRVLKp---GGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLv  253 (296)
T KOG1540|consen  179 DAYTIAFGIRNVTHI--QKALREAYRVLKP---GGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLV  253 (296)
T ss_pred             eeEEEecceecCCCH--HHHHHHHHHhcCC---CcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHH
Confidence            999999999999985  4899999999999   99999999865543111000            00  01122233444


Q ss_pred             ccCccccCHHHHHHHHhcC
Q 041250          241 LLTGTERDEKEWAKIFADS  259 (259)
Q Consensus       241 ~~~g~~rt~~e~~~ll~~a  259 (259)
                      ..=.+..+.+|++.+.++|
T Consensus       254 eSI~rfp~qe~f~~mieda  272 (296)
T KOG1540|consen  254 ESIRRFPPQEEFASMIEDA  272 (296)
T ss_pred             hhhhcCCCHHHHHHHHHHc
Confidence            4434567788898888875

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.60  E-value=1.5e-14  Score=118.32  Aligned_cols=113  Identities=17%  Similarity=0.217  Sum_probs=93.4

Q ss_pred             hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-CCC-
Q 041250          101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AIS-  172 (259)
Q Consensus       101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~~~-  172 (259)
                      .+.+++.++  .....+|||+|||+|..+..++++  +.+++++|+ +.+++.+++     ...++++...|+.+ +++ 
T Consensus        19 ~~~l~~~l~--~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~   94 (197)
T PRK11207         19 HSEVLEAVK--VVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDG   94 (197)
T ss_pred             hHHHHHhcc--cCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCC
Confidence            356677776  555689999999999999999986  568999999 888887775     33568899999987 444 


Q ss_pred             CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecC
Q 041250          173 PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKEN  220 (259)
Q Consensus       173 ~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~  220 (259)
                      .||+|++..++|++++++...++++++++|+|   ||++++++.+..+
T Consensus        95 ~fD~I~~~~~~~~~~~~~~~~~l~~i~~~Lkp---gG~~~~~~~~~~~  139 (197)
T PRK11207         95 EYDFILSTVVLMFLEAKTIPGLIANMQRCTKP---GGYNLIVAAMDTA  139 (197)
T ss_pred             CcCEEEEecchhhCCHHHHHHHHHHHHHHcCC---CcEEEEEEEecCC
Confidence            59999999999999988889999999999999   9998777665443

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.59  E-value=3.5e-14  Score=131.12  Aligned_cols=142  Identities=15%  Similarity=0.204  Sum_probs=108.9

Q ss_pred             HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCC-CCC--C
Q 041250          102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-AIS--P  173 (259)
Q Consensus       102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~~~--~  173 (259)
                      ..+++.+.  +....+|||||||+|..+..+++.+ +.+++++|+ +.+++.|++    ...+++|+.+|+++ ++|  .
T Consensus       256 e~l~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~  332 (475)
T PLN02336        256 KEFVDKLD--LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNS  332 (475)
T ss_pred             HHHHHhcC--CCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCC
Confidence            34555555  5667899999999999999998876 779999999 788888765    34689999999988 555  4


Q ss_pred             ccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccCHHHHH
Q 041250          174 AYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWA  253 (259)
Q Consensus       174 ~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~e~~  253 (259)
                      ||+|++..+++++++.  .+++++++++|+|   ||++++.++........+   ...   ..  +...+...++.+++.
T Consensus       333 fD~I~s~~~l~h~~d~--~~~l~~~~r~Lkp---gG~l~i~~~~~~~~~~~~---~~~---~~--~~~~g~~~~~~~~~~  399 (475)
T PLN02336        333 FDVIYSRDTILHIQDK--PALFRSFFKWLKP---GGKVLISDYCRSPGTPSP---EFA---EY--IKQRGYDLHDVQAYG  399 (475)
T ss_pred             EEEEEECCcccccCCH--HHHHHHHHHHcCC---CeEEEEEEeccCCCCCcH---HHH---HH--HHhcCCCCCCHHHHH
Confidence            9999999999999874  4899999999999   999999998765433221   111   11  111244567888999


Q ss_pred             HHHhcC
Q 041250          254 KIFADS  259 (259)
Q Consensus       254 ~ll~~a  259 (259)
                      +++++|
T Consensus       400 ~~l~~a  405 (475)
T PLN02336        400 QMLKDA  405 (475)
T ss_pred             HHHHHC
Confidence            988765

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.59  E-value=2.4e-14  Score=119.85  Aligned_cols=110  Identities=18%  Similarity=0.230  Sum_probs=91.6

Q ss_pred             HHHHhcccccCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-CCC--
Q 041250          103 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AIS--  172 (259)
Q Consensus       103 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~~~--  172 (259)
                      .++..++  .....+|||+|||+|.++..+++.. |+.+++++|+ +.+++.+++     ..++++++.+|..+ +++  
T Consensus        36 ~~l~~l~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~  113 (231)
T TIGR02752        36 DTMKRMN--VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDN  113 (231)
T ss_pred             HHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCC
Confidence            3455555  5667899999999999999999885 7789999999 888887775     34689999999987 555  


Q ss_pred             CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250          173 PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKE  219 (259)
Q Consensus       173 ~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~  219 (259)
                      .+|+|++..++|++++.  .++|+++.+.|+|   ||++++.+...+
T Consensus       114 ~fD~V~~~~~l~~~~~~--~~~l~~~~~~Lk~---gG~l~~~~~~~~  155 (231)
T TIGR02752       114 SFDYVTIGFGLRNVPDY--MQVLREMYRVVKP---GGKVVCLETSQP  155 (231)
T ss_pred             CccEEEEecccccCCCH--HHHHHHHHHHcCc---CeEEEEEECCCC
Confidence            49999999999988775  4799999999999   999999887543

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.58  E-value=4.5e-14  Score=121.19  Aligned_cols=137  Identities=12%  Similarity=0.234  Sum_probs=106.6

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHH-CCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-CCC--CccEEeehh
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKA-FPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AIS--PAYAVLLKW  181 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~~~--~~D~~~~~~  181 (259)
                      +....+|||||||+|..+..+++. .|+.+++++|+ +.+++.|++     ..+++++..+|+.+ +++  .||+|+...
T Consensus        75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~  154 (272)
T PRK11873         75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC  154 (272)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence            556789999999999998887776 46678999999 889988876     34689999999987 655  599999999


Q ss_pred             hhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccCHHHHHHHHhcC
Q 041250          182 ILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAKIFADS  259 (259)
Q Consensus       182 vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~e~~~ll~~a  259 (259)
                      ++|.+++.  .+++++++++|+|   ||++++.+.....+...      ....+..++..+.+..++.++|.++++++
T Consensus       155 v~~~~~d~--~~~l~~~~r~Lkp---GG~l~i~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~e~~~~l~~a  221 (272)
T PRK11873        155 VINLSPDK--ERVFKEAFRVLKP---GGRFAISDVVLRGELPE------EIRNDAELYAGCVAGALQEEEYLAMLAEA  221 (272)
T ss_pred             cccCCCCH--HHHHHHHHHHcCC---CcEEEEEEeeccCCCCH------HHHHhHHHHhccccCCCCHHHHHHHHHHC
Confidence            99988774  4799999999999   99999999876442211      12233444434456677889999998764

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.58  E-value=2.2e-14  Score=112.49  Aligned_cols=99  Identities=21%  Similarity=0.326  Sum_probs=87.0

Q ss_pred             CCCeEEEecCCchHHHHHHH-HHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-C--CC-CccEEeehhh
Q 041250          114 GLNSLVDVGGGTGTAAKAIA-KAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-A--IS-PAYAVLLKWI  182 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~--~~-~~D~~~~~~v  182 (259)
                      ...+|||+|||+|.++..++ +.+|+.+++++|+ +.+++.|++     ..++++|+.+|+.+ +  ++ .||+|++..+
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~~   82 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNGV   82 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEEST
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcCc
Confidence            46799999999999999999 5688999999999 999998887     45699999999999 5  43 6999999999


Q ss_pred             hccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250          183 LLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI  217 (259)
Q Consensus       183 lh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~  217 (259)
                      +|++++..  .+++++.+.|++   +|.+++.+..
T Consensus        83 l~~~~~~~--~~l~~~~~~lk~---~G~~i~~~~~  112 (152)
T PF13847_consen   83 LHHFPDPE--KVLKNIIRLLKP---GGILIISDPN  112 (152)
T ss_dssp             GGGTSHHH--HHHHHHHHHEEE---EEEEEEEEEE
T ss_pred             hhhccCHH--HHHHHHHHHcCC---CcEEEEEECC
Confidence            99998864  789999999999   8999988887

...

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.57  E-value=1.8e-14  Score=103.09  Aligned_cols=89  Identities=20%  Similarity=0.280  Sum_probs=77.2

Q ss_pred             EEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc--CCCCeEEEeCCCCC-CCC--CccEEeehhhhccCChHHHH
Q 041250          119 VDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES--DLVNLKYVGGDMFK-AIS--PAYAVLLKWILLDWNDEECV  192 (259)
Q Consensus       119 lDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~ri~~~~~d~~~-~~~--~~D~~~~~~vlh~~~d~~~~  192 (259)
                      ||+|||+|..+..+++. +..+++++|. +++++.+++  ...++++..+|+.+ +++  .||+|++.+++|++  ++..
T Consensus         1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~--~~~~   77 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL--EDPE   77 (95)
T ss_dssp             EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS--SHHH
T ss_pred             CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec--cCHH
Confidence            79999999999999999 8889999999 788888887  55677899999988 766  49999999999999  4467


Q ss_pred             HHHHHHHHhcccCCCCcEEEE
Q 041250          193 KILKKCKEAITRDGKKRKVII  213 (259)
Q Consensus       193 ~il~~~~~~L~p~~~gg~lli  213 (259)
                      +++++++++|+|   ||+++|
T Consensus        78 ~~l~e~~rvLk~---gG~l~~   95 (95)
T PF08241_consen   78 AALREIYRVLKP---GGRLVI   95 (95)
T ss_dssp             HHHHHHHHHEEE---EEEEEE
T ss_pred             HHHHHHHHHcCc---CeEEeC
Confidence            999999999999   898875

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.57  E-value=4.8e-14  Score=120.04  Aligned_cols=107  Identities=15%  Similarity=0.260  Sum_probs=92.4

Q ss_pred             hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCCCC--CCccEE
Q 041250          101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKAI--SPAYAV  177 (259)
Q Consensus       101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~--~~~D~~  177 (259)
                      ...+++.++  ..+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++...+++++.+|+.+..  .+||+|
T Consensus        20 ~~~ll~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v   97 (258)
T PRK01683         20 ARDLLARVP--LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLI   97 (258)
T ss_pred             HHHHHhhCC--CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEE
Confidence            455677776  66778999999999999999999999999999999 8999999876678999999997622  269999


Q ss_pred             eehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEE
Q 041250          178 LLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIK  214 (259)
Q Consensus       178 ~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~  214 (259)
                      +++.++|..++.  .+++++++++|+|   ||++++.
T Consensus        98 ~~~~~l~~~~d~--~~~l~~~~~~Lkp---gG~~~~~  129 (258)
T PRK01683         98 FANASLQWLPDH--LELFPRLVSLLAP---GGVLAVQ  129 (258)
T ss_pred             EEccChhhCCCH--HHHHHHHHHhcCC---CcEEEEE
Confidence            999999988764  4799999999999   8988775

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.57  E-value=3.4e-14  Score=124.55  Aligned_cols=129  Identities=22%  Similarity=0.284  Sum_probs=101.6

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc--CCCCeEEEeCCCCC-CCC--CccEEeehhhhccCC
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES--DLVNLKYVGGDMFK-AIS--PAYAVLLKWILLDWN  187 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~ri~~~~~d~~~-~~~--~~D~~~~~~vlh~~~  187 (259)
                      ...+|||||||+|.++..+++.+|..+++++|. +.+++.+++  ...+++++.+|+.+ +++  .||+|++..++|+++
T Consensus       113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~  192 (340)
T PLN02490        113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWP  192 (340)
T ss_pred             CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCC
Confidence            457999999999999999999988889999999 888888876  34689999999987 554  499999999999999


Q ss_pred             hHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccCHHHHHHHHhcC
Q 041250          188 DEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAKIFADS  259 (259)
Q Consensus       188 d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~e~~~ll~~a  259 (259)
                      +.+  ++|++++++|+|   ||++++.+.+.+.....      ....+..+      ...+.+|+.+++++|
T Consensus       193 d~~--~~L~e~~rvLkP---GG~LvIi~~~~p~~~~~------r~~~~~~~------~~~t~eEl~~lL~~a  247 (340)
T PLN02490        193 DPQ--RGIKEAYRVLKI---GGKACLIGPVHPTFWLS------RFFADVWM------LFPKEEEYIEWFTKA  247 (340)
T ss_pred             CHH--HHHHHHHHhcCC---CcEEEEEEecCcchhHH------HHhhhhhc------cCCCHHHHHHHHHHC
Confidence            864  689999999999   99999887654321110      11122222      126789999999875

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.55  E-value=1e-13  Score=115.46  Aligned_cols=98  Identities=14%  Similarity=0.223  Sum_probs=85.7

Q ss_pred             CeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-CCC-CccEEeehhhhccC
Q 041250          116 NSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AIS-PAYAVLLKWILLDW  186 (259)
Q Consensus       116 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~-~~D~~~~~~vlh~~  186 (259)
                      .+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++      ..++++++..|+.+ +.+ .||+|+...++|++
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~   80 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI   80 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence            3799999999999999999999999999999 777777765      35789999999976 555 59999999999998


Q ss_pred             ChHHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 041250          187 NDEECVKILKKCKEAITRDGKKRKVIIKDMIK  218 (259)
Q Consensus       187 ~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~  218 (259)
                      ++.  ..+|+++++.|+|   ||++++.+...
T Consensus        81 ~~~--~~~l~~~~~~Lkp---gG~l~i~~~~~  107 (224)
T smart00828       81 KDK--MDLFSNISRHLKD---GGHLVLADFIA  107 (224)
T ss_pred             CCH--HHHHHHHHHHcCC---CCEEEEEEccc
Confidence            774  5899999999999   99999998754

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.53  E-value=9.8e-14  Score=114.03  Aligned_cols=104  Identities=16%  Similarity=0.280  Sum_probs=90.2

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCCCCC--CccEEeehhhhccCCh
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKAIS--PAYAVLLKWILLDWND  188 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~~--~~D~~~~~~vlh~~~d  188 (259)
                      .++..+|||||||+|.++..+++..|+.+++++|+ +++++.|++...++.+..+|+.++.+  .||+|++..++|++++
T Consensus        41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~hl~p  120 (204)
T TIGR03587        41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLIHINP  120 (204)
T ss_pred             cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhhhCCH
Confidence            45567899999999999999999889999999999 89999998755678999999988654  5999999999999988


Q ss_pred             HHHHHHHHHHHHhcccCCCCcEEEEEeeeecC
Q 041250          189 EECVKILKKCKEAITRDGKKRKVIIKDMIKEN  220 (259)
Q Consensus       189 ~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~  220 (259)
                      ++..++++++.++++     +.++|.|...+.
T Consensus       121 ~~~~~~l~el~r~~~-----~~v~i~e~~~~~  147 (204)
T TIGR03587       121 DNLPTAYRELYRCSN-----RYILIAEYYNPS  147 (204)
T ss_pred             HHHHHHHHHHHhhcC-----cEEEEEEeeCCC
Confidence            888899999999863     788998886544

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.53  E-value=2.1e-13  Score=119.53  Aligned_cols=143  Identities=10%  Similarity=0.071  Sum_probs=99.8

Q ss_pred             HHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-CCC-Cc
Q 041250          104 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AIS-PA  174 (259)
Q Consensus       104 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~-~~  174 (259)
                      +...++  .....+|||||||+|.++..+++..+. +++++|. +.++.+++.      ...++.++.+|+.+ +.+ .|
T Consensus       114 l~~~l~--~l~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~F  190 (322)
T PRK15068        114 VLPHLS--PLKGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAF  190 (322)
T ss_pred             HHHhhC--CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCc
Confidence            344444  234579999999999999999998766 5999998 555544321      24689999999887 544 59


Q ss_pred             cEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccCHHHHHH
Q 041250          175 YAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAK  254 (259)
Q Consensus       175 D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~e~~~  254 (259)
                      |+|++..++|+..+.  ..+|+++++.|+|   ||.+++...+.+.+.... ......+..  |-  ..-..+|.+++.+
T Consensus       191 D~V~s~~vl~H~~dp--~~~L~~l~~~Lkp---GG~lvl~~~~i~~~~~~~-l~p~~~y~~--~~--~~~~lps~~~l~~  260 (322)
T PRK15068        191 DTVFSMGVLYHRRSP--LDHLKQLKDQLVP---GGELVLETLVIDGDENTV-LVPGDRYAK--MR--NVYFIPSVPALKN  260 (322)
T ss_pred             CEEEECChhhccCCH--HHHHHHHHHhcCC---CcEEEEEEEEecCCCccc-cCchhHHhc--Cc--cceeCCCHHHHHH
Confidence            999999999988764  4799999999999   999988776666544321 000001100  00  0012468899999


Q ss_pred             HHhcC
Q 041250          255 IFADS  259 (259)
Q Consensus       255 ll~~a  259 (259)
                      ++++|
T Consensus       261 ~L~~a  265 (322)
T PRK15068        261 WLERA  265 (322)
T ss_pred             HHHHc
Confidence            98875

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.53  E-value=1.3e-13  Score=112.70  Aligned_cols=111  Identities=13%  Similarity=0.152  Sum_probs=89.4

Q ss_pred             HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCC-CCC-Cc
Q 041250          102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-AIS-PA  174 (259)
Q Consensus       102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~~~-~~  174 (259)
                      ..+++.++  ...+.+|||+|||+|.++..++++  +.+++++|+ +.+++.+++    ..-++.+...|+.. +.+ .|
T Consensus        20 ~~l~~~~~--~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~f   95 (195)
T TIGR00477        20 SAVREAVK--TVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDY   95 (195)
T ss_pred             HHHHHHhc--cCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCC
Confidence            45666666  445679999999999999999986  568999999 888887665    22247788888765 333 59


Q ss_pred             cEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250          175 YAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKE  219 (259)
Q Consensus       175 D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~  219 (259)
                      |+|+++.++|+++++....++++++++|+|   ||++++++....
T Consensus        96 D~I~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lli~~~~~~  137 (195)
T TIGR00477        96 DFIFSTVVFMFLQAGRVPEIIANMQAHTRP---GGYNLIVAAMDT  137 (195)
T ss_pred             CEEEEecccccCCHHHHHHHHHHHHHHhCC---CcEEEEEEeccc
Confidence            999999999999888888999999999999   999888776543

Part of a tellurite-reducing operon tehA and tehB

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.53  E-value=1.1e-13  Score=118.04  Aligned_cols=101  Identities=12%  Similarity=0.219  Sum_probs=84.7

Q ss_pred             CCCCeEEEecCCchH----HHHHHHHHCC-----CCeEEEeec-hHHHhhcccC--------------------------
Q 041250          113 EGLNSLVDVGGGTGT----AAKAIAKAFP-----KLECTCFDL-PHVVNGLESD--------------------------  156 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~----~~~~l~~~~p-----~~~~~~~D~-~~~~~~a~~~--------------------------  156 (259)
                      .+..+|+|+|||+|.    +++.+++..|     +.++++.|+ +.+++.|++.                          
T Consensus        98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~  177 (264)
T smart00138       98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY  177 (264)
T ss_pred             CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence            345799999999996    5666777655     578999999 8999988861                          


Q ss_pred             ------CCCeEEEeCCCCC-CCC--CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          157 ------LVNLKYVGGDMFK-AIS--PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       157 ------~~ri~~~~~d~~~-~~~--~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                            ..+|+|..+|+.+ +.+  +||+|+++++||+++++...+++++++++|+|   ||.+++-..
T Consensus       178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~p---GG~L~lg~~  243 (264)
T smart00138      178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKP---GGYLFLGHS  243 (264)
T ss_pred             EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCC---CeEEEEECc
Confidence                  1479999999998 333  59999999999999998888999999999999   999888654

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>TIGR00452 methyltransferase, putative

Probab=99.50  E-value=5.2e-13  Score=116.15  Aligned_cols=110  Identities=13%  Similarity=0.090  Sum_probs=85.9

Q ss_pred             HHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-CC-CCc
Q 041250          104 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AI-SPA  174 (259)
Q Consensus       104 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~-~~~  174 (259)
                      ++..+.  .....+|||||||+|.++..++...++ +++++|. +.++.+++.      ...++.+...++.+ +. ..|
T Consensus       113 ~l~~l~--~~~g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~F  189 (314)
T TIGR00452       113 VLPHLS--PLKGRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAF  189 (314)
T ss_pred             HHHhcC--CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCc
Confidence            444444  344579999999999999999988764 7999998 556654322      34688888888766 33 369


Q ss_pred             cEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCC
Q 041250          175 YAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENR  221 (259)
Q Consensus       175 D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~  221 (259)
                      |+|++..++|++++.  ...|++++++|+|   ||.|++.+.+.+.+
T Consensus       190 D~V~s~gvL~H~~dp--~~~L~el~r~Lkp---GG~Lvletl~i~g~  231 (314)
T TIGR00452       190 DTVFSMGVLYHRKSP--LEHLKQLKHQLVI---KGELVLETLVIDGD  231 (314)
T ss_pred             CEEEEcchhhccCCH--HHHHHHHHHhcCC---CCEEEEEEEEecCc
Confidence            999999999999775  4799999999999   99999988776543

Known examples to date are restricted to the proteobacteria.

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.50  E-value=1.2e-13  Score=100.74  Aligned_cols=89  Identities=22%  Similarity=0.362  Sum_probs=74.9

Q ss_pred             EEEecCCchHHHHHHHHHC---CCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCC-CCC--CccEEeeh-hhhcc
Q 041250          118 LVDVGGGTGTAAKAIAKAF---PKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-AIS--PAYAVLLK-WILLD  185 (259)
Q Consensus       118 vlDvGgG~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~~~--~~D~~~~~-~vlh~  185 (259)
                      |||+|||+|..+..+++.+   |..+++++|+ +++++.+++    ...+++|+++|+.+ ++.  .||+|++. .++|+
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~   80 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH   80 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence            7999999999999999986   5689999999 899998887    33599999999988 433  69999995 55999


Q ss_pred             CChHHHHHHHHHHHHhcccCCCCc
Q 041250          186 WNDEECVKILKKCKEAITRDGKKR  209 (259)
Q Consensus       186 ~~d~~~~~il~~~~~~L~p~~~gg  209 (259)
                      +++++..++++++.+.++|   ||
T Consensus        81 ~~~~~~~~ll~~~~~~l~p---gG  101 (101)
T PF13649_consen   81 LSPEELEALLRRIARLLRP---GG  101 (101)
T ss_dssp             SSHHHHHHHHHHHHHTEEE---EE
T ss_pred             CCHHHHHHHHHHHHHHhCC---CC
Confidence            9999999999999999999   66

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.50  E-value=6.2e-13  Score=110.28  Aligned_cols=111  Identities=19%  Similarity=0.234  Sum_probs=91.6

Q ss_pred             HHHhcccccCCCCeEEEecCCchHHHHHHHHHCCC-CeEEEeec-hHHHhhccc---CCCCeEEEeCCCCC-CCC--Ccc
Q 041250          104 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPK-LECTCFDL-PHVVNGLES---DLVNLKYVGGDMFK-AIS--PAY  175 (259)
Q Consensus       104 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~-~~~--~~D  175 (259)
                      ++..+.  ..+..+|||+|||+|.++..+++.+|. .+++++|+ +.+++.+++   ...+++++.+|+.+ +.+  .+|
T Consensus        31 ~~~~~~--~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D  108 (223)
T TIGR01934        31 AVKLIG--VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFD  108 (223)
T ss_pred             HHHHhc--cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEE
Confidence            444444  446789999999999999999999987 78999999 788877765   34689999999987 443  599


Q ss_pred             EEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCC
Q 041250          176 AVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENR  221 (259)
Q Consensus       176 ~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~  221 (259)
                      ++++.+++|+.++  ...+++++++.|+|   ||++++.+...+..
T Consensus       109 ~i~~~~~~~~~~~--~~~~l~~~~~~L~~---gG~l~~~~~~~~~~  149 (223)
T TIGR01934       109 AVTIAFGLRNVTD--IQKALREMYRVLKP---GGRLVILEFSKPAN  149 (223)
T ss_pred             EEEEeeeeCCccc--HHHHHHHHHHHcCC---CcEEEEEEecCCCc
Confidence            9999999998876  45899999999999   99999998865443

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.50  E-value=7.4e-15  Score=106.68  Aligned_cols=88  Identities=19%  Similarity=0.286  Sum_probs=59.7

Q ss_pred             EEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCC---CeEEEeCCCCCCC-C-CccEEeehhhhccCC
Q 041250          119 VDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLV---NLKYVGGDMFKAI-S-PAYAVLLKWILLDWN  187 (259)
Q Consensus       119 lDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~---ri~~~~~d~~~~~-~-~~D~~~~~~vlh~~~  187 (259)
                      ||||||+|.++..+++.+|..+++++|+ +.+++.+++     ...   ++++...|.++.. + .||+|++.+++|+++
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~   80 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE   80 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence            7999999999999999999999999999 899988877     222   4455555555533 3 699999999999994


Q ss_pred             hHHHHHHHHHHHHhcccCCCCcEE
Q 041250          188 DEECVKILKKCKEAITRDGKKRKV  211 (259)
Q Consensus       188 d~~~~~il~~~~~~L~p~~~gg~l  211 (259)
                      +  ...+++++++.|+|   ||+|
T Consensus        81 ~--~~~~l~~~~~~L~p---gG~l   99 (99)
T PF08242_consen   81 D--IEAVLRNIYRLLKP---GGIL   99 (99)
T ss_dssp             ---HHHHHHHHTTT-TS---S-EE
T ss_pred             h--HHHHHHHHHHHcCC---CCCC
Confidence            4  56999999999999   8875

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK08317 hypothetical protein; Provisional

Probab=99.50  E-value=9e-13  Score=110.29  Aligned_cols=107  Identities=19%  Similarity=0.235  Sum_probs=90.5

Q ss_pred             HHHhcccccCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCC-CCC--Cc
Q 041250          104 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-AIS--PA  174 (259)
Q Consensus       104 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~~~--~~  174 (259)
                      +++.+.  +....+|||+|||+|.++..+++.+ |..+++++|+ +..++.+++    ...++++..+|+.. +++  .|
T Consensus        11 ~~~~~~--~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~   88 (241)
T PRK08317         11 TFELLA--VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSF   88 (241)
T ss_pred             HHHHcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCc
Confidence            445555  6667899999999999999999988 7889999999 777777765    35789999999877 544  59


Q ss_pred             cEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250          175 YAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI  217 (259)
Q Consensus       175 D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~  217 (259)
                      |+|++.+++|++++.  ..+++++.++|+|   ||.+++.++.
T Consensus        89 D~v~~~~~~~~~~~~--~~~l~~~~~~L~~---gG~l~~~~~~  126 (241)
T PRK08317         89 DAVRSDRVLQHLEDP--ARALAEIARVLRP---GGRVVVLDTD  126 (241)
T ss_pred             eEEEEechhhccCCH--HHHHHHHHHHhcC---CcEEEEEecC
Confidence            999999999999874  4789999999999   9999998854

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.49  E-value=8.4e-13  Score=110.63  Aligned_cols=111  Identities=22%  Similarity=0.205  Sum_probs=91.3

Q ss_pred             HHHhcccccCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-CCC--
Q 041250          104 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AIS--  172 (259)
Q Consensus       104 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~--  172 (259)
                      ++..+.  ..+..+|||+|||+|.++..+++.+| +.+++++|+ +.+++.+++      ...++.++.+|+.+ +.+  
T Consensus        43 ~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~  120 (239)
T PRK00216         43 TIKWLG--VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDN  120 (239)
T ss_pred             HHHHhC--CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCC
Confidence            444444  34567999999999999999999998 789999999 778777776      24679999999987 433  


Q ss_pred             CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCC
Q 041250          173 PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENR  221 (259)
Q Consensus       173 ~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~  221 (259)
                      .+|+|++++++|++++.  ..+|+++.+.|+|   ||++++++...+..
T Consensus       121 ~~D~I~~~~~l~~~~~~--~~~l~~~~~~L~~---gG~li~~~~~~~~~  164 (239)
T PRK00216        121 SFDAVTIAFGLRNVPDI--DKALREMYRVLKP---GGRLVILEFSKPTN  164 (239)
T ss_pred             CccEEEEecccccCCCH--HHHHHHHHHhccC---CcEEEEEEecCCCc
Confidence            59999999999998874  5789999999999   99999999876543

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.49  E-value=2.1e-13  Score=119.12  Aligned_cols=135  Identities=15%  Similarity=0.085  Sum_probs=97.1

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-CCC--CccEEeehhhh
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AIS--PAYAVLLKWIL  183 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~--~~D~~~~~~vl  183 (259)
                      ...+|||||||+|.++..+++.  +.+++++|. +.+++.|++      ...+++++.+|+.+ +.+  .||+|++..++
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~~--g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL  208 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLARM--GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI  208 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence            3468999999999999988863  679999999 889988875      22589999999876 433  59999999999


Q ss_pred             ccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhh-hhcc----CccccCHHHHHHHHhc
Q 041250          184 LDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFM-MVLL----TGTERDEKEWAKIFAD  258 (259)
Q Consensus       184 h~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m-~~~~----~g~~rt~~e~~~ll~~  258 (259)
                      |++++..  .+|+++++.|+|   ||.+++........    .+..........+ ++..    ..+..+.+|+++++++
T Consensus       209 eHv~d~~--~~L~~l~r~LkP---GG~liist~nr~~~----~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~  279 (322)
T PLN02396        209 EHVANPA--EFCKSLSALTIP---NGATVLSTINRTMR----AYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQR  279 (322)
T ss_pred             HhcCCHH--HHHHHHHHHcCC---CcEEEEEECCcCHH----HHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHH
Confidence            9999864  799999999999   99988887532110    0000000000011 1111    2346899999999987


Q ss_pred             C
Q 041250          259 S  259 (259)
Q Consensus       259 a  259 (259)
                      +
T Consensus       280 a  280 (322)
T PLN02396        280 A  280 (322)
T ss_pred             c
Confidence            5

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.48  E-value=1.5e-12  Score=110.38  Aligned_cols=124  Identities=13%  Similarity=0.184  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHhcch------hhhHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCC
Q 041250           85 LNNFFNEAMASDAR------LATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDL  157 (259)
Q Consensus        85 ~~~~f~~~m~~~~~------~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~  157 (259)
                      ..+.|.++...+..      ..+..+++.++  .....+|||+|||+|.++..+.+.  ..+++++|+ +.+++.+++..
T Consensus         9 i~~~F~~aa~~Y~~~~~~q~~~a~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~   84 (251)
T PRK10258          9 IAAAFGRAAAHYEQHAELQRQSADALLAMLP--QRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKD   84 (251)
T ss_pred             HHHHHHHHHHhHhHHHHHHHHHHHHHHHhcC--ccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhC
Confidence            44567766554432      22344555555  345678999999999999888764  568999999 89999888754


Q ss_pred             CCeEEEeCCCCC-CCC--CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250          158 VNLKYVGGDMFK-AIS--PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI  217 (259)
Q Consensus       158 ~ri~~~~~d~~~-~~~--~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~  217 (259)
                      ..+.++.+|+.+ +++  .||+|+.+.++|..++  ...+|+++.++|+|   ||.+++..+.
T Consensus        85 ~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~d--~~~~l~~~~~~Lk~---gG~l~~~~~~  142 (251)
T PRK10258         85 AADHYLAGDIESLPLATATFDLAWSNLAVQWCGN--LSTALRELYRVVRP---GGVVAFTTLV  142 (251)
T ss_pred             CCCCEEEcCcccCcCCCCcEEEEEECchhhhcCC--HHHHHHHHHHHcCC---CeEEEEEeCC
Confidence            556889999987 555  4999999999986665  35899999999999   8998887654

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.48  E-value=1e-12  Score=110.05  Aligned_cols=98  Identities=19%  Similarity=0.285  Sum_probs=84.6

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-CCCCeEEEeCCCCC-CCC--CccEEeehhhhccCCh
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-DLVNLKYVGGDMFK-AIS--PAYAVLLKWILLDWND  188 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri~~~~~d~~~-~~~--~~D~~~~~~vlh~~~d  188 (259)
                      ...+|||+|||+|.++..+++.+|+.+++++|+ +.++..+++ ..++++++.+|+.+ +.+  .||+|++.+++|+.++
T Consensus        34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~  113 (240)
T TIGR02072        34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDD  113 (240)
T ss_pred             CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccC
Confidence            357899999999999999999999999999999 788877776 44689999999987 544  4999999999998766


Q ss_pred             HHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          189 EECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       189 ~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      .  .++|+++.++|+|   ||.+++.++
T Consensus       114 ~--~~~l~~~~~~L~~---~G~l~~~~~  136 (240)
T TIGR02072       114 L--SQALSELARVLKP---GGLLAFSTF  136 (240)
T ss_pred             H--HHHHHHHHHHcCC---CcEEEEEeC
Confidence            3  4799999999999   999988764

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.47  E-value=9e-13  Score=121.76  Aligned_cols=114  Identities=17%  Similarity=0.268  Sum_probs=94.4

Q ss_pred             hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEeCCCCC---CCC-
Q 041250          101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFK---AIS-  172 (259)
Q Consensus       101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~---~~~-  172 (259)
                      .+.+++.++  ..+..+|||||||+|.++..+++..  .+++++|. +.+++.+++   ..++++++.+|+.+   ++| 
T Consensus        26 ~~~il~~l~--~~~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~  101 (475)
T PLN02336         26 RPEILSLLP--PYEGKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISD  101 (475)
T ss_pred             hhHHHhhcC--ccCCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCC
Confidence            345566655  4456799999999999999999885  37899999 888877654   35689999999964   344 


Q ss_pred             -CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCC
Q 041250          173 -PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENR  221 (259)
Q Consensus       173 -~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~  221 (259)
                       .||+|++..++|++++++..++++++++.|+|   ||++++.|......
T Consensus       102 ~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~---gG~l~~~d~~~~~~  148 (475)
T PLN02336        102 GSVDLIFSNWLLMYLSDKEVENLAERMVKWLKV---GGYIFFRESCFHQS  148 (475)
T ss_pred             CCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCC---CeEEEEEeccCCCC
Confidence             49999999999999998888999999999999   99999999876544

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.47  E-value=5.3e-13  Score=113.53  Aligned_cols=128  Identities=13%  Similarity=0.117  Sum_probs=94.7

Q ss_pred             chHHHHHHHHHHhcchhh------hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc
Q 041250           83 SKLNNFFNEAMASDARLA------TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES  155 (259)
Q Consensus        83 ~~~~~~f~~~m~~~~~~~------~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~  155 (259)
                      .+.++.|.+.+-+.....      ...+.+.+.+...+..+|||+|||+|.++..+++.  +.+++++|+ +++++.|++
T Consensus         7 d~~a~~f~~~~y~~~~g~~r~~~~~~~~~~~l~~l~~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~   84 (255)
T PRK11036          7 DDIAEKFSRNIYGTTKGQIRQAILWQDLDRLLAELPPRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQ   84 (255)
T ss_pred             hhHHHHHHHhccCCCccHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHH
Confidence            355677777665443211      11111222211245679999999999999999987  468999999 899988876


Q ss_pred             ------CCCCeEEEeCCCCC--CCC--CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250          156 ------DLVNLKYVGGDMFK--AIS--PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI  217 (259)
Q Consensus       156 ------~~~ri~~~~~d~~~--~~~--~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~  217 (259)
                            ..++++++.+|+.+  +.+  .||+|++..++|++++.  .++++++.++|+|   ||+++++...
T Consensus        85 ~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl~~~~~~--~~~l~~~~~~Lkp---gG~l~i~~~n  151 (255)
T PRK11036         85 AAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVLEWVADP--KSVLQTLWSVLRP---GGALSLMFYN  151 (255)
T ss_pred             HHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHHHhhCCH--HHHHHHHHHHcCC---CeEEEEEEEC
Confidence                  24689999999876  233  59999999999998775  4799999999999   9999887543

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.46  E-value=2e-12  Score=109.62  Aligned_cols=116  Identities=14%  Similarity=0.136  Sum_probs=101.8

Q ss_pred             hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCCCCC
Q 041250          101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAISP  173 (259)
Q Consensus       101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~~  173 (259)
                      .+.+++++.  +.++.+|||||||-|.+++.++++| +++++++++ ++..+.+++      ..++|++.-.|+.+....
T Consensus        61 ~~~~~~kl~--L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~  137 (283)
T COG2230          61 LDLILEKLG--LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEP  137 (283)
T ss_pred             HHHHHHhcC--CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccc
Confidence            356778888  8999999999999999999999999 999999999 666666655      456999999999885555


Q ss_pred             ccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCC
Q 041250          174 AYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRK  222 (259)
Q Consensus       174 ~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~  222 (259)
                      ||-|+..-.++++..+.-...++++++.|+|   ||++++.....++..
T Consensus       138 fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~---~G~~llh~I~~~~~~  183 (283)
T COG2230         138 FDRIVSVGMFEHVGKENYDDFFKKVYALLKP---GGRMLLHSITGPDQE  183 (283)
T ss_pred             cceeeehhhHHHhCcccHHHHHHHHHhhcCC---CceEEEEEecCCCcc
Confidence            9999999999999998888999999999999   999999988777644

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.46  E-value=4.4e-13  Score=107.82  Aligned_cols=108  Identities=16%  Similarity=0.274  Sum_probs=95.7

Q ss_pred             hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCC--CCCCccEE
Q 041250          101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK--AISPAYAV  177 (259)
Q Consensus       101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~--~~~~~D~~  177 (259)
                      +..++..++  .....+|+|+|||+|.-...|++++|+..++++|- ++|++.|++...+++|..+|+.+  |-+..|++
T Consensus        19 a~dLla~Vp--~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~~dll   96 (257)
T COG4106          19 ARDLLARVP--LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQPTDLL   96 (257)
T ss_pred             HHHHHhhCC--ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCccchh
Confidence            466888888  78889999999999999999999999999999998 99999998899999999999998  44469999


Q ss_pred             eehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250          178 LLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKD  215 (259)
Q Consensus       178 ~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e  215 (259)
                      +.+.+||-.+|-  .++|.++...|.|   ||.|-+.=
T Consensus        97 faNAvlqWlpdH--~~ll~rL~~~L~P---gg~LAVQm  129 (257)
T COG4106          97 FANAVLQWLPDH--PELLPRLVSQLAP---GGVLAVQM  129 (257)
T ss_pred             hhhhhhhhcccc--HHHHHHHHHhhCC---CceEEEEC
Confidence            999999977774  5899999999999   88766543

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.45  E-value=6e-13  Score=113.84  Aligned_cols=114  Identities=10%  Similarity=0.084  Sum_probs=87.6

Q ss_pred             HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCCCCCc
Q 041250          102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAISPA  174 (259)
Q Consensus       102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~~~  174 (259)
                      ..+++.++  +.++.+|||||||-|.++..+++++ +++++++.+ ++..+.+++      ..+++++...|+.+..+.|
T Consensus        52 ~~~~~~~~--l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~f  128 (273)
T PF02353_consen   52 DLLCEKLG--LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKF  128 (273)
T ss_dssp             HHHHTTTT----TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-
T ss_pred             HHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCC
Confidence            45677777  8888999999999999999999999 899999999 555555544      5689999999998733379


Q ss_pred             cEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCC
Q 041250          175 YAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENR  221 (259)
Q Consensus       175 D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~  221 (259)
                      |.|+...++.+.+.+.-..+++++.+.|+|   ||++++.....+..
T Consensus       129 D~IvSi~~~Ehvg~~~~~~~f~~~~~~Lkp---gG~~~lq~i~~~~~  172 (273)
T PF02353_consen  129 DRIVSIEMFEHVGRKNYPAFFRKISRLLKP---GGRLVLQTITHRDP  172 (273)
T ss_dssp             SEEEEESEGGGTCGGGHHHHHHHHHHHSET---TEEEEEEEEEE--H
T ss_pred             CEEEEEechhhcChhHHHHHHHHHHHhcCC---CcEEEEEecccccc
Confidence            999999999999888788999999999999   99999888776654

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.45  E-value=8.5e-13  Score=103.76  Aligned_cols=129  Identities=17%  Similarity=0.174  Sum_probs=93.1

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCC---CCCCccEEeehhhhccCC
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK---AISPAYAVLLKWILLDWN  187 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~---~~~~~D~~~~~~vlh~~~  187 (259)
                      .....+|||||||+|.++..+.+...  +++++|. +.+++.     .++.....+...   +...||+|++..+||+.+
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~-----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~   92 (161)
T PF13489_consen   20 LKPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEK-----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLP   92 (161)
T ss_dssp             TTTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHH-----TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSS
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhh-----hhhhhhhhhhhhhhccccchhhHhhHHHHhhcc
Confidence            35678999999999999999966633  9999999 777766     223333322223   223699999999999999


Q ss_pred             hHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhc--cCccccCHHHHHHHHhcC
Q 041250          188 DEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVL--LTGTERDEKEWAKIFADS  259 (259)
Q Consensus       188 d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~--~~g~~rt~~e~~~ll~~a  259 (259)
                      +  ...+|+++.+.|+|   ||.+++.++......       ...+..+.+...  .....++.++|+++++++
T Consensus        93 d--~~~~l~~l~~~Lkp---gG~l~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~  154 (161)
T PF13489_consen   93 D--PEEFLKELSRLLKP---GGYLVISDPNRDDPS-------PRSFLKWRYDRPYGGHVHFFSPDELRQLLEQA  154 (161)
T ss_dssp             H--HHHHHHHHHHCEEE---EEEEEEEEEBTTSHH-------HHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHT
T ss_pred             c--HHHHHHHHHHhcCC---CCEEEEEEcCCcchh-------hhHHHhcCCcCccCceeccCCHHHHHHHHHHC
Confidence            6  56899999999999   899999987653311       112222222222  455789999999999875

...

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.45  E-value=1.3e-12  Score=113.09  Aligned_cols=110  Identities=17%  Similarity=0.201  Sum_probs=88.4

Q ss_pred             HHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCC-CCC-Ccc
Q 041250          103 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-AIS-PAY  175 (259)
Q Consensus       103 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~~~-~~D  175 (259)
                      .++..++  .....+|||+|||+|..+..+++.  +.+++++|. +.+++.+++    ..-++++...|+.. +.+ .||
T Consensus       111 ~~~~~~~--~~~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD  186 (287)
T PRK12335        111 EVLEAVQ--TVKPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYD  186 (287)
T ss_pred             HHHHHhh--ccCCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCcc
Confidence            3444444  334569999999999999999886  579999999 788887665    23378899999877 344 599


Q ss_pred             EEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250          176 AVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKE  219 (259)
Q Consensus       176 ~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~  219 (259)
                      +|++..++|+.++++...+++++.+.|+|   ||+++++.....
T Consensus       187 ~I~~~~vl~~l~~~~~~~~l~~~~~~Lkp---gG~~l~v~~~~~  227 (287)
T PRK12335        187 FILSTVVLMFLNRERIPAIIKNMQEHTNP---GGYNLIVCAMDT  227 (287)
T ss_pred             EEEEcchhhhCCHHHHHHHHHHHHHhcCC---CcEEEEEEeccc
Confidence            99999999999988888999999999999   999887765543

>PLN03075 nicotianamine synthase; Provisional

Probab=99.44  E-value=8.8e-13  Score=112.94  Aligned_cols=99  Identities=15%  Similarity=0.215  Sum_probs=81.6

Q ss_pred             CCCCeEEEecCCchHHHHH--HHHHCCCCeEEEeec-hHHHhhccc-------CCCCeEEEeCCCCCCC---CCccEEee
Q 041250          113 EGLNSLVDVGGGTGTAAKA--IAKAFPKLECTCFDL-PHVVNGLES-------DLVNLKYVGGDMFKAI---SPAYAVLL  179 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~--l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~ri~~~~~d~~~~~---~~~D~~~~  179 (259)
                      .++.+|+|||||.|-++..  +++.+|+.+++++|. +++++.|++       ..+|++|+.+|..+..   .+||+|++
T Consensus       122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~  201 (296)
T PLN03075        122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL  201 (296)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence            3678999999998844333  345689999999999 889988887       2478999999998732   36999999


Q ss_pred             hhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250          180 KWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKD  215 (259)
Q Consensus       180 ~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e  215 (259)
                      . ++|+|+.++-.++|+++++.|+|   ||.+++--
T Consensus       202 ~-ALi~~dk~~k~~vL~~l~~~LkP---GG~Lvlr~  233 (296)
T PLN03075        202 A-ALVGMDKEEKVKVIEHLGKHMAP---GALLMLRS  233 (296)
T ss_pred             e-cccccccccHHHHHHHHHHhcCC---CcEEEEec
Confidence            9 99999877778999999999999   78776654

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.43  E-value=1.5e-12  Score=115.78  Aligned_cols=109  Identities=15%  Similarity=0.194  Sum_probs=89.2

Q ss_pred             HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----C---CCCeEEEeCCCCCCCC
Q 041250          102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----D---LVNLKYVGGDMFKAIS  172 (259)
Q Consensus       102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~---~~ri~~~~~d~~~~~~  172 (259)
                      ..+++.++  .....+|||+|||+|.++..+++++|+.+++++|. +.+++.+++     .   ..+++++..|.++..+
T Consensus       218 rllL~~lp--~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~  295 (378)
T PRK15001        218 RFFMQHLP--ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE  295 (378)
T ss_pred             HHHHHhCC--cccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCC
Confidence            45666666  33346999999999999999999999999999999 788888875     1   2489999999988543


Q ss_pred             --CccEEeehhhhcc---CChHHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250          173 --PAYAVLLKWILLD---WNDEECVKILKKCKEAITRDGKKRKVIIKD  215 (259)
Q Consensus       173 --~~D~~~~~~vlh~---~~d~~~~~il~~~~~~L~p~~~gg~lli~e  215 (259)
                        +||+|+++..+|.   ++++...++++.+++.|+|   ||.++++-
T Consensus       296 ~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~Lkp---GG~L~iV~  340 (378)
T PRK15001        296 PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKI---NGELYIVA  340 (378)
T ss_pred             CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhccc---CCEEEEEE
Confidence              5999999866653   5666778999999999999   99998874

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.41  E-value=2.8e-12  Score=102.45  Aligned_cols=109  Identities=17%  Similarity=0.257  Sum_probs=86.5

Q ss_pred             HHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCCCC--Cc
Q 041250          103 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAIS--PA  174 (259)
Q Consensus       103 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~~--~~  174 (259)
                      .+++.++  .....+|||+|||+|.++..+++++|+.+++++|+ +.+++.+++     ..+.++++..|.+++.+  .|
T Consensus        22 lL~~~l~--~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~f   99 (170)
T PF05175_consen   22 LLLDNLP--KHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKF   99 (170)
T ss_dssp             HHHHHHH--HHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCE
T ss_pred             HHHHHHh--hccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccce
Confidence            3445555  33578999999999999999999999999999999 888888876     23339999999999655  59


Q ss_pred             cEEeehhhhccCCh---HHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          175 YAVLLKWILLDWND---EECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       175 D~~~~~~vlh~~~d---~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      |+|++.--+|.-.+   +-..++++.+.+.|+|   ||+++++-.
T Consensus       100 D~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~---~G~l~lv~~  141 (170)
T PF05175_consen  100 DLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKP---GGRLFLVIN  141 (170)
T ss_dssp             EEEEE---SBTTSHCHHHHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred             eEEEEccchhcccccchhhHHHHHHHHHHhccC---CCEEEEEee
Confidence            99999988886654   3467899999999999   999976543

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PRK06202 hypothetical protein; Provisional

Probab=99.41  E-value=4.8e-12  Score=106.14  Aligned_cols=102  Identities=23%  Similarity=0.261  Sum_probs=80.0

Q ss_pred             CCCCeEEEecCCchHHHHHHHHH----CCCCeEEEeec-hHHHhhccc--CCCCeEEEeCCCCC-CCC--CccEEeehhh
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKA----FPKLECTCFDL-PHVVNGLES--DLVNLKYVGGDMFK-AIS--PAYAVLLKWI  182 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~--~~~ri~~~~~d~~~-~~~--~~D~~~~~~v  182 (259)
                      .+..+|||||||+|.++..+++.    .|+.+++++|+ +.+++.+++  ...++++...+... +.+  .||+|+++.+
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~  138 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF  138 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence            45679999999999999888763    46779999999 999998886  23456666654433 222  5999999999


Q ss_pred             hccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250          183 LLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKE  219 (259)
Q Consensus       183 lh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~  219 (259)
                      +|++++++..++|++++++++     |.+++.+...+
T Consensus       139 lhh~~d~~~~~~l~~~~r~~~-----~~~~i~dl~~~  170 (232)
T PRK06202        139 LHHLDDAEVVRLLADSAALAR-----RLVLHNDLIRS  170 (232)
T ss_pred             eecCChHHHHHHHHHHHHhcC-----eeEEEeccccC
Confidence            999999888899999999986     55666666444

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.40  E-value=1.2e-12  Score=104.74  Aligned_cols=100  Identities=14%  Similarity=0.208  Sum_probs=81.7

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEeCCCCCCCC--CccEEeehhhhcc
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFKAIS--PAYAVLLKWILLD  185 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~~~~--~~D~~~~~~vlh~  185 (259)
                      -....+++|+|||.|.++..|+.+.  -+.+++|+ +.+++.|++   ..++|+|+..|+-+..|  .||+|+++-++|+
T Consensus        41 ~~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SEVlYY  118 (201)
T PF05401_consen   41 RRRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSEVLYY  118 (201)
T ss_dssp             TSSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES-GGG
T ss_pred             ccccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEehHhHc
Confidence            4556789999999999999999986  36999999 999999987   55899999999988655  5999999999999


Q ss_pred             CCh-HHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          186 WND-EECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       186 ~~d-~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      +++ ++...+++++.++|+|   ||.+++...
T Consensus       119 L~~~~~L~~~l~~l~~~L~p---gG~LV~g~~  147 (201)
T PF05401_consen  119 LDDAEDLRAALDRLVAALAP---GGHLVFGHA  147 (201)
T ss_dssp             SSSHHHHHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHhCC---CCEEEEEEe
Confidence            986 6788899999999999   899988876

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.40  E-value=2.9e-12  Score=103.97  Aligned_cols=102  Identities=19%  Similarity=0.301  Sum_probs=82.6

Q ss_pred             HHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCCCC-CccEE
Q 041250          105 IQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAIS-PAYAV  177 (259)
Q Consensus       105 ~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~~-~~D~~  177 (259)
                      +..++  .....+|||||||+|.++..+++++|+.+++++|+ +.+++.+++     ...+++++.+|...+.+ .||++
T Consensus        24 ~~~l~--~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v  101 (187)
T PRK08287         24 LSKLE--LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADAI  101 (187)
T ss_pred             HHhcC--CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEE
Confidence            44555  56678999999999999999999999999999999 888888875     23679999999865544 59999


Q ss_pred             eehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          178 LLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       178 ~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      ++....++     ...+++++.+.|+|   ||++++...
T Consensus       102 ~~~~~~~~-----~~~~l~~~~~~Lk~---gG~lv~~~~  132 (187)
T PRK08287        102 FIGGSGGN-----LTAIIDWSLAHLHP---GGRLVLTFI  132 (187)
T ss_pred             EECCCccC-----HHHHHHHHHHhcCC---CeEEEEEEe
Confidence            98765543     24689999999999   899877553

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.39  E-value=8.2e-12  Score=111.93  Aligned_cols=111  Identities=7%  Similarity=0.063  Sum_probs=90.5

Q ss_pred             HHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc--CCCCeEEEeCCCCCCCCCccEEeeh
Q 041250          104 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES--DLVNLKYVGGDMFKAISPAYAVLLK  180 (259)
Q Consensus       104 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~ri~~~~~d~~~~~~~~D~~~~~  180 (259)
                      +++.+.  +.+..+|||||||+|.++..+++.+ +.+++++|+ +++++.+++  ....+++...|+.+....||.|+..
T Consensus       159 l~~~l~--l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~Ivs~  235 (383)
T PRK11705        159 ICRKLQ--LKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRIVSV  235 (383)
T ss_pred             HHHHhC--CCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEEEEe
Confidence            445555  5667899999999999999998876 679999999 888888876  2235888888886533469999999


Q ss_pred             hhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecC
Q 041250          181 WILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKEN  220 (259)
Q Consensus       181 ~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~  220 (259)
                      .++++.++.....+++++.++|+|   ||++++.+...+.
T Consensus       236 ~~~ehvg~~~~~~~l~~i~r~Lkp---GG~lvl~~i~~~~  272 (383)
T PRK11705        236 GMFEHVGPKNYRTYFEVVRRCLKP---DGLFLLHTIGSNK  272 (383)
T ss_pred             CchhhCChHHHHHHHHHHHHHcCC---CcEEEEEEccCCC
Confidence            999998887778899999999999   9999998765443

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.39  E-value=4.8e-12  Score=102.15  Aligned_cols=110  Identities=15%  Similarity=0.224  Sum_probs=84.7

Q ss_pred             HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCC-CCC-Cc
Q 041250          102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-AIS-PA  174 (259)
Q Consensus       102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~~~-~~  174 (259)
                      +.+++.++  ...+.++||+|||.|..+..|+++  +..++.+|. +..++.+++    ..-.|+....|+.+ .++ .+
T Consensus        20 s~v~~a~~--~~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~y   95 (192)
T PF03848_consen   20 SEVLEAVP--LLKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEY   95 (192)
T ss_dssp             HHHHHHCT--TS-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTE
T ss_pred             HHHHHHHh--hcCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCc
Confidence            44566666  555789999999999999999999  788999999 666665544    44459999999987 555 59


Q ss_pred             cEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 041250          175 YAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIK  218 (259)
Q Consensus       175 D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~  218 (259)
                      |+|+...++++.+.+...++++++.+.++|   ||.+++...+.
T Consensus        96 D~I~st~v~~fL~~~~~~~i~~~m~~~~~p---GG~~li~~~~~  136 (192)
T PF03848_consen   96 DFIVSTVVFMFLQRELRPQIIENMKAATKP---GGYNLIVTFME  136 (192)
T ss_dssp             EEEEEESSGGGS-GGGHHHHHHHHHHTEEE---EEEEEEEEEB-
T ss_pred             CEEEEEEEeccCCHHHHHHHHHHHHhhcCC---cEEEEEEEecc
Confidence            999998999999999899999999999999   88877766543

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.38  E-value=1.3e-11  Score=102.67  Aligned_cols=90  Identities=17%  Similarity=0.179  Sum_probs=76.8

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCCCCCccEEeehhhhcc
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAISPAYAVLLKWILLD  185 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~~~D~~~~~~vlh~  185 (259)
                      ....+|||+|||+|.++..+++.  +.+++++|+ ++++..|++      ...++.|..+|+.+....||+|++..++++
T Consensus        54 ~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~  131 (219)
T TIGR02021        54 LKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIH  131 (219)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHh
Confidence            34689999999999999999886  458999999 889988876      125899999999873367999999999999


Q ss_pred             CChHHHHHHHHHHHHhccc
Q 041250          186 WNDEECVKILKKCKEAITR  204 (259)
Q Consensus       186 ~~d~~~~~il~~~~~~L~p  204 (259)
                      ++++....+++++.+.+++
T Consensus       132 ~~~~~~~~~l~~i~~~~~~  150 (219)
T TIGR02021       132 YPASDMAKALGHLASLTKE  150 (219)
T ss_pred             CCHHHHHHHHHHHHHHhCC
Confidence            9887788899999998876

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.36  E-value=9.3e-12  Score=109.85  Aligned_cols=109  Identities=13%  Similarity=0.192  Sum_probs=87.1

Q ss_pred             HHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCCCCC-CccE
Q 041250          103 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFKAIS-PAYA  176 (259)
Q Consensus       103 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~~~~-~~D~  176 (259)
                      .+++.++  .....+|||+|||+|.++..+++++|+.+++++|+ +.+++.+++    ..-..+++..|.++..+ .||+
T Consensus       187 lLl~~l~--~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDl  264 (342)
T PRK09489        187 LLLSTLT--PHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDM  264 (342)
T ss_pred             HHHHhcc--ccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccE
Confidence            3455555  33345899999999999999999999999999999 788888876    22346788889887544 5999


Q ss_pred             EeehhhhccC---ChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          177 VLLKWILLDW---NDEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       177 ~~~~~vlh~~---~d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      |+++..+|+.   ..+...++++++.+.|+|   ||.++|+-.
T Consensus       265 IvsNPPFH~g~~~~~~~~~~~i~~a~~~Lkp---gG~L~iVan  304 (342)
T PRK09489        265 IISNPPFHDGIQTSLDAAQTLIRGAVRHLNS---GGELRIVAN  304 (342)
T ss_pred             EEECCCccCCccccHHHHHHHHHHHHHhcCc---CCEEEEEEe
Confidence            9999999864   345567899999999999   999977654

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.36  E-value=1.7e-11  Score=101.35  Aligned_cols=102  Identities=13%  Similarity=0.094  Sum_probs=85.3

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----------------CCCCeEEEeCCCCC-C---
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----------------DLVNLKYVGGDMFK-A---  170 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------------~~~ri~~~~~d~~~-~---  170 (259)
                      ....+|||+|||.|..+..|+++  +.+++++|+ |.+++.+.+                 ...+|+++.+|+++ +   
T Consensus        33 ~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~  110 (213)
T TIGR03840        33 PAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD  110 (213)
T ss_pred             CCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence            45679999999999999999987  778999999 777776421                 13579999999998 3   


Q ss_pred             CCCccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250          171 ISPAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKE  219 (259)
Q Consensus       171 ~~~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~  219 (259)
                      .+.||.|+-+.++|+++.+...+.++.+.++|+|   ||++++.-+..+
T Consensus       111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkp---gG~~ll~~~~~~  156 (213)
T TIGR03840       111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPP---GARQLLITLDYD  156 (213)
T ss_pred             CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCC---CCeEEEEEEEcC
Confidence            2359999999999999999989999999999999   898777766543

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.35  E-value=2.7e-11  Score=90.99  Aligned_cols=101  Identities=17%  Similarity=0.229  Sum_probs=80.0

Q ss_pred             HHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC---CC-CC
Q 041250          104 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK---AI-SP  173 (259)
Q Consensus       104 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~---~~-~~  173 (259)
                      +++.+.  .....+|+|+|||+|.++..+++++|+.+++++|. +.+++.+++     ...+++++.+|...   .. +.
T Consensus        11 ~~~~~~--~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (124)
T TIGR02469        11 TLSKLR--LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPE   88 (124)
T ss_pred             HHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCC
Confidence            445555  55567999999999999999999999999999999 788887765     34689999998764   12 36


Q ss_pred             ccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEE
Q 041250          174 AYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIK  214 (259)
Q Consensus       174 ~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~  214 (259)
                      +|++++....+     ...++++++++.|+|   ||++++.
T Consensus        89 ~D~v~~~~~~~-----~~~~~l~~~~~~Lk~---gG~li~~  121 (124)
T TIGR02469        89 PDRVFIGGSGG-----LLQEILEAIWRRLRP---GGRIVLN  121 (124)
T ss_pred             CCEEEECCcch-----hHHHHHHHHHHHcCC---CCEEEEE
Confidence            99999865433     345899999999999   8987764

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK05785 hypothetical protein; Provisional

Probab=99.33  E-value=1.3e-11  Score=103.14  Aligned_cols=96  Identities=17%  Similarity=0.169  Sum_probs=78.6

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCC-CCC--CccEEeehhhhccCChH
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK-AIS--PAYAVLLKWILLDWNDE  189 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~~--~~D~~~~~~vlh~~~d~  189 (259)
                      ...+|||||||+|.++..+++.+ +.+++++|+ ++|++.|++.   ..++.+|+.+ |++  .||+|++...+|+++|.
T Consensus        51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~---~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~  126 (226)
T PRK05785         51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA---DDKVVGSFEALPFRDKSFDVVMSSFALHASDNI  126 (226)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc---cceEEechhhCCCCCCCEEEEEecChhhccCCH
Confidence            46799999999999999999987 579999999 9999998853   3467888887 665  49999999999998875


Q ss_pred             HHHHHHHHHHHhcccCCCCcEEEEEeeeecC
Q 041250          190 ECVKILKKCKEAITRDGKKRKVIIKDMIKEN  220 (259)
Q Consensus       190 ~~~~il~~~~~~L~p~~~gg~lli~e~~~~~  220 (259)
                        .+.+++++++|+|   .  +.++|...|+
T Consensus       127 --~~~l~e~~RvLkp---~--~~ile~~~p~  150 (226)
T PRK05785        127 --EKVIAEFTRVSRK---Q--VGFIAMGKPD  150 (226)
T ss_pred             --HHHHHHHHHHhcC---c--eEEEEeCCCC
Confidence              4799999999998   3  3455654443

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.32  E-value=7.5e-12  Score=100.94  Aligned_cols=92  Identities=18%  Similarity=0.182  Sum_probs=74.8

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-CC-CCccEEeehhhhccC
Q 041250          115 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AI-SPAYAVLLKWILLDW  186 (259)
Q Consensus       115 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~~-~~~D~~~~~~vlh~~  186 (259)
                      ..+|||||||+|.++..++...|+.+++++|. +.+++.+++     ..++++++.+|+.+ +. ..||+|++.. +|++
T Consensus        43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~~~~  121 (181)
T TIGR00138        43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-LASL  121 (181)
T ss_pred             CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-hhCH
Confidence            67999999999999999999999999999999 677766654     34579999999987 32 3699988765 5443


Q ss_pred             ChHHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250          187 NDEECVKILKKCKEAITRDGKKRKVIIKD  215 (259)
Q Consensus       187 ~d~~~~~il~~~~~~L~p~~~gg~lli~e  215 (259)
                           ..+++.+++.|+|   ||++++..
T Consensus       122 -----~~~~~~~~~~Lkp---gG~lvi~~  142 (181)
T TIGR00138       122 -----NVLLELTLNLLKV---GGYFLAYK  142 (181)
T ss_pred             -----HHHHHHHHHhcCC---CCEEEEEc
Confidence                 3578888999999   89988764

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.31  E-value=2.3e-11  Score=103.49  Aligned_cols=111  Identities=12%  Similarity=0.167  Sum_probs=91.5

Q ss_pred             hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCCCC-C
Q 041250          101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAIS-P  173 (259)
Q Consensus       101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~~-~  173 (259)
                      .+-+++.++  .....+|+|+|||.|.+++.+++.+|+.+++.+|. ..+++.+++     ..++..+...|.+++.. +
T Consensus       147 S~lLl~~l~--~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~k  224 (300)
T COG2813         147 SRLLLETLP--PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGK  224 (300)
T ss_pred             HHHHHHhCC--ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccccccc
Confidence            356777887  44444999999999999999999999999999999 788888887     33444778889988655 6


Q ss_pred             ccEEeehhhhccCC---hHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          174 AYAVLLKWILLDWN---DEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       174 ~D~~~~~~vlh~~~---d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      ||.|+++--+|.--   ..-..+|++.+++.|++   ||.|.|+-.
T Consensus       225 fd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~---gGeL~iVan  267 (300)
T COG2813         225 FDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKP---GGELWIVAN  267 (300)
T ss_pred             ccEEEeCCCccCCcchhHHHHHHHHHHHHHhhcc---CCEEEEEEc
Confidence            99999999999643   34456899999999999   999988765

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.31  E-value=1.8e-11  Score=99.09  Aligned_cols=95  Identities=20%  Similarity=0.238  Sum_probs=78.5

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-CCC-CccEEeehhhhc
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AIS-PAYAVLLKWILL  184 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~~~-~~D~~~~~~vlh  184 (259)
                      +...+|||+|||+|..+..++++.|+.+++++|. +.+++.+++     ..++++++.+|..+ +.. +||+|+++.+  
T Consensus        44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~--  121 (187)
T PRK00107         44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAV--  121 (187)
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccc--
Confidence            3468999999999999999999999999999999 888887776     34569999999987 333 5999998752  


Q ss_pred             cCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          185 DWNDEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       185 ~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                        .  ....+++.+++.|+|   ||++++.+.
T Consensus       122 --~--~~~~~l~~~~~~Lkp---GG~lv~~~~  146 (187)
T PRK00107        122 --A--SLSDLVELCLPLLKP---GGRFLALKG  146 (187)
T ss_pred             --c--CHHHHHHHHHHhcCC---CeEEEEEeC
Confidence              1  235789999999999   999998864

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=99.29  E-value=9.3e-11  Score=94.94  Aligned_cols=150  Identities=14%  Similarity=0.109  Sum_probs=109.0

Q ss_pred             HHHHhcccccCCCC-eEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeE-EEeCCCCCC---C
Q 041250          103 VMIQKCKNVFEGLN-SLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLK-YVGGDMFKA---I  171 (259)
Q Consensus       103 ~~~~~~~~~~~~~~-~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~-~~~~d~~~~---~  171 (259)
                      .|++.+...++... +||+||+|+|..+..+++.+|+++..--|. +......+.     ..+++. -+..|..++   +
T Consensus        13 pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~   92 (204)
T PF06080_consen   13 PILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPW   92 (204)
T ss_pred             HHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCcc
Confidence            34444443344444 599999999999999999999999888787 333222221     222332 133444442   2


Q ss_pred             C--------CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhcc-
Q 041250          172 S--------PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLL-  242 (259)
Q Consensus       172 ~--------~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~-  242 (259)
                      +        .+|+|++.+++|..+.+.+..+++.+.+.|+|   ||.|++.-++..+....+   +....||-..-... 
T Consensus        93 ~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~---gG~L~~YGPF~~~G~~ts---~SN~~FD~sLr~rdp  166 (204)
T PF06080_consen   93 ELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKP---GGLLFLYGPFNRDGKFTS---ESNAAFDASLRSRDP  166 (204)
T ss_pred             ccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCC---CCEEEEeCCcccCCEeCC---cHHHHHHHHHhcCCC
Confidence            1        48999999999999999999999999999999   999999999887765432   33467887776654 


Q ss_pred             CccccCHHHHHHHHhc
Q 041250          243 TGTERDEKEWAKIFAD  258 (259)
Q Consensus       243 ~g~~rt~~e~~~ll~~  258 (259)
                      ....|..++..++.++
T Consensus       167 ~~GiRD~e~v~~lA~~  182 (204)
T PF06080_consen  167 EWGIRDIEDVEALAAA  182 (204)
T ss_pred             CcCccCHHHHHHHHHH
Confidence            6788999998888764

The function of this family is unknown.

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.29  E-value=3.8e-11  Score=96.70  Aligned_cols=102  Identities=21%  Similarity=0.241  Sum_probs=82.6

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCCC-CCCccEEeehhhhccC
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFKA-ISPAYAVLLKWILLDW  186 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~~-~~~~D~~~~~~vlh~~  186 (259)
                      .+..+|||+|||+|.++..+++..+  +++++|+ |.+++.+++    ...+++++.+|.++. .+.||+|+++..+|..
T Consensus        18 ~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~   95 (179)
T TIGR00537        18 LKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLPL   95 (179)
T ss_pred             cCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCCC
Confidence            3457899999999999999999876  8999999 888888776    334688999999873 3369999999887766


Q ss_pred             ChH-------------------HHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250          187 NDE-------------------ECVKILKKCKEAITRDGKKRKVIIKDMIKE  219 (259)
Q Consensus       187 ~d~-------------------~~~~il~~~~~~L~p~~~gg~lli~e~~~~  219 (259)
                      ++.                   ...++++++.+.|+|   ||++++++....
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~---gG~~~~~~~~~~  144 (179)
T TIGR00537        96 EDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKE---GGRVQLIQSSLN  144 (179)
T ss_pred             cchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCC---CCEEEEEEeccC
Confidence            532                   135689999999999   999999886544

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>TIGR03438 probable methyltransferase

Probab=99.27  E-value=3.6e-11  Score=104.67  Aligned_cols=99  Identities=12%  Similarity=0.238  Sum_probs=80.1

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCC--CC-Cc-----cE
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKA--IS-PA-----YA  176 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~--~~-~~-----D~  176 (259)
                      +...+|||+|||+|..+..++++.+ ..+++++|+ +++++.+++      ...+|.++.+|+.+.  ++ .+     .+
T Consensus        62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~  141 (301)
T TIGR03438        62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLG  141 (301)
T ss_pred             CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEE
Confidence            3457899999999999999999987 588999999 788877765      124577789999873  33 22     35


Q ss_pred             EeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEE
Q 041250          177 VLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIK  214 (259)
Q Consensus       177 ~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~  214 (259)
                      +++...+|+++++++..+|++++++|+|   ||.++|.
T Consensus       142 ~~~gs~~~~~~~~e~~~~L~~i~~~L~p---gG~~lig  176 (301)
T TIGR03438       142 FFPGSTIGNFTPEEAVAFLRRIRQLLGP---GGGLLIG  176 (301)
T ss_pred             EEecccccCCCHHHHHHHHHHHHHhcCC---CCEEEEe
Confidence            5566899999999999999999999999   8887763

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.27  E-value=1.5e-11  Score=101.89  Aligned_cols=96  Identities=19%  Similarity=0.179  Sum_probs=81.9

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-------CCC----CeEEEeCCCCCCCCCccEEeehhh
Q 041250          115 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-------DLV----NLKYVGGDMFKAISPAYAVLLKWI  182 (259)
Q Consensus       115 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~----ri~~~~~d~~~~~~~~D~~~~~~v  182 (259)
                      ..+|||||||.|.++..|++.  +.+++++|. +.+++.|++       ...    |+++.+.|.....+.||+|+++.+
T Consensus        90 g~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsev  167 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEV  167 (282)
T ss_pred             CceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHH
Confidence            367999999999999999998  578999999 888888886       122    578888888775556999999999


Q ss_pred             hccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250          183 LLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI  217 (259)
Q Consensus       183 lh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~  217 (259)
                      ++|..|.  ..+++.+.+.|+|   +|+++|....
T Consensus       168 leHV~dp--~~~l~~l~~~lkP---~G~lfittin  197 (282)
T KOG1270|consen  168 LEHVKDP--QEFLNCLSALLKP---NGRLFITTIN  197 (282)
T ss_pred             HHHHhCH--HHHHHHHHHHhCC---CCceEeeehh
Confidence            9999774  4799999999999   9999998764

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.26  E-value=1.3e-10  Score=96.36  Aligned_cols=113  Identities=11%  Similarity=0.063  Sum_probs=88.2

Q ss_pred             HHHHHhccc-ccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----------------CCCCeEE
Q 041250          102 SVMIQKCKN-VFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----------------DLVNLKY  162 (259)
Q Consensus       102 ~~~~~~~~~-~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------------~~~ri~~  162 (259)
                      +.+.+.++. ......+|||+|||.|..+..|+++  +.+++++|+ +.+++.+.+                 ...+|++
T Consensus        24 ~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~  101 (218)
T PRK13255         24 PLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITI  101 (218)
T ss_pred             HHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEE
Confidence            444444431 1345579999999999999999986  789999999 777776521                 2468999


Q ss_pred             EeCCCCCCC----CCccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250          163 VGGDMFKAI----SPAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKE  219 (259)
Q Consensus       163 ~~~d~~~~~----~~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~  219 (259)
                      ..+|+++..    +.||.|+-+.++|+++.+...+.++.+.+.|+|   ||+++++....+
T Consensus       102 ~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~p---gG~~~l~~~~~~  159 (218)
T PRK13255        102 YCGDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPA---GCRGLLVTLDYP  159 (218)
T ss_pred             EECcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCC---CCeEEEEEEEeC
Confidence            999999832    358999999999999999999999999999999   887555444433

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.25  E-value=2.6e-11  Score=99.60  Aligned_cols=99  Identities=15%  Similarity=0.108  Sum_probs=78.2

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCC-CC-C--CC--CccEEeehh
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDM-FK-A--IS--PAYAVLLKW  181 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~-~~-~--~~--~~D~~~~~~  181 (259)
                      ...+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++     ...+++++.+|+ .. +  .+  .+|++++.+
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~  119 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF  119 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence            467899999999999999999999999999999 888888775     337899999999 33 3  43  499998865


Q ss_pred             hhccCC------hHHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250          182 ILLDWN------DEECVKILKKCKEAITRDGKKRKVIIKD  215 (259)
Q Consensus       182 vlh~~~------d~~~~~il~~~~~~L~p~~~gg~lli~e  215 (259)
                      ..+...      ......++++++++|+|   ||.+++..
T Consensus       120 ~~p~~~~~~~~~~~~~~~~l~~i~~~Lkp---gG~l~i~~  156 (202)
T PRK00121        120 PDPWPKKRHHKRRLVQPEFLALYARKLKP---GGEIHFAT  156 (202)
T ss_pred             CCCCCCccccccccCCHHHHHHHHHHcCC---CCEEEEEc
Confidence            432111      11235789999999999   99998865

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.23  E-value=2.5e-11  Score=99.84  Aligned_cols=97  Identities=19%  Similarity=0.202  Sum_probs=79.7

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCC-CC--CCccEEeehhhhcc
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-AI--SPAYAVLLKWILLD  185 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~~--~~~D~~~~~~vlh~  185 (259)
                      ...+|||||||-|.++..+++.  +.+++++|+ +..|+.|+.    ..-.+.+.+....+ ..  .+||+|++..+++|
T Consensus        59 ~g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH  136 (243)
T COG2227          59 PGLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH  136 (243)
T ss_pred             CCCeEEEecCCccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence            4578999999999999999999  489999999 888888875    33345566665555 22  36999999999999


Q ss_pred             CChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250          186 WNDEECVKILKKCKEAITRDGKKRKVIIKDMI  217 (259)
Q Consensus       186 ~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~  217 (259)
                      .+|.+  .+++++.+.++|   ||.+++....
T Consensus       137 v~dp~--~~~~~c~~lvkP---~G~lf~STin  163 (243)
T COG2227         137 VPDPE--SFLRACAKLVKP---GGILFLSTIN  163 (243)
T ss_pred             cCCHH--HHHHHHHHHcCC---CcEEEEeccc
Confidence            99976  599999999999   8888777654

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.23  E-value=1.3e-10  Score=96.96  Aligned_cols=90  Identities=17%  Similarity=0.236  Sum_probs=74.8

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCCCCCccEEeehhhhcc
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAISPAYAVLLKWILLD  185 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~~~D~~~~~~vlh~  185 (259)
                      .+..+|||||||+|.++..+++..  .+++++|+ +.+++.|++      ..+++.+..+|+......||++++..++|+
T Consensus        62 ~~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~  139 (230)
T PRK07580         62 LTGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIH  139 (230)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhc
Confidence            446799999999999999999875  46999999 888888876      225899999995333346999999999999


Q ss_pred             CChHHHHHHHHHHHHhccc
Q 041250          186 WNDEECVKILKKCKEAITR  204 (259)
Q Consensus       186 ~~d~~~~~il~~~~~~L~p  204 (259)
                      ++++....+++++.+.+++
T Consensus       140 ~~~~~~~~~l~~l~~~~~~  158 (230)
T PRK07580        140 YPQEDAARMLAHLASLTRG  158 (230)
T ss_pred             CCHHHHHHHHHHHHhhcCC
Confidence            9998888999999987653

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.20  E-value=1.2e-10  Score=101.58  Aligned_cols=93  Identities=18%  Similarity=0.227  Sum_probs=74.5

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccC----------CCCeEEEeCCCCCCCCCccEEeehhh
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESD----------LVNLKYVGGDMFKAISPAYAVLLKWI  182 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~ri~~~~~d~~~~~~~~D~~~~~~v  182 (259)
                      +..+|||||||+|.++..+++.  +.+++++|+ +.+++.+++.          ..+++|..+|+.+....||+|++..+
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~v  221 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDV  221 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCE
Confidence            3579999999999999999986  568999999 8898887761          24688999997653346999999999


Q ss_pred             hccCChHHHHHHHHHHHHhcccCCCCcEEEE
Q 041250          183 LLDWNDEECVKILKKCKEAITRDGKKRKVII  213 (259)
Q Consensus       183 lh~~~d~~~~~il~~~~~~L~p~~~gg~lli  213 (259)
                      +|+++++....+++++.+ +.+    |+++|
T Consensus       222 L~H~p~~~~~~ll~~l~~-l~~----g~liI  247 (315)
T PLN02585        222 LIHYPQDKADGMIAHLAS-LAE----KRLII  247 (315)
T ss_pred             EEecCHHHHHHHHHHHHh-hcC----CEEEE
Confidence            999998877788888875 444    45554

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.19  E-value=2.4e-10  Score=94.06  Aligned_cols=98  Identities=13%  Similarity=0.109  Sum_probs=76.5

Q ss_pred             HHHhcccccCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCCCC---
Q 041250          104 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAIS---  172 (259)
Q Consensus       104 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~---  172 (259)
                      +++.++  ..+..+|||||||+|..+..+++..+ ..+++++|+ +++++.+++      ...+++++.+|..+..+   
T Consensus        64 ~~~~l~--~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~  141 (205)
T PRK13944         64 MCELIE--PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHA  141 (205)
T ss_pred             HHHhcC--CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCC
Confidence            344444  55668999999999999999998764 568999999 888887775      23579999999987332   


Q ss_pred             CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEE
Q 041250          173 PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIK  214 (259)
Q Consensus       173 ~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~  214 (259)
                      .||+|++...++..+        +++.+.|+|   ||+|++.
T Consensus       142 ~fD~Ii~~~~~~~~~--------~~l~~~L~~---gG~lvi~  172 (205)
T PRK13944        142 PFDAIIVTAAASTIP--------SALVRQLKD---GGVLVIP  172 (205)
T ss_pred             CccEEEEccCcchhh--------HHHHHhcCc---CcEEEEE
Confidence            599999998876554        356788999   9998774

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.19  E-value=2.1e-10  Score=99.02  Aligned_cols=99  Identities=18%  Similarity=0.272  Sum_probs=77.8

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCCCC--CccEEeehh---
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAIS--PAYAVLLKW---  181 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~--~~D~~~~~~---  181 (259)
                      +..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.|++      ..++++++.+|++++.+  .||+|++.-   
T Consensus       121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~  200 (284)
T TIGR03533       121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYV  200 (284)
T ss_pred             CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCC
Confidence            356899999999999999999999999999999 888888876      23689999999988554  599999752   


Q ss_pred             ----------hhccCCh----------HHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          182 ----------ILLDWND----------EECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       182 ----------vlh~~~d----------~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                                .+++.+.          +...++++++.+.|+|   ||+++ +|.
T Consensus       201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~---gG~l~-~e~  251 (284)
T TIGR03533       201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNE---NGVLV-VEV  251 (284)
T ss_pred             CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCC---CCEEE-EEE
Confidence                      1121221          2236789999999999   88765 554

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.18  E-value=1.4e-10  Score=94.61  Aligned_cols=98  Identities=18%  Similarity=0.268  Sum_probs=76.9

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-C---CC--CccEEeehh
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-A---IS--PAYAVLLKW  181 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~---~~--~~D~~~~~~  181 (259)
                      ...++||||||+|.++..+++++|+.+++++|+ +.+++.+++     ...+++++.+|+.+ +   .+  .+|.+++..
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~   95 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF   95 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence            356899999999999999999999999999999 778877765     34689999999975 2   33  478887765


Q ss_pred             hhccCChHH-------HHHHHHHHHHhcccCCCCcEEEEEe
Q 041250          182 ILLDWNDEE-------CVKILKKCKEAITRDGKKRKVIIKD  215 (259)
Q Consensus       182 vlh~~~d~~-------~~~il~~~~~~L~p~~~gg~lli~e  215 (259)
                      ..+ |+...       ...++++++++|+|   ||.|++..
T Consensus        96 pdp-w~k~~h~~~r~~~~~~l~~~~r~Lkp---gG~l~~~t  132 (194)
T TIGR00091        96 PDP-WPKKRHNKRRITQPHFLKEYANVLKK---GGVIHFKT  132 (194)
T ss_pred             CCc-CCCCCccccccCCHHHHHHHHHHhCC---CCEEEEEe
Confidence            332 33221       14689999999999   99987765

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.17  E-value=4.7e-10  Score=93.99  Aligned_cols=97  Identities=15%  Similarity=0.159  Sum_probs=77.9

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCC-C--C-CCccEEeehhhh
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-A--I-SPAYAVLLKWIL  183 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~--~-~~~D~~~~~~vl  183 (259)
                      .+..+|||||||+|.++..+++.  ..+++++|. +.++..+++    ...++++...|+.+ +  . ..||+|++.+++
T Consensus        47 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l  124 (233)
T PRK05134         47 LFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML  124 (233)
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence            34678999999999999998876  467999998 777777765    23467888888765 2  2 259999999999


Q ss_pred             ccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          184 LDWNDEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       184 h~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      ++.++.  ..+|+++.+.|+|   ||.+++...
T Consensus       125 ~~~~~~--~~~l~~~~~~L~~---gG~l~v~~~  152 (233)
T PRK05134        125 EHVPDP--ASFVRACAKLVKP---GGLVFFSTL  152 (233)
T ss_pred             hccCCH--HHHHHHHHHHcCC---CcEEEEEec
Confidence            988774  4789999999999   899887754

>PRK04266 fibrillarin; Provisional

Probab=99.17  E-value=3.2e-10  Score=94.46  Aligned_cols=95  Identities=9%  Similarity=0.135  Sum_probs=73.9

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEeCCCCCC-----CC-CccEEeehh
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFKA-----IS-PAYAVLLKW  181 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~~-----~~-~~D~~~~~~  181 (259)
                      +.+..+|||+|||+|.++..+++..+..+++++|+ +.+++.+.+   ...++.++.+|...+     .+ .+|+++   
T Consensus        70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~---  146 (226)
T PRK04266         70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIY---  146 (226)
T ss_pred             CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEE---
Confidence            66778999999999999999999988778999999 777664432   236899999998753     12 488887   


Q ss_pred             hhccCChH-HHHHHHHHHHHhcccCCCCcEEEEE
Q 041250          182 ILLDWNDE-ECVKILKKCKEAITRDGKKRKVIIK  214 (259)
Q Consensus       182 vlh~~~d~-~~~~il~~~~~~L~p~~~gg~lli~  214 (259)
                        |+.++. ....+|+++++.|+|   ||+++|.
T Consensus       147 --~d~~~p~~~~~~L~~~~r~LKp---GG~lvI~  175 (226)
T PRK04266        147 --QDVAQPNQAEIAIDNAEFFLKD---GGYLLLA  175 (226)
T ss_pred             --ECCCChhHHHHHHHHHHHhcCC---CcEEEEE
Confidence              444432 334578999999999   9999994

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=99.17  E-value=9.8e-11  Score=95.89  Aligned_cols=173  Identities=14%  Similarity=0.190  Sum_probs=121.0

Q ss_pred             CchHHHHHHHHHHhcchhhhHHHHHhcccc--cCC--CCeEEEecCCchHHHHHHHHHCCC--CeEEEeec-hHHHhhcc
Q 041250           82 ESKLNNFFNEAMASDARLATSVMIQKCKNV--FEG--LNSLVDVGGGTGTAAKAIAKAFPK--LECTCFDL-PHVVNGLE  154 (259)
Q Consensus        82 ~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~--~~~--~~~vlDvGgG~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~  154 (259)
                      .+..++.|...-....-..-.++.+.++..  ...  ..+|++||||.|....-+++.+|+  +++..+|. |.+++..+
T Consensus        35 ~~k~wD~fy~~~~~rFfkdR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk  114 (264)
T KOG2361|consen   35 ASKYWDTFYKIHENRFFKDRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVK  114 (264)
T ss_pred             hhhhhhhhhhhccccccchhHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHH
Confidence            344555565543332111123344444432  222  238999999999999999999888  99999998 99998887


Q ss_pred             c----CCCCeEEEeCCCCCC-----CC--CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCC
Q 041250          155 S----DLVNLKYVGGDMFKA-----IS--PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKK  223 (259)
Q Consensus       155 ~----~~~ri~~~~~d~~~~-----~~--~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~  223 (259)
                      +    ...|+.-...|+..+     ..  ..|++++-.+|.-.++++....++++++.|+|   ||.|++.|+...+-..
T Consensus       115 ~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKP---GG~llfrDYg~~Dlaq  191 (264)
T KOG2361|consen  115 KSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKP---GGSLLFRDYGRYDLAQ  191 (264)
T ss_pred             hccccchhhhcccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCC---CcEEEEeecccchHHH
Confidence            7    456777777777662     11  48999999999999999999999999999999   9999999987665322


Q ss_pred             CchhhhhhhhhhhhhhhccCc---cccCHHHHHHHHhcC
Q 041250          224 DYKSIETQLFFEMFMMVLLTG---TERDEKEWAKIFADS  259 (259)
Q Consensus       224 ~~~~~~~~~~~d~~m~~~~~g---~~rt~~e~~~ll~~a  259 (259)
                      .. + .....++-+..+...|   ...+.++..+||++|
T Consensus       192 lR-F-~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~a  228 (264)
T KOG2361|consen  192 LR-F-KKGQCISENFYVRGDGTRAYFFTEEELDELFTKA  228 (264)
T ss_pred             Hh-c-cCCceeecceEEccCCceeeeccHHHHHHHHHhc
Confidence            11 0 1123444444444333   457899999998875

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.15  E-value=5.5e-10  Score=88.77  Aligned_cols=102  Identities=21%  Similarity=0.245  Sum_probs=83.9

Q ss_pred             HHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCC---CCCcc
Q 041250          105 IQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKA---ISPAY  175 (259)
Q Consensus       105 ~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~---~~~~D  175 (259)
                      +..+.  ..+..+++|||||+|..+++++...|..+++.+|. +++++..++     ..++++++.+|.-+.   .+.+|
T Consensus        27 ls~L~--~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~d  104 (187)
T COG2242          27 LSKLR--PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPD  104 (187)
T ss_pred             HHhhC--CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCC
Confidence            44555  67788999999999999999999999999999998 777777665     679999999999873   34699


Q ss_pred             EEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250          176 AVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI  217 (259)
Q Consensus       176 ~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~  217 (259)
                      .+++.-.      .....+|+.+...|+|   ||+|++.-..
T Consensus       105 aiFIGGg------~~i~~ile~~~~~l~~---ggrlV~nait  137 (187)
T COG2242         105 AIFIGGG------GNIEEILEAAWERLKP---GGRLVANAIT  137 (187)
T ss_pred             EEEECCC------CCHHHHHHHHHHHcCc---CCeEEEEeec
Confidence            9999865      2245799999999999   8987766543

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=99.15  E-value=9e-10  Score=91.35  Aligned_cols=122  Identities=7%  Similarity=0.038  Sum_probs=96.5

Q ss_pred             hHHHHHhcccc-cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----------------CCCCeE
Q 041250          101 TSVMIQKCKNV-FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----------------DLVNLK  161 (259)
Q Consensus       101 ~~~~~~~~~~~-~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------------~~~ri~  161 (259)
                      .+.+.+.+... ..+..+|++.|||.|.-+..|++.  +.+++++|+ +.+++.+.+                 ...+|+
T Consensus        29 np~L~~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~  106 (226)
T PRK13256         29 NEFLVKHFSKLNINDSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIE  106 (226)
T ss_pred             CHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceE
Confidence            45555555532 344579999999999999999998  678999999 777776422                 356899


Q ss_pred             EEeCCCCC-CC-----CCccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchh
Q 041250          162 YVGGDMFK-AI-----SPAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKS  227 (259)
Q Consensus       162 ~~~~d~~~-~~-----~~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~  227 (259)
                      +.++|+|+ +.     ..||+|+-+.+|+.++++...+..+.+.+.|+|   ||+++++....+....+||+
T Consensus       107 ~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~p---gg~llll~~~~~~~~~GPPf  175 (226)
T PRK13256        107 IYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSN---NTQILLLVMEHDKKSQTPPY  175 (226)
T ss_pred             EEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCC---CcEEEEEEEecCCCCCCCCC
Confidence            99999998 32     259999999999999999999999999999999   89998887755443345544

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.15  E-value=1.4e-10  Score=99.59  Aligned_cols=91  Identities=14%  Similarity=0.218  Sum_probs=74.8

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCC---eEEEeec-hHHHhhcccCCCCeEEEeCCCCC-CCC--CccEEeehhhhccC
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAFPKL---ECTCFDL-PHVVNGLESDLVNLKYVGGDMFK-AIS--PAYAVLLKWILLDW  186 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~p~~---~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~~--~~D~~~~~~vlh~~  186 (259)
                      ...+|||+|||+|.++..+++..|..   +++++|+ +.+++.|++..+++.|..+|..+ |++  .||+|+....    
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~----  160 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA----  160 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC----
Confidence            45789999999999999999988753   6899999 88999888766789999999887 665  4999986532    


Q ss_pred             ChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          187 NDEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       187 ~d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      +     ..+++++++|+|   ||+++++.+
T Consensus       161 ~-----~~~~e~~rvLkp---gG~li~~~p  182 (272)
T PRK11088        161 P-----CKAEELARVVKP---GGIVITVTP  182 (272)
T ss_pred             C-----CCHHHHHhhccC---CCEEEEEeC
Confidence            1     236789999999   999998754

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.15  E-value=4e-10  Score=95.27  Aligned_cols=98  Identities=19%  Similarity=0.305  Sum_probs=77.0

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCCCC--CccEEeehhhh--
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAIS--PAYAVLLKWIL--  183 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~~--~~D~~~~~~vl--  183 (259)
                      +..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++     ..++++++.+|++++.+  .||+|++....  
T Consensus        87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~  166 (251)
T TIGR03534        87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPPYIP  166 (251)
T ss_pred             CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECCCCCc
Confidence            346899999999999999999999999999998 888888775     34579999999988554  59999875332  


Q ss_pred             ----ccCChHH------------------HHHHHHHHHHhcccCCCCcEEEEE
Q 041250          184 ----LDWNDEE------------------CVKILKKCKEAITRDGKKRKVIIK  214 (259)
Q Consensus       184 ----h~~~d~~------------------~~~il~~~~~~L~p~~~gg~lli~  214 (259)
                          |.+..+.                  ...+++++.+.|+|   ||.+++.
T Consensus       167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~---gG~~~~~  216 (251)
T TIGR03534       167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKP---GGWLLLE  216 (251)
T ss_pred             hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhccc---CCEEEEE
Confidence                2222211                  24789999999999   8887764

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.14  E-value=5.8e-10  Score=92.28  Aligned_cols=99  Identities=15%  Similarity=0.193  Sum_probs=77.6

Q ss_pred             HHHHhcccccCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCCC---C
Q 041250          103 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAI---S  172 (259)
Q Consensus       103 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~---~  172 (259)
                      .+++.++  .....+|||||||+|.++..+++.. ++.+++++|+ +++++.+++     ...+++++.+|..+.+   .
T Consensus        67 ~~~~~l~--~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~  144 (212)
T PRK13942         67 IMCELLD--LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENA  144 (212)
T ss_pred             HHHHHcC--CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCC
Confidence            3455555  6677899999999999999998875 4579999999 888888876     3468999999998733   2


Q ss_pred             CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEE
Q 041250          173 PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIK  214 (259)
Q Consensus       173 ~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~  214 (259)
                      .||+|++....+..+        +.+.+.|+|   ||++++.
T Consensus       145 ~fD~I~~~~~~~~~~--------~~l~~~Lkp---gG~lvi~  175 (212)
T PRK13942        145 PYDRIYVTAAGPDIP--------KPLIEQLKD---GGIMVIP  175 (212)
T ss_pred             CcCEEEECCCcccch--------HHHHHhhCC---CcEEEEE
Confidence            599999887665443        356678999   9998775

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.14  E-value=3.7e-10  Score=98.40  Aligned_cols=97  Identities=20%  Similarity=0.289  Sum_probs=77.3

Q ss_pred             CeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCCCC--CccEEeehh-----
Q 041250          116 NSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAIS--PAYAVLLKW-----  181 (259)
Q Consensus       116 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~--~~D~~~~~~-----  181 (259)
                      .+|||+|||+|.++..+++.+|+.+++++|+ +.+++.|++      ..++++++.+|+++..+  .||+|++.-     
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~  214 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVDA  214 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCCc
Confidence            6899999999999999999999999999999 888988876      24689999999988554  599999752     


Q ss_pred             --------hhccCCh----------HHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          182 --------ILLDWND----------EECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       182 --------vlh~~~d----------~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                              .+++.|.          +...++++++.+.|+|   ||++++ |.
T Consensus       215 ~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~p---gG~l~~-E~  263 (307)
T PRK11805        215 EDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTE---DGVLVV-EV  263 (307)
T ss_pred             cchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCC---CCEEEE-EE
Confidence                    1122221          2346889999999999   887665 54

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=99.12  E-value=2.4e-10  Score=93.10  Aligned_cols=129  Identities=16%  Similarity=0.282  Sum_probs=93.6

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-C---CCC-eEEEeCCCCC--CCC-CccEEeehhhhc
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-D---LVN-LKYVGGDMFK--AIS-PAYAVLLKWILL  184 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~---~~r-i~~~~~d~~~--~~~-~~D~~~~~~vlh  184 (259)
                      +..+.||+|+|.|..+..++..+= -++-++|. +..++.|++ .   ..+ .++.+.-+.+  |.+ .||+|++.|++-
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~f-~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg  133 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPVF-DEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG  133 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred             CcceEEecccccchhHHHHHHHhc-CEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence            467999999999999998765431 15777776 888888886 1   123 4455554444  444 599999999999


Q ss_pred             cCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccCHHHHHHHHhcC
Q 041250          185 DWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAKIFADS  259 (259)
Q Consensus       185 ~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~e~~~ll~~a  259 (259)
                      +++|++.+.+|++++++|+|   +|.|+|-|.+...+..         .+|-    ..++-.|+.+.|+++|++|
T Consensus       134 hLTD~dlv~fL~RCk~~L~~---~G~IvvKEN~~~~~~~---------~~D~----~DsSvTRs~~~~~~lF~~A  192 (218)
T PF05891_consen  134 HLTDEDLVAFLKRCKQALKP---NGVIVVKENVSSSGFD---------EFDE----EDSSVTRSDEHFRELFKQA  192 (218)
T ss_dssp             GS-HHHHHHHHHHHHHHEEE---EEEEEEEEEEESSSEE---------EEET----TTTEEEEEHHHHHHHHHHC
T ss_pred             cCCHHHHHHHHHHHHHhCcC---CcEEEEEecCCCCCCc---------ccCC----ccCeeecCHHHHHHHHHHc
Confidence            99999999999999999999   9999999998765421         1222    2467779999999999986

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.12  E-value=6e-10  Score=91.04  Aligned_cols=103  Identities=18%  Similarity=0.247  Sum_probs=79.5

Q ss_pred             HHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC---CC-CC
Q 041250          104 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK---AI-SP  173 (259)
Q Consensus       104 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~---~~-~~  173 (259)
                      +++.++  .....+|||+|||+|.++..+++..|+.+++++|+ |.+++.+++     ...+++++.+|..+   .. +.
T Consensus        32 l~~~l~--~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~  109 (196)
T PRK07402         32 LISQLR--LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPA  109 (196)
T ss_pred             HHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCC
Confidence            455555  56678999999999999999999899999999999 888888775     33689999999865   22 23


Q ss_pred             ccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250          174 AYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI  217 (259)
Q Consensus       174 ~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~  217 (259)
                      +|.+++.     . ......+++++.+.|+|   ||++++....
T Consensus       110 ~d~v~~~-----~-~~~~~~~l~~~~~~Lkp---gG~li~~~~~  144 (196)
T PRK07402        110 PDRVCIE-----G-GRPIKEILQAVWQYLKP---GGRLVATASS  144 (196)
T ss_pred             CCEEEEE-----C-CcCHHHHHHHHHHhcCC---CeEEEEEeec
Confidence            5665442     1 12346889999999999   8998888653

>PRK04457 spermidine synthase; Provisional

Probab=99.12  E-value=3.1e-10  Score=96.84  Aligned_cols=98  Identities=15%  Similarity=0.258  Sum_probs=78.5

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC---CCC-CccEEeehh
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK---AIS-PAYAVLLKW  181 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~---~~~-~~D~~~~~~  181 (259)
                      +.+.+|||||||+|.++..+++.+|+.+++++|+ |++++.|++      ..+|++++.+|..+   ..+ +||+|++..
T Consensus        65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~  144 (262)
T PRK04457         65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG  144 (262)
T ss_pred             CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence            3467899999999999999999999999999999 999999887      24799999999865   233 599998753


Q ss_pred             hhcc--CChH-HHHHHHHHHHHhcccCCCCcEEEEE
Q 041250          182 ILLD--WNDE-ECVKILKKCKEAITRDGKKRKVIIK  214 (259)
Q Consensus       182 vlh~--~~d~-~~~~il~~~~~~L~p~~~gg~lli~  214 (259)
                       ++.  .+.. ....+++++++.|+|   ||.++++
T Consensus       145 -~~~~~~~~~l~t~efl~~~~~~L~p---gGvlvin  176 (262)
T PRK04457        145 -FDGEGIIDALCTQPFFDDCRNALSS---DGIFVVN  176 (262)
T ss_pred             -CCCCCCccccCcHHHHHHHHHhcCC---CcEEEEE
Confidence             221  2211 125899999999999   8988775

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.12  E-value=8e-10  Score=91.61  Aligned_cols=99  Identities=14%  Similarity=0.184  Sum_probs=77.3

Q ss_pred             HHHHhcccccCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCCC---C
Q 041250          103 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAI---S  172 (259)
Q Consensus       103 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~---~  172 (259)
                      .+++.++  .....+|||||||+|.++..+++..+ +.+++++|+ +++++.|++     ..++++++.+|..+..   .
T Consensus        68 ~~~~~l~--~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~  145 (215)
T TIGR00080        68 MMTELLE--LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLA  145 (215)
T ss_pred             HHHHHhC--CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccC
Confidence            3445555  66778999999999999999999864 578999998 888888876     3478999999998732   2


Q ss_pred             CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEE
Q 041250          173 PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIK  214 (259)
Q Consensus       173 ~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~  214 (259)
                      .||+|++....+.        +.+.+.+.|+|   ||++++.
T Consensus       146 ~fD~Ii~~~~~~~--------~~~~~~~~L~~---gG~lv~~  176 (215)
T TIGR00080       146 PYDRIYVTAAGPK--------IPEALIDQLKE---GGILVMP  176 (215)
T ss_pred             CCCEEEEcCCccc--------ccHHHHHhcCc---CcEEEEE
Confidence            5999998765543        34557788999   9998774

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.11  E-value=1.2e-09  Score=94.49  Aligned_cols=98  Identities=15%  Similarity=0.249  Sum_probs=77.3

Q ss_pred             CeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCCCC--CccEEeehh-----
Q 041250          116 NSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAIS--PAYAVLLKW-----  181 (259)
Q Consensus       116 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~--~~D~~~~~~-----  181 (259)
                      .+|||+|||+|.++..+++.+|+.+++++|+ +.+++.|++      ...+++++.+|++++.+  +||+|++..     
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~  195 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDE  195 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCc
Confidence            6899999999999999999999999999999 888888876      23569999999998654  599998752     


Q ss_pred             --------hhccCCh----------HHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250          182 --------ILLDWND----------EECVKILKKCKEAITRDGKKRKVIIKDMI  217 (259)
Q Consensus       182 --------vlh~~~d----------~~~~~il~~~~~~L~p~~~gg~lli~e~~  217 (259)
                              +.++.|.          +...++++++.+.|+|   ||.+ ++|..
T Consensus       196 ~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~---gG~l-~~e~g  245 (284)
T TIGR00536       196 EDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKP---NGFL-VCEIG  245 (284)
T ss_pred             chhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccC---CCEE-EEEEC
Confidence                    2222221          2456789999999999   7754 55553

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.09  E-value=5e-10  Score=83.45  Aligned_cols=96  Identities=14%  Similarity=0.100  Sum_probs=76.8

Q ss_pred             CeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-C--CC--CccEEeehhhh
Q 041250          116 NSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-A--IS--PAYAVLLKWIL  183 (259)
Q Consensus       116 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~--~~--~~D~~~~~~vl  183 (259)
                      .+|||+|||+|.++..+++.. ..+++++|+ |..++.++.      ..+|++++.+|+++ .  .+  ++|+|+++-..
T Consensus         2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~   80 (117)
T PF13659_consen    2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY   80 (117)
T ss_dssp             EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred             CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence            489999999999999999998 789999999 888888776      45789999999987 3  33  59999998766


Q ss_pred             ccCC------hHHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250          184 LDWN------DEECVKILKKCKEAITRDGKKRKVIIKD  215 (259)
Q Consensus       184 h~~~------d~~~~~il~~~~~~L~p~~~gg~lli~e  215 (259)
                      +...      .+....+++++.+.|+|   ||.++++-
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~---gG~~~~~~  115 (117)
T PF13659_consen   81 GPRSGDKAALRRLYSRFLEAAARLLKP---GGVLVFIT  115 (117)
T ss_dssp             TSBTT----GGCHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred             ccccccchhhHHHHHHHHHHHHHHcCC---CeEEEEEe
Confidence            6432      12346889999999999   89887753

...

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.08  E-value=1.9e-09  Score=92.46  Aligned_cols=99  Identities=17%  Similarity=0.260  Sum_probs=77.6

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCCCC--CccEEeehhhh
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAIS--PAYAVLLKWIL  183 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~~--~~D~~~~~~vl  183 (259)
                      ..+..+|||+|||+|.++..+++..|+.+++++|+ +.+++.+++     ...+++++.+|++++.+  .||+|++....
T Consensus       106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy  185 (275)
T PRK09328        106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPPY  185 (275)
T ss_pred             ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCCc
Confidence            34567899999999999999999999999999999 788887776     34689999999988654  59999875322


Q ss_pred             ------ccCCh------------------HHHHHHHHHHHHhcccCCCCcEEEE
Q 041250          184 ------LDWND------------------EECVKILKKCKEAITRDGKKRKVII  213 (259)
Q Consensus       184 ------h~~~d------------------~~~~~il~~~~~~L~p~~~gg~lli  213 (259)
                            +...+                  +...++++++.+.|+|   ||.+++
T Consensus       186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~---gG~l~~  236 (275)
T PRK09328        186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKP---GGWLLL  236 (275)
T ss_pred             CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhccc---CCEEEE
Confidence                  11111                  2235789999999999   888776

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.07  E-value=1.4e-09  Score=96.66  Aligned_cols=107  Identities=12%  Similarity=0.201  Sum_probs=81.3

Q ss_pred             HHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC---CCC--
Q 041250          104 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK---AIS--  172 (259)
Q Consensus       104 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~---~~~--  172 (259)
                      +++.+.  ......+||||||+|.++..+++++|+..++++|+ +.++..+.+     ..+++.++.+|...   ..+  
T Consensus       114 ~~~~~~--~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~  191 (390)
T PRK14121        114 FLDFIS--KNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSN  191 (390)
T ss_pred             HHHHhc--CCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCC
Confidence            444444  34456899999999999999999999999999999 777766654     45789999999853   344  


Q ss_pred             CccEEeehhhhccCChHH-----HHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          173 PAYAVLLKWILLDWNDEE-----CVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       173 ~~D~~~~~~vlh~~~d~~-----~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      .+|.|++.... .|+...     ...+|+.++++|+|   ||.+.+..-
T Consensus       192 s~D~I~lnFPd-PW~KkrHRRlv~~~fL~e~~RvLkp---GG~l~l~TD  236 (390)
T PRK14121        192 SVEKIFVHFPV-PWDKKPHRRVISEDFLNEALRVLKP---GGTLELRTD  236 (390)
T ss_pred             ceeEEEEeCCC-CccccchhhccHHHHHHHHHHHcCC---CcEEEEEEE
Confidence            48998876432 354322     14789999999999   999888654

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.07  E-value=1.4e-09  Score=77.90  Aligned_cols=93  Identities=19%  Similarity=0.241  Sum_probs=77.4

Q ss_pred             eEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCCC---C-CccEEeehhhhccC
Q 041250          117 SLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAI---S-PAYAVLLKWILLDW  186 (259)
Q Consensus       117 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~---~-~~D~~~~~~vlh~~  186 (259)
                      +++|+|||.|.++..+++ .+..+++++|. +..+..+++     ...++++..+|+.+..   + ++|++++...++.+
T Consensus         1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~   79 (107)
T cd02440           1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL   79 (107)
T ss_pred             CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence            589999999999999988 67789999998 666666652     5678999999998832   2 59999999999875


Q ss_pred             ChHHHHHHHHHHHHhcccCCCCcEEEEE
Q 041250          187 NDEECVKILKKCKEAITRDGKKRKVIIK  214 (259)
Q Consensus       187 ~d~~~~~il~~~~~~L~p~~~gg~lli~  214 (259)
                       .+....+++++.+.++|   +|.+++.
T Consensus        80 -~~~~~~~l~~~~~~l~~---~g~~~~~  103 (107)
T cd02440          80 -VEDLARFLEEARRLLKP---GGVLVLT  103 (107)
T ss_pred             -hhHHHHHHHHHHHHcCC---CCEEEEE
Confidence             45567899999999999   8988765

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.07  E-value=6.5e-10  Score=92.80  Aligned_cols=109  Identities=6%  Similarity=0.126  Sum_probs=87.2

Q ss_pred             HHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-C--CC-
Q 041250          104 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-A--IS-  172 (259)
Q Consensus       104 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~--~~-  172 (259)
                      ++..+.. .+...+|||+|||+|.++..++++.++++++++++ +.+.+.|++      ..+||+++++|+.+ .  .+ 
T Consensus        35 LL~~~~~-~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~  113 (248)
T COG4123          35 LLAAFAP-VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVF  113 (248)
T ss_pred             HHHhhcc-cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccc
Confidence            3444431 44578999999999999999999999999999999 888888887      57999999999987 2  22 


Q ss_pred             -CccEEeehhhhccCChH----------------HHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          173 -PAYAVLLKWILLDWNDE----------------ECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       173 -~~D~~~~~~vlh~~~d~----------------~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                       +||+|+++--.+.-+..                .-..+++.+...|+|   ||++.++-.
T Consensus       114 ~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~---~G~l~~V~r  171 (248)
T COG4123         114 ASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKP---GGRLAFVHR  171 (248)
T ss_pred             cccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccC---CCEEEEEec
Confidence             48999998766654433                136789999999999   899987753

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.06  E-value=2.6e-09  Score=88.12  Aligned_cols=104  Identities=15%  Similarity=0.217  Sum_probs=77.6

Q ss_pred             HHHhcccccCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeechHHHhhcccCCCCeEEEeCCCCCC---------CC-
Q 041250          104 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKA---------IS-  172 (259)
Q Consensus       104 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~~---------~~-  172 (259)
                      +.+.+. .+.+..+|||||||+|.++..+++.. +..+++++|+.++.     ...+++++.+|+.++         .+ 
T Consensus        42 ~~~~~~-~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~-----~~~~v~~i~~D~~~~~~~~~i~~~~~~  115 (209)
T PRK11188         42 IQQSDK-LFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD-----PIVGVDFLQGDFRDELVLKALLERVGD  115 (209)
T ss_pred             HHHHhc-cCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc-----CCCCcEEEecCCCChHHHHHHHHHhCC
Confidence            344444 24566799999999999999999986 55799999995532     234699999999873         32 


Q ss_pred             -CccEEeehhhhccCChH---------HHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          173 -PAYAVLLKWILLDWNDE---------ECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       173 -~~D~~~~~~vlh~~~d~---------~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                       .+|+|++....|...+.         ....+|+.+.+.|+|   ||.+++..+
T Consensus       116 ~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~Lkp---GG~~vi~~~  166 (209)
T PRK11188        116 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAP---GGSFVVKVF  166 (209)
T ss_pred             CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCC---CCEEEEEEe
Confidence             49999987666544321         124689999999999   999988754

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.05  E-value=1.6e-09  Score=90.07  Aligned_cols=96  Identities=16%  Similarity=0.149  Sum_probs=77.7

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CC-CCeEEEeCCCCC-C--C-CCccEEeehhhh
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DL-VNLKYVGGDMFK-A--I-SPAYAVLLKWIL  183 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~-~ri~~~~~d~~~-~--~-~~~D~~~~~~vl  183 (259)
                      ...+|||+|||+|.++..+++..  .+++++|+ +.+++.+++    .. .++++...|+.+ +  . ..||++++.+++
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l  122 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL  122 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence            36789999999999999998864  45999999 777777765    22 268999888865 2  2 259999999999


Q ss_pred             ccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          184 LDWNDEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       184 h~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      |+..+.  ..+|+++.+.|+|   ||.+++...
T Consensus       123 ~~~~~~--~~~l~~~~~~L~~---gG~l~i~~~  150 (224)
T TIGR01983       123 EHVPDP--QAFIRACAQLLKP---GGILFFSTI  150 (224)
T ss_pred             HhCCCH--HHHHHHHHHhcCC---CcEEEEEec
Confidence            998875  4799999999999   899887654

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.04  E-value=2.1e-09  Score=96.23  Aligned_cols=101  Identities=12%  Similarity=0.156  Sum_probs=76.8

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCCC-CC---CccEEeehhhh
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFKA-IS---PAYAVLLKWIL  183 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~~-~~---~~D~~~~~~vl  183 (259)
                      +...+|||+|||+|.++..+++++|+.+++++|+ +.+++.+++    ...+++++.+|++++ .+   +||+|+++-..
T Consensus       250 ~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPY  329 (423)
T PRK14966        250 PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPY  329 (423)
T ss_pred             CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCC
Confidence            3456899999999999999999999999999999 899988876    345899999999873 32   49999986422


Q ss_pred             ccCC---------------------h--HHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250          184 LDWN---------------------D--EECVKILKKCKEAITRDGKKRKVIIKDMI  217 (259)
Q Consensus       184 h~~~---------------------d--~~~~~il~~~~~~L~p~~~gg~lli~e~~  217 (259)
                      ..-.                     +  +--.++++.+.+.|+|   ||.++ +|.-
T Consensus       330 I~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~Lkp---gG~li-lEiG  382 (423)
T PRK14966        330 IENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAE---GGFLL-LEHG  382 (423)
T ss_pred             CCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCC---CcEEE-EEEC
Confidence            1110                     0  1234778888889999   78754 5553

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=99.04  E-value=1.2e-09  Score=87.55  Aligned_cols=137  Identities=17%  Similarity=0.162  Sum_probs=96.2

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeE-EEeCCCCC-C-CC--CccEEeehh
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLK-YVGGDMFK-A-IS--PAYAVLLKW  181 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~-~~~~d~~~-~-~~--~~D~~~~~~  181 (259)
                      ++...||+||||+|..-... .--|..++|++|- +.+-+.+.+     ....+. |+.++..+ + ++  ++|+|+...
T Consensus        75 ~~K~~vLEvgcGtG~Nfkfy-~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tl  153 (252)
T KOG4300|consen   75 SGKGDVLEVGCGTGANFKFY-PWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTL  153 (252)
T ss_pred             cCccceEEecccCCCCcccc-cCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEE
Confidence            44567899999999875431 2225778999997 666665544     567777 88888877 4 34  599999998


Q ss_pred             hhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccCHHHHHHHHh
Q 041250          182 ILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAKIFA  257 (259)
Q Consensus       182 vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~e~~~ll~  257 (259)
                      +|-..  ++.++.|+++.+.|+|   ||+++++|.+..+.+.-..  -.....+-.--..+.|-..|.+-|+.|..
T Consensus       154 vLCSv--e~~~k~L~e~~rlLRp---gG~iifiEHva~~y~~~n~--i~q~v~ep~~~~~~dGC~ltrd~~e~Led  222 (252)
T KOG4300|consen  154 VLCSV--EDPVKQLNEVRRLLRP---GGRIIFIEHVAGEYGFWNR--ILQQVAEPLWHLESDGCVLTRDTGELLED  222 (252)
T ss_pred             EEecc--CCHHHHHHHHHHhcCC---CcEEEEEecccccchHHHH--HHHHHhchhhheeccceEEehhHHHHhhh
Confidence            88544  4468999999999999   9999999998877665311  11223333222335677777777776644

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.03  E-value=2.5e-09  Score=87.56  Aligned_cols=98  Identities=17%  Similarity=0.248  Sum_probs=77.5

Q ss_pred             HhcccccCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeec-hHHHhhccc-----C-CCCeEEEeCCCCC--C-C-CC
Q 041250          106 QKCKNVFEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES-----D-LVNLKYVGGDMFK--A-I-SP  173 (259)
Q Consensus       106 ~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~-~~ri~~~~~d~~~--~-~-~~  173 (259)
                      ..++  .....+|+|+|||+|.++..+++.. |..+++++|+ +.+++.+++     . .+++.++.+|+.+  + . +.
T Consensus        34 ~~l~--~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~  111 (198)
T PRK00377         34 SKLR--LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEK  111 (198)
T ss_pred             HHcC--CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCC
Confidence            4445  6667899999999999999998864 6779999999 888887765     2 5789999999876  2 2 35


Q ss_pred             ccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEE
Q 041250          174 AYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVII  213 (259)
Q Consensus       174 ~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli  213 (259)
                      +|.+++..     .......+++.+.+.|+|   ||++++
T Consensus       112 ~D~V~~~~-----~~~~~~~~l~~~~~~Lkp---gG~lv~  143 (198)
T PRK00377        112 FDRIFIGG-----GSEKLKEIISASWEIIKK---GGRIVI  143 (198)
T ss_pred             CCEEEECC-----CcccHHHHHHHHHHHcCC---CcEEEE
Confidence            99998743     223356789999999999   898876

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=99.03  E-value=2.9e-09  Score=88.27  Aligned_cols=122  Identities=10%  Similarity=0.082  Sum_probs=90.7

Q ss_pred             hHHHHHhccc-ccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----------------CCCCeE
Q 041250          101 TSVMIQKCKN-VFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----------------DLVNLK  161 (259)
Q Consensus       101 ~~~~~~~~~~-~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------------~~~ri~  161 (259)
                      .+.+.+.++. ......+||+.|||.|.-+..|+++  +.+++++|+ +.+++.+.+                 ..++|+
T Consensus        23 ~p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~  100 (218)
T PF05724_consen   23 NPALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRIT  100 (218)
T ss_dssp             THHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEE
T ss_pred             CHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceE
Confidence            4555555552 1455679999999999999999998  678999999 778877621                 246899


Q ss_pred             EEeCCCCC-CCC---CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCC-CCCchh
Q 041250          162 YVGGDMFK-AIS---PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENR-KKDYKS  227 (259)
Q Consensus       162 ~~~~d~~~-~~~---~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~-~~~~~~  227 (259)
                      +.++|||+ +..   +||+|+=+..|+-++++...+..+.+.+.|+|   ||+++++....+.. ..+||+
T Consensus       101 ~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p---~g~~lLi~l~~~~~~~~GPPf  168 (218)
T PF05724_consen  101 IYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKP---GGRGLLITLEYPQGEMEGPPF  168 (218)
T ss_dssp             EEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEE---EEEEEEEEEES-CSCSSSSS-
T ss_pred             EEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCC---CCcEEEEEEEcCCcCCCCcCC
Confidence            99999999 322   59999999999999999999999999999999   89954444443333 234543

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PRK14967 putative methyltransferase; Provisional

Probab=99.00  E-value=4.7e-09  Score=87.50  Aligned_cols=103  Identities=16%  Similarity=0.121  Sum_probs=76.0

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCCCCC--CccEEeehhhhc
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFKAIS--PAYAVLLKWILL  184 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~~~~--~~D~~~~~~vlh  184 (259)
                      .....+|||+|||+|.++..+++. +..+++++|+ +.+++.+++    ...+++++.+|+.+..+  +||+|++..-.+
T Consensus        34 ~~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~  112 (223)
T PRK14967         34 LGPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPPYV  112 (223)
T ss_pred             cCCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCCCC
Confidence            455679999999999999998876 3348999999 788877665    23468899999987443  599999874222


Q ss_pred             cCC-------------------hHHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 041250          185 DWN-------------------DEECVKILKKCKEAITRDGKKRKVIIKDMIK  218 (259)
Q Consensus       185 ~~~-------------------d~~~~~il~~~~~~L~p~~~gg~lli~e~~~  218 (259)
                      .-+                   .+....+++++.+.|+|   ||+++++....
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~---gG~l~~~~~~~  162 (223)
T PRK14967        113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAP---GGSLLLVQSEL  162 (223)
T ss_pred             CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCC---CcEEEEEEecc
Confidence            111                   01235688999999999   99998865543

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=98.98  E-value=4.4e-09  Score=91.01  Aligned_cols=96  Identities=16%  Similarity=0.158  Sum_probs=72.9

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCCCC-CccEEeehhhhc
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAIS-PAYAVLLKWILL  184 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~-~~D~~~~~~vlh  184 (259)
                      ....+|||+|||+|.++..+++. +..+++++|+ |.+++.+++      ...++.+...+.....+ +||+|+++... 
T Consensus       158 ~~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~-  235 (288)
T TIGR00406       158 LKDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILA-  235 (288)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCH-
Confidence            34589999999999999888765 4458999999 888888776      34567777776443223 69999876433 


Q ss_pred             cCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250          185 DWNDEECVKILKKCKEAITRDGKKRKVIIKDMI  217 (259)
Q Consensus       185 ~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~  217 (259)
                          +....+++++.+.|+|   ||++++....
T Consensus       236 ----~~l~~ll~~~~~~Lkp---gG~li~sgi~  261 (288)
T TIGR00406       236 ----EVIKELYPQFSRLVKP---GGWLILSGIL  261 (288)
T ss_pred             ----HHHHHHHHHHHHHcCC---CcEEEEEeCc
Confidence                2345789999999999   9998887754

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK14968 putative methyltransferase; Provisional

Probab=98.98  E-value=7.7e-09  Score=83.44  Aligned_cols=99  Identities=17%  Similarity=0.238  Sum_probs=75.8

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCC-eEEEeCCCCCCCC--CccEEeehhh
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVN-LKYVGGDMFKAIS--PAYAVLLKWI  182 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~r-i~~~~~d~~~~~~--~~D~~~~~~v  182 (259)
                      .+..+|||+|||+|.++..+++.  +.+++++|+ +.+++.+++      ...+ +.++.+|+.++.+  .+|++++...
T Consensus        22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p   99 (188)
T PRK14968         22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPP   99 (188)
T ss_pred             cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCC
Confidence            45678999999999999999988  578999999 788887765      1223 8999999988544  4999987654


Q ss_pred             hccCC-------------------hHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          183 LLDWN-------------------DEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       183 lh~~~-------------------d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      ++..+                   ......+++++.+.|+|   ||.+++...
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~---gG~~~~~~~  149 (188)
T PRK14968        100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKP---GGRILLLQS  149 (188)
T ss_pred             cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCC---CeEEEEEEc
Confidence            43211                   12245689999999999   898877653

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=98.97  E-value=6.8e-09  Score=88.03  Aligned_cols=93  Identities=19%  Similarity=0.297  Sum_probs=68.4

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCCCCCccEEeehhhhc
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAISPAYAVLLKWILL  184 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~~~D~~~~~~vlh  184 (259)
                      .....+|||+|||+|.+++.+++..+. +++++|+ |.+++.|++      ..+++.+..+|.     .||+|+.+..  
T Consensus       117 ~~~~~~VLDiGcGsG~l~i~~~~~g~~-~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-----~fD~Vvani~--  188 (250)
T PRK00517        117 VLPGKTVLDVGCGSGILAIAAAKLGAK-KVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-----KADVIVANIL--  188 (250)
T ss_pred             cCCCCEEEEeCCcHHHHHHHHHHcCCC-eEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-----CcCEEEEcCc--
Confidence            345689999999999999987776443 6999999 888888876      224444443332     5999886532  


Q ss_pred             cCChHHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 041250          185 DWNDEECVKILKKCKEAITRDGKKRKVIIKDMIK  218 (259)
Q Consensus       185 ~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~  218 (259)
                         .+....+++++.+.|+|   ||.+++.....
T Consensus       189 ---~~~~~~l~~~~~~~Lkp---gG~lilsgi~~  216 (250)
T PRK00517        189 ---ANPLLELAPDLARLLKP---GGRLILSGILE  216 (250)
T ss_pred             ---HHHHHHHHHHHHHhcCC---CcEEEEEECcH
Confidence               23345789999999999   99999876543

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=98.96  E-value=9.3e-09  Score=86.89  Aligned_cols=140  Identities=12%  Similarity=0.071  Sum_probs=101.3

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCC--CeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCC------CCCccEE
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPK--LECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKA------ISPAYAV  177 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~------~~~~D~~  177 (259)
                      ..+.+||||.||+|.+....+..+|.  .++...|. |..++..++      ..+-++|..+|.|+.      .|..+++
T Consensus       134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~  213 (311)
T PF12147_consen  134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA  213 (311)
T ss_pred             CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence            45789999999999999999999998  68999998 777776665      445559999999983      2458999


Q ss_pred             eehhhhccCChHHHH-HHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccCHHHHHHHH
Q 041250          178 LLKWILLDWNDEECV-KILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAKIF  256 (259)
Q Consensus       178 ~~~~vlh~~~d~~~~-~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~e~~~ll  256 (259)
                      +.+-++-.++|.+.+ +-|+.+++++.|   ||.++....-.++.-.-.    ...+.+..--.-.--+.||..|..+|+
T Consensus       214 iVsGL~ElF~Dn~lv~~sl~gl~~al~p---gG~lIyTgQPwHPQle~I----Ar~LtsHr~g~~WvMRrRsq~EmD~Lv  286 (311)
T PF12147_consen  214 IVSGLYELFPDNDLVRRSLAGLARALEP---GGYLIYTGQPWHPQLEMI----ARVLTSHRDGKAWVMRRRSQAEMDQLV  286 (311)
T ss_pred             EEecchhhCCcHHHHHHHHHHHHHHhCC---CcEEEEcCCCCCcchHHH----HHHHhcccCCCceEEEecCHHHHHHHH
Confidence            999999999997755 479999999999   888777664333322110    001111000000011779999999999


Q ss_pred             hcC
Q 041250          257 ADS  259 (259)
Q Consensus       257 ~~a  259 (259)
                      ++|
T Consensus       287 ~~a  289 (311)
T PF12147_consen  287 EAA  289 (311)
T ss_pred             HHc
Confidence            875

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.96  E-value=1.2e-08  Score=87.04  Aligned_cols=112  Identities=10%  Similarity=0.074  Sum_probs=76.1

Q ss_pred             HHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhh---ccc-C--CCCeEEEeCCCCC-C-CCC
Q 041250          103 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNG---LES-D--LVNLKYVGGDMFK-A-ISP  173 (259)
Q Consensus       103 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~---a~~-~--~~ri~~~~~d~~~-~-~~~  173 (259)
                      .+..+++  --...+|+|||||.|.++.+++++.|. .++++|- +...-+   +++ .  ..++.+.+.-+.+ + ...
T Consensus       106 rl~p~l~--~L~gk~VLDIGC~nGY~~frM~~~GA~-~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~~  182 (315)
T PF08003_consen  106 RLLPHLP--DLKGKRVLDIGCNNGYYSFRMLGRGAK-SVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLGA  182 (315)
T ss_pred             HHHhhhC--CcCCCEEEEecCCCcHHHHHHhhcCCC-EEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccCC
Confidence            3445553  223579999999999999999999764 5999995 222222   222 2  2233344322222 2 225


Q ss_pred             ccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCC
Q 041250          174 AYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRK  222 (259)
Q Consensus       174 ~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~  222 (259)
                      ||+|++--||+|..+.  ...|+.+++.|+|   ||.+++=..+++.+.
T Consensus       183 FDtVF~MGVLYHrr~P--l~~L~~Lk~~L~~---gGeLvLETlvi~g~~  226 (315)
T PF08003_consen  183 FDTVFSMGVLYHRRSP--LDHLKQLKDSLRP---GGELVLETLVIDGDE  226 (315)
T ss_pred             cCEEEEeeehhccCCH--HHHHHHHHHhhCC---CCEEEEEEeeecCCC
Confidence            9999999999998774  5789999999999   887766666666544

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.95  E-value=4.6e-09  Score=97.51  Aligned_cols=96  Identities=15%  Similarity=0.221  Sum_probs=75.1

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCCCC--CccEEeehhh---
Q 041250          115 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAIS--PAYAVLLKWI---  182 (259)
Q Consensus       115 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~--~~D~~~~~~v---  182 (259)
                      ..+|||+|||+|.+++.+++.+|+.+++++|+ +.+++.|++      ..++++++.+|+++..+  .||+|+++--   
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi~  218 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYIS  218 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCCC
Confidence            46899999999999999999999999999999 888888876      34689999999988543  5999998421   


Q ss_pred             -----------hccCC--------h--HHHHHHHHHHHHhcccCCCCcEEEE
Q 041250          183 -----------LLDWN--------D--EECVKILKKCKEAITRDGKKRKVII  213 (259)
Q Consensus       183 -----------lh~~~--------d--~~~~~il~~~~~~L~p~~~gg~lli  213 (259)
                                 ..+.|        +  +.-.++++++.+.|+|   ||.+++
T Consensus       219 ~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~---gG~l~l  267 (506)
T PRK01544        219 HSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKP---NGKIIL  267 (506)
T ss_pred             chhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccC---CCEEEE
Confidence                       11111        0  1235678889999999   887754

>PHA03411 putative methyltransferase; Provisional

Probab=98.95  E-value=5.7e-09  Score=88.44  Aligned_cols=97  Identities=12%  Similarity=0.117  Sum_probs=78.2

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCCCC-C-CccEEeehhhhccCChHHH
Q 041250          115 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKAI-S-PAYAVLLKWILLDWNDEEC  191 (259)
Q Consensus       115 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~-~-~~D~~~~~~vlh~~~d~~~  191 (259)
                      ..+|||+|||+|.++..++++.+..+++++|+ +.+++.+++..++++++.+|+++.. . .||+|++...++..+.++.
T Consensus        65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~~d~  144 (279)
T PHA03411         65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISNPPFGKINTTDT  144 (279)
T ss_pred             CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEcCCccccCchhh
Confidence            46899999999999999999888889999999 8999988876678999999999832 3 5999999887776543321


Q ss_pred             ------------------HHHHHHHHHhcccCCCCcEEEEE
Q 041250          192 ------------------VKILKKCKEAITRDGKKRKVIIK  214 (259)
Q Consensus       192 ------------------~~il~~~~~~L~p~~~gg~lli~  214 (259)
                                        .+.++.....|+|   +|.++++
T Consensus       145 ~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p---~G~~~~~  182 (279)
T PHA03411        145 KDVFEYTGGEFEFKVMTLGQKFADVGYFIVP---TGSAGFA  182 (279)
T ss_pred             hhhhhhccCccccccccHHHHHhhhHheecC---CceEEEE
Confidence                              3566777888999   7766655

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=98.94  E-value=1.2e-08  Score=84.42  Aligned_cols=97  Identities=14%  Similarity=0.173  Sum_probs=73.9

Q ss_pred             HHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCCCC---Cc
Q 041250          104 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAIS---PA  174 (259)
Q Consensus       104 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~~---~~  174 (259)
                      ++..+.  ..+..+|||||||+|.++..+++...  +++++|. +.+++.+++     ...++++..+|..+..+   .|
T Consensus        70 l~~~l~--~~~~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~f  145 (212)
T PRK00312         70 MTELLE--LKPGDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPF  145 (212)
T ss_pred             HHHhcC--CCCCCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCc
Confidence            344444  56678999999999999988777753  7999998 888887765     34579999999887433   59


Q ss_pred             cEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250          175 YAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKD  215 (259)
Q Consensus       175 D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e  215 (259)
                      |+|++...++..        .+.+.+.|+|   ||++++.-
T Consensus       146 D~I~~~~~~~~~--------~~~l~~~L~~---gG~lv~~~  175 (212)
T PRK00312        146 DRILVTAAAPEI--------PRALLEQLKE---GGILVAPV  175 (212)
T ss_pred             CEEEEccCchhh--------hHHHHHhcCC---CcEEEEEE
Confidence            999998766544        3456788999   89887754

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=98.94  E-value=5.7e-09  Score=85.62  Aligned_cols=111  Identities=16%  Similarity=0.287  Sum_probs=82.3

Q ss_pred             HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------------C------------
Q 041250          102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------------D------------  156 (259)
Q Consensus       102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------~------------  156 (259)
                      +..++.+...+-.+..+|||||.+|.++..+++.+....++++|+ +..|..|++            .            
T Consensus        46 D~rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~  125 (288)
T KOG2899|consen   46 DPRLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFG  125 (288)
T ss_pred             ChhhhhccccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccc
Confidence            334444443355678899999999999999999998888999999 777777765            0            


Q ss_pred             -----------------------CCCeEEEeCCCCC-CCCCccEEeeh----hhhccCChHHHHHHHHHHHHhcccCCCC
Q 041250          157 -----------------------LVNLKYVGGDMFK-AISPAYAVLLK----WILLDWNDEECVKILKKCKEAITRDGKK  208 (259)
Q Consensus       157 -----------------------~~ri~~~~~d~~~-~~~~~D~~~~~----~vlh~~~d~~~~~il~~~~~~L~p~~~g  208 (259)
                                             ..|..+...||.. ..|.||+|++-    ||--+|.|+-.+++++++++.|.|   |
T Consensus       126 ~is~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~p---g  202 (288)
T KOG2899|consen  126 PISQRNEADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHP---G  202 (288)
T ss_pred             cccccccccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCc---C
Confidence                                   1133334445555 45679988754    344489999999999999999999   5


Q ss_pred             cEEEEEee
Q 041250          209 RKVIIKDM  216 (259)
Q Consensus       209 g~lli~e~  216 (259)
                      | ++|+|+
T Consensus       203 G-iLvvEP  209 (288)
T KOG2899|consen  203 G-ILVVEP  209 (288)
T ss_pred             c-EEEEcC
Confidence            5 566775

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=98.93  E-value=5.4e-09  Score=85.24  Aligned_cols=87  Identities=15%  Similarity=0.143  Sum_probs=68.1

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCC---CCC--CccEEeehhhhccC
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK---AIS--PAYAVLLKWILLDW  186 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~---~~~--~~D~~~~~~vlh~~  186 (259)
                      +...+|||||||+|.++..+++.. ..+++++|+ ++++..+++  .+++++.+|+.+   +.+  .||+|++.+++|+.
T Consensus        12 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~--~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~   88 (194)
T TIGR02081        12 PPGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVA--RGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQAT   88 (194)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHH--cCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcC
Confidence            345799999999999998887653 567899999 788877763  357888888865   233  49999999999999


Q ss_pred             ChHHHHHHHHHHHHhccc
Q 041250          187 NDEECVKILKKCKEAITR  204 (259)
Q Consensus       187 ~d~~~~~il~~~~~~L~p  204 (259)
                      ++.  .++|+++.+.+++
T Consensus        89 ~d~--~~~l~e~~r~~~~  104 (194)
T TIGR02081        89 RNP--EEILDEMLRVGRH  104 (194)
T ss_pred             cCH--HHHHHHHHHhCCe
Confidence            774  4688888776554

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK00811 spermidine synthase; Provisional

Probab=98.91  E-value=9e-09  Score=88.84  Aligned_cols=99  Identities=18%  Similarity=0.207  Sum_probs=76.1

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----------CCCCeEEEeCCCCC--CC--CCccEE
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----------DLVNLKYVGGDMFK--AI--SPAYAV  177 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~ri~~~~~d~~~--~~--~~~D~~  177 (259)
                      +++.+||+||||.|..+.++++..+..+++++|+ +.+++.+++          ..+|++++.+|..+  ..  ..||+|
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI  154 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI  154 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence            4578999999999999999997645568999999 899998887          15799999999876  22  259999


Q ss_pred             eehhhhccCChHH--HHHHHHHHHHhcccCCCCcEEEEE
Q 041250          178 LLKWILLDWNDEE--CVKILKKCKEAITRDGKKRKVIIK  214 (259)
Q Consensus       178 ~~~~vlh~~~d~~--~~~il~~~~~~L~p~~~gg~lli~  214 (259)
                      ++...-+..+...  ...+++.+++.|+|   ||.+++.
T Consensus       155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~---gGvlv~~  190 (283)
T PRK00811        155 IVDSTDPVGPAEGLFTKEFYENCKRALKE---DGIFVAQ  190 (283)
T ss_pred             EECCCCCCCchhhhhHHHHHHHHHHhcCC---CcEEEEe
Confidence            9864333222221  35789999999999   8876653

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=98.90  E-value=1.1e-08  Score=86.80  Aligned_cols=97  Identities=14%  Similarity=0.184  Sum_probs=73.8

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc--CCCCeEEEeCCCCCCC-----CCccEEeehhhhc--
Q 041250          115 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES--DLVNLKYVGGDMFKAI-----SPAYAVLLKWILL--  184 (259)
Q Consensus       115 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~ri~~~~~d~~~~~-----~~~D~~~~~~vlh--  184 (259)
                      ..+|||+|||+|.++..+++..|+.+++++|+ +.+++.+++  ...+++++.+|+++..     ..||+|++.--..  
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~  166 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPT  166 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCc
Confidence            45899999999999999999999999999999 899988886  2223689999998733     2599998764221  


Q ss_pred             ----cCCh------------------HHHHHHHHHHHHhcccCCCCcEEEEE
Q 041250          185 ----DWND------------------EECVKILKKCKEAITRDGKKRKVIIK  214 (259)
Q Consensus       185 ----~~~d------------------~~~~~il~~~~~~L~p~~~gg~lli~  214 (259)
                          ..++                  +-..++++.+.+.|+|   ||++++.
T Consensus       167 ~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~---gG~l~l~  215 (251)
T TIGR03704       167 DAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAP---GGHLLVE  215 (251)
T ss_pred             hhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCC---CCEEEEE
Confidence                1111                  1134788888999999   8877654

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=98.89  E-value=1.3e-08  Score=87.50  Aligned_cols=100  Identities=23%  Similarity=0.312  Sum_probs=78.4

Q ss_pred             eEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCCCC-CccEEeehh--hhcc--
Q 041250          117 SLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAIS-PAYAVLLKW--ILLD--  185 (259)
Q Consensus       117 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~~-~~D~~~~~~--vlh~--  185 (259)
                      +|+|+|||+|.+++.++++.|+.++++.|+ |.+++.|++     ...++.++.+|+|++.+ +||+|+++-  +-..  
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~~  192 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAEDP  192 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCccc
Confidence            799999999999999999999999999999 899988877     22777888889999766 699988873  2221  


Q ss_pred             ---------C--------C--hHHHHHHHHHHHHhcccCCCCcEEEEEeeeecC
Q 041250          186 ---------W--------N--DEECVKILKKCKEAITRDGKKRKVIIKDMIKEN  220 (259)
Q Consensus       186 ---------~--------~--d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~  220 (259)
                               .        .  -+-..+++.++.+.|+|    |.++++|.....
T Consensus       193 ~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~----~g~l~le~g~~q  242 (280)
T COG2890         193 ELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKP----GGVLILEIGLTQ  242 (280)
T ss_pred             ccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCC----CcEEEEEECCCc
Confidence                     0        0  12346788999999999    556777765444

>TIGR00438 rrmJ cell division protein FtsJ

Probab=98.87  E-value=1.6e-08  Score=82.02  Aligned_cols=95  Identities=17%  Similarity=0.271  Sum_probs=71.1

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeechHHHhhcccCCCCeEEEeCCCCCC---------CC--CccEEee
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKA---------IS--PAYAVLL  179 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~~---------~~--~~D~~~~  179 (259)
                      .+...+|||+|||+|.++..+++++ +..+++++|+.+..     ...+++++.+|+.++         .+  ++|+|++
T Consensus        30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~  104 (188)
T TIGR00438        30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMS  104 (188)
T ss_pred             cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEc
Confidence            4667899999999999999999887 66789999995432     235788999998762         23  4999997


Q ss_pred             hhhhc---cCC------hHHHHHHHHHHHHhcccCCCCcEEEEE
Q 041250          180 KWILL---DWN------DEECVKILKKCKEAITRDGKKRKVIIK  214 (259)
Q Consensus       180 ~~vlh---~~~------d~~~~~il~~~~~~L~p~~~gg~lli~  214 (259)
                      ....|   .|.      .+...++++++++.|+|   ||++++.
T Consensus       105 ~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lvi~  145 (188)
T TIGR00438       105 DAAPNISGYWDIDHLRSIDLVELALDIAKEVLKP---KGNFVVK  145 (188)
T ss_pred             CCCCCCCCCccccHHHHHHHHHHHHHHHHHHccC---CCEEEEE
Confidence            54322   121      12246789999999999   8988875

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=98.87  E-value=1.2e-08  Score=81.74  Aligned_cols=85  Identities=15%  Similarity=0.208  Sum_probs=66.7

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCC---CCC--CccEEeehhhhcc
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK---AIS--PAYAVLLKWILLD  185 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~---~~~--~~D~~~~~~vlh~  185 (259)
                      .+...+|||+|||.|.++..|.+. .++++.++|+ ++.+..+.  ...+.++++|+.+   .+|  .||.|+++.+|..
T Consensus        11 I~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv--~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~   87 (193)
T PF07021_consen   11 IEPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACV--ARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQA   87 (193)
T ss_pred             cCCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHH--HcCCCEEECCHHHhHhhCCCCCccEEehHhHHHh
Confidence            455789999999999999888875 5899999999 55454443  4467899999987   355  4999999999988


Q ss_pred             CChHHHHHHHHHHHHh
Q 041250          186 WNDEECVKILKKCKEA  201 (259)
Q Consensus       186 ~~d~~~~~il~~~~~~  201 (259)
                      ....  .++|+++.|+
T Consensus        88 ~~~P--~~vL~EmlRV  101 (193)
T PF07021_consen   88 VRRP--DEVLEEMLRV  101 (193)
T ss_pred             HhHH--HHHHHHHHHh
Confidence            8664  3678888655

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.83  E-value=5.9e-09  Score=84.88  Aligned_cols=100  Identities=8%  Similarity=0.168  Sum_probs=72.6

Q ss_pred             CCCeEEEecCCchHHHHHH----HHH----CC-CCeEEEeec-hHHHhhccc----------------------------
Q 041250          114 GLNSLVDVGGGTGTAAKAI----AKA----FP-KLECTCFDL-PHVVNGLES----------------------------  155 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l----~~~----~p-~~~~~~~D~-~~~~~~a~~----------------------------  155 (259)
                      +.-+|.-.||++|.=...+    .+.    .+ ++++++.|+ +.+++.|++                            
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~  110 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY  110 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence            5679999999999744333    331    12 468999999 889998876                            


Q ss_pred             -----CCCCeEEEeCCCCC-CCC--CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          156 -----DLVNLKYVGGDMFK-AIS--PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       156 -----~~~ri~~~~~d~~~-~~~--~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                           ...+|+|..+|+.+ +.+  ++|+|++++||-+++++...+++++++++|+|   ||.|++-..
T Consensus       111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~p---gG~L~lG~s  176 (196)
T PF01739_consen  111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKP---GGYLFLGHS  176 (196)
T ss_dssp             TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEE---EEEEEE-TT
T ss_pred             eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCC---CCEEEEecC
Confidence                 13689999999999 322  59999999999999999999999999999999   888887654

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.82  E-value=2.6e-08  Score=87.12  Aligned_cols=99  Identities=13%  Similarity=0.237  Sum_probs=75.1

Q ss_pred             HHHhcccccCCCCeEEEecCCchHHHHHHHHHCCC-CeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCCC---CC
Q 041250          104 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPK-LECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAI---SP  173 (259)
Q Consensus       104 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~---~~  173 (259)
                      +++.++  .++..+|||||||+|.++..+++..+. .+++++|. +++++.|++     ..+++.++.+|..+..   ..
T Consensus        72 ll~~L~--i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~  149 (322)
T PRK13943         72 FMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAP  149 (322)
T ss_pred             HHHhcC--CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCC
Confidence            344444  566789999999999999999998764 57999998 888887765     3468999999987632   25


Q ss_pred             ccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250          174 AYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKD  215 (259)
Q Consensus       174 ~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e  215 (259)
                      ||+|++...+++.+        ..+.+.|+|   ||++++..
T Consensus       150 fD~Ii~~~g~~~ip--------~~~~~~Lkp---gG~Lvv~~  180 (322)
T PRK13943        150 YDVIFVTVGVDEVP--------ETWFTQLKE---GGRVIVPI  180 (322)
T ss_pred             ccEEEECCchHHhH--------HHHHHhcCC---CCEEEEEe
Confidence            99999876554433        345678999   89987754

>PTZ00146 fibrillarin; Provisional

Probab=98.81  E-value=6.4e-08  Score=82.91  Aligned_cols=95  Identities=9%  Similarity=0.084  Sum_probs=72.9

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeec-hH----HHhhcccCCCCeEEEeCCCCCCC------CCccEEee
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PH----VVNGLESDLVNLKYVGGDMFKAI------SPAYAVLL  179 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~----~~~~a~~~~~ri~~~~~d~~~~~------~~~D~~~~  179 (259)
                      +....+|||+|||+|.++..+++.. |.-+++.+|+ +.    +++.++ ...+|.++.+|...+.      +.+|+|++
T Consensus       130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak-~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~  208 (293)
T PTZ00146        130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAK-KRPNIVPIIEDARYPQKYRMLVPMVDVIFA  208 (293)
T ss_pred             cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhh-hcCCCEEEECCccChhhhhcccCCCCEEEE
Confidence            5667899999999999999999986 4568999998 43    455554 3378999999987642      25899977


Q ss_pred             hhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEE
Q 041250          180 KWILLDWNDEECVKILKKCKEAITRDGKKRKVIIK  214 (259)
Q Consensus       180 ~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~  214 (259)
                      ...   .+ ++...++.++.+.|+|   ||+++|.
T Consensus       209 Dva---~p-dq~~il~~na~r~LKp---GG~~vI~  236 (293)
T PTZ00146        209 DVA---QP-DQARIVALNAQYFLKN---GGHFIIS  236 (293)
T ss_pred             eCC---Cc-chHHHHHHHHHHhccC---CCEEEEE
Confidence            653   22 3445677789999999   9999884

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=98.81  E-value=2.9e-08  Score=79.10  Aligned_cols=89  Identities=17%  Similarity=0.369  Sum_probs=65.7

Q ss_pred             HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEeCCCCC-CCC--Cc
Q 041250          102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFK-AIS--PA  174 (259)
Q Consensus       102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~-~~~--~~  174 (259)
                      ..+++.++  ..+..+|||+|||+|.++..++++  ..+++++|+ +.+++.+++   ..++++++.+|+.+ +.+  .+
T Consensus         3 ~~i~~~~~--~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~   78 (169)
T smart00650        3 DKIVRAAN--LRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQP   78 (169)
T ss_pred             HHHHHhcC--CCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCC
Confidence            44566666  666779999999999999999998  468999999 778888776   24689999999998 555  37


Q ss_pred             cEEeehhhhccCChHHHHHHH
Q 041250          175 YAVLLKWILLDWNDEECVKIL  195 (259)
Q Consensus       175 D~~~~~~vlh~~~d~~~~~il  195 (259)
                      |.++.. ..++...+...+++
T Consensus        79 d~vi~n-~Py~~~~~~i~~~l   98 (169)
T smart00650       79 YKVVGN-LPYNISTPILFKLL   98 (169)
T ss_pred             CEEEEC-CCcccHHHHHHHHH
Confidence            877654 44444433333333

>PLN02366 spermidine synthase

Probab=98.80  E-value=3.6e-08  Score=85.81  Aligned_cols=99  Identities=14%  Similarity=0.115  Sum_probs=74.3

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCC-CeEEEeec-hHHHhhccc---------CCCCeEEEeCCCCC---CCC--Ccc
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPK-LECTCFDL-PHVVNGLES---------DLVNLKYVGGDMFK---AIS--PAY  175 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~---------~~~ri~~~~~d~~~---~~~--~~D  175 (259)
                      .+++.+||+||||.|..+.++++. |. .+++++|+ +.+++.+++         ..+|++++.+|.++   ..+  .||
T Consensus        89 ~~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yD  167 (308)
T PLN02366         89 IPNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYD  167 (308)
T ss_pred             CCCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCC
Confidence            356789999999999999999865 65 47999999 778998887         14699999999764   232  599


Q ss_pred             EEeehhhhccCChH--HHHHHHHHHHHhcccCCCCcEEEEE
Q 041250          176 AVLLKWILLDWNDE--ECVKILKKCKEAITRDGKKRKVIIK  214 (259)
Q Consensus       176 ~~~~~~vlh~~~d~--~~~~il~~~~~~L~p~~~gg~lli~  214 (259)
                      +|++-..-+..+..  -...+++.+++.|+|   ||.+++.
T Consensus       168 vIi~D~~dp~~~~~~L~t~ef~~~~~~~L~p---gGvlv~q  205 (308)
T PLN02366        168 AIIVDSSDPVGPAQELFEKPFFESVARALRP---GGVVCTQ  205 (308)
T ss_pred             EEEEcCCCCCCchhhhhHHHHHHHHHHhcCC---CcEEEEC
Confidence            99875433222221  135789999999999   8877553

>TIGR00417 speE spermidine synthase

Probab=98.78  E-value=4.1e-08  Score=84.20  Aligned_cols=99  Identities=16%  Similarity=0.155  Sum_probs=76.1

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---------CCCCeEEEeCCCCC--C-CC-CccEEe
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---------DLVNLKYVGGDMFK--A-IS-PAYAVL  178 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~ri~~~~~d~~~--~-~~-~~D~~~  178 (259)
                      +++.+||+||||+|..+..+++..+..+++++|+ +.+++.+++         ..+|++++.+|.++  . .+ .||+|+
T Consensus        71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi  150 (270)
T TIGR00417        71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII  150 (270)
T ss_pred             CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence            4466999999999999999988766678999999 888888876         13689999999876  1 22 599999


Q ss_pred             ehhhhccCChHH--HHHHHHHHHHhcccCCCCcEEEEE
Q 041250          179 LKWILLDWNDEE--CVKILKKCKEAITRDGKKRKVIIK  214 (259)
Q Consensus       179 ~~~vlh~~~d~~--~~~il~~~~~~L~p~~~gg~lli~  214 (259)
                      +...-+.-+...  ....++++++.|+|   ||.+++.
T Consensus       151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~p---gG~lv~~  185 (270)
T TIGR00417       151 VDSTDPVGPAETLFTKEFYELLKKALNE---DGIFVAQ  185 (270)
T ss_pred             EeCCCCCCcccchhHHHHHHHHHHHhCC---CcEEEEc
Confidence            875433222222  35789999999999   8887775

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PHA03412 putative methyltransferase; Provisional

Probab=98.77  E-value=5.5e-08  Score=80.73  Aligned_cols=95  Identities=16%  Similarity=0.175  Sum_probs=74.2

Q ss_pred             CCeEEEecCCchHHHHHHHHHC---CCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCC-CCC-CccEEeehhhhccCC-
Q 041250          115 LNSLVDVGGGTGTAAKAIAKAF---PKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK-AIS-PAYAVLLKWILLDWN-  187 (259)
Q Consensus       115 ~~~vlDvGgG~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~~-~~D~~~~~~vlh~~~-  187 (259)
                      ..+|||+|||+|.++..++++.   +..+++++|+ +.+++.|++...++.++.+|+.. +.. .||+|+.+--++... 
T Consensus        50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~~  129 (241)
T PHA03412         50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISNPPFGKIKT  129 (241)
T ss_pred             CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEECCCCCCccc
Confidence            5799999999999999999875   4678999999 89999998866789999999987 433 599999987665332 


Q ss_pred             -h--------HHHHHHHHHHHHhcccCCCCcEEEE
Q 041250          188 -D--------EECVKILKKCKEAITRDGKKRKVII  213 (259)
Q Consensus       188 -d--------~~~~~il~~~~~~L~p~~~gg~lli  213 (259)
                       +        .-...+++++.+.+++    |.+++
T Consensus       130 ~d~~ar~~g~~~~~~li~~A~~Ll~~----G~~IL  160 (241)
T PHA03412        130 SDFKGKYTGAEFEYKVIERASQIARQ----GTFII  160 (241)
T ss_pred             cccCCcccccHHHHHHHHHHHHHcCC----CEEEe
Confidence             1        2234688888886666    65533

>PRK01581 speE spermidine synthase; Validated

Probab=98.77  E-value=5.5e-08  Score=85.56  Aligned_cols=100  Identities=13%  Similarity=0.082  Sum_probs=76.0

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------------CCCCeEEEeCCCCC--C-CC-Cc
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------------DLVNLKYVGGDMFK--A-IS-PA  174 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------~~~ri~~~~~d~~~--~-~~-~~  174 (259)
                      ..++.+||+||||+|..+.++++..+..+++++|+ |.+++.|++            ..+|++++.+|..+  . .+ .|
T Consensus       148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y  227 (374)
T PRK01581        148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY  227 (374)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence            35578999999999999998887555568999999 889998884            25799999999987  2 22 59


Q ss_pred             cEEeehhhhc---cCChHHHHHHHHHHHHhcccCCCCcEEEEE
Q 041250          175 YAVLLKWILL---DWNDEECVKILKKCKEAITRDGKKRKVIIK  214 (259)
Q Consensus       175 D~~~~~~vlh---~~~d~~~~~il~~~~~~L~p~~~gg~lli~  214 (259)
                      |+|++...-.   ....-....+++.+++.|+|   ||.+++.
T Consensus       228 DVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkP---gGV~V~Q  267 (374)
T PRK01581        228 DVIIIDFPDPATELLSTLYTSELFARIATFLTE---DGAFVCQ  267 (374)
T ss_pred             cEEEEcCCCccccchhhhhHHHHHHHHHHhcCC---CcEEEEe
Confidence            9999873110   01112235789999999999   8887665

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.77  E-value=4.3e-08  Score=84.26  Aligned_cols=99  Identities=11%  Similarity=0.193  Sum_probs=79.4

Q ss_pred             CCCeEEEecCCchHHHHH----HHHHCC----CCeEEEeec-hHHHhhccc-----------------------------
Q 041250          114 GLNSLVDVGGGTGTAAKA----IAKAFP----KLECTCFDL-PHVVNGLES-----------------------------  155 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~----l~~~~p----~~~~~~~D~-~~~~~~a~~-----------------------------  155 (259)
                      +.-+|...||++|.=...    +.+..+    ++++++.|+ +.+++.|++                             
T Consensus       115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~  194 (287)
T PRK10611        115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG  194 (287)
T ss_pred             CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence            347999999999974433    334332    467999999 888888875                             


Q ss_pred             -------CCCCeEEEeCCCCC-CCC---CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250          156 -------DLVNLKYVGGDMFK-AIS---PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKD  215 (259)
Q Consensus       156 -------~~~ri~~~~~d~~~-~~~---~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e  215 (259)
                             ...+|+|..+|..+ ++|   +||+|++++++.+++++...+++++++++|+|   ||.|++-.
T Consensus       195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~p---gG~L~lG~  262 (287)
T PRK10611        195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKP---DGLLFAGH  262 (287)
T ss_pred             eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCC---CcEEEEeC
Confidence                   01577899999998 443   59999999999999999999999999999999   89876655

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=98.76  E-value=2.7e-08  Score=78.41  Aligned_cols=100  Identities=19%  Similarity=0.094  Sum_probs=74.5

Q ss_pred             CeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCCC--C-CccEEeehhhhc-
Q 041250          116 NSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAI--S-PAYAVLLKWILL-  184 (259)
Q Consensus       116 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~--~-~~D~~~~~~vlh-  184 (259)
                      .+|||+|||.|.++..|++.-=.-+.+++|. +.+++.|+.      ..+.|+|++.|+++|.  + +||+|+-.-.+. 
T Consensus        69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DA  148 (227)
T KOG1271|consen   69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDA  148 (227)
T ss_pred             cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceee
Confidence            3999999999999999999743345789998 777777665      4556999999999952  3 589888765443 


Q ss_pred             -----cCChHHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 041250          185 -----DWNDEECVKILKKCKEAITRDGKKRKVIIKDMIK  218 (259)
Q Consensus       185 -----~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~  218 (259)
                           +-++....-.+..+.+.|+|   ||.++|...-.
T Consensus       149 isLs~d~~~~r~~~Y~d~v~~ll~~---~gifvItSCN~  184 (227)
T KOG1271|consen  149 ISLSPDGPVGRLVVYLDSVEKLLSP---GGIFVITSCNF  184 (227)
T ss_pred             eecCCCCcccceeeehhhHhhccCC---CcEEEEEecCc
Confidence                 22333334467888888999   89888876543

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=98.76  E-value=2.8e-08  Score=78.58  Aligned_cols=75  Identities=17%  Similarity=0.240  Sum_probs=62.6

Q ss_pred             EEeec-hHHHhhccc--------CCCCeEEEeCCCCC-CCC--CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCc
Q 041250          142 TCFDL-PHVVNGLES--------DLVNLKYVGGDMFK-AIS--PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKR  209 (259)
Q Consensus       142 ~~~D~-~~~~~~a~~--------~~~ri~~~~~d~~~-~~~--~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg  209 (259)
                      +++|. ++|++.|++        ...+|+|+.+|..+ |.+  .||++++..++|+++|.  .+.|++++++|+|   ||
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~--~~~l~ei~rvLkp---GG   75 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDR--LRAMKEMYRVLKP---GS   75 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCH--HHHHHHHHHHcCc---Ce
Confidence            47898 899988854        13479999999988 665  49999999999999864  5899999999999   99


Q ss_pred             EEEEEeeeecCC
Q 041250          210 KVIIKDMIKENR  221 (259)
Q Consensus       210 ~lli~e~~~~~~  221 (259)
                      +++|.|...++.
T Consensus        76 ~l~i~d~~~~~~   87 (160)
T PLN02232         76 RVSILDFNKSNQ   87 (160)
T ss_pred             EEEEEECCCCCh
Confidence            999999875543

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=98.76  E-value=1.1e-07  Score=83.86  Aligned_cols=100  Identities=14%  Similarity=0.049  Sum_probs=76.2

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-CCC--CccEEeehhh
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AIS--PAYAVLLKWI  182 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~~~--~~D~~~~~~v  182 (259)
                      +++..+|+|.|||+|.++++.+..  +.+++++|+ +.++..++.     ..+.+.+..+|+.+ +.+  .+|+|++...
T Consensus       180 ~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPP  257 (329)
T TIGR01177       180 VTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPP  257 (329)
T ss_pred             CCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCC
Confidence            566779999999999999887664  678999999 888887665     23458899999988 553  5999998633


Q ss_pred             hcc-------CChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          183 LLD-------WNDEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       183 lh~-------~~d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      ...       ...+...++|+++++.|+|   ||++++.-+
T Consensus       258 yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~---gG~lv~~~~  295 (329)
T TIGR01177       258 YGRSTTAAGDGLESLYERSLEEFHEVLKS---EGWIVYAVP  295 (329)
T ss_pred             CcCcccccCCchHHHHHHHHHHHHHHccC---CcEEEEEEc
Confidence            211       1223346899999999999   999887654

This family is found exclusively in the Archaea.

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=98.74  E-value=6.8e-08  Score=82.86  Aligned_cols=108  Identities=21%  Similarity=0.314  Sum_probs=73.6

Q ss_pred             hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc--CCCC----eEEEeCCCCC-CC-
Q 041250          101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES--DLVN----LKYVGGDMFK-AI-  171 (259)
Q Consensus       101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~r----i~~~~~d~~~-~~-  171 (259)
                      +.-.++.++....++.+++|+|||+|.++++.++... .+++++|+ |.+++.+++  ....    +.....+..+ +. 
T Consensus       149 T~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA-~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~  227 (300)
T COG2264         149 TSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGA-KKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPEN  227 (300)
T ss_pred             HHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCC-ceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhccc
Confidence            3334445544446789999999999999999998743 36999999 888888876  2222    2233333333 22 


Q ss_pred             CCccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250          172 SPAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI  217 (259)
Q Consensus       172 ~~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~  217 (259)
                      ..||+|+.+ +|=    +-.+++...+.+.++|   ||++++.-..
T Consensus       228 ~~~DvIVAN-ILA----~vl~~La~~~~~~lkp---gg~lIlSGIl  265 (300)
T COG2264         228 GPFDVIVAN-ILA----EVLVELAPDIKRLLKP---GGRLILSGIL  265 (300)
T ss_pred             CcccEEEeh-hhH----HHHHHHHHHHHHHcCC---CceEEEEeeh
Confidence            259988765 331    2345788999999999   8887776643

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=98.73  E-value=6.6e-08  Score=83.45  Aligned_cols=104  Identities=13%  Similarity=0.115  Sum_probs=69.8

Q ss_pred             HHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-CCCCcc
Q 041250          104 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AISPAY  175 (259)
Q Consensus       104 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~~~D  175 (259)
                      .++.+.....+..+|||||||+|.+++..++... -+++++|+ |.+++.|++      ..+++.+.  ...+ ...+||
T Consensus       151 cl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA-~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~~~~~~~d  227 (295)
T PF06325_consen  151 CLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGA-KKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSEDLVEGKFD  227 (295)
T ss_dssp             HHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTB-SEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSCTCCS-EE
T ss_pred             HHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--EecccccccCC
Confidence            3444332234567999999999999999998743 37999999 888888876      45677653  1111 224699


Q ss_pred             EEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 041250          176 AVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIK  218 (259)
Q Consensus       176 ~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~  218 (259)
                      +|+.+     .-.+-...+...+.+.|+|   ||.+++.-...
T Consensus       228 lvvAN-----I~~~vL~~l~~~~~~~l~~---~G~lIlSGIl~  262 (295)
T PF06325_consen  228 LVVAN-----ILADVLLELAPDIASLLKP---GGYLILSGILE  262 (295)
T ss_dssp             EEEEE-----S-HHHHHHHHHHCHHHEEE---EEEEEEEEEEG
T ss_pred             EEEEC-----CCHHHHHHHHHHHHHhhCC---CCEEEEccccH
Confidence            98865     2224456788889999999   78777655443

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=98.72  E-value=5.6e-08  Score=79.99  Aligned_cols=101  Identities=14%  Similarity=0.219  Sum_probs=74.8

Q ss_pred             HHHHhcccccCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCCCC---
Q 041250          103 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAIS---  172 (259)
Q Consensus       103 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~~---  172 (259)
                      .+++.++  +.+..+|||||||+|..+..+++.. +..+++.+|. +...+.|++     ...+|+++.+|....++   
T Consensus        63 ~~l~~L~--l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~a  140 (209)
T PF01135_consen   63 RMLEALD--LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEA  140 (209)
T ss_dssp             HHHHHTT--C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG-
T ss_pred             HHHHHHh--cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccCC
Confidence            3555666  7778999999999999999999874 5557899998 888888887     46699999999987544   


Q ss_pred             CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          173 PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       173 ~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      .||.|++.......|.        .+.+.|++   ||++++--.
T Consensus       141 pfD~I~v~~a~~~ip~--------~l~~qL~~---gGrLV~pi~  173 (209)
T PF01135_consen  141 PFDRIIVTAAVPEIPE--------ALLEQLKP---GGRLVAPIG  173 (209)
T ss_dssp             SEEEEEESSBBSS--H--------HHHHTEEE---EEEEEEEES
T ss_pred             CcCEEEEeeccchHHH--------HHHHhcCC---CcEEEEEEc
Confidence            5999999887754443        35666899   898877443

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.71  E-value=2.3e-07  Score=78.87  Aligned_cols=137  Identities=9%  Similarity=0.135  Sum_probs=98.7

Q ss_pred             chhhcCchHHHHHHHHHHhcch-h---------hhHHHHHhccccc-CCCCeEEEecCCchH----HHHHHHHHCC----
Q 041250           77 EYAGDESKLNNFFNEAMASDAR-L---------ATSVMIQKCKNVF-EGLNSLVDVGGGTGT----AAKAIAKAFP----  137 (259)
Q Consensus        77 ~~l~~~~~~~~~f~~~m~~~~~-~---------~~~~~~~~~~~~~-~~~~~vlDvGgG~G~----~~~~l~~~~p----  137 (259)
                      ..+..+++..+.|-.+|..... +         ....+++.+-... .+.-+|.-+||++|.    +++.+.+..|    
T Consensus        48 ~~l~~~~~e~~~~l~~ltin~T~FFR~~~~f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~  127 (268)
T COG1352          48 NLLESDSEELQAFLDALTINVTEFFRDPEHFEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAG  127 (268)
T ss_pred             HHHhCCHHHHHHHHHHhhhccchhccCcHHHHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccC
Confidence            3455667777777766663222 1         1122222221001 147799999999995    4555566675    


Q ss_pred             -CCeEEEeec-hHHHhhccc----------------------------------CCCCeEEEeCCCCCCC--C-CccEEe
Q 041250          138 -KLECTCFDL-PHVVNGLES----------------------------------DLVNLKYVGGDMFKAI--S-PAYAVL  178 (259)
Q Consensus       138 -~~~~~~~D~-~~~~~~a~~----------------------------------~~~ri~~~~~d~~~~~--~-~~D~~~  178 (259)
                       .+++++.|+ ..+++.|+.                                  ....|.|..+|.+++.  + ++|+|+
T Consensus       128 ~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~If  207 (268)
T COG1352         128 FRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIF  207 (268)
T ss_pred             CceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEE
Confidence             478999999 788888875                                  1247899999999943  4 499999


Q ss_pred             ehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          179 LKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       179 ~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      +++||-+++.+...+++++.++.|+|   ||.|++-..
T Consensus       208 CRNVLIYFd~~~q~~il~~f~~~L~~---gG~LflG~s  242 (268)
T COG1352         208 CRNVLIYFDEETQERILRRFADSLKP---GGLLFLGHS  242 (268)
T ss_pred             EcceEEeeCHHHHHHHHHHHHHHhCC---CCEEEEccC
Confidence            99999999999999999999999999   898888654

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=98.70  E-value=4e-07  Score=76.44  Aligned_cols=96  Identities=11%  Similarity=0.101  Sum_probs=75.2

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCC---------CCCc
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKA---------ISPA  174 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~---------~~~~  174 (259)
                      ..+..+|||||||+|.-+..+++..| +.+++.+|. ++.++.|++      ..++|+++.+|..+.         .+.|
T Consensus        66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f  145 (234)
T PLN02781         66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF  145 (234)
T ss_pred             HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence            45688999999999999999998765 679999999 888888876      457999999999762         1259


Q ss_pred             cEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250          175 YAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKD  215 (259)
Q Consensus       175 D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e  215 (259)
                      |++++-.     ....-..++..+.+.|+|   ||.|++-+
T Consensus       146 D~VfiDa-----~k~~y~~~~~~~~~ll~~---GG~ii~dn  178 (234)
T PLN02781        146 DFAFVDA-----DKPNYVHFHEQLLKLVKV---GGIIAFDN  178 (234)
T ss_pred             CEEEECC-----CHHHHHHHHHHHHHhcCC---CeEEEEEc
Confidence            9998742     234445788999999999   77655433

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=98.69  E-value=1.9e-07  Score=85.22  Aligned_cols=105  Identities=12%  Similarity=0.104  Sum_probs=79.0

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCCC---C-C-CccEEeehh
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFKA---I-S-PAYAVLLKW  181 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~~---~-~-~~D~~~~~~  181 (259)
                      .....+|||+|||+|..+..+++..++.+++++|+ +.++..+++    ..-+++++.+|..+.   . + .||.|++.-
T Consensus       242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~  321 (427)
T PRK10901        242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDA  321 (427)
T ss_pred             CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECC
Confidence            45567999999999999999999988789999999 888888776    333578999999862   1 2 499998532


Q ss_pred             h------hc-------cCChHH-------HHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250          182 I------LL-------DWNDEE-------CVKILKKCKEAITRDGKKRKVIIKDMIKE  219 (259)
Q Consensus       182 v------lh-------~~~d~~-------~~~il~~~~~~L~p~~~gg~lli~e~~~~  219 (259)
                      .      +.       .+..++       ..++|+++.+.|+|   ||++++......
T Consensus       322 Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~Lkp---GG~lvystcs~~  376 (427)
T PRK10901        322 PCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKP---GGTLLYATCSIL  376 (427)
T ss_pred             CCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCCC
Confidence            1      11       122221       24799999999999   999988775443

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=98.69  E-value=8.8e-08  Score=84.16  Aligned_cols=99  Identities=14%  Similarity=0.121  Sum_probs=73.4

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccC---------------CCCeEEEeCCCCCC-----C-
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESD---------------LVNLKYVGGDMFKA-----I-  171 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------------~~ri~~~~~d~~~~-----~-  171 (259)
                      +..+|||+|||.|.-+.-..+..+ -.++++|+ +..++.|+++               .-...|+.+|.+..     + 
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~i-~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~  140 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAKI-KHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP  140 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred             CCCeEEEecCCCchhHHHHHhcCC-CEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence            568999999999988888777643 26999999 7777777651               13556788888752     1 


Q ss_pred             -C--CccEEeehhhhccC--ChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          172 -S--PAYAVLLKWILLDW--NDEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       172 -~--~~D~~~~~~vlh~~--~d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                       +  .||+|.+...+|+.  +.+.+..+|+++...|+|   ||.++.+-+
T Consensus       141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~---GG~FIgT~~  187 (331)
T PF03291_consen  141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKP---GGYFIGTTP  187 (331)
T ss_dssp             STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred             ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCC---CCEEEEEec
Confidence             2  59999999999974  567788899999999999   887776654

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=98.67  E-value=2.3e-07  Score=85.16  Aligned_cols=104  Identities=15%  Similarity=0.194  Sum_probs=77.8

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCC---CC-CccEEeeh
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKA---IS-PAYAVLLK  180 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~---~~-~~D~~~~~  180 (259)
                      ..+..+|||+|||+|..+..+++.. |+.+++++|+ +..++.+++     ...+++++.+|+.+.   ++ .||+|++.
T Consensus       248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D  327 (444)
T PRK14902        248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVD  327 (444)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEc
Confidence            4556799999999999999999986 6789999999 888877765     335699999999762   33 59999874


Q ss_pred             hhh------c-------cCChHH-------HHHHHHHHHHhcccCCCCcEEEEEeeee
Q 041250          181 WIL------L-------DWNDEE-------CVKILKKCKEAITRDGKKRKVIIKDMIK  218 (259)
Q Consensus       181 ~vl------h-------~~~d~~-------~~~il~~~~~~L~p~~~gg~lli~e~~~  218 (259)
                      --.      .       .++.++       ..++|+++.+.|+|   ||+++......
T Consensus       328 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp---GG~lvystcs~  382 (444)
T PRK14902        328 APCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKK---GGILVYSTCTI  382 (444)
T ss_pred             CCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCC---CCEEEEEcCCC
Confidence            221      1       122222       24689999999999   99988665544

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=98.67  E-value=1.7e-07  Score=85.60  Aligned_cols=112  Identities=12%  Similarity=0.111  Sum_probs=82.2

Q ss_pred             HHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----C--CCCeEEEeCCCCC-CC--C-
Q 041250          104 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----D--LVNLKYVGGDMFK-AI--S-  172 (259)
Q Consensus       104 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~--~~ri~~~~~d~~~-~~--~-  172 (259)
                      +...++  .....+|||+|||+|..+..+++..|+.+++++|+ +..++.+++    .  ..++.+..+|... +.  + 
T Consensus       230 ~~~~L~--~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~  307 (426)
T TIGR00563       230 VATWLA--PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAEN  307 (426)
T ss_pred             HHHHhC--CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccc
Confidence            344445  55568999999999999999999988789999999 788877765    1  2234557778765 22  2 


Q ss_pred             -CccEEeeh------hhhccCCh-------HH-------HHHHHHHHHHhcccCCCCcEEEEEeeeecC
Q 041250          173 -PAYAVLLK------WILLDWND-------EE-------CVKILKKCKEAITRDGKKRKVIIKDMIKEN  220 (259)
Q Consensus       173 -~~D~~~~~------~vlh~~~d-------~~-------~~~il~~~~~~L~p~~~gg~lli~e~~~~~  220 (259)
                       .||.|++-      .+++..++       ++       ..++|.++++.|+|   ||+++.....+..
T Consensus       308 ~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lkp---gG~lvystcs~~~  373 (426)
T TIGR00563       308 EQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKT---GGTLVYATCSVLP  373 (426)
T ss_pred             cccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeCCCCh
Confidence             49999862      35554443       11       36799999999999   9999988876643

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.64  E-value=3.6e-07  Score=74.35  Aligned_cols=98  Identities=13%  Similarity=0.199  Sum_probs=79.0

Q ss_pred             HHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCCCC---Cc
Q 041250          104 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAIS---PA  174 (259)
Q Consensus       104 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~~---~~  174 (259)
                      +++.++  ++...+||+||||+|..+.-+++..-  +++.+++ ++..+.|++     ...+|.++.+|-..-+|   .|
T Consensus        64 m~~~L~--~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aPy  139 (209)
T COG2518          64 MLQLLE--LKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAPY  139 (209)
T ss_pred             HHHHhC--CCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCCc
Confidence            445555  77789999999999999999999754  8999998 888888887     45679999999999555   59


Q ss_pred             cEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          175 YAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       175 D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      |.|+..-..-..|+.        +.+.|+|   ||++++-.-
T Consensus       140 D~I~Vtaaa~~vP~~--------Ll~QL~~---gGrlv~PvG  170 (209)
T COG2518         140 DRIIVTAAAPEVPEA--------LLDQLKP---GGRLVIPVG  170 (209)
T ss_pred             CEEEEeeccCCCCHH--------HHHhccc---CCEEEEEEc
Confidence            999998777666652        4556899   999988765

>PRK03612 spermidine synthase; Provisional

Probab=98.64  E-value=1.6e-07  Score=87.64  Aligned_cols=99  Identities=17%  Similarity=0.274  Sum_probs=75.5

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCC-CeEEEeec-hHHHhhccc------------CCCCeEEEeCCCCC---CCC-Cc
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPK-LECTCFDL-PHVVNGLES------------DLVNLKYVGGDMFK---AIS-PA  174 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------------~~~ri~~~~~d~~~---~~~-~~  174 (259)
                      +++.+|||||||+|..+.++++ +|. .+++++|+ |++++.+++            ..+|++++.+|.++   ..+ +|
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f  374 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF  374 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence            4578999999999999999986 565 68999999 999998886            13699999999887   223 59


Q ss_pred             cEEeehhhhccCCh---HHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250          175 YAVLLKWILLDWND---EECVKILKKCKEAITRDGKKRKVIIKD  215 (259)
Q Consensus       175 D~~~~~~vlh~~~d---~~~~~il~~~~~~L~p~~~gg~lli~e  215 (259)
                      |+|++...-+..+.   -...++++++++.|+|   ||.+++.-
T Consensus       375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~p---gG~lv~~~  415 (521)
T PRK03612        375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAP---DGLLVVQS  415 (521)
T ss_pred             CEEEEeCCCCCCcchhccchHHHHHHHHHhcCC---CeEEEEec
Confidence            99988743222111   1124689999999999   88876653

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.64  E-value=2.3e-07  Score=75.68  Aligned_cols=96  Identities=14%  Similarity=0.261  Sum_probs=68.8

Q ss_pred             eEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCC----CC--CccEEeehhhhc
Q 041250          117 SLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKA----IS--PAYAVLLKWILL  184 (259)
Q Consensus       117 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~----~~--~~D~~~~~~vlh  184 (259)
                      .+||||||.|.++..+++.+|+..++++|+ ...+..+.+     ...++.++.+|...-    ++  ..|-+++.+-= 
T Consensus        20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD-   98 (195)
T PF02390_consen   20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPD-   98 (195)
T ss_dssp             EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred             eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCC-
Confidence            899999999999999999999999999998 555554433     789999999998871    22  35655554211 


Q ss_pred             cCChH-------HHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          185 DWNDE-------ECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       185 ~~~d~-------~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      -|+..       -...+|+.+++.|+|   ||.|.+..-
T Consensus        99 PWpK~rH~krRl~~~~fl~~~~~~L~~---gG~l~~~TD  134 (195)
T PF02390_consen   99 PWPKKRHHKRRLVNPEFLELLARVLKP---GGELYFATD  134 (195)
T ss_dssp             ---SGGGGGGSTTSHHHHHHHHHHEEE---EEEEEEEES
T ss_pred             CCcccchhhhhcCCchHHHHHHHHcCC---CCEEEEEeC
Confidence            13221       124689999999999   898877654

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=98.63  E-value=4.2e-07  Score=83.39  Aligned_cols=105  Identities=15%  Similarity=0.211  Sum_probs=78.4

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCCCC--CccEEeehh-
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAIS--PAYAVLLKW-  181 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~~--~~D~~~~~~-  181 (259)
                      .....+|||+|||+|..+..+++..+ ..+++++|+ +.+++.+++     ...+|+++.+|..+..+  .||+|++-- 
T Consensus       248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~D~P  327 (445)
T PRK14904        248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILLDAP  327 (445)
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEEcCC
Confidence            34557999999999999999988653 468999999 888887765     33579999999987323  599998621 


Q ss_pred             -----hh-------ccCChHH-------HHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250          182 -----IL-------LDWNDEE-------CVKILKKCKEAITRDGKKRKVIIKDMIKE  219 (259)
Q Consensus       182 -----vl-------h~~~d~~-------~~~il~~~~~~L~p~~~gg~lli~e~~~~  219 (259)
                           ++       +.++.++       ..++|.++.+.|+|   ||+++.......
T Consensus       328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkp---gG~lvystcs~~  381 (445)
T PRK14904        328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKP---GGVLVYATCSIE  381 (445)
T ss_pred             CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeCCCC
Confidence                 11       2233332       23689999999999   999888876554

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=98.63  E-value=4.5e-07  Score=76.51  Aligned_cols=136  Identities=21%  Similarity=0.293  Sum_probs=81.8

Q ss_pred             CCCeEEEecCCchH--HHHHHHH-HCCCCeEEEeec-hHHHhhccc---CCCC--eEEEeCCCCCC-----CC---C-cc
Q 041250          114 GLNSLVDVGGGTGT--AAKAIAK-AFPKLECTCFDL-PHVVNGLES---DLVN--LKYVGGDMFKA-----IS---P-AY  175 (259)
Q Consensus       114 ~~~~vlDvGgG~G~--~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~---~~~r--i~~~~~d~~~~-----~~---~-~D  175 (259)
                      +...+||||||--.  ...++++ ..|+.+++-+|. |-++..++.   ..++  ..++.+|+.+|     .|   . .|
T Consensus        68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD  147 (267)
T PF04672_consen   68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD  147 (267)
T ss_dssp             ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred             CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence            67899999999542  4555555 579999999999 888888887   3344  89999999984     12   1 23


Q ss_pred             -----EEeehhhhccCCh-HHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccCH
Q 041250          176 -----AVLLKWILLDWND-EECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDE  249 (259)
Q Consensus       176 -----~~~~~~vlh~~~d-~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~  249 (259)
                           .+++..+||+.+| ++...+++.+++.|.|   |+.|.|.....+....     ......+++-........||.
T Consensus       148 ~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lap---GS~L~ish~t~d~~p~-----~~~~~~~~~~~~~~~~~~Rs~  219 (267)
T PF04672_consen  148 FDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAP---GSYLAISHATDDGAPE-----RAEALEAVYAQAGSPGRPRSR  219 (267)
T ss_dssp             TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-T---T-EEEEEEEB-TTSHH-----HHHHHHHHHHHCCS----B-H
T ss_pred             CCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCC---CceEEEEecCCCCCHH-----HHHHHHHHHHcCCCCceecCH
Confidence                 6888999999987 7788999999999999   9999888886533211     112233443333457789999


Q ss_pred             HHHHHHHh
Q 041250          250 KEWAKIFA  257 (259)
Q Consensus       250 ~e~~~ll~  257 (259)
                      +|+.++|.
T Consensus       220 ~ei~~~f~  227 (267)
T PF04672_consen  220 EEIAAFFD  227 (267)
T ss_dssp             HHHHHCCT
T ss_pred             HHHHHHcC
Confidence            99999875

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>PLN02672 methionine S-methyltransferase

Probab=98.59  E-value=2.9e-07  Score=91.32  Aligned_cols=99  Identities=16%  Similarity=0.122  Sum_probs=75.0

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---C------------------CCCeEEEeCCCCCCCC
Q 041250          115 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---D------------------LVNLKYVGGDMFKAIS  172 (259)
Q Consensus       115 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~------------------~~ri~~~~~d~~~~~~  172 (259)
                      ..+|+|+|||+|.+++.+++++|+.+++++|+ |.+++.|++   .                  .+|++|+.+|+++..+
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~  198 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR  198 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence            35899999999999999999999999999999 888888765   1                  2589999999998443


Q ss_pred             ----CccEEeehh--hhcc----CC----------------------------h--HHHHHHHHHHHHhcccCCCCcEEE
Q 041250          173 ----PAYAVLLKW--ILLD----WN----------------------------D--EECVKILKKCKEAITRDGKKRKVI  212 (259)
Q Consensus       173 ----~~D~~~~~~--vlh~----~~----------------------------d--~~~~~il~~~~~~L~p~~~gg~ll  212 (259)
                          ++|+|+.+-  +...    .+                            |  +-.++|++.+.+.|+|   ||. +
T Consensus       199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~p---gG~-l  274 (1082)
T PLN02672        199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKP---MGI-M  274 (1082)
T ss_pred             ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccC---CCE-E
Confidence                489988763  2110    00                            0  1126788888899999   775 5


Q ss_pred             EEeee
Q 041250          213 IKDMI  217 (259)
Q Consensus       213 i~e~~  217 (259)
                      ++|..
T Consensus       275 ~lEiG  279 (1082)
T PLN02672        275 IFNMG  279 (1082)
T ss_pred             EEEEC
Confidence            57764

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=98.57  E-value=6.2e-07  Score=82.03  Aligned_cols=105  Identities=15%  Similarity=0.123  Sum_probs=79.5

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-C----C-C-CccEE
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-A----I-S-PAYAV  177 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~----~-~-~~D~~  177 (259)
                      .....+|||+|||+|..+..+++.. +..+++++|+ +..++.+++     ...+|+++.+|..+ +    . + .||.|
T Consensus       250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V  329 (434)
T PRK14901        250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRI  329 (434)
T ss_pred             CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEE
Confidence            4556899999999999999999975 4568999998 788877765     34579999999876 3    1 1 49999


Q ss_pred             eeh------hhhccCCh-------HH-------HHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250          178 LLK------WILLDWND-------EE-------CVKILKKCKEAITRDGKKRKVIIKDMIKE  219 (259)
Q Consensus       178 ~~~------~vlh~~~d-------~~-------~~~il~~~~~~L~p~~~gg~lli~e~~~~  219 (259)
                      ++-      .+++..++       ++       ..++|+++.+.|+|   ||+|+.....+.
T Consensus       330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkp---gG~lvystcsi~  388 (434)
T PRK14901        330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKP---GGTLVYATCTLH  388 (434)
T ss_pred             EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCCC
Confidence            973      24443332       22       35899999999999   999888775543

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.56  E-value=3.2e-07  Score=75.25  Aligned_cols=112  Identities=14%  Similarity=0.187  Sum_probs=68.7

Q ss_pred             HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc--------------CCCCeEEEeCC
Q 041250          102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES--------------DLVNLKYVGGD  166 (259)
Q Consensus       102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------------~~~ri~~~~~d  166 (259)
                      ..+++.+.  +.....++|+|||.|......+...+=-+.+|+++ +...+.|+.              ...++++..+|
T Consensus        32 ~~il~~~~--l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gd  109 (205)
T PF08123_consen   32 SKILDELN--LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGD  109 (205)
T ss_dssp             HHHHHHTT----TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-
T ss_pred             HHHHHHhC--CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccC
Confidence            34566666  67788999999999999999888775445999998 655554432              35788999999


Q ss_pred             CCC-C-----CCCccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCC
Q 041250          167 MFK-A-----ISPAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENR  221 (259)
Q Consensus       167 ~~~-~-----~~~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~  221 (259)
                      |.+ +     +.++|+|++++.+  |+++... -|++....|++   |.+|+-...+.+..
T Consensus       110 fl~~~~~~~~~s~AdvVf~Nn~~--F~~~l~~-~L~~~~~~lk~---G~~IIs~~~~~~~~  164 (205)
T PF08123_consen  110 FLDPDFVKDIWSDADVVFVNNTC--FDPDLNL-ALAELLLELKP---GARIISTKPFCPRR  164 (205)
T ss_dssp             TTTHHHHHHHGHC-SEEEE--TT--T-HHHHH-HHHHHHTTS-T---T-EEEESS-SS-TT
T ss_pred             ccccHhHhhhhcCCCEEEEeccc--cCHHHHH-HHHHHHhcCCC---CCEEEECCCcCCCC
Confidence            998 3     2369999999876  6665444 44777788998   77777666655554

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=98.56  E-value=8.3e-07  Score=75.91  Aligned_cols=106  Identities=12%  Similarity=0.183  Sum_probs=77.9

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-C--CCCccEEeehh
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-A--ISPAYAVLLKW  181 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~--~~~~D~~~~~~  181 (259)
                      .....+|||+|||+|..+..+++..+ ..+++++|+ +..++.+++     ...+++++.+|... +  .+.||.|++--
T Consensus        69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~  148 (264)
T TIGR00446        69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDA  148 (264)
T ss_pred             CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence            45567999999999999999998764 458999999 888877765     33678999999765 2  23599998632


Q ss_pred             ------hh-------ccCChHHH-------HHHHHHHHHhcccCCCCcEEEEEeeeecC
Q 041250          182 ------IL-------LDWNDEEC-------VKILKKCKEAITRDGKKRKVIIKDMIKEN  220 (259)
Q Consensus       182 ------vl-------h~~~d~~~-------~~il~~~~~~L~p~~~gg~lli~e~~~~~  220 (259)
                            ++       +.|.++..       .++|+++.+.|+|   ||+|+.....+..
T Consensus       149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkp---gG~lvYstcs~~~  204 (264)
T TIGR00446       149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKP---GGVLVYSTCSLEP  204 (264)
T ss_pred             CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCCCh
Confidence                  11       12443322       4699999999999   8988766654443

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=98.55  E-value=7.9e-07  Score=81.18  Aligned_cols=106  Identities=13%  Similarity=0.124  Sum_probs=78.8

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-C-C-C-CccEEeeh
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-A-I-S-PAYAVLLK  180 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~-~-~-~~D~~~~~  180 (259)
                      ..+..+|||+|||+|..+..+++.. ++.+++.+|+ +..++.+++     ...+++++.+|..+ + . + .||.|++-
T Consensus       235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D  314 (431)
T PRK14903        235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVD  314 (431)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence            4566799999999999999999876 5679999999 888887766     33568999999876 3 2 2 49999863


Q ss_pred             h------hhc-------cCChH-------HHHHHHHHHHHhcccCCCCcEEEEEeeeecC
Q 041250          181 W------ILL-------DWNDE-------ECVKILKKCKEAITRDGKKRKVIIKDMIKEN  220 (259)
Q Consensus       181 ~------vlh-------~~~d~-------~~~~il~~~~~~L~p~~~gg~lli~e~~~~~  220 (259)
                      -      ++.       .++.+       ...++|.++++.|+|   ||.++.....+..
T Consensus       315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp---GG~LvYsTCs~~~  371 (431)
T PRK14903        315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEK---GGILLYSTCTVTK  371 (431)
T ss_pred             CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEECCCCh
Confidence            2      222       22222       225789999999999   8987777665543

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.54  E-value=6.2e-07  Score=76.42  Aligned_cols=82  Identities=16%  Similarity=0.275  Sum_probs=63.6

Q ss_pred             hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEeCCCCC-CCCCcc
Q 041250          101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFK-AISPAY  175 (259)
Q Consensus       101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~-~~~~~D  175 (259)
                      ...+++.++  ..+..+|||||||+|.++..++++.  .+++++|+ +.+++.+++   ..++++++.+|+.+ +++.+|
T Consensus        18 ~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~d   93 (258)
T PRK14896         18 VDRIVEYAE--DTDGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEFN   93 (258)
T ss_pred             HHHHHHhcC--CCCcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhce
Confidence            345566555  5667899999999999999999983  57999999 788887776   24789999999998 677788


Q ss_pred             EEeehhhhccCC
Q 041250          176 AVLLKWILLDWN  187 (259)
Q Consensus       176 ~~~~~~vlh~~~  187 (259)
                      .|+.+-. ++.+
T Consensus        94 ~Vv~NlP-y~i~  104 (258)
T PRK14896         94 KVVSNLP-YQIS  104 (258)
T ss_pred             EEEEcCC-cccC
Confidence            7766533 3444

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=98.54  E-value=3e-07  Score=75.66  Aligned_cols=98  Identities=17%  Similarity=0.227  Sum_probs=69.3

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCC------CeEEEeCCCCCCC--C-CccEEeehhh
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLV------NLKYVGGDMFKAI--S-PAYAVLLKWI  182 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~------ri~~~~~d~~~~~--~-~~D~~~~~~v  182 (259)
                      .+...++|||||+|..++.++..+.  ++|+.|. +.+++.+++...      ..++...++.+-.  + +.|+|++...
T Consensus        32 ~~h~~a~DvG~G~Gqa~~~iae~~k--~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa  109 (261)
T KOG3010|consen   32 EGHRLAWDVGTGNGQAARGIAEHYK--EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQA  109 (261)
T ss_pred             CCcceEEEeccCCCcchHHHHHhhh--hheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhh
Confidence            3445899999999977777777654  5899999 899999886221      1222223333311  2 4999999999


Q ss_pred             hccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250          183 LLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI  217 (259)
Q Consensus       183 lh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~  217 (259)
                      +|-++-+   ++++.++++|++.  ||.+.+..+.
T Consensus       110 ~HWFdle---~fy~~~~rvLRk~--Gg~iavW~Y~  139 (261)
T KOG3010|consen  110 VHWFDLE---RFYKEAYRVLRKD--GGLIAVWNYN  139 (261)
T ss_pred             HHhhchH---HHHHHHHHHcCCC--CCEEEEEEcc
Confidence            9966654   6899999999982  6677666553

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.53  E-value=3.6e-07  Score=78.46  Aligned_cols=69  Identities=16%  Similarity=0.289  Sum_probs=55.8

Q ss_pred             hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc--CCCCeEEEeCCCCC-CCCC
Q 041250          101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES--DLVNLKYVGGDMFK-AISP  173 (259)
Q Consensus       101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~ri~~~~~d~~~-~~~~  173 (259)
                      ...+++.++  .....+|||||||+|.++..++++.+  +++++|+ +.+++.+++  ..++++++.+|+.+ +.+.
T Consensus        31 ~~~i~~~l~--~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~  103 (272)
T PRK00274         31 LDKIVDAAG--PQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSE  103 (272)
T ss_pred             HHHHHHhcC--CCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHH
Confidence            344556555  56678999999999999999999976  7899999 888888876  23799999999988 5444

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.53  E-value=5.7e-07  Score=76.42  Aligned_cols=86  Identities=14%  Similarity=0.241  Sum_probs=64.2

Q ss_pred             hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEeCCCCC-CCCCcc
Q 041250          101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFK-AISPAY  175 (259)
Q Consensus       101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~-~~~~~D  175 (259)
                      ...+++.++  ..+..+|||||||+|.++..++++.+.  ++++|. +.+++.+++   ..++++++.+|+.+ +.+.+|
T Consensus        18 ~~~i~~~~~--~~~~~~VLEiG~G~G~lt~~L~~~~~~--v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~~~d   93 (253)
T TIGR00755        18 IQKIVEAAN--VLEGDVVLEIGPGLGALTEPLLKRAKK--VTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLPDFP   93 (253)
T ss_pred             HHHHHHhcC--CCCcCEEEEeCCCCCHHHHHHHHhCCc--EEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChhHcC
Confidence            345566666  666789999999999999999999864  888998 788877765   24789999999998 555555


Q ss_pred             --EEeehhhhccCChHH
Q 041250          176 --AVLLKWILLDWNDEE  190 (259)
Q Consensus       176 --~~~~~~vlh~~~d~~  190 (259)
                        .+++++.-++++.+.
T Consensus        94 ~~~~vvsNlPy~i~~~i  110 (253)
T TIGR00755        94 KQLKVVSNLPYNISSPL  110 (253)
T ss_pred             CcceEEEcCChhhHHHH
Confidence              455555555555433

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.50  E-value=4.9e-07  Score=72.37  Aligned_cols=102  Identities=19%  Similarity=0.160  Sum_probs=68.8

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhccc--------CCCCeEEEeCCCCCCC------C-CccE
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES--------DLVNLKYVGGDMFKAI------S-PAYA  176 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~--------~~~ri~~~~~d~~~~~------~-~~D~  176 (259)
                      .....+||++|||+|..++.+++..+..+++..|.+++++..+.        ...++++...|+.++.      + .||+
T Consensus        43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~  122 (173)
T PF10294_consen   43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV  122 (173)
T ss_dssp             GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred             hcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence            45568999999999999999999977789999999777776654        2578899998886621      2 4999


Q ss_pred             EeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 041250          177 VLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIK  218 (259)
Q Consensus       177 ~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~  218 (259)
                      |+.+.++|+  ++....+++-+.+.++|   +|.+++.-...
T Consensus       123 IlasDv~Y~--~~~~~~L~~tl~~ll~~---~~~vl~~~~~R  159 (173)
T PF10294_consen  123 ILASDVLYD--EELFEPLVRTLKRLLKP---NGKVLLAYKRR  159 (173)
T ss_dssp             EEEES--S---GGGHHHHHHHHHHHBTT----TTEEEEEE-S
T ss_pred             EEEecccch--HHHHHHHHHHHHHHhCC---CCEEEEEeCEe
Confidence            999999975  45567899999999999   77777776654

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=98.49  E-value=2e-06  Score=71.63  Aligned_cols=118  Identities=15%  Similarity=0.219  Sum_probs=94.8

Q ss_pred             HHHhcchh----hhHHHHHhcccccCCCCeEEEecCCchHHHHHHHH-HCCCCeEEEeec-hHHHhhccc------CCCC
Q 041250           92 AMASDARL----ATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAK-AFPKLECTCFDL-PHVVNGLES------DLVN  159 (259)
Q Consensus        92 ~m~~~~~~----~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~------~~~r  159 (259)
                      .|...++.    .+..|+...+  +....+|+|.|.|+|.++..|+. -.|..+++.+|. ++..+.|++      ..++
T Consensus        70 ~~~R~tQiIyPKD~~~I~~~~g--i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~  147 (256)
T COG2519          70 SMKRRTQIIYPKDAGYIVARLG--ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDR  147 (256)
T ss_pred             hCcCCCceecCCCHHHHHHHcC--CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccc
Confidence            35555443    2456777777  88899999999999999999997 568889999998 888888877      5677


Q ss_pred             eEEEeCCCCC-CCC-CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCC
Q 041250          160 LKYVGGDMFK-AIS-PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENR  221 (259)
Q Consensus       160 i~~~~~d~~~-~~~-~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~  221 (259)
                      +++..+|..+ ..+ .+|++++     |.++.  ...+.++.++|+|   ||.+.+.-+..+.-
T Consensus       148 v~~~~~Dv~~~~~~~~vDav~L-----Dmp~P--W~~le~~~~~Lkp---gg~~~~y~P~veQv  201 (256)
T COG2519         148 VTLKLGDVREGIDEEDVDAVFL-----DLPDP--WNVLEHVSDALKP---GGVVVVYSPTVEQV  201 (256)
T ss_pred             eEEEeccccccccccccCEEEE-----cCCCh--HHHHHHHHHHhCC---CcEEEEEcCCHHHH
Confidence            9999999998 333 5998877     47764  5799999999999   99998888766653

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=98.45  E-value=2.1e-06  Score=69.65  Aligned_cols=125  Identities=16%  Similarity=0.208  Sum_probs=73.4

Q ss_pred             chhhcCchHHHHHHHHHH----hcchhhhHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhh
Q 041250           77 EYAGDESKLNNFFNEAMA----SDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNG  152 (259)
Q Consensus        77 ~~l~~~~~~~~~f~~~m~----~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~  152 (259)
                      +.++++|+.-+.|+...+    .|...-...+++.+.. .++...|.|+|||.+.++..+..   ..++..+|+-..   
T Consensus        32 ~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~-~~~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva~---  104 (219)
T PF05148_consen   32 KLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLKK-RPKSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVAP---  104 (219)
T ss_dssp             HHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCT-S-TTS-EEEES-TT-HHHHH--S------EEEEESS-S---
T ss_pred             HHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHh-cCCCEEEEECCCchHHHHHhccc---CceEEEeeccCC---
Confidence            445678877666665444    3332233455555551 34567899999999999966542   357899997221   


Q ss_pred             cccCCCCeEEEeCCCCC-CCC--CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecC
Q 041250          153 LESDLVNLKYVGGDMFK-AIS--PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKEN  220 (259)
Q Consensus       153 a~~~~~ri~~~~~d~~~-~~~--~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~  220 (259)
                            +=.++..|+.. |++  ..|+++++-.|---+   -...++++.|+|+|   ||.|.|.|....-
T Consensus       105 ------n~~Vtacdia~vPL~~~svDv~VfcLSLMGTn---~~~fi~EA~RvLK~---~G~L~IAEV~SRf  163 (219)
T PF05148_consen  105 ------NPRVTACDIANVPLEDESVDVAVFCLSLMGTN---WPDFIREANRVLKP---GGILKIAEVKSRF  163 (219)
T ss_dssp             ------STTEEES-TTS-S--TT-EEEEEEES---SS----HHHHHHHHHHHEEE---EEEEEEEEEGGG-
T ss_pred             ------CCCEEEecCccCcCCCCceeEEEEEhhhhCCC---cHHHHHHHHheecc---CcEEEEEEecccC
Confidence                  22466789977 776  389999887774322   35789999999999   9999999985443

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases

Probab=98.44  E-value=1.5e-08  Score=63.65  Aligned_cols=45  Identities=42%  Similarity=0.696  Sum_probs=35.9

Q ss_pred             CHHHHHHHcCcchhhhcCC-CCCCHHHHHHHcC-CCcc---ccccceecc
Q 041250            1 MTLKCAFQLGIPDIINKHG-KPMTLNELVSALT-INLS---KTQCFFAQQ   45 (259)
Q Consensus         1 ~aL~~a~~l~lf~~L~~~~-~~~t~~elA~~~~-~~~~---~l~~ll~~~   45 (259)
                      |+|++|+||||||.|++.| ++.|++||+.++. .++.   .+.|++|.+
T Consensus         1 MaLk~aveLgI~dii~~~g~~~ls~~eia~~l~~~~p~~~~~L~RimR~L   50 (51)
T PF08100_consen    1 MALKCAVELGIPDIIHNAGGGPLSLSEIAARLPTSNPSAPPMLDRIMRLL   50 (51)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTS-BEHHHHHHTSTCT-TTHHHHHHHHHHHH
T ss_pred             CcHHHHHHcCcHHHHHHcCCCCCCHHHHHHHcCCCCcchHHHHHHHHHHh
Confidence            7999999999999999875 7999999999999 5444   456666654

It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.41  E-value=1.2e-06  Score=69.84  Aligned_cols=69  Identities=19%  Similarity=0.191  Sum_probs=56.2

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCCCCCCccEEeehhhhc
Q 041250          115 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFKAISPAYAVLLKWILL  184 (259)
Q Consensus       115 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~~~~~~D~~~~~~vlh  184 (259)
                      ..+|+|+|||+|.+++..+-..|. +++++|+ |++++.+++    ..+++.|+..|..+....+|.++++--+-
T Consensus        46 g~~V~DlG~GTG~La~ga~~lGa~-~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimNPPFG  119 (198)
T COG2263          46 GKTVLDLGAGTGILAIGAALLGAS-RVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMNPPFG  119 (198)
T ss_pred             CCEEEEcCCCcCHHHHHHHhcCCc-EEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEECCCCc
Confidence            568999999999999998888664 7999999 999998887    56799999999987555566666664443

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=98.39  E-value=1.1e-06  Score=75.26  Aligned_cols=95  Identities=17%  Similarity=0.238  Sum_probs=73.0

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCC-eEEEeech-HHHhhccc-------CCC----CeEEEeCCCCCC---------
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKL-ECTCFDLP-HVVNGLES-------DLV----NLKYVGGDMFKA---------  170 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~-~~~~~D~~-~~~~~a~~-------~~~----ri~~~~~d~~~~---------  170 (259)
                      +....++|+|||-|.-++..-++  ++ .++++|+. --|++|++       ...    .+.|+.+|-+..         
T Consensus       116 ~~~~~~~~LgCGKGGDLlKw~kA--gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~  193 (389)
T KOG1975|consen  116 KRGDDVLDLGCGKGGDLLKWDKA--GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFK  193 (389)
T ss_pred             ccccccceeccCCcccHhHhhhh--cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCC
Confidence            45567999999999998888776  34 58999994 44577766       112    468899988751         


Q ss_pred             CCCccEEeehhhhcc-C-ChHHHHHHHHHHHHhcccCCCCcEEE
Q 041250          171 ISPAYAVLLKWILLD-W-NDEECVKILKKCKEAITRDGKKRKVI  212 (259)
Q Consensus       171 ~~~~D~~~~~~vlh~-~-~d~~~~~il~~~~~~L~p~~~gg~ll  212 (259)
                      .|.||++.+..++|+ | +.+.+..+|+|+++.|+|   ||.++
T Consensus       194 dp~fDivScQF~~HYaFetee~ar~~l~Nva~~Lkp---GG~FI  234 (389)
T KOG1975|consen  194 DPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKP---GGVFI  234 (389)
T ss_pred             CCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCC---CcEEE
Confidence            234999999999997 4 457788899999999999   77554

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=98.38  E-value=1.4e-06  Score=71.25  Aligned_cols=98  Identities=13%  Similarity=0.110  Sum_probs=68.9

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCCC--C--CccEEeehhhh
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAI--S--PAYAVLLKWIL  183 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~--~--~~D~~~~~~vl  183 (259)
                      ...+|||+|||+|.++.+++.+.. .+++++|. +.+++.+++     ...+++++.+|+++..  .  .||+|++.--.
T Consensus        53 ~~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy  131 (199)
T PRK10909         53 VDARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF  131 (199)
T ss_pred             CCCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence            356899999999999998766653 58999998 888877766     3458999999998722  2  49999988765


Q ss_pred             ccCChHHHHHHHHHHHH--hcccCCCCcEEEEEeeeec
Q 041250          184 LDWNDEECVKILKKCKE--AITRDGKKRKVIIKDMIKE  219 (259)
Q Consensus       184 h~~~d~~~~~il~~~~~--~L~p~~~gg~lli~e~~~~  219 (259)
                      +.--.+   .+++.+..  .+.|    +.++++|....
T Consensus       132 ~~g~~~---~~l~~l~~~~~l~~----~~iv~ve~~~~  162 (199)
T PRK10909        132 RKGLLE---ETINLLEDNGWLAD----EALIYVESEVE  162 (199)
T ss_pred             CCChHH---HHHHHHHHCCCcCC----CcEEEEEecCC
Confidence            432223   34444444  3677    45677776443

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.38  E-value=2e-06  Score=74.52  Aligned_cols=89  Identities=16%  Similarity=0.305  Sum_probs=66.7

Q ss_pred             HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-CCCC
Q 041250          102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AISP  173 (259)
Q Consensus       102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~~  173 (259)
                      ..+++...  .....+|||||||+|.++..+++..  .+++++|+ +.+++.+++      ..++++++.+|+.+ +.+.
T Consensus        26 ~~Iv~~~~--~~~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~~  101 (294)
T PTZ00338         26 DKIVEKAA--IKPTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFPY  101 (294)
T ss_pred             HHHHHhcC--CCCcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcccc
Confidence            44555555  6667899999999999999999874  46899999 888887775      25789999999988 6667


Q ss_pred             ccEEeehhhhccCChHHHHHHH
Q 041250          174 AYAVLLKWILLDWNDEECVKIL  195 (259)
Q Consensus       174 ~D~~~~~~vlh~~~d~~~~~il  195 (259)
                      +|.++. +.-++++.....++|
T Consensus       102 ~d~Vva-NlPY~Istpil~~ll  122 (294)
T PTZ00338        102 FDVCVA-NVPYQISSPLVFKLL  122 (294)
T ss_pred             cCEEEe-cCCcccCcHHHHHHH
Confidence            886654 555555554444444

>PRK04148 hypothetical protein; Provisional

Probab=98.36  E-value=8.3e-06  Score=61.97  Aligned_cols=100  Identities=15%  Similarity=0.191  Sum_probs=70.5

Q ss_pred             HHHHHhcccccCCCCeEEEecCCchH-HHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCCCCC----Ccc
Q 041250          102 SVMIQKCKNVFEGLNSLVDVGGGTGT-AAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKAIS----PAY  175 (259)
Q Consensus       102 ~~~~~~~~~~~~~~~~vlDvGgG~G~-~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~~----~~D  175 (259)
                      ..+.+.+.  ..+..+++|||||+|. ++..|.+.  +..++++|+ |..++.+++  ..+.++.+|+|+|.+    ++|
T Consensus         6 ~~l~~~~~--~~~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~--~~~~~v~dDlf~p~~~~y~~a~   79 (134)
T PRK04148          6 EFIAENYE--KGKNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKK--LGLNAFVDDLFNPNLEIYKNAK   79 (134)
T ss_pred             HHHHHhcc--cccCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHH--hCCeEEECcCCCCCHHHHhcCC
Confidence            34555554  3345789999999996 77777765  578999999 888887774  357899999999644    589


Q ss_pred             EEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250          176 AVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI  217 (259)
Q Consensus       176 ~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~  217 (259)
                      ++...+     |..+...-+.++++...     .-++|.-..
T Consensus        80 liysir-----pp~el~~~~~~la~~~~-----~~~~i~~l~  111 (134)
T PRK04148         80 LIYSIR-----PPRDLQPFILELAKKIN-----VPLIIKPLS  111 (134)
T ss_pred             EEEEeC-----CCHHHHHHHHHHHHHcC-----CCEEEEcCC
Confidence            888763     44555666666776664     445555443

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=98.36  E-value=4.1e-07  Score=74.36  Aligned_cols=129  Identities=9%  Similarity=0.089  Sum_probs=86.0

Q ss_pred             hHHHHHHHHHHhcchhhhHHHH----HhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc--C
Q 041250           84 KLNNFFNEAMASDARLATSVMI----QKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES--D  156 (259)
Q Consensus        84 ~~~~~f~~~m~~~~~~~~~~~~----~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~  156 (259)
                      .++++|.......-....|.++    ...+  .....++||+|||||..+.++...-  -+.+++|+ ..|++.|.+  .
T Consensus        93 ~~Ae~Fd~~LVdkL~Y~vP~~l~emI~~~~--~g~F~~~lDLGCGTGL~G~~lR~~a--~~ltGvDiS~nMl~kA~eKg~  168 (287)
T COG4976          93 QYAERFDHILVDKLGYSVPELLAEMIGKAD--LGPFRRMLDLGCGTGLTGEALRDMA--DRLTGVDISENMLAKAHEKGL  168 (287)
T ss_pred             HHHHHHHHHHHHHhcCccHHHHHHHHHhcc--CCccceeeecccCcCcccHhHHHHH--hhccCCchhHHHHHHHHhccc
Confidence            3455666554433223333333    3333  3447899999999999999998874  35789999 788988876  2


Q ss_pred             CCCeEEEeC-CCCC--CCCCccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCC
Q 041250          157 LVNLKYVGG-DMFK--AISPAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENR  221 (259)
Q Consensus       157 ~~ri~~~~~-d~~~--~~~~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~  221 (259)
                      .+....-.. +|..  ....+|+|....||-+..+-  ..++.-+...|+|   ||.+.+.--..+++
T Consensus       169 YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~L--e~~~~~aa~~L~~---gGlfaFSvE~l~~~  231 (287)
T COG4976         169 YDTLYVAEAVLFLEDLTQERFDLIVAADVLPYLGAL--EGLFAGAAGLLAP---GGLFAFSVETLPDD  231 (287)
T ss_pred             hHHHHHHHHHHHhhhccCCcccchhhhhHHHhhcch--hhHHHHHHHhcCC---CceEEEEecccCCC
Confidence            333322222 2443  23369999999999998873  4799999999999   88775554444444

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=98.35  E-value=9.5e-07  Score=72.51  Aligned_cols=99  Identities=17%  Similarity=0.202  Sum_probs=76.4

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCC-------C--CCc
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKA-------I--SPA  174 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~-------~--~~~  174 (259)
                      ..++.+||+||+++|.-+..+++..| +.+++.+|. |+..+.|++      ..+||+++.+|..+.       .  ..|
T Consensus        43 ~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~f  122 (205)
T PF01596_consen   43 LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQF  122 (205)
T ss_dssp             HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSE
T ss_pred             hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCce
Confidence            45688999999999999999999887 589999999 888888876      458999999999761       1  259


Q ss_pred             cEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250          175 YAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKE  219 (259)
Q Consensus       175 D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~  219 (259)
                      |+|++-.     ...+-...+..+.+.|+|   || ++|+|.++-
T Consensus       123 D~VFiDa-----~K~~y~~y~~~~~~ll~~---gg-vii~DN~l~  158 (205)
T PF01596_consen  123 DFVFIDA-----DKRNYLEYFEKALPLLRP---GG-VIIADNVLW  158 (205)
T ss_dssp             EEEEEES-----TGGGHHHHHHHHHHHEEE---EE-EEEEETTTG
T ss_pred             eEEEEcc-----cccchhhHHHHHhhhccC---Ce-EEEEccccc
Confidence            9999875     334456788889999999   45 566665543

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.33  E-value=8.1e-06  Score=63.69  Aligned_cols=114  Identities=18%  Similarity=0.182  Sum_probs=94.1

Q ss_pred             hhhHHHHHhcccccCCCCeEEEecCCchHHHHHHHHH-CCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCC-C-----
Q 041250           99 LATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKA-FPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK-A-----  170 (259)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~-----  170 (259)
                      +.++.+....+  +....-|+++|.|+|.+..+++++ .+.-..+.++. ++......+..+.++++.||.+. .     
T Consensus        35 ~lA~~M~s~I~--pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e  112 (194)
T COG3963          35 ILARKMASVID--PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGE  112 (194)
T ss_pred             HHHHHHHhccC--cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhh
Confidence            44566666677  666778999999999999999886 35557888887 77777777777788899999987 2     


Q ss_pred             CC--CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250          171 IS--PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI  217 (259)
Q Consensus       171 ~~--~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~  217 (259)
                      .+  .+|.+++.--+-++|.....+||+.+...|++   ||.++-..+.
T Consensus       113 ~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~---gg~lvqftYg  158 (194)
T COG3963         113 HKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPA---GGPLVQFTYG  158 (194)
T ss_pred             cCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCC---CCeEEEEEec
Confidence            22  39999999988899999999999999999999   8988888775

>PLN02476 O-methyltransferase

Probab=98.32  E-value=6.6e-06  Score=70.42  Aligned_cols=99  Identities=11%  Similarity=0.069  Sum_probs=77.5

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCC---C------CCc
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKA---I------SPA  174 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~---~------~~~  174 (259)
                      ..+..+|||||+++|.-++.+++..| +.+++.+|. ++..+.|++      ..++|+++.||..+.   .      ..|
T Consensus       116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F  195 (278)
T PLN02476        116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY  195 (278)
T ss_pred             hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence            45688999999999999999999875 668999999 788888876      457999999998762   1      259


Q ss_pred             cEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250          175 YAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKE  219 (259)
Q Consensus       175 D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~  219 (259)
                      |++++-.     +..+-...+..+.+.|+|   ||.|++ |.++-
T Consensus       196 D~VFIDa-----~K~~Y~~y~e~~l~lL~~---GGvIV~-DNvL~  231 (278)
T PLN02476        196 DFAFVDA-----DKRMYQDYFELLLQLVRV---GGVIVM-DNVLW  231 (278)
T ss_pred             CEEEECC-----CHHHHHHHHHHHHHhcCC---CcEEEE-ecCcc
Confidence            9988863     344567889999999999   666544 54443

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=98.32  E-value=1.6e-06  Score=70.50  Aligned_cols=104  Identities=11%  Similarity=0.187  Sum_probs=71.9

Q ss_pred             HHhcccccCC--CCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCC--CCC--CccEE
Q 041250          105 IQKCKNVFEG--LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK--AIS--PAYAV  177 (259)
Q Consensus       105 ~~~~~~~~~~--~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~--~~~--~~D~~  177 (259)
                      ++.++  +++  +.-|||||||+|.-+..+...  +...+++|+ |.|++.|.+..-.-.++-+|+-+  |++  .||.+
T Consensus        41 LELLa--lp~~~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~  116 (270)
T KOG1541|consen   41 LELLA--LPGPKSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGV  116 (270)
T ss_pred             HHHhh--CCCCCCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceE
Confidence            44444  444  788999999999988887765  467999999 99999998511113577788887  433  38977


Q ss_pred             eehhhhc---------cCChHHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250          178 LLKWILL---------DWNDEECVKILKKCKEAITRDGKKRKVIIKD  215 (259)
Q Consensus       178 ~~~~vlh---------~~~d~~~~~il~~~~~~L~p~~~gg~lli~e  215 (259)
                      +....+.         +.|......++..++..|++   |++-++.-
T Consensus       117 ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~r---g~raV~Qf  160 (270)
T KOG1541|consen  117 ISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKR---GARAVLQF  160 (270)
T ss_pred             EEeeeeeeecccCccccChHHHHHHHhhhhhhhhcc---CceeEEEe
Confidence            7554432         11233345678889999998   78765543

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.32  E-value=4.2e-06  Score=71.91  Aligned_cols=103  Identities=18%  Similarity=0.283  Sum_probs=75.4

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCC-eEEEeec-hHHHhhccc---CCCCe--EEEeCCCCC---CCCCccEEeehhhh
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAFPKL-ECTCFDL-PHVVNGLES---DLVNL--KYVGGDMFK---AISPAYAVLLKWIL  183 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~---~~~ri--~~~~~d~~~---~~~~~D~~~~~~vl  183 (259)
                      .+.+|||+|+|.|..+.++...+|.+ +++++|. +.+++.++.   .....  .....++..   +.+..|+|+++|+|
T Consensus        33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~s~~L  112 (274)
T PF09243_consen   33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIASYVL  112 (274)
T ss_pred             CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEEehhh
Confidence            35799999999999999999988866 5899998 788877766   11111  111122221   33357999999999


Q ss_pred             ccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCC
Q 041250          184 LDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENR  221 (259)
Q Consensus       184 h~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~  221 (259)
                      -..+++....+++++.+.+.     +.|+|+|+--+..
T Consensus       113 ~EL~~~~r~~lv~~LW~~~~-----~~LVlVEpGt~~G  145 (274)
T PF09243_consen  113 NELPSAARAELVRSLWNKTA-----PVLVLVEPGTPAG  145 (274)
T ss_pred             hcCCchHHHHHHHHHHHhcc-----CcEEEEcCCChHH
Confidence            99998778888999988765     5899999754443

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=98.30  E-value=2.7e-06  Score=78.04  Aligned_cols=85  Identities=13%  Similarity=0.105  Sum_probs=62.0

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCC-----CC--CccEEe
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKA-----IS--PAYAVL  178 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~-----~~--~~D~~~  178 (259)
                      ..+..+|||+|||+|.++..+++..  .+++++|. +++++.|++     ..++++++.+|+.+.     ++  .||+++
T Consensus       295 ~~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi  372 (443)
T PRK13168        295 PQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVL  372 (443)
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEE
Confidence            4456799999999999999999885  58999999 889988876     346899999998752     22  489988


Q ss_pred             ehhhhccCChHHHHHHHHHHHHhccc
Q 041250          179 LKWILLDWNDEECVKILKKCKEAITR  204 (259)
Q Consensus       179 ~~~vlh~~~d~~~~~il~~~~~~L~p  204 (259)
                      +.---.     ....+++.+.+ ++|
T Consensus       373 ~dPPr~-----g~~~~~~~l~~-~~~  392 (443)
T PRK13168        373 LDPPRA-----GAAEVMQALAK-LGP  392 (443)
T ss_pred             ECcCCc-----ChHHHHHHHHh-cCC
Confidence            753221     12244555544 577

>PLN02823 spermine synthase

Probab=98.28  E-value=5.1e-06  Score=73.21  Aligned_cols=97  Identities=11%  Similarity=0.050  Sum_probs=73.2

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---------CCCCeEEEeCCCCC--C-CC-CccEEe
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---------DLVNLKYVGGDMFK--A-IS-PAYAVL  178 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~ri~~~~~d~~~--~-~~-~~D~~~  178 (259)
                      +++.+||-||||.|..+.++++..+..+++++|+ |.+++.+++         ..+|++++.+|.++  . .+ .||+|+
T Consensus       102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi  181 (336)
T PLN02823        102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII  181 (336)
T ss_pred             CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence            4567999999999999999998666678999999 899999987         24799999999987  2 22 599999


Q ss_pred             ehhhhccCC---hH--HHHHHHH-HHHHhcccCCCCcEEEE
Q 041250          179 LKWILLDWN---DE--ECVKILK-KCKEAITRDGKKRKVII  213 (259)
Q Consensus       179 ~~~vlh~~~---d~--~~~~il~-~~~~~L~p~~~gg~lli  213 (259)
                      +-- ...+.   ..  -...+++ .+++.|+|   ||.+++
T Consensus       182 ~D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p---~Gvlv~  218 (336)
T PLN02823        182 GDL-ADPVEGGPCYQLYTKSFYERIVKPKLNP---GGIFVT  218 (336)
T ss_pred             ecC-CCccccCcchhhccHHHHHHHHHHhcCC---CcEEEE
Confidence            762 11110   00  1235787 88999999   786554

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=98.25  E-value=7.6e-06  Score=68.94  Aligned_cols=121  Identities=16%  Similarity=0.214  Sum_probs=85.7

Q ss_pred             HHHHHHHhcchhh----hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHH-CCCCeEEEeec-hHHHhhccc------
Q 041250           88 FFNEAMASDARLA----TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKA-FPKLECTCFDL-PHVVNGLES------  155 (259)
Q Consensus        88 ~f~~~m~~~~~~~----~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~------  155 (259)
                      .|...|...++..    ...|+..++  +..+.+||+.|.|+|.++..|++. .|..++..+|. ++-.+.|++      
T Consensus        12 ~~~~~l~rrtQIiYpkD~~~I~~~l~--i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~g   89 (247)
T PF08704_consen   12 LWTLSLPRRTQIIYPKDISYILMRLD--IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHG   89 (247)
T ss_dssp             HHHHTS-SSS----HHHHHHHHHHTT----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTT
T ss_pred             HHHHhccCCcceeeCchHHHHHHHcC--CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcC
Confidence            3555555555532    345677777  888899999999999999999975 69999999998 788888776      


Q ss_pred             CCCCeEEEeCCCCC-CC-----CCccEEeehhhhccCChHHHHHHHHHHHHhc-ccCCCCcEEEEEeeeecC
Q 041250          156 DLVNLKYVGGDMFK-AI-----SPAYAVLLKWILLDWNDEECVKILKKCKEAI-TRDGKKRKVIIKDMIKEN  220 (259)
Q Consensus       156 ~~~ri~~~~~d~~~-~~-----~~~D~~~~~~vlh~~~d~~~~~il~~~~~~L-~p~~~gg~lli~e~~~~~  220 (259)
                      ..++|++..+|..+ .+     ..+|.+++     |+|+.  ...+..+.++| +|   ||+|.+.-+.++.
T Consensus        90 l~~~v~~~~~Dv~~~g~~~~~~~~~DavfL-----Dlp~P--w~~i~~~~~~L~~~---gG~i~~fsP~ieQ  151 (247)
T PF08704_consen   90 LDDNVTVHHRDVCEEGFDEELESDFDAVFL-----DLPDP--WEAIPHAKRALKKP---GGRICCFSPCIEQ  151 (247)
T ss_dssp             CCTTEEEEES-GGCG--STT-TTSEEEEEE-----ESSSG--GGGHHHHHHHE-EE---EEEEEEEESSHHH
T ss_pred             CCCCceeEecceecccccccccCcccEEEE-----eCCCH--HHHHHHHHHHHhcC---CceEEEECCCHHH
Confidence            56799999999975 23     24898776     46654  36789999999 88   8999888766554

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.23  E-value=9.1e-06  Score=67.65  Aligned_cols=96  Identities=16%  Similarity=0.185  Sum_probs=68.8

Q ss_pred             CeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CC-CCeEEEeCCCCC--C--CC--CccEEeehhhh
Q 041250          116 NSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DL-VNLKYVGGDMFK--A--IS--PAYAVLLKWIL  183 (259)
Q Consensus       116 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~-~ri~~~~~d~~~--~--~~--~~D~~~~~~vl  183 (259)
                      ..+||||||.|.+...+++++|+..++++++ ...+..+.+    .. .++.++++|..+  +  .+  ..|-|.+... 
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP-  128 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP-  128 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC-
Confidence            5899999999999999999999999999998 444433332    33 499999999877  2  22  3455544321 


Q ss_pred             ccCChH-------HHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250          184 LDWNDE-------ECVKILKKCKEAITRDGKKRKVIIKD  215 (259)
Q Consensus       184 h~~~d~-------~~~~il~~~~~~L~p~~~gg~lli~e  215 (259)
                      --|+..       -....|+.+++.|+|   ||.|.+..
T Consensus       129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~---gG~l~~aT  164 (227)
T COG0220         129 DPWPKKRHHKRRLTQPEFLKLYARKLKP---GGVLHFAT  164 (227)
T ss_pred             CCCCCccccccccCCHHHHHHHHHHccC---CCEEEEEe
Confidence            013311       124689999999999   99887765

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=98.23  E-value=8.7e-06  Score=67.12  Aligned_cols=101  Identities=14%  Similarity=0.166  Sum_probs=81.1

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeec-hHHHhhccc------CCCCeEEEe-CCCCC--C---CCCccEE
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES------DLVNLKYVG-GDMFK--A---ISPAYAV  177 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~-~d~~~--~---~~~~D~~  177 (259)
                      ..+.++||+||.+.|.-++.++...| +.+.|.+|+ |+..+.|++      ..++|+.+. +|..+  .   .+.||+|
T Consensus        57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli  136 (219)
T COG4122          57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV  136 (219)
T ss_pred             hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence            56789999999999999999999999 889999999 899999987      567799888 58776  2   2359999


Q ss_pred             eehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCC
Q 041250          178 LLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENR  221 (259)
Q Consensus       178 ~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~  221 (259)
                      ++-.     ...+-...|..+.+.|+|    |.++|+|.++...
T Consensus       137 FIDa-----dK~~yp~~le~~~~lLr~----GGliv~DNvl~~G  171 (219)
T COG4122         137 FIDA-----DKADYPEYLERALPLLRP----GGLIVADNVLFGG  171 (219)
T ss_pred             EEeC-----ChhhCHHHHHHHHHHhCC----CcEEEEeecccCC
Confidence            8864     333345789999999999    4566777766654

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.21  E-value=5.4e-06  Score=72.48  Aligned_cols=76  Identities=16%  Similarity=0.072  Sum_probs=59.5

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-------CCCCeEEEe----CCCCCCC--C--CccEE
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-------DLVNLKYVG----GDMFKAI--S--PAYAV  177 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~ri~~~~----~d~~~~~--~--~~D~~  177 (259)
                      ...++||||||+|.+...++.+.++.+++++|+ +.+++.|++       ..++|++..    .+++...  +  .||++
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli  193 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT  193 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence            457899999999999989998989999999999 888888886       246888864    2444421  2  59999


Q ss_pred             eehhhhccCChH
Q 041250          178 LLKWILLDWNDE  189 (259)
Q Consensus       178 ~~~~vlh~~~d~  189 (259)
                      +++--+|.-..+
T Consensus       194 vcNPPf~~s~~e  205 (321)
T PRK11727        194 LCNPPFHASAAE  205 (321)
T ss_pred             EeCCCCcCcchh
Confidence            999888865544

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.21  E-value=6e-06  Score=75.50  Aligned_cols=94  Identities=15%  Similarity=0.137  Sum_probs=64.7

Q ss_pred             CCeEEEecCCchHHHHHHHHHC----CCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-CCC-CccEEeehh
Q 041250          115 LNSLVDVGGGTGTAAKAIAKAF----PKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AIS-PAYAVLLKW  181 (259)
Q Consensus       115 ~~~vlDvGgG~G~~~~~l~~~~----p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~-~~D~~~~~~  181 (259)
                      ...|+|||||+|-++...+++.    ...++..++- |.++...++      -.++|+++.+|+.+ ..| ++|+++.-.
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSEl  266 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSEL  266 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE--
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEec
Confidence            5789999999999998776653    4568999997 544433321      46899999999999 666 699888766


Q ss_pred             hhccCChHHHHHHHHHHHHhcccCCCCcEE
Q 041250          182 ILLDWNDEECVKILKKCKEAITRDGKKRKV  211 (259)
Q Consensus       182 vlh~~~d~~~~~il~~~~~~L~p~~~gg~l  211 (259)
                      .=.....|-....|....+-|+|   +|.+
T Consensus       267 LGsfg~nEl~pE~Lda~~rfLkp---~Gi~  293 (448)
T PF05185_consen  267 LGSFGDNELSPECLDAADRFLKP---DGIM  293 (448)
T ss_dssp             -BTTBTTTSHHHHHHHGGGGEEE---EEEE
T ss_pred             cCCccccccCHHHHHHHHhhcCC---CCEE
Confidence            54434445566778888889999   6644

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.21  E-value=6.7e-06  Score=79.57  Aligned_cols=98  Identities=12%  Similarity=0.109  Sum_probs=72.8

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CC-CCeEEEeCCCCCC---CC-CccEEeehh
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DL-VNLKYVGGDMFKA---IS-PAYAVLLKW  181 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~-~ri~~~~~d~~~~---~~-~~D~~~~~~  181 (259)
                      +..+|||+|||+|.++..+++. ...+++.+|+ +.+++.+++      .. ++++++.+|.++.   .+ .||+|++.-
T Consensus       538 ~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP  616 (702)
T PRK11783        538 KGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP  616 (702)
T ss_pred             CCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence            3579999999999999999986 3347999999 888888887      22 5899999998872   23 599999853


Q ss_pred             hhc--------cCC-hHHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250          182 ILL--------DWN-DEECVKILKKCKEAITRDGKKRKVIIKD  215 (259)
Q Consensus       182 vlh--------~~~-d~~~~~il~~~~~~L~p~~~gg~lli~e  215 (259)
                      --.        .+. ...-..+++.+.+.|+|   ||.+++..
T Consensus       617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~---gG~l~~~~  656 (702)
T PRK11783        617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRP---GGTLYFSN  656 (702)
T ss_pred             CCCCCCCccchhhhHHHHHHHHHHHHHHHcCC---CCEEEEEe
Confidence            210        011 12235688889999999   88776653

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=98.19  E-value=7.8e-06  Score=70.46  Aligned_cols=94  Identities=11%  Similarity=0.099  Sum_probs=75.3

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhccc------CCCCeEEEeCCCCC-CCC-CccEEeehhhhccC
Q 041250          115 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES------DLVNLKYVGGDMFK-AIS-PAYAVLLKWILLDW  186 (259)
Q Consensus       115 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~d~~~-~~~-~~D~~~~~~vlh~~  186 (259)
                      .+.|||||||+|.++.-.+++. .-++..++-++|.+-|++      ..+||.+++|-..+ ++| ++|+++.-..-+.+
T Consensus       178 ~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG~mL  256 (517)
T KOG1500|consen  178 DKIVLDVGAGSGILSFFAAQAG-AKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMGYML  256 (517)
T ss_pred             CcEEEEecCCccHHHHHHHHhC-cceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccchhhh
Confidence            4679999999999998888774 337889998999888887      68999999999999 888 59998877655555


Q ss_pred             ChHHHHHHHHHHHHhcccCCCCcEEE
Q 041250          187 NDEECVKILKKCKEAITRDGKKRKVI  212 (259)
Q Consensus       187 ~d~~~~~il~~~~~~L~p~~~gg~ll  212 (259)
                      -+|...+-.-.+++-|+|   .|+.+
T Consensus       257 ~NERMLEsYl~Ark~l~P---~GkMf  279 (517)
T KOG1500|consen  257 VNERMLESYLHARKWLKP---NGKMF  279 (517)
T ss_pred             hhHHHHHHHHHHHhhcCC---CCccc
Confidence            556555555567789999   78764

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=98.19  E-value=1.1e-05  Score=72.88  Aligned_cols=100  Identities=10%  Similarity=-0.019  Sum_probs=72.0

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CC-CCeEEEeCCCCCC---C---C-CccEE
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DL-VNLKYVGGDMFKA---I---S-PAYAV  177 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~-~ri~~~~~d~~~~---~---~-~~D~~  177 (259)
                      .+..+|||+|||+|.+++..+.. +..+++.+|+ +.+++.+++      .. ++++++.+|.++.   .   . .||+|
T Consensus       219 ~~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlV  297 (396)
T PRK15128        219 VENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI  297 (396)
T ss_pred             cCCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEE
Confidence            34678999999999998876643 3458999999 888888876      22 4899999999872   1   2 59999


Q ss_pred             eehhhhccCChH-------HHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          178 LLKWILLDWNDE-------ECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       178 ~~~~vlh~~~d~-------~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      ++.--...-+..       .-..+++.+.+.|+|   ||.|+.+..
T Consensus       298 ilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~---gG~lv~~sc  340 (396)
T PRK15128        298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNP---GGILLTFSC  340 (396)
T ss_pred             EECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCC---CeEEEEEeC
Confidence            987432111111       123456677889999   898888765

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=98.17  E-value=1.1e-05  Score=69.28  Aligned_cols=99  Identities=14%  Similarity=0.206  Sum_probs=77.8

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---------CCCCeEEEeCCCCC---CCC-CccEEe
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---------DLVNLKYVGGDMFK---AIS-PAYAVL  178 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~ri~~~~~d~~~---~~~-~~D~~~  178 (259)
                      +++.+||=||||.|..+.++++-.+--+++.+|+ |.+++.+++         ..+|++.+.+|-.+   ..+ +||+|+
T Consensus        75 ~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi  154 (282)
T COG0421          75 PNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVII  154 (282)
T ss_pred             CCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEE
Confidence            4457999999999999999999988889999999 999999988         25899999999987   234 599998


Q ss_pred             ehhhhccCChH--HHHHHHHHHHHhcccCCCCcEEEEE
Q 041250          179 LKWILLDWNDE--ECVKILKKCKEAITRDGKKRKVIIK  214 (259)
Q Consensus       179 ~~~vlh~~~d~--~~~~il~~~~~~L~p~~~gg~lli~  214 (259)
                      +-..=..-+.+  -....++.++++|++   +|.++..
T Consensus       155 ~D~tdp~gp~~~Lft~eFy~~~~~~L~~---~Gi~v~q  189 (282)
T COG0421         155 VDSTDPVGPAEALFTEEFYEGCRRALKE---DGIFVAQ  189 (282)
T ss_pred             EcCCCCCCcccccCCHHHHHHHHHhcCC---CcEEEEe
Confidence            76432211100  024789999999999   7766555

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=98.17  E-value=4.7e-06  Score=70.45  Aligned_cols=100  Identities=18%  Similarity=0.246  Sum_probs=74.4

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---------CCCCeEEEeCCCCC---C-CC-CccEE
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---------DLVNLKYVGGDMFK---A-IS-PAYAV  177 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~ri~~~~~d~~~---~-~~-~~D~~  177 (259)
                      +++.+||=||+|.|..+.++++..+-.+++++|+ |.+++.+++         ..+|++++.+|...   . .. .||+|
T Consensus        75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI  154 (246)
T PF01564_consen   75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI  154 (246)
T ss_dssp             SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred             CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence            4688999999999999999987666678999999 899999887         25799999999876   2 23 59999


Q ss_pred             eehhhhccCChH--HHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250          178 LLKWILLDWNDE--ECVKILKKCKEAITRDGKKRKVIIKD  215 (259)
Q Consensus       178 ~~~~vlh~~~d~--~~~~il~~~~~~L~p~~~gg~lli~e  215 (259)
                      ++-..=-..+..  -....++.+++.|+|   +|.+++.-
T Consensus       155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~---~Gv~v~~~  191 (246)
T PF01564_consen  155 IVDLTDPDGPAPNLFTREFYQLCKRRLKP---DGVLVLQA  191 (246)
T ss_dssp             EEESSSTTSCGGGGSSHHHHHHHHHHEEE---EEEEEEEE
T ss_pred             EEeCCCCCCCcccccCHHHHHHHHhhcCC---CcEEEEEc
Confidence            874322111111  135789999999999   77766655

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.15  E-value=6.5e-06  Score=66.53  Aligned_cols=92  Identities=18%  Similarity=0.226  Sum_probs=70.8

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHH--CCCCeEEEeec-hHHHhhccc---------------CCCCeEEEeCCCCCC---
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKA--FPKLECTCFDL-PHVVNGLES---------------DLVNLKYVGGDMFKA---  170 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~---------------~~~ri~~~~~d~~~~---  170 (259)
                      +....+.||||+|+|.++..++..  -|....+++|. |++++.+++               ...++.++.||-..-   
T Consensus        80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e  159 (237)
T KOG1661|consen   80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE  159 (237)
T ss_pred             hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence            566789999999999999998864  24444589998 999988776               246888999999883   


Q ss_pred             CCCccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEE
Q 041250          171 ISPAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIK  214 (259)
Q Consensus       171 ~~~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~  214 (259)
                      ..+||.|....        .+.++.+++.+.|+|   ||+++|-
T Consensus       160 ~a~YDaIhvGA--------aa~~~pq~l~dqL~~---gGrllip  192 (237)
T KOG1661|consen  160 QAPYDAIHVGA--------AASELPQELLDQLKP---GGRLLIP  192 (237)
T ss_pred             cCCcceEEEcc--------CccccHHHHHHhhcc---CCeEEEe
Confidence            33699988772        234677788888999   8988774

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=98.12  E-value=9.3e-06  Score=70.56  Aligned_cols=95  Identities=14%  Similarity=0.102  Sum_probs=70.4

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhccc------CCCCeEEEeCCCCC-CCC--CccEEeehhhhc
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES------DLVNLKYVGGDMFK-AIS--PAYAVLLKWILL  184 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~d~~~-~~~--~~D~~~~~~vlh  184 (259)
                      +.++|||||||+|.++.--+++. ..++.++|-+++++.|.+      ..+.|+++.|...+ .+|  +.|+++.-|.=|
T Consensus        60 ~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy  138 (346)
T KOG1499|consen   60 KDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGY  138 (346)
T ss_pred             CCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhH
Confidence            36789999999999999999887 558999999888888876      56779999998887 555  699999888665


Q ss_pred             cCChHH-HHHHHHHHHHhcccCCCCcEEE
Q 041250          185 DWNDEE-CVKILKKCKEAITRDGKKRKVI  212 (259)
Q Consensus       185 ~~~d~~-~~~il~~~~~~L~p~~~gg~ll  212 (259)
                      ..--|. ...+|-.==+-|+|   ||.++
T Consensus       139 ~Ll~EsMldsVl~ARdkwL~~---~G~i~  164 (346)
T KOG1499|consen  139 FLLYESMLDSVLYARDKWLKE---GGLIY  164 (346)
T ss_pred             HHHHhhhhhhhhhhhhhccCC---CceEc
Confidence            543222 22233322246888   77554

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=98.12  E-value=1.7e-05  Score=69.63  Aligned_cols=67  Identities=18%  Similarity=0.147  Sum_probs=54.3

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-C--CC-CccEEeehhh
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-A--IS-PAYAVLLKWI  182 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~--~~-~~D~~~~~~v  182 (259)
                      ...+|||+|||+|.++..+++.  ..+++++|+ +.+++.|++     ..++++|+.+|+.+ .  .. .+|++++.--
T Consensus       173 ~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPP  249 (315)
T PRK03522        173 PPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPP  249 (315)
T ss_pred             CCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCC
Confidence            3579999999999999999985  468999999 888888876     33689999999976 2  22 4899887743

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=98.10  E-value=3.8e-05  Score=64.58  Aligned_cols=101  Identities=11%  Similarity=0.115  Sum_probs=71.1

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeC----CCCCCCC----CccEE
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGG----DMFKAIS----PAYAV  177 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~----d~~~~~~----~~D~~  177 (259)
                      .....++|+|||+|..+..++...|+.+++.+|. +.++..|.+      ..+|+..+..    |.+.+.+    ..|++
T Consensus       147 ~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dll  226 (328)
T KOG2904|consen  147 SKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLL  226 (328)
T ss_pred             cccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEE
Confidence            3455899999999999999999999999999999 666766655      6789988854    4444433    47877


Q ss_pred             eehh--hhccC----------------------ChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250          178 LLKW--ILLDW----------------------NDEECVKILKKCKEAITRDGKKRKVIIKDMI  217 (259)
Q Consensus       178 ~~~~--vlh~~----------------------~d~~~~~il~~~~~~L~p~~~gg~lli~e~~  217 (259)
                      +.+-  +.|+=                      ..+....++.-+.+.|+|   ||.+ ..|..
T Consensus       227 vsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~---gg~~-~le~~  286 (328)
T KOG2904|consen  227 VSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQP---GGFE-QLELV  286 (328)
T ss_pred             ecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhccc---CCeE-EEEec
Confidence            7662  33321                      012235667777889999   6654 44543

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.09  E-value=2.1e-05  Score=66.40  Aligned_cols=99  Identities=12%  Similarity=0.047  Sum_probs=76.9

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC--C-C-------CC
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK--A-I-------SP  173 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~--~-~-------~~  173 (259)
                      ..+..+||+||+++|.-+..+++.. |+.+++.+|. ++..+.|++      ..++|+++.||..+  + .       ..
T Consensus        77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~  156 (247)
T PLN02589         77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT  156 (247)
T ss_pred             HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence            4567899999999999999999986 5779999998 777787776      46899999999876  2 1       35


Q ss_pred             ccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250          174 AYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKE  219 (259)
Q Consensus       174 ~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~  219 (259)
                      ||++++-.-     .+.-...+..+.+.|+|   || ++|+|.++-
T Consensus       157 fD~iFiDad-----K~~Y~~y~~~~l~ll~~---GG-viv~DNvl~  193 (247)
T PLN02589        157 FDFIFVDAD-----KDNYINYHKRLIDLVKV---GG-VIGYDNTLW  193 (247)
T ss_pred             ccEEEecCC-----HHHhHHHHHHHHHhcCC---Ce-EEEEcCCCC
Confidence            999988742     33345778888899999   55 566665543

>PRK00536 speE spermidine synthase; Provisional

Probab=98.09  E-value=2.3e-05  Score=66.63  Aligned_cols=89  Identities=11%  Similarity=0.060  Sum_probs=69.1

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---------CCCCeEEEeCCCCCCC-CCccEEeeh
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---------DLVNLKYVGGDMFKAI-SPAYAVLLK  180 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~ri~~~~~d~~~~~-~~~D~~~~~  180 (259)
                      .+++++||=||||.|..++++++- |. +++.+|+ +.|++.+++         ..+|++++.. +.+.. ..||+|++-
T Consensus        70 h~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~~~~~fDVIIvD  146 (262)
T PRK00536         70 KKELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDLDIKKYDLIICL  146 (262)
T ss_pred             CCCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhccCCcCCEEEEc
Confidence            466899999999999999999986 54 9999999 889998887         4689998862 22222 369999976


Q ss_pred             hhhccCChHHHHHHHHHHHHhcccCCCCcEEEE
Q 041250          181 WILLDWNDEECVKILKKCKEAITRDGKKRKVII  213 (259)
Q Consensus       181 ~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli  213 (259)
                      ..    .+   ....+.++++|+|   ||.++.
T Consensus       147 s~----~~---~~fy~~~~~~L~~---~Gi~v~  169 (262)
T PRK00536        147 QE----PD---IHKIDGLKRMLKE---DGVFIS  169 (262)
T ss_pred             CC----CC---hHHHHHHHHhcCC---CcEEEE
Confidence            42    22   3578999999999   776554

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=98.08  E-value=4.5e-05  Score=63.66  Aligned_cols=120  Identities=16%  Similarity=0.205  Sum_probs=83.1

Q ss_pred             hhhcCchHHHHHHHHHHh----cchhhhHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhc
Q 041250           78 YAGDESKLNNFFNEAMAS----DARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGL  153 (259)
Q Consensus        78 ~l~~~~~~~~~f~~~m~~----~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a  153 (259)
                      .+..+|..-+.|++....    |...-...|++.+. ..++...|-|+|||-+.++.    .- .-++..+|+-.     
T Consensus       141 lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik-~r~~~~vIaD~GCGEakiA~----~~-~~kV~SfDL~a-----  209 (325)
T KOG3045|consen  141 LFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIK-RRPKNIVIADFGCGEAKIAS----SE-RHKVHSFDLVA-----  209 (325)
T ss_pred             HHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHH-hCcCceEEEecccchhhhhh----cc-ccceeeeeeec-----
Confidence            456677766666665543    22223455666666 23667889999999999887    11 23588888732     


Q ss_pred             ccCCCCeEEEeCCCCC-CCC--CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 041250          154 ESDLVNLKYVGGDMFK-AIS--PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIK  218 (259)
Q Consensus       154 ~~~~~ri~~~~~d~~~-~~~--~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~  218 (259)
                          .+-.++..|+.. |.+  ..|+++++-.|--- +  ....++++.|+|+|   ||.++|.|.-.
T Consensus       210 ----~~~~V~~cDm~~vPl~d~svDvaV~CLSLMgt-n--~~df~kEa~RiLk~---gG~l~IAEv~S  267 (325)
T KOG3045|consen  210 ----VNERVIACDMRNVPLEDESVDVAVFCLSLMGT-N--LADFIKEANRILKP---GGLLYIAEVKS  267 (325)
T ss_pred             ----CCCceeeccccCCcCccCcccEEEeeHhhhcc-c--HHHHHHHHHHHhcc---CceEEEEehhh
Confidence                244567788888 666  48998888766422 2  35689999999999   99999999743

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.07  E-value=1.1e-05  Score=69.67  Aligned_cols=78  Identities=17%  Similarity=0.203  Sum_probs=62.0

Q ss_pred             hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeec-hHHHhhccc-C--CCCeEEEeCCCCC--C-C-
Q 041250          101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES-D--LVNLKYVGGDMFK--A-I-  171 (259)
Q Consensus       101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-~--~~ri~~~~~d~~~--~-~-  171 (259)
                      ...+++.+.  ..+...+||++||.|..+..+++..| +.+++++|. |.+++.+++ .  .+|++++.+||.+  . . 
T Consensus         8 l~Evl~~L~--~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~   85 (296)
T PRK00050          8 LDEVVDALA--IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLA   85 (296)
T ss_pred             HHHHHHhhC--CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHH
Confidence            455666666  55567999999999999999999986 789999999 999998886 2  3689999999986  1 1 


Q ss_pred             ---CCccEEeeh
Q 041250          172 ---SPAYAVLLK  180 (259)
Q Consensus       172 ---~~~D~~~~~  180 (259)
                         +.+|.|++-
T Consensus        86 ~~~~~vDgIl~D   97 (296)
T PRK00050         86 EGLGKVDGILLD   97 (296)
T ss_pred             cCCCccCEEEEC
Confidence               147776654

>TIGR00095 RNA methyltransferase, RsmD family

Probab=98.07  E-value=1.4e-05  Score=64.85  Aligned_cols=97  Identities=13%  Similarity=0.119  Sum_probs=67.2

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC--C-C--C-C-ccEEeeh
Q 041250          115 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK--A-I--S-P-AYAVLLK  180 (259)
Q Consensus       115 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~--~-~--~-~-~D~~~~~  180 (259)
                      ..++||++||+|.++.+++.+... +++.+|. +.+++.+++      ..++++++.+|.++  . .  . . +|+|++-
T Consensus        50 g~~vLDLfaGsG~lglea~srga~-~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D  128 (189)
T TIGR00095        50 GAHLLDVFAGSGLLGEEALSRGAK-VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD  128 (189)
T ss_pred             CCEEEEecCCCcHHHHHHHhCCCC-EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence            578999999999999999998653 7999998 777776665      33589999999965  1 1  1 2 6777776


Q ss_pred             hhhccCChHHHHHHHHHHHH--hcccCCCCcEEEEEeeeec
Q 041250          181 WILLDWNDEECVKILKKCKE--AITRDGKKRKVIIKDMIKE  219 (259)
Q Consensus       181 ~vlh~~~d~~~~~il~~~~~--~L~p~~~gg~lli~e~~~~  219 (259)
                      --......   .+++..+..  .+++    +.++|+|....
T Consensus       129 PPy~~~~~---~~~l~~l~~~~~l~~----~~iiv~E~~~~  162 (189)
T TIGR00095       129 PPFFNGAL---QALLELCENNWILED----TVLIVVEEDRE  162 (189)
T ss_pred             cCCCCCcH---HHHHHHHHHCCCCCC----CeEEEEEecCC
Confidence            54433222   334444433  4665    55788886543

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.02  E-value=4e-05  Score=64.31  Aligned_cols=96  Identities=16%  Similarity=0.253  Sum_probs=68.7

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCCCCC-CccEEeehhhhccCChHHH
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKAIS-PAYAVLLKWILLDWNDEEC  191 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~~-~~D~~~~~~vlh~~~d~~~  191 (259)
                      +..++||||.|.|.....++..+.+  +.+-+. +.|....++  ..++.+..|-...-+ +||+|.+-++|-.-.+.  
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f~~--v~aTE~S~~Mr~rL~~--kg~~vl~~~~w~~~~~~fDvIscLNvLDRc~~P--  167 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLFKE--VYATEASPPMRWRLSK--KGFTVLDIDDWQQTDFKFDVISCLNVLDRCDRP--  167 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhcce--EEeecCCHHHHHHHHh--CCCeEEehhhhhccCCceEEEeehhhhhccCCH--
Confidence            4578999999999999999998876  566676 666655553  233444333233222 59999999999766554  


Q ss_pred             HHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250          192 VKILKKCKEAITRDGKKRKVIIKDMIKE  219 (259)
Q Consensus       192 ~~il~~~~~~L~p~~~gg~lli~e~~~~  219 (259)
                      ..+|+.++++|+|   +|++++. .++|
T Consensus       168 ~~LL~~i~~~l~p---~G~lilA-vVlP  191 (265)
T PF05219_consen  168 LTLLRDIRRALKP---NGRLILA-VVLP  191 (265)
T ss_pred             HHHHHHHHHHhCC---CCEEEEE-EEec
Confidence            5899999999999   7876654 3444

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=98.00  E-value=2.7e-05  Score=65.42  Aligned_cols=75  Identities=20%  Similarity=0.377  Sum_probs=62.5

Q ss_pred             hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-CCC
Q 041250          101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AIS  172 (259)
Q Consensus       101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~  172 (259)
                      ...+++.-+  +.....||+||.|+|.+...++++  +.+++.+++ |.++...++      ...+.+++.+|+++ ++|
T Consensus        47 ~~~I~~ka~--~k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P  122 (315)
T KOG0820|consen   47 IDQIVEKAD--LKPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP  122 (315)
T ss_pred             HHHHHhccC--CCCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc
Confidence            455666666  788899999999999999999999  567899988 888876655      45799999999999 889


Q ss_pred             CccEEee
Q 041250          173 PAYAVLL  179 (259)
Q Consensus       173 ~~D~~~~  179 (259)
                      .+|.++.
T Consensus       123 ~fd~cVs  129 (315)
T KOG0820|consen  123 RFDGCVS  129 (315)
T ss_pred             ccceeec
Confidence            8887665

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=97.96  E-value=5.5e-05  Score=66.16  Aligned_cols=98  Identities=12%  Similarity=0.192  Sum_probs=72.7

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHC----CCCeEEEeec-hHHHhhccc-----CCCCeEE--EeCCCCCC---CC-----
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAF----PKLECTCFDL-PHVVNGLES-----DLVNLKY--VGGDMFKA---IS-----  172 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~----p~~~~~~~D~-~~~~~~a~~-----~~~ri~~--~~~d~~~~---~~-----  172 (259)
                      .....|||+|||+|.=...|++..    ...+++.+|+ .+.++.+.+     ..+.+++  +.+||.++   .+     
T Consensus        75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~  154 (319)
T TIGR03439        75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENR  154 (319)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhccccccc
Confidence            345689999999999877776654    3467999999 456665544     2355666  78899762   21     


Q ss_pred             -Ccc-EEeehhhhccCChHHHHHHHHHHHH-hcccCCCCcEEEE
Q 041250          173 -PAY-AVLLKWILLDWNDEECVKILKKCKE-AITRDGKKRKVII  213 (259)
Q Consensus       173 -~~D-~~~~~~vlh~~~d~~~~~il~~~~~-~L~p~~~gg~lli  213 (259)
                       ... ++++...+.+++++++..+|+++++ .|+|   |+.++|
T Consensus       155 ~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~---~d~lLi  195 (319)
T TIGR03439       155 SRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSP---SDSFLI  195 (319)
T ss_pred             CCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCC---CCEEEE
Confidence             134 4556689999999999999999999 9999   677665

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=97.96  E-value=1.7e-05  Score=67.10  Aligned_cols=98  Identities=16%  Similarity=0.106  Sum_probs=75.9

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCC-CCC--CccEEeehhhhccCCh-
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK-AIS--PAYAVLLKWILLDWND-  188 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~~--~~D~~~~~~vlh~~~d-  188 (259)
                      ....++|+|||.|-+..-    +|.+..++.|+ ...+..+++ .+-......|+.+ |.+  .+|..+...++|+|.- 
T Consensus        45 ~gsv~~d~gCGngky~~~----~p~~~~ig~D~c~~l~~~ak~-~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~  119 (293)
T KOG1331|consen   45 TGSVGLDVGCGNGKYLGV----NPLCLIIGCDLCTGLLGGAKR-SGGDNVCRADALKLPFREESFDAALSIAVIHHLSTR  119 (293)
T ss_pred             CcceeeecccCCcccCcC----CCcceeeecchhhhhcccccc-CCCceeehhhhhcCCCCCCccccchhhhhhhhhhhH
Confidence            367899999999988754    68889999999 566666664 2222566678887 554  5999999999999975 


Q ss_pred             HHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250          189 EECVKILKKCKEAITRDGKKRKVIIKDMIKE  219 (259)
Q Consensus       189 ~~~~~il~~~~~~L~p~~~gg~lli~e~~~~  219 (259)
                      +...++++++.+.++|   ||..+|.-.-..
T Consensus       120 ~RR~~~l~e~~r~lrp---gg~~lvyvwa~~  147 (293)
T KOG1331|consen  120 ERRERALEELLRVLRP---GGNALVYVWALE  147 (293)
T ss_pred             HHHHHHHHHHHHHhcC---CCceEEEEehhh
Confidence            4456899999999999   898777655443

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=97.94  E-value=3.1e-05  Score=69.53  Aligned_cols=92  Identities=14%  Similarity=0.110  Sum_probs=64.0

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCC---C-CCccEEeehhhh
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKA---I-SPAYAVLLKWIL  183 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~---~-~~~D~~~~~~vl  183 (259)
                      ...+|||+|||+|.++..++..  ..+++++|. +.+++.|++     ..++++|+.+|+.+.   . .++|+|++.---
T Consensus       233 ~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr  310 (374)
T TIGR02085       233 PVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPR  310 (374)
T ss_pred             CCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCC
Confidence            3468999999999999999865  468999999 888888776     335899999998762   2 248998887432


Q ss_pred             ccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          184 LDWNDEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       184 h~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      -.. ++   ++++.+. .++|    ++++.++.
T Consensus       311 ~G~-~~---~~l~~l~-~~~p----~~ivyvsc  334 (374)
T TIGR02085       311 RGI-GK---ELCDYLS-QMAP----KFILYSSC  334 (374)
T ss_pred             CCC-cH---HHHHHHH-hcCC----CeEEEEEe
Confidence            111 22   3444443 3677    44555553

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=97.90  E-value=5.1e-05  Score=70.72  Aligned_cols=99  Identities=13%  Similarity=0.168  Sum_probs=70.5

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hH-HHhhccc----CCCCeEEEeCCCCC---CCC--CccEEeehhh
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PH-VVNGLES----DLVNLKYVGGDMFK---AIS--PAYAVLLKWI  182 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~-~~~~a~~----~~~ri~~~~~d~~~---~~~--~~D~~~~~~v  182 (259)
                      +...+||||||.|.++..+++++|+..++++|+ .. +....++    ...++.++.+|+..   .+|  ..|.+++.+.
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP  426 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP  426 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence            457899999999999999999999999999998 33 3332222    45788888887642   244  3666665532


Q ss_pred             hccCChH-------HHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          183 LLDWNDE-------ECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       183 lh~~~d~-------~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      = -|+..       -....|+.+++.|+|   ||.|.+..-
T Consensus       427 D-PWpKkrh~krRl~~~~fl~~~~~~Lk~---gG~i~~~TD  463 (506)
T PRK01544        427 D-PWIKNKQKKKRIFNKERLKILQDKLKD---NGNLVFASD  463 (506)
T ss_pred             C-CCCCCCCccccccCHHHHHHHHHhcCC---CCEEEEEcC
Confidence            1 13321       124689999999999   998877653

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=97.90  E-value=3.8e-05  Score=61.95  Aligned_cols=90  Identities=17%  Similarity=0.248  Sum_probs=68.5

Q ss_pred             eEEEecCCchHHHHHHHHHCCCCeEEEeec-h---HHHhhccc--CCCCeEEEeCCCCC-CCC-CccEEeehhhhccCCh
Q 041250          117 SLVDVGGGTGTAAKAIAKAFPKLECTCFDL-P---HVVNGLES--DLVNLKYVGGDMFK-AIS-PAYAVLLKWILLDWND  188 (259)
Q Consensus       117 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~---~~~~~a~~--~~~ri~~~~~d~~~-~~~-~~D~~~~~~vlh~~~d  188 (259)
                      +++|||+|.|.-++-++-.+|+.+++.+|- .   ..+..+..  ..++++++.+...+ ..+ .||+++.+.+-.    
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv~~----  126 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAVAP----  126 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESSSS----
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehhcC----
Confidence            899999999999999999999999999996 3   33333333  56789999998887 333 699999887542    


Q ss_pred             HHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250          189 EECVKILKKCKEAITRDGKKRKVIIKD  215 (259)
Q Consensus       189 ~~~~~il~~~~~~L~p~~~gg~lli~e  215 (259)
                        ...++.-+...+++   ||+++..-
T Consensus       127 --l~~l~~~~~~~l~~---~G~~l~~K  148 (184)
T PF02527_consen  127 --LDKLLELARPLLKP---GGRLLAYK  148 (184)
T ss_dssp             --HHHHHHHHGGGEEE---EEEEEEEE
T ss_pred             --HHHHHHHHHHhcCC---CCEEEEEc
Confidence              34678888888999   89888774

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=97.89  E-value=2.6e-05  Score=71.38  Aligned_cols=92  Identities=20%  Similarity=0.283  Sum_probs=64.7

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCC-----C-C-CccEEe
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKA-----I-S-PAYAVL  178 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~-----~-~-~~D~~~  178 (259)
                      ..+..+|||+|||+|.++..+++..  .+++++|. +.+++.|++     ...+++|+.+|+.+.     . . .+|+++
T Consensus       290 ~~~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi  367 (431)
T TIGR00479       290 LQGEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLL  367 (431)
T ss_pred             cCCCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEE
Confidence            4556799999999999999999874  47999999 889988876     346899999998651     1 1 389888


Q ss_pred             ehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEE
Q 041250          179 LKWILLDWNDEECVKILKKCKEAITRDGKKRKVII  213 (259)
Q Consensus       179 ~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli  213 (259)
                      +.-.=-.. +   ..+++.+.+ ++|   ++.+++
T Consensus       368 ~dPPr~G~-~---~~~l~~l~~-l~~---~~ivyv  394 (431)
T TIGR00479       368 LDPPRKGC-A---AEVLRTIIE-LKP---ERIVYV  394 (431)
T ss_pred             ECcCCCCC-C---HHHHHHHHh-cCC---CEEEEE
Confidence            64321111 1   245555443 777   554444

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.88  E-value=8.7e-06  Score=70.55  Aligned_cols=102  Identities=16%  Similarity=0.256  Sum_probs=72.3

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCe-EEEeechHHHhhc----cc--CCCCeEEEeCCCCC---CCCCccEEeehhhhc
Q 041250          115 LNSLVDVGGGTGTAAKAIAKAFPKLE-CTCFDLPHVVNGL----ES--DLVNLKYVGGDMFK---AISPAYAVLLKWILL  184 (259)
Q Consensus       115 ~~~vlDvGgG~G~~~~~l~~~~p~~~-~~~~D~~~~~~~a----~~--~~~ri~~~~~d~~~---~~~~~D~~~~~~vlh  184 (259)
                      +.+|||||-|.|.-+.++-.-+|+++ +++++....+...    .+  ...+..+-..|+..   ++|..|.|.+..++|
T Consensus       114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~~  193 (484)
T COG5459         114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVLD  193 (484)
T ss_pred             cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhhh
Confidence            56799999999999999999999996 7777764333322    21  33445555666655   566667766666555


Q ss_pred             cC----ChHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250          185 DW----NDEECVKILKKCKEAITRDGKKRKVIIKDMIKE  219 (259)
Q Consensus       185 ~~----~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~  219 (259)
                      .+    ........+..+...+.|   ||.|+|+|..-|
T Consensus       194 eLl~d~~ek~i~~~ie~lw~l~~~---gg~lVivErGtp  229 (484)
T COG5459         194 ELLPDGNEKPIQVNIERLWNLLAP---GGHLVIVERGTP  229 (484)
T ss_pred             hhccccCcchHHHHHHHHHHhccC---CCeEEEEeCCCc
Confidence            43    444444588999999999   999999997443

>TIGR00478 tly hemolysin TlyA family protein

Probab=97.81  E-value=0.00026  Score=59.09  Aligned_cols=99  Identities=12%  Similarity=0.096  Sum_probs=63.3

Q ss_pred             hHHHHHhccccc-CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhh-cccCCCCeE-EEeCCCCC-------
Q 041250          101 TSVMIQKCKNVF-EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNG-LESDLVNLK-YVGGDMFK-------  169 (259)
Q Consensus       101 ~~~~~~~~~~~~-~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~-a~~~~~ri~-~~~~d~~~-------  169 (259)
                      ...+++.++  . ....++||+|||+|.++..+++. +..+++++|. +.++.. .+ ..+|+. +...|+..       
T Consensus        63 L~~~l~~~~--~~~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~-~~~~v~~~~~~ni~~~~~~~~~  138 (228)
T TIGR00478        63 LKEALEEFN--IDVKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLR-QDERVKVLERTNIRYVTPADIF  138 (228)
T ss_pred             HHHHHHhcC--CCCCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHh-cCCCeeEeecCCcccCCHhHcC
Confidence            344555555  3 34578999999999999999987 3457999999 545543 33 344543 33334442       


Q ss_pred             -CCCCccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          170 -AISPAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       170 -~~~~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                       +++.+|+.+++..+          +|..+.+.|+|   +-.++++-+
T Consensus       139 ~d~~~~DvsfiS~~~----------~l~~i~~~l~~---~~~~~L~KP  173 (228)
T TIGR00478       139 PDFATFDVSFISLIS----------ILPELDLLLNP---NDLTLLFKP  173 (228)
T ss_pred             CCceeeeEEEeehHh----------HHHHHHHHhCc---CeEEEEcCh
Confidence             11247877776543          47788888887   445555543

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=97.74  E-value=2.5e-05  Score=70.97  Aligned_cols=98  Identities=12%  Similarity=0.129  Sum_probs=68.2

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEee---c-hHHHhhcccCCCCeEEEeCCC---CCCCC--CccEEeehhhhc
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFD---L-PHVVNGLESDLVNLKYVGGDM---FKAIS--PAYAVLLKWILL  184 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D---~-~~~~~~a~~~~~ri~~~~~d~---~~~~~--~~D~~~~~~vlh  184 (259)
                      +..++||||||.|.++..+..+  ++..+.+-   - +..++.|-+.  .|--+.+-+   .=|+|  .||++.+++++.
T Consensus       117 ~iR~~LDvGcG~aSF~a~l~~r--~V~t~s~a~~d~~~~qvqfaleR--Gvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i  192 (506)
T PF03141_consen  117 GIRTALDVGCGVASFGAYLLER--NVTTMSFAPNDEHEAQVQFALER--GVPAMIGVLGSQRLPFPSNAFDMVHCSRCLI  192 (506)
T ss_pred             ceEEEEeccceeehhHHHHhhC--CceEEEcccccCCchhhhhhhhc--CcchhhhhhccccccCCccchhhhhcccccc
Confidence            4568999999999999999998  45433332   2 2334444321  122222222   22677  499999999999


Q ss_pred             cCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250          185 DWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKE  219 (259)
Q Consensus       185 ~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~  219 (259)
                      .|...+ -.+|-++-|+|+|   ||.+++.-+-..
T Consensus       193 ~W~~~~-g~~l~evdRvLRp---GGyfv~S~ppv~  223 (506)
T PF03141_consen  193 PWHPND-GFLLFEVDRVLRP---GGYFVLSGPPVY  223 (506)
T ss_pred             cchhcc-cceeehhhhhhcc---CceEEecCCccc
Confidence            998765 3589999999999   999888776555

; GO: 0008168 methyltransferase activity

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=97.72  E-value=0.00023  Score=60.20  Aligned_cols=84  Identities=13%  Similarity=0.315  Sum_probs=61.2

Q ss_pred             hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEeCCCCC-CCCC--
Q 041250          101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFK-AISP--  173 (259)
Q Consensus       101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~-~~~~--  173 (259)
                      ...+++..+  .....+|++||+|.|.++..++++..  +++++++ +..++..++   ..++++++.+|+.+ ++++  
T Consensus        19 ~~kIv~~a~--~~~~d~VlEIGpG~GaLT~~Ll~~~~--~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~   94 (259)
T COG0030          19 IDKIVEAAN--ISPGDNVLEIGPGLGALTEPLLERAA--RVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLA   94 (259)
T ss_pred             HHHHHHhcC--CCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhc
Confidence            456666666  66678999999999999999999965  4777777 666666555   46899999999999 6763  


Q ss_pred             -ccEEeehhhhccCChH
Q 041250          174 -AYAVLLKWILLDWNDE  189 (259)
Q Consensus       174 -~D~~~~~~vlh~~~d~  189 (259)
                       ++ .+.++.-++.+-.
T Consensus        95 ~~~-~vVaNlPY~Issp  110 (259)
T COG0030          95 QPY-KVVANLPYNISSP  110 (259)
T ss_pred             CCC-EEEEcCCCcccHH
Confidence             33 3344444444443

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=97.71  E-value=0.00015  Score=59.27  Aligned_cols=87  Identities=14%  Similarity=0.118  Sum_probs=67.1

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhcccCCCCeEEEeCCCCC-CCC-----CccEEeehhhhccCCh
Q 041250          115 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFK-AIS-----PAYAVLLKWILLDWND  188 (259)
Q Consensus       115 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~-~~~-----~~D~~~~~~vlh~~~d  188 (259)
                      .-++|||||-+......   .++-+.++-+|+.+.         .=.+...||++ |.|     .||+|.++-||.+.|+
T Consensus        52 ~lrlLEVGals~~N~~s---~~~~fdvt~IDLns~---------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~  119 (219)
T PF11968_consen   52 KLRLLEVGALSTDNACS---TSGWFDVTRIDLNSQ---------HPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPD  119 (219)
T ss_pred             cceEEeecccCCCCccc---ccCceeeEEeecCCC---------CCCceeeccccCCCCCCcccceeEEEEEEEEeeCCC
Confidence            46999999986665544   355667999998331         22456789999 776     3999999999999986


Q ss_pred             -HHHHHHHHHHHHhcccCCCCcE-----EEEEee
Q 041250          189 -EECVKILKKCKEAITRDGKKRK-----VIIKDM  216 (259)
Q Consensus       189 -~~~~~il~~~~~~L~p~~~gg~-----lli~e~  216 (259)
                       .+.-++++++.+.|+|   +|.     |+|+-+
T Consensus       120 p~~RG~Ml~r~~~fL~~---~g~~~~~~LFlVlP  150 (219)
T PF11968_consen  120 PKQRGEMLRRAHKFLKP---PGLSLFPSLFLVLP  150 (219)
T ss_pred             HHHHHHHHHHHHHHhCC---CCccCcceEEEEeC
Confidence             4556899999999999   788     777654

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=97.69  E-value=0.00017  Score=55.70  Aligned_cols=85  Identities=22%  Similarity=0.294  Sum_probs=61.1

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHH----CCCCeEEEeec-hHHHhhccc--------CCCCeEEEeCCCCCC-CC-CccE
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKA----FPKLECTCFDL-PHVVNGLES--------DLVNLKYVGGDMFKA-IS-PAYA  176 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~--------~~~ri~~~~~d~~~~-~~-~~D~  176 (259)
                      ..+..+|+|+|||.|.++..++..    .|+++++++|. +..++.+.+        ...++++..++.... .. ..++
T Consensus        23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (141)
T PF13679_consen   23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDI  102 (141)
T ss_pred             cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeE
Confidence            356789999999999999999982    37899999998 666666554        236777777776652 23 4677


Q ss_pred             EeehhhhccCChHHHHHHHHHHHH
Q 041250          177 VLLKWILLDWNDEECVKILKKCKE  200 (259)
Q Consensus       177 ~~~~~vlh~~~d~~~~~il~~~~~  200 (259)
                      ++--|..-+.++    .+|+...+
T Consensus       103 ~vgLHaCG~Ls~----~~l~~~~~  122 (141)
T PF13679_consen  103 LVGLHACGDLSD----RALRLFIR  122 (141)
T ss_pred             EEEeecccchHH----HHHHHHHH
Confidence            777777777766    35555544

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=97.67  E-value=0.00016  Score=64.95  Aligned_cols=91  Identities=16%  Similarity=0.096  Sum_probs=70.8

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC--C-CCCccEEeehhhhcc
Q 041250          115 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK--A-ISPAYAVLLKWILLD  185 (259)
Q Consensus       115 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~--~-~~~~D~~~~~~vlh~  185 (259)
                      ..+|+|++||+|.+++.++.+.+..++++.|+ |.+++.+++     ..+++++..+|...  . ...||+|++.-.   
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP~---  134 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDPF---  134 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECCC---
Confidence            46899999999999999999887668999999 888888776     34567788899865  2 235999988642   


Q ss_pred             CChHHHHHHHHHHHHhcccCCCCcEEEEE
Q 041250          186 WNDEECVKILKKCKEAITRDGKKRKVIIK  214 (259)
Q Consensus       186 ~~d~~~~~il~~~~~~L~p~~~gg~lli~  214 (259)
                       ..  ...++..+.+.+++   ||.|+|.
T Consensus       135 -Gs--~~~~l~~al~~~~~---~gilyvS  157 (382)
T PRK04338        135 -GS--PAPFLDSAIRSVKR---GGLLCVT  157 (382)
T ss_pred             -CC--cHHHHHHHHHHhcC---CCEEEEE
Confidence             11  23577887777888   8888887

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.65  E-value=0.00032  Score=55.65  Aligned_cols=102  Identities=13%  Similarity=0.301  Sum_probs=73.5

Q ss_pred             CCeEEEecCCchHHHHHHHHHC-CCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCCCC--CCccEEeehhhhc--
Q 041250          115 LNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFKAI--SPAYAVLLKWILL--  184 (259)
Q Consensus       115 ~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~~~--~~~D~~~~~~vlh--  184 (259)
                      ..-+++||||+|..+..+++.. |+......|+ |.+++...+    ...++..+..|+.+.+  .+.|+.+++.-.-  
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfNPPYVpt  123 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFNPPYVPT  123 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEECCCcCcC
Confidence            6789999999999999998864 8888999999 888776544    5667788889998832  3588877764221  


Q ss_pred             ------------cCC-----hHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250          185 ------------DWN-----DEECVKILKKCKEAITRDGKKRKVIIKDMIKE  219 (259)
Q Consensus       185 ------------~~~-----d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~  219 (259)
                                  -|.     .+-..++|..+-+.|.|   .|.++++-.-.+
T Consensus       124 ~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp---~Gv~Ylv~~~~N  172 (209)
T KOG3191|consen  124 SDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSP---RGVFYLVALRAN  172 (209)
T ss_pred             CcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCc---CceEEeeehhhc
Confidence                        121     12234677777788888   788887765443

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=97.62  E-value=0.0002  Score=58.98  Aligned_cols=89  Identities=19%  Similarity=0.269  Sum_probs=66.3

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEeec----hHHHhhccc--CCCCeEEEeCCCCC--CCCC-ccEEeehhhhcc
Q 041250          115 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL----PHVVNGLES--DLVNLKYVGGDMFK--AISP-AYAVLLKWILLD  185 (259)
Q Consensus       115 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~----~~~~~~a~~--~~~ri~~~~~d~~~--~~~~-~D~~~~~~vlh~  185 (259)
                      ..+++|||.|.|.-++-++-.+|+++++.+|-    -..++.+.+  ..++++++.+...+  +.+. ||+++++.+-- 
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva~-  146 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVAS-  146 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehccc-
Confidence            58999999999999999999999999999996    244454444  66889999998877  2345 99998886442 


Q ss_pred             CChHHHHHHHHHHHHhcccCCCCcEEE
Q 041250          186 WNDEECVKILKKCKEAITRDGKKRKVI  212 (259)
Q Consensus       186 ~~d~~~~~il~~~~~~L~p~~~gg~ll  212 (259)
                           ...++.-+...+++   ||+++
T Consensus       147 -----L~~l~e~~~pllk~---~g~~~  165 (215)
T COG0357         147 -----LNVLLELCLPLLKV---GGGFL  165 (215)
T ss_pred             -----hHHHHHHHHHhccc---CCcch
Confidence                 22345555556676   66654

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=97.61  E-value=0.00012  Score=59.06  Aligned_cols=101  Identities=12%  Similarity=0.086  Sum_probs=66.3

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------------CCCCeEEEeCCCCCCCCC-ccE---
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------------DLVNLKYVGGDMFKAISP-AYA---  176 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------~~~ri~~~~~d~~~~~~~-~D~---  176 (259)
                      ....++|||||.|.+++.++-.+|+--++++++ -.|.+-.++            ...++.+...+.+.-.|. |--   
T Consensus        60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL  139 (249)
T KOG3115|consen   60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL  139 (249)
T ss_pred             ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccc
Confidence            346799999999999999999999999999998 333332222            346677777766664442 211   


Q ss_pred             ---EeehhhhccCChHH-----HHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250          177 ---VLLKWILLDWNDEE-----CVKILKKCKEAITRDGKKRKVIIKDMI  217 (259)
Q Consensus       177 ---~~~~~vlh~~~d~~-----~~~il~~~~~~L~p~~~gg~lli~e~~  217 (259)
                         .++..--|.|....     ..+++.+..-.|++   ||.++.+.-+
T Consensus       140 skmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~---gg~~ytitDv  185 (249)
T KOG3115|consen  140 SKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLRE---GGILYTITDV  185 (249)
T ss_pred             ccceeecCChhHhhhhccceeechhHHHHHHhhhhc---CceEEEEeeH
Confidence               22222233332211     24577788889999   8988877654

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=97.61  E-value=5.2e-05  Score=59.75  Aligned_cols=64  Identities=20%  Similarity=0.364  Sum_probs=48.1

Q ss_pred             CeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCC---CC--C-ccEEeehh
Q 041250          116 NSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKA---IS--P-AYAVLLKW  181 (259)
Q Consensus       116 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~---~~--~-~D~~~~~~  181 (259)
                      .+|+|+.||.|..++++++.++  +++.+|+ |..++.++.      ..+||.|+.+|+++.   +.  . +|+|+++-
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~~~--~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP   77 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFARTFD--RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP   77 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred             CEEEEeccCcCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence            3699999999999999999965  5899998 888888876      478999999999982   22  2 79999874

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=97.60  E-value=0.0003  Score=56.59  Aligned_cols=102  Identities=13%  Similarity=0.141  Sum_probs=67.8

Q ss_pred             hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCe---------EEEeec-hHHHhhccc------CCCCeEEEe
Q 041250          101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLE---------CTCFDL-PHVVNGLES------DLVNLKYVG  164 (259)
Q Consensus       101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~---------~~~~D~-~~~~~~a~~------~~~ri~~~~  164 (259)
                      +..++....  +.+...|+|-=||+|.++++.+...++..         +++.|+ +.++..+++      ....|.+..
T Consensus        17 A~~ll~la~--~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~   94 (179)
T PF01170_consen   17 AAALLNLAG--WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQ   94 (179)
T ss_dssp             HHHHHHHTT----TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE
T ss_pred             HHHHHHHhC--CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEe
Confidence            334444445  56678999999999999999988777776         999999 888888776      456799999


Q ss_pred             CCCCC-CCC--CccEEeehhhhcc-CCh-HHH----HHHHHHHHHhccc
Q 041250          165 GDMFK-AIS--PAYAVLLKWILLD-WND-EEC----VKILKKCKEAITR  204 (259)
Q Consensus       165 ~d~~~-~~~--~~D~~~~~~vlh~-~~d-~~~----~~il~~~~~~L~p  204 (259)
                      .|+.+ +.+  .+|+|+..--.-. ... .+.    .++++.+.+++++
T Consensus        95 ~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~  143 (179)
T PF01170_consen   95 WDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP  143 (179)
T ss_dssp             --GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred             cchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence            99998 633  4898888754432 122 222    3456777777876

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=97.57  E-value=0.00057  Score=54.88  Aligned_cols=111  Identities=15%  Similarity=0.221  Sum_probs=76.1

Q ss_pred             HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCCCCCCccE
Q 041250          102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFKAISPAYA  176 (259)
Q Consensus       102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~~~~~~D~  176 (259)
                      ..+.++=+  .-..++|||+|.|+|..+++.++.. ...++..|+ |..+...+-    ..-.|.+...|..-+.+.+|+
T Consensus        69 R~i~~~Pe--tVrgkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl  145 (218)
T COG3897          69 RYIDDHPE--TVRGKRVLDLGAGSGLVAIAAARAG-AAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDL  145 (218)
T ss_pred             HHHhcCcc--ccccceeeecccccChHHHHHHHhh-hHHHHhcCCChHHHHHhhcchhhccceeEEeeccccCCCcceeE
Confidence            44444433  4456899999999999999988874 234666777 443333322    567888888888775557999


Q ss_pred             EeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecC
Q 041250          177 VLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKEN  220 (259)
Q Consensus       177 ~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~  220 (259)
                      ++.+.++++-+.  +.++++ ..+.+...  |..++|.++..+.
T Consensus       146 ~LagDlfy~~~~--a~~l~~-~~~~l~~~--g~~vlvgdp~R~~  184 (218)
T COG3897         146 LLAGDLFYNHTE--ADRLIP-WKDRLAEA--GAAVLVGDPGRAY  184 (218)
T ss_pred             EEeeceecCchH--HHHHHH-HHHHHHhC--CCEEEEeCCCCCC
Confidence            999999976654  457777 55555541  6777777765554

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=97.54  E-value=0.00033  Score=59.86  Aligned_cols=92  Identities=15%  Similarity=0.314  Sum_probs=67.3

Q ss_pred             hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEeCCCCC-CCCC--
Q 041250          101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFK-AISP--  173 (259)
Q Consensus       101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~-~~~~--  173 (259)
                      ...+++.++  ......|+|||+|.|.++..|++..  -++++++. +..++..++   ..++++++.+|+++ ..+.  
T Consensus        19 ~~~Iv~~~~--~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~   94 (262)
T PF00398_consen   19 ADKIVDALD--LSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDLL   94 (262)
T ss_dssp             HHHHHHHHT--CGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHC
T ss_pred             HHHHHHhcC--CCCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHhh
Confidence            456677776  6678999999999999999999997  67899998 777777666   46899999999998 4433  


Q ss_pred             --ccEEeehhhhccCChHHHHHHHHHHHH
Q 041250          174 --AYAVLLKWILLDWNDEECVKILKKCKE  200 (259)
Q Consensus       174 --~D~~~~~~vlh~~~d~~~~~il~~~~~  200 (259)
                        -...++.+.-++.+    ..++.++..
T Consensus        95 ~~~~~~vv~NlPy~is----~~il~~ll~  119 (262)
T PF00398_consen   95 KNQPLLVVGNLPYNIS----SPILRKLLE  119 (262)
T ss_dssp             SSSEEEEEEEETGTGH----HHHHHHHHH
T ss_pred             cCCceEEEEEecccch----HHHHHHHhh
Confidence              34455555544433    345555555

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=97.51  E-value=0.0004  Score=57.03  Aligned_cols=83  Identities=14%  Similarity=0.181  Sum_probs=59.5

Q ss_pred             EEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCCCC--C-ccEEeehhhhccCC
Q 041250          118 LVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAIS--P-AYAVLLKWILLDWN  187 (259)
Q Consensus       118 vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~--~-~D~~~~~~vlh~~~  187 (259)
                      |.||||-+|.+.+.|+++..--+++..|+ +.-++.|++      ..++|++..+|-++.++  . .|.+++.-    +.
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAG----MG   76 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAG----MG   76 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEE----E-
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEec----CC
Confidence            68999999999999999987778999999 888888776      67899999999888544  3 78888774    33


Q ss_pred             hHHHHHHHHHHHHhccc
Q 041250          188 DEECVKILKKCKEAITR  204 (259)
Q Consensus       188 d~~~~~il~~~~~~L~p  204 (259)
                      -....+||.+....+++
T Consensus        77 G~lI~~ILe~~~~~~~~   93 (205)
T PF04816_consen   77 GELIIEILEAGPEKLSS   93 (205)
T ss_dssp             HHHHHHHHHHTGGGGTT
T ss_pred             HHHHHHHHHhhHHHhcc
Confidence            34455666665555543

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=97.48  E-value=0.0012  Score=64.12  Aligned_cols=111  Identities=12%  Similarity=0.108  Sum_probs=76.8

Q ss_pred             hHHHHHhccccc-CCCCeEEEecCCchHHHHHHHHHC----C--------------------------------------
Q 041250          101 TSVMIQKCKNVF-EGLNSLVDVGGGTGTAAKAIAKAF----P--------------------------------------  137 (259)
Q Consensus       101 ~~~~~~~~~~~~-~~~~~vlDvGgG~G~~~~~l~~~~----p--------------------------------------  137 (259)
                      +..++....  + .+...++|-.||+|+++++.+...    |                                      
T Consensus       178 Aaa~l~~a~--w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~  255 (702)
T PRK11783        178 AAAILLRSG--WPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAEL  255 (702)
T ss_pred             HHHHHHHcC--CCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccccc
Confidence            444555545  4 456899999999999999987631    1                                      


Q ss_pred             CCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-CCC----CccEEeehhhhc-cCC-hHHHHHHHHHHHHhcc
Q 041250          138 KLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AIS----PAYAVLLKWILL-DWN-DEECVKILKKCKEAIT  203 (259)
Q Consensus       138 ~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~----~~D~~~~~~vlh-~~~-d~~~~~il~~~~~~L~  203 (259)
                      ..+++++|+ +.+++.|++      ..++|.+..+|+.+ +.+    .+|+|+.+--.- .+. ..+...+.+.+.+.++
T Consensus       256 ~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk  335 (702)
T PRK11783        256 PSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLK  335 (702)
T ss_pred             CceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHH
Confidence            236899999 899998887      45689999999987 332    389888874332 233 3445566666666655


Q ss_pred             ---cCCCCcEEEEEee
Q 041250          204 ---RDGKKRKVIIKDM  216 (259)
Q Consensus       204 ---p~~~gg~lli~e~  216 (259)
                         +   |+++.++..
T Consensus       336 ~~~~---g~~~~llt~  348 (702)
T PRK11783        336 QQFG---GWNAALFSS  348 (702)
T ss_pred             HhCC---CCeEEEEeC
Confidence               6   777766554

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=97.45  E-value=0.00034  Score=62.38  Aligned_cols=52  Identities=17%  Similarity=0.269  Sum_probs=44.8

Q ss_pred             CeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC
Q 041250          116 NSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK  169 (259)
Q Consensus       116 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~  169 (259)
                      .++||++||+|.++..+++...  +++++|. +++++.+++     ..++++|+.+|..+
T Consensus       199 ~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~  256 (353)
T TIGR02143       199 GDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE  256 (353)
T ss_pred             CcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence            4699999999999999998863  8999998 888888887     34589999999876

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=97.36  E-value=0.002  Score=48.60  Aligned_cols=97  Identities=18%  Similarity=0.311  Sum_probs=66.0

Q ss_pred             EEEecCCchHHHHHHHHHCCC-CeEEEeec-hHHHhhcccCC--CC---eEEEeCCCCC---CCC---CccEEeehhhhc
Q 041250          118 LVDVGGGTGTAAKAIAKAFPK-LECTCFDL-PHVVNGLESDL--VN---LKYVGGDMFK---AIS---PAYAVLLKWILL  184 (259)
Q Consensus       118 vlDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~~--~r---i~~~~~d~~~---~~~---~~D~~~~~~vlh  184 (259)
                      ++|+|||+|... .+....+. ..++++|. +.++..++...  ..   +.+..+|...   +..   .+|++ .....+
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~  129 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL  129 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence            999999999987 44444443 47888898 55565543311  22   5788887764   333   48999 554444


Q ss_pred             cCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCC
Q 041250          185 DWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENR  221 (259)
Q Consensus       185 ~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~  221 (259)
                      ++.+  ....++++.+.++|   +|.+++........
T Consensus       130 ~~~~--~~~~~~~~~~~l~~---~g~~~~~~~~~~~~  161 (257)
T COG0500         130 HLLP--PAKALRELLRVLKP---GGRLVLSDLLRDGL  161 (257)
T ss_pred             hcCC--HHHHHHHHHHhcCC---CcEEEEEeccCCCC
Confidence            4443  56889999999999   89888887765543

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.36  E-value=0.0024  Score=52.10  Aligned_cols=111  Identities=17%  Similarity=0.186  Sum_probs=76.3

Q ss_pred             hhhHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeechHHHhhcccCCCCeEEEeCCCCCC-------
Q 041250           99 LATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKA-------  170 (259)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~~-------  170 (259)
                      +....+.+.+. .+.+..+|+|+|+-.|.++..+++.. +..+++++|+.++-.     ...|.++.+|++.+       
T Consensus        31 ~KL~el~~k~~-i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~-----~~~V~~iq~d~~~~~~~~~l~  104 (205)
T COG0293          31 YKLLELNEKFK-LFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP-----IPGVIFLQGDITDEDTLEKLL  104 (205)
T ss_pred             HHHHHHHHhcC-eecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc-----CCCceEEeeeccCccHHHHHH
Confidence            34556777774 67888999999999999999998875 445699999855442     34599999999983       


Q ss_pred             --CC--CccEEeehh---hhccCC------hHHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 041250          171 --IS--PAYAVLLKW---ILLDWN------DEECVKILKKCKEAITRDGKKRKVIIKDMIK  218 (259)
Q Consensus       171 --~~--~~D~~~~~~---vlh~~~------d~~~~~il~~~~~~L~p~~~gg~lli~e~~~  218 (259)
                        .+  .+|+|+.-.   +--.|.      -.-+...+.-+...|+|   ||.+++-.+--
T Consensus       105 ~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~---~G~fv~K~fqg  162 (205)
T COG0293         105 EALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKP---GGSFVAKVFQG  162 (205)
T ss_pred             HHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCC---CCeEEEEEEeC
Confidence              12  258887332   222222      22234456666678999   88887777643

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.34  E-value=0.00021  Score=54.57  Aligned_cols=68  Identities=19%  Similarity=0.202  Sum_probs=51.6

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCC-eEEEeec-hHHHhhccc----CCCCeEEEeCCCCCCCC--C-ccEEeehhhhc
Q 041250          115 LNSLVDVGGGTGTAAKAIAKAFPKL-ECTCFDL-PHVVNGLES----DLVNLKYVGGDMFKAIS--P-AYAVLLKWILL  184 (259)
Q Consensus       115 ~~~vlDvGgG~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~~~~--~-~D~~~~~~vlh  184 (259)
                      +.++.|+|||.|.++.  +-.+|.. .++++|+ |++++.+.+    ..-.+.+.+.|+.++.+  + ||..++..-+-
T Consensus        49 gkkl~DLgcgcGmLs~--a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppFG  125 (185)
T KOG3420|consen   49 GKKLKDLGCGCGMLSI--AFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPFG  125 (185)
T ss_pred             CcchhhhcCchhhhHH--HhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCCC
Confidence            5789999999999994  4445555 5999999 999998776    34566888888888433  3 89888876543

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=97.33  E-value=0.0011  Score=56.68  Aligned_cols=96  Identities=14%  Similarity=0.216  Sum_probs=57.5

Q ss_pred             CCeEEEecCCchHHHHH-HHHH-CCCCeEEEeec-hHHHhhccc-------CCCCeEEEeCCCCC-C--CCCccEEeehh
Q 041250          115 LNSLVDVGGGTGTAAKA-IAKA-FPKLECTCFDL-PHVVNGLES-------DLVNLKYVGGDMFK-A--ISPAYAVLLKW  181 (259)
Q Consensus       115 ~~~vlDvGgG~G~~~~~-l~~~-~p~~~~~~~D~-~~~~~~a~~-------~~~ri~~~~~d~~~-~--~~~~D~~~~~~  181 (259)
                      +.+|+=||||.=-++.- ++++ .++..++++|+ |++++.+++       ...+++|+.+|..+ +  ...||+|++..
T Consensus       121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa  200 (276)
T PF03059_consen  121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA  200 (276)
T ss_dssp             --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred             cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence            46999999996655544 4544 36788999999 888888876       47899999999986 3  34799999886


Q ss_pred             hhccCChHHHHHHHHHHHHhcccCCCCcEEEEE
Q 041250          182 ILLDWNDEECVKILKKCKEAITRDGKKRKVIIK  214 (259)
Q Consensus       182 vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~  214 (259)
                      ..- .+.++-.+||.++.+.|+|   |..|++=
T Consensus       201 lVg-~~~e~K~~Il~~l~~~m~~---ga~l~~R  229 (276)
T PF03059_consen  201 LVG-MDAEPKEEILEHLAKHMAP---GARLVVR  229 (276)
T ss_dssp             T-S-----SHHHHHHHHHHHS-T---TSEEEEE
T ss_pred             hcc-cccchHHHHHHHHHhhCCC---CcEEEEe
Confidence            553 3334456899999999999   6765554

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=97.33  E-value=0.00058  Score=57.14  Aligned_cols=124  Identities=16%  Similarity=0.124  Sum_probs=79.5

Q ss_pred             HHHHHhcchh--hhHHHHHhcccc---cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCC
Q 041250           90 NEAMASDARL--ATSVMIQKCKNV---FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVN  159 (259)
Q Consensus        90 ~~~m~~~~~~--~~~~~~~~~~~~---~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~r  159 (259)
                      .++|...+..  ..+.+-.-|+..   .+.+.+|+|||||.--++.-.....|+.++++.|+ +..++....    ...+
T Consensus        76 r~lL~~HaST~ERl~~Ld~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~  155 (251)
T PF07091_consen   76 RRLLAGHASTRERLPNLDEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVP  155 (251)
T ss_dssp             HHHHHTSHHHHCCGGGHHHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-C
T ss_pred             HHHHhhccchhhhhhhHHHHHHHHHhcCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCC
Confidence            3466654432  233333333322   34588999999999999999888889999999999 777776665    6788


Q ss_pred             eEEEeCCCCCCCC--CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 041250          160 LKYVGGDMFKAIS--PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIK  218 (259)
Q Consensus       160 i~~~~~d~~~~~~--~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~  218 (259)
                      .+....|.....|  .+|+.++--++|.....+. ..-.++.+.+..    -.++|..+..
T Consensus       156 ~~~~v~Dl~~~~~~~~~DlaLllK~lp~le~q~~-g~g~~ll~~~~~----~~~vVSfPtr  211 (251)
T PF07091_consen  156 HDARVRDLLSDPPKEPADLALLLKTLPCLERQRR-GAGLELLDALRS----PHVVVSFPTR  211 (251)
T ss_dssp             EEEEEE-TTTSHTTSEESEEEEET-HHHHHHHST-THHHHHHHHSCE----SEEEEEEES-
T ss_pred             cceeEeeeeccCCCCCcchhhHHHHHHHHHHHhc-chHHHHHHHhCC----CeEEEecccc
Confidence            8888899999544  4999999999998765442 333445555653    4556655443

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=97.28  E-value=0.00076  Score=53.84  Aligned_cols=95  Identities=20%  Similarity=0.253  Sum_probs=74.7

Q ss_pred             CeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-CCCCccEEeehhhhccCCh
Q 041250          116 NSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AISPAYAVLLKWILLDWND  188 (259)
Q Consensus       116 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~~~~~D~~~~~~vlh~~~d  188 (259)
                      .++.|+|.|+|.++.-.+++  .-+++.++. |.....|++     ...+++++.+|..+ .+..+|++++-..=.-+-+
T Consensus        34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvicEmlDTaLi~  111 (252)
T COG4076          34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVICEMLDTALIE  111 (252)
T ss_pred             hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHHHHhhHHhhc
Confidence            68999999999999888777  347888888 777777776     56899999999998 7777999887654334456


Q ss_pred             HHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250          189 EECVKILKKCKEAITRDGKKRKVIIKD  215 (259)
Q Consensus       189 ~~~~~il~~~~~~L~p~~~gg~lli~e  215 (259)
                      ++.+.+++.+.+-|+-   .++++=.+
T Consensus       112 E~qVpV~n~vleFLr~---d~tiiPq~  135 (252)
T COG4076         112 EKQVPVINAVLEFLRY---DPTIIPQE  135 (252)
T ss_pred             ccccHHHHHHHHHhhc---CCccccHH
Confidence            6678899999888887   67765443

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=97.28  E-value=0.00072  Score=60.49  Aligned_cols=52  Identities=15%  Similarity=0.234  Sum_probs=44.5

Q ss_pred             CeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC
Q 041250          116 NSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK  169 (259)
Q Consensus       116 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~  169 (259)
                      .++||++||+|.++..+++...  +++++|. +.+++.+++     ..++++|+.+|..+
T Consensus       208 ~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~  265 (362)
T PRK05031        208 GDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE  265 (362)
T ss_pred             CeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence            5799999999999999988864  7999998 888888776     34589999999865

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=97.27  E-value=0.00052  Score=56.65  Aligned_cols=97  Identities=11%  Similarity=0.107  Sum_probs=71.2

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-------CCCCeEEEeCCCCC---CCC--CccEEe
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-------DLVNLKYVGGDMFK---AIS--PAYAVL  178 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~ri~~~~~d~~~---~~~--~~D~~~  178 (259)
                      .+...+|||...|-|..+++.+++. ..+++-++- |.+++.|+-       ...+|+.+.||..+   .++  +||+|+
T Consensus       132 ~~~G~rVLDtC~GLGYtAi~a~~rG-A~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi  210 (287)
T COG2521         132 VKRGERVLDTCTGLGYTAIEALERG-AIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAII  210 (287)
T ss_pred             cccCCEeeeeccCccHHHHHHHHcC-CcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEe
Confidence            3567899999999999999999984 237777776 899988875       23589999999988   344  488765


Q ss_pred             ehh-hhccCChHHHHHHHHHHHHhcccCCCCcEEE
Q 041250          179 LKW-ILLDWNDEECVKILKKCKEAITRDGKKRKVI  212 (259)
Q Consensus       179 ~~~-vlh~~~d~~~~~il~~~~~~L~p~~~gg~ll  212 (259)
                      --- =+..-..-....+.+++++.|+|   ||+++
T Consensus       211 HDPPRfS~AgeLYseefY~El~RiLkr---gGrlF  242 (287)
T COG2521         211 HDPPRFSLAGELYSEEFYRELYRILKR---GGRLF  242 (287)
T ss_pred             eCCCccchhhhHhHHHHHHHHHHHcCc---CCcEE
Confidence            221 11111233456799999999999   89875

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.26  E-value=0.00098  Score=51.11  Aligned_cols=53  Identities=21%  Similarity=0.297  Sum_probs=44.2

Q ss_pred             eEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC
Q 041250          117 SLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK  169 (259)
Q Consensus       117 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~  169 (259)
                      +++|||||.|.++..+++.+|+.+++++|. |.+.+.+++     ...+++++...+.+
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~   59 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD   59 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence            489999999999999999999999999998 788777665     23568888776665

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=97.21  E-value=0.00042  Score=55.66  Aligned_cols=109  Identities=17%  Similarity=0.132  Sum_probs=63.9

Q ss_pred             hHHHHHhcccc-cCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeechHHHhhcccCCCCeEEEeCCCCCC--------
Q 041250          101 TSVMIQKCKNV-FEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKA--------  170 (259)
Q Consensus       101 ~~~~~~~~~~~-~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~~--------  170 (259)
                      ...+.+.++.. ..+..++||+||++|.++..++++. +..+++++|+...-     ....+.++.+|++++        
T Consensus         9 L~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~-----~~~~~~~i~~d~~~~~~~~~i~~   83 (181)
T PF01728_consen    9 LYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD-----PLQNVSFIQGDITNPENIKDIRK   83 (181)
T ss_dssp             HHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG-----S-TTEEBTTGGGEEEEHSHHGGG
T ss_pred             HHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccc-----cccceeeeecccchhhHHHhhhh
Confidence            34566666611 1245899999999999999999987 77899999985441     123445555555431        


Q ss_pred             -C----CCccEEeehhhhc---cC--C----hHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250          171 -I----SPAYAVLLKWILL---DW--N----DEECVKILKKCKEAITRDGKKRKVIIKDMI  217 (259)
Q Consensus       171 -~----~~~D~~~~~~vlh---~~--~----d~~~~~il~~~~~~L~p~~~gg~lli~e~~  217 (259)
                       .    ..+|+|++--...   ++  +    -+.+...|.-+.+.|+|   ||.+++--+.
T Consensus        84 ~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~---gG~~v~K~~~  141 (181)
T PF01728_consen   84 LLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKP---GGTFVIKVFK  141 (181)
T ss_dssp             SHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCT---TEEEEEEESS
T ss_pred             hccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcC---CCEEEEEecc
Confidence             1    2488887654221   11  1    12233344445566899   8876665543

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=97.20  E-value=0.0009  Score=54.69  Aligned_cols=91  Identities=16%  Similarity=0.196  Sum_probs=63.8

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCCC-C-CccEEeehhh
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAI-S-PAYAVLLKWI  182 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~-~-~~D~~~~~~v  182 (259)
                      .....+|+|.-||-|.+++.+++..+..+++..|+ |..++..++      ..++|..+.+|..+-. . .+|-|++.. 
T Consensus        99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~l-  177 (200)
T PF02475_consen   99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNL-  177 (200)
T ss_dssp             --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE---
T ss_pred             CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECC-
Confidence            44568999999999999999999777788999999 888877665      5688999999998832 2 589777764 


Q ss_pred             hccCChHHHHHHHHHHHHhcccCCCCcEE
Q 041250          183 LLDWNDEECVKILKKCKEAITRDGKKRKV  211 (259)
Q Consensus       183 lh~~~d~~~~~il~~~~~~L~p~~~gg~l  211 (259)
                          |.. +...|..+.+.+++   ||.+
T Consensus       178 ----p~~-~~~fl~~~~~~~~~---~g~i  198 (200)
T PF02475_consen  178 ----PES-SLEFLDAALSLLKE---GGII  198 (200)
T ss_dssp             ----TSS-GGGGHHHHHHHEEE---EEEE
T ss_pred             ----hHH-HHHHHHHHHHHhcC---CcEE
Confidence                322 34578888888888   6643

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=97.17  E-value=0.0041  Score=57.40  Aligned_cols=103  Identities=16%  Similarity=0.182  Sum_probs=73.5

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCC-CeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC---CCC-CccEEeeh
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPK-LECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK---AIS-PAYAVLLK  180 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~---~~~-~~D~~~~~  180 (259)
                      .....+|||+++|.|.=+..++....+ ..++..|+ +.-+...++     ...++.+...|...   ..+ .||.|++-
T Consensus       111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD  190 (470)
T PRK11933        111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLD  190 (470)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence            456689999999999999999998743 57899998 555544443     45678888888764   234 48988843


Q ss_pred             h-------------hhccCChHHH-------HHHHHHHHHhcccCCCCcEEEEEeee
Q 041250          181 W-------------ILLDWNDEEC-------VKILKKCKEAITRDGKKRKVIIKDMI  217 (259)
Q Consensus       181 ~-------------vlh~~~d~~~-------~~il~~~~~~L~p~~~gg~lli~e~~  217 (259)
                      -             +...|+.++.       .+||.++.+.|+|   ||+|+-....
T Consensus       191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~Lkp---GG~LVYSTCT  244 (470)
T PRK11933        191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKP---GGTLVYSTCT  244 (470)
T ss_pred             CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCC---CcEEEEECCC
Confidence            2             2334554433       6899999999999   8887554443

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=97.10  E-value=0.00093  Score=55.03  Aligned_cols=92  Identities=13%  Similarity=0.202  Sum_probs=67.4

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-CCCCe--EEEeCCCCC-CCC--CccEEeehhhhccC
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-DLVNL--KYVGGDMFK-AIS--PAYAVLLKWILLDW  186 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri--~~~~~d~~~-~~~--~~D~~~~~~vlh~~  186 (259)
                      ....++|||||-|.+...+..+. =-+.+..|. -.|++.++. ..+.|  +...+|-.. ++.  ++|+++.+..+| |
T Consensus        72 ~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslH-W  149 (325)
T KOG2940|consen   72 SFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLH-W  149 (325)
T ss_pred             hCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhh-h
Confidence            35689999999999999999986 226899998 688888876 22333  344555433 444  599999999998 5


Q ss_pred             ChHHHHHHHHHHHHhcccCCCCcEE
Q 041250          187 NDEECVKILKKCKEAITRDGKKRKV  211 (259)
Q Consensus       187 ~d~~~~~il~~~~~~L~p~~~gg~l  211 (259)
                      .++ ...-+.+++.+|||   +|.+
T Consensus       150 ~Nd-LPg~m~~ck~~lKP---Dg~F  170 (325)
T KOG2940|consen  150 TND-LPGSMIQCKLALKP---DGLF  170 (325)
T ss_pred             hcc-CchHHHHHHHhcCC---Cccc
Confidence            443 34567889999999   6743

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.09  E-value=0.0021  Score=56.38  Aligned_cols=101  Identities=13%  Similarity=0.100  Sum_probs=71.2

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhcccCCCCeEEEeCCCCCCC--C-CccEEeehhhhccCCh
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAI--S-PAYAVLLKWILLDWND  188 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~~~--~-~~D~~~~~~vlh~~~d  188 (259)
                      +....++||+||++|.++..++++  +.+++++|..++-+... ..++|+...+|-+...  + .+|++++--+.   .+
T Consensus       209 ~~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~~~L~-~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve---~P  282 (357)
T PRK11760        209 LAPGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMAQSLM-DTGQVEHLRADGFKFRPPRKNVDWLVCDMVE---KP  282 (357)
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcCHhhh-CCCCEEEEeccCcccCCCCCCCCEEEEeccc---CH
Confidence            356789999999999999999998  56999999755444433 6789999999998833  3 48988877653   22


Q ss_pred             HHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCC
Q 041250          189 EECVKILKKCKEAITRDGKKRKVIIKDMIKENRKK  223 (259)
Q Consensus       189 ~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~  223 (259)
                      .   ++.+-+.+-+..+  -.+-.|+..-+|....
T Consensus       283 ~---rva~lm~~Wl~~g--~cr~aIfnLKlpmk~r  312 (357)
T PRK11760        283 A---RVAELMAQWLVNG--WCREAIFNLKLPMKKR  312 (357)
T ss_pred             H---HHHHHHHHHHhcC--cccEEEEEEEcCCCCC
Confidence            2   4455555556541  2456777777765543

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=97.07  E-value=0.0049  Score=54.18  Aligned_cols=94  Identities=20%  Similarity=0.362  Sum_probs=71.9

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCC-eEEEeec-hHHHhhccc------------CCCCeEEEeCCCCCC-C--C-Cc
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKL-ECTCFDL-PHVVNGLES------------DLVNLKYVGGDMFKA-I--S-PA  174 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~------------~~~ri~~~~~d~~~~-~--~-~~  174 (259)
                      ++..++|=+|||.|..++++.+ ||+. +++.+|+ |.|++.++.            ..+|++++..|.++- .  . .|
T Consensus       288 ~~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f  366 (508)
T COG4262         288 RGARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF  366 (508)
T ss_pred             cccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence            5667999999999999999875 7865 6999999 999999884            468999999999982 2  1 48


Q ss_pred             cEEeehhhhccCChH--------HHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250          175 YAVLLKWILLDWNDE--------ECVKILKKCKEAITRDGKKRKVIIKD  215 (259)
Q Consensus       175 D~~~~~~vlh~~~d~--------~~~~il~~~~~~L~p~~~gg~lli~e  215 (259)
                      |.++.-     ++|.        ....+.+-+++.|++   +|.+++.-
T Consensus       367 D~vIVD-----l~DP~tps~~rlYS~eFY~ll~~~l~e---~Gl~VvQa  407 (508)
T COG4262         367 DVVIVD-----LPDPSTPSIGRLYSVEFYRLLSRHLAE---TGLMVVQA  407 (508)
T ss_pred             cEEEEe-----CCCCCCcchhhhhhHHHHHHHHHhcCc---CceEEEec
Confidence            887764     3322        235677888899999   67655543

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=97.03  E-value=0.0014  Score=52.91  Aligned_cols=100  Identities=12%  Similarity=0.092  Sum_probs=69.1

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCC---C---C-CccEEee
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKA---I---S-PAYAVLL  179 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~---~---~-~~D~~~~  179 (259)
                      ...++||+=||+|.++.+.+.+. .-+++.+|. +..+...++      ..+++..+..|.+..   .   . .||+|++
T Consensus        42 ~g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl  120 (183)
T PF03602_consen   42 EGARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL  120 (183)
T ss_dssp             TT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred             CCCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence            36899999999999999999884 237999998 777776665      445799999997651   1   2 5999998


Q ss_pred             hhhhccCChHHHHHHHHHHH--HhcccCCCCcEEEEEeeeecC
Q 041250          180 KWILLDWNDEECVKILKKCK--EAITRDGKKRKVIIKDMIKEN  220 (259)
Q Consensus       180 ~~vlh~~~d~~~~~il~~~~--~~L~p~~~gg~lli~e~~~~~  220 (259)
                      ---......  ..+++..+.  ..|++    +.++|+|.....
T Consensus       121 DPPY~~~~~--~~~~l~~l~~~~~l~~----~~~ii~E~~~~~  157 (183)
T PF03602_consen  121 DPPYAKGLY--YEELLELLAENNLLNE----DGLIIIEHSKKE  157 (183)
T ss_dssp             --STTSCHH--HHHHHHHHHHTTSEEE----EEEEEEEEETTS
T ss_pred             CCCcccchH--HHHHHHHHHHCCCCCC----CEEEEEEecCCC
Confidence            865543322  245666665  67887    668888886653

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=97.00  E-value=0.0034  Score=54.82  Aligned_cols=102  Identities=15%  Similarity=0.177  Sum_probs=67.2

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHH-------CCCCeEEEeec-hHHHhhccc-------CCCCeEEEeCCCCC-C-CC--
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKA-------FPKLECTCFDL-PHVVNGLES-------DLVNLKYVGGDMFK-A-IS--  172 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~-------~p~~~~~~~D~-~~~~~~a~~-------~~~ri~~~~~d~~~-~-~~--  172 (259)
                      .....+|+|-+||+|.++.++.+.       .+..++.++|+ +.++..++.       ......+..+|.+. + ..  
T Consensus        44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~  123 (311)
T PF02384_consen   44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKN  123 (311)
T ss_dssp             T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST
T ss_pred             ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence            345568999999999999998874       47789999999 666666553       23345688889887 2 22  


Q ss_pred             -CccEEeehhhh--ccCChH-----------------HHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          173 -PAYAVLLKWIL--LDWNDE-----------------ECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       173 -~~D~~~~~~vl--h~~~d~-----------------~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                       .||+|+..--+  ..|.+.                 .-...+..+.+.|++   ||++.++-+
T Consensus       124 ~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~---~G~~~~Ilp  184 (311)
T PF02384_consen  124 QKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKP---GGRAAIILP  184 (311)
T ss_dssp             --EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred             cccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhccc---ccceeEEec
Confidence             59999887432  212111                 112478889999999   898755544

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function

Probab=96.99  E-value=0.0029  Score=54.66  Aligned_cols=102  Identities=23%  Similarity=0.346  Sum_probs=75.8

Q ss_pred             CCeEEEecCCchHHHHHHHHHC--------------------CCCeEEEeec---hHHHhhccc----------------
Q 041250          115 LNSLVDVGGGTGTAAKAIAKAF--------------------PKLECTCFDL---PHVVNGLES----------------  155 (259)
Q Consensus       115 ~~~vlDvGgG~G~~~~~l~~~~--------------------p~~~~~~~D~---~~~~~~a~~----------------  155 (259)
                      ..+||-||||.|.-..+++..+                    |.++++.+|+   ..++.....                
T Consensus        87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~  166 (315)
T PF11312_consen   87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN  166 (315)
T ss_pred             CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence            3699999999998888887665                    2368999998   566654332                


Q ss_pred             ------CCCCeEEEeCCCCC-CC---------CCccEEeehhhhccC---ChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          156 ------DLVNLKYVGGDMFK-AI---------SPAYAVLLKWILLDW---NDEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       156 ------~~~ri~~~~~d~~~-~~---------~~~D~~~~~~vlh~~---~d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                            ..-+++|.+.|..+ ..         |..++|.+-+.++.+   +-.+..++|+++-+.++|   |..|+|+|.
T Consensus       167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~---GslLLVvDS  243 (315)
T PF11312_consen  167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPP---GSLLLVVDS  243 (315)
T ss_pred             cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCC---CcEEEEEcC
Confidence                  12367899999987 22         136788877777653   456678999999999999   999999996


Q ss_pred             eec
Q 041250          217 IKE  219 (259)
Q Consensus       217 ~~~  219 (259)
                      --.
T Consensus       244 pGS  246 (315)
T PF11312_consen  244 PGS  246 (315)
T ss_pred             CCC
Confidence            433

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=96.87  E-value=0.0052  Score=55.10  Aligned_cols=91  Identities=12%  Similarity=0.167  Sum_probs=71.0

Q ss_pred             CeEEEecCCchHHHHHHHHHCCCC-eEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCC--C--CCccEEeehhhhc
Q 041250          116 NSLVDVGGGTGTAAKAIAKAFPKL-ECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKA--I--SPAYAVLLKWILL  184 (259)
Q Consensus       116 ~~vlDvGgG~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~--~--~~~D~~~~~~vlh  184 (259)
                      .+|||.-||+|..+++++++.++. +++..|+ |.+++.+++     ...++++..+|...-  .  ..||+|.+-- + 
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f-  123 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F-  123 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C-
Confidence            589999999999999999987654 6999999 888887776     335688999998862  2  2599998865 3 


Q ss_pred             cCChHHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250          185 DWNDEECVKILKKCKEAITRDGKKRKVIIKD  215 (259)
Q Consensus       185 ~~~d~~~~~il~~~~~~L~p~~~gg~lli~e  215 (259)
                      ..+    ..++..+.+.+++   +|.|.+.-
T Consensus       124 Gs~----~~fld~al~~~~~---~glL~vTa  147 (374)
T TIGR00308       124 GTP----APFVDSAIQASAE---RGLLLVTA  147 (374)
T ss_pred             CCc----HHHHHHHHHhccc---CCEEEEEe
Confidence            222    2578888888888   88888873

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=96.75  E-value=0.021  Score=46.79  Aligned_cols=100  Identities=13%  Similarity=0.092  Sum_probs=78.2

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhccc----CCCCeEEEeCCCCC---CCC--CccEEeehhh
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES----DLVNLKYVGGDMFK---AIS--PAYAVLLKWI  182 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~----~~~ri~~~~~d~~~---~~~--~~D~~~~~~v  182 (259)
                      ..++.+||.||-|-|.....+.++.|..+.|+---|.|....+.    ..++|....|-..+   .+|  .||-|+.-..
T Consensus        99 ~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy  178 (271)
T KOG1709|consen   99 STKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTY  178 (271)
T ss_pred             hhCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeech
Confidence            36789999999999999999999999988888878999988877    56888888886555   344  4887766532


Q ss_pred             -hccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250          183 -LLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI  217 (259)
Q Consensus       183 -lh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~  217 (259)
                       =|   -++.....+.+.+.|||   +|.+-.++..
T Consensus       179 ~e~---yEdl~~~hqh~~rLLkP---~gv~SyfNg~  208 (271)
T KOG1709|consen  179 SEL---YEDLRHFHQHVVRLLKP---EGVFSYFNGL  208 (271)
T ss_pred             hhH---HHHHHHHHHHHhhhcCC---CceEEEecCc
Confidence             11   15577889999999999   8887655543

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=96.75  E-value=0.0011  Score=48.20  Aligned_cols=91  Identities=13%  Similarity=0.195  Sum_probs=40.1

Q ss_pred             EEecCCchHHHHHHHHHCCCC---eEEEeec-h---HHHhhccc--CCCCeEEEeCCCCCC---CC--CccEEeehhhhc
Q 041250          119 VDVGGGTGTAAKAIAKAFPKL---ECTCFDL-P---HVVNGLES--DLVNLKYVGGDMFKA---IS--PAYAVLLKWILL  184 (259)
Q Consensus       119 lDvGgG~G~~~~~l~~~~p~~---~~~~~D~-~---~~~~~a~~--~~~ri~~~~~d~~~~---~~--~~D~~~~~~vlh  184 (259)
                      |+||+..|..+..+++..+..   +++++|. +   ...+..++  ..++++++.++..+.   ++  ++|++++-. -|
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-~H   79 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-DH   79 (106)
T ss_dssp             --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred             CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-CC
Confidence            689999999999988876544   5899998 4   23333333  567899999999762   22  588877653 22


Q ss_pred             cCChHHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250          185 DWNDEECVKILKKCKEAITRDGKKRKVIIKD  215 (259)
Q Consensus       185 ~~~d~~~~~il~~~~~~L~p~~~gg~lli~e  215 (259)
                      .  .+....-++.+.+.|+|   ||.|++.|
T Consensus        80 ~--~~~~~~dl~~~~~~l~~---ggviv~dD  105 (106)
T PF13578_consen   80 S--YEAVLRDLENALPRLAP---GGVIVFDD  105 (106)
T ss_dssp             ---HHHHHHHHHHHGGGEEE---EEEEEEE-
T ss_pred             C--HHHHHHHHHHHHHHcCC---CeEEEEeC
Confidence            2  24566789999999999   77766655

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=96.72  E-value=0.0042  Score=55.86  Aligned_cols=100  Identities=13%  Similarity=0.121  Sum_probs=77.4

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCC-eEEEeec-hHHHhhccc-------CCCCeEEEeCCCCCC----CC---CccEEe
Q 041250          115 LNSLVDVGGGTGTAAKAIAKAFPKL-ECTCFDL-PHVVNGLES-------DLVNLKYVGGDMFKA----IS---PAYAVL  178 (259)
Q Consensus       115 ~~~vlDvGgG~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~-------~~~ri~~~~~d~~~~----~~---~~D~~~  178 (259)
                      ..+|||+=|=||.++...+..  +. ++|.+|+ ..+++.|++       ..++++|+.+|.|+-    ..   .||+|+
T Consensus       218 GkrvLNlFsYTGgfSv~Aa~g--GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi  295 (393)
T COG1092         218 GKRVLNLFSYTGGFSVHAALG--GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII  295 (393)
T ss_pred             CCeEEEecccCcHHHHHHHhc--CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence            788999999999999999887  55 8999999 788888887       357899999999982    12   599999


Q ss_pred             ehh-hhcc-----CC-hHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250          179 LKW-ILLD-----WN-DEECVKILKKCKEAITRDGKKRKVIIKDMIKE  219 (259)
Q Consensus       179 ~~~-vlh~-----~~-d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~  219 (259)
                      +-- .+-.     |+ ..+-..++..+.+.|+|   ||.++++.....
T Consensus       296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~p---gG~l~~~s~~~~  340 (393)
T COG1092         296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAP---GGTLVTSSCSRH  340 (393)
T ss_pred             ECCcccccCcccchhHHHHHHHHHHHHHHHcCC---CCEEEEEecCCc
Confidence            864 2211     22 12235788889999999   899888876443

>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family

Probab=96.71  E-value=0.013  Score=49.94  Aligned_cols=102  Identities=19%  Similarity=0.144  Sum_probs=77.1

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhccc--------CCCCeEEEeCCCCCCCC------C-----
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES--------DLVNLKYVGGDMFKAIS------P-----  173 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~--------~~~ri~~~~~d~~~~~~------~-----  173 (259)
                      .+...||.+|||-=.....+... +++++.-+|+|++++.-++        ...+..++..|+...+.      +     
T Consensus        80 ~g~~qvV~LGaGlDTr~~Rl~~~-~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~  158 (260)
T TIGR00027        80 AGIRQVVILGAGLDTRAYRLPWP-DGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTA  158 (260)
T ss_pred             cCCcEEEEeCCccccHHHhcCCC-CCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCC
Confidence            34668999999998888877322 2578888888999875544        35789999999974221      2     


Q ss_pred             ccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250          174 AYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKE  219 (259)
Q Consensus       174 ~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~  219 (259)
                      .-++++--++.+++.+++.++|+.+.+...|   |+ .++.|.+.+
T Consensus       159 ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~---gs-~l~~d~~~~  200 (260)
T TIGR00027       159 PTAWLWEGLLMYLTEEAVDALLAFIAELSAP---GS-RLAFDYVRP  200 (260)
T ss_pred             CeeeeecchhhcCCHHHHHHHHHHHHHhCCC---Cc-EEEEEeccc
Confidence            3367777899999999999999999998877   55 566777655

This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=96.70  E-value=0.008  Score=56.49  Aligned_cols=68  Identities=13%  Similarity=0.148  Sum_probs=48.5

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCC--------CeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCC--------C
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAFPK--------LECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKA--------I  171 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~p~--------~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~--------~  171 (259)
                      ...+|+|.|||+|.++.+++++.+.        ..++++|+ +.++..++.     ....+.....|+...        .
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~  110 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL  110 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence            4568999999999999999887652        46899999 777777665     112455566665531        1


Q ss_pred             CCccEEeehh
Q 041250          172 SPAYAVLLKW  181 (259)
Q Consensus       172 ~~~D~~~~~~  181 (259)
                      ++||+|+.+-
T Consensus       111 ~~fD~IIgNP  120 (524)
T TIGR02987       111 DLFDIVITNP  120 (524)
T ss_pred             CcccEEEeCC
Confidence            2589998874

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=96.64  E-value=0.0084  Score=52.12  Aligned_cols=67  Identities=12%  Similarity=0.079  Sum_probs=55.7

Q ss_pred             hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCC
Q 041250          101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK  169 (259)
Q Consensus       101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~  169 (259)
                      ...+++.+.  ..+...+||.=+|.|..+..++++.|+.+++++|. |.++..+++    ..+|++++.++|.+
T Consensus         9 l~Evl~~L~--~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~   80 (305)
T TIGR00006         9 LDEVVEGLN--IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFAN   80 (305)
T ss_pred             HHHHHHhcC--cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHH
Confidence            455666665  55667999999999999999999988899999999 899988876    34589999888875

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=96.62  E-value=0.022  Score=50.78  Aligned_cols=100  Identities=14%  Similarity=0.117  Sum_probs=69.7

Q ss_pred             hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCC---------------------------------------eE
Q 041250          101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKL---------------------------------------EC  141 (259)
Q Consensus       101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~---------------------------------------~~  141 (259)
                      +..++..-.  +.+...++|==||+|+++++.+...+++                                       .+
T Consensus       180 AaAil~lag--w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~  257 (381)
T COG0116         180 AAAILLLAG--WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPII  257 (381)
T ss_pred             HHHHHHHcC--CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceE
Confidence            344555555  5555799999999999999998877532                                       26


Q ss_pred             EEeec-hHHHhhccc------CCCCeEEEeCCCCC-CCC--CccEEeehhhhcc-CChHHHH-HHHHHHHHhc
Q 041250          142 TCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AIS--PAYAVLLKWILLD-WNDEECV-KILKKCKEAI  202 (259)
Q Consensus       142 ~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~--~~D~~~~~~vlh~-~~d~~~~-~il~~~~~~L  202 (259)
                      +++|+ +.+++.|+.      ..+.|+|..+|+.. +-|  .+|+++++--.-. +.++..+ ++.+.+.+.|
T Consensus       258 ~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~l  330 (381)
T COG0116         258 YGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTL  330 (381)
T ss_pred             EEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHH
Confidence            79999 899988876      67999999999987 444  5898887743221 2333333 3555555444

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=96.61  E-value=0.017  Score=47.38  Aligned_cols=69  Identities=10%  Similarity=0.087  Sum_probs=57.2

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCCCC---CccEEeehh
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAIS---PAYAVLLKW  181 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~---~~D~~~~~~  181 (259)
                      +...++.||||-++.+.+.+.+.+|...++..|+ +..++.|.+      ..+|++...+|-+.++.   ..|++++..
T Consensus        15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAG   93 (226)
T COG2384          15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAG   93 (226)
T ss_pred             HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeC
Confidence            3445699999999999999999999999999998 766666655      78999999999988543   488887764

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=96.51  E-value=0.0037  Score=53.00  Aligned_cols=99  Identities=18%  Similarity=0.215  Sum_probs=61.2

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCe-EEEeec-hHHHhhccc---------------------------------CCC
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAFPKLE-CTCFDL-PHVVNGLES---------------------------------DLV  158 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~---------------------------------~~~  158 (259)
                      +..++||||+|.-.+-  +..+.+..+ ++..|. +.-.+..++                                 ...
T Consensus        56 ~g~~llDiGsGPtiy~--~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~  133 (256)
T PF01234_consen   56 KGETLLDIGSGPTIYQ--LLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR  133 (256)
T ss_dssp             -EEEEEEES-TT--GG--GTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHh--hhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence            4568999999996553  333334443 777776 433332111                                 012


Q ss_pred             CeE-EEeCCCCCC--C------CC-ccEEeehhhhccC--ChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250          159 NLK-YVGGDMFKA--I------SP-AYAVLLKWILLDW--NDEECVKILKKCKEAITRDGKKRKVIIKDMI  217 (259)
Q Consensus       159 ri~-~~~~d~~~~--~------~~-~D~~~~~~vlh~~--~d~~~~~il~~~~~~L~p~~~gg~lli~e~~  217 (259)
                      .|+ ++..|.+++  .      |+ +|++++..+|-.-  +.++=.+.++++.+.|+|   ||.|+++...
T Consensus       134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkp---GG~Lil~~~l  201 (256)
T PF01234_consen  134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKP---GGHLILAGVL  201 (256)
T ss_dssp             HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEE---EEEEEEEEES
T ss_pred             hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCC---CcEEEEEEEc
Confidence            344 567788872  2      33 9999999888754  345667899999999999   8988887763

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.40  E-value=0.024  Score=46.90  Aligned_cols=98  Identities=13%  Similarity=0.149  Sum_probs=72.8

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCC-CeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCCC----C-----Cc
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPK-LECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAI----S-----PA  174 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~----~-----~~  174 (259)
                      .-++++.+|||.=+|.-+.+++.+.|. .+++.+|+ ++..+.+.+      ...+|++++++..+.+    +     .|
T Consensus        71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tf  150 (237)
T KOG1663|consen   71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTF  150 (237)
T ss_pred             HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCce
Confidence            455789999999999999999998875 47899998 444444443      6789999999888721    1     38


Q ss_pred             cEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 041250          175 YAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIK  218 (259)
Q Consensus       175 D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~  218 (259)
                      |.+++-    +|.+... ..+.++.+.+++   || ++++|.++
T Consensus       151 DfaFvD----adK~nY~-~y~e~~l~Llr~---GG-vi~~DNvl  185 (237)
T KOG1663|consen  151 DFAFVD----ADKDNYS-NYYERLLRLLRV---GG-VIVVDNVL  185 (237)
T ss_pred             eEEEEc----cchHHHH-HHHHHHHhhccc---cc-EEEEeccc
Confidence            888775    3555544 888999999999   55 55555543

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=96.36  E-value=0.03  Score=47.46  Aligned_cols=97  Identities=18%  Similarity=0.208  Sum_probs=70.4

Q ss_pred             hhcCchHHHHHHHHHHhcchh----hhHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeec-hHHHhh
Q 041250           79 AGDESKLNNFFNEAMASDARL----ATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNG  152 (259)
Q Consensus        79 l~~~~~~~~~f~~~m~~~~~~----~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~  152 (259)
                      ++..||+|   ..+|-..++.    ....|+..++  .....+|++-|.|+|.++.++++.- |..+..-+|. ..-.++
T Consensus        71 L~PTpELW---Tl~LphRTQI~Yt~Dia~I~~~L~--i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~k  145 (314)
T KOG2915|consen   71 LQPTPELW---TLALPHRTQILYTPDIAMILSMLE--IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEK  145 (314)
T ss_pred             ecCChHHh---hhhccCcceEEecccHHHHHHHhc--CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHH
Confidence            44566654   4455544442    2345677777  7888999999999999999999975 8889999998 333344


Q ss_pred             ccc------CCCCeEEEeCCCCC-CCC----CccEEeeh
Q 041250          153 LES------DLVNLKYVGGDMFK-AIS----PAYAVLLK  180 (259)
Q Consensus       153 a~~------~~~ri~~~~~d~~~-~~~----~~D~~~~~  180 (259)
                      |.+      ..+++.+...|... .++    .+|.|++-
T Consensus       146 a~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~~aDaVFLD  184 (314)
T KOG2915|consen  146 ALEEFREHGIGDNVTVTHRDVCGSGFLIKSLKADAVFLD  184 (314)
T ss_pred             HHHHHHHhCCCcceEEEEeecccCCccccccccceEEEc
Confidence            444      68999999999987 333    38888764

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=96.32  E-value=0.0032  Score=45.67  Aligned_cols=31  Identities=19%  Similarity=0.270  Sum_probs=26.9

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL  146 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~  146 (259)
                      .....||||||+|.+..-|.+.  +.++.++|.
T Consensus        58 ~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~   88 (112)
T PF07757_consen   58 KFQGFVDLGCGNGLLVYILNSE--GYPGWGIDA   88 (112)
T ss_pred             CCCceEEccCCchHHHHHHHhC--CCCcccccc
Confidence            4678999999999999999887  567899995

; GO: 0008168 methyltransferase activity

>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=96.32  E-value=0.014  Score=50.81  Aligned_cols=98  Identities=18%  Similarity=0.222  Sum_probs=74.4

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeechHHHhhccc--------CCCCeEEEeCCCCC-CCC------Ccc-
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDLPHVVNGLES--------DLVNLKYVGGDMFK-AIS------PAY-  175 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~--------~~~ri~~~~~d~~~-~~~------~~D-  175 (259)
                      .+...||-+|||-=.-+..+-  +| ++++.-+|+|++++.=++        ...++++++.|+++ +++      +|| 
T Consensus        91 ~g~~qvViLgaGLDTRayRl~--~~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~  168 (297)
T COG3315          91 AGIRQVVILGAGLDTRAYRLD--WPKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDR  168 (297)
T ss_pred             hcccEEEEeccccccceeecC--CCCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCc
Confidence            446789999999766655543  33 477888888999986544        33599999999995 544      233 


Q ss_pred             ----EEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          176 ----AVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       176 ----~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                          ++++-.++.+++.+++.++|.+|.....|   |..++ .+.
T Consensus       169 ~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~---gS~~~-~~~  209 (297)
T COG3315         169 SRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAP---GSRVA-FDY  209 (297)
T ss_pred             CCCeEEEeccccccCCHHHHHHHHHHHHHhCCC---CceEE-Eec
Confidence                67788899999999999999999999998   55544 444

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=96.27  E-value=0.032  Score=44.75  Aligned_cols=103  Identities=17%  Similarity=0.214  Sum_probs=64.4

Q ss_pred             HHHhcccccCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeechHHHhhcccCCCCeEEEeC-CCCCC---------CC
Q 041250          104 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDLPHVVNGLESDLVNLKYVGG-DMFKA---------IS  172 (259)
Q Consensus       104 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~ri~~~~~-d~~~~---------~~  172 (259)
                      +-+.|. .+++..+|+|+||-.|.++.-..++. |+..+.++|+-...     ....+.++.+ |+.+|         .|
T Consensus        60 indKy~-~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~-----p~~Ga~~i~~~dvtdp~~~~ki~e~lp  133 (232)
T KOG4589|consen   60 INDKYR-FLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE-----PPEGATIIQGNDVTDPETYRKIFEALP  133 (232)
T ss_pred             ehhhcc-ccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc-----CCCCcccccccccCCHHHHHHHHHhCC
Confidence            344454 35778999999999999999988875 99999999984443     2234444444 55543         34


Q ss_pred             --CccEEeehhhhccC----------ChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          173 --PAYAVLLKWILLDW----------NDEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       173 --~~D~~~~~~vlh~~----------~d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                        ..|+|+.- ..|+-          .-+-|..+|.-....+.|   +|.+++--+
T Consensus       134 ~r~VdvVlSD-MapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p---~g~fvcK~w  185 (232)
T KOG4589|consen  134 NRPVDVVLSD-MAPNATGVRIRDHYRSIELCDSALLFALTLLIP---NGSFVCKLW  185 (232)
T ss_pred             CCcccEEEec-cCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCC---CcEEEEEEe
Confidence              36766543 23322          223344445444456677   787665544

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=96.25  E-value=0.015  Score=50.56  Aligned_cols=67  Identities=16%  Similarity=0.171  Sum_probs=51.7

Q ss_pred             hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCC
Q 041250          101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK  169 (259)
Q Consensus       101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~  169 (259)
                      ...+++.+.  ..+...+||.=-|.|.++.++++++|+.+++++|. |.+++.+++    ..+|+.++.++|-+
T Consensus         9 l~Evl~~L~--~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~   80 (310)
T PF01795_consen    9 LKEVLEALN--PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSN   80 (310)
T ss_dssp             HHHHHHHHT----TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGG
T ss_pred             HHHHHHhhC--cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHH
Confidence            456666666  66778999999999999999999999999999999 999988876    35899999998865

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=96.22  E-value=0.034  Score=47.48  Aligned_cols=92  Identities=15%  Similarity=0.176  Sum_probs=66.2

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeech-HH-------Hhh---ccc--------------------------
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLP-HV-------VNG---LES--------------------------  155 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~-~~-------~~~---a~~--------------------------  155 (259)
                      ++..+||-=|||-|.++.+++++  +..+.+-+.+ .|       +..   ..+                          
T Consensus        55 ~~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP  132 (270)
T PF07942_consen   55 RSKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP  132 (270)
T ss_pred             CCccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence            34578999999999999999999  5566776763 11       121   111                          


Q ss_pred             ---------CCCCeEEEeCCCCC--CCC----CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEE
Q 041250          156 ---------DLVNLKYVGGDMFK--AIS----PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKV  211 (259)
Q Consensus       156 ---------~~~ri~~~~~d~~~--~~~----~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~l  211 (259)
                               ...+++...|||.+  +.+    .+|+|+..+.+.-  .......|..|.+.|+|   ||..
T Consensus       133 Dv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDT--A~Ni~~Yi~tI~~lLkp---gG~W  198 (270)
T PF07942_consen  133 DVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDT--AENIIEYIETIEHLLKP---GGYW  198 (270)
T ss_pred             CcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeec--hHHHHHHHHHHHHHhcc---CCEE
Confidence                     13578899999998  333    4999998855422  34478999999999999   7743

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=96.18  E-value=0.03  Score=45.16  Aligned_cols=108  Identities=11%  Similarity=0.104  Sum_probs=71.0

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeechHHHhh-----------ccc-CCCCeEEEeCCCCC-CCC-CccE
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDLPHVVNG-----------LES-DLVNLKYVGGDMFK-AIS-PAYA  176 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~~~~~~~-----------a~~-~~~ri~~~~~d~~~-~~~-~~D~  176 (259)
                      +....+|+|+=.|.|.+..-+.... |...+..+--.+....           +++ ...+++.+..+... ..| +.|+
T Consensus        46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d~  125 (238)
T COG4798          46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLDL  125 (238)
T ss_pred             cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCcccc
Confidence            5678899999999999999888754 4444443321122111           111 34566666666655 333 4777


Q ss_pred             Eeehh---hhcc--CChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCC
Q 041250          177 VLLKW---ILLD--WNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRK  222 (259)
Q Consensus       177 ~~~~~---vlh~--~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~  222 (259)
                      +....   .+|.  +....+.++.+.++++|||   ||.++|.|.......
T Consensus       126 ~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKP---GGv~~V~dH~a~pG~  173 (238)
T COG4798         126 VPTAQNYHDMHNKNIHPATAAKVNAAVFKALKP---GGVYLVEDHRADPGS  173 (238)
T ss_pred             cccchhhhhhhccccCcchHHHHHHHHHHhcCC---CcEEEEEeccccCCC
Confidence            76644   4442  3456678999999999999   999999888766543

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=96.08  E-value=0.039  Score=46.22  Aligned_cols=141  Identities=18%  Similarity=0.289  Sum_probs=93.9

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCC----CeEEEeech-HHHhh-ccc-----CCCCeEEEeCCCCCC---CCC---c
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPK----LECTCFDLP-HVVNG-LES-----DLVNLKYVGGDMFKA---ISP---A  174 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~----~~~~~~D~~-~~~~~-a~~-----~~~ri~~~~~d~~~~---~~~---~  174 (259)
                      ..+..+++|+|.|+-.=...+...+.+    ++++-+|+. .++.. ++.     ..-.+.-+++|+..+   .|+   =
T Consensus        76 ~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~R  155 (321)
T COG4301          76 ITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRR  155 (321)
T ss_pred             hhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeE
Confidence            456889999999999988888887766    789999994 44432 222     334455577888763   342   2


Q ss_pred             cEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEE-eeeecCCCCCchhh---hhhhhhhhhhhhccC---cccc
Q 041250          175 YAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIK-DMIKENRKKDYKSI---ETQLFFEMFMMVLLT---GTER  247 (259)
Q Consensus       175 D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~-e~~~~~~~~~~~~~---~~~~~~d~~m~~~~~---g~~r  247 (259)
                      =.+++...|-++++++|..+|..++.+|.|   |-.+++- |...+...-...+.   .....|+++|+...|   |.-.
T Consensus       156 l~~flGStlGN~tp~e~~~Fl~~l~~a~~p---Gd~~LlGvDl~k~Ae~Le~AYdDp~gVTa~FnlNvLa~lNr~f~~nF  232 (321)
T COG4301         156 LFVFLGSTLGNLTPGECAVFLTQLRGALRP---GDYFLLGVDLRKPAERLEAAYDDPQGVTAEFNLNVLAHLNRVFGGNF  232 (321)
T ss_pred             EEEEecccccCCChHHHHHHHHHHHhcCCC---cceEEEeccccCHHHHHHHhhcCccchHHHHHHHHHHHHHHHhccCC
Confidence            356677899999999999999999999999   6666554 33333222111110   124678899887632   2336


Q ss_pred             CHHHHHHH
Q 041250          248 DEKEWAKI  255 (259)
Q Consensus       248 t~~e~~~l  255 (259)
                      ...+|+.+
T Consensus       233 D~~dfeh~  240 (321)
T COG4301         233 DVDDFEHV  240 (321)
T ss_pred             CcchhhhH
Confidence            66666543

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=95.93  E-value=0.097  Score=46.12  Aligned_cols=100  Identities=13%  Similarity=0.069  Sum_probs=75.5

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeC-CCCC-CCCC--ccEEeehh
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGG-DMFK-AISP--AYAVLLKW  181 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~-d~~~-~~~~--~D~~~~~~  181 (259)
                      ...+..|+|==||||.++++..--  ++++++.|+ ..++..++.     ..+...+... |... |+++  +|.|..-.
T Consensus       195 v~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDP  272 (347)
T COG1041         195 VKRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDP  272 (347)
T ss_pred             cccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecC
Confidence            455679999999999999998877  789999999 778887776     2344545555 8887 7774  88887653


Q ss_pred             hhcc------CC-hHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          182 ILLD------WN-DEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       182 vlh~------~~-d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      -.--      -. ++--.++|..+.++|++   ||++++.-+
T Consensus       273 PYGrst~~~~~~l~~Ly~~~le~~~evLk~---gG~~vf~~p  311 (347)
T COG1041         273 PYGRSTKIKGEGLDELYEEALESASEVLKP---GGRIVFAAP  311 (347)
T ss_pred             CCCcccccccccHHHHHHHHHHHHHHHhhc---CcEEEEecC
Confidence            2211      11 45567899999999999   898887776

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.91  E-value=0.024  Score=43.61  Aligned_cols=99  Identities=16%  Similarity=0.152  Sum_probs=66.9

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-CCCCccEEeehhhhc
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AISPAYAVLLKWILL  184 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~~~D~~~~~~vlh  184 (259)
                      ....+++|+|.|.|....+.++.. -...+++++ |-.+.-++-      ...+.+|..-|+++ ++..+..+++.-+=.
T Consensus        71 n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy~~vviFgaes  149 (199)
T KOG4058|consen   71 NPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDYRNVVIFGAES  149 (199)
T ss_pred             CCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccceEEEeehHH
Confidence            345799999999999998888764 346889998 555544332      57889999999998 666554433332111


Q ss_pred             cCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecC
Q 041250          185 DWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKEN  220 (259)
Q Consensus       185 ~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~  220 (259)
                      -++     .+-.+++.-|+.   +.+++-+-+-+|.
T Consensus       150 ~m~-----dLe~KL~~E~p~---nt~vvacRFPLP~  177 (199)
T KOG4058|consen  150 VMP-----DLEDKLRTELPA---NTRVVACRFPLPT  177 (199)
T ss_pred             HHh-----hhHHHHHhhCcC---CCeEEEEecCCCc
Confidence            122     233445555666   8999998887776

>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues

Probab=95.84  E-value=0.026  Score=45.41  Aligned_cols=87  Identities=20%  Similarity=0.270  Sum_probs=62.8

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhccc----C----CCCeEEEeCCCCC-CC----C--C----
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES----D----LVNLKYVGGDMFK-AI----S--P----  173 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~----~----~~ri~~~~~d~~~-~~----~--~----  173 (259)
                      ++...||-+|||-=.....+....++++++-+|+|++++.-++    .    ..+.+++..|+.+ .+    .  +    
T Consensus        77 ~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~  156 (183)
T PF04072_consen   77 PGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPD  156 (183)
T ss_dssp             TTESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TT
T ss_pred             CCCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCC
Confidence            4455899999999999999999888999999999999976555    1    2346789999996 21    1  1    


Q ss_pred             -ccEEeehhhhccCChHHHHHHHHHHH
Q 041250          174 -AYAVLLKWILLDWNDEECVKILKKCK  199 (259)
Q Consensus       174 -~D~~~~~~vlh~~~d~~~~~il~~~~  199 (259)
                       .-++++-.++.+++.+++..+|+.++
T Consensus       157 ~ptl~i~Egvl~Yl~~~~~~~ll~~ia  183 (183)
T PF04072_consen  157 RPTLFIAEGVLMYLSPEQVDALLRAIA  183 (183)
T ss_dssp             SEEEEEEESSGGGS-HHHHHHHHHHH-
T ss_pred             CCeEEEEcchhhcCCHHHHHHHHHHhC
Confidence             34677778999999999999998874

It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=95.83  E-value=0.055  Score=43.56  Aligned_cols=100  Identities=14%  Similarity=0.082  Sum_probs=69.2

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC--CC-C---CccEEeehh
Q 041250          115 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK--AI-S---PAYAVLLKW  181 (259)
Q Consensus       115 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~--~~-~---~~D~~~~~~  181 (259)
                      ..++||+=+|+|.++.+.+.+. ..+++.+|. ..+....++      ...+++++..|...  +. +   .||+|++--
T Consensus        44 g~~~LDlFAGSGaLGlEAlSRG-A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDP  122 (187)
T COG0742          44 GARVLDLFAGSGALGLEALSRG-AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDP  122 (187)
T ss_pred             CCEEEEecCCccHhHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCC
Confidence            5799999999999999999985 337899998 666665555      34889999998874  11 1   399999998


Q ss_pred             hhcc-CChHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250          182 ILLD-WNDEECVKILKKCKEAITRDGKKRKVIIKDMIKE  219 (259)
Q Consensus       182 vlh~-~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~  219 (259)
                      -++. .-+.+..-++-.-...|+|    +.++++|.-..
T Consensus       123 Py~~~l~~~~~~~~~~~~~~~L~~----~~~iv~E~~~~  157 (187)
T COG0742         123 PYAKGLLDKELALLLLEENGWLKP----GALIVVEHDKD  157 (187)
T ss_pred             CCccchhhHHHHHHHHHhcCCcCC----CcEEEEEeCCC
Confidence            7772 1221212222223456898    55677777544

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=95.83  E-value=0.03  Score=48.33  Aligned_cols=99  Identities=15%  Similarity=0.186  Sum_probs=70.1

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-------CCCCeEEEeCCCCCC------CCCccEEee
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-------DLVNLKYVGGDMFKA------ISPAYAVLL  179 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~ri~~~~~d~~~~------~~~~D~~~~  179 (259)
                      ...+|||+=|=+|.++...+.. ...+++.+|. ..+++.+++       ..++++|+..|.++.      ...||+|++
T Consensus       123 ~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl  201 (286)
T PF10672_consen  123 KGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL  201 (286)
T ss_dssp             TTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred             CCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence            3579999999999999987764 3447999999 788888877       347999999999972      125999998


Q ss_pred             hhh-hc--cCC-hHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          180 KWI-LL--DWN-DEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       180 ~~v-lh--~~~-d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      --- +-  .+. ...-.++++.+.+.++|   ||.|+.+-.
T Consensus       202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~---gG~l~~~sc  239 (286)
T PF10672_consen  202 DPPSFAKSKFDLERDYKKLLRRAMKLLKP---GGLLLTCSC  239 (286)
T ss_dssp             --SSEESSTCEHHHHHHHHHHHHHHTEEE---EEEEEEEE-
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHhcCC---CCEEEEEcC
Confidence            631 11  121 12235789999999999   888877665

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation

Probab=95.82  E-value=0.0029  Score=44.63  Aligned_cols=58  Identities=16%  Similarity=0.205  Sum_probs=45.7

Q ss_pred             cCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhh
Q 041250            9 LGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNAS   66 (259)
Q Consensus         9 l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~   66 (259)
                      +.|++.|...+++.|+.|||+.+|++...+.+.+..+...+++..+..++.|.+++..
T Consensus         8 ~~Il~~l~~~~~~~t~~~ia~~l~i~~~tv~r~l~~L~~~g~l~~~~~~~~y~l~~~~   65 (91)
T smart00346        8 LAVLRALAEEPGGLTLAELAERLGLSKSTAHRLLNTLQELGYVEQDGQNGRYRLGPKV   65 (91)
T ss_pred             HHHHHHHHhCCCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCeeecCCCCceeecHHH
Confidence            5678888764368999999999999999999999988777665323346789988753

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=95.73  E-value=0.067  Score=43.77  Aligned_cols=101  Identities=13%  Similarity=0.124  Sum_probs=54.3

Q ss_pred             CCCeEEEecCCchHHHHH---HHHHC-CCCeEEEeec--hHHHhhccc---CCCCeEEEeCCCCCC---CC--------C
Q 041250          114 GLNSLVDVGGGTGTAAKA---IAKAF-PKLECTCFDL--PHVVNGLES---DLVNLKYVGGDMFKA---IS--------P  173 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~---l~~~~-p~~~~~~~D~--~~~~~~a~~---~~~ri~~~~~d~~~~---~~--------~  173 (259)
                      ++.+|+++|--.|.-+.-   +++.. ++.+++++|+  +..-..+.+   ..+||+++.||-.++   .+        .
T Consensus        32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~  111 (206)
T PF04989_consen   32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH  111 (206)
T ss_dssp             --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred             CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence            478999999766655554   44555 8889999998  333333332   569999999998763   11        1


Q ss_pred             ccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecC
Q 041250          174 AYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKEN  220 (259)
Q Consensus       174 ~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~  220 (259)
                      ..+|+. ..=|.+.  .+.+.|+.....+++   |++++|-|+...+
T Consensus       112 ~vlVil-Ds~H~~~--hvl~eL~~y~plv~~---G~Y~IVeDt~~~~  152 (206)
T PF04989_consen  112 PVLVIL-DSSHTHE--HVLAELEAYAPLVSP---GSYLIVEDTIIED  152 (206)
T ss_dssp             SEEEEE-SS----S--SHHHHHHHHHHT--T---T-EEEETSHHHHH
T ss_pred             ceEEEE-CCCccHH--HHHHHHHHhCccCCC---CCEEEEEeccccc
Confidence            223332 2333333  366788888899999   8988888876543

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=95.66  E-value=0.014  Score=52.16  Aligned_cols=102  Identities=19%  Similarity=0.131  Sum_probs=76.3

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-CCC--CccEEeehhhhc
Q 041250          115 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AIS--PAYAVLLKWILL  184 (259)
Q Consensus       115 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~--~~D~~~~~~vlh  184 (259)
                      ...++|+|||.|.....+..- ...+.+++|. +.-+..+..      ...+..++.+|+.+ |.+  .||.+.+..+.-
T Consensus       111 ~~~~~~~~~g~~~~~~~i~~f-~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~  189 (364)
T KOG1269|consen  111 GSKVLDVGTGVGGPSRYIAVF-KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVC  189 (364)
T ss_pred             cccccccCcCcCchhHHHHHh-ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeecc
Confidence            347899999999999888764 3567888887 433333333      55667778899988 666  499888877666


Q ss_pred             cCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCC
Q 041250          185 DWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRK  222 (259)
Q Consensus       185 ~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~  222 (259)
                      +.++-  ..++++++++++|   ||..++-|.+.-..-
T Consensus       190 ~~~~~--~~~y~Ei~rv~kp---GG~~i~~e~i~~~~~  222 (364)
T KOG1269|consen  190 HAPDL--EKVYAEIYRVLKP---GGLFIVKEWIKTAKL  222 (364)
T ss_pred             cCCcH--HHHHHHHhcccCC---CceEEeHHHHHhhhc
Confidence            67764  4799999999999   898888887765543

>KOG2730 consensus Methylase [General function prediction only]

Probab=95.62  E-value=0.0083  Score=49.20  Aligned_cols=54  Identities=19%  Similarity=0.268  Sum_probs=47.0

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK  169 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~  169 (259)
                      +...|+|.-||-|...+.++.++|.  ++.+|+ |.-|..|+.      ..+||+|++||+++
T Consensus        94 ~~~~iidaf~g~gGntiqfa~~~~~--VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld  154 (263)
T KOG2730|consen   94 NAEVIVDAFCGVGGNTIQFALQGPY--VIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLD  154 (263)
T ss_pred             CcchhhhhhhcCCchHHHHHHhCCe--EEEEeccHHHHHHHhccceeecCCceeEEEechHHH
Confidence            5678999999999999999999874  778888 888888876      56799999999987

>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=95.57  E-value=0.046  Score=48.66  Aligned_cols=112  Identities=12%  Similarity=0.228  Sum_probs=77.8

Q ss_pred             HHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec---hHHHhhccc------------CCCCeEEEeCCCC
Q 041250          104 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL---PHVVNGLES------------DLVNLKYVGGDMF  168 (259)
Q Consensus       104 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~---~~~~~~a~~------------~~~ri~~~~~d~~  168 (259)
                      +.+.+.  +.......|+|+|-|.....++....--+-+|+.+   |.-+.....            ....++.+.++|.
T Consensus       184 i~dEl~--~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~  261 (419)
T KOG3924|consen  184 IVDELK--LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFL  261 (419)
T ss_pred             HHHHhc--cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccC
Confidence            344444  56678899999999999988877654444555554   433332221            3567888999998


Q ss_pred             CC------CCCccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCC
Q 041250          169 KA------ISPAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKK  223 (259)
Q Consensus       169 ~~------~~~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~  223 (259)
                      .+      .+.++++++.++.  ++++...++= ++..-+++   |.+|+-.+...+-++.
T Consensus       262 ~~~~v~eI~~eatvi~vNN~~--Fdp~L~lr~~-eil~~ck~---gtrIiS~~~L~~r~rs  316 (419)
T KOG3924|consen  262 DPKRVTEIQTEATVIFVNNVA--FDPELKLRSK-EILQKCKD---GTRIISSKPLVPRPRS  316 (419)
T ss_pred             CHHHHHHHhhcceEEEEeccc--CCHHHHHhhH-HHHhhCCC---cceEeccccccccccc
Confidence            84      2369999999988  5555544443 77778898   8999999988885443

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=95.55  E-value=0.003  Score=51.26  Aligned_cols=99  Identities=17%  Similarity=0.202  Sum_probs=60.2

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCCCCCCccEEeehhhhccCChHHH
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDEEC  191 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~~~~D~~~~~~vlh~~~d~~~  191 (259)
                      +.+.++||+|.|.|..+..++-.+.+  +...++ ..|..+.++..-||-- ..+..+..-++|+|.+-++|....+  .
T Consensus       111 ~~~~~lLDlGAGdGeit~~m~p~fee--vyATElS~tMr~rL~kk~ynVl~-~~ew~~t~~k~dli~clNlLDRc~~--p  185 (288)
T KOG3987|consen  111 QEPVTLLDLGAGDGEITLRMAPTFEE--VYATELSWTMRDRLKKKNYNVLT-EIEWLQTDVKLDLILCLNLLDRCFD--P  185 (288)
T ss_pred             CCCeeEEeccCCCcchhhhhcchHHH--HHHHHhhHHHHHHHhhcCCceee-ehhhhhcCceeehHHHHHHHHhhcC--h
Confidence            34579999999999999887665543  223344 3444444431111110 0111111115999999999876554  3


Q ss_pred             HHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250          192 VKILKKCKEAITRDGKKRKVIIKDMIKE  219 (259)
Q Consensus       192 ~~il~~~~~~L~p~~~gg~lli~e~~~~  219 (259)
                      -++|+.++.++.|.  .|++++. .++|
T Consensus       186 ~kLL~Di~~vl~ps--ngrviva-LVLP  210 (288)
T KOG3987|consen  186 FKLLEDIHLVLAPS--NGRVIVA-LVLP  210 (288)
T ss_pred             HHHHHHHHHHhccC--CCcEEEE-EEec
Confidence            58999999999994  6776543 3444

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=95.18  E-value=0.082  Score=46.68  Aligned_cols=101  Identities=16%  Similarity=0.152  Sum_probs=79.8

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC--CC-CCccEEeehhh
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK--AI-SPAYAVLLKWI  182 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~--~~-~~~D~~~~~~v  182 (259)
                      ..+.+|||.=+|-|.+++.+++...- +++.+|+ |.++.-.++      ..++++.+.||..+  +. +.+|-|++.+.
T Consensus       187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~-~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p  265 (341)
T COG2520         187 KEGETVLDMFAGVGPFSIPIAKKGRP-KVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP  265 (341)
T ss_pred             cCCCEEEEccCCcccchhhhhhcCCc-eEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC
Confidence            33789999999999999999987532 3999999 988887766      45679999999998  33 46999998864


Q ss_pred             hccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCC
Q 041250          183 LLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKK  223 (259)
Q Consensus       183 lh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~  223 (259)
                      -      .+.+.+-.+.+.+++   ||.+...+.+..+...
T Consensus       266 ~------~a~~fl~~A~~~~k~---~g~iHyy~~~~e~~~~  297 (341)
T COG2520         266 K------SAHEFLPLALELLKD---GGIIHYYEFVPEDDIE  297 (341)
T ss_pred             C------cchhhHHHHHHHhhc---CcEEEEEeccchhhcc
Confidence            3      134567777888888   8999999888776653

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.10  E-value=0.014  Score=45.68  Aligned_cols=96  Identities=18%  Similarity=0.150  Sum_probs=67.0

Q ss_pred             CCeEEEecCCchHHHH-HHHHHCCCCeEEEeec-hHHHhhccc--------CCCCeEEEeCCCCCC-----CCCccEEee
Q 041250          115 LNSLVDVGGGTGTAAK-AIAKAFPKLECTCFDL-PHVVNGLES--------DLVNLKYVGGDMFKA-----ISPAYAVLL  179 (259)
Q Consensus       115 ~~~vlDvGgG~G~~~~-~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~~ri~~~~~d~~~~-----~~~~D~~~~  179 (259)
                      ..+|+++|||.-.++- -++...|.-.+.+.|- ...+...++        ..+++..+..+....     +..||+|+.
T Consensus        30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla  109 (201)
T KOG3201|consen   30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA  109 (201)
T ss_pred             HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence            3689999999655554 4566778888999997 555555444        345665555555441     225999999


Q ss_pred             hhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250          180 KWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKD  215 (259)
Q Consensus       180 ~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e  215 (259)
                      +..+  +-++....+.+.|...|+|   .|+-++.-
T Consensus       110 ADCl--FfdE~h~sLvdtIk~lL~p---~g~Al~fs  140 (201)
T KOG3201|consen  110 ADCL--FFDEHHESLVDTIKSLLRP---SGRALLFS  140 (201)
T ss_pred             ccch--hHHHHHHHHHHHHHHHhCc---ccceeEec
Confidence            9887  4456667899999999999   67755544

>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities

Probab=95.10  E-value=0.0015  Score=41.18  Aligned_cols=43  Identities=23%  Similarity=0.289  Sum_probs=35.3

Q ss_pred             cCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCC
Q 041250            9 LGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSG   51 (259)
Q Consensus         9 l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~   51 (259)
                      +.|++.|...+++.|+.|||+++|++...+.|+|..+...+++
T Consensus         6 l~iL~~l~~~~~~~t~~eia~~~gl~~stv~r~L~tL~~~g~v   48 (52)
T PF09339_consen    6 LRILEALAESGGPLTLSEIARALGLPKSTVHRLLQTLVEEGYV   48 (52)
T ss_dssp             HHHHHCHHCTBSCEEHHHHHHHHTS-HHHHHHHHHHHHHTTSE
T ss_pred             HHHHHHHHcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCcCe
Confidence            4578888886677899999999999999999999988766543

One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=95.08  E-value=0.088  Score=45.41  Aligned_cols=67  Identities=16%  Similarity=0.164  Sum_probs=56.8

Q ss_pred             hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCe-EEEeec-hHHHhhccc----CCCCeEEEeCCCCC
Q 041250          101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLE-CTCFDL-PHVVNGLES----DLVNLKYVGGDMFK  169 (259)
Q Consensus       101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~  169 (259)
                      ....++.+.  .......||.-=|.|.++.++++++|... .+++|. |.+++.|++    ..+|+.++.++|.+
T Consensus        12 l~E~i~~L~--~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~   84 (314)
T COG0275          12 LNEVVELLA--PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFAN   84 (314)
T ss_pred             HHHHHHhcc--cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHH
Confidence            455666666  66678999999999999999999998775 999999 999999988    36799999988764

>COG1414 IclR Transcriptional regulator [Transcription]

Probab=95.03  E-value=0.0071  Score=51.15  Aligned_cols=58  Identities=19%  Similarity=0.221  Sum_probs=46.3

Q ss_pred             cCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhh
Q 041250            9 LGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNAS   66 (259)
Q Consensus         9 l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~   66 (259)
                      +.|+++|...+.++++.|||+++|+++..+.|+|..|...+++..+.++++|++++..
T Consensus         7 l~iL~~l~~~~~~l~l~ela~~~glpksT~~RlL~tL~~~G~v~~d~~~g~Y~Lg~~~   64 (246)
T COG1414           7 LAILDLLAEGPGGLSLAELAERLGLPKSTVHRLLQTLVELGYVEQDPEDGRYRLGPRL   64 (246)
T ss_pred             HHHHHHHHhCCCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEcCCCCcEeehHHH
Confidence            4578888873344679999999999999999999999888876434456789999864

>TIGR02431 pcaR_pcaU beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family

Probab=94.88  E-value=0.0098  Score=50.28  Aligned_cols=57  Identities=12%  Similarity=0.149  Sum_probs=47.2

Q ss_pred             cCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhhh
Q 041250            9 LGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASK   67 (259)
Q Consensus         9 l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~~   67 (259)
                      +.|++.+....++.|+.|||+.+|++...+.|+|..|...+++  +.++++|.+++..-
T Consensus        12 l~IL~~l~~~~~~~~l~eia~~lglpksT~~RlL~tL~~~G~l--~~~~~~Y~lG~~~~   68 (248)
T TIGR02431        12 LAVIEAFGAERPRLTLTDVAEATGLTRAAARRFLLTLVELGYV--TSDGRLFWLTPRVL   68 (248)
T ss_pred             HHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCE--EeCCCEEEecHHHH
Confidence            4677888764578999999999999999999999999888776  44568899988644

Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU.

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=94.84  E-value=0.079  Score=45.51  Aligned_cols=103  Identities=14%  Similarity=0.122  Sum_probs=73.6

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCC-eEEEeec-hHHHhhccc---------CCCCeEEEeCCCCC---CC--CCcc
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKL-ECTCFDL-PHVVNGLES---------DLVNLKYVGGDMFK---AI--SPAY  175 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~---------~~~ri~~~~~d~~~---~~--~~~D  175 (259)
                      .+++.+++=||||.|.+.++..+- +.+ .+..+|+ ..+++..++         ..++|..+.||-+.   ..  ..+|
T Consensus       119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d  197 (337)
T KOG1562|consen  119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD  197 (337)
T ss_pred             CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence            567899999999999999998876 666 4777888 666666665         56899999999876   23  3599


Q ss_pred             EEeehhhhccCChH--HHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 041250          176 AVLLKWILLDWNDE--ECVKILKKCKEAITRDGKKRKVIIKDMIK  218 (259)
Q Consensus       176 ~~~~~~vlh~~~d~--~~~~il~~~~~~L~p~~~gg~lli~e~~~  218 (259)
                      +++.-..=-..+..  -...+++-+.++|++   +|.+++..-..
T Consensus       198 Vii~dssdpvgpa~~lf~~~~~~~v~~aLk~---dgv~~~q~ec~  239 (337)
T KOG1562|consen  198 VIITDSSDPVGPACALFQKPYFGLVLDALKG---DGVVCTQGECM  239 (337)
T ss_pred             EEEEecCCccchHHHHHHHHHHHHHHHhhCC---CcEEEEeccee
Confidence            98865321112211  123567778899999   88887766443

>PRK11569 transcriptional repressor IclR; Provisional

Probab=94.81  E-value=0.011  Score=50.85  Aligned_cols=59  Identities=14%  Similarity=0.113  Sum_probs=48.0

Q ss_pred             cCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhhh
Q 041250            9 LGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASK   67 (259)
Q Consensus         9 l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~~   67 (259)
                      +.|++.|.+.+++.|+.|||+.+|++...+.|+|..|...+++..+.+.++|++.+..-
T Consensus        31 l~IL~~l~~~~~~~~lseia~~lglpksTv~RlL~tL~~~G~l~~~~~~~~Y~lG~~l~   89 (274)
T PRK11569         31 LKLLEWIAESNGSVALTELAQQAGLPNSTTHRLLTTMQQQGFVRQVGELGHWAIGAHAF   89 (274)
T ss_pred             HHHHHHHHhCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEcCCCCeEecCHHHH
Confidence            46778887655789999999999999999999999998887763334578999987643

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=94.77  E-value=0.028  Score=51.60  Aligned_cols=55  Identities=25%  Similarity=0.399  Sum_probs=46.1

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCC
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMF  168 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~  168 (259)
                      ++....++|+-||+|.++.++++..  .+++++++ |+.++-|+.     ...+++|++|-..
T Consensus       381 l~~~k~llDv~CGTG~iglala~~~--~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE  441 (534)
T KOG2187|consen  381 LPADKTLLDVCCGTGTIGLALARGV--KRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAE  441 (534)
T ss_pred             CCCCcEEEEEeecCCceehhhhccc--cceeeeecChhhcchhhhcchhcCccceeeeecchh
Confidence            5667899999999999999998874  57899998 888888876     6689999999333

>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases

Probab=94.69  E-value=0.0087  Score=40.03  Aligned_cols=59  Identities=12%  Similarity=0.124  Sum_probs=44.4

Q ss_pred             HHHcCcchhhhcCCC-CCCHHHHHHHcCCCccccccceeccccccCCCCCC-CCceeecCH
Q 041250            6 AFQLGIPDIINKHGK-PMTLNELVSALTINLSKTQCFFAQQKLVSSGNNND-EEQGYVLTN   64 (259)
Q Consensus         6 a~~l~lf~~L~~~~~-~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~-~~~~y~~t~   64 (259)
                      ..+-.|++.|...++ ++|+.|||+++|++...+.+.|..|..-+++..+. .++.|.++.
T Consensus         6 ~~~~~IL~~L~~~g~~~~ta~eLa~~lgl~~~~v~r~L~~L~~~G~V~~~~~~~~~W~i~~   66 (68)
T smart00550        6 SLEEKILEFLENSGDETSTALQLAKNLGLPKKEVNRVLYSLEKKGKVCKQGGTPPLWKLTD   66 (68)
T ss_pred             HHHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCceEeec
Confidence            456678889988644 29999999999999999999988877666543222 447787764

Helix-turn-helix-containing domain. Also known as Zab.

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=94.66  E-value=0.52  Score=39.03  Aligned_cols=104  Identities=10%  Similarity=0.104  Sum_probs=72.5

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHH-CCCCeEEEeec-h----HHHhhcccCCCCeEEEeCCCCCCCC------CccEEee
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKA-FPKLECTCFDL-P----HVVNGLESDLVNLKYVGGDMFKAIS------PAYAVLL  179 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~D~-~----~~~~~a~~~~~ri~~~~~d~~~~~~------~~D~~~~  179 (259)
                      +....+||-+|..+|+....+..- .|+..+.+++. |    +.+..|+ ...||--+-.|...|..      ..|+++.
T Consensus        71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~-~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~  149 (229)
T PF01269_consen   71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAK-KRPNIIPILEDARHPEKYRMLVEMVDVIFQ  149 (229)
T ss_dssp             --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHH-HSTTEEEEES-TTSGGGGTTTS--EEEEEE
T ss_pred             CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhc-cCCceeeeeccCCChHHhhcccccccEEEe
Confidence            677889999999999999999995 45778888887 4    4445555 67788888899988532      4787665


Q ss_pred             hhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCC
Q 041250          180 KWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKK  223 (259)
Q Consensus       180 ~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~  223 (259)
                      - +-   ..+++.-++.|+..-|++   ||.++|.=-...-+.+
T Consensus       150 D-Va---Qp~Qa~I~~~Na~~fLk~---gG~~~i~iKa~siD~t  186 (229)
T PF01269_consen  150 D-VA---QPDQARIAALNARHFLKP---GGHLIISIKARSIDST  186 (229)
T ss_dssp             E--S---STTHHHHHHHHHHHHEEE---EEEEEEEEEHHHH-SS
T ss_pred             c-CC---ChHHHHHHHHHHHhhccC---CcEEEEEEecCcccCc
Confidence            4 22   235567788899899999   8988877554443443

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=94.65  E-value=0.21  Score=42.15  Aligned_cols=100  Identities=15%  Similarity=0.079  Sum_probs=62.6

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhccc-----------CCCCeEEEeCCCCCC------CCC-cc
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES-----------DLVNLKYVGGDMFKA------ISP-AY  175 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-----------~~~ri~~~~~d~~~~------~~~-~D  175 (259)
                      ...+||++|+|+|..++..+. ....+++.-|.|.++...+.           .+..+....-+...+      .|. +|
T Consensus        86 ~~~~vlELGsGtglvG~~aa~-~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D  164 (248)
T KOG2793|consen   86 KYINVLELGSGTGLVGILAAL-LLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD  164 (248)
T ss_pred             cceeEEEecCCccHHHHHHHH-HhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence            356899999999955555544 45678999999766654432           334666666555542      223 89


Q ss_pred             EEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecC
Q 041250          176 AVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKEN  220 (259)
Q Consensus       176 ~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~  220 (259)
                      +++.+.+++.-..  -..+++-++..|..   ++.++ ..+-+..
T Consensus       165 lilasDvvy~~~~--~e~Lv~tla~ll~~---~~~i~-l~~~lr~  203 (248)
T KOG2793|consen  165 LILASDVVYEEES--FEGLVKTLAFLLAK---DGTIF-LAYPLRR  203 (248)
T ss_pred             EEEEeeeeecCCc--chhHHHHHHHHHhc---CCeEE-EEEeccc
Confidence            9999988865432  22455555555776   66444 4443333

>PRK10163 DNA-binding transcriptional repressor AllR; Provisional

Probab=94.61  E-value=0.012  Score=50.39  Aligned_cols=59  Identities=12%  Similarity=0.120  Sum_probs=47.9

Q ss_pred             cCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhhh
Q 041250            9 LGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASK   67 (259)
Q Consensus         9 l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~~   67 (259)
                      +.|++.|...+++.|+.|||+.+|++...+.|+|..|...+++..+...+.|.+++..-
T Consensus        28 l~IL~~~~~~~~~~tl~eIa~~lglpkStv~RlL~tL~~~G~l~~~~~~~~Y~lG~~l~   86 (271)
T PRK10163         28 IAILQYLEKSGGSSSVSDISLNLDLPLSTTFRLLKVLQAADFVYQDSQLGWWHIGLGVF   86 (271)
T ss_pred             HHHHHHHHhCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEcCCCCeEEecHHHH
Confidence            56788887655679999999999999999999999998887763344678899987543

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=94.35  E-value=0.066  Score=48.99  Aligned_cols=85  Identities=18%  Similarity=0.281  Sum_probs=61.9

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC--C-CC---CccEEee
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK--A-IS---PAYAVLL  179 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~--~-~~---~~D~~~~  179 (259)
                      ..+..+++|+=||.|.++..++++  ..+++++++ +++++.|++     ..++++|+.++..+  + +.   .+|.|++
T Consensus       291 ~~~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~Vvv  368 (432)
T COG2265         291 LAGGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVV  368 (432)
T ss_pred             hcCCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEE
Confidence            456689999999999999999965  457999998 888888876     55779999999887  2 21   4788877


Q ss_pred             hhhhccCChHHHH-HHHHHHHHhccc
Q 041250          180 KWILLDWNDEECV-KILKKCKEAITR  204 (259)
Q Consensus       180 ~~vlh~~~d~~~~-~il~~~~~~L~p  204 (259)
                      -     =|..-+. .+++.+.+ ++|
T Consensus       369 D-----PPR~G~~~~~lk~l~~-~~p  388 (432)
T COG2265         369 D-----PPRAGADREVLKQLAK-LKP  388 (432)
T ss_pred             C-----CCCCCCCHHHHHHHHh-cCC
Confidence            4     3333233 45555544 355

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=94.28  E-value=0.19  Score=43.65  Aligned_cols=75  Identities=13%  Similarity=0.130  Sum_probs=43.3

Q ss_pred             CCCeEEEecCCchHH-HHHHHHHCCCCeEEEeec-hHHHhhccc-------CCCCeEEEeC----CCCCCC--C--CccE
Q 041250          114 GLNSLVDVGGGTGTA-AKAIAKAFPKLECTCFDL-PHVVNGLES-------DLVNLKYVGG----DMFKAI--S--PAYA  176 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~-~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~ri~~~~~----d~~~~~--~--~~D~  176 (259)
                      ...++||||+|.-.. .+.-++.| +.++++.|+ +..++.|++       +.++|+++..    +++...  +  .||+
T Consensus       102 ~~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~df  180 (299)
T PF05971_consen  102 EKVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDF  180 (299)
T ss_dssp             ---EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEE
T ss_pred             cceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeE
Confidence            357899999998854 44445554 899999999 888888876       5789998754    455522  2  3999


Q ss_pred             EeehhhhccCChH
Q 041250          177 VLLKWILLDWNDE  189 (259)
Q Consensus       177 ~~~~~vlh~~~d~  189 (259)
                      .++.--+|.-.++
T Consensus       181 tmCNPPFy~s~~e  193 (299)
T PF05971_consen  181 TMCNPPFYSSQEE  193 (299)
T ss_dssp             EEE-----SS---
T ss_pred             EecCCccccChhh
Confidence            9998888876554

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=94.23  E-value=0.042  Score=48.99  Aligned_cols=49  Identities=20%  Similarity=0.365  Sum_probs=38.4

Q ss_pred             eEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCC
Q 041250          117 SLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDM  167 (259)
Q Consensus       117 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~  167 (259)
                      +|+|+=||.|.++..+++..  -+++++|. +++++.|++     ..++++|+.++.
T Consensus       199 ~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~  253 (352)
T PF05958_consen  199 DVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDA  253 (352)
T ss_dssp             EEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--S
T ss_pred             cEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeec
Confidence            89999999999999999885  37999998 888888876     568899987654

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=94.08  E-value=0.65  Score=38.93  Aligned_cols=93  Identities=12%  Similarity=0.060  Sum_probs=53.6

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcc----cCCCCeEEEeCCCCCCCC-----CccEEeehhhhc
Q 041250          115 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLE----SDLVNLKYVGGDMFKAIS-----PAYAVLLKWILL  184 (259)
Q Consensus       115 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~----~~~~ri~~~~~d~~~~~~-----~~D~~~~~~vlh  184 (259)
                      .++||=||= .=..+++++...+..+++++|+ ...++..+    +..-.|+.+.+|+..++|     +||+++.--.  
T Consensus        45 gk~il~lGD-DDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPP--  121 (243)
T PF01861_consen   45 GKRILFLGD-DDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPP--  121 (243)
T ss_dssp             T-EEEEES--TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE-----
T ss_pred             CCEEEEEcC-CcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCC--
Confidence            578999994 4456667777777779999999 55555443    334449999999999876     3999887642  


Q ss_pred             cCChHHHHHHHHHHHHhcccCCCCcEEEE
Q 041250          185 DWNDEECVKILKKCKEAITRDGKKRKVII  213 (259)
Q Consensus       185 ~~~d~~~~~il~~~~~~L~p~~~gg~lli  213 (259)
                       ++.+-..-.+.+..++|+.  +|+..++
T Consensus       122 -yT~~G~~LFlsRgi~~Lk~--~g~~gy~  147 (243)
T PF01861_consen  122 -YTPEGLKLFLSRGIEALKG--EGCAGYF  147 (243)
T ss_dssp             -SSHHHHHHHHHHHHHTB-S--TT-EEEE
T ss_pred             -CCHHHHHHHHHHHHHHhCC--CCceEEE
Confidence             4456677789999999997  2544433

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.01  E-value=0.06  Score=41.87  Aligned_cols=42  Identities=19%  Similarity=0.185  Sum_probs=37.9

Q ss_pred             CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250          173 PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI  217 (259)
Q Consensus       173 ~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~  217 (259)
                      ++|+|+..|++-++.-++-...++.+++.|+|   ||+|-|.-+-
T Consensus        47 s~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp---~G~LriAvPd   88 (185)
T COG4627          47 SVDAIYAEHVLEHLTYDEGTSALKECHRFLRP---GGKLRIAVPD   88 (185)
T ss_pred             chHHHHHHHHHHHHhHHHHHHHHHHHHHHhCc---CcEEEEEcCC
Confidence            59999999999999999999999999999999   9998876543

>PRK09834 DNA-binding transcriptional activator MhpR; Provisional

Probab=93.95  E-value=0.018  Score=49.23  Aligned_cols=61  Identities=11%  Similarity=0.110  Sum_probs=48.2

Q ss_pred             cCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhhhhh
Q 041250            9 LGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASKLL   69 (259)
Q Consensus         9 l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~~~l   69 (259)
                      +.|++.|...+++.|+.|||+.+|++...+.|+|..|...+++..+.+++.|++++....|
T Consensus        14 l~iL~~l~~~~~~ls~~eia~~lgl~kstv~RlL~tL~~~g~v~~~~~~~~Y~Lg~~~~~l   74 (263)
T PRK09834         14 LMVLRALNRLDGGATVGLLAELTGLHRTTVRRLLETLQEEGYVRRSASDDSFRLTLKVRQL   74 (263)
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEecCCCcEEEcHHHHHH
Confidence            4577788764456999999999999999999999998887765323456789999876544

>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif

Probab=93.78  E-value=0.039  Score=34.90  Aligned_cols=38  Identities=34%  Similarity=0.451  Sum_probs=32.6

Q ss_pred             HHHHHHHcCcchhhhcCCCCCCHHHHHHHcCCCcccccccee
Q 041250            2 TLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFA   43 (259)
Q Consensus         2 aL~~a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~   43 (259)
                      +|.+|.+.|-||.=.    .+|..|||+.+|+++..+..-|+
T Consensus         8 ~L~~A~~~GYfd~PR----~~tl~elA~~lgis~st~~~~LR   45 (53)
T PF04967_consen    8 ILKAAYELGYFDVPR----RITLEELAEELGISKSTVSEHLR   45 (53)
T ss_pred             HHHHHHHcCCCCCCC----cCCHHHHHHHhCCCHHHHHHHHH
Confidence            689999999999754    59999999999999988876554

This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.

>PRK15090 DNA-binding transcriptional regulator KdgR; Provisional

Probab=93.78  E-value=0.022  Score=48.40  Aligned_cols=58  Identities=19%  Similarity=0.267  Sum_probs=46.5

Q ss_pred             cCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhhh
Q 041250            9 LGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASK   67 (259)
Q Consensus         9 l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~~   67 (259)
                      +.|++.|... ++.|+.|||+.+|++...+.|+|..|...+++..+.+.++|.+++..-
T Consensus        17 l~IL~~l~~~-~~l~l~eia~~lgl~kstv~Rll~tL~~~G~l~~~~~~~~Y~lG~~~~   74 (257)
T PRK15090         17 FGILQALGEE-REIGITELSQRVMMSKSTVYRFLQTMKTLGYVAQEGESEKYSLTLKLF   74 (257)
T ss_pred             HHHHHHhhcC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEcCCCCcEEecHHHH
Confidence            4577777764 689999999999999999999999988887653234568899997643

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=93.72  E-value=0.89  Score=38.00  Aligned_cols=100  Identities=8%  Similarity=0.036  Sum_probs=64.3

Q ss_pred             hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec--hHHHhhcccCCCCeEEEeC-CCCCC----CC-
Q 041250          101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL--PHVVNGLESDLVNLKYVGG-DMFKA----IS-  172 (259)
Q Consensus       101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a~~~~~ri~~~~~-d~~~~----~~-  172 (259)
                      ....++.++ ...+...+||||..||.++..++++. .-++.++|.  -+.-...+ ..+|+..++. |+..-    +. 
T Consensus        67 L~~ale~F~-l~~k~kv~LDiGsSTGGFTd~lLq~g-Ak~VyavDVG~~Ql~~kLR-~d~rV~~~E~tN~r~l~~~~~~~  143 (245)
T COG1189          67 LEKALEEFE-LDVKGKVVLDIGSSTGGFTDVLLQRG-AKHVYAVDVGYGQLHWKLR-NDPRVIVLERTNVRYLTPEDFTE  143 (245)
T ss_pred             HHHHHHhcC-cCCCCCEEEEecCCCccHHHHHHHcC-CcEEEEEEccCCccCHhHh-cCCcEEEEecCChhhCCHHHccc
Confidence            344566666 23567899999999999999999883 236888897  33333344 5667776665 55431    11 


Q ss_pred             CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEE
Q 041250          173 PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKV  211 (259)
Q Consensus       173 ~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~l  211 (259)
                      ..|++++--.+  .+   ...+|-.+...++|   ++.+
T Consensus       144 ~~d~~v~DvSF--IS---L~~iLp~l~~l~~~---~~~~  174 (245)
T COG1189         144 KPDLIVIDVSF--IS---LKLILPALLLLLKD---GGDL  174 (245)
T ss_pred             CCCeEEEEeeh--hh---HHHHHHHHHHhcCC---CceE
Confidence            35666654322  22   35688888888998   5544

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=93.67  E-value=0.49  Score=43.47  Aligned_cols=102  Identities=20%  Similarity=0.269  Sum_probs=75.5

Q ss_pred             eEEEecCCchHHHHHHHHH-CCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCC-CCC--CccEEeehhhhccC-
Q 041250          117 SLVDVGGGTGTAAKAIAKA-FPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-AIS--PAYAVLLKWILLDW-  186 (259)
Q Consensus       117 ~vlDvGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~~~--~~D~~~~~~vlh~~-  186 (259)
                      +++-+|||.-.+...+.+. ++  .++.+|. +.+++....    ..+-..+...|+.. .++  +||+++....++.. 
T Consensus        51 ~~l~lGCGNS~l~e~ly~~G~~--dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~  128 (482)
T KOG2352|consen   51 KILQLGCGNSELSEHLYKNGFE--DITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF  128 (482)
T ss_pred             eeEeecCCCCHHHHHHHhcCCC--CceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence            8999999999888887765 33  3677788 444444332    45677888899988 555  69999999999875 


Q ss_pred             ChHH-------HHHHHHHHHHhcccCCCCcEEEEEeee--ecCCCC
Q 041250          187 NDEE-------CVKILKKCKEAITRDGKKRKVIIKDMI--KENRKK  223 (259)
Q Consensus       187 ~d~~-------~~~il~~~~~~L~p~~~gg~lli~e~~--~~~~~~  223 (259)
                      .++.       +-..+.++.++++|   ||+.+.+-..  .+..+.
T Consensus       129 ~de~a~~~~~~v~~~~~eVsrvl~~---~gk~~svtl~~~vp~~r~  171 (482)
T KOG2352|consen  129 EDEDALLNTAHVSNMLDEVSRVLAP---GGKYISVTLVQVVPQGRK  171 (482)
T ss_pred             CCchhhhhhHHhhHHHhhHHHHhcc---CCEEEEEEeeeeccCCCC
Confidence            3332       23468999999999   9998888884  555544

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=93.56  E-value=0.18  Score=46.44  Aligned_cols=96  Identities=20%  Similarity=0.208  Sum_probs=66.3

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-h----HHHhhcccCCCCeEEEeCCCCCC---CC-CccEEeehhhh
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-P----HVVNGLESDLVNLKYVGGDMFKA---IS-PAYAVLLKWIL  183 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~----~~~~~a~~~~~ri~~~~~d~~~~---~~-~~D~~~~~~vl  183 (259)
                      .....|+|...|.|.++.+|.+. |   +.++.. |    ..+...-  ....--+-+|..++   .| .||++...+++
T Consensus       364 ~~iRNVMDMnAg~GGFAAAL~~~-~---VWVMNVVP~~~~ntL~vIy--dRGLIG~yhDWCE~fsTYPRTYDLlHA~~lf  437 (506)
T PF03141_consen  364 GRIRNVMDMNAGYGGFAAALIDD-P---VWVMNVVPVSGPNTLPVIY--DRGLIGVYHDWCEAFSTYPRTYDLLHADGLF  437 (506)
T ss_pred             cceeeeeeecccccHHHHHhccC-C---ceEEEecccCCCCcchhhh--hcccchhccchhhccCCCCcchhheehhhhh
Confidence            44578999999999999999754 2   444443 2    2222211  11222244677664   45 49999999999


Q ss_pred             ccCCh-HHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250          184 LDWND-EECVKILKKCKEAITRDGKKRKVIIKDMI  217 (259)
Q Consensus       184 h~~~d-~~~~~il~~~~~~L~p~~~gg~lli~e~~  217 (259)
                      ..+.+ -+...||-++=|.|+|   +|.++|-|.+
T Consensus       438 s~~~~rC~~~~illEmDRILRP---~G~~iiRD~~  469 (506)
T PF03141_consen  438 SLYKDRCEMEDILLEMDRILRP---GGWVIIRDTV  469 (506)
T ss_pred             hhhcccccHHHHHHHhHhhcCC---CceEEEeccH
Confidence            88764 3456799999999999   8998887753

; GO: 0008168 methyltransferase activity

>PRK10742 putative methyltransferase; Provisional

Probab=93.51  E-value=0.22  Score=42.01  Aligned_cols=111  Identities=17%  Similarity=0.207  Sum_probs=74.0

Q ss_pred             hHHHHHhcccccCCCC--eEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc--------------CCCCeEEE
Q 041250          101 TSVMIQKCKNVFEGLN--SLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES--------------DLVNLKYV  163 (259)
Q Consensus       101 ~~~~~~~~~~~~~~~~--~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------------~~~ri~~~  163 (259)
                      .+.+++...  +.+..  +|||+=+|.|..+..++.+  +++++.++. |.+....++              ...|++++
T Consensus        75 ~~~l~kAvg--lk~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~  150 (250)
T PRK10742         75 GEAVAKAVG--IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLI  150 (250)
T ss_pred             ccHHHHHhC--CCCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEE
Confidence            356777776  55555  8999999999999999998  778999998 433333222              12579999


Q ss_pred             eCCCCC---CCC-CccEEeehh----------------hhccC--ChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecC
Q 041250          164 GGDMFK---AIS-PAYAVLLKW----------------ILLDW--NDEECVKILKKCKEAITRDGKKRKVIIKDMIKEN  220 (259)
Q Consensus       164 ~~d~~~---~~~-~~D~~~~~~----------------vlh~~--~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~  220 (259)
                      .+|..+   ..+ .||+|++--                ++|.+  .|.+...+|+.+.++-+     -++++-.+...+
T Consensus       151 ~~da~~~L~~~~~~fDVVYlDPMfp~~~ksa~vkk~mr~~~~l~g~d~d~~~lL~~Al~~A~-----kRVVVKrp~~a~  224 (250)
T PRK10742        151 HASSLTALTDITPRPQVVYLDPMFPHKQKSALVKKEMRVFQSLVGPDLDADGLLEPARLLAT-----KRVVVKRPDYAP  224 (250)
T ss_pred             eCcHHHHHhhCCCCCcEEEECCCCCCCccccchhhhHHHHHHhcCCCCChHHHHHHHHHhcC-----ceEEEecCCCCC
Confidence            998876   233 489888643                23222  23334566776665543     577777765443

>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]

Probab=93.02  E-value=0.81  Score=39.72  Aligned_cols=109  Identities=17%  Similarity=0.238  Sum_probs=80.5

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHC--CCCeEEEeechHHHhhccc---------------------------CCCCeEE
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAF--PKLECTCFDLPHVVNGLES---------------------------DLVNLKY  162 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~--p~~~~~~~D~~~~~~~a~~---------------------------~~~ri~~  162 (259)
                      ..+...||.+|||.-.+...+...+  +.++++-+|.|+++..--.                           ..+|...
T Consensus        85 ~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~  164 (335)
T KOG2918|consen   85 TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYHL  164 (335)
T ss_pred             cCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccCceee
Confidence            4567789999999999999999987  8889999999877753111                           1345556


Q ss_pred             EeCCCCC--CC-----C-----C-ccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCC
Q 041250          163 VGGDMFK--AI-----S-----P-AYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKD  224 (259)
Q Consensus       163 ~~~d~~~--~~-----~-----~-~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~  224 (259)
                      +..|..+  ..     +     . +-+++.--+|-+.+++++..+++.+......    +.+++.|.+.+.++.+
T Consensus       165 ~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~~----a~fv~YEQi~~~D~Fg  235 (335)
T KOG2918|consen  165 IGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFEN----AHFVNYEQINPNDRFG  235 (335)
T ss_pred             eccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCCc----ccEEEEeccCCCChHH
Confidence            6666653  10     0     1 1233334577788999999999999999885    8999999999777554

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=92.94  E-value=1.7  Score=39.20  Aligned_cols=104  Identities=16%  Similarity=0.188  Sum_probs=64.6

Q ss_pred             CCCeEEEecCCchHHHHHH--------HHH-------CCCCeEEEeech----HHH-hhccc--------------CCCC
Q 041250          114 GLNSLVDVGGGTGTAAKAI--------AKA-------FPKLECTCFDLP----HVV-NGLES--------------DLVN  159 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l--------~~~-------~p~~~~~~~D~~----~~~-~~a~~--------------~~~r  159 (259)
                      +..+|+|+|||+|..+..+        .++       -|.+++..=|+|    ..+ .....              ...+
T Consensus        63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~  142 (386)
T PLN02668         63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR  142 (386)
T ss_pred             cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC
Confidence            4678999999999766443        222       356788888886    111 11110              0112


Q ss_pred             ---eEEEeCCCCC-CCC--CccEEeehhhhccCCh--H----------------------HH------------HHHHHH
Q 041250          160 ---LKYVGGDMFK-AIS--PAYAVLLKWILLDWND--E----------------------EC------------VKILKK  197 (259)
Q Consensus       160 ---i~~~~~d~~~-~~~--~~D~~~~~~vlh~~~d--~----------------------~~------------~~il~~  197 (259)
                         +.-++|.|+. -+|  ..++++.++.||-.+.  +                      .+            ..+|+.
T Consensus       143 ~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~  222 (386)
T PLN02668        143 SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRA  222 (386)
T ss_pred             ceEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHH
Confidence               3446689998 456  4899999999984441  1                      11            123333


Q ss_pred             HHHhcccCCCCcEEEEEeeeecC
Q 041250          198 CKEAITRDGKKRKVIIKDMIKEN  220 (259)
Q Consensus       198 ~~~~L~p~~~gg~lli~e~~~~~  220 (259)
                      =++-|.|   ||++++.-...+.
T Consensus       223 Ra~ELvp---GG~mvl~~~Gr~~  242 (386)
T PLN02668        223 RAQEMKR---GGAMFLVCLGRTS  242 (386)
T ss_pred             HHHHhcc---CcEEEEEEecCCC
Confidence            3456889   9999988877654

>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp

Probab=92.85  E-value=0.032  Score=38.74  Aligned_cols=48  Identities=21%  Similarity=0.275  Sum_probs=35.5

Q ss_pred             CCCCHHHHHHHcCCCccccccceeccccccCCCC-CCCCceeecCHhhh
Q 041250           20 KPMTLNELVSALTINLSKTQCFFAQQKLVSSGNN-NDEEQGYVLTNASK   67 (259)
Q Consensus        20 ~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~-~~~~~~y~~t~~~~   67 (259)
                      ++.|.+|||+.+++++..+++++..|.-.+++.. ...+|.|.++...+
T Consensus        24 ~~~s~~eiA~~~~i~~~~l~kil~~L~~~Gli~s~~G~~GGy~L~~~~~   72 (83)
T PF02082_consen   24 KPVSSKEIAERLGISPSYLRKILQKLKKAGLIESSRGRGGGYRLARPPE   72 (83)
T ss_dssp             C-BEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETSTTSEEEESS-CC
T ss_pred             CCCCHHHHHHHHCcCHHHHHHHHHHHhhCCeeEecCCCCCceeecCCHH
Confidence            4699999999999999999999998876665432 34568898876543

(strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=92.70  E-value=0.6  Score=41.27  Aligned_cols=94  Identities=17%  Similarity=0.107  Sum_probs=61.9

Q ss_pred             cCCCCeEEEecC-CchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEe--CCCCCCCCC-ccEEeehhhhccC
Q 041250          112 FEGLNSLVDVGG-GTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVG--GDMFKAISP-AYAVLLKWILLDW  186 (259)
Q Consensus       112 ~~~~~~vlDvGg-G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~--~d~~~~~~~-~D~~~~~~vlh~~  186 (259)
                      ..+..+|+=+|. |-|.+++.++++.- .+++++|. ++-.+.|++.....-...  .|..+..++ +|+++..-. .  
T Consensus       164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~--  239 (339)
T COG1064         164 VKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-P--  239 (339)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-h--
Confidence            455566555554 67889999999775 89999999 777888886332222221  233333332 888776643 1  


Q ss_pred             ChHHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 041250          187 NDEECVKILKKCKEAITRDGKKRKVIIKDMIK  218 (259)
Q Consensus       187 ~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~  218 (259)
                            .-+....+.|++   +|+++++-...
T Consensus       240 ------~~~~~~l~~l~~---~G~~v~vG~~~  262 (339)
T COG1064         240 ------ATLEPSLKALRR---GGTLVLVGLPG  262 (339)
T ss_pred             ------hhHHHHHHHHhc---CCEEEEECCCC
Confidence                  235666777898   99999988763

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=92.68  E-value=1.7  Score=38.84  Aligned_cols=106  Identities=13%  Similarity=0.165  Sum_probs=72.3

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCC--CeEEEeec-hHHHh----hccc-CCCCeEEEeCCCCC---CCC---CccEE
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPK--LECTCFDL-PHVVN----GLES-DLVNLKYVGGDMFK---AIS---PAYAV  177 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~--~~~~~~D~-~~~~~----~a~~-~~~ri~~~~~d~~~---~~~---~~D~~  177 (259)
                      .....+|||...+.|.=+..+++..++  ..++.+|. +.-+.    ..++ ...++..+..|...   ..+   .||.|
T Consensus       154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i  233 (355)
T COG0144         154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI  233 (355)
T ss_pred             CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence            456789999999999999999998765  55689998 43333    3333 45567777777653   222   28887


Q ss_pred             eehh------hh-------ccCChHH-------HHHHHHHHHHhcccCCCCcEEEEEeeeecC
Q 041250          178 LLKW------IL-------LDWNDEE-------CVKILKKCKEAITRDGKKRKVIIKDMIKEN  220 (259)
Q Consensus       178 ~~~~------vl-------h~~~d~~-------~~~il~~~~~~L~p~~~gg~lli~e~~~~~  220 (259)
                      ++--      ++       ..|..++       ..+||+.+.+.++|   ||.|+-....+..
T Consensus       234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~---GG~LVYSTCS~~~  293 (355)
T COG0144         234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKP---GGVLVYSTCSLTP  293 (355)
T ss_pred             EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEccCCch
Confidence            7632      33       3444332       25789999999999   8887666654443

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=92.38  E-value=0.98  Score=39.34  Aligned_cols=98  Identities=13%  Similarity=0.114  Sum_probs=64.3

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEeec-----h-HHHhhccc---------------------------------
Q 041250          115 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-----P-HVVNGLES---------------------------------  155 (259)
Q Consensus       115 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-----~-~~~~~a~~---------------------------------  155 (259)
                      ..+||-=|||.|.++..|+...+.+++-=+-.     + -++...+.                                 
T Consensus       151 ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~p  230 (369)
T KOG2798|consen  151 KIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIHP  230 (369)
T ss_pred             CceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccccc
Confidence            57899999999999999999888776542211     1 11111110                                 


Q ss_pred             -----CCCCeEEEeCCCCC--CCC----CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250          156 -----DLVNLKYVGGDMFK--AIS----PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI  217 (259)
Q Consensus       156 -----~~~ri~~~~~d~~~--~~~----~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~  217 (259)
                           ..+..+.-.|||.+  +.+    .+|+|+.++.+.  +.......|..|...|+|   ||..+=.-+.
T Consensus       231 ~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFID--Ta~NileYi~tI~~iLk~---GGvWiNlGPL  298 (369)
T KOG2798|consen  231 ASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFID--TAHNILEYIDTIYKILKP---GGVWINLGPL  298 (369)
T ss_pred             cccCCCCCCccccccceeEEecCcCCCCccceEEEEEEee--chHHHHHHHHHHHHhccC---CcEEEeccce
Confidence                 12344446699988  333    389999885442  234577899999999999   7765544443

>PRK10857 DNA-binding transcriptional regulator IscR; Provisional

Probab=92.18  E-value=0.076  Score=42.01  Aligned_cols=47  Identities=19%  Similarity=0.316  Sum_probs=38.4

Q ss_pred             CCCCHHHHHHHcCCCccccccceeccccccCCCC-CCCCceeecCHhh
Q 041250           20 KPMTLNELVSALTINLSKTQCFFAQQKLVSSGNN-NDEEQGYVLTNAS   66 (259)
Q Consensus        20 ~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~-~~~~~~y~~t~~~   66 (259)
                      ++.|+++||+.+++++..+.++|..|.-.+++.. ...+|.|.+....
T Consensus        24 ~~vs~~eIA~~~~ip~~~l~kIl~~L~~aGLv~s~rG~~GGy~Lar~p   71 (164)
T PRK10857         24 GPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRGPGGGYLLGKDA   71 (164)
T ss_pred             CcCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCCCCCCCeeccCCH
Confidence            6899999999999999999999999877766543 3456779987654

>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B

Probab=92.09  E-value=1  Score=34.78  Aligned_cols=92  Identities=15%  Similarity=0.187  Sum_probs=48.0

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEeec-----hHHHhhcccCCCCeEEEeCCCCCCCC-----CccEEeehhhhc
Q 041250          115 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-----PHVVNGLESDLVNLKYVGGDMFKAIS-----PAYAVLLKWILL  184 (259)
Q Consensus       115 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-----~~~~~~a~~~~~ri~~~~~d~~~~~~-----~~D~~~~~~vlh  184 (259)
                      ..-|+|+|=|.|..=..+.+.+|+-++.++|.     |+....      .-.++.||+.+..+     +..+.+...=+-
T Consensus        29 ~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~~P~------~~~~ilGdi~~tl~~~~~~g~~a~laHaD~G  102 (160)
T PF12692_consen   29 PGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSSTPP------EEDLILGDIRETLPALARFGAGAALAHADIG  102 (160)
T ss_dssp             -S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG---------GGGEEES-HHHHHHHHHHH-S-EEEEEE---
T ss_pred             CCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCCCCc------hHheeeccHHHHhHHHHhcCCceEEEEeecC
Confidence            36799999999999999999999999999996     333333      33677788877322     233444443333


Q ss_pred             cCChHHHHHHHHH----HHHhcccCCCCcEEEEEee
Q 041250          185 DWNDEECVKILKK----CKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       185 ~~~d~~~~~il~~----~~~~L~p~~~gg~lli~e~  216 (259)
                      .-..++.....+.    +..+|.|   || +++...
T Consensus       103 ~g~~~~d~a~a~~lspli~~~la~---gG-i~vS~~  134 (160)
T PF12692_consen  103 TGDKEKDDATAAWLSPLIAPVLAP---GG-IMVSGQ  134 (160)
T ss_dssp             -S-HHHHHHHHHHHHHHHGGGEEE---EE-EEEESS
T ss_pred             CCCcchhHHHHHhhhHHHHHHhcC---Cc-EEEeCC
Confidence            3333333333443    3457888   55 444443

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=92.09  E-value=3.9  Score=33.50  Aligned_cols=106  Identities=9%  Similarity=0.089  Sum_probs=76.8

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-h----HHHhhcccCCCCeEEEeCCCCCCCC------CccEEeeh
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-P----HVVNGLESDLVNLKYVGGDMFKAIS------PAYAVLLK  180 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~----~~~~~a~~~~~ri~~~~~d~~~~~~------~~D~~~~~  180 (259)
                      +.+..+||=+|..+|+....+..-.++..+.+++. |    +.++.++ ...|+--+-+|...|+.      ..|+++.-
T Consensus        74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~-~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~D  152 (231)
T COG1889          74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAE-KRPNIIPILEDARKPEKYRHLVEKVDVIYQD  152 (231)
T ss_pred             cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHH-hCCCceeeecccCCcHHhhhhcccccEEEEe
Confidence            78889999999999999999999888777778876 3    4445555 56778778889888643      47876543


Q ss_pred             hhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCc
Q 041250          181 WILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDY  225 (259)
Q Consensus       181 ~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~  225 (259)
                       +   -.++++.-+..|+..-|++   ||.+++.=-...-+.+.+
T Consensus       153 -V---AQp~Qa~I~~~Na~~FLk~---~G~~~i~iKArSIdvT~d  190 (231)
T COG1889         153 -V---AQPNQAEILADNAEFFLKK---GGYVVIAIKARSIDVTAD  190 (231)
T ss_pred             -c---CCchHHHHHHHHHHHhccc---CCeEEEEEEeecccccCC
Confidence             1   2235566677888889998   787766655555555543

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=91.99  E-value=0.14  Score=37.40  Aligned_cols=39  Identities=18%  Similarity=0.318  Sum_probs=30.3

Q ss_pred             ccEEeehh----hhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          174 AYAVLLKW----ILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       174 ~D~~~~~~----vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      ||+|++-.    |=-+|.|+-..++++++++.|+|    |.++|.|+
T Consensus         2 yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~p----GG~lilEp   44 (110)
T PF06859_consen    2 YDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRP----GGILILEP   44 (110)
T ss_dssp             EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEE----EEEEEEE-
T ss_pred             ccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCC----CCEEEEeC
Confidence            78877654    33368899999999999999999    55677776

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=91.89  E-value=0.28  Score=44.50  Aligned_cols=90  Identities=13%  Similarity=0.102  Sum_probs=63.9

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-C-CCC--ccEEeehh
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-A-ISP--AYAVLLKW  181 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~-~~~--~D~~~~~~  181 (259)
                      .+...+||||.|+|.++.-.+++.-+ +++.++. .+|.+.|++      ..++|+++.---.+ . .|.  +|+++---
T Consensus        65 ~gkv~vLdigtGTGLLSmMAvragaD-~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~  143 (636)
T KOG1501|consen   65 IGKVFVLDIGTGTGLLSMMAVRAGAD-SVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVRED  143 (636)
T ss_pred             CceEEEEEccCCccHHHHHHHHhcCC-eEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhh
Confidence            45678999999999999999998744 6888887 888888877      56888887654443 2 232  77766555


Q ss_pred             hhccCChHHHHHHHHHHHHhcc
Q 041250          182 ILLDWNDEECVKILKKCKEAIT  203 (259)
Q Consensus       182 vlh~~~d~~~~~il~~~~~~L~  203 (259)
                      +....--+-+..-++++.+.|.
T Consensus       144 fdtEligeGalps~qhAh~~L~  165 (636)
T KOG1501|consen  144 FDTELIGEGALPSLQHAHDMLL  165 (636)
T ss_pred             hhhhhhccccchhHHHHHHHhc
Confidence            5544444545566777777664

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=91.18  E-value=0.88  Score=39.32  Aligned_cols=105  Identities=15%  Similarity=0.141  Sum_probs=72.0

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCC----CC-CccEEee
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKA----IS-PAYAVLL  179 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~----~~-~~D~~~~  179 (259)
                      .....+|||..++.|.=+..+++..+ ..+++..|+ +.-+...++     ...++.....|....    .+ .||.|++
T Consensus        83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv  162 (283)
T PF01189_consen   83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV  162 (283)
T ss_dssp             TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred             ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence            45567899999999999999999876 668999998 544444333     567788887777662    22 3888876


Q ss_pred             hh------hhccCC-------hH-------HHHHHHHHHHHhc----ccCCCCcEEEEEeeeec
Q 041250          180 KW------ILLDWN-------DE-------ECVKILKKCKEAI----TRDGKKRKVIIKDMIKE  219 (259)
Q Consensus       180 ~~------vlh~~~-------d~-------~~~~il~~~~~~L----~p~~~gg~lli~e~~~~  219 (259)
                      --      ++..-+       .+       ...++|+++.+.+    +|   ||+++-....+.
T Consensus       163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~---gG~lvYsTCS~~  223 (283)
T PF01189_consen  163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKP---GGRLVYSTCSLS  223 (283)
T ss_dssp             ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEE---EEEEEEEESHHH
T ss_pred             CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccC---CCeEEEEeccHH
Confidence            32      222111       11       1257899999999    99   888766655443

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=90.80  E-value=1.2  Score=39.55  Aligned_cols=106  Identities=17%  Similarity=0.227  Sum_probs=60.7

Q ss_pred             cCCCCeEEEecCCchHHHHHHHH--------HC--------CCCeEEEeechH-----HHhhccc------CCCC--eEE
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAK--------AF--------PKLECTCFDLPH-----VVNGLES------DLVN--LKY  162 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~--------~~--------p~~~~~~~D~~~-----~~~~a~~------~~~r--i~~  162 (259)
                      .++.-+|+|+||.+|..+..+..        ++        |.++++.-|+|.     +......      ...+  +.-
T Consensus        14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g   93 (334)
T PF03492_consen   14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG   93 (334)
T ss_dssp             TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred             CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence            45567999999999999877633        22        345778889861     1111111      1223  344


Q ss_pred             EeCCCCCC-CC--CccEEeehhhhccCC-------h------------------HHH------------HHHHHHHHHhc
Q 041250          163 VGGDMFKA-IS--PAYAVLLKWILLDWN-------D------------------EEC------------VKILKKCKEAI  202 (259)
Q Consensus       163 ~~~d~~~~-~~--~~D~~~~~~vlh~~~-------d------------------~~~------------~~il~~~~~~L  202 (259)
                      +++.|+.. +|  ..|+++.++.||-.+       +                  +.+            ..+|+.=++=|
T Consensus        94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL  173 (334)
T PF03492_consen   94 VPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL  173 (334)
T ss_dssp             EES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred             cCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence            67999983 55  489999999998443       1                  121            23333334568


Q ss_pred             ccCCCCcEEEEEeeeecC
Q 041250          203 TRDGKKRKVIIKDMIKEN  220 (259)
Q Consensus       203 ~p~~~gg~lli~e~~~~~  220 (259)
                      +|   ||++++.-...++
T Consensus       174 v~---GG~mvl~~~gr~~  188 (334)
T PF03492_consen  174 VP---GGRMVLTFLGRDE  188 (334)
T ss_dssp             EE---EEEEEEEEEE-ST
T ss_pred             cc---CcEEEEEEeeccc
Confidence            89   9999998888777

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=90.79  E-value=0.62  Score=41.97  Aligned_cols=67  Identities=7%  Similarity=0.002  Sum_probs=56.0

Q ss_pred             hcccCCCCeEEEeCCCCC---CCC--CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCC
Q 041250          152 GLESDLVNLKYVGGDMFK---AIS--PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENR  221 (259)
Q Consensus       152 ~a~~~~~ri~~~~~d~~~---~~~--~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~  221 (259)
                      ..++..+||+++.+++.+   ..|  .+|.+++..++--+++++..+.++++.++++|   ||+++.-....+..
T Consensus       269 ~lr~~~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~p---gaRV~~Rsa~~~~~  340 (380)
T PF11899_consen  269 ALRARLDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARP---GARVLWRSAAVPPW  340 (380)
T ss_pred             HHhcCCCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCC---CCEEEEeeCCCCCC
Confidence            334456999999999887   243  59999999999888999999999999999999   99999888766544

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family

Probab=90.40  E-value=0.17  Score=33.08  Aligned_cols=43  Identities=12%  Similarity=0.101  Sum_probs=34.2

Q ss_pred             CCCCHHHHHHHcCCCccccccceeccccccCCCCCCC-CceeecCH
Q 041250           20 KPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDE-EQGYVLTN   64 (259)
Q Consensus        20 ~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~-~~~y~~t~   64 (259)
                      .+.|..|||+.+|+++..+.+.+..+..-+++  +.. .+.|.++|
T Consensus        24 ~~~s~~ela~~~g~s~~tv~r~l~~L~~~g~i--~~~~~~~~~l~~   67 (67)
T cd00092          24 LPLTRQEIADYLGLTRETVSRTLKELEEEGLI--SRRGRGKYRVNP   67 (67)
T ss_pred             CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCE--EecCCCeEEeCC
Confidence            68999999999999999999999887766554  323 36787764

>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein

Probab=90.40  E-value=0.085  Score=32.00  Aligned_cols=42  Identities=14%  Similarity=0.105  Sum_probs=32.8

Q ss_pred             CCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecC
Q 041250           20 KPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLT   63 (259)
Q Consensus        20 ~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t   63 (259)
                      -+.|..+||+.+|+++..+.+.++.+...+++  +...+.|.++
T Consensus         7 ~~~s~~~la~~l~~s~~tv~~~l~~L~~~g~l--~~~~~~~~i~   48 (48)
T smart00419        7 LPLTRQEIAELLGLTRETVSRTLKRLEKEGLI--SREGGRIVIL   48 (48)
T ss_pred             eccCHHHHHHHHCCCHHHHHHHHHHHHHCCCE--EEeCCEEEEC
Confidence            47899999999999999999999888776654  3334666553

>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A

Probab=90.32  E-value=0.044  Score=37.52  Aligned_cols=55  Identities=18%  Similarity=0.206  Sum_probs=40.3

Q ss_pred             CcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhhhh
Q 041250           10 GIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASKL   68 (259)
Q Consensus        10 ~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~~~   68 (259)
                      .|+..+..  ++.+..+|+..++++...+.+.|..|..-+++  +..++.|.+|+.+.-
T Consensus        10 ~IL~~l~~--~~~~~t~i~~~~~L~~~~~~~yL~~L~~~gLI--~~~~~~Y~lTekG~~   64 (77)
T PF14947_consen   10 DILKILSK--GGAKKTEIMYKANLNYSTLKKYLKELEEKGLI--KKKDGKYRLTEKGKE   64 (77)
T ss_dssp             HHHHHH-T--T-B-HHHHHTTST--HHHHHHHHHHHHHTTSE--EEETTEEEE-HHHHH
T ss_pred             HHHHHHHc--CCCCHHHHHHHhCcCHHHHHHHHHHHHHCcCe--eCCCCEEEECccHHH
Confidence            34556654  89999999999999999999999988777665  557899999999873

>COG1959 Predicted transcriptional regulator [Transcription]

Probab=90.22  E-value=0.1  Score=40.68  Aligned_cols=48  Identities=15%  Similarity=0.219  Sum_probs=39.5

Q ss_pred             CCCCHHHHHHHcCCCccccccceeccccccCCCC-CCCCceeecCHhhh
Q 041250           20 KPMTLNELVSALTINLSKTQCFFAQQKLVSSGNN-NDEEQGYVLTNASK   67 (259)
Q Consensus        20 ~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~-~~~~~~y~~t~~~~   67 (259)
                      ++.|+++||+..|+++..+.++|..|.-.+++.. ...+|.|.+...++
T Consensus        24 ~~~s~~~IA~~~~is~~~L~kil~~L~kaGlV~S~rG~~GGy~Lar~~~   72 (150)
T COG1959          24 GPVSSAEIAERQGISPSYLEKILSKLRKAGLVKSVRGKGGGYRLARPPE   72 (150)
T ss_pred             CcccHHHHHHHhCcCHHHHHHHHHHHHHcCCEEeecCCCCCccCCCChH
Confidence            3899999999999999999999999887776543 34578899987654

>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities

Probab=90.20  E-value=0.035  Score=34.07  Aligned_cols=41  Identities=20%  Similarity=0.348  Sum_probs=32.6

Q ss_pred             HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceecccccc
Q 041250            7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVS   49 (259)
Q Consensus         7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~   49 (259)
                      .++.|...|.+  ++.++.|||+.+|+++..+++-|+.+...+
T Consensus         3 ~R~~Il~~L~~--~~~~~~el~~~l~~s~~~vs~hL~~L~~~g   43 (47)
T PF01022_consen    3 TRLRILKLLSE--GPLTVSELAEELGLSQSTVSHHLKKLREAG   43 (47)
T ss_dssp             HHHHHHHHHTT--SSEEHHHHHHHHTS-HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHh--CCCchhhHHHhccccchHHHHHHHHHHHCc
Confidence            35677888887  899999999999999999998776665443

One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B ....

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=90.10  E-value=0.88  Score=40.38  Aligned_cols=63  Identities=24%  Similarity=0.433  Sum_probs=44.0

Q ss_pred             cCchHHHHHHHHHHhcchhhhHHHHHhcccc-cCCCCeEEEecCCchHHHHHHHHH----CC----CCeEEEeechHHH
Q 041250           81 DESKLNNFFNEAMASDARLATSVMIQKCKNV-FEGLNSLVDVGGGTGTAAKAIAKA----FP----KLECTCFDLPHVV  150 (259)
Q Consensus        81 ~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~-~~~~~~vlDvGgG~G~~~~~l~~~----~p----~~~~~~~D~~~~~  150 (259)
                      +.|+..+.|....+.+       ++..+... .+.+..+|++|.|+|.++..+++.    +|    .+++..++.++-+
T Consensus        50 TApels~lFGella~~-------~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L  121 (370)
T COG1565          50 TAPELSQLFGELLAEQ-------FLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPEL  121 (370)
T ss_pred             echhHHHHHHHHHHHH-------HHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHH
Confidence            5688888888876543       33333311 455678999999999999988764    45    5678888874333

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=89.97  E-value=1.3  Score=34.00  Aligned_cols=78  Identities=13%  Similarity=0.072  Sum_probs=51.7

Q ss_pred             eEEEeec-hHHHhhccc------CCCCeEEEeCCCCC---CCC--CccEEeehhhhccCC---------hHHHHHHHHHH
Q 041250          140 ECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK---AIS--PAYAVLLKWILLDWN---------DEECVKILKKC  198 (259)
Q Consensus       140 ~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~---~~~--~~D~~~~~~vlh~~~---------d~~~~~il~~~  198 (259)
                      ++.+||+ +++++..++      ..+|++++..+=..   -.+  ..|+++++-  -++|         .+.....++.+
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNL--GYLPggDk~i~T~~~TTl~Al~~a   78 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNL--GYLPGGDKSITTKPETTLKALEAA   78 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEE--SB-CTS-TTSB--HHHHHHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEEC--CcCCCCCCCCCcCcHHHHHHHHHH
Confidence            5789999 888888776      45689998764433   233  478877763  2222         34457789999


Q ss_pred             HHhcccCCCCcEEEEEeeeecCCC
Q 041250          199 KEAITRDGKKRKVIIKDMIKENRK  222 (259)
Q Consensus       199 ~~~L~p~~~gg~lli~e~~~~~~~  222 (259)
                      .+.|+|   ||.|.|+=+.-.+.+
T Consensus        79 l~lL~~---gG~i~iv~Y~GH~gG   99 (140)
T PF06962_consen   79 LELLKP---GGIITIVVYPGHPGG   99 (140)
T ss_dssp             HHHEEE---EEEEEEEE--STCHH
T ss_pred             HHhhcc---CCEEEEEEeCCCCCC
Confidence            999999   899988887655544

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=89.90  E-value=2.1  Score=38.40  Aligned_cols=100  Identities=16%  Similarity=0.144  Sum_probs=63.1

Q ss_pred             cCCCCeEEEecCCc-hHHHHHHHHHCCCCeEEEeec-hHHHhhcccC-CCC-eEEEeCC-CCC---CC-C--CccEEeeh
Q 041250          112 FEGLNSLVDVGGGT-GTAAKAIAKAFPKLECTCFDL-PHVVNGLESD-LVN-LKYVGGD-MFK---AI-S--PAYAVLLK  180 (259)
Q Consensus       112 ~~~~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~r-i~~~~~d-~~~---~~-~--~~D~~~~~  180 (259)
                      .....+|+.+|+|. |..+..++++..-.+++++|. ++..+.+++. ... +.....+ +.+   .. +  ++|+++-.
T Consensus       182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~  261 (386)
T cd08283         182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDA  261 (386)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEEC
Confidence            45567899999998 999999999986445888886 7777777652 211 1111111 211   11 1  37777653


Q ss_pred             h---------------hhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          181 W---------------ILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       181 ~---------------vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      -               +|+..++.  ...+.++.+.+++   +|+++++..
T Consensus       262 vg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~---~G~iv~~g~  307 (386)
T cd08283         262 VGMEAHGSPLHKAEQALLKLETDR--PDALREAIQAVRK---GGTVSIIGV  307 (386)
T ss_pred             CCCcccccccccccccccccccCc--hHHHHHHHHHhcc---CCEEEEEcC
Confidence            1               22222332  3578888999999   899988854

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A

Probab=89.69  E-value=0.058  Score=33.12  Aligned_cols=40  Identities=20%  Similarity=0.231  Sum_probs=31.4

Q ss_pred             HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceecccc
Q 041250            7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKL   47 (259)
Q Consensus         7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~   47 (259)
                      .+..|+..|.++ +++|..|||+.+|++...+.+.++.+..
T Consensus         4 ~~~~Il~~l~~~-~~~t~~ela~~~~is~~tv~~~l~~L~~   43 (48)
T PF13412_consen    4 TQRKILNYLREN-PRITQKELAEKLGISRSTVNRYLKKLEE   43 (48)
T ss_dssp             HHHHHHHHHHHC-TTS-HHHHHHHHTS-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc-CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            456788889985 6799999999999999999887776643

...

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=89.11  E-value=3.2  Score=38.81  Aligned_cols=92  Identities=18%  Similarity=0.205  Sum_probs=66.4

Q ss_pred             CCeEEEecCCchHHHHHHHHH----CCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-CCC--CccEEeehh
Q 041250          115 LNSLVDVGGGTGTAAKAIAKA----FPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AIS--PAYAVLLKW  181 (259)
Q Consensus       115 ~~~vlDvGgG~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~~~--~~D~~~~~~  181 (259)
                      ...|.-+|+|.|-+..+..++    .-.++.+.++- |.++...+.     -..||+++..||.+ .-|  ++|+++ +-
T Consensus       368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~V-SE  446 (649)
T KOG0822|consen  368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIV-SE  446 (649)
T ss_pred             eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchH-HH
Confidence            457889999999998887664    34566777776 877765554     46899999999998 544  488654 55


Q ss_pred             hhccCCh-HHHHHHHHHHHHhcccCCCCcE
Q 041250          182 ILLDWND-EECVKILKKCKEAITRDGKKRK  210 (259)
Q Consensus       182 vlh~~~d-~~~~~il~~~~~~L~p~~~gg~  210 (259)
                      .|-.+.| |-.-+-|..+-..|+|   .|.
T Consensus       447 LLGSFGDNELSPECLDG~q~fLkp---dgI  473 (649)
T KOG0822|consen  447 LLGSFGDNELSPECLDGAQKFLKP---DGI  473 (649)
T ss_pred             hhccccCccCCHHHHHHHHhhcCC---Cce
Confidence            5665654 3345668888888999   653

>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A

Probab=88.94  E-value=0.12  Score=33.96  Aligned_cols=59  Identities=20%  Similarity=0.237  Sum_probs=37.9

Q ss_pred             HcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCC-----CCCCceeecCHhh
Q 041250            8 QLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNN-----NDEEQGYVLTNAS   66 (259)
Q Consensus         8 ~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~-----~~~~~~y~~t~~~   66 (259)
                      +.-+...|....++.|..+||+.++++...+.+.+..+...+++..     +.....|.+|+.+
T Consensus         5 q~~vL~~l~~~~~~~t~~~l~~~~~~~~~~vs~~i~~L~~~glv~~~~~~~d~R~~~~~LT~~G   68 (68)
T PF13463_consen    5 QWQVLRALAHSDGPMTQSDLAERLGISKSTVSRIIKKLEEKGLVEKERDPHDKRSKRYRLTPAG   68 (68)
T ss_dssp             HHHHHHHHT--TS-BEHHHHHHHTT--HHHHHHHHHHHHHTTSEEEEEESSCTTSEEEEE-HHH
T ss_pred             HHHHHHHHHccCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCCcCCeeEEEeCCCC
Confidence            3445556662238999999999999999999998888777665421     1223468888864

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=88.42  E-value=2.4  Score=35.00  Aligned_cols=100  Identities=13%  Similarity=0.193  Sum_probs=63.4

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCC--eEEEeec-hHHHhhccc----------------------------------
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKL--ECTCFDL-PHVVNGLES----------------------------------  155 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~--~~~~~D~-~~~~~~a~~----------------------------------  155 (259)
                      .++.++-|-.||.|.++.-+.--+++.  .+++-|+ +++++.|++                                  
T Consensus        50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~  129 (246)
T PF11599_consen   50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALE  129 (246)
T ss_dssp             -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred             CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence            467899999999999999887776554  4788898 888887764                                  


Q ss_pred             -------------CCCCeEEEeCCCCCCCC--------CccEEeehh---hhccCC----hHHHHHHHHHHHHhcccCCC
Q 041250          156 -------------DLVNLKYVGGDMFKAIS--------PAYAVLLKW---ILLDWN----DEECVKILKKCKEAITRDGK  207 (259)
Q Consensus       156 -------------~~~ri~~~~~d~~~~~~--------~~D~~~~~~---vlh~~~----d~~~~~il~~~~~~L~p~~~  207 (259)
                                   ..........|.|++.+        ..|+|+.--   -+-+|.    .+-+.++|..++++|.+   
T Consensus       130 sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~---  206 (246)
T PF11599_consen  130 SADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPE---  206 (246)
T ss_dssp             HHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-T---
T ss_pred             HHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCC---
Confidence                         12346678889998422        268777543   334564    34567899999999955   


Q ss_pred             CcEEEEEe
Q 041250          208 KRKVIIKD  215 (259)
Q Consensus       208 gg~lli~e  215 (259)
                      ++.+.|++
T Consensus       207 ~sVV~v~~  214 (246)
T PF11599_consen  207 RSVVAVSD  214 (246)
T ss_dssp             T-EEEEEE
T ss_pred             CcEEEEec
Confidence            56655544

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein

Probab=88.09  E-value=0.27  Score=34.67  Aligned_cols=62  Identities=16%  Similarity=0.137  Sum_probs=45.3

Q ss_pred             HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCC-----CCceeecCHhhhhh
Q 041250            7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNND-----EEQGYVLTNASKLL   69 (259)
Q Consensus         7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~-----~~~~y~~t~~~~~l   69 (259)
                      .++.++..|... ++.|..+||+.+++++..+.+.++.|...+++....     ....|.+|+.+..+
T Consensus        11 ~~~~il~~l~~~-~~~~~~~la~~~~~s~~~i~~~l~~L~~~g~v~~~~~~~~~r~~~~~lT~~g~~~   77 (101)
T smart00347       11 TQFLVLRILYEE-GPLSVSELAKRLGVSPSTVTRVLDRLEKKGLIRRLPSPEDRRSVLVSLTEEGREL   77 (101)
T ss_pred             HHHHHHHHHHHc-CCcCHHHHHHHHCCCchhHHHHHHHHHHCCCeEecCCCCCCCeEEEEECHhHHHH
Confidence            456778888764 679999999999999999999888877665542111     12357788877643

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=88.05  E-value=3.1  Score=32.89  Aligned_cols=94  Identities=16%  Similarity=0.209  Sum_probs=59.0

Q ss_pred             ecCCchHHHHHHHHHCC---CCeEEEeec-hHHHhhccc--------CCCCeEEEeC-CCCC---CC--C--CccEEeeh
Q 041250          121 VGGGTGTAAKAIAKAFP---KLECTCFDL-PHVVNGLES--------DLVNLKYVGG-DMFK---AI--S--PAYAVLLK  180 (259)
Q Consensus       121 vGgG~G~~~~~l~~~~p---~~~~~~~D~-~~~~~~a~~--------~~~ri~~~~~-d~~~---~~--~--~~D~~~~~  180 (259)
                      ||=|.-.++..|++.++   ++-+|.+|- .++.+....        ....++++.+ |..+   ..  .  .||.|++.
T Consensus         3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN   82 (166)
T PF10354_consen    3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN   82 (166)
T ss_pred             eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence            67788889999999887   444677776 333333331        2344444333 6555   12  1  49999887


Q ss_pred             hhhccC-----------ChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250          181 WILLDW-----------NDEECVKILKKCKEAITRDGKKRKVIIKDMI  217 (259)
Q Consensus       181 ~vlh~~-----------~d~~~~~il~~~~~~L~p~~~gg~lli~e~~  217 (259)
                      +-..-.           ..+-...+++.+.+.|++   +|.|.|.-.-
T Consensus        83 FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~---~G~IhVTl~~  127 (166)
T PF10354_consen   83 FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKP---DGEIHVTLKD  127 (166)
T ss_pred             CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCC
Confidence            643321           122335678888889999   8998887653

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=87.84  E-value=1.1  Score=37.33  Aligned_cols=94  Identities=17%  Similarity=0.270  Sum_probs=65.2

Q ss_pred             ccCCCCeEEEecCCchHHHHHHHHHC-C----C-C---eEEEeechHHHhhcccCCCCeEEEeCCCCCC---------CC
Q 041250          111 VFEGLNSLVDVGGGTGTAAKAIAKAF-P----K-L---ECTCFDLPHVVNGLESDLVNLKYVGGDMFKA---------IS  172 (259)
Q Consensus       111 ~~~~~~~vlDvGgG~G~~~~~l~~~~-p----~-~---~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~~---------~~  172 (259)
                      .+.+..++||+..-.|.++.-+.++. .    . -   +++.+|+..|..     -+.|.-+.+|+.++         +.
T Consensus        38 i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaP-----I~GV~qlq~DIT~~stae~Ii~hfg  112 (294)
T KOG1099|consen   38 IFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAP-----IEGVIQLQGDITSASTAEAIIEHFG  112 (294)
T ss_pred             HHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCc-----cCceEEeecccCCHhHHHHHHHHhC
Confidence            35778899999999999999998763 2    1 1   288999866653     45677888888872         22


Q ss_pred             --CccEEeehh-----hhccCChHHHHHH----HHHHHHhcccCCCCcEEE
Q 041250          173 --PAYAVLLKW-----ILLDWNDEECVKI----LKKCKEAITRDGKKRKVI  212 (259)
Q Consensus       173 --~~D~~~~~~-----vlh~~~d~~~~~i----l~~~~~~L~p~~~gg~ll  212 (259)
                        ++|+|++-.     -+|+++.=-..++    |.-...+|+|   ||.++
T Consensus       113 gekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~---Gg~FV  160 (294)
T KOG1099|consen  113 GEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKP---GGSFV  160 (294)
T ss_pred             CCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecC---CCeee
Confidence              489998864     5787764322233    3444568999   88754

>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B

Probab=87.72  E-value=0.065  Score=34.79  Aligned_cols=47  Identities=23%  Similarity=0.298  Sum_probs=35.5

Q ss_pred             HHHHHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccC
Q 041250            3 LKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSS   50 (259)
Q Consensus         3 L~~a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~   50 (259)
                      |..-.++.|+..|... +|.|+.|||+.+|+++..+++=|+.|...++
T Consensus         7 L~~p~R~~Il~~L~~~-~~~t~~ela~~l~~~~~t~s~hL~~L~~aGl   53 (61)
T PF12840_consen    7 LSDPTRLRILRLLASN-GPMTVSELAEELGISQSTVSYHLKKLEEAGL   53 (61)
T ss_dssp             HTSHHHHHHHHHHHHC-STBEHHHHHHHHTS-HHHHHHHHHHHHHTTS
T ss_pred             hCCHHHHHHHHHHhcC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCC
Confidence            3445778899999432 8999999999999999999886666554443

...

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=87.62  E-value=1.5  Score=37.05  Aligned_cols=33  Identities=24%  Similarity=0.489  Sum_probs=25.0

Q ss_pred             CCeEEEecCCchHHHHHHHHHCC--------CCeEEEeech
Q 041250          115 LNSLVDVGGGTGTAAKAIAKAFP--------KLECTCFDLP  147 (259)
Q Consensus       115 ~~~vlDvGgG~G~~~~~l~~~~p--------~~~~~~~D~~  147 (259)
                      +-+|+++|+|+|.++..+++...        .++++.++.+
T Consensus        19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~S   59 (252)
T PF02636_consen   19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEIS   59 (252)
T ss_dssp             -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TT
T ss_pred             CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCC
Confidence            47999999999999999988533        3589999984

; PDB: 4F3N_A 1ZKD_B.

>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B

Probab=87.39  E-value=0.17  Score=30.28  Aligned_cols=32  Identities=16%  Similarity=0.230  Sum_probs=24.7

Q ss_pred             HHcCcchhhhcCCCCCCHHHHHHHcCCCccccc
Q 041250            7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQ   39 (259)
Q Consensus         7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~   39 (259)
                      ++..|.+.|..+ +..|+.+||+.+|+++..+.
T Consensus         4 ~D~~Il~~Lq~d-~r~s~~~la~~lglS~~~v~   35 (42)
T PF13404_consen    4 LDRKILRLLQED-GRRSYAELAEELGLSESTVR   35 (42)
T ss_dssp             HHHHHHHHHHH--TTS-HHHHHHHHTS-HHHHH
T ss_pred             HHHHHHHHHHHc-CCccHHHHHHHHCcCHHHHH
Confidence            566788889885 89999999999999987664

...

>TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR

Probab=87.09  E-value=0.21  Score=38.08  Aligned_cols=47  Identities=23%  Similarity=0.335  Sum_probs=37.5

Q ss_pred             CCCCHHHHHHHcCCCccccccceeccccccCCCC-CCCCceeecCHhh
Q 041250           20 KPMTLNELVSALTINLSKTQCFFAQQKLVSSGNN-NDEEQGYVLTNAS   66 (259)
Q Consensus        20 ~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~-~~~~~~y~~t~~~   66 (259)
                      ++.|.++||+.+++++..+.++|..|.-.+++.. ...+|.|.++...
T Consensus        24 ~~~s~~~ia~~~~ip~~~l~kil~~L~~~glv~s~~G~~Ggy~l~~~~   71 (135)
T TIGR02010        24 GPVTLADISERQGISLSYLEQLFAKLRKAGLVKSVRGPGGGYQLGRPA   71 (135)
T ss_pred             CcCcHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEeCCCCCEeccCCH
Confidence            5899999999999999999999998877665432 2445679887644

This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system.

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=86.68  E-value=1.2  Score=37.88  Aligned_cols=35  Identities=20%  Similarity=0.359  Sum_probs=31.2

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHC-----CCCeEEEeec
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAF-----PKLECTCFDL  146 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~-----p~~~~~~~D~  146 (259)
                      +.+...+||+|||.|.++..+.+..     +...++.+|.
T Consensus        16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR   55 (259)
T PF05206_consen   16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDR   55 (259)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEec
Confidence            5667899999999999999999988     5678999998

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=85.85  E-value=1.5  Score=37.19  Aligned_cols=70  Identities=20%  Similarity=0.177  Sum_probs=41.5

Q ss_pred             HHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCCCCCCccEEeehhhhccCChHHHHHHHHHHHHhccc
Q 041250          128 AAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDEECVKILKKCKEAITR  204 (259)
Q Consensus       128 ~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~~~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p  204 (259)
                      ++.+|.++.|+.+++++|. +..++.+.+. +-+.-...+ .+....+|+|+++     .|.+...++++++...+++
T Consensus         1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~-g~~~~~~~~-~~~~~~~Dlvvla-----vP~~~~~~~l~~~~~~~~~   71 (258)
T PF02153_consen    1 IALALRKAGPDVEVYGYDRDPETLEAALEL-GIIDEASTD-IEAVEDADLVVLA-----VPVSAIEDVLEEIAPYLKP   71 (258)
T ss_dssp             HHHHHHHTTTTSEEEEE-SSHHHHHHHHHT-TSSSEEESH-HHHGGCCSEEEE------S-HHHHHHHHHHHHCGS-T
T ss_pred             ChHHHHhCCCCeEEEEEeCCHHHHHHHHHC-CCeeeccCC-HhHhcCCCEEEEc-----CCHHHHHHHHHHhhhhcCC
Confidence            4678888999999999998 7777777532 111111111 1223457988887     4445556666666666655

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms

Probab=85.48  E-value=0.26  Score=29.84  Aligned_cols=30  Identities=13%  Similarity=0.341  Sum_probs=20.8

Q ss_pred             cchhhhcCCCCCCHHHHHHHcCCCcccccccee
Q 041250           11 IPDIINKHGKPMTLNELVSALTINLSKTQCFFA   43 (259)
Q Consensus        11 lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~   43 (259)
                      +.+.+.+  | .|+.+||+.+|++...+.|+|.
T Consensus        14 i~~l~~~--G-~si~~IA~~~gvsr~TvyR~l~   43 (45)
T PF02796_consen   14 IKELYAE--G-MSIAEIAKQFGVSRSTVYRYLN   43 (45)
T ss_dssp             HHHHHHT--T---HHHHHHHTTS-HHHHHHHHC
T ss_pred             HHHHHHC--C-CCHHHHHHHHCcCHHHHHHHHh
Confidence            3444553  4 9999999999999998888765

Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=85.18  E-value=4  Score=35.02  Aligned_cols=99  Identities=15%  Similarity=0.177  Sum_probs=63.3

Q ss_pred             eEEEecCCchHHHHHHHHHCCCCe-EEEeec-hHHHhhcccCCCCeEEEeCCCCC--C---CCCccEEeehhhhccCCh-
Q 041250          117 SLVDVGGGTGTAAKAIAKAFPKLE-CTCFDL-PHVVNGLESDLVNLKYVGGDMFK--A---ISPAYAVLLKWILLDWND-  188 (259)
Q Consensus       117 ~vlDvGgG~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~--~---~~~~D~~~~~~vlh~~~d-  188 (259)
                      +++|+-||.|.+...+.+..  .+ +..+|+ +.+++..+...+.. .+.+|+.+  +   .+.+|+++...-+..++. 
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G--~~~v~a~e~~~~a~~~~~~N~~~~-~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~a   78 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAG--FEIVAANEIDKSAAETYEANFPNK-LIEGDITKIDEKDFIPDIDLLTGGFPCQPFSIA   78 (275)
T ss_pred             cEEEEccCcchHHHHHHHcC--CEEEEEEeCCHHHHHHHHHhCCCC-CccCccccCchhhcCCCCCEEEeCCCChhhhHH
Confidence            68999999999999998873  55 577898 77777666532222 55667766  1   346899998875554431 


Q ss_pred             -------HHHHHHHHHHHHhcccCCCCcEEEEEeeeecC
Q 041250          189 -------EECVKILKKCKEAITRDGKKRKVIIKDMIKEN  220 (259)
Q Consensus       189 -------~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~  220 (259)
                             +..-.++.++.+.++-.  .-+++++|.+..-
T Consensus        79 g~~~~~~d~r~~L~~~~~~~i~~~--~P~~~v~ENV~g~  115 (275)
T cd00315          79 GKRKGFEDTRGTLFFEIIRILKEK--KPKYFLLENVKGL  115 (275)
T ss_pred             hhcCCCCCchHHHHHHHHHHHHhc--CCCEEEEEcCcch
Confidence                   12223444444444321  2368999988654

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator)

Probab=84.77  E-value=0.32  Score=36.63  Aligned_cols=48  Identities=15%  Similarity=0.203  Sum_probs=37.5

Q ss_pred             CCCCHHHHHHHcCCCccccccceeccccccCCCCC-CCCceeecCHhhh
Q 041250           20 KPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNN-DEEQGYVLTNASK   67 (259)
Q Consensus        20 ~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~-~~~~~y~~t~~~~   67 (259)
                      ++.|.++||+.+++++..+.++++.|...+++... ..+|.|.++...+
T Consensus        24 ~~~s~~eia~~~~i~~~~v~~il~~L~~~gli~~~~g~~ggy~l~~~~~   72 (132)
T TIGR00738        24 GPVSVKEIAERQGISRSYLEKILRTLRRAGLVESVRGPGGGYRLARPPE   72 (132)
T ss_pred             CcCcHHHHHHHHCcCHHHHHHHHHHHHHCCcEEeccCCCCCccCCCCHH
Confidence            58999999999999999999999988776655322 3456788875543

This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency.

>TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR

Probab=84.66  E-value=0.42  Score=35.30  Aligned_cols=63  Identities=16%  Similarity=0.075  Sum_probs=46.2

Q ss_pred             HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCC--C---CCceeecCHhhhhhh
Q 041250            7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNN--D---EEQGYVLTNASKLLL   70 (259)
Q Consensus         7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~--~---~~~~y~~t~~~~~l~   70 (259)
                      .+..++..|..+ ++.|..+||+.+++++..+.+.++.+..-+++...  .   ..-.+.+|+.++.+.
T Consensus        29 ~q~~iL~~l~~~-~~~t~~ela~~~~~~~~tvs~~l~~Le~~GlI~r~~~~~D~R~~~v~LT~~G~~~~   96 (118)
T TIGR02337        29 QQWRILRILAEQ-GSMEFTQLANQACILRPSLTGILARLERDGLVTRLKASNDQRRVYISLTPKGQALY   96 (118)
T ss_pred             HHHHHHHHHHHc-CCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHH
Confidence            345577778764 78999999999999999999988887665544221  1   223689999887543

This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate.

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=84.64  E-value=6  Score=35.18  Aligned_cols=95  Identities=19%  Similarity=0.108  Sum_probs=67.2

Q ss_pred             CeEEEecCCc-hHHHHHHHHHCCCCeEEEeec-hHHHhhccc-CC-CCeEEEeCC-CC----C-CCC-CccEEeehhhhc
Q 041250          116 NSLVDVGGGT-GTAAKAIAKAFPKLECTCFDL-PHVVNGLES-DL-VNLKYVGGD-MF----K-AIS-PAYAVLLKWILL  184 (259)
Q Consensus       116 ~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~-~ri~~~~~d-~~----~-~~~-~~D~~~~~~vlh  184 (259)
                      .+|+=+|+|. |.++..+++.+...++++.|. +.-++.|++ .. +.+.....+ .-    + ... ++|+++-..-  
T Consensus       170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G--  247 (350)
T COG1063         170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG--  247 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC--
Confidence            3899999997 777788889988889999998 888999987 32 333333232 11    1 112 5898886543  


Q ss_pred             cCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCC
Q 041250          185 DWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENR  221 (259)
Q Consensus       185 ~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~  221 (259)
                            ....+..+.++++|   +|++.++-....+.
T Consensus       248 ------~~~~~~~ai~~~r~---gG~v~~vGv~~~~~  275 (350)
T COG1063         248 ------SPPALDQALEALRP---GGTVVVVGVYGGED  275 (350)
T ss_pred             ------CHHHHHHHHHHhcC---CCEEEEEeccCCcc
Confidence                  12367888888999   99999888775553

>PRK10141 DNA-binding transcriptional repressor ArsR; Provisional

Probab=84.43  E-value=0.21  Score=37.16  Aligned_cols=62  Identities=18%  Similarity=0.149  Sum_probs=44.5

Q ss_pred             HHHHHHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCC--CCceeecCH
Q 041250            2 TLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNND--EEQGYVLTN   64 (259)
Q Consensus         2 aL~~a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~--~~~~y~~t~   64 (259)
                      ||.--.++.|+..|... ++.++.|||+.+++++..+++=|+.|...+++..+.  ..-.|++.+
T Consensus        12 aLadptRl~IL~~L~~~-~~~~v~ela~~l~lsqstvS~HL~~L~~AGLV~~~r~Gr~~~Y~l~~   75 (117)
T PRK10141         12 ILSDETRLGIVLLLRES-GELCVCDLCTALDQSQPKISRHLALLRESGLLLDRKQGKWVHYRLSP   75 (117)
T ss_pred             HhCCHHHHHHHHHHHHc-CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEEEcCEEEEEECc
Confidence            34445788999999752 689999999999999999998676666555442222  223477765

>COG4742 Predicted transcriptional regulator [Transcription]

Probab=84.36  E-value=0.52  Score=39.96  Aligned_cols=63  Identities=16%  Similarity=0.193  Sum_probs=47.7

Q ss_pred             HHHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhhhhhhc
Q 041250            5 CAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASKLLLK   71 (259)
Q Consensus         5 ~a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~~~l~~   71 (259)
                      ..-+.+|+-.|.+  ||.|.+||-..+++++..+..=+.-+.-.+++  ..+++.|++|..++.++.
T Consensus        12 SekRk~lLllL~e--gPkti~EI~~~l~vs~~ai~pqiKkL~~~~LV--~~~~~~Y~LS~~G~iiv~   74 (260)
T COG4742          12 SEKRKDLLLLLKE--GPKTIEEIKNELNVSSSAILPQIKKLKDKGLV--VQEGDRYSLSSLGKIIVE   74 (260)
T ss_pred             cHHHHHHHHHHHh--CCCCHHHHHHHhCCCcHHHHHHHHHHhhCCCE--EecCCEEEecchHHHHHH
Confidence            4456778888887  89999999999999988876534444333332  567899999999996654

>TIGR00122 birA_repr_reg BirA biotin operon repressor domain

Probab=84.19  E-value=0.24  Score=32.90  Aligned_cols=56  Identities=14%  Similarity=0.169  Sum_probs=38.7

Q ss_pred             HcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhh
Q 041250            8 QLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNAS   66 (259)
Q Consensus         8 ~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~   66 (259)
                      ++.++..|.+  ++.|..+||+.+|++...+.+-++.+...++. ....+..|.+.+..
T Consensus         2 ~~~il~~L~~--~~~~~~eLa~~l~vS~~tv~~~l~~L~~~g~~-i~~~~~g~~l~~~~   57 (69)
T TIGR00122         2 PLRLLALLAD--NPFSGEKLGEALGMSRTAVNKHIQTLREWGVD-VLTVGKGYRLPPPI   57 (69)
T ss_pred             hHHHHHHHHc--CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCe-EEecCCceEecCcc
Confidence            3457778886  78999999999999999999877766544431 11124556665443

This model may recognize some other putative repressor proteins, such as DnrO of Streptomyces peucetius with scores below the noise cutoff but with significance shown by low E-value.

>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets

Probab=84.10  E-value=0.24  Score=31.21  Aligned_cols=38  Identities=16%  Similarity=0.216  Sum_probs=28.3

Q ss_pred             CcchhhhcCCCCCCHHHHHHHcCCCccccccceecccc
Q 041250           10 GIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKL   47 (259)
Q Consensus        10 ~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~   47 (259)
                      .|+..|.+.++++|.++||+.++++.+.+.+-+..+..
T Consensus         4 ~il~~L~~~~~~it~~eLa~~l~vS~rTi~~~i~~L~~   41 (55)
T PF08279_consen    4 QILKLLLESKEPITAKELAEELGVSRRTIRRDIKELRE   41 (55)
T ss_dssp             HHHHHHHHTTTSBEHHHHHHHCTS-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCcCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            35666743346799999999999999999986665543

The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....

>PF12324 HTH_15: Helix-turn-helix domain of alkylmercury lyase; InterPro: IPR024259 Alkylmercury lyase (EC:4

Probab=84.08  E-value=0.27  Score=33.48  Aligned_cols=36  Identities=22%  Similarity=0.392  Sum_probs=26.1

Q ss_pred             cchhhhcCCCCCCHHHHHHHcCCCccccccceecccc
Q 041250           11 IPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKL   47 (259)
Q Consensus        11 lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~   47 (259)
                      |+..|.. |+|+|+++||.++|.+...+...|..+..
T Consensus        29 LLr~LA~-G~PVt~~~LA~a~g~~~e~v~~~L~~~p~   64 (77)
T PF12324_consen   29 LLRLLAK-GQPVTVEQLAAALGWPVEEVRAALAAMPD   64 (77)
T ss_dssp             HHHHHTT-TS-B-HHHHHHHHT--HHHHHHHHHH-TT
T ss_pred             HHHHHHc-CCCcCHHHHHHHHCCCHHHHHHHHHhCCC
Confidence            5677886 79999999999999999999888876643

99.1.2) cleaves the carbon-mercury bond of organomercurials such as phenylmercuric acetate. This entry represents the N-terminal helix-turn-helix domain.; PDB: 3FN8_B 3F2G_B 3F0P_A 3F2F_B 3F2H_A 3F0O_B 1S6L_A.

>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]

Probab=83.96  E-value=0.88  Score=41.64  Aligned_cols=102  Identities=14%  Similarity=0.085  Sum_probs=64.5

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCC--eEEEeec-hHHHhhccc-CCC--CeE--EEeC-CCCC---CCC---CccEEee
Q 041250          115 LNSLVDVGGGTGTAAKAIAKAFPKL--ECTCFDL-PHVVNGLES-DLV--NLK--YVGG-DMFK---AIS---PAYAVLL  179 (259)
Q Consensus       115 ~~~vlDvGgG~G~~~~~l~~~~p~~--~~~~~D~-~~~~~~a~~-~~~--ri~--~~~~-d~~~---~~~---~~D~~~~  179 (259)
                      +..+.|+|.|.|.-..++....++.  .++.+|. -.+...... ..+  .+.  ++.. -|+.   |.+   +||++++
T Consensus       201 pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi~  280 (491)
T KOG2539|consen  201 PDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVIC  280 (491)
T ss_pred             hHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEEe
Confidence            5678999999888887777777764  3788887 444444433 111  111  1111 2332   332   4999999


Q ss_pred             hhhhccCChH-HHHHHHHHHHH-hcccCCCCcEEEEEeeeec
Q 041250          180 KWILLDWNDE-ECVKILKKCKE-AITRDGKKRKVIIKDMIKE  219 (259)
Q Consensus       180 ~~vlh~~~d~-~~~~il~~~~~-~L~p~~~gg~lli~e~~~~  219 (259)
                      +|++|..... ......++.++ ..++   |+.++|+|....
T Consensus       281 ah~l~~~~s~~~R~~v~~s~~r~~~r~---g~~lViIe~g~~  319 (491)
T KOG2539|consen  281 AHKLHELGSKFSRLDVPESLWRKTDRS---GYFLVIIEKGTT  319 (491)
T ss_pred             eeeeeccCCchhhhhhhHHHHHhccCC---CceEEEEecCCc
Confidence            9999987643 34455666654 5566   899999986433

>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis

Probab=83.74  E-value=0.081  Score=35.10  Aligned_cols=44  Identities=16%  Similarity=0.033  Sum_probs=35.1

Q ss_pred             HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCC
Q 041250            7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSG   51 (259)
Q Consensus         7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~   51 (259)
                      .|..++..|-.. ++.|+.|||+.+|++...+.+.|..|...+++
T Consensus         9 ~E~~vy~~Ll~~-~~~t~~eIa~~l~i~~~~v~~~L~~L~~~GlV   52 (68)
T PF01978_consen    9 NEAKVYLALLKN-GPATAEEIAEELGISRSTVYRALKSLEEKGLV   52 (68)
T ss_dssp             HHHHHHHHHHHH-CHEEHHHHHHHHTSSHHHHHHHHHHHHHTTSE
T ss_pred             HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCE
Confidence            455566666433 89999999999999999999999888766654

TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.

>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]

Probab=83.53  E-value=1.6  Score=37.64  Aligned_cols=65  Identities=11%  Similarity=0.078  Sum_probs=52.4

Q ss_pred             hHHHhhcccCCCCeEEEeCCCCC-----CCCCccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEE
Q 041250          147 PHVVNGLESDLVNLKYVGGDMFK-----AISPAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIK  214 (259)
Q Consensus       147 ~~~~~~a~~~~~ri~~~~~d~~~-----~~~~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~  214 (259)
                      +++-+.+++...||.++.+|+.+     |....|-|++..+-..++|.+...++.++.+.+.|   |.++++-
T Consensus       296 ~~~YEsir~n~~RV~ihha~~iE~l~~k~ag~Vdr~iLlDaqdwmtd~qln~lws~isrta~~---gA~VifR  365 (414)
T COG5379         296 EGVYESIRQNLRRVAIHHADIIELLAGKPAGNVDRYILLDAQDWMTDGQLNSLWSEISRTAEA---GARVIFR  365 (414)
T ss_pred             hhhHHHHHhhhhheeeecccHHHHhccCCCCCcceEEEecchhhcccchHHHHHHHHhhccCC---CcEEEEe
Confidence            45555555567899999999987     22358999999998878999999999999999999   7776654

>PRK11920 rirA iron-responsive transcriptional regulator; Reviewed

Probab=83.26  E-value=0.41  Score=37.35  Aligned_cols=47  Identities=11%  Similarity=0.000  Sum_probs=37.7

Q ss_pred             CCCCHHHHHHHcCCCccccccceeccccccCCCC-CCCCceeecCHhh
Q 041250           20 KPMTLNELVSALTINLSKTQCFFAQQKLVSSGNN-NDEEQGYVLTNAS   66 (259)
Q Consensus        20 ~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~-~~~~~~y~~t~~~   66 (259)
                      ++.|..+||+..++++..+.+++..|.-.+++.. ....|.|.++...
T Consensus        23 ~~~s~~eIA~~~~is~~~L~kIl~~L~~aGlv~S~rG~~GGy~La~~p   70 (153)
T PRK11920         23 KLSRIPEIARAYGVSELFLFKILQPLVEAGLVETVRGRNGGVRLGRPA   70 (153)
T ss_pred             CcCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecCCCCCeeecCCH
Confidence            5789999999999999999999998876665433 3456789887654

>TIGR01321 TrpR trp operon repressor, proteobacterial

Probab=83.04  E-value=0.78  Score=32.60  Aligned_cols=40  Identities=15%  Similarity=0.110  Sum_probs=33.4

Q ss_pred             HHHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccc
Q 041250            5 CAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQK   46 (259)
Q Consensus         5 ~a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~   46 (259)
                      .+.+.+|+..|-+  ++.|..|||+++|++...+.|.=+++.
T Consensus        41 l~~R~~i~~~Ll~--~~~tQrEIa~~lGiS~atIsR~sn~lk   80 (94)
T TIGR01321        41 LGDRIRIVNELLN--GNMSQREIASKLGVSIATITRGSNNLK   80 (94)
T ss_pred             HHHHHHHHHHHHh--CCCCHHHHHHHhCCChhhhhHHHhhcc
Confidence            4678899998876  799999999999999999988555544

This model represents TrpR, the repressor of the trp operon. It is found so far only in the gamma subdivision of the proteobacteria and in Chlamydia trachomatis. All members belong to species capable of tryptophan biosynthesis.

>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A

Probab=83.00  E-value=0.16  Score=33.19  Aligned_cols=40  Identities=15%  Similarity=0.361  Sum_probs=30.4

Q ss_pred             CcchhhhcCCCCCCHHHHHHHcCCCccccccceecccccc
Q 041250           10 GIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVS   49 (259)
Q Consensus        10 ~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~   49 (259)
                      .|.+.|....+|.+..|||+.+|++...++++|..|.--+
T Consensus         4 ~Il~~i~~~~~p~~T~eiA~~~gls~~~aR~yL~~Le~eG   43 (62)
T PF04703_consen    4 KILEYIKEQNGPLKTREIADALGLSIYQARYYLEKLEKEG   43 (62)
T ss_dssp             CHHHHHHHHTS-EEHHHHHHHHTS-HHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHHHHCC
Confidence            4566676633899999999999999999999998876543

>TIGR02702 SufR_cyano iron-sulfur cluster biosynthesis transcriptional regulator SufR

Probab=82.55  E-value=0.42  Score=39.08  Aligned_cols=63  Identities=14%  Similarity=0.093  Sum_probs=44.8

Q ss_pred             HcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCC---CCCc----eeecCHhhhhhhc
Q 041250            8 QLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNN---DEEQ----GYVLTNASKLLLK   71 (259)
Q Consensus         8 ~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~---~~~~----~y~~t~~~~~l~~   71 (259)
                      +..|+..|... ++.|+.|||+.+|+++..+.+.|+.|..-+++...   ...|    .|.+|+.+..+..
T Consensus         3 r~~IL~~L~~~-~~~t~~eLA~~lgis~~tV~~~L~~Le~~GlV~r~~~~~~~gRp~~~y~LT~~G~~~~~   72 (203)
T TIGR02702         3 KEDILSYLLKQ-GQATAAALAEALAISPQAVRRHLKDLETEGLIEYEAVVQGMGRPQYHYQLSRQGREQFP   72 (203)
T ss_pred             HHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEeecccCCCCCceEEEECcchhhhcc
Confidence            34567777654 78999999999999999999988887665544211   1122    3789988875443

All members of this cyanobacterial protein family are the transcriptional regulator SufR and regulate the SUF system, which makes possible iron-sulfur cluster biosynthesis despite exposure to oxygen. In all cases, the sufR gene is encoded near SUF system genes but in the opposite direction. This DNA-binding protein belongs to the the DeoR family of helix-loop-helix proteins. All members also have a probable metal-binding motif C-X(12)-C-X(13)-C-X(14)-C near the C-terminus.

>PRK03902 manganese transport transcriptional regulator; Provisional

Probab=82.31  E-value=0.63  Score=35.69  Aligned_cols=54  Identities=17%  Similarity=0.183  Sum_probs=40.9

Q ss_pred             hhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhhhhh
Q 041250           14 IINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASKLL   69 (259)
Q Consensus        14 ~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~~~l   69 (259)
                      .+.. +++.++.+||+.+++++..+.+.++.|..-+++. ....+.|.+|+.++.+
T Consensus        16 l~~~-~~~~~~~ela~~l~vs~~svs~~l~~L~~~Gli~-~~~~~~i~LT~~G~~~   69 (142)
T PRK03902         16 LIEE-KGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLI-YEKYRGLVLTPKGKKI   69 (142)
T ss_pred             HHhc-CCCcCHHHHHHHhCCChhHHHHHHHHHHHCCCEE-EecCceEEECHHHHHH
Confidence            3443 3789999999999999999999888877666542 1244679999988643

>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein

Probab=82.22  E-value=0.33  Score=39.67  Aligned_cols=57  Identities=12%  Similarity=0.206  Sum_probs=42.5

Q ss_pred             HcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCC-CCceeecCHh
Q 041250            8 QLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNND-EEQGYVLTNA   65 (259)
Q Consensus         8 ~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~-~~~~y~~t~~   65 (259)
                      +..++..|... ++.+..|||+.+++++..+.+.+..|...+++.... ....|.+|+.
T Consensus       145 ~~~IL~~l~~~-g~~s~~eia~~l~is~stv~r~L~~Le~~GlI~r~~~r~~~~~lT~~  202 (203)
T TIGR01884       145 ELKVLEVLKAE-GEKSVKNIAKKLGKSLSTISRHLRELEKKGLVEQKGRKGKRYSLTKL  202 (203)
T ss_pred             HHHHHHHHHHc-CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEcCCccEEEeCCC
Confidence            45677777764 689999999999999999999888877665542222 4556888764

Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity.

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=82.11  E-value=2.1  Score=36.26  Aligned_cols=100  Identities=16%  Similarity=0.171  Sum_probs=54.3

Q ss_pred             CCeEEEecCCchHHHHHH---HHHC--CCCeEEEeec----hHHHhh-----------------------ccc-------
Q 041250          115 LNSLVDVGGGTGTAAKAI---AKAF--PKLECTCFDL----PHVVNG-----------------------LES-------  155 (259)
Q Consensus       115 ~~~vlDvGgG~G~~~~~l---~~~~--p~~~~~~~D~----~~~~~~-----------------------a~~-------  155 (259)
                      +..|+++|+=.|..++.+   ++.+  ++-++.++|-    |+.-..                       .++       
T Consensus        75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl  154 (248)
T PF05711_consen   75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGL  154 (248)
T ss_dssp             -SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTT
T ss_pred             CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcCC
Confidence            568999999999766544   3333  4557999984    332210                       000       


Q ss_pred             CCCCeEEEeCCCCCCCCC--ccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 041250          156 DLVNLKYVGGDMFKAISP--AYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIK  218 (259)
Q Consensus       156 ~~~ri~~~~~d~~~~~~~--~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~  218 (259)
                      ..++++++.|.|.+.+|.  .+-|-+-++=-||-+. ....|..++..|.|   ||.|++-|+..
T Consensus       155 ~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlYes-T~~aLe~lyprl~~---GGiIi~DDY~~  215 (248)
T PF05711_consen  155 LDDNVRFVKGWFPDTLPDAPIERIALLHLDCDLYES-TKDALEFLYPRLSP---GGIIIFDDYGH  215 (248)
T ss_dssp             SSTTEEEEES-HHHHCCC-TT--EEEEEE---SHHH-HHHHHHHHGGGEEE---EEEEEESSTTT
T ss_pred             CcccEEEECCcchhhhccCCCccEEEEEEeccchHH-HHHHHHHHHhhcCC---CeEEEEeCCCC
Confidence            246999999999774442  1112111111133333 46789999999999   77666666544

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor

Probab=81.86  E-value=0.68  Score=29.39  Aligned_cols=52  Identities=15%  Similarity=0.213  Sum_probs=36.9

Q ss_pred             cchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCC--CCCceeecCH
Q 041250           11 IPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNN--DEEQGYVLTN   64 (259)
Q Consensus        11 lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~--~~~~~y~~t~   64 (259)
                      |+..|..  ++.|..+|++.+++++..+.+.++.+...+++...  .....|.++.
T Consensus         2 il~~l~~--~~~~~~~i~~~l~is~~~v~~~l~~L~~~g~i~~~~~~~~~~~~~~~   55 (66)
T smart00418        2 ILKLLAE--GELCVCELAEILGLSQSTVSHHLKKLREAGLVESRREGKRVYYSLTD   55 (66)
T ss_pred             HHHHhhc--CCccHHHHHHHHCCCHHHHHHHHHHHHHCCCeeeeecCCEEEEEEch
Confidence            4455653  78999999999999999999988877665544221  2334566665

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=81.36  E-value=2.2  Score=35.76  Aligned_cols=79  Identities=15%  Similarity=0.220  Sum_probs=46.6

Q ss_pred             HHHHHhcccccCCC--CeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhh-cc-------c-------CCCCeEEEe
Q 041250          102 SVMIQKCKNVFEGL--NSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNG-LE-------S-------DLVNLKYVG  164 (259)
Q Consensus       102 ~~~~~~~~~~~~~~--~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~-a~-------~-------~~~ri~~~~  164 (259)
                      +.+++...  +.+.  .+|||.=+|-|.=+.-++..  +.++++++..+++.. .+       +       ...|++++.
T Consensus        63 ~~l~kA~G--lk~~~~~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~  138 (234)
T PF04445_consen   63 DPLAKAVG--LKPGMRPSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIH  138 (234)
T ss_dssp             SHHHHHTT---BTTB---EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEE
T ss_pred             cHHHHHhC--CCCCCCCEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEc
Confidence            55677766  4443  48999999999999998865  678999998544432 11       1       135999999


Q ss_pred             CCCCC--CCC--CccEEeehhhhc
Q 041250          165 GDMFK--AIS--PAYAVLLKWILL  184 (259)
Q Consensus       165 ~d~~~--~~~--~~D~~~~~~vlh  184 (259)
                      +|..+  ..+  .+|+|++--.+.
T Consensus       139 ~d~~~~L~~~~~s~DVVY~DPMFp  162 (234)
T PF04445_consen  139 GDALEYLRQPDNSFDVVYFDPMFP  162 (234)
T ss_dssp             S-CCCHCCCHSS--SEEEE--S--
T ss_pred             CCHHHHHhhcCCCCCEEEECCCCC
Confidence            99888  332  599999865443

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>PRK01381 Trp operon repressor; Provisional

Probab=81.08  E-value=1.1  Score=32.02  Aligned_cols=40  Identities=10%  Similarity=0.096  Sum_probs=33.7

Q ss_pred             HHHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccc
Q 041250            5 CAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQK   46 (259)
Q Consensus         5 ~a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~   46 (259)
                      .+.+++|+..|-.  |+.|..|||+.+|++...+.|-=+++.
T Consensus        41 l~~R~~I~~~L~~--g~~sQREIa~~lGvSiaTITRgsn~Lk   80 (99)
T PRK01381         41 LGTRVRIVEELLR--GELSQREIKQELGVGIATITRGSNSLK   80 (99)
T ss_pred             HHHHHHHHHHHHc--CCcCHHHHHHHhCCceeeehhhHHHhc
Confidence            4678999999987  899999999999999999888555443

>PRK11014 transcriptional repressor NsrR; Provisional

Probab=80.47  E-value=0.56  Score=35.99  Aligned_cols=47  Identities=9%  Similarity=0.106  Sum_probs=36.5

Q ss_pred             CCCCHHHHHHHcCCCccccccceeccccccCCCC-CCCCceeecCHhh
Q 041250           20 KPMTLNELVSALTINLSKTQCFFAQQKLVSSGNN-NDEEQGYVLTNAS   66 (259)
Q Consensus        20 ~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~-~~~~~~y~~t~~~   66 (259)
                      .+.|..+||+..|+++..++++|..|..-+++.. ...+|.|.+....
T Consensus        24 ~~~s~~~ia~~~~is~~~vrk~l~~L~~~Glv~s~~G~~GG~~l~~~~   71 (141)
T PRK11014         24 RMTSISEVTEVYGVSRNHMVKIINQLSRAGYVTAVRGKNGGIRLGKPA   71 (141)
T ss_pred             CccCHHHHHHHHCcCHHHHHHHHHHHHhCCEEEEecCCCCCeeecCCH
Confidence            5789999999999999999999998877665532 3455678776543

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=80.40  E-value=19  Score=31.71  Aligned_cols=101  Identities=12%  Similarity=0.023  Sum_probs=67.7

Q ss_pred             cCCCCeEEEecCCc-hHHHHHHHHHCCCCeEEEeec-hHHHhhcccC-CCCeEEEeCCC-----CCC----CC--CccEE
Q 041250          112 FEGLNSLVDVGGGT-GTAAKAIAKAFPKLECTCFDL-PHVVNGLESD-LVNLKYVGGDM-----FKA----IS--PAYAV  177 (259)
Q Consensus       112 ~~~~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~ri~~~~~d~-----~~~----~~--~~D~~  177 (259)
                      +....++|=+|+|. |.++...++.+...++++.|+ ++-++.|++. .+.+......-     .+.    ..  .+|+.
T Consensus       167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~  246 (354)
T KOG0024|consen  167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVT  246 (354)
T ss_pred             cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeE
Confidence            55678999999996 777777888888889999999 8999999982 22222222211     110    11  26766


Q ss_pred             eehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCC
Q 041250          178 LLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKK  223 (259)
Q Consensus       178 ~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~  223 (259)
                      +-...++        .-++....++++   ||.+++.....+.-..
T Consensus       247 ~dCsG~~--------~~~~aai~a~r~---gGt~vlvg~g~~~~~f  281 (354)
T KOG0024|consen  247 FDCSGAE--------VTIRAAIKATRS---GGTVVLVGMGAEEIQF  281 (354)
T ss_pred             EEccCch--------HHHHHHHHHhcc---CCEEEEeccCCCcccc
Confidence            6555443        345556778898   8998888876555443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	259
1zgj_A	354	Crystal Structure Of Isoflavanone 4'-O-Methyltransf		1e-44
1zga_A	357	Crystal Structure Of Isoflavanone 4'-o-methyltransf		1e-44
1zg3_A	358	Crystal Structure Of The Isoflavanone 4'-O-Methyltr		1e-44
1fp2_A	352	Crystal Structure Analysis Of Isoflavone O-Methyltr		1e-43
2qyo_A	357	Crystal Structure Of Isoflavone O-Methyltransferase		3e-43
1fpx_A	352	Crystal Structure Analysis Of Selenomethionine Subs		3e-39
3p9c_A	364	Crystal Structure Of Perennial Ryegrass Lpomt1 Boun		2e-22
1kyw_A	365	Crystal Structure Analysis Of Caffeic Acid5-Hydroxy		3e-22
3reo_A	368	Monolignol O-Methyltransferase (Momt) Length = 368		1e-21
1fp1_D	372	Crystal Structure Analysis Of Chalcone O-Methyltran		2e-18
1fpq_A	372	Crystal Structure Analysis Of Selenomethionine Subs		2e-15
1tw2_A	360	Crystal Structure Of Carminomycin-4-O-Methyltransfe		5e-06
3gwz_A	369	Structure Of The Mitomycin 7-O-Methyltransferase Mm		9e-06
1x19_A	359	Crystal Structure Of Bchu Involved In Bacteriochlor		2e-05
3lst_A	348	Crystal Structure Of Calo1, Methyltransferase In Ca		6e-05

>pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase Complexed With (+)-Pisatin Length = 354

Iteration: 1
 Score =  176 bits (446), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 120/315 (38%), Positives = 159/315 (50%), Gaps = 58/315 (18%)
Query: 1   MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQC------------FFAQQKLV 48
           M LK A +LGI D I+ HGKPMTL+EL S+L ++ SK               FFA+  + 
Sbjct: 21  MALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNILHRFLRLLTHNGFFAKTIVK 80
Query: 49  SSGNNNDEEQGYVLTNASKLLLKDNP---------------------------------L 75
               + +EE  Y LT  SKLL+   P                                 L
Sbjct: 81  GKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTL 140
Query: 76  SEYAGDESKLN-----------NFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVXXX 124
            E A  ES  +           + F +AMASD+R+   +++Q+ K VFEGL SLVDV   
Sbjct: 141 FECATGESFWDFLNKDSESSTLSMFQDAMASDSRMF-KLVLQENKRVFEGLESLVDVGGG 199
Query: 125 XXXXXXXXXXXFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILL 184
                      FP L+CT FD P VV  L  +  NL +VGGDMFK+I  A AVLLKW+L 
Sbjct: 200 TGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGN-ENLNFVGGDMFKSIPSADAVLLKWVLH 258
Query: 185 DWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTG 244
           DWNDE+ +KILK  KEAI+  GK  KVII D+  +    D    E QL +++ M+ +  G
Sbjct: 259 DWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLG 318
Query: 245 TERDEKEWAKIFADS 259
            ER ++EW K+  D+
Sbjct: 319 KERTKQEWEKLIYDA 333

>pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase Complexed With (+)-6a-hydroxymaackiain Length = 357

Iteration: 1
 Score =  176 bits (446), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 120/315 (38%), Positives = 159/315 (50%), Gaps = 58/315 (18%)
Query: 1   MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQC------------FFAQQKLV 48
           M LK A +LGI D I+ HGKPMTL+EL S+L ++ SK               FFA+  + 
Sbjct: 24  MALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNILHRFLRLLTHNGFFAKTIVK 83
Query: 49  SSGNNNDEEQGYVLTNASKLLLKDNP---------------------------------L 75
               + +EE  Y LT  SKLL+   P                                 L
Sbjct: 84  GKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTL 143
Query: 76  SEYAGDESKLN-----------NFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVXXX 124
            E A  ES  +           + F +AMASD+R+   +++Q+ K VFEGL SLVDV   
Sbjct: 144 FECATGESFWDFLNKDSESSTLSMFQDAMASDSRMF-KLVLQENKRVFEGLESLVDVGGG 202
Query: 125 XXXXXXXXXXXFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILL 184
                      FP L+CT FD P VV  L  +  NL +VGGDMFK+I  A AVLLKW+L 
Sbjct: 203 TGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGN-ENLNFVGGDMFKSIPSADAVLLKWVLH 261
Query: 185 DWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTG 244
           DWNDE+ +KILK  KEAI+  GK  KVII D+  +    D    E QL +++ M+ +  G
Sbjct: 262 DWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLG 321
Query: 245 TERDEKEWAKIFADS 259
            ER ++EW K+  D+
Sbjct: 322 KERTKQEWEKLIYDA 336

>pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone 4'-O-Methyltransferase Complexed With Sah And 2,7,4'-Trihydroxyisoflavanone Length = 358

Iteration: 1
 Score =  176 bits (446), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 120/315 (38%), Positives = 159/315 (50%), Gaps = 58/315 (18%)
Query: 1   MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQC------------FFAQQKLV 48
           M LK A +LGI D I+ HGKPMTL+EL S+L ++ SK               FFA+  + 
Sbjct: 25  MALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNILHRFLRLLTHNGFFAKTIVK 84
Query: 49  SSGNNNDEEQGYVLTNASKLLLKDNP---------------------------------L 75
               + +EE  Y LT  SKLL+   P                                 L
Sbjct: 85  GKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTL 144
Query: 76  SEYAGDESKLN-----------NFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVXXX 124
            E A  ES  +           + F +AMASD+R+   +++Q+ K VFEGL SLVDV   
Sbjct: 145 FECATGESFWDFLNKDSESSTLSMFQDAMASDSRMF-KLVLQENKRVFEGLESLVDVGGG 203
Query: 125 XXXXXXXXXXXFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILL 184
                      FP L+CT FD P VV  L  +  NL +VGGDMFK+I  A AVLLKW+L 
Sbjct: 204 TGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGN-ENLNFVGGDMFKSIPSADAVLLKWVLH 262
Query: 185 DWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTG 244
           DWNDE+ +KILK  KEAI+  GK  KVII D+  +    D    E QL +++ M+ +  G
Sbjct: 263 DWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLG 322
Query: 245 TERDEKEWAKIFADS 259
            ER ++EW K+  D+
Sbjct: 323 KERTKQEWEKLIYDA 337

>pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone O-Methyltransferase Length = 352

Iteration: 1
 Score =  172 bits (437), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 111/304 (36%), Positives = 163/304 (53%), Gaps = 48/304 (15%)
Query: 1   MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNN----NDE 56
           M+LK A ++ IP+II  HGKP++L+ LVS L +  SK        + ++          E
Sbjct: 31  MSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLMRYLAHNGFFEIITKE 90
Query: 57  EQGYVLTNASKLLLKDN-----PLSEYAGDES---------------------------- 83
           E+ Y LT AS+LL++ +     P+ E   D +                            
Sbjct: 91  EESYALTVASELLVRGSDLCLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGF 150
Query: 84  --------KLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVXXXXXXXXXXXXXX 135
                   + N  FN+AMASD++L  ++ ++ C  VF+GL S+VDV              
Sbjct: 151 WDFLDKNPEYNTSFNDAMASDSKL-INLALRDCDFVFDGLESIVDVGGGTGTTAKIICET 209
Query: 136 FPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDEECVKIL 195
           FPKL+C  FD P VV  L S   NL YVGGDMF +I  A AVLLK+IL +W D++C++IL
Sbjct: 210 FPKLKCIVFDRPQVVENL-SGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRIL 268
Query: 196 KKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAKI 255
           KKCKEA+T DGK+ KV I DM+ + +K + +  + +L  ++  M  L G ER+E+EW K+
Sbjct: 269 KKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDV-NMACLNGKERNEEEWKKL 327
Query: 256 FADS 259
           F ++
Sbjct: 328 FIEA 331

>pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase Homolog In Complex With Biochanin A And Sah Length = 357

Iteration: 1
 Score =  171 bits (433), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 108/309 (34%), Positives = 161/309 (52%), Gaps = 53/309 (17%)
Query: 1   MTLKCAFQLGIPDIINKHGKPMTLNELVSALTI------NLSKTQCFFAQQ---KLVSSG 51
           M+LK + ++ IP+II+ HGKP+TL+ LVS L I      N+ +   + A     +++++ 
Sbjct: 31  MSLKWSIEMNIPNIIHNHGKPITLSNLVSILQIPSTKVDNVQRLMRYLAHNGFFEIITNQ 90
Query: 52  NNNDEEQGYVLTNASKLLLKDNPLS----------------------------------- 76
              +EE+ Y LT AS+LL+K   L                                    
Sbjct: 91  ELENEEEAYALTVASELLVKGTELCLAPMVECVLDPTLSTSFHNLKKWVYEEDLTLFAVN 150
Query: 77  ------EYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVXXXXXXXXX 130
                 E+     + N  +N+A+ASD+++    M + C  VFEGL S+VDV         
Sbjct: 151 LGCDLWEFLNKNPEYNTLYNDALASDSKMINLAM-KDCNLVFEGLESIVDVGGGNGTTGK 209
Query: 131 XXXXXFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDEE 190
                FPKL C  FD P VV  L     NL YVGGDMF ++  A AVLLK +L DW D++
Sbjct: 210 IICETFPKLTCVVFDRPKVVENLCGS-NNLTYVGGDMFISVPKADAVLLKAVLHDWTDKD 268
Query: 191 CVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEK 250
           C+KILKKCKEA+T DGK+ KVI+ DM+   +K + +  + +L   +  +  + G ER+E+
Sbjct: 269 CIKILKKCKEAVTSDGKRGKVIVIDMVINEKKDENQLTQIKLLMNV-TISCVNGKERNEE 327
Query: 251 EWAKIFADS 259
           EW K+F ++
Sbjct: 328 EWKKLFIEA 336

>pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Isoflavone O-Methyltransferase Length = 352

Iteration: 1
 Score =  158 bits (399), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 104/303 (34%), Positives = 155/303 (51%), Gaps = 48/303 (15%)
Query: 2   TLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNN----NDEE 57
           +LK A +  IP+II  HGKP++L+ LVS L +  SK        + ++          EE
Sbjct: 32  SLKWAVEXNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLXRYLAHNGFFEIITKEE 91
Query: 58  QGYVLTNASKLLLKDNPLS----------------------------------------- 76
           + Y LT AS+LL++ + L                                          
Sbjct: 92  ESYALTVASELLVRGSDLCLAPXVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFW 151
Query: 77  EYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVXXXXXXXXXXXXXXF 136
           ++     + N  FN+A ASD++L  ++ ++ C  VF+GL S+VDV              F
Sbjct: 152 DFLDKNPEYNTSFNDAXASDSKL-INLALRDCDFVFDGLESIVDVGGGTGTTAKIICETF 210
Query: 137 PKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDEECVKILK 196
           PKL+C  FD P VV  L S   NL YVGGD F +I  A AVLLK+IL +W D++C++ILK
Sbjct: 211 PKLKCIVFDRPQVVENL-SGSNNLTYVGGDXFTSIPNADAVLLKYILHNWTDKDCLRILK 269
Query: 197 KCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAKIF 256
           KCKEA+T DGK+ KV I D + + +K + +  + +L  ++     L G ER+E+EW K+F
Sbjct: 270 KCKEAVTNDGKRGKVTIIDXVIDKKKDENQVTQIKLLXDV-NXACLNGKERNEEEWKKLF 328
Query: 257 ADS 259
            ++
Sbjct: 329 IEA 331

>pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To Sah Length = 364

Iteration: 1
 Score =  102 bits (254), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 95/179 (53%), Gaps = 10/179 (5%)
Query: 77  EYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVXXXXXXXXXXXXXXF 136
           EY G + + N  FNE M + + + T  +++   + FEGL +LVDV              +
Sbjct: 165 EYHGTDPRFNRVFNEGMKNHSIIITKKLLE-LYHGFEGLGTLVDVGGGVGATVAAIAAHY 223
Query: 137 PKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDEECVKILK 196
           P ++   FDLPHV++        + +VGGDMFK +     +L+KWIL DW+D+ C  +LK
Sbjct: 224 PTIKGVNFDLPHVIS-EAPQFPGVTHVGGDMFKEVPSGDTILMKWILHDWSDQHCATLLK 282
Query: 197 KCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLL---TGTERDEKEW 252
            C +A+   GK   V+++ ++  N + +  S   Q  F + M++L     G ER E+E+
Sbjct: 283 NCYDALPAHGK--VVLVQCILPVNPEANPSS---QGVFHVDMIMLAHNPGGRERYEREF 336

>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic Acid 35-O-Methyltransferase In Complex With 5- Hydroxyconiferaldehyde Length = 365

Iteration: 1
 Score =  102 bits (253), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 63/177 (35%), Positives = 90/177 (50%), Gaps = 6/177 (3%)
Query: 77  EYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVXXXXXXXXXXXXXXF 136
           EY G + + N  FN+ M SD    T   I +    FEGL SLVDV              +
Sbjct: 164 EYHGTDPRFNKVFNKGM-SDHSTITMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKY 222
Query: 137 PKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDEECVKILK 196
           P ++   FDLPHV+    S    +++VGGDMF +I  A AV +KWI  DW+DE C+K LK
Sbjct: 223 PTIKGINFDLPHVIEDAPS-YPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFLK 281
Query: 197 KCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVL-LTGTERDEKEW 252
            C EA+  +G   KVI+ + I         + +  +  ++ M+     G ER +KE+
Sbjct: 282 NCYEALPDNG---KVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEF 335

>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt) Length = 368

Iteration: 1
 Score =  100 bits (248), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 92/179 (51%), Gaps = 10/179 (5%)
Query: 77  EYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVXXXXXXXXXXXXXXF 136
           +Y G + ++N  FN+ M+S++ + T   I +  N FEGL ++VDV              +
Sbjct: 167 DYHGTDHRINKVFNKGMSSNSTI-TMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKY 225
Query: 137 PKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDEECVKILK 196
           P +    FDLPHV+    +    ++++GGDMF  +    A+ +KWI  DW+DE C+K+LK
Sbjct: 226 PSINAINFDLPHVIQDAPA-FSGVEHLGGDMFDGVPKGDAIFIKWICHDWSDEHCLKLLK 284
Query: 197 KCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLL---TGTERDEKEW 252
            C  A+   G   KVI+ + I         SI T++      ++L     G ER EKE+
Sbjct: 285 NCYAALPDHG---KVIVAEYILPPSPD--PSIATKVVIHTDALMLAYNPGGKERTEKEF 338

>pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase Length = 372

Iteration: 1
 Score = 89.4 bits (220), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 96/182 (52%), Gaps = 11/182 (6%)
Query: 77  EYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVXXXXXXXXXXXXXXF 136
           E+ G + K+N  FN++M          M++     FEG+++LVDV              +
Sbjct: 173 EFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTG-FEGISTLVDVGGGSGRNLELIISKY 231
Query: 137 PKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDEECVKILK 196
           P ++   FDLP V+      L  +++VGGDMF ++    A++LK +  +W+DE+C++ L 
Sbjct: 232 PLIKGINFDLPQVIEN-APPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLS 290
Query: 197 KCKEAITRDGKKRKVIIKDMI---KENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWA 253
            C +A++ +G   KVII + I   + N  ++ K + T    +  M + + G ER EK++ 
Sbjct: 291 NCHKALSPNG---KVIIVEFILPEEPNTSEESKLVST---LDNLMFITVGGRERTEKQYE 344
Query: 254 KI 255
           K+
Sbjct: 345 KL 346

>pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Chalcone O- Methyltransferase Length = 372

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 90/182 (49%), Gaps = 11/182 (6%)
Query: 77  EYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVXXXXXXXXXXXXXXF 136
           E+ G + K N  FN++   D          +    FEG+++LVDV              +
Sbjct: 173 EFXGKDKKXNQIFNKSXV-DVCATEXKRXLEIYTGFEGISTLVDVGGGSGRNLELIISKY 231
Query: 137 PKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDEECVKILK 196
           P ++   FDLP V+      L  +++VGGD F ++    A +LK +  +W+DE+C++ L 
Sbjct: 232 PLIKGINFDLPQVIEN-APPLSGIEHVGGDXFASVPQGDAXILKAVCHNWSDEKCIEFLS 290
Query: 197 KCKEAITRDGKKRKVIIKDMI---KENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWA 253
            C +A++ +G   KVII + I   + N  ++ K + T    +    + + G ER EK++ 
Sbjct: 291 NCHKALSPNG---KVIIVEFILPEEPNTSEESKLVST---LDNLXFITVGGRERTEKQYE 344
Query: 254 KI 255
           K+
Sbjct: 345 KL 346

>pdb|1TW2|A Chain A, Crystal Structure Of Carminomycin-4-O-Methyltransferase (Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah) And 4-Methoxy-E-Rhodomycin T (M-Et) Length = 360

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 61/108 (56%), Gaps = 13/108 (12%)
Query: 155 SDLVNLKYVGGDMFKAIS-PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVII 213
           SD V++  V GD F+ +   A A++L ++LL+W D + V+IL +C EA+   G   +++I
Sbjct: 232 SDRVDV--VEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGG---RILI 286
Query: 214 --KDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAKIFADS 259
             +D + EN    +    T+L  ++ M+V L G  R  ++W  + A +
Sbjct: 287 HERDDLHEN---SFNEQFTEL--DLRMLVFLGGALRTREKWDGLAASA 329

>pdb|3GWZ|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr Length = 369

Iteration: 1
 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 81/186 (43%), Gaps = 17/186 (9%)
Query: 81  DESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVXXXXXXXXXXXXXXFPKLE 140
           ++ K    FN A  S   L  +  +    + F G  + VD+              FP L 
Sbjct: 171 EDPKARELFNRAXGS-VSLTEAGQVAAAYD-FSGAATAVDIGGGRGSLXAAVLDAFPGLR 228
Query: 141 CTCFDLPHVVNGLESDLVNL------KYVGGDMFKAISPAYAV-LLKWILLDWNDEECVK 193
            T  + P V       L         + + GD F+ I     V L+K +L DW+D++ V+
Sbjct: 229 GTLLERPPVAEEARELLTGRGLADRCEILPGDFFETIPDGADVYLIKHVLHDWDDDDVVR 288
Query: 194 ILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWA 253
           IL++   A   D   R ++I ++I      D +   + LF ++ ++VL+ G ER E E+A
Sbjct: 289 ILRRIATAXKPD--SRLLVIDNLI------DERPAASTLFVDLLLLVLVGGAERSESEFA 340
Query: 254 KIFADS 259
            +   S
Sbjct: 341 ALLEKS 346

>pdb|1X19|A Chain A, Crystal Structure Of Bchu Involved In Bacteriochlorophyll C Biosynthesis Length = 359

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 72/157 (45%), Gaps = 25/157 (15%)
Query: 86  NNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVXXXXXXXXXXXXXXFPKLECTCFD 145
           N +F E   S+A+ A  +++++ K   +G+  ++DV              FP+L+ T  +
Sbjct: 164 NLYFEEIHRSNAKFAIQLLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILN 221
Query: 146 LPHVVNGLESDLVN-----------LKYVGGDMFKAISP-AYAVLLKWILLDWNDEECVK 193
           LP  +     DLVN           ++ +  D++K   P A AVL   IL   N++    
Sbjct: 222 LPGAI-----DLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTI 276
Query: 194 ILKKCKEAITRDGKKRKVIIKDMI---KENRKKDYKS 227
           + KK  +A+   G   +++I DM+    EN   DY S
Sbjct: 277 MCKKAFDAMRSGG---RLLILDMVIDDPENPNFDYLS 310

>pdb|3LST|A Chain A, Crystal Structure Of Calo1, Methyltransferase In Calicheamicin Biosynthesis, Sah Bound Form Length = 348

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 57/149 (38%), Gaps = 11/149 (7%)
Query: 112 FEGLNSLVDVXXXXXXXXXXXXXXFPKLECTCFDLPHVVNGLESDLVNL----KYVGGDM 167
           F    ++ DV               P L+    D   VV     D  ++    K V GD 
Sbjct: 182 FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDF 241
Query: 168 FKAISPAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKS 227
            + +  A   +LK IL +W DE+ V+IL  C+      G   +V++ D +       ++S
Sbjct: 242 LREVPHADVHVLKRILHNWGDEDSVRILTNCRRVXPAHG---RVLVIDAVVPEGNDAHQS 298
Query: 228 IETQLFFEMFMMVLLTGTERDEKEWAKIF 256
            E     +   +   TG ER   E   +F
Sbjct: 299 KEX----DFXXLAARTGQERTAAELEPLF 323

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	259
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	1e-90
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	2e-89
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	5e-88
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	8e-87
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	8e-87
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	5e-86
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	1e-85
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	1e-84
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	4e-83
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	8e-83
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	3e-82
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	6e-80
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	5e-64
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	3e-63
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	4e-61
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	2e-04

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* Length = 358

 Score =  271 bits (694), Expect = 1e-90
 Identities = 123/315 (39%), Positives = 164/315 (52%), Gaps = 58/315 (18%)

Query: 1   MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQC------------FFAQQKLV 48
           M LK A +LGI D I+ HGKPMTL+EL S+L ++ SK               FFA+  + 
Sbjct: 25  MALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNILHRFLRLLTHNGFFAKTIVK 84

Query: 49  SSGNNNDEEQGYVLTNASKLLLKDNPLS-------------------------------- 76
               + +EE  Y LT  SKLL+   P                                  
Sbjct: 85  GKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTL 144

Query: 77  ----------EYAGDESKLNNF--FNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGG 124
                     ++   +S+ +    F +AMASD+R+   V+ +  K VFEGL SLVDVGGG
Sbjct: 145 FECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQE-NKRVFEGLESLVDVGGG 203

Query: 125 TGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILL 184
           TG   K I + FP L+CT FD P VV  L  +  NL +VGGDMFK+I  A AVLLKW+L 
Sbjct: 204 TGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGN-ENLNFVGGDMFKSIPSADAVLLKWVLH 262

Query: 185 DWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTG 244
           DWNDE+ +KILK  KEAI+  GK  KVII D+  +    D    E QL +++ M+ +  G
Sbjct: 263 DWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLG 322

Query: 245 TERDEKEWAKIFADS 259
            ER ++EW K+  D+
Sbjct: 323 KERTKQEWEKLIYDA 337

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* Length = 352

 Score =  268 bits (686), Expect = 2e-89
 Identities = 119/304 (39%), Positives = 168/304 (55%), Gaps = 48/304 (15%)

Query: 1   MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFF-AQQKLVSSGNN---NDE 56
           M+LK A ++ IP+II  HGKP++L+ LVS L +  SK        + L  +G       E
Sbjct: 31  MSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLMRYLAHNGFFEIITKE 90

Query: 57  EQGYVLTNASKLLLKDNPLS---------------------------------------- 76
           E+ Y LT AS+LL++ + L                                         
Sbjct: 91  EESYALTVASELLVRGSDLCLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGF 150

Query: 77  -EYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKA 135
            ++     + N  FN+AMASD++L    +   C  VF+GL S+VDVGGGTGT AK I + 
Sbjct: 151 WDFLDKNPEYNTSFNDAMASDSKLINLALRD-CDFVFDGLESIVDVGGGTGTTAKIICET 209

Query: 136 FPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDEECVKIL 195
           FPKL+C  FD P VV  L     NL YVGGDMF +I  A AVLLK+IL +W D++C++IL
Sbjct: 210 FPKLKCIVFDRPQVVENLSGS-NNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRIL 268

Query: 196 KKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAKI 255
           KKCKEA+T DGK+ KV I DM+ + +K + +  + +L  ++ M   L G ER+E+EW K+
Sbjct: 269 KKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMAC-LNGKERNEEEWKKL 327

Query: 256 FADS 259
           F ++
Sbjct: 328 FIEA 331

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Length = 348

 Score =  264 bits (676), Expect = 5e-88
 Identities = 57/303 (18%), Positives = 103/303 (33%), Gaps = 57/303 (18%)

Query: 1   MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGY 60
             L+ A  +G+ D +     P T  EL +A   +    +     + L       + +  +
Sbjct: 37  AALRAAAAVGVADHL--VDGPRTPAELAAATGTDADALRRVL--RLLAVRDVVRESDGRF 92

Query: 61  VLTNASKLLLKDNPLS----------------------------------------EYAG 80
            LT+    L  D+P+                                          Y  
Sbjct: 93  ALTDKGAALRSDSPVPARAGILMFTDTMFWTMSHRVASALGPERPAFADIFGSSLDAYFD 152

Query: 81  DESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLE 140
            ++++   + E M + +     ++ +     F    ++ DVGGG G     + +  P L+
Sbjct: 153 GDAEVEALYYEGMETVSAAEHLILARAG--DFPATGTVADVGGGRGGFLLTVLREHPGLQ 210

Query: 141 CTCFDLPHVVNGLESDLV----NLKYVGGDMFKAISPAYAVLLKWILLDWNDEECVKILK 196
               D   VV     D        K V GD  + +  A   +LK IL +W DE+ V+IL 
Sbjct: 211 GVLLDRAEVVARHRLDAPDVAGRWKVVEGDFLREVPHADVHVLKRILHNWGDEDSVRILT 270

Query: 197 KCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAKIF 256
            C+  +   G   +V++ D +      +          +  M+   TG ER   E   +F
Sbjct: 271 NCRRVMPAHG---RVLVIDAVVP----EGNDAHQSKEMDFMMLAARTGQERTAAELEPLF 323

Query: 257 ADS 259
             +
Sbjct: 324 TAA 326

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Length = 360

 Score =  261 bits (669), Expect = 8e-87
 Identities = 64/308 (20%), Positives = 112/308 (36%), Gaps = 61/308 (19%)

Query: 1   MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGN-NNDEEQG 59
           M ++ A  L + D I       T+  L +               + LV+ G    D    
Sbjct: 34  MVVRTAATLRLVDHI--LAGARTVKALAARTDTRPEALLRLI--RHLVAIGLLEEDAPGE 89

Query: 60  YVLTNASKLLLKDNPLS-----------------------------------------EY 78
           +V T   +LL  D+P +                                         E 
Sbjct: 90  FVPTEVGELLADDHPAAQRAWHDLTQAVARADISFTRLPDAIRTGRPTYESIYGKPFYED 149

Query: 79  AGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPK 138
                 L   F+  +A D  +A           +  +  ++DVGGG G  A AIA+  P 
Sbjct: 150 LAGRPDLRASFDSLLACDQDVAFDAPAAAYD--WTNVRHVLDVGGGKGGFAAAIARRAPH 207

Query: 139 LECTCFDLPHVVNGLESDLV------NLKYVGGDMFKAISPAY-AVLLKWILLDWNDEEC 191
           +  T  ++   V+   S L        +  V GD F+ +     A++L ++LL+W D + 
Sbjct: 208 VSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDA 267

Query: 192 VKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKE 251
           V+IL +C EA+   G   +++I +    +   +    E     ++ M+V L G  R  ++
Sbjct: 268 VRILTRCAEALEPGG---RILIHERDDLH---ENSFNEQFTELDLRMLVFLGGALRTREK 321

Query: 252 WAKIFADS 259
           W  + A +
Sbjct: 322 WDGLAASA 329

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Length = 369

 Score =  261 bits (670), Expect = 8e-87
 Identities = 65/308 (21%), Positives = 116/308 (37%), Gaps = 63/308 (20%)

Query: 1   MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSG--NNNDEEQ 58
             +  A +LG+P+++     P T   L  A   +    +     + L + G  ++   + 
Sbjct: 53  RAIHVAVELGVPELL--QEGPRTATALAEATGAHEQTLRRLL--RLLATVGVFDDLGHDD 108

Query: 59  GYVLTNASKLLLKDNPLS----------------------------------------EY 78
            +     S +LL D                                            + 
Sbjct: 109 LFAQNALSAVLLPDPASPVATDARFQAAPWHWRAWEQLTHSVRTGEASFDVANGTSFWQL 168

Query: 79  AGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPK 138
             ++ K    FN AM S +      +       F G  + VD+GGG G+   A+  AFP 
Sbjct: 169 THEDPKARELFNRAMGSVSLTEAGQVAAAY--DFSGAATAVDIGGGRGSLMAAVLDAFPG 226

Query: 139 LECTCFDLPHVVNGLESDLV------NLKYVGGDMFKAISPAY-AVLLKWILLDWNDEEC 191
           L  T  + P V       L         + + GD F+ I       L+K +L DW+D++ 
Sbjct: 227 LRGTLLERPPVAEEARELLTGRGLADRCEILPGDFFETIPDGADVYLIKHVLHDWDDDDV 286

Query: 192 VKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKE 251
           V+IL++   A+  D    ++++ D + + R        + LF ++ ++VL+ G ER E E
Sbjct: 287 VRILRRIATAMKPDS---RLLVIDNLIDERPA-----ASTLFVDLLLLVLVGGAERSESE 338

Query: 252 WAKIFADS 259
           +A +   S
Sbjct: 339 FAALLEKS 346

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Length = 374

 Score =  260 bits (665), Expect = 5e-86
 Identities = 56/310 (18%), Positives = 94/310 (30%), Gaps = 62/310 (20%)

Query: 1   MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSG---NNNDEE 57
           M L+ A  L + D +       TL  L      +          + L   G       + 
Sbjct: 31  MALRVAATLRLVDHL--LAGADTLAGLADRTDTHPQALSRLV--RHLTVVGVLEGGEKQG 86

Query: 58  QGYVLTNASKLLLKDNPLS----------------------------------------- 76
           +    T    LL   +P                                           
Sbjct: 87  RPLRPTRLGMLLADGHPAQQRAWLDLNGAVSHADLAFTGLLDVVRTGRPAYAGRYGRPFW 146

Query: 77  EYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAF 136
           E    +  L + F+  M+ D  LA           +  +  ++DVGGG G    AIA   
Sbjct: 147 EDLSADVALADSFDALMSCDEDLAYEAPADAYD--WSAVRHVLDVGGGNGGMLAAIALRA 204

Query: 137 PKLECTCFDLPHVVNGLESDLV------NLKYVGGDMFKAISPAY-AVLLKWILLDWNDE 189
           P L  T  +L                   +    GD FK +      VLL ++LL+W+DE
Sbjct: 205 PHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLNWSDE 264

Query: 190 ECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDE 249
           + + IL+ C  A+   G   ++++ D          +        ++ M+  + G  R  
Sbjct: 265 DALTILRGCVRALEPGG---RLLVLDRADVEGDGADR--FFSTLLDLRMLTFMGGRVRTR 319

Query: 250 KEWAKIFADS 259
            E   +   +
Sbjct: 320 DEVVDLAGSA 329

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Length = 332

 Score =  257 bits (659), Expect = 1e-85
 Identities = 62/308 (20%), Positives = 103/308 (33%), Gaps = 65/308 (21%)

Query: 1   MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGN-NNDEEQG 59
           M ++ A  L + D I       T  E+ SA   +          + LV+ G    D +  
Sbjct: 20  MAVRVAATLRVADHI--AAGHRTAAEIASAAGAHADSLDRLL--RHLVAVGLFTRDGQGV 75

Query: 60  YVLTNASKLLLKDNPLS-----------------------------------------EY 78
           Y LT   + L  D+                                            E 
Sbjct: 76  YGLTEFGEQLRDDHAAGKRKWLDMNSAVGRGDLGFVELAHSIRTGQPAYPVRYGTSFWED 135

Query: 79  AGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPK 138
            G +  L+  F+  M+    L  + +  K    +  L  +VDVGGG+G    A+  A   
Sbjct: 136 LGSDPVLSASFDTLMSHHLELDYTGIAAKYD--WAALGHVVDVGGGSGGLLSALLTAHED 193

Query: 139 LECTCFDLPHVVNGLESDLV------NLKYVGGDMFKAI-SPAYAVLLKWILLDWNDEEC 191
           L  T  DL    +      +        + V G  F  + + A   +L  +L DW+D   
Sbjct: 194 LSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDPLPAGAGGYVLSAVLHDWDDLSA 253

Query: 192 VKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKE 251
           V IL++C EA    G    V++ + +  +              ++ M+    G ER   E
Sbjct: 254 VAILRRCAEAAGSGG---VVLVIEAVAGDEH-------AGTGMDLRMLTYFGGKERSLAE 303

Query: 252 WAKIFADS 259
             ++ A +
Sbjct: 304 LGELAAQA 311

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Length = 372

 Score =  256 bits (655), Expect = 1e-84
 Identities = 73/319 (22%), Positives = 127/319 (39%), Gaps = 67/319 (21%)

Query: 1   MTLKCAFQLGIPDIINKHGKP---MTLNELVSALTINLSKTQC---------------FF 42
             L  A  L + +II K   P   M+ +E+ S L  +   +                   
Sbjct: 39  AVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVL 98

Query: 43  AQQKLVSSGNNNDEEQGYVLTNASKLLLKDNPLS-------------------------- 76
                  +  +   E+ Y L+   K L+ D                              
Sbjct: 99  TSTT--RTIEDGGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVV 156

Query: 77  ----------------EYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVD 120
                           E+ G + K+N  FN++M          M+ +    FEG+++LVD
Sbjct: 157 DEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRML-EIYTGFEGISTLVD 215

Query: 121 VGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLK 180
           VGGG+G   + I   +P ++   FDLP V+         +++VGGDMF ++    A++LK
Sbjct: 216 VGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLS-GIEHVGGDMFASVPQGDAMILK 274

Query: 181 WILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMV 240
            +  +W+DE+C++ L  C +A++ +G   KVII + I        +  +     +  M +
Sbjct: 275 AVCHNWSDEKCIEFLSNCHKALSPNG---KVIIVEFILPEEPNTSEESKLVSTLDNLMFI 331

Query: 241 LLTGTERDEKEWAKIFADS 259
            + G ER EK++ K+   S
Sbjct: 332 TVGGRERTEKQYEKLSKLS 350

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 1kyz_A* 1kyw_A* Length = 368

 Score =  252 bits (645), Expect = 4e-83
 Identities = 78/315 (24%), Positives = 130/315 (41%), Gaps = 61/315 (19%)

Query: 1   MTLKCAFQLGIPDIINKHGKP---MTLNELVSALTINLSKTQCFFAQ--QKLVSSG---- 51
           M LK A +L + +I+ K   P   ++  E+ + L     +      +  + L S      
Sbjct: 36  MALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVVTY 95

Query: 52  -----NNNDEEQGYVLTNASKLLLKDNPLS------------------------------ 76
                 +   E+ Y L    K L K+                                  
Sbjct: 96  TLRELPSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGGI 155

Query: 77  -----------EYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGT 125
                      +Y G + ++N  FN+ M+S++ +    +++     FEGL ++VDVGGGT
Sbjct: 156 PFNKAYGMNIFDYHGTDHRINKVFNKGMSSNSTITMKKILEMYN-GFEGLTTIVDVGGGT 214

Query: 126 GTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLD 185
           G  A  I   +P +    FDLPHV+    +    ++++GGDMF  +    A+ +KWI  D
Sbjct: 215 GAVASMIVAKYPSINAINFDLPHVIQDAPAFS-GVEHLGGDMFDGVPKGDAIFIKWICHD 273

Query: 186 WNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLT-G 244
           W+DE C+K+LK C  A+   G   KVI+ + I         + +  +  +  M+     G
Sbjct: 274 WSDEHCLKLLKNCYAALPDHG---KVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGG 330

Query: 245 TERDEKEWAKIFADS 259
            ER EKE+  +   S
Sbjct: 331 KERTEKEFQALAMAS 345

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Length = 359

 Score =  251 bits (642), Expect = 8e-83
 Identities = 53/303 (17%), Positives = 110/303 (36%), Gaps = 54/303 (17%)

Query: 1   MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGY 60
             +K A +L +   +     P  L  L +       + +       L      N E+  +
Sbjct: 46  SCMKAAIELDLFSHM--AEGPKDLATLAADTGSVPPRLEMLLET--LRQMRVINLEDGKW 101

Query: 61  VLTNASKLLLKDNPLS-------------------------------------EYAGDES 83
            LT  +  +    P                                        Y     
Sbjct: 102 SLTEFADYMFSPTPKEPNLHQTPVAKAMAFLADDFYMGLSQAVRGQKNFKGQVPYPPVTR 161

Query: 84  KLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTC 143
           + N +F E   S+A+ A  +++++ K   +G+  ++DVGGG G  + A+ K FP+L+ T 
Sbjct: 162 EDNLYFEEIHRSNAKFAIQLLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHFPELDSTI 219

Query: 144 FDLPHVVNGLESDLV------NLKYVGGDMFK-AISPAYAVLLKWILLDWNDEECVKILK 196
            +LP  ++ +  +         ++ +  D++K +   A AVL   IL   N++    + K
Sbjct: 220 LNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCK 279

Query: 197 KCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAKIF 256
           K  +A+   G   +++I DM+ ++ +       +       M        +++  + +I 
Sbjct: 280 KAFDAMRSGG---RLLILDMVIDDPENPNFDYLSHYILGAGMPF-SVLGFKEQARYKEIL 335

Query: 257 ADS 259
              
Sbjct: 336 ESL 338

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Length = 364

 Score =  250 bits (639), Expect = 3e-82
 Identities = 82/314 (26%), Positives = 129/314 (41%), Gaps = 60/314 (19%)

Query: 1   MTLKCAFQLGIPDIINK-HGKPMTLNELVSALTINLSKTQCFFAQQKL------------ 47
           MTLK A +LG+ +I+    GK +T  E+ + L    +        + L            
Sbjct: 35  MTLKNAIELGLLEILVAAGGKSLTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVVTCL 94

Query: 48  VSSGNNNDEEQGYVLTNASKLLLKDNPLS------------------------------- 76
           V  G +    + Y      K L  +                                   
Sbjct: 95  VEEGKDGRLSRSYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGGIP 154

Query: 77  ----------EYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTG 126
                     EY G + + N  FNE M + + + T  ++ +  + FEGL +LVDVGGG G
Sbjct: 155 FNKAYGMSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLL-ELYHGFEGLGTLVDVGGGVG 213

Query: 127 TAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDW 186
               AIA  +P ++   FDLPHV++        + +VGGDMFK +     +L+KWIL DW
Sbjct: 214 ATVAAIAAHYPTIKGVNFDLPHVISEAPQFP-GVTHVGGDMFKEVPSGDTILMKWILHDW 272

Query: 187 NDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLT-GT 245
           +D+ C  +LK C +A+   G   KV++   I     +   S +     +M M+     G 
Sbjct: 273 SDQHCATLLKNCYDALPAHG---KVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGR 329

Query: 246 ERDEKEWAKIFADS 259
           ER E+E+  +   +
Sbjct: 330 ERYEREFQALARGA 343

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Length = 334

 Score =  242 bits (621), Expect = 6e-80
 Identities = 56/308 (18%), Positives = 99/308 (32%), Gaps = 67/308 (21%)

Query: 1   MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQ---CFFAQQKLVSSGNNNDEE 57
             +  A +LG+ D+I       +   L +A+  +  +           ++       D  
Sbjct: 23  RCVYVATRLGLADLI--ESGIDSDETLAAAVGSDAERIHRLMRLLVAFEIFQG----DTR 76

Query: 58  QGYVLTNASKLLLKDNPLS---------------------------------------EY 78
            GY  T  S LL +D   S                                        Y
Sbjct: 77  DGYANTPTSHLL-RDVEGSFRDMVLFYGEEFHAAWTPACEALLSGTPGFELAFGEDFYSY 135

Query: 79  AGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPK 138
                     F  AM +       +  +     F G  S VDVGGG+G   KAI +A P 
Sbjct: 136 LKRCPDAGRRFLLAMKASNLAFHEI-PRLLD--FRG-RSFVDVGGGSGELTKAILQAEPS 191

Query: 139 LECTCFDLPHVVNGLESDLV------NLKYVGGDMFKAISPAY-AVLLKWILLDWNDEEC 191
                 D    +     +L        +  VGGDM + +       LL  I+ D ++   
Sbjct: 192 ARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQEVPSNGDIYLLSRIIGDLDEAAS 251

Query: 192 VKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKE 251
           +++L  C+EA+  DG   +V++ +          +     + +++ + +   G  R  +E
Sbjct: 252 LRLLGNCREAMAGDG---RVVVIERTIS----ASEPSPMSVLWDVHLFMACAGRHRTTEE 304

Query: 252 WAKIFADS 259
              +    
Sbjct: 305 VVDLLGRG 312

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Length = 363

 Score =  202 bits (517), Expect = 5e-64
 Identities = 48/310 (15%), Positives = 96/310 (30%), Gaps = 58/310 (18%)

Query: 1   MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGY 60
              +   + GI  +++   +  TL E+     +     Q        ++ G    EE  Y
Sbjct: 30  QVSRLMLKFGIFQLLSGKREGYTLQEISGRTGLTRYAAQVLLEA--SLTIGTILLEEDRY 87

Query: 61  VLTNASKLLLKDNP------------------LSE----------------------YAG 80
           VL  A   LL D                    L E                       + 
Sbjct: 88  VLAKAGWFLLNDKMARVNMEFNHDVNYQGLFHLEEALLNGRPEGLKVFGEWPTIYEGLSQ 147

Query: 81  DESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLE 140
              ++   +       +  +    ++           L+D+GG TG  A    +   ++E
Sbjct: 148 LPEQVQKSWFGFDHFYSDQSFGKALEIVF--SHHPKRLLDIGGNTGKWATQCVQYNKEVE 205

Query: 141 CTCFDLPHVVNGLESDLV------NLKYVGGDMFKAISP----AYAVLLKWILLDWNDEE 190
            T  DLP  +  +            +   G ++     P      AV +   L  +++EE
Sbjct: 206 VTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMSQFLDCFSEEE 265

Query: 191 CVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKS-IETQLFFEMFMMVLLTGTERDE 249
            + IL +  ++I +D    KV I + + + ++ +  S   TQ+      M          
Sbjct: 266 VISILTRVAQSIGKDS---KVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHS 322

Query: 250 KEWAKIFADS 259
            +  +   ++
Sbjct: 323 DDLIRCIENA 332

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Length = 335

 Score =  200 bits (511), Expect = 3e-63
 Identities = 50/303 (16%), Positives = 94/303 (31%), Gaps = 54/303 (17%)

Query: 1   MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGY 60
             +K A +L +   I       +   L      +    +       LV  G    + +GY
Sbjct: 21  AAIKAAVELNVFTAI--SQGIESSQSLAQKCQTSERGMRMLC--DYLVIIGFMTKQAEGY 76

Query: 61  VLTNASKLLL-KDNPLS----------------------------------EYAGDESKL 85
            LT+ S + L + +                                          E  +
Sbjct: 77  RLTSDSAMFLDRQSKFYVGDAIEFLLSPMITNGFNDLTAAVLKGGTAISSEGTLSPEHPV 136

Query: 86  NNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFD 145
              F +AM+        ++ Q           ++D+    G    A+A+  P  E    D
Sbjct: 137 WVQFAKAMSPMMANPAQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVD 196

Query: 146 LPHVVNGLESDLV------NLKYVGGDMFKAISPAYA--VLLKWILLDWNDEECVKILKK 197
              V+   + +            + G  F+         VLL   L  ++   C ++L+K
Sbjct: 197 WASVLEVAKENARIQGVASRYHTIAGSAFEVDYGNDYDLVLLPNFLHHFDVATCEQLLRK 256

Query: 198 CKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLL-TGTERDEKEWAKIF 256
            K A+  +G   KVI+ D I  +   D  +      F + M+     G      E+  +F
Sbjct: 257 IKTALAVEG---KVIVFDFIPNS---DRITPPDAAAFSLVMLATTPNGDAYTFAEYESMF 310

Query: 257 ADS 259
           +++
Sbjct: 311 SNA 313

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Length = 352

 Score =  195 bits (497), Expect = 4e-61
 Identities = 44/304 (14%), Positives = 93/304 (30%), Gaps = 58/304 (19%)

Query: 1   MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGY 60
             L  A    + D+        T  E+ ++  +   K         L + G    E   +
Sbjct: 39  AILHYAVADKLFDLT---QTGRTPAEVAASFGMVEGKAAILL--HALAALGLLTKEGDAF 93

Query: 61  VLTN-ASKLLLKDNPLS---------------------------------EYAGDESKLN 86
             T    + L   +                                         +++  
Sbjct: 94  RNTALTERYLTTTSADYIGPIVEHQYLQWDNWPRLGEILRSEKPLAFQQESRFAHDTRAR 153

Query: 87  NFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL 146
           + FN+AM   ++    V+ +    VF    +++D+ GG GT    + +  P+L    +DL
Sbjct: 154 DAFNDAMVRLSQPMVDVVSELG--VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL 211

Query: 147 PHVVNGLESDLV------NLKYVGGDMFKAISPAY----AVLLKWILLDWNDEECVKILK 196
           P   +     +        +++   ++  A +        V+L   L  ++  E  +++ 
Sbjct: 212 PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIG 271

Query: 197 KCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLT-GTERDEKEWAKI 255
                +   G    ++I  M   +   D  +      F + MMV    G        A +
Sbjct: 272 HAAGLVKPGG---ALLILTMTMND---DRVTPALSADFSLHMMVNTNHGELHPTPWIAGV 325

Query: 256 FADS 259
             D+
Sbjct: 326 VRDA 329

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.7 bits (128), Expect = 2e-08
 Identities = 51/291 (17%), Positives = 88/291 (30%), Gaps = 100/291 (34%)

Query: 19  GKPMTLNELVSALTINL---SKTQCFFAQQKL-VSSGNNNDEEQGYVLTNASKLLLKDNP 74
           GK        + + +++    K QC    +   ++  N N  E   VL    KLL + +P
Sbjct: 162 GK--------TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET--VLEMLQKLLYQIDP 211

Query: 75  LSEYAGD------------ESKLNNFFNEAM----------ASDARLATSVMIQKCK--- 109
                 D            +++L                    +A+   +  +  CK   
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS-CKILL 270

Query: 110 -----NVFEGLN-------SLVDVGGG-TGTAAKAI-AKAFPKLECTCFDLPHVV---NG 152
                 V + L+       SL       T    K++  K    L+C   DLP  V   N 
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY---LDCRPQDLPREVLTTNP 327

Query: 153 LESDLV------------NLKYVGGDMFKAI--------SPA-----Y---AVLLK--WI 182
               ++            N K+V  D    I         PA     +   +V      I
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387

Query: 183 ---LLD--WND---EECVKILKKC--KEAITRDGKKRKVIIKDMIKENRKK 223
              LL   W D    + + ++ K      + +  K+  + I  +  E + K
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK 438

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254

 Score = 40.8 bits (95), Expect = 2e-04
 Identities = 21/132 (15%), Positives = 43/132 (32%), Gaps = 12/132 (9%)

Query: 94  ASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNG 152
             D  +  S              +L D G G G   K +            +   H++  
Sbjct: 74  VHDVDIEGSRNFIASLPGHGTSRAL-DCGAGIGRITKNLLTKLYA-TTDLLEPVKHMLEE 131

Query: 153 LESDLVNLK---YVGGDMFKAISPAY---AVLLKWILLDWNDEECVKILKKCKEAITRDG 206
            + +L  +    ++   M  A  P      ++++W  +   D + VK  K C++A+    
Sbjct: 132 AKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQAL-TPN 190

Query: 207 KKRKVIIKDMIK 218
               +  K+   
Sbjct: 191 --GYIFFKENCS 200

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	259
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	100.0
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	100.0
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	100.0
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	100.0
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	100.0
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	100.0
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	100.0
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	100.0
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	100.0
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	100.0
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	100.0
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	100.0
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	100.0
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	100.0
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	100.0
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	100.0
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.81
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.75
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.71
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.7
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.7
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.69
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.69
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.68
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.68
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.68
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.66
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.66
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.66
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.65
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.65
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.65
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.64
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.64
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.64
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.64
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.64
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.63
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.63
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.63
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.63
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.63
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.63
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.62
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.62
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.62
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.62
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.61
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.61
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.61
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.61
3ocj_A	305	Putative exported protein; structural genomics, PS	99.6
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.6
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.6
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.59
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.57
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.57
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.57
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.57
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.56
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.56
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.56
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.55
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.55
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.54
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.54
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.54
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.54
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.53
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.53
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.52
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.52
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.51
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.51
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.49
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.49
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.48
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.48
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.47
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.47
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.47
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.47
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.46
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.46
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.45
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.45
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.44
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.43
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.42
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.42
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.42
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.4
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.39
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.39
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.39
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.39
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.37
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.36
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.36
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.35
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.33
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.33
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.32
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.32
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.32
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.32
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.32
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.31
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.31
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.31
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.31
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.31
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.31
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.3
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.3
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.3
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.3
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.3
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.3
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.3
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.29
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.29
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.29
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.29
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.29
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.28
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.27
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.27
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.27
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.26
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.26
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.26
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.25
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.24
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.24
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.24
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.24
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.24
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.24
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.23
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.23
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.23
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.23
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.23
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.23
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.22
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.22
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.22
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.22
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.22
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.22
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.22
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.22
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.21
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.21
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.2
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.2
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.2
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.2
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.2
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.19
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.19
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.19
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.18
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.18
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.18
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.18
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.18
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.17
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.17
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.17
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.17
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.16
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.15
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.15
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.15
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.14
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.14
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.13
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.13
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.13
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.13
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.12
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.12
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.12
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.12
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	99.11
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.11
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.1
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.1
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.09
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.08
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.07
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.07
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.07
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.06
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.06
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.06
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.06
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.06
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.05
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.05
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.05
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.05
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.05
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.04
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.04
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.04
2o07_A	304	Spermidine synthase; structural genomics, structur	99.04
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.04
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	99.03
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.03
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.03
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.02
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.01
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.01
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.01
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.0
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.0
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	98.98
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	98.98
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	98.98
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	98.98
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	98.97
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	98.96
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	98.93
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	98.92
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	98.89
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	98.87
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	98.85
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	98.83
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.82
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	98.82
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	98.81
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	98.8
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	98.78
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	98.78
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	98.78
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.74
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	98.74
3k6r_A	278	Putative transferase PH0793; structural genomics,	98.73
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	98.73
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	98.72
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	98.69
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	98.67
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	98.66
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	98.66
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	98.62
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	98.61
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	98.6
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.59
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.59
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	98.58
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	98.56
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.55
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.54
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	98.51
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	98.5
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.45
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.43
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	98.43
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.43
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	98.42
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.39
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	98.38
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.36
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.29
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	98.26
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.23
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	98.2
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	98.2
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	98.18
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	98.12
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.05
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	98.05
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.05
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.04
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	98.03
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.02
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	97.94
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	97.82
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	97.82
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	97.8
3khk_A	544	Type I restriction-modification system methylation	97.77
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	97.71
3ll7_A	410	Putative methyltransferase; methytransferase, stru	97.69
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	97.68
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	97.62
3lkd_A	542	Type I restriction-modification system methyltrans	97.59
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	97.57
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	97.56
3cvo_A	202	Methyltransferase-like protein of unknown functio;	97.47
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	97.19
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.04
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	97.0
3iei_A	334	Leucine carboxyl methyltransferase 1; LCMT-1, S-ad	96.94
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	96.74
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	96.58
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	96.54
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	96.35
3ufb_A	530	Type I restriction-modification system methyltran	96.25
2zig_A	297	TTHA0409, putative modification methylase; methylt	95.97
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	95.61
2heo_A	67	Z-DNA binding protein 1; protein DLM1-Z-DNA comple	95.26
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	95.11
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	95.1
1y0u_A	96	Arsenical resistance operon repressor, putative; s	94.43
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	93.97
3r4k_A	260	Transcriptional regulator, ICLR family; DNA/RNA-bi	93.91
3b73_A	111	PHIH1 repressor-like protein; winged-helix-turn-he	93.9
2oo3_A	283	Protein involved in catabolism of external DNA; st	93.88
3iht_A	174	S-adenosyl-L-methionine methyl transferase; YP_165	93.53
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	93.37
3mq0_A	275	Transcriptional repressor of the blcabc operon; he	93.29
1qbj_A	81	Protein (double-stranded RNA specific adenosine D	93.28
2xrn_A	241	HTH-type transcriptional regulator TTGV; DNA-bindi	93.13
3pqk_A	102	Biofilm growth-associated repressor; helix-turn-he	92.73
2g7u_A	257	Transcriptional regulator; ICLR family, structural	92.61
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	92.56
1u2w_A	122	CADC repressor, cadmium efflux system accessory pr	92.38
1mkm_A	249	ICLR transcriptional regulator; structural genomic	92.26
2ia2_A	265	Putative transcriptional regulator; SAD, PSI-2, st	92.15
1xmk_A	79	Double-stranded RNA-specific adenosine deaminase;	92.14
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	92.0
3jth_A	98	Transcription activator HLYU; transcription factor	91.81
1qgp_A	77	Protein (double stranded RNA adenosine deaminase);	91.47
2o0y_A	260	Transcriptional regulator; ICLR-family, structural	91.34
1r7j_A	95	Conserved hypothetical protein SSO10A; winged heli	91.31
2wte_A	244	CSA3; antiviral protein, viral resistance, winged	91.28
3cuo_A	99	Uncharacterized HTH-type transcriptional regulato;	90.47
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	90.46
1r1u_A	106	CZRA, repressor protein; zinc, DNA binding, transc	90.35
3f6o_A	118	Probable transcriptional regulator, ARSR family pr	90.18
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	89.73
1ylf_A	149	RRF2 family protein; structural genomics, transcri	89.66
3k69_A	162	Putative transcription regulator; putative transcr	89.56
1ub9_A	100	Hypothetical protein PH1061; helix-turn-helix moti	89.49
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	89.47
3df8_A	111	Possible HXLR family transcriptional factor; APC89	89.47
2jsc_A	118	Transcriptional regulator RV1994C/MT2050; cadmium,	89.43
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	88.91
2htj_A	81	P fimbrial regulatory protein KS71A; winged helix-	88.85
2oqg_A	114	Possible transcriptional regulator, ARSR family P;	88.76
2y75_A	129	HTH-type transcriptional regulator CYMR; DNA bindi	88.74
3lwf_A	159	LIN1550 protein, putative transcriptional regulato	88.47
2kko_A	108	Possible transcriptional regulatory protein (possi	88.45
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	88.37
1jhg_A	101	Trp operon repressor; complex (regulatory protein-	88.24
2hzt_A	107	Putative HTH-type transcriptional regulator YTCD;	88.14
3f6v_A	151	Possible transcriptional regulator, ARSR family pr	87.91
2k02_A	87	Ferrous iron transport protein C; FEOC, iron-sulfu	87.62
1r1t_A	122	Transcriptional repressor SMTB; zinc, transcriptio	87.31
1xn7_A	78	Hypothetical protein YHGG; alpha+beta, GFT structu	87.29
3t8r_A	143	Staphylococcus aureus CYMR; transcriptional regula	86.88
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	86.26
4a5n_A	131	Uncharacterized HTH-type transcriptional regulato;	86.23
1on2_A	142	Transcriptional regulator MNTR; helix-turn-helix,	86.0
2f2e_A	146	PA1607; transcription factor, helix-TRUN-helix, AP	85.94
2jt1_A	77	PEFI protein; solution structure, winged helix-tur	85.89
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	85.88
1oyi_A	82	Double-stranded RNA-binding protein; (alpha+beta)	85.87
1z7u_A	112	Hypothetical protein EF0647; winged-helix-turn-hel	85.68
1xd7_A	145	YWNA; structural genomics, protein structure initi	85.68
1yyv_A	131	Putative transcriptional regulator; reductive meth	85.58
3nrv_A	148	Putative transcriptional regulator (MARR/EMRR FAM;	84.99
3ech_A	142	MEXR, multidrug resistance operon repressor; winge	84.91
2lnb_A	80	Z-DNA-binding protein 1; structural genomics, nort	84.89
2x4h_A	139	Hypothetical protein SSO2273; transcription; 2.30A	84.69
1tbx_A	99	ORF F-93, hypothetical 11.0 kDa protein; sulfolobu	84.64
3fm5_A	150	Transcriptional regulator; MCSG, PF04017, PSI, MAR	84.48
3k0l_A	162	Repressor protein; helix-turn-helix, structural ge	84.07
2pg4_A	95	Uncharacterized protein; structural genomics, join	83.89
3bja_A	139	Transcriptional regulator, MARR family, putative;	83.89
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	83.82
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	83.78
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	83.18
2fa5_A	162	Transcriptional regulator MARR/EMRR family; multip	82.99
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	82.91
2zkz_A	99	Transcriptional repressor PAGR; protein-DNA, HTH m	82.86
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	82.8
2hr3_A	147	Probable transcriptional regulator; MCSG, structur	82.7
2fbk_A	181	Transcriptional regulator, MARR family; winged-hel	82.42
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	82.29
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	82.23
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	82.21
3g3z_A	145	NMB1585, transcriptional regulator, MARR family; t	82.12
2lkp_A	119	Transcriptional regulator, ARSR family; symmetric	82.07
3cdh_A	155	Transcriptional regulator, MARR family; helix-turn	82.04
2fsw_A	107	PG_0823 protein; alpha-beta structure, helix-turn-	81.89
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	81.71
2bv6_A	142	MGRA, HTH-type transcriptional regulator MGRA; mul	81.37
2fu4_A	83	Ferric uptake regulation protein; DNA binding doma	81.14
3hsr_A	140	HTH-type transcriptional regulator SARZ; helix-tur	80.73
3bdd_A	142	Regulatory protein MARR; putative multiple antibio	80.69
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	80.67
3boq_A	160	Transcriptional regulator, MARR family; MARR famil	80.59
2gxg_A	146	146AA long hypothetical transcriptional regulator;	80.51
3r0a_A	123	Putative transcriptional regulator; structural gen	80.48
3oop_A	143	LIN2960 protein; protein structure initiative, PSI	80.26
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	80.04

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=100.00  E-value=1.1e-48  Score=346.15  Aligned_cols=250  Identities=18%  Similarity=0.309  Sum_probs=220.7

Q ss_pred             HHHHHHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCC--CCCCceeecCHhhh-hhhcCCCCC--
Q 041250            2 TLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNN--NDEEQGYVLTNASK-LLLKDNPLS--   76 (259)
Q Consensus         2 aL~~a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~--~~~~~~y~~t~~~~-~l~~~~~~~--   76 (259)
                      +|.+|+||||||.|.+.++|+|++|||+++|++++.+.|+|+.+..++++..  +...+.|++|+.++ +|.+++|.+  
T Consensus        24 ~L~aa~eLglfd~L~~~~~p~t~~eLA~~~g~~~~~l~rlLr~L~~~gll~~~~~~~~~~y~~t~~s~~~l~~~~~~~~~  103 (353)
T 4a6d_A           24 VLFAACELGVFDLLAEAPGPLDVAAVAAGVRASAHGTELLLDICVSLKLLKVETRGGKAFYRNTELSSDYLTTVSPTSQC  103 (353)
T ss_dssp             HHHHHHHHTHHHHHHHSSSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHSTTSTTCCH
T ss_pred             HHHHHHHcCHHHHHhcCCCCCCHHHHHHhhCcCHHHHHHHHHHHHHCCCEEEeccCccceeeCCHHHHHHhhcCCchHHH
Confidence            7899999999999987557999999999999999999999999988876532  23456899999987 666666532  


Q ss_pred             ----------------------------------------chhhcCchHHHHHHHHHHhcchhhhHHHHHhcccccCCCC
Q 041250           77 ----------------------------------------EYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLN  116 (259)
Q Consensus        77 ----------------------------------------~~l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~  116 (259)
                                                              +|+.++|+....|.++|...+....+.+++.++  +++..
T Consensus       104 ~~~~~~~~~~~~~~~~L~~~vr~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~aM~~~~~~~~~~~~~~~~--~~~~~  181 (353)
T 4a6d_A          104 SMLKYMGRTSYRCWGHLADAVREGRNQYLETFGVPAEELFTAIYRSEGERLQFMQALQEVWSVNGRSVLTAFD--LSVFP  181 (353)
T ss_dssp             HHHHHHHHTHHHHHTTHHHHHHHTSCCHHHHHSCCCSSHHHHHTSSHHHHHHHHHHHHTTHHHHHHHHHHSSC--GGGCS
T ss_pred             HHHHHhCHHHHHHHHHHHHHHhcCCChhHHhcCCChHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhcC--cccCC
Confidence                                                    234467788889999999988888889999999  88888


Q ss_pred             eEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhccc-----CCCCeEEEeCCCCC-CCCCccEEeehhhhccCChHH
Q 041250          117 SLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES-----DLVNLKYVGGDMFK-AISPAYAVLLKWILLDWNDEE  190 (259)
Q Consensus       117 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-----~~~ri~~~~~d~~~-~~~~~D~~~~~~vlh~~~d~~  190 (259)
                      +|||||||+|.++.++++++|+++++++|+|++++.+++     ..+||+++.+||++ +.|++|+|+++++||+|+|++
T Consensus       182 ~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~~~D~~~~~~vlh~~~d~~  261 (353)
T 4a6d_A          182 LMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLPEADLYILARVLHDWADGK  261 (353)
T ss_dssp             EEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--CCSEEEEESCTTTSCCCCCSEEEEESSGGGSCHHH
T ss_pred             eEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcccCceeeecCccccCCCCCceEEEeeeecccCCHHH
Confidence            999999999999999999999999999999999998876     46899999999998 566899999999999999999


Q ss_pred             HHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccCHHHHHHHHhcC
Q 041250          191 CVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAKIFADS  259 (259)
Q Consensus       191 ~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~e~~~ll~~a  259 (259)
                      +.+||++++++|+|   ||+|+|+|.++++++..|   ....++|+.||+.++|++||.+||++|+++|
T Consensus       262 ~~~iL~~~~~al~p---gg~lli~e~~~~~~~~~~---~~~~~~dl~ml~~~~g~ert~~e~~~ll~~A  324 (353)
T 4a6d_A          262 CSHLLERIYHTCKP---GGGILVIESLLDEDRRGP---LLTQLYSLNMLVQTEGQERTPTHYHMLLSSA  324 (353)
T ss_dssp             HHHHHHHHHHHCCT---TCEEEEEECCCCTTSCCC---HHHHHHHHHHHHSSSCCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhCCC---CCEEEEEEeeeCCCCCCC---HHHHHHHHHHHHhCCCcCCCHHHHHHHHHHC
Confidence            99999999999999   999999999999887665   3457899999999999999999999999875

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=100.00  E-value=3.2e-42  Score=305.98  Aligned_cols=254  Identities=31%  Similarity=0.554  Sum_probs=215.5

Q ss_pred             CHHHHHHHcCcchhhhcCC-CCCCHHHHHHHcCC--Ccc---ccccceeccccccCCCCCC----C---CceeecCHhhh
Q 041250            1 MTLKCAFQLGIPDIINKHG-KPMTLNELVSALTI--NLS---KTQCFFAQQKLVSSGNNND----E---EQGYVLTNASK   67 (259)
Q Consensus         1 ~aL~~a~~l~lf~~L~~~~-~~~t~~elA~~~~~--~~~---~l~~ll~~~~~~~~~~~~~----~---~~~y~~t~~~~   67 (259)
                      ++|++|+++|||++|.+.+ +|.|++|||+++|+  +++   .+.|+|+++...+++....    .   ++.|.+|+.++
T Consensus        35 ~~l~~a~~Lgifd~L~~~g~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s~  114 (364)
T 3p9c_A           35 MTLKNAIELGLLEILVAAGGKSLTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVVTCLVEEGKDGRLSRSYGAAPVCK  114 (364)
T ss_dssp             HHHHHHHHHTHHHHHHHTTTCCBCHHHHHHTTTCTTCTTHHHHHHHHHHHHHHTTSEEEEEEECSSSCEEEEEEECGGGG
T ss_pred             HHHHHHHHCChHHHHhhcCCCCCCHHHHHHhcCCCCCccchhhHHHHHHHHHhCCCEEEeccccCCCCcCCEEecCHHHH
Confidence            4799999999999999753 69999999999998  888   8999999999888753211    1   47899999999


Q ss_pred             hhhcCC-CCC----------------------------------------chhhcCchHHHHHHHHHHhcchhhhHHHHH
Q 041250           68 LLLKDN-PLS----------------------------------------EYAGDESKLNNFFNEAMASDARLATSVMIQ  106 (259)
Q Consensus        68 ~l~~~~-~~~----------------------------------------~~l~~~~~~~~~f~~~m~~~~~~~~~~~~~  106 (259)
                      .|+.+. +.+                                        +|+.++|+..+.|.++|...+....+.+++
T Consensus       115 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~r~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~  194 (364)
T 3p9c_A          115 FLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAYGMSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLLE  194 (364)
T ss_dssp             GSSCCTTSCCTHHHHHHHTSHHHHGGGGGHHHHHHHCSCHHHHHHSSCHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCCCCCCHHHHHHHhcCHHHHHHHhCHHHHHhhCCChHHHhcCCCHHHHHHhCHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            887653 321                                        344567888889999999887777777888


Q ss_pred             hcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhcccCCCCeEEEeCCCCCCCCCccEEeehhhhccC
Q 041250          107 KCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDW  186 (259)
Q Consensus       107 ~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~~~~~~D~~~~~~vlh~~  186 (259)
                      .++. +++..+|||||||+|.++..+++++|+++++++|+|.+++.++ ..+||+|+.+|+++++|..|+|++++++|+|
T Consensus       195 ~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~-~~~~v~~~~~D~~~~~p~~D~v~~~~vlh~~  272 (364)
T 3p9c_A          195 LYHG-FEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAP-QFPGVTHVGGDMFKEVPSGDTILMKWILHDW  272 (364)
T ss_dssp             HCCT-TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCC-CCTTEEEEECCTTTCCCCCSEEEEESCGGGS
T ss_pred             hccc-ccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhh-hcCCeEEEeCCcCCCCCCCCEEEehHHhccC
Confidence            8762 5677899999999999999999999999999999999999988 4589999999999987766999999999999


Q ss_pred             ChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhh-ccCccccCHHHHHHHHhcC
Q 041250          187 NDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMV-LLTGTERDEKEWAKIFADS  259 (259)
Q Consensus       187 ~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~-~~~g~~rt~~e~~~ll~~a  259 (259)
                      +++++.++|++++++|+|   ||+|+|+|.+.++....+........+|+.|++ ..+|++||.+||++++++|
T Consensus       273 ~d~~~~~~L~~~~~~L~p---gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~A  343 (364)
T 3p9c_A          273 SDQHCATLLKNCYDALPA---HGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGA  343 (364)
T ss_dssp             CHHHHHHHHHHHHHHSCT---TCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHcCC---CCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHHHHHHHHC
Confidence            999999999999999999   999999999988765543222234678999995 4699999999999999876

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=100.00  E-value=9.1e-42  Score=301.26  Aligned_cols=246  Identities=22%  Similarity=0.390  Sum_probs=216.5

Q ss_pred             CHHHHHHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhhhhhhcCCCCC----
Q 041250            1 MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASKLLLKDNPLS----   76 (259)
Q Consensus         1 ~aL~~a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~~~l~~~~~~~----   76 (259)
                      ++|++|+++|||++|.+  +|.|++|||+++|++++.++|+|+++...+++  +.+++.|.+|+.++.|.++++.+    
T Consensus        37 ~~l~~a~~lglf~~l~~--g~~t~~elA~~~g~~~~~l~rlLr~l~~~g~l--~~~~~~y~~t~~s~~l~~~~~~~~~~~  112 (348)
T 3lst_A           37 AALRAAAAVGVADHLVD--GPRTPAELAAATGTDADALRRVLRLLAVRDVV--RESDGRFALTDKGAALRSDSPVPARAG  112 (348)
T ss_dssp             HHHHHHHHHTGGGGGTT--SCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSE--EEETTEEEECTTTGGGSTTSSSCSHHH
T ss_pred             HHHHHHHHcCchhHhhC--CCCCHHHHHHHhCcCHHHHHHHHHHHHhCCCE--EecCCEEecCHHHHHHhcCCCccHHHH
Confidence            47999999999999986  79999999999999999999999999998876  33788999999999887665421    


Q ss_pred             ------------------------------------chhhcCchHHHHHHHHHHhcchhhhHHHHHhcccccCCCCeEEE
Q 041250           77 ------------------------------------EYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVD  120 (259)
Q Consensus        77 ------------------------------------~~l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlD  120 (259)
                                                          +|+.++|+..+.|.++|...+....+.+++.++  +++..+|||
T Consensus       113 ~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~--~~~~~~vLD  190 (348)
T 3lst_A          113 ILMFTDTMFWTMSHRVASALGPERPAFADIFGSSLDAYFDGDAEVEALYYEGMETVSAAEHLILARAGD--FPATGTVAD  190 (348)
T ss_dssp             HHHHTSHHHHHHHHTHHHHTCTTCCCHHHHHSSCHHHHHTTCHHHHHHHHHHHHHHHHTTHHHHHHHSC--CCSSEEEEE
T ss_pred             HHHhcCHHHHHHHHHHHHHHhcCCChhhHHhCCCHHHHHHhCHHHHHHHHHHHHHhhhhhHHHHHHhCC--ccCCceEEE
Confidence                                                344567888889999999988887888999998  788899999


Q ss_pred             ecCCchHHHHHHHHHCCCCeEEEeechHHHhhccc----CCCCeEEEeCCCCCCCCCccEEeehhhhccCChHHHHHHHH
Q 041250          121 VGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES----DLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDEECVKILK  196 (259)
Q Consensus       121 vGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~----~~~ri~~~~~d~~~~~~~~D~~~~~~vlh~~~d~~~~~il~  196 (259)
                      ||||+|.++..+++++|+++++++|+|+++...+.    ..+||+++.+|+++++|+||+|++++++|+|+++++.++|+
T Consensus       191 vG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~  270 (348)
T 3lst_A          191 VGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFLREVPHADVHVLKRILHNWGDEDSVRILT  270 (348)
T ss_dssp             ETCTTSHHHHHHHHHCTTEEEEEEECHHHHTTCCCCCGGGTTSEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHH
T ss_pred             ECCccCHHHHHHHHHCCCCEEEEecCHHHhhcccccccCCCCCeEEEecCCCCCCCCCcEEEEehhccCCCHHHHHHHHH
Confidence            99999999999999999999999999888873321    45799999999998777999999999999999999999999


Q ss_pred             HHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccCHHHHHHHHhcC
Q 041250          197 KCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAKIFADS  259 (259)
Q Consensus       197 ~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~e~~~ll~~a  259 (259)
                      +++++|+|   ||+|+|.|.+.++....    .....+|+.|+...+|++||.+||++++++|
T Consensus       271 ~~~~~Lkp---gG~l~i~e~~~~~~~~~----~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~a  326 (348)
T 3lst_A          271 NCRRVMPA---HGRVLVIDAVVPEGNDA----HQSKEMDFMMLAARTGQERTAAELEPLFTAA  326 (348)
T ss_dssp             HHHHTCCT---TCEEEEEECCBCSSSSC----CHHHHHHHHHHHTTSCCCCBHHHHHHHHHHT
T ss_pred             HHHHhcCC---CCEEEEEEeccCCCCCc----chhhhcChhhhhcCCCcCCCHHHHHHHHHHC
Confidence            99999999   99999999998876443    2346889999988899999999999999875

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=100.00  E-value=2.2e-41  Score=301.14  Aligned_cols=246  Identities=26%  Similarity=0.462  Sum_probs=218.3

Q ss_pred             CHHHHHHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCce-eecCHhhhhhhcCCCCC---
Q 041250            1 MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQG-YVLTNASKLLLKDNPLS---   76 (259)
Q Consensus         1 ~aL~~a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~-y~~t~~~~~l~~~~~~~---   76 (259)
                      ++|++|+++|||+.|++  +|.|++|||+++|++++.+.|+|+++...+++. +.+++. |.+|+.++.|.++++.+   
T Consensus        53 ~~l~~a~~lglf~~l~~--g~~t~~eLA~~~g~~~~~l~rlLr~L~~~g~l~-~~~~~~~y~~t~~s~~L~~~~~~~~~~  129 (369)
T 3gwz_A           53 RAIHVAVELGVPELLQE--GPRTATALAEATGAHEQTLRRLLRLLATVGVFD-DLGHDDLFAQNALSAVLLPDPASPVAT  129 (369)
T ss_dssp             HHHHHHHHHTTGGGGTT--SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSE-ECSSTTEEECCHHHHTTSCCTTCHHHH
T ss_pred             HHHHHHHHCChhhhhcC--CCCCHHHHHHHHCcCHHHHHHHHHHHHhCCCEE-EeCCCceEecCHHHHHHhcCCchhHHH
Confidence            47999999999999996  899999999999999999999999999988762 345678 99999999887665521   


Q ss_pred             -------------------------------------chhhcCchHHHHHHHHHHhcchhhhHHHHHhcccccCCCCeEE
Q 041250           77 -------------------------------------EYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLV  119 (259)
Q Consensus        77 -------------------------------------~~l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vl  119 (259)
                                                           +|+.++|+..+.|.++|...+....+.+++.++  +++..+||
T Consensus       130 ~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~--~~~~~~vl  207 (369)
T 3gwz_A          130 DARFQAAPWHWRAWEQLTHSVRTGEASFDVANGTSFWQLTHEDPKARELFNRAMGSVSLTEAGQVAAAYD--FSGAATAV  207 (369)
T ss_dssp             HHHHHHSHHHHHHHHTHHHHHHHSSCSHHHHHSSCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHSC--CTTCSEEE
T ss_pred             HHHHcCCHHHHHHHHhHHHHHhCCCChhHhhcCCCHHHHHHhCHHHHHHHHHHHHHHHhhhHHHHHHhCC--CccCcEEE
Confidence                                                 345567888889999999888777788898888  77889999


Q ss_pred             EecCCchHHHHHHHHHCCCCeEEEeechHHHhhccc------CCCCeEEEeCCCCCCCC-CccEEeehhhhccCChHHHH
Q 041250          120 DVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES------DLVNLKYVGGDMFKAIS-PAYAVLLKWILLDWNDEECV  192 (259)
Q Consensus       120 DvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~d~~~~~~-~~D~~~~~~vlh~~~d~~~~  192 (259)
                      |||||+|.++..+++++|+++++++|+|.+++.+++      ..+||+|+.+|+++++| +||+|++++++|+|+++++.
T Consensus       208 DvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~p~~~D~v~~~~vlh~~~d~~~~  287 (369)
T 3gwz_A          208 DIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPGDFFETIPDGADVYLIKHVLHDWDDDDVV  287 (369)
T ss_dssp             EETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTTCCCSSCSEEEEESCGGGSCHHHHH
T ss_pred             EeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhcCcCCceEEeccCCCCCCCCCceEEEhhhhhccCCHHHHH
Confidence            999999999999999999999999999999998886      36899999999998777 79999999999999999999


Q ss_pred             HHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccCHHHHHHHHhcC
Q 041250          193 KILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAKIFADS  259 (259)
Q Consensus       193 ~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~e~~~ll~~a  259 (259)
                      ++|++++++|+|   ||+++|+|.+.++....    . ..++|+.|+...+|++||.+||++++++|
T Consensus       288 ~~L~~~~~~L~p---gG~l~i~e~~~~~~~~~----~-~~~~d~~~~~~~~g~~~t~~e~~~ll~~a  346 (369)
T 3gwz_A          288 RILRRIATAMKP---DSRLLVIDNLIDERPAA----S-TLFVDLLLLVLVGGAERSESEFAALLEKS  346 (369)
T ss_dssp             HHHHHHHTTCCT---TCEEEEEEEBCCSSCCH----H-HHHHHHHHHHHHSCCCBCHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCC---CCEEEEEEeccCCCCCC----c-hhHhhHHHHhhcCCccCCHHHHHHHHHHC
Confidence            999999999999   99999999998876543    2 46889999988999999999999999876

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=100.00  E-value=2.7e-41  Score=296.33  Aligned_cols=244  Identities=24%  Similarity=0.324  Sum_probs=209.5

Q ss_pred             CHHHHHHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhhhhhhcCCCCC----
Q 041250            1 MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASKLLLKDNPLS----   76 (259)
Q Consensus         1 ~aL~~a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~~~l~~~~~~~----   76 (259)
                      ++|++|+++|||++|.+  +|.|++|||+++|++++.+.|+|+.+...+++. +.+++.|.+|+.++.|..+++.+    
T Consensus        20 ~~l~~a~~lglf~~l~~--g~~t~~elA~~~~~~~~~l~rlLr~l~~~gl~~-~~~~~~y~~t~~s~~l~~~~~~~~~~~   96 (332)
T 3i53_A           20 MAVRVAATLRVADHIAA--GHRTAAEIASAAGAHADSLDRLLRHLVAVGLFT-RDGQGVYGLTEFGEQLRDDHAAGKRKW   96 (332)
T ss_dssp             HHHHHHHHHTHHHHHHT--TCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEE-ECTTSBEEECTTGGGGSTTCTTCCHHH
T ss_pred             HHHHHHHHcChHHHHhc--CCCCHHHHHHHHCcCHHHHHHHHHHHHhCCcEE-ecCCCeEEcCHhHHHHhcCCchhHHHH
Confidence            47999999999999986  799999999999999999999999999888652 34578999999999877655421    


Q ss_pred             -------------------------------------chhhcCchHHHHHHHHHHhcchhhhHHHHHhcccccCCCCeEE
Q 041250           77 -------------------------------------EYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLV  119 (259)
Q Consensus        77 -------------------------------------~~l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vl  119 (259)
                                                           +|+.++|+..+.|.++|...+....+.+++.++  +++..+||
T Consensus        97 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~--~~~~~~vl  174 (332)
T 3i53_A           97 LDMNSAVGRGDLGFVELAHSIRTGQPAYPVRYGTSFWEDLGSDPVLSASFDTLMSHHLELDYTGIAAKYD--WAALGHVV  174 (332)
T ss_dssp             HCTTSHHHHHGGGGGGHHHHHHHSSCSHHHHHSSCHHHHHHHCHHHHHHHHHHHHHHHHHHHTTGGGSSC--CGGGSEEE
T ss_pred             HHHcCCHhHHHHHHHHhHHHHhcCCCHHHHhhCCCHHHHHHhCHHHHHHHHHHHHHhHHhhHHHHHHhCC--CCCCCEEE
Confidence                                                 223456667778888888776665566777777  66778999


Q ss_pred             EecCCchHHHHHHHHHCCCCeEEEeechHHHhhccc------CCCCeEEEeCCCCCCCC-CccEEeehhhhccCChHHHH
Q 041250          120 DVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES------DLVNLKYVGGDMFKAIS-PAYAVLLKWILLDWNDEECV  192 (259)
Q Consensus       120 DvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~d~~~~~~-~~D~~~~~~vlh~~~d~~~~  192 (259)
                      |||||+|.++..+++++|+.+++++|+|.+++.+++      ..+||+|+.+|+++++| +||+|++++++|+|+++++.
T Consensus       175 DvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~p~~~D~v~~~~vlh~~~~~~~~  254 (332)
T 3i53_A          175 DVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDPLPAGAGGYVLSAVLHDWDDLSAV  254 (332)
T ss_dssp             EETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCSCSEEEEESCGGGSCHHHHH
T ss_pred             EeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCCCCCCCCCcEEEEehhhccCCHHHHH
Confidence            999999999999999999999999999999998886      35899999999998787 79999999999999999999


Q ss_pred             HHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccCHHHHHHHHhcC
Q 041250          193 KILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAKIFADS  259 (259)
Q Consensus       193 ~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~e~~~ll~~a  259 (259)
                      ++|++++++|+|   ||+|+|+|.+.++.  .+     ...+|+.|+...+|++||.+||++++++|
T Consensus       255 ~~l~~~~~~L~p---gG~l~i~e~~~~~~--~~-----~~~~d~~~~~~~~~~~~t~~e~~~ll~~a  311 (332)
T 3i53_A          255 AILRRCAEAAGS---GGVVLVIEAVAGDE--HA-----GTGMDLRMLTYFGGKERSLAELGELAAQA  311 (332)
T ss_dssp             HHHHHHHHHHTT---TCEEEEEECCCC-----C-----CHHHHHHHHHHHSCCCCCHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCC---CCEEEEEeecCCCC--Cc-----cHHHHHHHHhhCCCCCCCHHHHHHHHHHC
Confidence            999999999999   99999999988876  22     24789999888899999999999999875

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=100.00  E-value=8e-41  Score=297.37  Aligned_cols=254  Identities=30%  Similarity=0.554  Sum_probs=213.1

Q ss_pred             CHHHHHHHcCcchhhhcC---CCCCCHHHHHHHcC-CCcc---ccccceeccccccCCCCC----CC---CceeecCHhh
Q 041250            1 MTLKCAFQLGIPDIINKH---GKPMTLNELVSALT-INLS---KTQCFFAQQKLVSSGNNN----DE---EQGYVLTNAS   66 (259)
Q Consensus         1 ~aL~~a~~l~lf~~L~~~---~~~~t~~elA~~~~-~~~~---~l~~ll~~~~~~~~~~~~----~~---~~~y~~t~~~   66 (259)
                      ++|++|+++|||+.|.+.   ++|.|++|||+++| .++.   .+.|+|+++...+++...    ..   +++|.+|+.+
T Consensus        36 ~~l~~a~~Lglfd~L~~~~gp~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~g~~~~~y~~t~~s  115 (368)
T 3reo_A           36 MALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVVTYTLRELPSGKVERLYGLAPVC  115 (368)
T ss_dssp             HHHHHHHHTTHHHHHHHHCCTTCCBCHHHHHTTSSCCCTTHHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECTTH
T ss_pred             HHHHHHHHCCchhHHhhcCCCCCCcCHHHHHHhcCcCCCcchhhHHHHHHHHHhCCCeEEecccCCCCcccceeCcCHHH
Confidence            479999999999999872   24799999999998 4665   899999999888765321    11   3789999999


Q ss_pred             hhhhcCC-CCC----------------------------------------chhhcCchHHHHHHHHHHhcchhhhHHHH
Q 041250           67 KLLLKDN-PLS----------------------------------------EYAGDESKLNNFFNEAMASDARLATSVMI  105 (259)
Q Consensus        67 ~~l~~~~-~~~----------------------------------------~~l~~~~~~~~~f~~~m~~~~~~~~~~~~  105 (259)
                      +.|..+. +.+                                        +|+.++|+..+.|.++|...+....+.++
T Consensus       116 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~  195 (368)
T 3reo_A          116 KFLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGGIPFNKAYGMNIFDYHGTDHRINKVFNKGMSSNSTITMKKIL  195 (368)
T ss_dssp             HHHSCCTTSCCSHHHHHHHTCHHHHGGGGGHHHHHHHCSCHHHHHSSSCHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCCCCCHHHHHHHhcCHHHHhhhhchHHHHhcCCCHHHHHhCCCHHHHHhhCHHHHHHHHHHHHhhhhhHHHHHH
Confidence            9776543 321                                        33456778888999999988877777788


Q ss_pred             HhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhcccCCCCeEEEeCCCCCCCCCccEEeehhhhcc
Q 041250          106 QKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLD  185 (259)
Q Consensus       106 ~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~~~~~~D~~~~~~vlh~  185 (259)
                      +.++. +++..+|||||||+|.++..+++++|+++++++|+|.+++.++ ..+||+|+.+|+++++|..|+|++++++|+
T Consensus       196 ~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~-~~~~v~~~~~d~~~~~p~~D~v~~~~vlh~  273 (368)
T 3reo_A          196 EMYNG-FEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAP-AFSGVEHLGGDMFDGVPKGDAIFIKWICHD  273 (368)
T ss_dssp             TTCCT-TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCC-CCTTEEEEECCTTTCCCCCSEEEEESCGGG
T ss_pred             Hhccc-ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhh-hcCCCEEEecCCCCCCCCCCEEEEechhhc
Confidence            88762 5677899999999999999999999999999999999999988 457999999999998876699999999999


Q ss_pred             CChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhc-cCccccCHHHHHHHHhcC
Q 041250          186 WNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVL-LTGTERDEKEWAKIFADS  259 (259)
Q Consensus       186 ~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~-~~g~~rt~~e~~~ll~~a  259 (259)
                      |+++++.++|++++++|+|   ||+|+|+|.+.++....+........+|+.|+.. .+|++||.+||+++|++|
T Consensus       274 ~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~ll~~A  345 (368)
T 3reo_A          274 WSDEHCLKLLKNCYAALPD---HGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMAS  345 (368)
T ss_dssp             BCHHHHHHHHHHHHHHSCT---TCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHcCC---CCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHHHHHHHHC
Confidence            9999999999999999999   9999999999887665432223446789999876 499999999999999876

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=100.00  E-value=1.8e-39  Score=284.72  Aligned_cols=244  Identities=23%  Similarity=0.331  Sum_probs=211.7

Q ss_pred             CHHHHHHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhhhhhhcCCCCC----
Q 041250            1 MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASKLLLKDNPLS----   76 (259)
Q Consensus         1 ~aL~~a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~~~l~~~~~~~----   76 (259)
                      ++|++++++|||+.|.+  +|.|++|||+++|++++.++|+|+.+...+++. +.+++.|.+|+.++.|. ++|.+    
T Consensus        23 ~~l~~~~~lgi~~~l~~--~~~t~~ela~~~~~~~~~l~r~Lr~L~~~g~l~-~~~~~~y~~t~~s~~l~-~~~~~~~~~   98 (334)
T 2ip2_A           23 RCVYVATRLGLADLIES--GIDSDETLAAAVGSDAERIHRLMRLLVAFEIFQ-GDTRDGYANTPTSHLLR-DVEGSFRDM   98 (334)
T ss_dssp             HHHHHHHHTTHHHHHHT--TCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEE-EETTTEEEECHHHHTTS-SSTTCSHHH
T ss_pred             HHHHHHHHcCcHHHHhC--CCCCHHHHHHHhCcCHHHHHHHHHHHHhCCceE-ecCCCeEecCHHHHHHh-CCCccHHHH
Confidence            37899999999999986  799999999999999999999999999888752 33458999999999877 55421    


Q ss_pred             -----------------------------------chhhcCchHHHHHHHHHHhcchhhhHHHHHhcccccCCCCeEEEe
Q 041250           77 -----------------------------------EYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDV  121 (259)
Q Consensus        77 -----------------------------------~~l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDv  121 (259)
                                                         +|+.++|+..+.|.++| ..+....+.+++.++  +++ .+||||
T Consensus        99 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m-~~~~~~~~~~~~~~~--~~~-~~vlDv  174 (334)
T 2ip2_A           99 VLFYGEEFHAAWTPACEALLSGTPGFELAFGEDFYSYLKRCPDAGRRFLLAM-KASNLAFHEIPRLLD--FRG-RSFVDV  174 (334)
T ss_dssp             HHHHTTHHHHHTTTHHHHHHHCCCHHHHHHSSCHHHHHHHCHHHHHHHHHHH-GGGHHHHHHHHHHSC--CTT-CEEEEE
T ss_pred             HHHhcCchhhHHHHHHHHHhcCCChhhhhcCCCHHHHHhhChHHHHHHHHHH-HHHHHHHHHHHHhCC--CCC-CEEEEe
Confidence                                               23445777888899999 777777788888888  667 999999


Q ss_pred             cCCchHHHHHHHHHCCCCeEEEeechHHHhhccc------CCCCeEEEeCCCCCCCC-CccEEeehhhhccCChHHHHHH
Q 041250          122 GGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES------DLVNLKYVGGDMFKAIS-PAYAVLLKWILLDWNDEECVKI  194 (259)
Q Consensus       122 GgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~d~~~~~~-~~D~~~~~~vlh~~~d~~~~~i  194 (259)
                      |||+|.++..+++++|+.+++++|+|.+++.+++      ..+|++++.+|+++++| +||+|++++++|+|+++++.++
T Consensus       175 G~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~  254 (334)
T 2ip2_A          175 GGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQEVPSNGDIYLLSRIIGDLDEAASLRL  254 (334)
T ss_dssp             TCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHHTTSEEEEESCTTTCCCSSCSEEEEESCGGGCCHHHHHHH
T ss_pred             CCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCCCCCCCCCCCEEEEchhccCCCHHHHHHH
Confidence            9999999999999999999999999989988876      25799999999999776 5999999999999999999999


Q ss_pred             HHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccCHHHHHHHHhcC
Q 041250          195 LKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAKIFADS  259 (259)
Q Consensus       195 l~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~e~~~ll~~a  259 (259)
                      |++++++|+|   ||+++|.|.+.++....    .....+|+.|+...+|++||.+||++++++|
T Consensus       255 l~~~~~~L~p---gG~l~i~e~~~~~~~~~----~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~a  312 (334)
T 2ip2_A          255 LGNCREAMAG---DGRVVVIERTISASEPS----PMSVLWDVHLFMACAGRHRTTEEVVDLLGRG  312 (334)
T ss_dssp             HHHHHHHSCT---TCEEEEEECCBCSSSCC----HHHHHHHHHHHHHHSCCCCBHHHHHHHHHHT
T ss_pred             HHHHHHhcCC---CCEEEEEEeccCCCCCc----chhHHhhhHhHhhCCCcCCCHHHHHHHHHHC
Confidence            9999999999   99999999988775442    2356789999887899999999999999875

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=100.00  E-value=3.7e-39  Score=284.93  Aligned_cols=255  Identities=45%  Similarity=0.794  Sum_probs=210.6

Q ss_pred             CHHHHHHHcCcchhhhcCCCCCCHHHHHHHcCCC---ccccccceeccccccCCCCCC--CCceeecCHhhhhhhcCCCC
Q 041250            1 MTLKCAFQLGIPDIINKHGKPMTLNELVSALTIN---LSKTQCFFAQQKLVSSGNNND--EEQGYVLTNASKLLLKDNPL   75 (259)
Q Consensus         1 ~aL~~a~~l~lf~~L~~~~~~~t~~elA~~~~~~---~~~l~~ll~~~~~~~~~~~~~--~~~~y~~t~~~~~l~~~~~~   75 (259)
                      ++|++++++|||+.|+..++|.|++|||+++|++   ++.++|+|+.+...+++. +.  .++.|.+|+.+++|+++++.
T Consensus        31 ~~l~~a~~lgif~~L~~~~~~~t~~ela~~~~~~~~~~~~l~rlLr~L~~~gll~-~~~~~~~~y~~t~~s~~L~~~~~~  109 (352)
T 1fp2_A           31 MSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLMRYLAHNGFFE-IITKEEESYALTVASELLVRGSDL  109 (352)
T ss_dssp             HHHHHHHHTTHHHHHHHHTSCEEHHHHHHHHTCCGGGHHHHHHHHHHHHHTTSEE-EEESSSEEEEECHHHHTTSTTSSS
T ss_pred             HHHHHHHHCChhhhhhhcCCCccHHHHHHHhCcCCCChHHHHHHHHHHHhCCeEE-EecCCCCeEeCCHHHHHHhCCCCc
Confidence            4789999999999998743599999999999995   778999999999888752 22  36899999999988876642


Q ss_pred             C-----------------------------------------chhhcCchHHHHHHHHHHhcchhhhHHHHHhcccccCC
Q 041250           76 S-----------------------------------------EYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEG  114 (259)
Q Consensus        76 ~-----------------------------------------~~l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~  114 (259)
                      +                                         +|+.++|+..+.|.++|...+....+. ++.+++.+++
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~-~~~~~~~~~~  188 (352)
T 1fp2_A          110 CLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLA-LRDCDFVFDG  188 (352)
T ss_dssp             CCHHHHHHHTCHHHHHGGGGHHHHHTCSSCCHHHHHHSSCHHHHHHHCHHHHHHHHHHHHHTHHHHHHH-HHTCHHHHTT
T ss_pred             cHHHHHHHhcCchHHHHHHHHHHHHHhcCCChHHHHcCCCHHHHHHhChHHHHHHHHHHHhcchhhhhH-HHhccccccc
Confidence            2                                         223345666778889998887766666 7777222777


Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhcccCCCCeEEEeCCCCCCCCCccEEeehhhhccCChHHHHHH
Q 041250          115 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDEECVKI  194 (259)
Q Consensus       115 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~~~~~~D~~~~~~vlh~~~d~~~~~i  194 (259)
                      ..+|||||||+|.++..+++++|+++++++|+|.+++.+++ .++++++.+|+++++|+||+|++++++|+|+++++.++
T Consensus       189 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-~~~v~~~~~d~~~~~p~~D~v~~~~~lh~~~d~~~~~~  267 (352)
T 1fp2_A          189 LESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSG-SNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRI  267 (352)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCC-BTTEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHH
T ss_pred             CceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhccc-CCCcEEEeccccCCCCCccEEEeehhhccCCHHHHHHH
Confidence            88999999999999999999999999999999999999985 35699999999988788999999999999999999999


Q ss_pred             HHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccCHHHHHHHHhcC
Q 041250          195 LKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAKIFADS  259 (259)
Q Consensus       195 l~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~e~~~ll~~a  259 (259)
                      |++++++|+|.++||+++|+|.+.++....+........+|+.|+. .+|++||.+||++++++|
T Consensus       268 l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~-~~g~~~t~~e~~~ll~~a  331 (352)
T 1fp2_A          268 LKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMAC-LNGKERNEEEWKKLFIEA  331 (352)
T ss_dssp             HHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGG-GTCCCEEHHHHHHHHHHT
T ss_pred             HHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHh-ccCCCCCHHHHHHHHHHC
Confidence            9999999998222699999999988765432112345678888887 669999999999999875

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=100.00  E-value=3.9e-39  Score=285.45  Aligned_cols=257  Identities=46%  Similarity=0.762  Sum_probs=211.9

Q ss_pred             CHHHHHHHcCcchhhhcCCCCCCHHHHHHHcCC---CccccccceeccccccCCCCC-----C-C---CceeecCHhhhh
Q 041250            1 MTLKCAFQLGIPDIINKHGKPMTLNELVSALTI---NLSKTQCFFAQQKLVSSGNNN-----D-E---EQGYVLTNASKL   68 (259)
Q Consensus         1 ~aL~~a~~l~lf~~L~~~~~~~t~~elA~~~~~---~~~~l~~ll~~~~~~~~~~~~-----~-~---~~~y~~t~~~~~   68 (259)
                      ++|++|+++|||+.|+..++|.|++|||+++|+   +++.++|+|+.+...+++...     . +   ++.|.+|+.+++
T Consensus        25 ~~l~~a~~lgif~~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~g~~~~~y~~t~~s~~  104 (358)
T 1zg3_A           25 MALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNILHRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKL  104 (358)
T ss_dssp             HHHHHHHHHTHHHHHHHHTSCEEHHHHHHHTTCCTTTHHHHHHHHHHHHHTTSEEEEEECCSSSSCCCEEEEEECHHHHT
T ss_pred             HHHHHHHHCChHhHHhhcCCCcCHHHHHHhcCCCCcchHHHHHHHHHHhhCCcEEEecccccccCCCCCCEEeCCHHHHH
Confidence            479999999999999973359999999999999   578899999999988875322     1 1   479999999998


Q ss_pred             hhcCCCCC------------------------------------------chhhcCchHHH--HHHHHHHhcchhhhHHH
Q 041250           69 LLKDNPLS------------------------------------------EYAGDESKLNN--FFNEAMASDARLATSVM  104 (259)
Q Consensus        69 l~~~~~~~------------------------------------------~~l~~~~~~~~--~f~~~m~~~~~~~~~~~  104 (259)
                      |+++++.+                                          +|+.++|+..+  .|.++|...+.... .+
T Consensus       105 l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~~g~~~~~~~~~~p~~~~~~~f~~~m~~~~~~~~-~~  183 (358)
T 1zg3_A          105 LISGKPTCLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFK-LV  183 (358)
T ss_dssp             TCTTSTTCCHHHHHHHTSHHHHGGGGGHHHHHHCSCCCCHHHHHHSSCHHHHHTSGGGHHHHHHHHHHHHHHHHTHH-HH
T ss_pred             HhCCCCccHHHHHHHhcCcHHHHHHHHHHHHHhCCCCCChHHHHhCCCHHHHHhcChhhhhHHHHHHHHhcccHHHH-HH
Confidence            88766422                                          12234556667  88888988776655 77


Q ss_pred             HHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhcccCCCCeEEEeCCCCCCCCCccEEeehhhhc
Q 041250          105 IQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILL  184 (259)
Q Consensus       105 ~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~~~~~~D~~~~~~vlh  184 (259)
                      ++.+++.+++..+|||||||+|.++..+++++|+++++++|+|.+++.+++ ..+++++.+|+++++|+||+|+++++||
T Consensus       184 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-~~~v~~~~~d~~~~~~~~D~v~~~~vlh  262 (358)
T 1zg3_A          184 LQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTG-NENLNFVGGDMFKSIPSADAVLLKWVLH  262 (358)
T ss_dssp             HHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCC-CSSEEEEECCTTTCCCCCSEEEEESCGG
T ss_pred             HHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhccc-CCCcEEEeCccCCCCCCceEEEEccccc
Confidence            888832267778999999999999999999999999999999999998885 4569999999999878899999999999


Q ss_pred             cCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccCHHHHHHHHhcC
Q 041250          185 DWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAKIFADS  259 (259)
Q Consensus       185 ~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~e~~~ll~~a  259 (259)
                      +|+++++.++|++++++|+|.++||+++|+|.+.++....|........+|+.|+...+|++||.+||++++++|
T Consensus       263 ~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~a  337 (358)
T 1zg3_A          263 DWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDA  337 (358)
T ss_dssp             GSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccCCCCCCCHHHHHHHHHHc
Confidence            999999999999999999972225999999999887665421123456889999887799999999999999875

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=100.00  E-value=3.8e-39  Score=286.07  Aligned_cols=249  Identities=18%  Similarity=0.221  Sum_probs=199.3

Q ss_pred             CHHHHHHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhhhhhhcCCCCC----
Q 041250            1 MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASKLLLKDNPLS----   76 (259)
Q Consensus         1 ~aL~~a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~~~l~~~~~~~----   76 (259)
                      ++|++++++|||+.|++.++|.|++|||+++|++++.+.|+|+++...+++  +.++++|++|+.+++|+++++.+    
T Consensus        30 ~~l~~a~~lgifd~L~~~~~~~t~~eLA~~~g~~~~~l~rlLr~l~~~g~l--~~~~~~y~~t~~s~~L~~~~~~~~~~~  107 (363)
T 3dp7_A           30 QVSRLMLKFGIFQLLSGKREGYTLQEISGRTGLTRYAAQVLLEASLTIGTI--LLEEDRYVLAKAGWFLLNDKMARVNME  107 (363)
T ss_dssp             HHHHHHHHTTHHHHHHTCTTCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSE--EEETTEEEECHHHHHHHHCHHHHHHHH
T ss_pred             HHHHHHHHhCHHHHHHhcCCCCCHHHHHHHhCcCHHHHHHHHHHHhhCCCe--EecCCEEecccchHHhhCCCcccchhe
Confidence            378999999999999974479999999999999999999999999998876  44688999999999887664311    


Q ss_pred             -----------------------------------chhhcCchHHH----HHHHHHHhcchhhhHHHHHhcccccCCCCe
Q 041250           77 -----------------------------------EYAGDESKLNN----FFNEAMASDARLATSVMIQKCKNVFEGLNS  117 (259)
Q Consensus        77 -----------------------------------~~l~~~~~~~~----~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~  117 (259)
                                                         +|+.++|+..+    .|...|....   ...+++.+.  ..+..+
T Consensus       108 ~~~~~~~~~~~~L~~~lr~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~---~~~~l~~~~--~~~~~~  182 (363)
T 3dp7_A          108 FNHDVNYQGLFHLEEALLNGRPEGLKVFGEWPTIYEGLSQLPEQVQKSWFGFDHFYSDQS---FGKALEIVF--SHHPKR  182 (363)
T ss_dssp             HHHHTTHHHHTTHHHHHHHSSCGGGGGTCCCSSHHHHGGGSCHHHHHHHHHHHHHTTCCC---CHHHHHHHG--GGCCSE
T ss_pred             eecHHhhhhHHHHHHHHhcCCCccccccCchHhHHHHHhhCHHHHHHHHHHHHHHhhhhh---HHHHHHHhc--ccCCCE
Confidence                                               33445666554    2445554332   233444444  356789


Q ss_pred             EEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhccc------CCCCeEEEeCCCCCC---CC-CccEEeehhhhccCC
Q 041250          118 LVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES------DLVNLKYVGGDMFKA---IS-PAYAVLLKWILLDWN  187 (259)
Q Consensus       118 vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~d~~~~---~~-~~D~~~~~~vlh~~~  187 (259)
                      |||||||+|.++..+++++|+++++++|+|.+++.|++      ..+||+++.+|++++   +| +||+|++++++|+|+
T Consensus       183 vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~~~vlh~~~  262 (363)
T 3dp7_A          183 LLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMSQFLDCFS  262 (363)
T ss_dssp             EEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEEEESCSTTSC
T ss_pred             EEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcCEEEEechhhhCC
Confidence            99999999999999999999999999999999998886      236899999999984   56 699999999999999


Q ss_pred             hHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhh-hhhhhhhhhhhhccCccccCHHHHHHHHhcC
Q 041250          188 DEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSI-ETQLFFEMFMMVLLTGTERDEKEWAKIFADS  259 (259)
Q Consensus       188 d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~-~~~~~~d~~m~~~~~g~~rt~~e~~~ll~~a  259 (259)
                      ++++.++|++++++|+|   ||+|+|+|.+.++....+... ......++.|+...++++||.+||+++|++|
T Consensus       263 ~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~A  332 (363)
T 3dp7_A          263 EEEVISILTRVAQSIGK---DSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENA  332 (363)
T ss_dssp             HHHHHHHHHHHHHHCCT---TCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCC---CcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHHc
Confidence            99999999999999999   999999999888765432100 1112344455555688999999999999876

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=100.00  E-value=9.8e-39  Score=281.95  Aligned_cols=245  Identities=16%  Similarity=0.196  Sum_probs=208.1

Q ss_pred             CHHHHHHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhhh-hhhcCCCCC---
Q 041250            1 MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASK-LLLKDNPLS---   76 (259)
Q Consensus         1 ~aL~~a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~~-~l~~~~~~~---   76 (259)
                      ++|++|+++|||++|.   +|.|++|||+++|++++.+.|+|+.+...+++  +..++.|.+|+.++ +|.++++.+   
T Consensus        39 ~~l~~a~~lgif~~l~---~~~t~~elA~~~~~~~~~l~rlLr~L~~~gll--~~~~~~y~~t~~s~~~l~~~~~~~~~~  113 (352)
T 3mcz_A           39 AILHYAVADKLFDLTQ---TGRTPAEVAASFGMVEGKAAILLHALAALGLL--TKEGDAFRNTALTERYLTTTSADYIGP  113 (352)
T ss_dssp             HHHHHHHHTTHHHHTT---SCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSE--EEETTEEEECHHHHHHHSTTCTTCCHH
T ss_pred             HHHHHHHHCChHHHhC---CCCCHHHHHHHhCcChHHHHHHHHHHHHCCCe--EecCCeeecCHHHHhhccCCChhhHHH
Confidence            3799999999999997   49999999999999999999999999988875  44557899999997 666665532   


Q ss_pred             ----------------c--------------hhhcCchHHHHHHHHHHhcchhhhHHHHHhcccccCC-CCeEEEecCCc
Q 041250           77 ----------------E--------------YAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEG-LNSLVDVGGGT  125 (259)
Q Consensus        77 ----------------~--------------~l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~-~~~vlDvGgG~  125 (259)
                                      +              ++..+|+..+.|.++|...... ...+++.++  +.+ ..+|||||||+
T Consensus       114 ~~~~~~~~~~~~~~l~~~l~~g~~~~f~~~~~~~~~~~~~~~f~~~m~~~~~~-~~~~l~~~~--~~~~~~~vlDvG~G~  190 (352)
T 3mcz_A          114 IVEHQYLQWDNWPRLGEILRSEKPLAFQQESRFAHDTRARDAFNDAMVRLSQP-MVDVVSELG--VFARARTVIDLAGGH  190 (352)
T ss_dssp             HHHHHHTTTTTGGGHHHHHTCSSCCTTSHHHHTTTCHHHHHHHHHHHHHHHHH-HHHHHHTCG--GGTTCCEEEEETCTT
T ss_pred             HHHHhHHHHHHHHHHHHHHhCCCCCCcccccccccCHHHHHHHHHHHHhhhhh-HHHHHHhCC--CcCCCCEEEEeCCCc
Confidence                            1              1235677788899999873222 236788888  665 89999999999


Q ss_pred             hHHHHHHHHHCCCCeEEEeechHHHhhccc------CCCCeEEEeCCCCCC---CC-CccEEeehhhhccCChHHHHHHH
Q 041250          126 GTAAKAIAKAFPKLECTCFDLPHVVNGLES------DLVNLKYVGGDMFKA---IS-PAYAVLLKWILLDWNDEECVKIL  195 (259)
Q Consensus       126 G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~d~~~~---~~-~~D~~~~~~vlh~~~d~~~~~il  195 (259)
                      |.++..+++++|+++++++|+|.+++.+++      ..+|++++.+|++++   .+ +||+|++++++|+|+++++.++|
T Consensus       191 G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~vlh~~~~~~~~~~l  270 (352)
T 3mcz_A          191 GTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDCLHYFDAREAREVI  270 (352)
T ss_dssp             CHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEESCGGGSCHHHHHHHH
T ss_pred             CHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEecccccCCHHHHHHHH
Confidence            999999999999999999999999988876      346899999999984   55 49999999999999999999999


Q ss_pred             HHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhcc-CccccCHHHHHHHHhcC
Q 041250          196 KKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLL-TGTERDEKEWAKIFADS  259 (259)
Q Consensus       196 ~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~-~g~~rt~~e~~~ll~~a  259 (259)
                      ++++++|+|   ||+++|+|.+.++....+   ....++|+.|+..+ +|++||.+||++++++|
T Consensus       271 ~~~~~~L~p---gG~l~i~e~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~a  329 (352)
T 3mcz_A          271 GHAAGLVKP---GGALLILTMTMNDDRVTP---ALSADFSLHMMVNTNHGELHPTPWIAGVVRDA  329 (352)
T ss_dssp             HHHHHTEEE---EEEEEEEEECCCTTSSSS---HHHHHHHHHHHHHSTTCCCCCHHHHHHHHHHT
T ss_pred             HHHHHHcCC---CCEEEEEEeccCCCCCCC---chHHHhhHHHHhhCCCCCcCCHHHHHHHHHHC
Confidence            999999999   999999999998876554   34578999998765 89999999999999875

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=100.00  E-value=3e-38  Score=281.15  Aligned_cols=254  Identities=29%  Similarity=0.504  Sum_probs=210.9

Q ss_pred             CHHHHHHHcCcchhhhcCCCC---CCHHHHHHHcCC------CccccccceeccccccCCCCC----CC---CceeecCH
Q 041250            1 MTLKCAFQLGIPDIINKHGKP---MTLNELVSALTI------NLSKTQCFFAQQKLVSSGNNN----DE---EQGYVLTN   64 (259)
Q Consensus         1 ~aL~~a~~l~lf~~L~~~~~~---~t~~elA~~~~~------~~~~l~~ll~~~~~~~~~~~~----~~---~~~y~~t~   64 (259)
                      ++|++|+++|||+.|++.++|   .|++|||+++|+      +++.+.|+|+.+...+++...    .+   ++.|.+|+
T Consensus        39 ~~l~~a~~lgif~~L~~~g~pg~~~t~~eLA~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~g~~~~~y~~t~  118 (372)
T 1fp1_D           39 AVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSM  118 (372)
T ss_dssp             HHHHHHHHTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECT
T ss_pred             HHHHHHHHCChHHHHHhcCCCCCCcCHHHHHHhcCCCCCCCcChHHHHHHHHHHhhCCceEecccccCCCCcCCeEecCH
Confidence            478999999999999973216   999999999999      678999999999988876322    11   36999999


Q ss_pred             hhhhhhcCCC-CC-----------------------------------------chhhcCchHHHHHHHHHHhcchhhhH
Q 041250           65 ASKLLLKDNP-LS-----------------------------------------EYAGDESKLNNFFNEAMASDARLATS  102 (259)
Q Consensus        65 ~~~~l~~~~~-~~-----------------------------------------~~l~~~~~~~~~f~~~m~~~~~~~~~  102 (259)
                      .+++|+++++ .+                                         +|+..+|+..+.|.++|...+....+
T Consensus       119 ~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~  198 (372)
T 1fp1_D          119 VGKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMK  198 (372)
T ss_dssp             TGGGGSTTCTTCCCTHHHHHHTCHHHHHHHTTHHHHHHSCC--------------CCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCCCCHHHHHHHhcCchHHHHHHHHHHHHHcCCCChhHHHhCCCHHHHHHhCHHHHHHHHHHHHhhhHHHHH
Confidence            9998887654 11                                         12234566777899999887776667


Q ss_pred             HHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhcccCCCCeEEEeCCCCCCCCCccEEeehhh
Q 041250          103 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWI  182 (259)
Q Consensus       103 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~~~~~~D~~~~~~v  182 (259)
                      .+++.++ .+++..+|||||||+|.++..+++++|+++++++|+|.+++.+++ .++++++.+|+++++|.+|+|+++++
T Consensus       199 ~l~~~~~-~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~-~~~v~~~~~d~~~~~~~~D~v~~~~~  276 (372)
T 1fp1_D          199 RMLEIYT-GFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPP-LSGIEHVGGDMFASVPQGDAMILKAV  276 (372)
T ss_dssp             HHHHHCC-TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCC-CTTEEEEECCTTTCCCCEEEEEEESS
T ss_pred             HHHHHhh-ccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHhhhh-cCCCEEEeCCcccCCCCCCEEEEecc
Confidence            7888875 256778999999999999999999999999999999999999885 46799999999998778999999999


Q ss_pred             hccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccCHHHHHHHHhcC
Q 041250          183 LLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAKIFADS  259 (259)
Q Consensus       183 lh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~e~~~ll~~a  259 (259)
                      +|+|+++++.++|++++++|+|   ||+++|.|.+.++....+........+|+.|+...+|++||.+||++++++|
T Consensus       277 lh~~~d~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~a  350 (372)
T 1fp1_D          277 CHNWSDEKCIEFLSNCHKALSP---NGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLS  350 (372)
T ss_dssp             GGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHT
T ss_pred             cccCCHHHHHHHHHHHHHhcCC---CCEEEEEEeccCCCCccchHHHHHHHhhHHHHhccCCccCCHHHHHHHHHHC
Confidence            9999999999999999999999   9999999999887654321111356788888876689999999999999875

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=100.00  E-value=3.4e-37  Score=270.07  Aligned_cols=247  Identities=18%  Similarity=0.226  Sum_probs=212.7

Q ss_pred             CHHHHHHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhh-hhhhcCCCCC---
Q 041250            1 MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNAS-KLLLKDNPLS---   76 (259)
Q Consensus         1 ~aL~~a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~-~~l~~~~~~~---   76 (259)
                      ++|++++++|||+.|++  +|.|++|||+++|++++.++|+|+.+...+++  +.+++.|++|+.+ ++|.++++.+   
T Consensus        21 ~~l~~~~~l~i~~~l~~--~~~t~~ela~~~~~~~~~l~r~L~~L~~~g~l--~~~~~~y~~t~~~~~~l~~~~~~~~~~   96 (335)
T 2r3s_A           21 AAIKAAVELNVFTAISQ--GIESSQSLAQKCQTSERGMRMLCDYLVIIGFM--TKQAEGYRLTSDSAMFLDRQSKFYVGD   96 (335)
T ss_dssp             HHHHHHHHTTHHHHHTT--SEECHHHHHHHHTCCHHHHHHHHHHHHHTTSE--EEETTEEEECHHHHHHTCTTSTTCCGG
T ss_pred             HHHHHHHHcChHHHHhc--CCCCHHHHHHHhCCCchHHHHHHHHHHhcCCe--EecCCEEecCHHHHHHhccCCcHHHHH
Confidence            37899999999999996  89999999999999999999999999998876  4467899999999 6787765422   


Q ss_pred             -------------------------------chhhcCchHHHHHHHHHHhcchhhhHHHHHhccccc--CCCCeEEEecC
Q 041250           77 -------------------------------EYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVF--EGLNSLVDVGG  123 (259)
Q Consensus        77 -------------------------------~~l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~--~~~~~vlDvGg  123 (259)
                                                     +++..+|+....|.+.|..........+++.++  +  .+..+||||||
T Consensus        97 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~vlDvG~  174 (335)
T 2r3s_A           97 AIEFLLSPMITNGFNDLTAAVLKGGTAISSEGTLSPEHPVWVQFAKAMSPMMANPAQLIAQLVN--ENKIEPLKVLDISA  174 (335)
T ss_dssp             GHHHHTCHHHHGGGTTHHHHHHHTSCCSTTTGGGSTTCTHHHHHHHHSGGGGHHHHHHHHHHHT--C--CCCSEEEEETC
T ss_pred             HHHHhcchhhHHHHHhHHHHHhcCCCCCCCcccccCCHHHHHHHHHHHHHHHhhhHHHHHHhcc--cccCCCCEEEEECC
Confidence                                           112345777888888888877766777888888  5  77889999999


Q ss_pred             CchHHHHHHHHHCCCCeEEEeechHHHhhccc------CCCCeEEEeCCCCC-CCC-CccEEeehhhhccCChHHHHHHH
Q 041250          124 GTGTAAKAIAKAFPKLECTCFDLPHVVNGLES------DLVNLKYVGGDMFK-AIS-PAYAVLLKWILLDWNDEECVKIL  195 (259)
Q Consensus       124 G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~d~~~-~~~-~~D~~~~~~vlh~~~d~~~~~il  195 (259)
                      |+|.++..+++++|+.+++++|++.+++.+++      ..+|++++.+|+++ +.+ +||+|++++++|+|+++++.++|
T Consensus       175 G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~l  254 (335)
T 2r3s_A          175 SHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEVDYGNDYDLVLLPNFLHHFDVATCEQLL  254 (335)
T ss_dssp             TTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSCEEEEEEESCGGGSCHHHHHHHH
T ss_pred             CcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCcEEEEcchhccCCHHHHHHHH
Confidence            99999999999999999999999988888876      25689999999998 666 49999999999999999999999


Q ss_pred             HHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhcc-CccccCHHHHHHHHhcC
Q 041250          196 KKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLL-TGTERDEKEWAKIFADS  259 (259)
Q Consensus       196 ~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~-~g~~rt~~e~~~ll~~a  259 (259)
                      ++++++|+|   ||+++|+|...++....+   .....+|+.|+... +++.+|.++|++++++|
T Consensus       255 ~~~~~~L~p---gG~l~i~e~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~a  313 (335)
T 2r3s_A          255 RKIKTALAV---EGKVIVFDFIPNSDRITP---PDAAAFSLVMLATTPNGDAYTFAEYESMFSNA  313 (335)
T ss_dssp             HHHHHHEEE---EEEEEEEECCCCTTSSCS---HHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHT
T ss_pred             HHHHHhCCC---CcEEEEEeecCCCCcCCc---hHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHC
Confidence            999999999   999999999988765443   34568889888876 89999999999999875

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=100.00  E-value=9.3e-37  Score=270.18  Aligned_cols=244  Identities=19%  Similarity=0.308  Sum_probs=207.3

Q ss_pred             CHHHHHHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHh-hhhhhcCCC---CC
Q 041250            1 MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNA-SKLLLKDNP---LS   76 (259)
Q Consensus         1 ~aL~~a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~-~~~l~~~~~---~~   76 (259)
                      ++|++++++|||+.|++  +|.|++|||+++|++++.++|+|+.+...+++  +..++.|++|+. +++|.++++   .+
T Consensus        46 ~~l~~a~~lgif~~L~~--~~~t~~eLA~~~g~~~~~l~rlLr~L~~~gll--~~~~~~y~~t~~~~~~l~~~~~~~~~~  121 (359)
T 1x19_A           46 SCMKAAIELDLFSHMAE--GPKDLATLAADTGSVPPRLEMLLETLRQMRVI--NLEDGKWSLTEFADYMFSPTPKEPNLH  121 (359)
T ss_dssp             HHHHHHHHHTHHHHHTT--CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSE--EEETTEEEECHHHHHHSSSSCSBTTBC
T ss_pred             HHHHHHHHcCcHHHHcC--CCCCHHHHHHHhCcChHHHHHHHHHHHhCCCe--EeeCCeEecCHHHHHHhcCCCCCcccc
Confidence            37899999999999996  89999999999999999999999999998876  444579999997 457777665   22


Q ss_pred             -----------------------------chhhcCch---HHHHHHHHHHhcch-hhhHHHHHhcccccCCCCeEEEecC
Q 041250           77 -----------------------------EYAGDESK---LNNFFNEAMASDAR-LATSVMIQKCKNVFEGLNSLVDVGG  123 (259)
Q Consensus        77 -----------------------------~~l~~~~~---~~~~f~~~m~~~~~-~~~~~~~~~~~~~~~~~~~vlDvGg  123 (259)
                                                   +|+..+|+   ..+.|...|...+. ...+.+++.++  +.+..+||||||
T Consensus       122 ~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~p~~~~~~~~f~~~m~~~~~~~~~~~l~~~~~--~~~~~~vLDvG~  199 (359)
T 1x19_A          122 QTPVAKAMAFLADDFYMGLSQAVRGQKNFKGQVPYPPVTREDNLYFEEIHRSNAKFAIQLLLEEAK--LDGVKKMIDVGG  199 (359)
T ss_dssp             CHHHHHHHHHHHHHTGGGHHHHHTTSCCCCCSSCSSCCSHHHHHHHHHHHHTTCHHHHHHHHHHCC--CTTCCEEEEESC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccCchhhHHHHHHHHHHHHhccchhHHHHHHhcC--CCCCCEEEEECC
Confidence                                         23446788   89999999999887 77788888888  778899999999


Q ss_pred             CchHHHHHHHHHCCCCeEEEeechHHHhhccc------CCCCeEEEeCCCCC-CCCCccEEeehhhhccCChHHHHHHHH
Q 041250          124 GTGTAAKAIAKAFPKLECTCFDLPHVVNGLES------DLVNLKYVGGDMFK-AISPAYAVLLKWILLDWNDEECVKILK  196 (259)
Q Consensus       124 G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~d~~~-~~~~~D~~~~~~vlh~~~d~~~~~il~  196 (259)
                      |+|.++..+++++|+.+++++|+|.+++.+++      ..+|++++.+|+++ +.+++|+|++++++|+|+++++.++|+
T Consensus       200 G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~  279 (359)
T 1x19_A          200 GIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCK  279 (359)
T ss_dssp             TTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCCCSEEEEESCGGGSCHHHHHHHHH
T ss_pred             cccHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCCCCEEEEechhccCCHHHHHHHHH
Confidence            99999999999999999999999999988876      35689999999998 666679999999999999999999999


Q ss_pred             HHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhc-cCccc----cCHHHHHHHHhcC
Q 041250          197 KCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVL-LTGTE----RDEKEWAKIFADS  259 (259)
Q Consensus       197 ~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~-~~g~~----rt~~e~~~ll~~a  259 (259)
                      +++++|+|   ||+++|+|...++. ..+   ....++  .|+.. .+|++    ++.+||++++++|
T Consensus       280 ~~~~~L~p---gG~l~i~e~~~~~~-~~~---~~~~~~--~~~~~~~~g~~~~~~~t~~e~~~ll~~a  338 (359)
T 1x19_A          280 KAFDAMRS---GGRLLILDMVIDDP-ENP---NFDYLS--HYILGAGMPFSVLGFKEQARYKEILESL  338 (359)
T ss_dssp             HHHTTCCT---TCEEEEEEECCCCT-TSC---CHHHHH--HHGGGGGSSCCCCCCCCGGGHHHHHHHH
T ss_pred             HHHHhcCC---CCEEEEEecccCCC-CCc---hHHHHH--HHHHhcCCCCcccCCCCHHHHHHHHHHC
Confidence            99999999   99999999998766 322   122333  44443 45778    9999999999864

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=100.00  E-value=8.1e-37  Score=271.68  Aligned_cols=247  Identities=23%  Similarity=0.350  Sum_probs=203.3

Q ss_pred             CHHHHHHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCc--eeecCHhhhhhhcCCCCC--
Q 041250            1 MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQ--GYVLTNASKLLLKDNPLS--   76 (259)
Q Consensus         1 ~aL~~a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~--~y~~t~~~~~l~~~~~~~--   76 (259)
                      ++|.+++++|||+.|..  +|.|++|||+++|++++.++|+|+.+...+++. +..++  .|.+|+.+++|+.+++.+  
T Consensus        31 ~~l~~~~~l~i~~~l~~--~~~t~~eLA~~~g~~~~~l~r~Lr~L~~~Gll~-~~~~~~~~y~~t~~s~~l~~~~~~~~~  107 (374)
T 1qzz_A           31 MALRVAATLRLVDHLLA--GADTLAGLADRTDTHPQALSRLVRHLTVVGVLE-GGEKQGRPLRPTRLGMLLADGHPAQQR  107 (374)
T ss_dssp             HHHHHHHHTTHHHHHHT--TCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEE-CCCC-CCCCEECTTGGGGSTTCTTCHH
T ss_pred             HHHHHHHHcChHHHHhC--CCCCHHHHHHHhCcCHHHHHHHHHHHhhCCCEE-EeCCCCeEEEEChHHHhhcCCCcccHH
Confidence            37899999999999975  899999999999999999999999999888752 33556  899999998887765422  


Q ss_pred             ---------------------------------------chhhcCchHHHHHHHHHHhcchhhhHHHHHhcccccCCCCe
Q 041250           77 ---------------------------------------EYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNS  117 (259)
Q Consensus        77 ---------------------------------------~~l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~  117 (259)
                                                             +++.++|+....|.++|........+.+++.++  +.+..+
T Consensus       108 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~--~~~~~~  185 (374)
T 1qzz_A          108 AWLDLNGAVSHADLAFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD--WSAVRH  185 (374)
T ss_dssp             HHHCTTSHHHHHHGGGGGHHHHHHHSCCSHHHHHSSCHHHHHHHCHHHHHHHHHTCGGGSTTTTHHHHHTSC--CTTCCE
T ss_pred             HHHHHcCChhhHHHHHHHHHHHHhcCCChhhhhhCCCHHHHHhhChHHHHHHHHHHHHhhHhHHHHHHHhCC--CCCCCE
Confidence                                                   112235556666777777666666677888887  777889


Q ss_pred             EEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhccc------CCCCeEEEeCCCCCCCC-CccEEeehhhhccCChHH
Q 041250          118 LVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES------DLVNLKYVGGDMFKAIS-PAYAVLLKWILLDWNDEE  190 (259)
Q Consensus       118 vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~d~~~~~~-~~D~~~~~~vlh~~~d~~  190 (259)
                      |||||||+|.++..+++++|+++++++|++.+++.+++      ..++++++.+|+++++| +||+|++++++|+|++++
T Consensus       186 vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vl~~~~~~~  265 (374)
T 1qzz_A          186 VLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLNWSDED  265 (374)
T ss_dssp             EEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEESCGGGSCHHH
T ss_pred             EEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcCCCCceEEEeCCCCCcCCCCCCEEEEeccccCCCHHH
Confidence            99999999999999999999999999999999988876      33599999999998777 499999999999999999


Q ss_pred             HHHHHHHHHHhcccCCCCcEEEEEee--eecCCCCCchhhhhhhhhhhhhhhccCccccCHHHHHHHHhcC
Q 041250          191 CVKILKKCKEAITRDGKKRKVIIKDM--IKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAKIFADS  259 (259)
Q Consensus       191 ~~~il~~~~~~L~p~~~gg~lli~e~--~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~e~~~ll~~a  259 (259)
                      +.++|++++++|+|   ||+++|+|.  +.++....    .....+|+.|+...+|+.++.++|++++++|
T Consensus       266 ~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~a  329 (374)
T 1qzz_A          266 ALTILRGCVRALEP---GGRLLVLDRADVEGDGADR----FFSTLLDLRMLTFMGGRVRTRDEVVDLAGSA  329 (374)
T ss_dssp             HHHHHHHHHHHEEE---EEEEEEEECCH-------H----HHHHHHHHHHHHHHSCCCCCHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhcCC---CcEEEEEechhhcCCCCCc----chhhhcchHHHHhCCCcCCCHHHHHHHHHHC
Confidence            99999999999999   999999999  77654322    3346788888887899999999999999875

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=100.00  E-value=1.4e-36  Score=268.93  Aligned_cols=247  Identities=24%  Similarity=0.404  Sum_probs=209.7

Q ss_pred             CHHHHHHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhhhhhhcCCCCC----
Q 041250            1 MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASKLLLKDNPLS----   76 (259)
Q Consensus         1 ~aL~~a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~~~l~~~~~~~----   76 (259)
                      ++|.+++++|||+.|.+  +|.|++|||+++|+++..++|+|+.+...+++. +..++.|.+|+.+++|+.+++.+    
T Consensus        34 ~~l~~~~~l~i~~~l~~--~~~t~~ela~~~~~~~~~l~r~L~~L~~~g~~~-~~~~g~y~~t~~s~~l~~~~~~~~~~~  110 (360)
T 1tw3_A           34 MVVRTAATLRLVDHILA--GARTVKALAARTDTRPEALLRLIRHLVAIGLLE-EDAPGEFVPTEVGELLADDHPAAQRAW  110 (360)
T ss_dssp             HHHHHHHHTTHHHHHHT--TCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEE-EEETTEEEECTTGGGGSTTSTTCHHHH
T ss_pred             HHHHHHHHhCHHHHHhC--CCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCEE-ecCCCeEEeCHHHHHHhcCCchhHHHH
Confidence            37899999999999975  899999999999999999999999998887652 33668999999998887765422    


Q ss_pred             -------------------------------------chhhcCchHHHHHHHHHHhcchhhhHHHHHhcccccCCCCeEE
Q 041250           77 -------------------------------------EYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLV  119 (259)
Q Consensus        77 -------------------------------------~~l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vl  119 (259)
                                                           +++..+|+....|...|...+....+.+++.++  +.+..+||
T Consensus       111 ~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~p~~~~~f~~~~~~~~~~~~~~l~~~~~--~~~~~~vL  188 (360)
T 1tw3_A          111 HDLTQAVARADISFTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD--WTNVRHVL  188 (360)
T ss_dssp             TCTTSHHHHHGGGGGGHHHHHHHCCCCHHHHHSSCHHHHHHTCHHHHHHHHHHHTTTTTTTTHHHHHHSC--CTTCSEEE
T ss_pred             HHHhcCchhHHHHHHHHHHHHHcCCCHHHHhcCCCHHHHHHhChHHHHHHHHHHHHHHHHhHHHHHHhCC--CccCcEEE
Confidence                                                 112235566677888888777766788888888  77788999


Q ss_pred             EecCCchHHHHHHHHHCCCCeEEEeechHHHhhccc------CCCCeEEEeCCCCCCCC-CccEEeehhhhccCChHHHH
Q 041250          120 DVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES------DLVNLKYVGGDMFKAIS-PAYAVLLKWILLDWNDEECV  192 (259)
Q Consensus       120 DvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~d~~~~~~-~~D~~~~~~vlh~~~d~~~~  192 (259)
                      |||||+|.++..+++++|+++++++|++.+++.+++      ..++++++.+|+++++| +||+|++++++|+|+++++.
T Consensus       189 DvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vl~~~~~~~~~  268 (360)
T 1tw3_A          189 DVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDAV  268 (360)
T ss_dssp             EETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEEESCGGGSCHHHHH
T ss_pred             EeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCCCCceEEEeCCCCCCCCCCccEEEEcccccCCCHHHHH
Confidence            999999999999999999999999999999988876      34599999999998776 49999999999999999999


Q ss_pred             HHHHHHHHhcccCCCCcEEEEEeee-ecCCCCCchhhhhhhhhhhhhhhccCccccCHHHHHHHHhcC
Q 041250          193 KILKKCKEAITRDGKKRKVIIKDMI-KENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAKIFADS  259 (259)
Q Consensus       193 ~il~~~~~~L~p~~~gg~lli~e~~-~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~e~~~ll~~a  259 (259)
                      ++|++++++|+|   ||+++|.|.. .++....    .....+|+.|+...+++.+|.++|++++++|
T Consensus       269 ~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~a  329 (360)
T 1tw3_A          269 RILTRCAEALEP---GGRILIHERDDLHENSFN----EQFTELDLRMLVFLGGALRTREKWDGLAASA  329 (360)
T ss_dssp             HHHHHHHHTEEE---EEEEEEEECCBCGGGCCS----HHHHHHHHHHHHHHSCCCCBHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCC---CcEEEEEEEeccCCCCCc----chhhhccHHHhhhcCCcCCCHHHHHHHHHHC
Confidence            999999999999   9999999998 6654332    2345788888877899999999999999875

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.81  E-value=7.4e-19  Score=148.75  Aligned_cols=108  Identities=16%  Similarity=0.238  Sum_probs=96.8

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHC--CCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-CCCCccEEeehh
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAF--PKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AISPAYAVLLKW  181 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~~~D~~~~~~  181 (259)
                      .++..+|||||||+|.++..++++.  |+++++++|+ +.+++.|++      ...+|+++++|+.+ +.+++|+|++..
T Consensus        68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~  147 (261)
T 4gek_A           68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNF  147 (261)
T ss_dssp             CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEES
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeee
Confidence            4667899999999999999999975  6789999999 899999886      35689999999998 777899999999


Q ss_pred             hhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCC
Q 041250          182 ILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRK  222 (259)
Q Consensus       182 vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~  222 (259)
                      ++|++++++...+|++++++|+|   ||++++.|...+++.
T Consensus       148 ~l~~~~~~~~~~~l~~i~~~Lkp---GG~lii~e~~~~~~~  185 (261)
T 4gek_A          148 TLQFLEPSERQALLDKIYQGLNP---GGALVLSEKFSFEDA  185 (261)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEBCCSSH
T ss_pred             eeeecCchhHhHHHHHHHHHcCC---CcEEEEEeccCCCCH
Confidence            99999998888999999999999   999999998876653

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.75  E-value=3.9e-17  Score=135.19  Aligned_cols=152  Identities=13%  Similarity=0.179  Sum_probs=113.7

Q ss_pred             HHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEeCCCCC-CCC-CccE
Q 041250          103 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFK-AIS-PAYA  176 (259)
Q Consensus       103 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~-~~~-~~D~  176 (259)
                      .+++.+. ...+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++   ...+++++.+|+.+ +.+ .||+
T Consensus        34 ~~~~~~~-~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~  112 (234)
T 3dtn_A           34 VSVSIAS-VDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDM  112 (234)
T ss_dssp             HHHHTCC-CSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCEEE
T ss_pred             HHHHHhh-cCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCceE
Confidence            3444443 134568999999999999999999999999999999 889988877   33499999999998 544 5999


Q ss_pred             EeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhh-----------hh--hhccC
Q 041250          177 VLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEM-----------FM--MVLLT  243 (259)
Q Consensus       177 ~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~-----------~m--~~~~~  243 (259)
                      |++..++|++++.+...+|++++++|+|   ||++++.+...+........ ....+...           ..  -....
T Consensus       113 v~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (234)
T 3dtn_A          113 VVSALSIHHLEDEDKKELYKRSYSILKE---SGIFINADLVHGETAFIENL-NKTIWRQYVENSGLTEEEIAAGYERSKL  188 (234)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEECBCSSHHHHHH-HHHHHHHHHHTSSCCHHHHHTTC----C
T ss_pred             EEEeCccccCCHHHHHHHHHHHHHhcCC---CcEEEEEEecCCCChhhhhH-HHHHHHHHHHhcCCCHHHHHHHHHhccc
Confidence            9999999999998888899999999999   99999999877654321100 00001000           00  00124


Q ss_pred             ccccCHHHHHHHHhcC
Q 041250          244 GTERDEKEWAKIFADS  259 (259)
Q Consensus       244 g~~rt~~e~~~ll~~a  259 (259)
                      ...+|.++|.+++++|
T Consensus       189 ~~~~~~~~~~~ll~~a  204 (234)
T 3dtn_A          189 DKDIEMNQQLNWLKEA  204 (234)
T ss_dssp             CCCCBHHHHHHHHHHT
T ss_pred             ccccCHHHHHHHHHHc
Confidence            4567899999999876

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.71  E-value=2e-16  Score=134.74  Aligned_cols=135  Identities=16%  Similarity=0.227  Sum_probs=108.0

Q ss_pred             CCCeEEEecCCc---hHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEeCCCCCC------------C--C
Q 041250          114 GLNSLVDVGGGT---GTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFKA------------I--S  172 (259)
Q Consensus       114 ~~~~vlDvGgG~---G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~~------------~--~  172 (259)
                      +..+|||||||+   |.++..+.+.+|+.+++++|+ |.+++.+++   ..++++++.+|++++            +  .
T Consensus        77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~  156 (274)
T 2qe6_A           77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDFS  156 (274)
T ss_dssp             CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCTT
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCCC
Confidence            457999999999   999888888899999999999 899999887   357999999999862            2  2


Q ss_pred             CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccCHHHH
Q 041250          173 PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEW  252 (259)
Q Consensus       173 ~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~e~  252 (259)
                      .+|++++..+||++++++...+|++++++|+|   ||+|++.+...+.   ..   ......+.+.........|+.+||
T Consensus       157 ~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~p---GG~l~i~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~s~~ei  227 (274)
T 2qe6_A          157 RPAAIMLVGMLHYLSPDVVDRVVGAYRDALAP---GSYLFMTSLVDTG---LP---AQQKLARITRENLGEGWARTPEEI  227 (274)
T ss_dssp             SCCEEEETTTGGGSCTTTHHHHHHHHHHHSCT---TCEEEEEEEBCSS---CH---HHHHHHHHHHHHHSCCCCBCHHHH
T ss_pred             CCEEEEEechhhhCCcHHHHHHHHHHHHhCCC---CcEEEEEEecCcc---hH---HHHHHHHHHHhcCCCCccCCHHHH
Confidence            58999999999999998888999999999999   9999999976532   11   112233333222235677999999


Q ss_pred             HHHHh
Q 041250          253 AKIFA  257 (259)
Q Consensus       253 ~~ll~  257 (259)
                      +++|.
T Consensus       228 ~~~l~  232 (274)
T 2qe6_A          228 ERQFG  232 (274)
T ss_dssp             HHTTT
T ss_pred             HHHhC
Confidence            99874

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.70  E-value=2.1e-16  Score=132.79  Aligned_cols=145  Identities=14%  Similarity=0.210  Sum_probs=113.1

Q ss_pred             HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccC---CCCeEEEeCCCCC-CCC--Cc
Q 041250          102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESD---LVNLKYVGGDMFK-AIS--PA  174 (259)
Q Consensus       102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~ri~~~~~d~~~-~~~--~~  174 (259)
                      ..+++.++  .....+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++.   .++++++.+|+.+ +.+  .|
T Consensus        45 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f  121 (266)
T 3ujc_A           45 KKILSDIE--LNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNF  121 (266)
T ss_dssp             HHHTTTCC--CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCE
T ss_pred             HHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcE
Confidence            44455555  5667899999999999999999987 679999999 8888888872   2799999999988 554  59


Q ss_pred             cEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccCHHHHHH
Q 041250          175 YAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAK  254 (259)
Q Consensus       175 D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~e~~~  254 (259)
                      |+|++.+++|++++++...+|++++++|+|   ||++++.++..+......      ..+.- .....+...++.++|.+
T Consensus       122 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~~~~~~~  191 (266)
T 3ujc_A          122 DLIYSRDAILALSLENKNKLFQKCYKWLKP---TGTLLITDYCATEKENWD------DEFKE-YVKQRKYTLITVEEYAD  191 (266)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEEESCGGGCC------HHHHH-HHHHHTCCCCCHHHHHH
T ss_pred             EEEeHHHHHHhcChHHHHHHHHHHHHHcCC---CCEEEEEEeccCCcccch------HHHHH-HHhcCCCCCCCHHHHHH
Confidence            999999999999888889999999999999   999999998776522211      01111 11112445678999999


Q ss_pred             HHhcC
Q 041250          255 IFADS  259 (259)
Q Consensus       255 ll~~a  259 (259)
                      +++++
T Consensus       192 ~l~~~  196 (266)
T 3ujc_A          192 ILTAC  196 (266)
T ss_dssp             HHHHT
T ss_pred             HHHHc
Confidence            88764

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.70  E-value=3.6e-16  Score=132.28  Aligned_cols=146  Identities=16%  Similarity=0.114  Sum_probs=113.7

Q ss_pred             HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-CCC-
Q 041250          102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AIS-  172 (259)
Q Consensus       102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~-  172 (259)
                      ..+++.++  .....+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++      ..++++++.+|+.+ +++ 
T Consensus        51 ~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~  127 (273)
T 3bus_A           51 DEMIALLD--VRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFED  127 (273)
T ss_dssp             HHHHHHSC--CCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCT
T ss_pred             HHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCC
Confidence            44566666  6677899999999999999999987 679999999 888887775      34689999999988 655 


Q ss_pred             -CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccCHHH
Q 041250          173 -PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKE  251 (259)
Q Consensus       173 -~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~e  251 (259)
                       .||+|++..++|++++.  ..+|++++++|+|   ||++++.+.........    .....++........+..++.++
T Consensus       128 ~~fD~v~~~~~l~~~~~~--~~~l~~~~~~L~p---gG~l~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  198 (273)
T 3bus_A          128 ASFDAVWALESLHHMPDR--GRALREMARVLRP---GGTVAIADFVLLAPVEG----AKKEAVDAFRAGGGVLSLGGIDE  198 (273)
T ss_dssp             TCEEEEEEESCTTTSSCH--HHHHHHHHTTEEE---EEEEEEEEEEESSCCCH----HHHHHHHHHHHHHTCCCCCCHHH
T ss_pred             CCccEEEEechhhhCCCH--HHHHHHHHHHcCC---CeEEEEEEeeccCCCCh----hHHHHHHHHHhhcCccCCCCHHH
Confidence             49999999999999875  5899999999999   99999999877643322    11112222222223667889999


Q ss_pred             HHHHHhcC
Q 041250          252 WAKIFADS  259 (259)
Q Consensus       252 ~~~ll~~a  259 (259)
                      |.++++++
T Consensus       199 ~~~~l~~a  206 (273)
T 3bus_A          199 YESDVRQA  206 (273)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHc
Confidence            99998864

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.69  E-value=2.3e-16  Score=132.69  Aligned_cols=146  Identities=14%  Similarity=0.271  Sum_probs=111.7

Q ss_pred             hhhHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-CC
Q 041250           99 LATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AI  171 (259)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~~  171 (259)
                      .....+++.++  .....+|||||||+|.++..+++..+  +++++|+ +.+++.+++     ..++++++.+|+.+ ++
T Consensus        24 ~~~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~   99 (260)
T 1vl5_A           24 SDLAKLMQIAA--LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPF   99 (260)
T ss_dssp             CCHHHHHHHHT--CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCS
T ss_pred             HHHHHHHHHhC--CCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCC
Confidence            34566677766  66778999999999999999999875  8999999 889888876     23689999999988 66


Q ss_pred             C--CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhh-hhc-cCcccc
Q 041250          172 S--PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFM-MVL-LTGTER  247 (259)
Q Consensus       172 ~--~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m-~~~-~~g~~r  247 (259)
                      +  .||+|++..++|++++.  ..+|++++++|+|   ||++++.+...+....      ...++.... +.. .....+
T Consensus       100 ~~~~fD~V~~~~~l~~~~d~--~~~l~~~~r~Lkp---gG~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~  168 (260)
T 1vl5_A          100 TDERFHIVTCRIAAHHFPNP--ASFVSEAYRVLKK---GGQLLLVDNSAPENDA------FDVFYNYVEKERDYSHHRAW  168 (260)
T ss_dssp             CTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEEEBCSSHH------HHHHHHHHHHHHCTTCCCCC
T ss_pred             CCCCEEEEEEhhhhHhcCCH--HHHHHHHHHHcCC---CCEEEEEEcCCCCCHH------HHHHHHHHHHhcCccccCCC
Confidence            5  59999999999999875  4899999999999   9999999887654311      111222211 111 244678


Q ss_pred             CHHHHHHHHhcC
Q 041250          248 DEKEWAKIFADS  259 (259)
Q Consensus       248 t~~e~~~ll~~a  259 (259)
                      +.++|.++++++
T Consensus       169 ~~~~~~~~l~~a  180 (260)
T 1vl5_A          169 KKSDWLKMLEEA  180 (260)
T ss_dssp             BHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHC
Confidence            899999998763

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.69  E-value=7.2e-16  Score=132.18  Aligned_cols=143  Identities=15%  Similarity=0.218  Sum_probs=109.7

Q ss_pred             HHHHHhc----ccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-
Q 041250          102 SVMIQKC----KNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-  169 (259)
Q Consensus       102 ~~~~~~~----~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-  169 (259)
                      ..+++.+    .  +....+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++      ..++++++.+|+.+ 
T Consensus        68 ~~l~~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~  144 (297)
T 2o57_A           68 EWLASELAMTGV--LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI  144 (297)
T ss_dssp             HHHHHHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC
T ss_pred             HHHHHHhhhccC--CCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccC
Confidence            4455555    4  5667899999999999999999987 469999999 888888776      34789999999998 


Q ss_pred             CCC--CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCcccc
Q 041250          170 AIS--PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTER  247 (259)
Q Consensus       170 ~~~--~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~r  247 (259)
                      +++  .||+|++..++|++++  ..++|++++++|+|   ||++++.++..+......   ....+++..    ......
T Consensus       145 ~~~~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~---~~~~~~~~~----~~~~~~  212 (297)
T 2o57_A          145 PCEDNSYDFIWSQDAFLHSPD--KLKVFQECARVLKP---RGVMAITDPMKEDGIDKS---SIQPILDRI----KLHDMG  212 (297)
T ss_dssp             SSCTTCEEEEEEESCGGGCSC--HHHHHHHHHHHEEE---EEEEEEEEEEECTTCCGG---GGHHHHHHH----TCSSCC
T ss_pred             CCCCCCEeEEEecchhhhcCC--HHHHHHHHHHHcCC---CeEEEEEEeccCCCCchH---HHHHHHHHh----cCCCCC
Confidence            655  4999999999999988  46899999999999   999999998776543321   111111111    122356


Q ss_pred             CHHHHHHHHhcC
Q 041250          248 DEKEWAKIFADS  259 (259)
Q Consensus       248 t~~e~~~ll~~a  259 (259)
                      +.++|.++++++
T Consensus       213 ~~~~~~~~l~~a  224 (297)
T 2o57_A          213 SLGLYRSLAKEC  224 (297)
T ss_dssp             CHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHC
Confidence            888999888764

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.68  E-value=6.8e-16  Score=125.91  Aligned_cols=112  Identities=14%  Similarity=0.186  Sum_probs=94.7

Q ss_pred             HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-CCCCeEEEeCCCCCCCC--CccEE
Q 041250          102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-DLVNLKYVGGDMFKAIS--PAYAV  177 (259)
Q Consensus       102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri~~~~~d~~~~~~--~~D~~  177 (259)
                      ..+++.+.. .....+|||||||+|.++..+++.  +.+++++|+ +.+++.+++ ...+++++.+|+.+..+  .||+|
T Consensus        35 ~~~~~~l~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~v  111 (218)
T 3ou2_A           35 PAALERLRA-GNIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDAV  111 (218)
T ss_dssp             HHHHHHHTT-TTSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEEE
T ss_pred             HHHHHHHhc-CCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeEE
Confidence            334444441 445579999999999999999999  669999999 889998887 34789999999988533  59999


Q ss_pred             eehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250          178 LLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKE  219 (259)
Q Consensus       178 ~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~  219 (259)
                      ++.+++|++++++...+|+++++.|+|   ||++++.+...+
T Consensus       112 ~~~~~l~~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~  150 (218)
T 3ou2_A          112 FFAHWLAHVPDDRFEAFWESVRSAVAP---GGVVEFVDVTDH  150 (218)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEECCC
T ss_pred             EEechhhcCCHHHHHHHHHHHHHHcCC---CeEEEEEeCCCC
Confidence            999999999998888999999999999   999999988653

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.68  E-value=6.8e-16  Score=129.29  Aligned_cols=144  Identities=10%  Similarity=0.012  Sum_probs=107.4

Q ss_pred             hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-CCC
Q 041250          101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AIS  172 (259)
Q Consensus       101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~  172 (259)
                      ...+++.+.  ..+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++      ..++++++.+|+.+ +..
T Consensus        25 ~~~l~~~~~--~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  101 (256)
T 1nkv_A           25 YATLGRVLR--MKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVAN  101 (256)
T ss_dssp             HHHHHHHTC--CCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCS
T ss_pred             HHHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcC
Confidence            344555555  6677899999999999999999988 678999999 888888876      23689999999988 443


Q ss_pred             -CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccCHHH
Q 041250          173 -PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKE  251 (259)
Q Consensus       173 -~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~e  251 (259)
                       .||+|++..++|++++  ..++|++++++|+|   ||++++.++.........   .   .... .........++.++
T Consensus       102 ~~fD~V~~~~~~~~~~~--~~~~l~~~~r~Lkp---gG~l~~~~~~~~~~~~~~---~---~~~~-~~~~~~~~~~~~~~  169 (256)
T 1nkv_A          102 EKCDVAACVGATWIAGG--FAGAEELLAQSLKP---GGIMLIGEPYWRQLPATE---E---IAQA-CGVSSTSDFLTLPG  169 (256)
T ss_dssp             SCEEEEEEESCGGGTSS--SHHHHHHHTTSEEE---EEEEEEEEEEETTCCSSH---H---HHHT-TTCSCGGGSCCHHH
T ss_pred             CCCCEEEECCChHhcCC--HHHHHHHHHHHcCC---CeEEEEecCcccCCCChH---H---HHHH-HhcccccccCCHHH
Confidence             5999999999999986  35899999999999   999999998766543321   0   0100 00111224566777


Q ss_pred             HHHHHhcC
Q 041250          252 WAKIFADS  259 (259)
Q Consensus       252 ~~~ll~~a  259 (259)
                      |.++++++
T Consensus       170 ~~~~l~~a  177 (256)
T 1nkv_A          170 LVGAFDDL  177 (256)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHHC
Confidence            77776653

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.68  E-value=4.7e-16  Score=127.36  Aligned_cols=148  Identities=11%  Similarity=0.144  Sum_probs=110.1

Q ss_pred             HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccC-CCCeEEEeCCCCC-CCC-CccEE
Q 041250          102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESD-LVNLKYVGGDMFK-AIS-PAYAV  177 (259)
Q Consensus       102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~ri~~~~~d~~~-~~~-~~D~~  177 (259)
                      ..+++.+.  .....+|||||||+|.++..+++.  +.+++++|+ +.+++.+++. ..+++++.+|+.+ +.+ .||+|
T Consensus        35 ~~~l~~~~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~fD~v  110 (220)
T 3hnr_A           35 EDILEDVV--NKSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTI  110 (220)
T ss_dssp             HHHHHHHH--HTCCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCCSCCSEE
T ss_pred             HHHHHHhh--ccCCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCCCCeEEE
Confidence            34555555  556789999999999999999998  679999999 8899888873 3599999999998 554 69999


Q ss_pred             eehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhh---hhhhhhc--cCccccCHHHH
Q 041250          178 LLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFF---EMFMMVL--LTGTERDEKEW  252 (259)
Q Consensus       178 ~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~---d~~m~~~--~~g~~rt~~e~  252 (259)
                      ++.+++|++++.+...+|++++++|+|   ||.+++.++..+......   ......   .+.....  .....++.++|
T Consensus       111 ~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (220)
T 3hnr_A          111 VSTYAFHHLTDDEKNVAIAKYSQLLNK---GGKIVFADTIFADQDAYD---KTVEAAKQRGFHQLANDLQTEYYTRIPVM  184 (220)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHHSCT---TCEEEEEEECBSSHHHHH---HHHHHHHHTTCHHHHHHHHHSCCCBHHHH
T ss_pred             EECcchhcCChHHHHHHHHHHHHhcCC---CCEEEEEeccccChHHHH---HHHHHHHhCCCccchhhcchhhcCCHHHH
Confidence            999999999998877899999999999   999999986554322110   000000   0000000  11234588999


Q ss_pred             HHHHhcC
Q 041250          253 AKIFADS  259 (259)
Q Consensus       253 ~~ll~~a  259 (259)
                      +++++++
T Consensus       185 ~~~l~~a  191 (220)
T 3hnr_A          185 QTIFENN  191 (220)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHC
Confidence            9999875

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.66  E-value=1.3e-15  Score=129.96  Aligned_cols=152  Identities=10%  Similarity=0.124  Sum_probs=112.6

Q ss_pred             HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCCCCCc
Q 041250          102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAISPA  174 (259)
Q Consensus       102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~~~  174 (259)
                      ..+++.++  ..+..+|||||||+|.++..++++++ .+++++|+ +.+++.+++      ..++++++.+|+.+....|
T Consensus        54 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~f  130 (287)
T 1kpg_A           54 DLALGKLG--LQPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPV  130 (287)
T ss_dssp             HHHHTTTT--CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCC
T ss_pred             HHHHHHcC--CCCcCEEEEECCcccHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCe
Confidence            34555555  66678999999999999999997775 49999999 888888776      2468999999997622569


Q ss_pred             cEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCC----Cchhh-hhhhhhhhhhh-hccCccccC
Q 041250          175 YAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKK----DYKSI-ETQLFFEMFMM-VLLTGTERD  248 (259)
Q Consensus       175 D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~----~~~~~-~~~~~~d~~m~-~~~~g~~rt  248 (259)
                      |+|++..++|++++++...+|++++++|+|   ||++++.+...+....    ..+.. ......+.... ...++..++
T Consensus       131 D~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  207 (287)
T 1kpg_A          131 DRIVSIGAFEHFGHERYDAFFSLAHRLLPA---DGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPS  207 (287)
T ss_dssp             SEEEEESCGGGTCTTTHHHHHHHHHHHSCT---TCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCC
T ss_pred             eEEEEeCchhhcChHHHHHHHHHHHHhcCC---CCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCC
Confidence            999999999999877778999999999999   9999999987664321    00000 00011111111 123667789


Q ss_pred             HHHHHHHHhcC
Q 041250          249 EKEWAKIFADS  259 (259)
Q Consensus       249 ~~e~~~ll~~a  259 (259)
                      .++|.++++++
T Consensus       208 ~~~~~~~l~~a  218 (287)
T 1kpg_A          208 IPMVQECASAN  218 (287)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHhC
Confidence            99999998865

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.66  E-value=6.8e-16  Score=130.88  Aligned_cols=143  Identities=14%  Similarity=0.256  Sum_probs=107.6

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-CCC--CccEEeehhh
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AIS--PAYAVLLKWI  182 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~~~--~~D~~~~~~v  182 (259)
                      +....+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++     ..++++++.+|+.+ +.+  .||+|+++++
T Consensus        35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~  114 (276)
T 3mgg_A           35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV  114 (276)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESC
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEech
Confidence            46678999999999999999999999999999999 888888876     34689999999988 554  5999999999


Q ss_pred             hccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhh--hhccCccccCHHHHHHHHhcC
Q 041250          183 LLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFM--MVLLTGTERDEKEWAKIFADS  259 (259)
Q Consensus       183 lh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m--~~~~~g~~rt~~e~~~ll~~a  259 (259)
                      +|++++..  .+|++++++|+|   ||.+++.+.........+........+....  ....++..++..+|.+++++|
T Consensus       115 l~~~~~~~--~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~a  188 (276)
T 3mgg_A          115 LEHLQSPE--EALKSLKKVLKP---GGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQES  188 (276)
T ss_dssp             GGGCSCHH--HHHHHHHHHEEE---EEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHHTTCCTTGGGGHHHHHHHT
T ss_pred             hhhcCCHH--HHHHHHHHHcCC---CcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHC
Confidence            99998864  899999999999   9999998864322211110001111222111  112356667788899888765

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.66  E-value=1.7e-15  Score=126.10  Aligned_cols=144  Identities=16%  Similarity=0.296  Sum_probs=111.1

Q ss_pred             hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-CCC-
Q 041250          101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AIS-  172 (259)
Q Consensus       101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~~~-  172 (259)
                      ...+++.++  .....+|||||||+|.++..+++..+  +++++|+ +.+++.+++     ..++++++.+|+.+ +++ 
T Consensus        10 ~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~   85 (239)
T 1xxl_A           10 LGLMIKTAE--CRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPD   85 (239)
T ss_dssp             HHHHHHHHT--CCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCT
T ss_pred             cchHHHHhC--cCCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCC
Confidence            345666666  77788999999999999999999875  8999999 888888776     34689999999987 554 


Q ss_pred             -CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhh-hh-ccCccccCH
Q 041250          173 -PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFM-MV-LLTGTERDE  249 (259)
Q Consensus       173 -~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m-~~-~~~g~~rt~  249 (259)
                       .||+|++.+++|++++.  ..+|++++++|+|   ||++++.+...+...      ....++.... +. ..+...++.
T Consensus        86 ~~fD~v~~~~~l~~~~~~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~  154 (239)
T 1xxl_A           86 DSFDIITCRYAAHHFSDV--RKAVREVARVLKQ---DGRFLLVDHYAPEDP------VLDEFVNHLNRLRDPSHVRESSL  154 (239)
T ss_dssp             TCEEEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEECBCSSH------HHHHHHHHHHHHHCTTCCCCCBH
T ss_pred             CcEEEEEECCchhhccCH--HHHHHHHHHHcCC---CcEEEEEEcCCCCCh------hHHHHHHHHHHhccccccCCCCH
Confidence             49999999999999874  5899999999999   999999988765431      1112222111 11 124567889


Q ss_pred             HHHHHHHhcC
Q 041250          250 KEWAKIFADS  259 (259)
Q Consensus       250 ~e~~~ll~~a  259 (259)
                      ++|.++++++
T Consensus       155 ~~~~~ll~~a  164 (239)
T 1xxl_A          155 SEWQAMFSAN  164 (239)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHC
Confidence            9999999865

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.65  E-value=1.7e-15  Score=123.93  Aligned_cols=136  Identities=19%  Similarity=0.225  Sum_probs=108.1

Q ss_pred             hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-CCC
Q 041250          101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AIS  172 (259)
Q Consensus       101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~~~  172 (259)
                      ...+++.++  .....+|||||||+|.++..+++.. |+.+++++|+ +.+++.+++     ..++++++.+|+.+ +.+
T Consensus        26 ~~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~  103 (219)
T 3dh0_A           26 PEKVLKEFG--LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLP  103 (219)
T ss_dssp             HHHHHHHHT--CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSC
T ss_pred             HHHHHHHhC--CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCC
Confidence            345666666  6777899999999999999999986 8889999999 888888876     33589999999988 554


Q ss_pred             --CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccCHH
Q 041250          173 --PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEK  250 (259)
Q Consensus       173 --~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~  250 (259)
                        .||+|++..++|++++.  ..+|++++++|+|   ||++++.+.........+..                ...++.+
T Consensus       104 ~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~~~----------------~~~~~~~  162 (219)
T 3dh0_A          104 DNTVDFIFMAFTFHELSEP--LKFLEELKRVAKP---FAYLAIIDWKKEERDKGPPP----------------EEVYSEW  162 (219)
T ss_dssp             SSCEEEEEEESCGGGCSSH--HHHHHHHHHHEEE---EEEEEEEEECSSCCSSSCCG----------------GGSCCHH
T ss_pred             CCCeeEEEeehhhhhcCCH--HHHHHHHHHHhCC---CeEEEEEEecccccccCCch----------------hcccCHH
Confidence              49999999999999764  5899999999999   99999998766655333210                1224677


Q ss_pred             HHHHHHhcC
Q 041250          251 EWAKIFADS  259 (259)
Q Consensus       251 e~~~ll~~a  259 (259)
                      +|.++++++
T Consensus       163 ~~~~~l~~~  171 (219)
T 3dh0_A          163 EVGLILEDA  171 (219)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHC
Confidence            777777653

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.65  E-value=1.3e-15  Score=124.84  Aligned_cols=109  Identities=11%  Similarity=0.071  Sum_probs=89.9

Q ss_pred             HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccC------C----CCeEEEeCCCCC-
Q 041250          102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESD------L----VNLKYVGGDMFK-  169 (259)
Q Consensus       102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~----~ri~~~~~d~~~-  169 (259)
                      ..+.+.+.  ..+..+|||||||+|.++..+++..|..+++++|+ +.+++.+++.      .    .+++++.+|+.. 
T Consensus        19 ~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~   96 (219)
T 3jwg_A           19 GTVVAVLK--SVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYR   96 (219)
T ss_dssp             HHHHHHHH--HTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSC
T ss_pred             HHHHHHHh--hcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccccc
Confidence            33444444  45578999999999999999999999899999999 8889888761      1    289999999966 


Q ss_pred             CCC--CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250          170 AIS--PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKD  215 (259)
Q Consensus       170 ~~~--~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e  215 (259)
                      +.+  .||+|++..++|++++++..++++++++.|+|   ||.+++..
T Consensus        97 ~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~~i~~~  141 (219)
T 3jwg_A           97 DKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRP---QTVIVSTP  141 (219)
T ss_dssp             CGGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCC---SEEEEEEE
T ss_pred             ccccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCC---CEEEEEcc
Confidence            332  59999999999999998888999999999999   88554443

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.65  E-value=1.7e-16  Score=129.32  Aligned_cols=148  Identities=14%  Similarity=0.172  Sum_probs=105.1

Q ss_pred             HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-CCC-
Q 041250          102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AIS-  172 (259)
Q Consensus       102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~-  172 (259)
                      ..+++.++  ..+. +|||||||+|.++..+++. |+.+++++|+ +.+++.+++      ..++++++.+|+.+ +++ 
T Consensus        34 ~~~~~~~~--~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~  109 (219)
T 3dlc_A           34 ENIINRFG--ITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIED  109 (219)
T ss_dssp             HHHHHHHC--CCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCT
T ss_pred             HHHHHhcC--CCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCc
Confidence            33444444  3434 9999999999999999999 8889999999 888888876      25689999999998 655 


Q ss_pred             -CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhh-hh-hhhhhhhhhccCccccCH
Q 041250          173 -PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIE-TQ-LFFEMFMMVLLTGTERDE  249 (259)
Q Consensus       173 -~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~-~~-~~~d~~m~~~~~g~~rt~  249 (259)
                       .||+|++..++|++++.  ..+|+++++.|+|   ||++++.+...+...... ... .. ....+..........++.
T Consensus       110 ~~~D~v~~~~~l~~~~~~--~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  183 (219)
T 3dlc_A          110 NYADLIVSRGSVFFWEDV--ATAFREIYRILKS---GGKTYIGGGFGNKELRDS-ISAEMIRKNPDWKEFNRKNISQENV  183 (219)
T ss_dssp             TCEEEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEECCSSHHHHHH-HHHHHHHHCTTHHHHHHHHSSHHHH
T ss_pred             ccccEEEECchHhhccCH--HHHHHHHHHhCCC---CCEEEEEeccCcHHHHHH-HHHHHHHhHHHHHhhhhhccccCCH
Confidence             49999999999999664  5799999999999   999999875433311100 000 00 000011111123345688


Q ss_pred             HHHHHHHhcC
Q 041250          250 KEWAKIFADS  259 (259)
Q Consensus       250 ~e~~~ll~~a  259 (259)
                      ++|+++++++
T Consensus       184 ~~~~~~l~~a  193 (219)
T 3dlc_A          184 ERFQNVLDEI  193 (219)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHc
Confidence            9999998764

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.64  E-value=1.1e-15  Score=127.68  Aligned_cols=139  Identities=16%  Similarity=0.316  Sum_probs=108.2

Q ss_pred             HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEeCCCCC-CCC--Cc
Q 041250          102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFK-AIS--PA  174 (259)
Q Consensus       102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~-~~~--~~  174 (259)
                      ..+++.+.  ..+..+|||||||+|.++..+++.. ..+++++|+ +.+++.+++   ...+++++.+|+.+ +.+  .|
T Consensus        83 ~~~l~~l~--~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f  159 (254)
T 1xtp_A           83 RNFIASLP--GHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTY  159 (254)
T ss_dssp             HHHHHTST--TCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCE
T ss_pred             HHHHHhhc--ccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCe
Confidence            34555555  5567899999999999999999886 457999998 889988887   22689999999987 554  59


Q ss_pred             cEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccCHHHHHH
Q 041250          175 YAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAK  254 (259)
Q Consensus       175 D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~e~~~  254 (259)
                      |+|++.+++|++++++..++|++++++|+|   ||++++.+........         ..+.    ......++.++|++
T Consensus       160 D~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~---------~~~~----~~~~~~~~~~~~~~  223 (254)
T 1xtp_A          160 DLIVIQWTAIYLTDADFVKFFKHCQQALTP---NGYIFFKENCSTGDRF---------LVDK----EDSSLTRSDIHYKR  223 (254)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEBC--CCE---------EEET----TTTEEEBCHHHHHH
T ss_pred             EEEEEcchhhhCCHHHHHHHHHHHHHhcCC---CeEEEEEecCCCcccc---------eecc----cCCcccCCHHHHHH
Confidence            999999999999988889999999999999   9999999875433221         1110    12334679999999


Q ss_pred             HHhcC
Q 041250          255 IFADS  259 (259)
Q Consensus       255 ll~~a  259 (259)
                      +++++
T Consensus       224 ~l~~a  228 (254)
T 1xtp_A          224 LFNES  228 (254)
T ss_dssp             HHHHH
T ss_pred             HHHHC
Confidence            98753

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.64  E-value=1.8e-15  Score=127.45  Aligned_cols=131  Identities=14%  Similarity=0.145  Sum_probs=98.1

Q ss_pred             hHHHHHHHHHHhcc-h--hhhHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCC
Q 041250           84 KLNNFFNEAMASDA-R--LATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVN  159 (259)
Q Consensus        84 ~~~~~f~~~m~~~~-~--~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~r  159 (259)
                      .....|...+.... .  .....+.+.+....++..+|||||||+|.++..+++..  .+++++|+ +.+++.+++...+
T Consensus        17 ~~a~~yd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~~~   94 (263)
T 3pfg_A           17 EIAELYDLVHQGKGKDYHREAADLAALVRRHSPKAASLLDVACGTGMHLRHLADSF--GTVEGLELSADMLAIARRRNPD   94 (263)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCTTCCEEEEETCTTSHHHHHHTTTS--SEEEEEESCHHHHHHHHHHCTT
T ss_pred             hHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCCCCcEEEeCCcCCHHHHHHHHcC--CeEEEEECCHHHHHHHHhhCCC
Confidence            34455555554221 1  12233444443224556899999999999999999885  47999999 8999999875669


Q ss_pred             eEEEeCCCCC-CCC-CccEEeehh-hhccCCh-HHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250          160 LKYVGGDMFK-AIS-PAYAVLLKW-ILLDWND-EECVKILKKCKEAITRDGKKRKVIIKDMIKE  219 (259)
Q Consensus       160 i~~~~~d~~~-~~~-~~D~~~~~~-vlh~~~d-~~~~~il~~~~~~L~p~~~gg~lli~e~~~~  219 (259)
                      ++++.+|+.+ +.+ .||+|++.. ++|++++ ++..++|++++++|+|   ||+++|.+...+
T Consensus        95 ~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~p---gG~l~i~~~~~~  155 (263)
T 3pfg_A           95 AVLHHGDMRDFSLGRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLP---DGVVVVEPWWFP  155 (263)
T ss_dssp             SEEEECCTTTCCCSCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEE---EEEEEECCCCCT
T ss_pred             CEEEECChHHCCccCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCC---CcEEEEEeccCh
Confidence            9999999998 544 599999998 9999865 5677999999999999   898888654333

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.64  E-value=1e-15  Score=125.33  Aligned_cols=109  Identities=14%  Similarity=0.058  Sum_probs=90.3

Q ss_pred             HHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccC-----C-----CCeEEEeCCCCC-C
Q 041250          103 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESD-----L-----VNLKYVGGDMFK-A  170 (259)
Q Consensus       103 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~-----~ri~~~~~d~~~-~  170 (259)
                      .+.+.+.  ..+..+|||||||+|.++..+++.+|..+++++|+ +.+++.+++.     .     .+++++.+|+.. +
T Consensus        20 ~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~   97 (217)
T 3jwh_A           20 GVVAALK--QSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQD   97 (217)
T ss_dssp             HHHHHHH--HTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCC
T ss_pred             HHHHHHH--hcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCccccc
Confidence            3444444  45578999999999999999999999899999999 8888888761     1     289999999966 3


Q ss_pred             CC--CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          171 IS--PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       171 ~~--~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      .+  .||+|++..++|++++++..++++++++.|+|   ||.+++...
T Consensus        98 ~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~~  142 (217)
T 3jwh_A           98 KRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQP---KIVIVTTPN  142 (217)
T ss_dssp             GGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCC---SEEEEEEEB
T ss_pred             ccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCC---CEEEEEccC
Confidence            33  59999999999999998888999999999999   886655543

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.64  E-value=4e-15  Score=124.61  Aligned_cols=141  Identities=11%  Similarity=0.086  Sum_probs=106.5

Q ss_pred             HHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-CCC--
Q 041250          103 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AIS--  172 (259)
Q Consensus       103 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~--  172 (259)
                      .++..+. .+.+..+|||||||+|.++..+++.+|. +++++|+ +.+++.+++      ..++++++.+|+.+ +.+  
T Consensus        36 ~~l~~l~-~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~  113 (257)
T 3f4k_A           36 KAVSFIN-ELTDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNE  113 (257)
T ss_dssp             HHHTTSC-CCCTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTT
T ss_pred             HHHHHHh-cCCCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCC
Confidence            3444443 1456679999999999999999999986 9999999 888888776      35679999999977 554  


Q ss_pred             CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccCHHHH
Q 041250          173 PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEW  252 (259)
Q Consensus       173 ~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~e~  252 (259)
                      .||+|++..++|+++   ..++|+++++.|+|   ||++++.+..........   .   ..+...-  .....++.++|
T Consensus       114 ~fD~v~~~~~l~~~~---~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~---~---~~~~~~~--~~~~~~~~~~~  179 (257)
T 3f4k_A          114 ELDLIWSEGAIYNIG---FERGMNEWSKYLKK---GGFIAVSEASWFTSERPA---E---IEDFWMD--AYPEISVIPTC  179 (257)
T ss_dssp             CEEEEEEESCSCCCC---HHHHHHHHHTTEEE---EEEEEEEEEEESSSCCCH---H---HHHHHHH--HCTTCCBHHHH
T ss_pred             CEEEEEecChHhhcC---HHHHHHHHHHHcCC---CcEEEEEEeeccCCCChH---H---HHHHHHH--hCCCCCCHHHH
Confidence            599999999999984   35799999999999   999999998755443321   1   1111111  12336788999


Q ss_pred             HHHHhcC
Q 041250          253 AKIFADS  259 (259)
Q Consensus       253 ~~ll~~a  259 (259)
                      .+++++|
T Consensus       180 ~~~l~~a  186 (257)
T 3f4k_A          180 IDKMERA  186 (257)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHC
Confidence            9988764

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.64  E-value=6.8e-16  Score=124.93  Aligned_cols=127  Identities=14%  Similarity=0.143  Sum_probs=103.3

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCC-CCC--CccEEeehhhhccCChHH
Q 041250          115 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK-AIS--PAYAVLLKWILLDWNDEE  190 (259)
Q Consensus       115 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~~--~~D~~~~~~vlh~~~d~~  190 (259)
                      ..+|||||||+|.++..+++.  +.+++++|+ +.+++.+++...+++++.+|+.+ +.+  .||+|++.+++|++++++
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~  119 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGE  119 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTT
T ss_pred             CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHH
Confidence            679999999999999999998  568999999 88999988767799999999988 544  599999999999999777


Q ss_pred             HHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccCHHHHHHHHhcC
Q 041250          191 CVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAKIFADS  259 (259)
Q Consensus       191 ~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~e~~~ll~~a  259 (259)
                      ...+|++++++|+|   ||++++.+...+....         +..    .......++.++|+++++++
T Consensus       120 ~~~~l~~~~~~L~p---gG~l~i~~~~~~~~~~---------~~~----~~~~~~~~~~~~~~~~l~~~  172 (203)
T 3h2b_A          120 LPDALVALRMAVED---GGGLLMSFFSGPSLEP---------MYH----PVATAYRWPLPELAQALETA  172 (203)
T ss_dssp             HHHHHHHHHHTEEE---EEEEEEEEECCSSCEE---------ECC----SSSCEEECCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCC---CcEEEEEEccCCchhh---------hhc----hhhhhccCCHHHHHHHHHHC
Confidence            88999999999999   8999888764433111         000    01234567899999998864

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.63  E-value=9.3e-15  Score=126.38  Aligned_cols=144  Identities=10%  Similarity=0.028  Sum_probs=109.2

Q ss_pred             HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-CCC-
Q 041250          102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AIS-  172 (259)
Q Consensus       102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~-  172 (259)
                      ..+++.++ .+....+|||||||+|.++..+++++ +.+++++|+ +.+++.+++      ..++++++.+|+.+ +++ 
T Consensus       106 ~~l~~~l~-~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  183 (312)
T 3vc1_A          106 EFLMDHLG-QAGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDK  183 (312)
T ss_dssp             HHHHTTSC-CCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCT
T ss_pred             HHHHHHhc-cCCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCC
Confidence            44555554 14567899999999999999999986 578999999 888888876      34689999999998 555 


Q ss_pred             -CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccCHHH
Q 041250          173 -PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKE  251 (259)
Q Consensus       173 -~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~e  251 (259)
                       .||+|++..++|+++   ...+|++++++|+|   ||++++.+..........  ......++-.+    ....++.++
T Consensus       184 ~~fD~V~~~~~l~~~~---~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~--~~~~~~~~~~~----~~~~~s~~~  251 (312)
T 3vc1_A          184 GAVTASWNNESTMYVD---LHDLFSEHSRFLKV---GGRYVTITGCWNPRYGQP--SKWVSQINAHF----ECNIHSRRE  251 (312)
T ss_dssp             TCEEEEEEESCGGGSC---HHHHHHHHHHHEEE---EEEEEEEEEEECTTTCSC--CHHHHHHHHHH----TCCCCBHHH
T ss_pred             CCEeEEEECCchhhCC---HHHHHHHHHHHcCC---CcEEEEEEccccccccch--hHHHHHHHhhh----cCCCCCHHH
Confidence             599999999999994   67899999999999   999999998776643221  01111111111    124678899


Q ss_pred             HHHHHhcC
Q 041250          252 WAKIFADS  259 (259)
Q Consensus       252 ~~~ll~~a  259 (259)
                      |++++++|
T Consensus       252 ~~~~l~~a  259 (312)
T 3vc1_A          252 YLRAMADN  259 (312)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHHC
Confidence            99998875

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.63  E-value=2.3e-15  Score=129.47  Aligned_cols=151  Identities=10%  Similarity=0.111  Sum_probs=112.1

Q ss_pred             HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCCCCCc
Q 041250          102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAISPA  174 (259)
Q Consensus       102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~~~  174 (259)
                      ..+++.++  ..+..+|||||||+|.++..+++.++ .+++++|+ +.+++.+++      ..++++++.+|+.+....|
T Consensus        62 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~f  138 (302)
T 3hem_A           62 KLALDKLN--LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPV  138 (302)
T ss_dssp             HHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCC
T ss_pred             HHHHHHcC--CCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHcCCCc
Confidence            34566666  66778999999999999999999987 79999999 888888876      3458999999997653369


Q ss_pred             cEEeehhhhccCCh-------HHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhh-----hhhhhhhhhhh-hc
Q 041250          175 YAVLLKWILLDWND-------EECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSI-----ETQLFFEMFMM-VL  241 (259)
Q Consensus       175 D~~~~~~vlh~~~d-------~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~-----~~~~~~d~~m~-~~  241 (259)
                      |+|++..++|++++       +....+++++.++|+|   ||++++.+...+.........     ....+.++... ..
T Consensus       139 D~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (302)
T 3hem_A          139 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPD---DGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIF  215 (302)
T ss_dssp             SEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCT---TCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTC
T ss_pred             cEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCC---CcEEEEEEEeccCccchhhccccccccccchHHHHHHhcC
Confidence            99999999999944       6677999999999999   999999988766432110000     00001122211 22


Q ss_pred             cCccccCHHHHHHHHhc
Q 041250          242 LTGTERDEKEWAKIFAD  258 (259)
Q Consensus       242 ~~g~~rt~~e~~~ll~~  258 (259)
                      .++..++.+++.+++++
T Consensus       216 p~~~~~s~~~~~~~l~~  232 (302)
T 3hem_A          216 PGGRLPRISQVDYYSSN  232 (302)
T ss_dssp             TTCCCCCHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHh
Confidence            36677888888888775

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.63  E-value=1.3e-15  Score=126.22  Aligned_cols=102  Identities=15%  Similarity=0.098  Sum_probs=87.6

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCCCC--CccEEeehhhhcc
Q 041250          115 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAIS--PAYAVLLKWILLD  185 (259)
Q Consensus       115 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~--~~D~~~~~~vlh~  185 (259)
                      ..+|||||||+|.++..+++  ++.+++++|+ +.+++.+++      ...+++++.+|+.+..+  .||+|++..++|+
T Consensus        67 ~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~  144 (235)
T 3lcc_A           67 LGRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCA  144 (235)
T ss_dssp             CEEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTT
T ss_pred             CCCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhc
Confidence            35999999999999999876  5778999999 888888876      23579999999998333  5999999999999


Q ss_pred             CChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCC
Q 041250          186 WNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENR  221 (259)
Q Consensus       186 ~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~  221 (259)
                      +++++...++++++++|+|   ||++++.++.....
T Consensus       145 ~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~  177 (235)
T 3lcc_A          145 IEPEMRPAWAKSMYELLKP---DGELITLMYPITDH  177 (235)
T ss_dssp             SCGGGHHHHHHHHHHHEEE---EEEEEEEECCCSCC
T ss_pred             CCHHHHHHHHHHHHHHCCC---CcEEEEEEeccccc
Confidence            9988888999999999999   99999988765543

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.63  E-value=5e-15  Score=122.87  Aligned_cols=134  Identities=11%  Similarity=0.151  Sum_probs=103.0

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc--CCCCeEEEeCCCCC-CCC--CccEEeehhhhcc
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES--DLVNLKYVGGDMFK-AIS--PAYAVLLKWILLD  185 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~ri~~~~~d~~~-~~~--~~D~~~~~~vlh~  185 (259)
                      ++...+|||||||+|.++..+++.  +.+++++|+ +.+++.+++  ...+++++.+|+.+ +.+  .||+|++.+++|+
T Consensus        51 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~  128 (242)
T 3l8d_A           51 VKKEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEW  128 (242)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTS
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhh
Confidence            345679999999999999999998  568999999 888988887  46899999999998 554  5999999999999


Q ss_pred             CChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccCHHHHHHHHhcC
Q 041250          186 WNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAKIFADS  259 (259)
Q Consensus       186 ~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~e~~~ll~~a  259 (259)
                      +++.  ..+|++++++|+|   ||++++.+.........       ..+....-.......++.++|+++++++
T Consensus       129 ~~~~--~~~l~~~~~~L~p---gG~l~i~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~~~  190 (242)
T 3l8d_A          129 TEEP--LRALNEIKRVLKS---DGYACIAILGPTAKPRE-------NSYPRLYGKDVVCNTMMPWEFEQLVKEQ  190 (242)
T ss_dssp             SSCH--HHHHHHHHHHEEE---EEEEEEEEECTTCGGGG-------GGGGGGGTCCCSSCCCCHHHHHHHHHHT
T ss_pred             ccCH--HHHHHHHHHHhCC---CeEEEEEEcCCcchhhh-------hhhhhhccccccccCCCHHHHHHHHHHc
Confidence            9765  4899999999999   89998887533222111       1111111111244568899999998864

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.63  E-value=2.5e-15  Score=122.20  Aligned_cols=100  Identities=7%  Similarity=0.033  Sum_probs=85.7

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc--C---------------CCCeEEEeCCCCC-CCC
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES--D---------------LVNLKYVGGDMFK-AIS  172 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~---------------~~ri~~~~~d~~~-~~~  172 (259)
                      +....+|||+|||+|..+..++++  +.+++++|+ +.+++.|++  .               ..+++++.+|+++ +.+
T Consensus        20 ~~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~   97 (203)
T 1pjz_A           20 VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR   97 (203)
T ss_dssp             CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred             cCCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcc
Confidence            456789999999999999999998  569999999 899988876  1               3689999999998 432


Q ss_pred             ---CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          173 ---PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       173 ---~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                         .||+|+.+.++|++++++..+++++++++|+|   ||+++++..
T Consensus        98 ~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~Lkp---gG~~~l~~~  141 (203)
T 1pjz_A           98 DIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQ---ACSGLLITL  141 (203)
T ss_dssp             HHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCS---EEEEEEEEE
T ss_pred             cCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCC---CcEEEEEEE
Confidence               59999999999999988888899999999999   998555443

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.63  E-value=8.3e-15  Score=126.85  Aligned_cols=152  Identities=13%  Similarity=0.156  Sum_probs=113.1

Q ss_pred             HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCCCCCc
Q 041250          102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAISPA  174 (259)
Q Consensus       102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~~~  174 (259)
                      ..+++.++  .....+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++      ..++++++.+|+.+....|
T Consensus        80 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~f  156 (318)
T 2fk8_A           80 DLNLDKLD--LKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPV  156 (318)
T ss_dssp             HHHHTTSC--CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCC
T ss_pred             HHHHHhcC--CCCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCCCCc
Confidence            44566666  6667899999999999999999987 569999999 888888876      2367999999987632469


Q ss_pred             cEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCc----hhh-hhhhhhhhhhh-hccCccccC
Q 041250          175 YAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDY----KSI-ETQLFFEMFMM-VLLTGTERD  248 (259)
Q Consensus       175 D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~----~~~-~~~~~~d~~m~-~~~~g~~rt  248 (259)
                      |+|++..++|++++++..++|+++.++|+|   ||++++.++..+......    +.. ......+...- ...++..++
T Consensus       157 D~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  233 (318)
T 2fk8_A          157 DRIVSIEAFEHFGHENYDDFFKRCFNIMPA---DGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPS  233 (318)
T ss_dssp             SEEEEESCGGGTCGGGHHHHHHHHHHHSCT---TCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCC
T ss_pred             CEEEEeChHHhcCHHHHHHHHHHHHHhcCC---CcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCC
Confidence            999999999999877788999999999999   999999998765432100    000 00011121111 123567789


Q ss_pred             HHHHHHHHhcC
Q 041250          249 EKEWAKIFADS  259 (259)
Q Consensus       249 ~~e~~~ll~~a  259 (259)
                      .++|.++++++
T Consensus       234 ~~~~~~~l~~a  244 (318)
T 2fk8_A          234 TEMMVEHGEKA  244 (318)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhC
Confidence            99999998864

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.62  E-value=1.8e-16  Score=140.73  Aligned_cols=196  Identities=8%  Similarity=0.012  Sum_probs=134.3

Q ss_pred             CcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhhh-hhhcCCCCC--chh----hc-
Q 041250           10 GIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASK-LLLKDNPLS--EYA----GD-   81 (259)
Q Consensus        10 ~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~~-~l~~~~~~~--~~l----~~-   81 (259)
                      ++|..| .  +|.|+.|||+.+|++++.++++|+.+...+++  +..++ |++|+.++ ++...++.+  ++.    .. 
T Consensus        47 ~ll~~L-~--~~~t~~eLa~~~g~~~~~v~~~L~~l~~~gll--~~~~~-~~lt~~~~~~l~~~~~~~~~~~~~~~~~g~  120 (373)
T 2qm3_A           47 NVLSAV-L--ASDDIWRIVDLSEEPLPLVVAILESLNELGYV--TFEDG-VKLTEKGEELVAEYGIGKRYDFTCPHCQGK  120 (373)
T ss_dssp             HHHHHH-H--HCSCHHHHHHHHTSCHHHHHHHHHHHHHTTSE--ECSSS-SEECHHHHHHHHHHTCCCCCC---------
T ss_pred             HHHHHh-c--CCCCHHHHHHHhCCChHHHHHHHHHHhhCCcE--EECCC-EEECHHHHHHHHhcCccccccccchhhcCC
Confidence            789989 5  78999999999999999999999998887765  33335 99999876 444422211  111    00 


Q ss_pred             ---Cch---HHHHHHHHHHhcc-------h-h-hhHHHHHhc----ccccCCCCeEEEecCCchHHHHHHHHHCCCCeEE
Q 041250           82 ---ESK---LNNFFNEAMASDA-------R-L-ATSVMIQKC----KNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECT  142 (259)
Q Consensus        82 ---~~~---~~~~f~~~m~~~~-------~-~-~~~~~~~~~----~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~  142 (259)
                         .+.   ....+........       . . ..+.....+    ........+|||+| |+|.++..+++..|+.+++
T Consensus       121 g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~VLDlG-G~G~~~~~la~~~~~~~v~  199 (373)
T 2qm3_A          121 TVDLQAFADLLEQFREIVKDRPEPLHEFDQAYVTPETTVARVILMHTRGDLENKDIFVLG-DDDLTSIALMLSGLPKRIA  199 (373)
T ss_dssp             ---CGGGHHHHHHHHHHHTTCCCCCGGGTCCCBCHHHHHHHHHHHHHTTCSTTCEEEEES-CTTCHHHHHHHHTCCSEEE
T ss_pred             CcchhhhHHHHHHHHHHHhcCCccchhcCCeecCHHHHHHHHHHHhhcCCCCCCEEEEEC-CCCHHHHHHHHhCCCCEEE
Confidence               111   1122222222211       1 0 111111111    10012457999999 9999999999999888999


Q ss_pred             Eeec-hHHHhhccc-----CCCCeEEEeCCCCCCCC-----CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEE
Q 041250          143 CFDL-PHVVNGLES-----DLVNLKYVGGDMFKAIS-----PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKV  211 (259)
Q Consensus       143 ~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~~-----~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~l  211 (259)
                      ++|+ +.+++.|++     ..++++++.+|+.+++|     .||+|++...+|...   ...+++++.++|+|   ||++
T Consensus       200 ~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p~~~~~---~~~~l~~~~~~Lkp---gG~~  273 (373)
T 2qm3_A          200 VLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPPETLEA---IRAFVGRGIATLKG---PRCA  273 (373)
T ss_dssp             EECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCCSSHHH---HHHHHHHHHHTBCS---TTCE
T ss_pred             EEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCCCchHH---HHHHHHHHHHHccc---CCeE
Confidence            9999 899998887     23489999999988432     499999987766442   47899999999999   8977


Q ss_pred             EEEeeee
Q 041250          212 IIKDMIK  218 (259)
Q Consensus       212 li~e~~~  218 (259)
                      ++.+...
T Consensus       274 ~~~~~~~  280 (373)
T 2qm3_A          274 GYFGITR  280 (373)
T ss_dssp             EEEEECT
T ss_pred             EEEEEec
Confidence            6776653

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.62  E-value=5.3e-15  Score=131.65  Aligned_cols=136  Identities=11%  Similarity=0.154  Sum_probs=108.2

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeec-hHHHhhcccC---------C----CCeEEEeCCCCC-------C
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLESD---------L----VNLKYVGGDMFK-------A  170 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~---------~----~ri~~~~~d~~~-------~  170 (259)
                      ....+|||||||+|.++..+++.+ |+.+++++|+ +.+++.+++.         .    ++++|+.+|+.+       +
T Consensus        82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~  161 (383)
T 4fsd_A           82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG  161 (383)
T ss_dssp             GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred             CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence            456799999999999999999987 8899999999 8888888762         2    799999999987       4


Q ss_pred             CC--CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccC
Q 041250          171 IS--PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERD  248 (259)
Q Consensus       171 ~~--~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt  248 (259)
                      ++  .||+|++..++|++++.  ..+|++++++|+|   ||++++.+...+.....      ....+..+.....+..++
T Consensus       162 ~~~~~fD~V~~~~~l~~~~d~--~~~l~~~~r~Lkp---gG~l~i~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~  230 (383)
T 4fsd_A          162 VPDSSVDIVISNCVCNLSTNK--LALFKEIHRVLRD---GGELYFSDVYADRRLSE------AAQQDPILYGECLGGALY  230 (383)
T ss_dssp             CCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEEEESSCCCH------HHHHCHHHHHTTCTTCCB
T ss_pred             CCCCCEEEEEEccchhcCCCH--HHHHHHHHHHcCC---CCEEEEEEeccccccCH------hHhhhHHHhhcccccCCC
Confidence            44  49999999999999874  5899999999999   99999998876543221      112222333334567788


Q ss_pred             HHHHHHHHhcC
Q 041250          249 EKEWAKIFADS  259 (259)
Q Consensus       249 ~~e~~~ll~~a  259 (259)
                      .++|.++++++
T Consensus       231 ~~~~~~ll~~a  241 (383)
T 4fsd_A          231 LEDFRRLVAEA  241 (383)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHC
Confidence            99999999875

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.62  E-value=2.7e-15  Score=125.70  Aligned_cols=108  Identities=12%  Similarity=0.145  Sum_probs=92.8

Q ss_pred             HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCC-CCC-CccEEe
Q 041250          102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK-AIS-PAYAVL  178 (259)
Q Consensus       102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~~-~~D~~~  178 (259)
                      ..+++.+.  .....+|||||||+|.++..+++.+|..+++++|+ +.+++.+++..++++++.+|+.+ +.+ .||+|+
T Consensus        23 ~~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~  100 (259)
T 2p35_A           23 RDLLAQVP--LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWKPAQKADLLY  100 (259)
T ss_dssp             HHHHTTCC--CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCCCSSCEEEEE
T ss_pred             HHHHHhcC--CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcCccCCcCEEE
Confidence            34555555  56678999999999999999999999999999999 88999888766789999999987 422 599999


Q ss_pred             ehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          179 LKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       179 ~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      +.+++|++++  ...+|++++++|+|   ||++++..+
T Consensus       101 ~~~~l~~~~~--~~~~l~~~~~~L~p---gG~l~~~~~  133 (259)
T 2p35_A          101 ANAVFQWVPD--HLAVLSQLMDQLES---GGVLAVQMP  133 (259)
T ss_dssp             EESCGGGSTT--HHHHHHHHGGGEEE---EEEEEEEEE
T ss_pred             EeCchhhCCC--HHHHHHHHHHhcCC---CeEEEEEeC
Confidence            9999999976  45899999999999   999988875

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.62  E-value=6.4e-15  Score=118.39  Aligned_cols=113  Identities=14%  Similarity=0.171  Sum_probs=95.1

Q ss_pred             HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-CCC-C
Q 041250          102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AIS-P  173 (259)
Q Consensus       102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~~~-~  173 (259)
                      +.+++.++  ..+..+|||+|||+|.++..+++.  +.+++++|+ +.+++.+++     ..++++++.+|+.+ +.+ .
T Consensus        22 ~~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~   97 (199)
T 2xvm_A           22 SEVLEAVK--VVKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQ   97 (199)
T ss_dssp             HHHHHHTT--TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCC
T ss_pred             HHHHHHhh--ccCCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCC
Confidence            45666666  455679999999999999999988  669999999 888888776     33579999999987 444 5


Q ss_pred             ccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCC
Q 041250          174 AYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENR  221 (259)
Q Consensus       174 ~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~  221 (259)
                      ||+|++..++|++++++..+++++++++|+|   ||++++++...++.
T Consensus        98 ~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~---gG~l~~~~~~~~~~  142 (199)
T 2xvm_A           98 YDFILSTVVLMFLEAKTIPGLIANMQRCTKP---GGYNLIVAAMDTAD  142 (199)
T ss_dssp             EEEEEEESCGGGSCGGGHHHHHHHHHHTEEE---EEEEEEEEEBCCSS
T ss_pred             ceEEEEcchhhhCCHHHHHHHHHHHHHhcCC---CeEEEEEEeeccCC
Confidence            9999999999999987788999999999999   99999988766543

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.61  E-value=6.6e-15  Score=122.40  Aligned_cols=130  Identities=13%  Similarity=0.211  Sum_probs=100.2

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCC---CCC--CccEEeehhhhcc
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK---AIS--PAYAVLLKWILLD  185 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~---~~~--~~D~~~~~~vlh~  185 (259)
                      +.+..+|||||||+|.++..+++.  +.+++++|+ +.+++.+++.   ++++.+|+.+   +++  .||+|++.+++|+
T Consensus        39 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~---~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~  113 (240)
T 3dli_A           39 FKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK---FNVVKSDAIEYLKSLPDKYLDGVMISHFVEH  113 (240)
T ss_dssp             TTTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT---SEEECSCHHHHHHTSCTTCBSEEEEESCGGG
T ss_pred             hcCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh---cceeeccHHHHhhhcCCCCeeEEEECCchhh
Confidence            456689999999999999999998  557999999 8888888844   8999999876   444  4999999999999


Q ss_pred             CChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccCHHHHHHHHhcC
Q 041250          186 WNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAKIFADS  259 (259)
Q Consensus       186 ~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~e~~~ll~~a  259 (259)
                      +++++...+|++++++|+|   ||++++..+...   .   .   ....+. .....+....+.++|+++++++
T Consensus       114 ~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~---~---~---~~~~~~-~~~~~~~~~~~~~~l~~~l~~a  174 (240)
T 3dli_A          114 LDPERLFELLSLCYSKMKY---SSYIVIESPNPT---S---L---YSLINF-YIDPTHKKPVHPETLKFILEYL  174 (240)
T ss_dssp             SCGGGHHHHHHHHHHHBCT---TCCEEEEEECTT---S---H---HHHHHH-TTSTTCCSCCCHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCC---CcEEEEEeCCcc---h---h---HHHHHH-hcCccccccCCHHHHHHHHHHC
Confidence            9988788999999999999   999988765311   1   0   111121 1112345667888898888753

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.61  E-value=4e-15  Score=126.98  Aligned_cols=101  Identities=16%  Similarity=0.202  Sum_probs=89.1

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCC-CeEEEeec-hHHHhhccc----CCCCeEEEeCCCCC-CCC-CccEEeehhhh
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPK-LECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-AIS-PAYAVLLKWIL  183 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~~~-~~D~~~~~~vl  183 (259)
                      ..+..+|||||||+|.++..+++.+|+ .+++++|+ +.+++.+++    ...+++++.+|+.+ +.+ .||+|++..++
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l   99 (284)
T 3gu3_A           20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFL   99 (284)
T ss_dssp             CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEEEEEEESCG
T ss_pred             cCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcCCCeeEEEECChh
Confidence            556789999999999999999999995 89999999 888887776    34489999999998 555 59999999999


Q ss_pred             ccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250          184 LDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI  217 (259)
Q Consensus       184 h~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~  217 (259)
                      |++++.  .++++++++.|+|   ||++++.++.
T Consensus       100 ~~~~~~--~~~l~~~~~~Lkp---gG~l~~~~~~  128 (284)
T 3gu3_A          100 LHMTTP--ETMLQKMIHSVKK---GGKIICFEPH  128 (284)
T ss_dssp             GGCSSH--HHHHHHHHHTEEE---EEEEEEEECC
T ss_pred             hcCCCH--HHHHHHHHHHcCC---CCEEEEEecc
Confidence            999875  4899999999999   9999999875

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.61  E-value=6.6e-15  Score=121.81  Aligned_cols=103  Identities=20%  Similarity=0.197  Sum_probs=87.5

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCC-CCC-CccEEee-hhhhccCCh
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK-AIS-PAYAVLL-KWILLDWND  188 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~~-~~D~~~~-~~vlh~~~d  188 (259)
                      .+..+|||||||+|.++..+++.++  +++++|+ +.+++.+++...+++++.+|+.+ +.+ .||+|++ ..++|++++
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~  116 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKFSAVVSMFSSVGYLKT  116 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCCSSCEEEEEECTTGGGGCCS
T ss_pred             CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHcccCCCCcEEEEcCchHhhcCC
Confidence            5568999999999999999999976  8999999 89999988766789999999988 444 5999994 558888754


Q ss_pred             -HHHHHHHHHHHHhcccCCCCcEEEEEeeeecC
Q 041250          189 -EECVKILKKCKEAITRDGKKRKVIIKDMIKEN  220 (259)
Q Consensus       189 -~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~  220 (259)
                       ++..++|++++++|+|   ||++++.+...++
T Consensus       117 ~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~  146 (239)
T 3bxo_A          117 TEELGAAVASFAEHLEP---GGVVVVEPWWFPE  146 (239)
T ss_dssp             HHHHHHHHHHHHHTEEE---EEEEEECCCCCTT
T ss_pred             HHHHHHHHHHHHHhcCC---CeEEEEEeccCcc
Confidence             6778999999999999   8998887765544

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.61  E-value=5.2e-15  Score=124.93  Aligned_cols=133  Identities=10%  Similarity=0.074  Sum_probs=103.4

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-CCC--CccEEeehh
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AIS--PAYAVLLKW  181 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~--~~D~~~~~~  181 (259)
                      +.+..+|||||||+|.++..+++. |..+++++|+ +.+++.+++      ..++++++.+|+.+ +.+  .||+|++..
T Consensus        44 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~  122 (267)
T 3kkz_A           44 LTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEG  122 (267)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESS
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcC
Confidence            456789999999999999999998 8889999999 888888876      34789999999988 554  599999999


Q ss_pred             hhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccCHHHHHHHHhcC
Q 041250          182 ILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAKIFADS  259 (259)
Q Consensus       182 vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~e~~~ll~~a  259 (259)
                      ++|+++   ...++++++++|+|   ||++++.+..........   .   ..+...  ......++.++|.+++++|
T Consensus       123 ~~~~~~---~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~---~---~~~~~~--~~~~~~~~~~~~~~~l~~a  186 (267)
T 3kkz_A          123 AIYNIG---FERGLNEWRKYLKK---GGYLAVSECSWFTDERPA---E---INDFWM--DAYPEIDTIPNQVAKIHKA  186 (267)
T ss_dssp             CGGGTC---HHHHHHHHGGGEEE---EEEEEEEEEEESSSCCCH---H---HHHHHH--HHCTTCEEHHHHHHHHHHT
T ss_pred             CceecC---HHHHHHHHHHHcCC---CCEEEEEEeeecCCCChH---H---HHHHHH--HhCCCCCCHHHHHHHHHHC
Confidence            999993   35789999999999   999999998765543321   1   111111  1123456788888888764

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.60  E-value=2.2e-15  Score=129.97  Aligned_cols=106  Identities=11%  Similarity=0.093  Sum_probs=90.3

Q ss_pred             cCCCCeEEEecCCchHHHHHHH-HHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-CCC-CccEEeehh
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIA-KAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AIS-PAYAVLLKW  181 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~-~~D~~~~~~  181 (259)
                      +.+..+|||||||+|.++..++ ..+|+.+++++|+ +.+++.+++      ..++++++.+|+.+ +.+ .||+|++..
T Consensus       116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~  195 (305)
T 3ocj_A          116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNG  195 (305)
T ss_dssp             CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECCS
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEECC
Confidence            4667899999999999999996 6789999999999 888888876      24569999999988 544 599999999


Q ss_pred             hhccCChH-HHHHHHHHHHHhcccCCCCcEEEEEeeeecC
Q 041250          182 ILLDWNDE-ECVKILKKCKEAITRDGKKRKVIIKDMIKEN  220 (259)
Q Consensus       182 vlh~~~d~-~~~~il~~~~~~L~p~~~gg~lli~e~~~~~  220 (259)
                      ++|++++. ....++++++++|+|   ||++++.+...+.
T Consensus       196 ~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~  232 (305)
T 3ocj_A          196 LNIYEPDDARVTELYRRFWQALKP---GGALVTSFLTPPP  232 (305)
T ss_dssp             SGGGCCCHHHHHHHHHHHHHHEEE---EEEEEEECCCCCT
T ss_pred             hhhhcCCHHHHHHHHHHHHHhcCC---CeEEEEEecCCCC
Confidence            99999654 455799999999999   9999998866544

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.60  E-value=2.9e-15  Score=124.62  Aligned_cols=128  Identities=16%  Similarity=0.292  Sum_probs=103.3

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-C----CCCeEEEeCCCCC-CCC--CccEEeehhhhc
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-D----LVNLKYVGGDMFK-AIS--PAYAVLLKWILL  184 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~----~~ri~~~~~d~~~-~~~--~~D~~~~~~vlh  184 (259)
                      +..+|||||||+|.++..+++.. ..+++++|+ +.+++.+++ .    ..+++++.+|+.+ +.+  .||+|++.+++|
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  157 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG  157 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence            46899999999999999999887 568999999 888888876 1    3469999999877 444  499999999999


Q ss_pred             cCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccCHHHHHHHHhcC
Q 041250          185 DWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAKIFADS  259 (259)
Q Consensus       185 ~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~e~~~ll~~a  259 (259)
                      ++++++...+|++++++|+|   ||++++.+...+.   ..       .++.    ..+...++.++|+++++++
T Consensus       158 ~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~---~~-------~~~~----~~~~~~~~~~~~~~~l~~a  215 (241)
T 2ex4_A          158 HLTDQHLAEFLRRCKGSLRP---NGIIVIKDNMAQE---GV-------ILDD----VDSSVCRDLDVVRRIICSA  215 (241)
T ss_dssp             GSCHHHHHHHHHHHHHHEEE---EEEEEEEEEEBSS---SE-------EEET----TTTEEEEBHHHHHHHHHHT
T ss_pred             hCCHHHHHHHHHHHHHhcCC---CeEEEEEEccCCC---cc-------eecc----cCCcccCCHHHHHHHHHHc
Confidence            99998888999999999999   9999999987654   11       1110    1233456899999998764

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.60  E-value=1.4e-14  Score=119.25  Aligned_cols=140  Identities=13%  Similarity=0.160  Sum_probs=104.0

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----C------CCCeEEEeCCCCC-CCC--CccEE
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----D------LVNLKYVGGDMFK-AIS--PAYAV  177 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~------~~ri~~~~~d~~~-~~~--~~D~~  177 (259)
                      ++...+|||||||+|.++..+++.  +.+++++|+ +.+++.+++    .      .+++++..+|+.+ +.+  .||+|
T Consensus        28 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v  105 (235)
T 3sm3_A           28 LQEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFA  105 (235)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEE
T ss_pred             CCCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEE
Confidence            345789999999999999999998  679999999 888888776    1      2378999999988 554  59999


Q ss_pred             eehhhhccCCh-HHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhc---------------
Q 041250          178 LLKWILLDWND-EECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVL---------------  241 (259)
Q Consensus       178 ~~~~vlh~~~d-~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~---------------  241 (259)
                      ++..++|++++ +...++|++++++|+|   ||++++.++..+.....  . ......++.....               
T Consensus       106 ~~~~~l~~~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (235)
T 3sm3_A          106 VMQAFLTSVPDPKERSRIIKEVFRVLKP---GAYLYLVEFGQNWHLKL--Y-RKRYLHDFPITKEEGSFLARDPETGETE  179 (235)
T ss_dssp             EEESCGGGCCCHHHHHHHHHHHHHHEEE---EEEEEEEEEBCCTTSHH--H-HHHHHHHHHHHCSTTEEEEECTTTCCEE
T ss_pred             EEcchhhcCCCHHHHHHHHHHHHHHcCC---CeEEEEEECCcchhHHH--H-HHHhhhhccchhhhcceEecccccCCcc
Confidence            99999999976 4466899999999999   99999998765432211  0 1111111111100               


Q ss_pred             cCccccCHHHHHHHHhcC
Q 041250          242 LTGTERDEKEWAKIFADS  259 (259)
Q Consensus       242 ~~g~~rt~~e~~~ll~~a  259 (259)
                      .....++.++|++++++|
T Consensus       180 ~~~~~~~~~~l~~ll~~a  197 (235)
T 3sm3_A          180 FIAHHFTEKELVFLLTDC  197 (235)
T ss_dssp             EEEECBCHHHHHHHHHTT
T ss_pred             eeeEeCCHHHHHHHHHHc
Confidence            112568999999999875

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.59  E-value=6.6e-15  Score=120.87  Aligned_cols=101  Identities=14%  Similarity=0.161  Sum_probs=88.3

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCC-CCC--CccEEeehhhhc
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-AIS--PAYAVLLKWILL  184 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~~~--~~D~~~~~~vlh  184 (259)
                      ....+|||||||+|.++..+++..|  +++++|+ +.+++.+++    ...+++++.+|+.+ +.+  .||+|++..++|
T Consensus        37 ~~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~  114 (227)
T 1ve3_A           37 KKRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIV  114 (227)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGG
T ss_pred             CCCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchH
Confidence            3367999999999999999999977  8999999 888888876    34899999999988 554  599999999988


Q ss_pred             cCChHHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 041250          185 DWNDEECVKILKKCKEAITRDGKKRKVIIKDMIK  218 (259)
Q Consensus       185 ~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~  218 (259)
                      .+..++..+++++++++|+|   ||++++.++..
T Consensus       115 ~~~~~~~~~~l~~~~~~L~~---gG~l~~~~~~~  145 (227)
T 1ve3_A          115 HFEPLELNQVFKEVRRVLKP---SGKFIMYFTDL  145 (227)
T ss_dssp             GCCHHHHHHHHHHHHHHEEE---EEEEEEEEECH
T ss_pred             hCCHHHHHHHHHHHHHHcCC---CcEEEEEecCh
Confidence            88877788999999999999   99999988753

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.57  E-value=2.2e-14  Score=119.99  Aligned_cols=106  Identities=17%  Similarity=0.069  Sum_probs=88.9

Q ss_pred             HHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc--CCCCeEEEeCCCCC-CCC--CccE
Q 041250          103 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES--DLVNLKYVGGDMFK-AIS--PAYA  176 (259)
Q Consensus       103 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~ri~~~~~d~~~-~~~--~~D~  176 (259)
                      .+.+.++  .....+|||||||+|.++..+++..+. +++++|+ +.+++.+++  ...+++++.+|+.+ +.+  .||+
T Consensus        35 ~l~~~~~--~~~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~  111 (253)
T 3g5l_A           35 ELKKMLP--DFNQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNV  111 (253)
T ss_dssp             HHHTTCC--CCTTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEE
T ss_pred             HHHHhhh--ccCCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEE
Confidence            3444444  446789999999999999999998765 8999999 889988887  35799999999987 554  5999


Q ss_pred             EeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          177 VLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       177 ~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      |++..++|++++  ..++|++++++|+|   ||++++...
T Consensus       112 v~~~~~l~~~~~--~~~~l~~~~~~Lkp---gG~l~~~~~  146 (253)
T 3g5l_A          112 VLSSLALHYIAS--FDDICKKVYINLKS---SGSFIFSVE  146 (253)
T ss_dssp             EEEESCGGGCSC--HHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred             EEEchhhhhhhh--HHHHHHHHHHHcCC---CcEEEEEeC
Confidence            999999999966  45899999999999   899888644

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.57  E-value=1.4e-14  Score=123.12  Aligned_cols=107  Identities=16%  Similarity=0.162  Sum_probs=91.4

Q ss_pred             hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCC-CCC-CccEE
Q 041250          101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK-AIS-PAYAV  177 (259)
Q Consensus       101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~~-~~D~~  177 (259)
                      ...+++.+.  .....+|||||||+|.++..+++  |+.+++++|+ +.+++.+++..++++++.+|+.+ +.+ .||+|
T Consensus        46 ~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v  121 (279)
T 3ccf_A           46 GEDLLQLLN--PQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRVDKPLDAV  121 (279)
T ss_dssp             CCHHHHHHC--CCTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCCSSCEEEE
T ss_pred             HHHHHHHhC--CCCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCcCCCcCEE
Confidence            345666666  56678999999999999999998  7889999999 89999888755889999999988 544 59999


Q ss_pred             eehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          178 LLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       178 ~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      ++.+++|++++.  ..+|++++++|+|   ||++++..+
T Consensus       122 ~~~~~l~~~~d~--~~~l~~~~~~Lkp---gG~l~~~~~  155 (279)
T 3ccf_A          122 FSNAMLHWVKEP--EAAIASIHQALKS---GGRFVAEFG  155 (279)
T ss_dssp             EEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEE
T ss_pred             EEcchhhhCcCH--HHHHHHHHHhcCC---CcEEEEEec
Confidence            999999998874  4899999999999   899888665

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.57  E-value=5.6e-15  Score=116.16  Aligned_cols=110  Identities=19%  Similarity=0.252  Sum_probs=91.8

Q ss_pred             HHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCCCCC--CccEEeeh
Q 041250          104 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKAIS--PAYAVLLK  180 (259)
Q Consensus       104 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~~--~~D~~~~~  180 (259)
                      +++.++  ..+..+|||||||+|.++..+++...  +++++|+ +.+++.+++..+++++..+|  .+.+  .||+|++.
T Consensus         9 ~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~v~~~~~d--~~~~~~~~D~v~~~   82 (170)
T 3i9f_A            9 YLPNIF--EGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEKFDSVITLSDP--KEIPDNSVDFILFA   82 (170)
T ss_dssp             THHHHH--SSCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHHCTTSEEESSG--GGSCTTCEEEEEEE
T ss_pred             HHHhcC--cCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHhCCCcEEEeCC--CCCCCCceEEEEEc
Confidence            444555  56678999999999999999999874  8999999 88888888767799999999  3333  59999999


Q ss_pred             hhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCC
Q 041250          181 WILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKD  224 (259)
Q Consensus       181 ~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~  224 (259)
                      .++|++++.  ..+++++++.|+|   ||++++.++........
T Consensus        83 ~~l~~~~~~--~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~  121 (170)
T 3i9f_A           83 NSFHDMDDK--QHVISEVKRILKD---DGRVIIIDWRKENTGIG  121 (170)
T ss_dssp             SCSTTCSCH--HHHHHHHHHHEEE---EEEEEEEEECSSCCSSS
T ss_pred             cchhcccCH--HHHHHHHHHhcCC---CCEEEEEEcCccccccC
Confidence            999999764  5899999999999   99999998876654443

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.57  E-value=2.6e-14  Score=118.58  Aligned_cols=135  Identities=10%  Similarity=0.121  Sum_probs=99.7

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-CCCCeEEEeCCCCCCCC--CccEEeehhhhccCCh
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-DLVNLKYVGGDMFKAIS--PAYAVLLKWILLDWND  188 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri~~~~~d~~~~~~--~~D~~~~~~vlh~~~d  188 (259)
                      .+..+|||||||+|.++..+++..+  +++++|+ +.+++.+++ ...+++++.+|+.+..+  .||+|++.+++|++++
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~  118 (250)
T 2p7i_A           41 FRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDD  118 (250)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCSS
T ss_pred             cCCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcCcCCcccEEEEhhHHHhhcC
Confidence            3457899999999999999999876  6899999 889988887 22399999999987433  5999999999999987


Q ss_pred             HHHHHHHHHHH-HhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhh---------hhhhccCccccCHHHHHHHHhc
Q 041250          189 EECVKILKKCK-EAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEM---------FMMVLLTGTERDEKEWAKIFAD  258 (259)
Q Consensus       189 ~~~~~il~~~~-~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~---------~m~~~~~g~~rt~~e~~~ll~~  258 (259)
                      .  .++|++++ ++|+|   ||++++.++.....  .   .........         ......+...++.++|++++++
T Consensus       119 ~--~~~l~~~~~~~Lkp---gG~l~i~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  188 (250)
T 2p7i_A          119 P--VALLKRINDDWLAE---GGRLFLVCPNANAV--S---RQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASR  188 (250)
T ss_dssp             H--HHHHHHHHHTTEEE---EEEEEEEEECTTCH--H---HHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHH
T ss_pred             H--HHHHHHHHHHhcCC---CCEEEEEcCChHHH--H---HHHHHHcCccccchhcccccccccccccCCHHHHHHHHHH
Confidence            5  58999999 99999   99999977532210  0   000000000         0001124467899999999986


Q ss_pred             C
Q 041250          259 S  259 (259)
Q Consensus       259 a  259 (259)
                      +
T Consensus       189 ~  189 (250)
T 2p7i_A          189 A  189 (250)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.56  E-value=1.2e-14  Score=124.85  Aligned_cols=111  Identities=14%  Similarity=0.189  Sum_probs=89.9

Q ss_pred             hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CC----CCeEEEeCCCCC-C
Q 041250          101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DL----VNLKYVGGDMFK-A  170 (259)
Q Consensus       101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~----~ri~~~~~d~~~-~  170 (259)
                      ...+++.+.  . ...+|||||||+|.++..+++.  +.+++++|+ +.+++.+++    ..    .+++++.+|+.+ +
T Consensus        72 ~~~~~~~~~--~-~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~  146 (299)
T 3g2m_A           72 AREFATRTG--P-VSGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFA  146 (299)
T ss_dssp             HHHHHHHHC--C-CCSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCC
T ss_pred             HHHHHHhhC--C-CCCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCC
Confidence            344555544  2 3349999999999999999988  578999999 889988886    22    789999999998 5


Q ss_pred             CC-CccEEee-hhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250          171 IS-PAYAVLL-KWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKE  219 (259)
Q Consensus       171 ~~-~~D~~~~-~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~  219 (259)
                      .+ .||+|++ ..++|++++++..++|++++++|+|   ||+|++..+..+
T Consensus       147 ~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~  194 (299)
T 3g2m_A          147 LDKRFGTVVISSGSINELDEADRRGLYASVREHLEP---GGKFLLSLAMSE  194 (299)
T ss_dssp             CSCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEE---EEEEEEEEECCH
T ss_pred             cCCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCC---CcEEEEEeecCc
Confidence            55 5998885 4788888888889999999999999   898888776544

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.56  E-value=1.4e-14  Score=122.17  Aligned_cols=98  Identities=9%  Similarity=0.071  Sum_probs=84.4

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCC-CCC--CccEEeehhhhccCCh
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK-AIS--PAYAVLLKWILLDWND  188 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~~--~~D~~~~~~vlh~~~d  188 (259)
                      ....+|||||||+|.++..+++.+  .+++++|+ +.+++.|+ ...+++++.+|+.+ +++  .||+|++..++|.++.
T Consensus        38 ~~~~~vLDvGcGtG~~~~~l~~~~--~~v~gvD~s~~ml~~a~-~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~~~  114 (257)
T 4hg2_A           38 PARGDALDCGCGSGQASLGLAEFF--ERVHAVDPGEAQIRQAL-RHPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWFDL  114 (257)
T ss_dssp             SCSSEEEEESCTTTTTHHHHHTTC--SEEEEEESCHHHHHTCC-CCTTEEEEECCTTCCCCCSSCEEEEEECSCCTTCCH
T ss_pred             CCCCCEEEEcCCCCHHHHHHHHhC--CEEEEEeCcHHhhhhhh-hcCCceeehhhhhhhcccCCcccEEEEeeehhHhhH
Confidence            455799999999999999999875  47999999 89999988 56799999999988 666  4999999999987764


Q ss_pred             HHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250          189 EECVKILKKCKEAITRDGKKRKVIIKDMIKE  219 (259)
Q Consensus       189 ~~~~~il~~~~~~L~p~~~gg~lli~e~~~~  219 (259)
                      +   +.+++++++|+|   ||.|+++.+..+
T Consensus       115 ~---~~~~e~~rvLkp---gG~l~~~~~~~~  139 (257)
T 4hg2_A          115 D---RFWAELRRVARP---GAVFAAVTYGLT  139 (257)
T ss_dssp             H---HHHHHHHHHEEE---EEEEEEEEECCC
T ss_pred             H---HHHHHHHHHcCC---CCEEEEEECCCC
Confidence            3   689999999999   999998887544

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.56  E-value=1.4e-14  Score=117.96  Aligned_cols=128  Identities=16%  Similarity=0.104  Sum_probs=99.0

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCC-CCC-CccEEeehhhhccCCh
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK-AIS-PAYAVLLKWILLDWND  188 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~~-~~D~~~~~~vlh~~~d  188 (259)
                      +....+|||||||+|.++..+++.  +.+++++|+ +.+++.+++.. ++.+..+|+.+ +.. .||+|++.+++|++++
T Consensus        41 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~-~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~  117 (211)
T 3e23_A           41 LPAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRL-GRPVRTMLFHQLDAIDAYDAVWAHACLLHVPR  117 (211)
T ss_dssp             SCTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHH-TSCCEECCGGGCCCCSCEEEEEECSCGGGSCH
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhc-CCceEEeeeccCCCCCcEEEEEecCchhhcCH
Confidence            455679999999999999999988  568999999 88888888532 67888999887 433 5999999999999998


Q ss_pred             HHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccCHHHHHHHHhcC
Q 041250          189 EECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAKIFADS  259 (259)
Q Consensus       189 ~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~e~~~ll~~a  259 (259)
                      ++...+|++++++|+|   ||++++...........        ...      ..-..++.++|+++++++
T Consensus       118 ~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~--------~~~------~~~~~~~~~~~~~~l~~a  171 (211)
T 3e23_A          118 DELADVLKLIWRALKP---GGLFYASYKSGEGEGRD--------KLA------RYYNYPSEEWLRARYAEA  171 (211)
T ss_dssp             HHHHHHHHHHHHHEEE---EEEEEEEEECCSSCEEC--------TTS------CEECCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCC---CcEEEEEEcCCCccccc--------ccc------hhccCCCHHHHHHHHHhC
Confidence            8889999999999999   89988875432221110        000      011346888998888753

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.55  E-value=4.4e-14  Score=118.77  Aligned_cols=101  Identities=6%  Similarity=-0.042  Sum_probs=86.2

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-C---------------------CCCeEEEeCCCCC
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-D---------------------LVNLKYVGGDMFK  169 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~---------------------~~ri~~~~~d~~~  169 (259)
                      ....+|||+|||+|..+..|++.  +.+++++|+ +.+++.|++ .                     ..+++|+.+|+++
T Consensus        67 ~~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~  144 (252)
T 2gb4_A           67 QSGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD  144 (252)
T ss_dssp             CCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred             CCCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence            35689999999999999999987  569999999 889988864 2                     2689999999998


Q ss_pred             -CC---CCccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 041250          170 -AI---SPAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIK  218 (259)
Q Consensus       170 -~~---~~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~  218 (259)
                       +.   ..||+|+.+.++|.+++++..+++++++++|+|   ||+++++....
T Consensus       145 l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~Lkp---GG~l~l~~~~~  194 (252)
T 2gb4_A          145 LPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRK---EFQYLVAVLSY  194 (252)
T ss_dssp             GGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEE---EEEEEEEEEEC
T ss_pred             CCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCC---CeEEEEEEEec
Confidence             43   359999999999999988788999999999999   99987665543

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.55  E-value=1.2e-14  Score=121.02  Aligned_cols=103  Identities=14%  Similarity=0.151  Sum_probs=90.2

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc--CCCCeEEEeCCCCC-CCC-------CccEEeeh
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES--DLVNLKYVGGDMFK-AIS-------PAYAVLLK  180 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~ri~~~~~d~~~-~~~-------~~D~~~~~  180 (259)
                      .....+|||||||+|.++..+++..+  +++++|+ +.+++.+++  ...+++++.+|+.+ +.+       .+|+|++.
T Consensus        54 ~~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~  131 (245)
T 3ggd_A           54 FNPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMR  131 (245)
T ss_dssp             SCTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEE
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEc
Confidence            45567899999999999999999987  7999999 889988887  44599999999998 322       28999999


Q ss_pred             hhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250          181 WILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKE  219 (259)
Q Consensus       181 ~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~  219 (259)
                      .++|++++++..+++++++++|+|   ||+++|.+...+
T Consensus       132 ~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~  167 (245)
T 3ggd_A          132 TGFHHIPVEKRELLGQSLRILLGK---QGAMYLIELGTG  167 (245)
T ss_dssp             SSSTTSCGGGHHHHHHHHHHHHTT---TCEEEEEEECTT
T ss_pred             chhhcCCHHHHHHHHHHHHHHcCC---CCEEEEEeCCcc
Confidence            999999988888999999999999   999999998544

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.54  E-value=1.4e-14  Score=117.56  Aligned_cols=143  Identities=12%  Similarity=0.060  Sum_probs=102.4

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCC-CCC--CccEEeehhhh
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-AIS--PAYAVLLKWIL  183 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~~~--~~D~~~~~~vl  183 (259)
                      .....+|||+|||+|.++..++.. ++.+++++|. +.+++.+++    ...+++++.+|+.+ +.+  .||+|++..++
T Consensus        21 ~~~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l   99 (209)
T 2p8j_A           21 SNLDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTI   99 (209)
T ss_dssp             SSSCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCG
T ss_pred             cCCCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChH
Confidence            345679999999999986555544 5679999999 888888776    34689999999988 554  49999999999


Q ss_pred             ccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhh-hhhhccCccccCHHHHHHHHhc
Q 041250          184 LDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEM-FMMVLLTGTERDEKEWAKIFAD  258 (259)
Q Consensus       184 h~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~-~m~~~~~g~~rt~~e~~~ll~~  258 (259)
                      |+++.++..+++++++++|+|   ||.+++.+...++.............+.. .......+..++.+|++++|++
T Consensus       100 ~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  172 (209)
T 2p8j_A          100 FHMRKNDVKEAIDEIKRVLKP---GGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKD  172 (209)
T ss_dssp             GGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTT
T ss_pred             HhCCHHHHHHHHHHHHHHcCC---CcEEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHHHhh
Confidence            999888888999999999999   99999988876554321100000000000 0000112356788999988865

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.54  E-value=1.7e-14  Score=122.94  Aligned_cols=136  Identities=15%  Similarity=0.125  Sum_probs=100.2

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-C-CC--CccEEeehhh
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-A-IS--PAYAVLLKWI  182 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~-~~--~~D~~~~~~v  182 (259)
                      +..+|||||||+|.++..+++.  +.+++++|+ +.+++.+++      ..++++++.+|+.+ + .+  .||+|++..+
T Consensus        68 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~  145 (285)
T 4htf_A           68 QKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAV  145 (285)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESC
T ss_pred             CCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECch
Confidence            3579999999999999999998  679999999 888888876      22789999999988 3 33  5999999999


Q ss_pred             hccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhh--------hccCccccCHHHHHH
Q 041250          183 LLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMM--------VLLTGTERDEKEWAK  254 (259)
Q Consensus       183 lh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~--------~~~~g~~rt~~e~~~  254 (259)
                      +|++++.  .++|++++++|+|   ||.+++.+..........   .....++...-        .......++.++|++
T Consensus       146 l~~~~~~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  217 (285)
T 4htf_A          146 LEWVADP--RSVLQTLWSVLRP---GGVLSLMFYNAHGLLMHN---MVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQVYL  217 (285)
T ss_dssp             GGGCSCH--HHHHHHHHHTEEE---EEEEEEEEEBHHHHHHHH---HHTTCHHHHHTTCCCC----CCCSCCBCHHHHHH
T ss_pred             hhcccCH--HHHHHHHHHHcCC---CeEEEEEEeCCchHHHHH---HHhcCHHHHhhhccccccccCCCCCCCCHHHHHH
Confidence            9999875  5799999999999   899988876433211000   00000111110        011235678999999


Q ss_pred             HHhcC
Q 041250          255 IFADS  259 (259)
Q Consensus       255 ll~~a  259 (259)
                      ++++|
T Consensus       218 ~l~~a  222 (285)
T 4htf_A          218 WLEEA  222 (285)
T ss_dssp             HHHHT
T ss_pred             HHHHC
Confidence            99875

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.54  E-value=7.2e-14  Score=117.71  Aligned_cols=107  Identities=13%  Similarity=0.162  Sum_probs=89.9

Q ss_pred             HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCC-CCC--CccEE
Q 041250          102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK-AIS--PAYAV  177 (259)
Q Consensus       102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~~--~~D~~  177 (259)
                      ..+++.++  ..+..+|||||||+|.++..+++  |+.+++++|+ +.+++.+++.. +++++.+|+.+ +.+  .||+|
T Consensus        24 ~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~d~~~~~~~~~~fD~v   98 (261)
T 3ege_A           24 NAIINLLN--LPKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHP-QVEWFTGYAENLALPDKSVDGV   98 (261)
T ss_dssp             HHHHHHHC--CCTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCT-TEEEECCCTTSCCSCTTCBSEE
T ss_pred             HHHHHHhC--CCCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhcc-CCEEEECchhhCCCCCCCEeEE
Confidence            44555555  56778999999999999999997  6889999999 88888888544 99999999988 655  59999


Q ss_pred             eehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250          178 LLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKE  219 (259)
Q Consensus       178 ~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~  219 (259)
                      ++.+++|++++.  .+++++++++|+    ||++++.+...+
T Consensus        99 ~~~~~l~~~~~~--~~~l~~~~~~Lk----gG~~~~~~~~~~  134 (261)
T 3ege_A           99 ISILAIHHFSHL--EKSFQEMQRIIR----DGTIVLLTFDIR  134 (261)
T ss_dssp             EEESCGGGCSSH--HHHHHHHHHHBC----SSCEEEEEECGG
T ss_pred             EEcchHhhccCH--HHHHHHHHHHhC----CcEEEEEEcCCc
Confidence            999999999764  589999999998    498999887543

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.54  E-value=9.5e-14  Score=117.43  Aligned_cols=150  Identities=12%  Similarity=0.063  Sum_probs=105.6

Q ss_pred             HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeec-hH------HHhhccc------CCCCeEEEeCC-
Q 041250          102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PH------VVNGLES------DLVNLKYVGGD-  166 (259)
Q Consensus       102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~------~~~~a~~------~~~ri~~~~~d-  166 (259)
                      ..+++.++  .....+|||||||+|.++..+++++ |+.+++++|+ +.      +++.+++      ..++++++.+| 
T Consensus        33 ~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  110 (275)
T 3bkx_A           33 LAIAEAWQ--VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTN  110 (275)
T ss_dssp             HHHHHHHT--CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCC
T ss_pred             HHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECCh
Confidence            34555555  6677899999999999999999996 8889999999 43      7777765      23689999998 


Q ss_pred             CCC---CCC--CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhh-hhhhhhhhhh
Q 041250          167 MFK---AIS--PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIET-QLFFEMFMMV  240 (259)
Q Consensus       167 ~~~---~~~--~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~-~~~~d~~m~~  240 (259)
                      +..   +++  .||+|++.+++|++++..  .+++.+++.++|   ||++++.+...+...... .... ..+....+..
T Consensus       111 ~~~~~~~~~~~~fD~v~~~~~l~~~~~~~--~~~~~~~~l~~~---gG~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  184 (275)
T 3bkx_A          111 LSDDLGPIADQHFDRVVLAHSLWYFASAN--ALALLFKNMAAV---CDHVDVAEWSMQPTALDQ-IGHLQAAMIQGLLYA  184 (275)
T ss_dssp             TTTCCGGGTTCCCSEEEEESCGGGSSCHH--HHHHHHHHHTTT---CSEEEEEEECSSCSSGGG-HHHHHHHHHHHHHHH
T ss_pred             hhhccCCCCCCCEEEEEEccchhhCCCHH--HHHHHHHHHhCC---CCEEEEEEecCCCCchhh-hhHHHHHHHHHHHhh
Confidence            543   333  499999999999998865  377777777777   999999998876553321 1000 0011111100


Q ss_pred             c------cCccccCHHHHHHHHhcC
Q 041250          241 L------LTGTERDEKEWAKIFADS  259 (259)
Q Consensus       241 ~------~~g~~rt~~e~~~ll~~a  259 (259)
                      .      .....++.++|++++++|
T Consensus       185 ~~~~~~~~~~~~~s~~~l~~~l~~a  209 (275)
T 3bkx_A          185 IAPSDVANIRTLITPDTLAQIAHDN  209 (275)
T ss_dssp             HSCCTTCSCCCCCCHHHHHHHHHHH
T ss_pred             ccccccccccccCCHHHHHHHHHHC
Confidence            0      112468899999998763

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.53  E-value=8.2e-14  Score=119.60  Aligned_cols=101  Identities=18%  Similarity=0.157  Sum_probs=87.5

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeec-hHHHhhccc----C---CCCeEEEeCCCCC-CC--------CCc
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES----D---LVNLKYVGGDMFK-AI--------SPA  174 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~----~---~~ri~~~~~d~~~-~~--------~~~  174 (259)
                      .+..+|||||||+|.++..+++.+ |..+++++|+ +.+++.+++    .   ..+++++.+|+.+ +.        ..|
T Consensus        35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  114 (299)
T 3g5t_A           35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI  114 (299)
T ss_dssp             SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCe
Confidence            467899999999999999999987 8899999999 888988876    2   6899999999987 42        249


Q ss_pred             cEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250          175 YAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKE  219 (259)
Q Consensus       175 D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~  219 (259)
                      |+|++..++|++ +  ..+++++++++|+|   ||.|++.+...+
T Consensus       115 D~V~~~~~l~~~-~--~~~~l~~~~~~Lkp---gG~l~i~~~~~~  153 (299)
T 3g5t_A          115 DMITAVECAHWF-D--FEKFQRSAYANLRK---DGTIAIWGYADP  153 (299)
T ss_dssp             EEEEEESCGGGS-C--HHHHHHHHHHHEEE---EEEEEEEEEEEE
T ss_pred             eEEeHhhHHHHh-C--HHHHHHHHHHhcCC---CcEEEEEecCCc
Confidence            999999999999 3  56899999999999   999999665543

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.53  E-value=1.1e-13  Score=116.01  Aligned_cols=96  Identities=13%  Similarity=0.126  Sum_probs=83.6

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCC-CCC--CccEEeehhhh
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-AIS--PAYAVLLKWIL  183 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~~~--~~D~~~~~~vl  183 (259)
                      .....+|||||||+|.++..+++.  +.+++++|+ +.+++.+++    ...+++++.+|+.+ +.+  .||+|++.+++
T Consensus        37 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l  114 (263)
T 2yqz_A           37 KGEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLW  114 (263)
T ss_dssp             SSSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCG
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCch
Confidence            456789999999999999999987  578999999 888888776    35799999999987 554  49999999999


Q ss_pred             ccCChHHHHHHHHHHHHhcccCCCCcEEEEE
Q 041250          184 LDWNDEECVKILKKCKEAITRDGKKRKVIIK  214 (259)
Q Consensus       184 h~~~d~~~~~il~~~~~~L~p~~~gg~lli~  214 (259)
                      |++++  ...++++++++|+|   ||.+++.
T Consensus       115 ~~~~~--~~~~l~~~~~~L~p---gG~l~~~  140 (263)
T 2yqz_A          115 HLVPD--WPKVLAEAIRVLKP---GGALLEG  140 (263)
T ss_dssp             GGCTT--HHHHHHHHHHHEEE---EEEEEEE
T ss_pred             hhcCC--HHHHHHHHHHHCCC---CcEEEEE
Confidence            99986  35899999999999   8998887

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.52  E-value=8.8e-14  Score=115.27  Aligned_cols=126  Identities=12%  Similarity=0.071  Sum_probs=89.4

Q ss_pred             chHHHHHHHHHHhcch----hhhHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc--
Q 041250           83 SKLNNFFNEAMASDAR----LATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES--  155 (259)
Q Consensus        83 ~~~~~~f~~~m~~~~~----~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--  155 (259)
                      |+..+.|...+.....    ...+.+...++  .....+|||||||+|.++..+++..+ .+++++|+ +.+++.+++  
T Consensus        10 ~~~~~~y~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~   86 (243)
T 3bkw_A           10 PDFFAGYSQLGRSIEGLDGAAEWPALRAMLP--EVGGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKMLARARAAG   86 (243)
T ss_dssp             ---------------CGGGCTTHHHHHHHSC--CCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTS
T ss_pred             HHHHHHHHHhccCCccHHHHHhHHHHHHhcc--ccCCCEEEEEcCcCCHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHhc
Confidence            4455555555443322    22344555555  45678999999999999999998832 38999999 888988887  


Q ss_pred             CCCCeEEEeCCCCC-CCC--CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          156 DLVNLKYVGGDMFK-AIS--PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       156 ~~~ri~~~~~d~~~-~~~--~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      ...+++++.+|+.+ +.+  .||+|++.+++|++++  ..++|++++++|+|   ||++++...
T Consensus        87 ~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~L~p---gG~l~~~~~  145 (243)
T 3bkw_A           87 PDTGITYERADLDKLHLPQDSFDLAYSSLALHYVED--VARLFRTVHQALSP---GGHFVFSTE  145 (243)
T ss_dssp             CSSSEEEEECCGGGCCCCTTCEEEEEEESCGGGCSC--HHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred             ccCCceEEEcChhhccCCCCCceEEEEeccccccch--HHHHHHHHHHhcCc---CcEEEEEeC
Confidence            33589999999987 554  5999999999999976  45899999999999   899988764

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.52  E-value=9.9e-14  Score=118.20  Aligned_cols=113  Identities=16%  Similarity=0.182  Sum_probs=94.5

Q ss_pred             HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCC-CCC-Cc
Q 041250          102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-AIS-PA  174 (259)
Q Consensus       102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~~~-~~  174 (259)
                      ..+++.++  .....+|||+|||+|.++..+++.  +.+++++|+ +.+++.+++    ...+++++.+|+.+ +.+ .|
T Consensus       110 ~~~~~~~~--~~~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~f  185 (286)
T 3m70_A          110 GDVVDAAK--IISPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENY  185 (286)
T ss_dssp             HHHHHHHH--HSCSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSCE
T ss_pred             HHHHHHhh--ccCCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCCc
Confidence            44555555  446789999999999999999998  569999999 888888876    23399999999988 444 59


Q ss_pred             cEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCC
Q 041250          175 YAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENR  221 (259)
Q Consensus       175 D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~  221 (259)
                      |+|++..++|+++++....+++++++.|+|   ||.++++.....++
T Consensus       186 D~i~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~  229 (286)
T 3m70_A          186 DFIVSTVVFMFLNRERVPSIIKNMKEHTNV---GGYNLIVAAMSTDD  229 (286)
T ss_dssp             EEEEECSSGGGSCGGGHHHHHHHHHHTEEE---EEEEEEEEEBCCSS
T ss_pred             cEEEEccchhhCCHHHHHHHHHHHHHhcCC---CcEEEEEEecCCCC
Confidence            999999999999988888999999999999   99988877665543

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.51  E-value=3.7e-14  Score=121.62  Aligned_cols=100  Identities=13%  Similarity=0.157  Sum_probs=84.7

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccC------C----------------------------
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESD------L----------------------------  157 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~----------------------------  157 (259)
                      ....+|||||||+|.++..+++.+|..+++++|+ +.+++.|++.      .                            
T Consensus        45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (292)
T 3g07_A           45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS  124 (292)
T ss_dssp             TTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred             cCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence            3568999999999999999999999999999999 8888887761      0                            


Q ss_pred             -----------------------------CCeEEEeCCCCCCC--------CCccEEeehhhhccC----ChHHHHHHHH
Q 041250          158 -----------------------------VNLKYVGGDMFKAI--------SPAYAVLLKWILLDW----NDEECVKILK  196 (259)
Q Consensus       158 -----------------------------~ri~~~~~d~~~~~--------~~~D~~~~~~vlh~~----~d~~~~~il~  196 (259)
                                                   .+|+|+.+|+....        ..||+|++..++|++    +++...++|+
T Consensus       125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~  204 (292)
T 3g07_A          125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFR  204 (292)
T ss_dssp             -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHH
Confidence                                         58999999998622        259999999998543    7788899999


Q ss_pred             HHHHhcccCCCCcEEEEEe
Q 041250          197 KCKEAITRDGKKRKVIIKD  215 (259)
Q Consensus       197 ~~~~~L~p~~~gg~lli~e  215 (259)
                      +++++|+|   ||+|++..
T Consensus       205 ~~~~~Lkp---GG~lil~~  220 (292)
T 3g07_A          205 RIYRHLRP---GGILVLEP  220 (292)
T ss_dssp             HHHHHEEE---EEEEEEEC
T ss_pred             HHHHHhCC---CcEEEEec
Confidence            99999999   88877643

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.51  E-value=3.8e-13  Score=107.24  Aligned_cols=99  Identities=17%  Similarity=0.197  Sum_probs=86.8

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCC-CCC--CccEEeeh-hhhccCC
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK-AIS--PAYAVLLK-WILLDWN  187 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~~--~~D~~~~~-~vlh~~~  187 (259)
                      ....+|||||||+|.++..+++.  +.+++++|+ +.+++.+++...+++++.+|+.+ +.+  .||+|++. .++|+++
T Consensus        45 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~  122 (195)
T 3cgg_A           45 PRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLA  122 (195)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCCGGGSC
T ss_pred             cCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECCcHHhhcC
Confidence            45679999999999999999988  568999999 88898888766789999999988 554  59999998 8999998


Q ss_pred             hHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          188 DEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       188 d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      +++...+|+++.+.|+|   ||.+++...
T Consensus       123 ~~~~~~~l~~~~~~l~~---~G~l~~~~~  148 (195)
T 3cgg_A          123 EDGREPALANIHRALGA---DGRAVIGFG  148 (195)
T ss_dssp             HHHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred             hHHHHHHHHHHHHHhCC---CCEEEEEeC
Confidence            88888999999999999   898888654

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.49  E-value=1e-13  Score=113.11  Aligned_cols=101  Identities=9%  Similarity=0.173  Sum_probs=85.9

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEeCCCCCCCC--CccEEeehhhhcc
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFKAIS--PAYAVLLKWILLD  185 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~~~~--~~D~~~~~~vlh~  185 (259)
                      .....+|||||||+|.++..+++..  .+++++|+ +.+++.+++   ..++++++.+|+.+..+  .||+|++.+++|+
T Consensus        49 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~  126 (216)
T 3ofk_A           49 SGAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVVAEVLYY  126 (216)
T ss_dssp             TSSEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEEEEESCGGG
T ss_pred             cCCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEEEEccHHHh
Confidence            3456799999999999999999885  48999999 888988887   34589999999998323  5999999999999


Q ss_pred             CCh-HHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250          186 WND-EECVKILKKCKEAITRDGKKRKVIIKDMI  217 (259)
Q Consensus       186 ~~d-~~~~~il~~~~~~L~p~~~gg~lli~e~~  217 (259)
                      +++ +...++|+++++.|+|   ||.+++..+.
T Consensus       127 ~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~  156 (216)
T 3ofk_A          127 LEDMTQMRTAIDNMVKMLAP---GGHLVFGSAR  156 (216)
T ss_dssp             SSSHHHHHHHHHHHHHTEEE---EEEEEEEEEC
T ss_pred             CCCHHHHHHHHHHHHHHcCC---CCEEEEEecC
Confidence            986 5567899999999999   8998887653

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.49  E-value=6.1e-14  Score=114.72  Aligned_cols=143  Identities=12%  Similarity=0.084  Sum_probs=101.8

Q ss_pred             HHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCCC-----CC--Cc
Q 041250          103 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKA-----IS--PA  174 (259)
Q Consensus       103 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~-----~~--~~  174 (259)
                      .+++.+.  .....+|||||||+|.++..+++.  +.+++++|+ +.+++.+++. .++.+..+|+.+.     .+  .|
T Consensus        43 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~f  117 (227)
T 3e8s_A           43 AILLAIL--GRQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAA-GAGEVHLASYAQLAEAKVPVGKDY  117 (227)
T ss_dssp             HHHHHHH--HTCCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHT-CSSCEEECCHHHHHTTCSCCCCCE
T ss_pred             HHHHHhh--cCCCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHh-cccccchhhHHhhcccccccCCCc
Confidence            4555555  455689999999999999999988  668999999 8889888855 7788888887651     12  39


Q ss_pred             cEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhh------ccCccccC
Q 041250          175 YAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMV------LLTGTERD  248 (259)
Q Consensus       175 D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~------~~~g~~rt  248 (259)
                      |+|++.+++| +.+  ...+|++++++|+|   ||++++.++........+ +  ...+.......      ......+|
T Consensus       118 D~v~~~~~l~-~~~--~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~  188 (227)
T 3e8s_A          118 DLICANFALL-HQD--IIELLSAMRTLLVP---GGALVIQTLHPWSVADGD-Y--QDGWREESFAGFAGDWQPMPWYFRT  188 (227)
T ss_dssp             EEEEEESCCC-SSC--CHHHHHHHHHTEEE---EEEEEEEECCTTTTCTTC-C--SCEEEEECCTTSSSCCCCEEEEECC
T ss_pred             cEEEECchhh-hhh--HHHHHHHHHHHhCC---CeEEEEEecCccccCccc-c--ccccchhhhhccccCcccceEEEec
Confidence            9999999999 554  34899999999999   999998886543332211 0  00111110100      11234579


Q ss_pred             HHHHHHHHhcC
Q 041250          249 EKEWAKIFADS  259 (259)
Q Consensus       249 ~~e~~~ll~~a  259 (259)
                      .++|.+++++|
T Consensus       189 ~~~~~~~l~~a  199 (227)
T 3e8s_A          189 LASWLNALDMA  199 (227)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHc
Confidence            99999999875

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.48  E-value=7.6e-14  Score=123.64  Aligned_cols=114  Identities=14%  Similarity=0.139  Sum_probs=92.0

Q ss_pred             HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-------------C-CCCeEEEeCC
Q 041250          102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-------------D-LVNLKYVGGD  166 (259)
Q Consensus       102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------~-~~ri~~~~~d  166 (259)
                      ..+++.+.  +....+|||||||+|.++..++...+..+++++|+ +.+++.|++             . .++|+|+.+|
T Consensus       163 ~~il~~l~--l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD  240 (438)
T 3uwp_A          163 AQMIDEIK--MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD  240 (438)
T ss_dssp             HHHHHHHC--CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECC
T ss_pred             HHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECc
Confidence            34555555  67788999999999999999999887767999999 677776653             1 3799999999


Q ss_pred             CCC-CC----CCccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCC
Q 041250          167 MFK-AI----SPAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKK  223 (259)
Q Consensus       167 ~~~-~~----~~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~  223 (259)
                      +++ ++    ..+|+|+++.+++ +  .+..+.|+++++.|+|   ||+|++.|.+.+++..
T Consensus       241 ~~~lp~~d~~~~aDVVf~Nn~~F-~--pdl~~aL~Ei~RvLKP---GGrIVssE~f~p~d~~  296 (438)
T 3uwp_A          241 FLSEEWRERIANTSVIFVNNFAF-G--PEVDHQLKERFANMKE---GGRIVSSKPFAPLNFR  296 (438)
T ss_dssp             TTSHHHHHHHHTCSEEEECCTTC-C--HHHHHHHHHHHTTSCT---TCEEEESSCSSCTTCC
T ss_pred             ccCCccccccCCccEEEEccccc-C--chHHHHHHHHHHcCCC---CcEEEEeecccCCCCC
Confidence            998 54    3599999887764 3  3356778999999999   9999999999887653

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.48  E-value=1.8e-13  Score=111.26  Aligned_cols=127  Identities=12%  Similarity=0.038  Sum_probs=95.6

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCC-eEEEeec-hHHHhhcccCCCCeEEEeCCCCC-CCC--CccEEeehhhhccCCh
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAFPKL-ECTCFDL-PHVVNGLESDLVNLKYVGGDMFK-AIS--PAYAVLLKWILLDWND  188 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~~--~~D~~~~~~vlh~~~d  188 (259)
                      ...+|||||||+|.++..+     +. +++++|+ +.+++.+++...+++++.+|+.+ +.+  .||+|++.+++|++++
T Consensus        36 ~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~  110 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVED  110 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTTCSC
T ss_pred             CCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhhcCC
Confidence            5679999999999999887     45 8999999 88888888755889999999987 554  4999999999999986


Q ss_pred             HHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhh---hccCccccCHHHHHHHHh
Q 041250          189 EECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMM---VLLTGTERDEKEWAKIFA  257 (259)
Q Consensus       189 ~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~---~~~~g~~rt~~e~~~ll~  257 (259)
                      .  .++|++++++|+|   ||++++.++...    .+ ...  ........   .....+.+|.++++++++
T Consensus       111 ~--~~~l~~~~~~L~p---gG~l~i~~~~~~----~~-~~~--~~~~~~~~~~~~~~~~~~~s~~~l~~~l~  170 (211)
T 2gs9_A          111 V--ERVLLEARRVLRP---GGALVVGVLEAL----SP-WAA--LYRRLGEKGVLPWAQARFLAREDLKALLG  170 (211)
T ss_dssp             H--HHHHHHHHHHEEE---EEEEEEEEECTT----SH-HHH--HHHHHHHTTCTTGGGCCCCCHHHHHHHHC
T ss_pred             H--HHHHHHHHHHcCC---CCEEEEEecCCc----Cc-HHH--HHHHHhhccCccccccccCCHHHHHHHhc
Confidence            4  5899999999999   899988876321    10 100  01110000   012456689999999874

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.47  E-value=6e-13  Score=107.75  Aligned_cols=106  Identities=10%  Similarity=0.151  Sum_probs=88.7

Q ss_pred             HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCCC---C
Q 041250          102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAI---S  172 (259)
Q Consensus       102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~---~  172 (259)
                      ..++..++  .....+|||+|||+|.++..+++.+|..+++++|+ +.+++.+++     ..++++++.+|+.+..   +
T Consensus        30 ~~~l~~l~--~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~  107 (204)
T 3e05_A           30 AVTLSKLR--LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLP  107 (204)
T ss_dssp             HHHHHHTT--CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSC
T ss_pred             HHHHHHcC--CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCC
Confidence            33455555  66778999999999999999999999999999999 888888876     3478999999997732   4


Q ss_pred             CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250          173 PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI  217 (259)
Q Consensus       173 ~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~  217 (259)
                      .||++++...++     ...++++++.+.|+|   ||++++....
T Consensus       108 ~~D~i~~~~~~~-----~~~~~l~~~~~~Lkp---gG~l~~~~~~  144 (204)
T 3e05_A          108 DPDRVFIGGSGG-----MLEEIIDAVDRRLKS---EGVIVLNAVT  144 (204)
T ss_dssp             CCSEEEESCCTT-----CHHHHHHHHHHHCCT---TCEEEEEECB
T ss_pred             CCCEEEECCCCc-----CHHHHHHHHHHhcCC---CeEEEEEecc
Confidence            699999988776     345899999999999   9999987654

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.47  E-value=4e-13  Score=113.43  Aligned_cols=137  Identities=19%  Similarity=0.203  Sum_probs=99.5

Q ss_pred             CCCCeEEEecCCc--hHHHHHHH-HHCCCCeEEEeec-hHHHhhccc---C--CCCeEEEeCCCCCCC-----C----Cc
Q 041250          113 EGLNSLVDVGGGT--GTAAKAIA-KAFPKLECTCFDL-PHVVNGLES---D--LVNLKYVGGDMFKAI-----S----PA  174 (259)
Q Consensus       113 ~~~~~vlDvGgG~--G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~---~--~~ri~~~~~d~~~~~-----~----~~  174 (259)
                      .+..+|||||||+  +.+..+++ +..|+.+++++|. |.|++.|++   .  ..+++|+.+|+.++.     |    .+
T Consensus        77 ~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~  156 (277)
T 3giw_A           77 AGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTL  156 (277)
T ss_dssp             SCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTC
T ss_pred             cCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhccccccccc
Confidence            3567999999997  33445554 4689999999999 999999987   1  347999999998731     1    24


Q ss_pred             c-----EEeehhhhccCChHH-HHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccC
Q 041250          175 Y-----AVLLKWILLDWNDEE-CVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERD  248 (259)
Q Consensus       175 D-----~~~~~~vlh~~~d~~-~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt  248 (259)
                      |     .+++..+||+.++++ ...++++++++|+|   ||.|++.+...+....     ....+.+.+-........||
T Consensus       157 D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~P---GG~Lvls~~~~d~~p~-----~~~~~~~~~~~~g~p~~~rs  228 (277)
T 3giw_A          157 DLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPS---GSYLAMSIGTAEFAPQ-----EVGRVAREYAARNMPMRLRT  228 (277)
T ss_dssp             CTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCT---TCEEEEEEECCTTSHH-----HHHHHHHHHHHTTCCCCCCC
T ss_pred             CcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCC---CcEEEEEeccCCCCHH-----HHHHHHHHHHhcCCCCccCC
Confidence            4     588889999999876 57899999999999   9999998876542211     11222332222222446789


Q ss_pred             HHHHHHHHh
Q 041250          249 EKEWAKIFA  257 (259)
Q Consensus       249 ~~e~~~ll~  257 (259)
                      .+|+.++|.
T Consensus       229 ~~ei~~~f~  237 (277)
T 3giw_A          229 HAEAEEFFE  237 (277)
T ss_dssp             HHHHHHTTT
T ss_pred             HHHHHHHhC
Confidence            999999874

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.47  E-value=3.6e-13  Score=110.35  Aligned_cols=154  Identities=13%  Similarity=0.136  Sum_probs=101.4

Q ss_pred             HHHHHHHhcchhhhHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCC
Q 041250           88 FFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGD  166 (259)
Q Consensus        88 ~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d  166 (259)
                      .|...+..+.......+++.++   .+..+|||||||+|.++..+++. + .+++++|+ +.+++.+++..  .+++.+|
T Consensus         9 ~y~~~~~~~~~~~~~~l~~~~~---~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~~--~~~~~~d   81 (230)
T 3cc8_A            9 LYEEKSGHYYNAVNPNLLKHIK---KEWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEKL--DHVVLGD   81 (230)
T ss_dssp             -----------CCCHHHHTTCC---TTCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTTS--SEEEESC
T ss_pred             hhhccchhHHHHHHHHHHHHhc---cCCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHhC--CcEEEcc
Confidence            3444444443334455665554   45679999999999999999988 4 89999999 88888887533  3788899


Q ss_pred             CCC---CCC--CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhh-hhh---
Q 041250          167 MFK---AIS--PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFF-EMF---  237 (259)
Q Consensus       167 ~~~---~~~--~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~-d~~---  237 (259)
                      +.+   +.+  .||+|++.+++|++++.  ..+++++++.|+|   ||.+++..+....   ..   ...... ...   
T Consensus        82 ~~~~~~~~~~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~L~~---gG~l~~~~~~~~~---~~---~~~~~~~~~~~~~  150 (230)
T 3cc8_A           82 IETMDMPYEEEQFDCVIFGDVLEHLFDP--WAVIEKVKPYIKQ---NGVILASIPNVSH---IS---VLAPLLAGNWTYT  150 (230)
T ss_dssp             TTTCCCCSCTTCEEEEEEESCGGGSSCH--HHHHHHTGGGEEE---EEEEEEEEECTTS---HH---HHHHHHTTCCCCB
T ss_pred             hhhcCCCCCCCccCEEEECChhhhcCCH--HHHHHHHHHHcCC---CCEEEEEeCCcch---HH---HHHHHhcCCceec
Confidence            875   333  49999999999999875  4899999999999   8999887643211   00   000000 000   


Q ss_pred             ---hhhccCccccCHHHHHHHHhcC
Q 041250          238 ---MMVLLTGTERDEKEWAKIFADS  259 (259)
Q Consensus       238 ---m~~~~~g~~rt~~e~~~ll~~a  259 (259)
                         .........++.++|+++++++
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~l~~~  175 (230)
T 3cc8_A          151 EYGLLDKTHIRFFTFNEMLRMFLKA  175 (230)
T ss_dssp             SSSTTBTTCCCCCCHHHHHHHHHHT
T ss_pred             cCCCCCcceEEEecHHHHHHHHHHc
Confidence               0001123568999999999864

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.47  E-value=8.5e-14  Score=118.87  Aligned_cols=108  Identities=14%  Similarity=0.113  Sum_probs=89.4

Q ss_pred             HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---------CCCCeEEEeCCCCC-C
Q 041250          102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---------DLVNLKYVGGDMFK-A  170 (259)
Q Consensus       102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~ri~~~~~d~~~-~  170 (259)
                      ..+.+.+.  ..+..+|||||||+|.++..+++..  .+++++|+ +.+++.+++         ...++.+..+|+.+ +
T Consensus        47 ~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~  122 (293)
T 3thr_A           47 AWLLGLLR--QHGCHRVLDVACGTGVDSIMLVEEG--FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLD  122 (293)
T ss_dssp             HHHHHHHH--HTTCCEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHH
T ss_pred             HHHHHHhc--ccCCCEEEEecCCCCHHHHHHHHCC--CeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCc
Confidence            44455555  4567899999999999999999984  48999999 888888864         13688999999987 4


Q ss_pred             ---CC--CccEEeeh-hhhccCCh-----HHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          171 ---IS--PAYAVLLK-WILLDWND-----EECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       171 ---~~--~~D~~~~~-~vlh~~~d-----~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                         ++  .||+|++. +++|++++     ++..++|++++++|+|   ||++++..+
T Consensus       123 ~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~  176 (293)
T 3thr_A          123 KDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRP---GGLLVIDHR  176 (293)
T ss_dssp             HHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred             cccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCC---CeEEEEEeC
Confidence               34  59999998 89999988     7788999999999999   899887764

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.46  E-value=3.2e-13  Score=115.57  Aligned_cols=133  Identities=11%  Similarity=0.118  Sum_probs=89.9

Q ss_pred             CCCeEEEecCCchHHHH----HHHHHCCCCeE--EEeec-hHHHhhccc------CCCCeEE--EeCCCCC-C------C
Q 041250          114 GLNSLVDVGGGTGTAAK----AIAKAFPKLEC--TCFDL-PHVVNGLES------DLVNLKY--VGGDMFK-A------I  171 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~----~l~~~~p~~~~--~~~D~-~~~~~~a~~------~~~ri~~--~~~d~~~-~------~  171 (259)
                      +..+|||||||+|.++.    .++.++|+.++  +++|. +++++.+++      ...++++  ..++..+ +      +
T Consensus        52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  131 (292)
T 2aot_A           52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKK  131 (292)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTT
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcccc
Confidence            34689999999997654    44566788854  99998 889988775      1235554  4555533 2      2


Q ss_pred             C--CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhcc---Cccc
Q 041250          172 S--PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLL---TGTE  246 (259)
Q Consensus       172 ~--~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~---~g~~  246 (259)
                      +  .||+|++++++|+++|.  .+.|++++++|+|   ||++++.+...  +  .+ .   ...+.-..-...   ....
T Consensus       132 ~~~~fD~V~~~~~l~~~~d~--~~~l~~~~r~Lkp---gG~l~i~~~~~--~--~~-~---~~~~~~~~~~~~~~~~~~~  198 (292)
T 2aot_A          132 ELQKWDFIHMIQMLYYVKDI--PATLKFFHSLLGT---NAKMLIIVVSG--S--SG-W---DKLWKKYGSRFPQDDLCQY  198 (292)
T ss_dssp             CCCCEEEEEEESCGGGCSCH--HHHHHHHHHTEEE---EEEEEEEEECT--T--SH-H---HHHHHHHGGGSCCCTTCCC
T ss_pred             CCCceeEEEEeeeeeecCCH--HHHHHHHHHHcCC---CcEEEEEEecC--C--cc-H---HHHHHHHHHhccCCCcccC
Confidence            2  49999999999999985  4789999999999   99999986431  1  10 1   111111110001   2346


Q ss_pred             cCHHHHHHHHhcC
Q 041250          247 RDEKEWAKIFADS  259 (259)
Q Consensus       247 rt~~e~~~ll~~a  259 (259)
                      ++.++|.++|+++
T Consensus       199 ~~~~~~~~~l~~a  211 (292)
T 2aot_A          199 ITSDDLTQMLDNL  211 (292)
T ss_dssp             CCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHC
Confidence            7899999998763

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.46  E-value=2.6e-13  Score=110.17  Aligned_cols=111  Identities=14%  Similarity=0.091  Sum_probs=89.8

Q ss_pred             HHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEeCCCCC-CCC--CccE
Q 041250          104 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFK-AIS--PAYA  176 (259)
Q Consensus       104 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~-~~~--~~D~  176 (259)
                      +.+.+...+....+|||||||+|.++..+++..+. +++++|+ +.+++.+++   ..++++++.+|+.+ +.+  .||+
T Consensus        32 ~~~~l~~~~~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~  110 (215)
T 2pxx_A           32 FRALLEPELRPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDV  110 (215)
T ss_dssp             HHHHHGGGCCTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEE
T ss_pred             HHHHHHHhcCCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccE
Confidence            33333323456789999999999999999998765 8999999 888888876   23689999999988 554  5999


Q ss_pred             EeehhhhccCC-------------hHHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 041250          177 VLLKWILLDWN-------------DEECVKILKKCKEAITRDGKKRKVIIKDMIK  218 (259)
Q Consensus       177 ~~~~~vlh~~~-------------d~~~~~il~~~~~~L~p~~~gg~lli~e~~~  218 (259)
                      |++..++|...             .+...++|+++.++|+|   ||++++.++..
T Consensus       111 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~~~~  162 (215)
T 2pxx_A          111 VLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVP---GGRFISMTSAA  162 (215)
T ss_dssp             EEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEE---EEEEEEEESCC
T ss_pred             EEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcC---CCEEEEEeCCC
Confidence            99988887654             44567899999999999   99999988654

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.45  E-value=1.8e-13  Score=116.21  Aligned_cols=97  Identities=13%  Similarity=0.236  Sum_probs=82.0

Q ss_pred             CCCeEEEecCCchH----HHHHHHHHCC----CCeEEEeec-hHHHhhcccC----------------------C-----
Q 041250          114 GLNSLVDVGGGTGT----AAKAIAKAFP----KLECTCFDL-PHVVNGLESD----------------------L-----  157 (259)
Q Consensus       114 ~~~~vlDvGgG~G~----~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~~----------------------~-----  157 (259)
                      +..+|+|+|||+|.    +++.+++..|    +.++++.|+ +.+++.|++.                      .     
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            35789999999999    6666777655    468999999 8999988761                      0     


Q ss_pred             ---------CCeEEEeCCCCC-CCC---CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEE
Q 041250          158 ---------VNLKYVGGDMFK-AIS---PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVII  213 (259)
Q Consensus       158 ---------~ri~~~~~d~~~-~~~---~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli  213 (259)
                               .+|.|..+|+.+ +++   +||+|++++++++++++...+++++++++|+|   ||.|++
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~p---gG~L~l  250 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKP---DGLLFA  250 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEE---EEEEEE
T ss_pred             ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCC---CcEEEE
Confidence                     379999999998 454   59999999999999998889999999999999   888766

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.45  E-value=3.6e-13  Score=127.70  Aligned_cols=101  Identities=12%  Similarity=0.146  Sum_probs=87.2

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeec-hHHHhhccc-----------CCCCeEEEeCCCCC-CCC--Ccc
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES-----------DLVNLKYVGGDMFK-AIS--PAY  175 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----------~~~ri~~~~~d~~~-~~~--~~D  175 (259)
                      ..+..+|||||||+|.++..+++.. |..+++++|+ +.+++.|++           ...+++|+.+|+.+ +.+  .||
T Consensus       719 ~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFD  798 (950)
T 3htx_A          719 ESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVD  798 (950)
T ss_dssp             HSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCC
T ss_pred             ccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCee
Confidence            3467899999999999999999998 5679999999 888988865           24689999999988 544  599


Q ss_pred             EEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          176 AVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       176 ~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      +|++..++|++++.....+++++++.|+|   | .++|..+
T Consensus       799 lVV~~eVLeHL~dp~l~~~L~eI~RvLKP---G-~LIISTP  835 (950)
T 3htx_A          799 IGTCLEVIEHMEEDQACEFGEKVLSLFHP---K-LLIVSTP  835 (950)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHTTCC---S-EEEEEEC
T ss_pred             EEEEeCchhhCChHHHHHHHHHHHHHcCC---C-EEEEEec
Confidence            99999999999998888999999999999   6 6666554

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.44  E-value=3.7e-13  Score=106.15  Aligned_cols=104  Identities=14%  Similarity=0.194  Sum_probs=84.5

Q ss_pred             HHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCC--C--
Q 041250          103 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKA--I--  171 (259)
Q Consensus       103 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~--~--  171 (259)
                      .+++.+.  .....+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++      ..+++ ++.+|..+.  .  
T Consensus        16 ~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~   92 (178)
T 3hm2_A           16 LAISALA--PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVP   92 (178)
T ss_dssp             HHHHHHC--CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCC
T ss_pred             HHHHHhc--ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccC
Confidence            3444555  55677999999999999999999999999999999 888888876      23488 888988763  2  


Q ss_pred             CCccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 041250          172 SPAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIK  218 (259)
Q Consensus       172 ~~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~  218 (259)
                      ..||+|++...+|+      ..+++++.+.|+|   ||++++.+...
T Consensus        93 ~~~D~i~~~~~~~~------~~~l~~~~~~L~~---gG~l~~~~~~~  130 (178)
T 3hm2_A           93 DNPDVIFIGGGLTA------PGVFAAAWKRLPV---GGRLVANAVTV  130 (178)
T ss_dssp             SCCSEEEECC-TTC------TTHHHHHHHTCCT---TCEEEEEECSH
T ss_pred             CCCCEEEECCcccH------HHHHHHHHHhcCC---CCEEEEEeecc
Confidence            35999999999987      4689999999999   99998877543

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.43  E-value=8.4e-13  Score=111.22  Aligned_cols=108  Identities=12%  Similarity=0.029  Sum_probs=83.6

Q ss_pred             hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-CCC---CeEEEeCCC--CCCC-C
Q 041250          101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-DLV---NLKYVGGDM--FKAI-S  172 (259)
Q Consensus       101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~---ri~~~~~d~--~~~~-~  172 (259)
                      ...+++.++  .....+|||||||+|.++..++++  ..+++++|+ +.+++.+++ ...   .+.+...+.  .... .
T Consensus        34 ~~~il~~l~--l~~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~  109 (261)
T 3iv6_A           34 RENDIFLEN--IVPGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAG  109 (261)
T ss_dssp             HHHHHHTTT--CCTTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTT
T ss_pred             HHHHHHhcC--CCCcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCC
Confidence            355666666  677789999999999999999987  468999999 889998887 222   222222232  0111 2


Q ss_pred             CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          173 PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       173 ~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      .||+|++..++|+++.++...++++++++| |   ||++++.-.
T Consensus       110 ~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-P---GG~l~lS~~  149 (261)
T 3iv6_A          110 HFDFVLNDRLINRFTTEEARRACLGMLSLV-G---SGTVRASVK  149 (261)
T ss_dssp             CCSEEEEESCGGGSCHHHHHHHHHHHHHHH-T---TSEEEEEEE
T ss_pred             CccEEEEhhhhHhCCHHHHHHHHHHHHHhC-c---CcEEEEEec
Confidence            599999999999999988899999999999 9   999887654

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.42  E-value=1.1e-12  Score=109.34  Aligned_cols=98  Identities=19%  Similarity=0.319  Sum_probs=82.1

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCC-CCC-CccEEeeh-hhh
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-AIS-PAYAVLLK-WIL  183 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~~~-~~D~~~~~-~vl  183 (259)
                      ..+..+|||+|||+|.++..+++.  +.+++++|+ +.+++.+++    ...+++++.+|+.+ +.+ .||+|++. ..+
T Consensus        39 ~~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~  116 (252)
T 1wzn_A           39 KREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTI  116 (252)
T ss_dssp             SSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEEEEECSSGG
T ss_pred             ccCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCCccEEEEcCCch
Confidence            345679999999999999999987  568999999 888888876    34589999999988 544 59999976 466


Q ss_pred             ccCChHHHHHHHHHHHHhcccCCCCcEEEEE
Q 041250          184 LDWNDEECVKILKKCKEAITRDGKKRKVIIK  214 (259)
Q Consensus       184 h~~~d~~~~~il~~~~~~L~p~~~gg~lli~  214 (259)
                      |+++.++..++|++++++|+|   ||.+++.
T Consensus       117 ~~~~~~~~~~~l~~~~~~L~p---gG~li~~  144 (252)
T 1wzn_A          117 MYFDEEDLRKLFSKVAEALKP---GGVFITD  144 (252)
T ss_dssp             GGSCHHHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred             hcCCHHHHHHHHHHHHHHcCC---CeEEEEe
Confidence            777877888999999999999   8887653

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.42  E-value=6.9e-13  Score=109.83  Aligned_cols=95  Identities=14%  Similarity=0.131  Sum_probs=81.8

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCC-CCC-CccEEeehh-hhcc
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-AIS-PAYAVLLKW-ILLD  185 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~~~-~~D~~~~~~-vlh~  185 (259)
                      ...+|||||||+|.++..+++.  +.+++++|+ +.+++.+++    ...+++++.+|+.+ +.+ .||+|++.+ ++|+
T Consensus        37 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~  114 (246)
T 1y8c_A           37 VFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNY  114 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGG
T ss_pred             CCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCccCCceEEEEcCccccc
Confidence            5679999999999999999988  468999999 888888876    23389999999987 554 599999998 9999


Q ss_pred             CCh-HHHHHHHHHHHHhcccCCCCcEEEE
Q 041250          186 WND-EECVKILKKCKEAITRDGKKRKVII  213 (259)
Q Consensus       186 ~~d-~~~~~il~~~~~~L~p~~~gg~lli  213 (259)
                      +++ ++..++|++++++|+|   ||.+++
T Consensus       115 ~~~~~~~~~~l~~~~~~L~p---gG~l~~  140 (246)
T 1y8c_A          115 IIDSDDLKKYFKAVSNHLKE---GGVFIF  140 (246)
T ss_dssp             CCSHHHHHHHHHHHHTTEEE---EEEEEE
T ss_pred             cCCHHHHHHHHHHHHHhcCC---CcEEEE
Confidence            854 6778999999999999   888776

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.42  E-value=1.2e-12  Score=107.09  Aligned_cols=125  Identities=11%  Similarity=0.067  Sum_probs=93.7

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCC-CCC--CccEEeehhhhccCChHH
Q 041250          115 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK-AIS--PAYAVLLKWILLDWNDEE  190 (259)
Q Consensus       115 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~~--~~D~~~~~~vlh~~~d~~  190 (259)
                      ..+|||||||+|.++..+++.      +++|+ +.+++.+++.  +++++.+|+.+ +.+  .||+|++.+++|++++. 
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~--~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~-  118 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR--GVFVLKGTAENLPLKDESFDFALMVTTICFVDDP-  118 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT--TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCH-
T ss_pred             CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc--CCEEEEcccccCCCCCCCeeEEEEcchHhhccCH-
Confidence            679999999999999988665      99999 8888888855  79999999987 554  49999999999999764 


Q ss_pred             HHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhh--hhccCccccCHHHHHHHHhcC
Q 041250          191 CVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFM--MVLLTGTERDEKEWAKIFADS  259 (259)
Q Consensus       191 ~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m--~~~~~g~~rt~~e~~~ll~~a  259 (259)
                       ..+|+++.++|+|   ||.+++.+....    .+ ...  .......  ........++.++|+++++++
T Consensus       119 -~~~l~~~~~~L~p---gG~l~i~~~~~~----~~-~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  178 (219)
T 1vlm_A          119 -ERALKEAYRILKK---GGYLIVGIVDRE----SF-LGR--EYEKNKEKSVFYKNARFFSTEELMDLMRKA  178 (219)
T ss_dssp             -HHHHHHHHHHEEE---EEEEEEEEECSS----SH-HHH--HHHHTTTC-CCSTTCCCCCHHHHHHHHHHT
T ss_pred             -HHHHHHHHHHcCC---CcEEEEEEeCCc----cH-HHH--HHHHHhcCcchhcccccCCHHHHHHHHHHC
Confidence             5899999999999   899988875321    10 100  1111100  001234668999999999864

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.40  E-value=1.4e-12  Score=115.69  Aligned_cols=108  Identities=15%  Similarity=0.196  Sum_probs=87.8

Q ss_pred             HHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----C---CCCeEEEeCCCCCCCC-
Q 041250          103 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----D---LVNLKYVGGDMFKAIS-  172 (259)
Q Consensus       103 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~---~~ri~~~~~d~~~~~~-  172 (259)
                      .+++.++  .....+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++     .   ..+++|+.+|++++.+ 
T Consensus       213 ~ll~~l~--~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~  290 (375)
T 4dcm_A          213 FFMQHLP--ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEP  290 (375)
T ss_dssp             HHHHTCC--CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCT
T ss_pred             HHHHhCc--ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCC
Confidence            4566666  44458999999999999999999999999999999 888888876     1   1368999999999655 


Q ss_pred             -CccEEeehhhhcc---CChHHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250          173 -PAYAVLLKWILLD---WNDEECVKILKKCKEAITRDGKKRKVIIKD  215 (259)
Q Consensus       173 -~~D~~~~~~vlh~---~~d~~~~~il~~~~~~L~p~~~gg~lli~e  215 (259)
                       .||+|++...+|.   .++....++++++.+.|+|   ||+++++.
T Consensus       291 ~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~iv~  334 (375)
T 4dcm_A          291 FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKI---NGELYIVA  334 (375)
T ss_dssp             TCEEEEEECCCC-------CCHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred             CCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCC---CcEEEEEE
Confidence             5999999988885   3455566899999999999   89998864

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.39  E-value=1.2e-12  Score=108.34  Aligned_cols=95  Identities=21%  Similarity=0.281  Sum_probs=81.0

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCC-CCC-CccEEeehh-hhc
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-AIS-PAYAVLLKW-ILL  184 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~~~-~~D~~~~~~-vlh  184 (259)
                      ....+|||||||+|.++..+++.   .+++++|+ +.+++.+++    ...+++++.+|+.+ +.+ .||+|++.. ++|
T Consensus        32 ~~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~  108 (243)
T 3d2l_A           32 EPGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITILCDSLN  108 (243)
T ss_dssp             CTTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCEEEEEECTTGGG
T ss_pred             CCCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCcCEEEEeCCchh
Confidence            34589999999999999999887   68999999 888888876    34689999999987 454 599999886 888


Q ss_pred             cC-ChHHHHHHHHHHHHhcccCCCCcEEEE
Q 041250          185 DW-NDEECVKILKKCKEAITRDGKKRKVII  213 (259)
Q Consensus       185 ~~-~d~~~~~il~~~~~~L~p~~~gg~lli  213 (259)
                      ++ +.++..++|++++++|+|   ||++++
T Consensus       109 ~~~~~~~~~~~l~~~~~~L~p---gG~l~~  135 (243)
T 3d2l_A          109 YLQTEADVKQTFDSAARLLTD---GGKLLF  135 (243)
T ss_dssp             GCCSHHHHHHHHHHHHHHEEE---EEEEEE
T ss_pred             hcCCHHHHHHHHHHHHHhcCC---CeEEEE
Confidence            88 556778999999999999   888776

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.39  E-value=5.5e-13  Score=116.87  Aligned_cols=110  Identities=15%  Similarity=0.203  Sum_probs=90.7

Q ss_pred             HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCCCCC-Ccc
Q 041250          102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFKAIS-PAY  175 (259)
Q Consensus       102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~~~~-~~D  175 (259)
                      ..+++.++  .....+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++    ...+++++.+|+++..+ .||
T Consensus       186 ~~ll~~l~--~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD  263 (343)
T 2pjd_A          186 QLLLSTLT--PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRFD  263 (343)
T ss_dssp             HHHHHHSC--TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSCEE
T ss_pred             HHHHHhcC--cCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccCCee
Confidence            45566664  33456899999999999999999999999999999 788888876    34457889999987434 699


Q ss_pred             EEeehhhhcc---CChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          176 AVLLKWILLD---WNDEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       176 ~~~~~~vlh~---~~d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      +|++..++|+   ++.+...+++++++++|+|   ||+++++..
T Consensus       264 ~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~  304 (343)
T 2pjd_A          264 MIISNPPFHDGMQTSLDAAQTLIRGAVRHLNS---GGELRIVAN  304 (343)
T ss_dssp             EEEECCCCCSSSHHHHHHHHHHHHHHGGGEEE---EEEEEEEEE
T ss_pred             EEEECCCcccCccCCHHHHHHHHHHHHHhCCC---CcEEEEEEc
Confidence            9999999986   3456678999999999999   999998765

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.39  E-value=1.5e-12  Score=111.04  Aligned_cols=102  Identities=12%  Similarity=0.059  Sum_probs=86.1

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-CC-C--CccEEeeh
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AI-S--PAYAVLLK  180 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~-~--~~D~~~~~  180 (259)
                      .....+|||||||+|.++..+++. +..+++++|+ +.+++.+++      ...+++++.+|+.+ +. +  .||+|++.
T Consensus        62 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~  140 (298)
T 1ri5_A           62 TKRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQ  140 (298)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred             CCCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEEC
Confidence            355689999999999999998876 4568999999 888888876      22579999999998 55 3  49999999


Q ss_pred             hhhcc--CChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250          181 WILLD--WNDEECVKILKKCKEAITRDGKKRKVIIKDMI  217 (259)
Q Consensus       181 ~vlh~--~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~  217 (259)
                      .++|+  .+.++..++|++++++|+|   ||++++..+.
T Consensus       141 ~~l~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~  176 (298)
T 1ri5_A          141 FSFHYAFSTSESLDIAQRNIARHLRP---GGYFIMTVPS  176 (298)
T ss_dssp             SCGGGGGSSHHHHHHHHHHHHHTEEE---EEEEEEEEEC
T ss_pred             chhhhhcCCHHHHHHHHHHHHHhcCC---CCEEEEEECC
Confidence            99998  6677788999999999999   8999887754

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.39  E-value=3.5e-12  Score=101.49  Aligned_cols=108  Identities=14%  Similarity=0.248  Sum_probs=88.1

Q ss_pred             HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCC--CeEEEeCCCCCCCC-
Q 041250          102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLV--NLKYVGGDMFKAIS-  172 (259)
Q Consensus       102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~--ri~~~~~d~~~~~~-  172 (259)
                      ..+++.+.  ..+..+|||+|||+|.++..+++.  ..+++++|+ +.+++.+++     ...  |++++.+|+.++.+ 
T Consensus        42 ~~l~~~~~--~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~  117 (194)
T 1dus_A           42 KILVENVV--VDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKD  117 (194)
T ss_dssp             HHHHHHCC--CCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTT
T ss_pred             HHHHHHcc--cCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhccccc
Confidence            44555555  556789999999999999999988  679999999 888888776     223  49999999988543 


Q ss_pred             -CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250          173 -PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI  217 (259)
Q Consensus       173 -~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~  217 (259)
                       .||+|++...+| +..+....+++++.+.|+|   ||++++....
T Consensus       118 ~~~D~v~~~~~~~-~~~~~~~~~l~~~~~~L~~---gG~l~~~~~~  159 (194)
T 1dus_A          118 RKYNKIITNPPIR-AGKEVLHRIIEEGKELLKD---NGEIWVVIQT  159 (194)
T ss_dssp             SCEEEEEECCCST-TCHHHHHHHHHHHHHHEEE---EEEEEEEEES
T ss_pred             CCceEEEECCCcc-cchhHHHHHHHHHHHHcCC---CCEEEEEECC
Confidence             599999988877 4455677899999999999   8999888764

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.37  E-value=1.9e-12  Score=110.40  Aligned_cols=97  Identities=9%  Similarity=0.161  Sum_probs=81.2

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-CCCCccEEeehhhhc
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AISPAYAVLLKWILL  184 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~~~~~D~~~~~~vlh  184 (259)
                      +..+.+|||||||+|.++..++.+.|+.+++++|+ |++++.|++     ..++++|+.+|..+ +..+||+|++...  
T Consensus       120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~d~~FDvV~~~a~--  197 (298)
T 3fpf_A          120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVIDGLEFDVLMVAAL--  197 (298)
T ss_dssp             CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGGGCCCSEEEECTT--
T ss_pred             CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCCCCCcCEEEECCC--
Confidence            56789999999999988877777778999999999 999999887     23899999999987 5346999998654  


Q ss_pred             cCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          185 DWNDEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       185 ~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                       .++  ..+++++++++|+|   ||+|++.+.
T Consensus       198 -~~d--~~~~l~el~r~LkP---GG~Lvv~~~  223 (298)
T 3fpf_A          198 -AEP--KRRVFRNIHRYVDT---ETRIIYRTY  223 (298)
T ss_dssp             -CSC--HHHHHHHHHHHCCT---TCEEEEEEC
T ss_pred             -ccC--HHHHHHHHHHHcCC---CcEEEEEcC
Confidence             233  45899999999999   999998874

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.36  E-value=4e-12  Score=101.14  Aligned_cols=104  Identities=13%  Similarity=0.156  Sum_probs=78.1

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC--CC-C-CccEEeeh-
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK--AI-S-PAYAVLLK-  180 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~--~~-~-~~D~~~~~-  180 (259)
                      +....+|||+|||+|.++..++++  ..+++++|+ +.+++.|++     ..++++++..|...  +. + .||+|++. 
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~   97 (185)
T 3mti_A           20 LDDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNL   97 (185)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEE
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeC
Confidence            456789999999999999999988  789999999 899988876     33899999977765  13 3 49999876 


Q ss_pred             hhhccC------ChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecC
Q 041250          181 WILLDW------NDEECVKILKKCKEAITRDGKKRKVIIKDMIKEN  220 (259)
Q Consensus       181 ~vlh~~------~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~  220 (259)
                      ..++..      ..+....+++++.+.|+|   ||++++..+...+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~  140 (185)
T 3mti_A           98 GYLPSADKSVITKPHTTLEAIEKILDRLEV---GGRLAIMIYYGHD  140 (185)
T ss_dssp             C-----------CHHHHHHHHHHHHHHEEE---EEEEEEEEC----
T ss_pred             CCCCCcchhcccChhhHHHHHHHHHHhcCC---CcEEEEEEeCCCC
Confidence            333320      235567889999999999   9999988765443

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.36  E-value=6e-12  Score=108.66  Aligned_cols=111  Identities=14%  Similarity=0.134  Sum_probs=86.4

Q ss_pred             HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccC------------CCCeEEEeCCCC
Q 041250          102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESD------------LVNLKYVGGDMF  168 (259)
Q Consensus       102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------------~~ri~~~~~d~~  168 (259)
                      ..+++.+........+|||||||+|.++..+++. +..+++++|+ +.+++.+++.            ..+++++.+|+.
T Consensus        22 ~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~  100 (313)
T 3bgv_A           22 GEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSS  100 (313)
T ss_dssp             HHHHHHHHHTC--CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTT
T ss_pred             HHHHHHhhhccCCCCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEeccc
Confidence            3344444322245789999999999999999884 5779999999 8888887761            237999999998


Q ss_pred             C-C----C--C--CccEEeehhhhccC--ChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          169 K-A----I--S--PAYAVLLKWILLDW--NDEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       169 ~-~----~--~--~~D~~~~~~vlh~~--~d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      + +    +  +  .||+|++..++|..  +.++...+|++++++|+|   ||.+++..+
T Consensus       101 ~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~~  156 (313)
T 3bgv_A          101 KELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSP---GGYFIGTTP  156 (313)
T ss_dssp             TSCSTTTCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEE---EEEEEEEEE
T ss_pred             ccchhhhcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCC---CcEEEEecC
Confidence            7 3    3  2  59999999999986  346677999999999999   898888765

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.35  E-value=4.2e-12  Score=102.32  Aligned_cols=95  Identities=13%  Similarity=0.120  Sum_probs=80.0

Q ss_pred             eEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCC-CCC--CccEEeehhhhccCCh
Q 041250          117 SLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-AIS--PAYAVLLKWILLDWND  188 (259)
Q Consensus       117 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~~~--~~D~~~~~~vlh~~~d  188 (259)
                      +|||||||+|.++..+++.  +.+++++|+ +.+++.+++    ...+++++.+|+.+ +.+  .||+|++.  +++++.
T Consensus        32 ~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~--~~~~~~  107 (202)
T 2kw5_A           32 KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSI--FCHLPS  107 (202)
T ss_dssp             EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEE--CCCCCH
T ss_pred             CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEE--hhcCCH
Confidence            9999999999999999887  569999999 888888876    23489999999988 554  59999984  344577


Q ss_pred             HHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 041250          189 EECVKILKKCKEAITRDGKKRKVIIKDMIK  218 (259)
Q Consensus       189 ~~~~~il~~~~~~L~p~~~gg~lli~e~~~  218 (259)
                      ++...++++++++|+|   ||.+++.++..
T Consensus       108 ~~~~~~l~~~~~~L~p---gG~l~~~~~~~  134 (202)
T 2kw5_A          108 SLRQQLYPKVYQGLKP---GGVFILEGFAP  134 (202)
T ss_dssp             HHHHHHHHHHHTTCCS---SEEEEEEEECT
T ss_pred             HHHHHHHHHHHHhcCC---CcEEEEEEecc
Confidence            7788999999999999   99999888753

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.33  E-value=1.8e-12  Score=103.34  Aligned_cols=97  Identities=14%  Similarity=0.065  Sum_probs=78.2

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CC--CCeEEEeCCCCC-CCC-CccEEeehhh
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DL--VNLKYVGGDMFK-AIS-PAYAVLLKWI  182 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~--~ri~~~~~d~~~-~~~-~~D~~~~~~v  182 (259)
                      +....+|||+|||+|.++..++...|+.+++++|+ +.+++.+++    ..  .++++  .|..+ +.+ .||+++...+
T Consensus        47 l~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~~~~~DvVLa~k~  124 (200)
T 3fzg_A           47 IKHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVYKGTYDVVFLLKM  124 (200)
T ss_dssp             SCCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHTTSEEEEEEEETC
T ss_pred             cCCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCCCCCcChhhHhhH
Confidence            46688999999999999999999999999999999 899998887    22  25666  67766 333 4999999999


Q ss_pred             hccCChHHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250          183 LLDWNDEECVKILKKCKEAITRDGKKRKVIIKD  215 (259)
Q Consensus       183 lh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e  215 (259)
                      +|.. ++ ....+.++.++|+|   ||.++-.+
T Consensus       125 LHlL-~~-~~~al~~v~~~L~p---ggvfISfp  152 (200)
T 3fzg_A          125 LPVL-KQ-QDVNILDFLQLFHT---QNFVISFP  152 (200)
T ss_dssp             HHHH-HH-TTCCHHHHHHTCEE---EEEEEEEE
T ss_pred             HHhh-hh-hHHHHHHHHHHhCC---CCEEEEeC
Confidence            9999 33 34566699999999   55555444

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.33  E-value=1.1e-11  Score=101.16  Aligned_cols=98  Identities=18%  Similarity=0.251  Sum_probs=79.2

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-C--CC--CccEEeehhh
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-A--IS--PAYAVLLKWI  182 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~--~~--~~D~~~~~~v  182 (259)
                      ...+|||||||+|.++..+++.+|+.+++++|+ +.+++.|++     ..++++++.+|+.+ +  ++  .+|+|++...
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~  120 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS  120 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence            457899999999999999999999999999999 888888876     34799999999987 3  44  4999998754


Q ss_pred             hccCChH-------HHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250          183 LLDWNDE-------ECVKILKKCKEAITRDGKKRKVIIKD  215 (259)
Q Consensus       183 lh~~~d~-------~~~~il~~~~~~L~p~~~gg~lli~e  215 (259)
                      .+ |...       ....+++++.++|+|   ||.+++..
T Consensus       121 ~~-~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~  156 (214)
T 1yzh_A          121 DP-WPKKRHEKRRLTYKTFLDTFKRILPE---NGEIHFKT  156 (214)
T ss_dssp             CC-CCSGGGGGGSTTSHHHHHHHHHHSCT---TCEEEEEE
T ss_pred             CC-ccccchhhhccCCHHHHHHHHHHcCC---CcEEEEEe
Confidence            32 2211       124799999999999   89887753

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.32  E-value=7.5e-12  Score=101.90  Aligned_cols=94  Identities=14%  Similarity=0.215  Sum_probs=74.1

Q ss_pred             HHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhcccCCCCeEEEeCCCCC-CCC--CccEEee
Q 041250          103 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFK-AIS--PAYAVLL  179 (259)
Q Consensus       103 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~-~~~--~~D~~~~  179 (259)
                      .+++.+.. .....+|||||||+|.++..+.     .+++++|+.+.         +++++.+|+.+ +.+  .||+|++
T Consensus        57 ~~~~~l~~-~~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~---------~~~~~~~d~~~~~~~~~~fD~v~~  121 (215)
T 2zfu_A           57 RIARDLRQ-RPASLVVADFGCGDCRLASSIR-----NPVHCFDLASL---------DPRVTVCDMAQVPLEDESVDVAVF  121 (215)
T ss_dssp             HHHHHHHT-SCTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS---------STTEEESCTTSCSCCTTCEEEEEE
T ss_pred             HHHHHHhc-cCCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC---------CceEEEeccccCCCCCCCEeEEEE
Confidence            34444431 3456799999999999998873     57999998433         67889999987 554  4999999


Q ss_pred             hhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250          180 KWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI  217 (259)
Q Consensus       180 ~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~  217 (259)
                      .+++| +++  ...+|++++++|+|   ||++++.+..
T Consensus       122 ~~~l~-~~~--~~~~l~~~~~~L~~---gG~l~i~~~~  153 (215)
T 2zfu_A          122 CLSLM-GTN--IRDFLEEANRVLKP---GGLLKVAEVS  153 (215)
T ss_dssp             ESCCC-SSC--HHHHHHHHHHHEEE---EEEEEEEECG
T ss_pred             ehhcc-ccC--HHHHHHHHHHhCCC---CeEEEEEEcC
Confidence            99998 443  46899999999999   9999998864

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.32  E-value=3.9e-12  Score=116.16  Aligned_cols=106  Identities=10%  Similarity=0.060  Sum_probs=87.5

Q ss_pred             HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhccc------CCCCeEEEeCCCCC-CCC-C
Q 041250          102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES------DLVNLKYVGGDMFK-AIS-P  173 (259)
Q Consensus       102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~d~~~-~~~-~  173 (259)
                      ..+++.+.  ..+..+|||||||+|.++..+++ .|..+++++|++++++.|++      ..++|+++.+|+.+ +.+ +
T Consensus       148 ~~il~~l~--~~~~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~  224 (480)
T 3b3j_A          148 RAILQNHT--DFKDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQ  224 (480)
T ss_dssp             HHHHHTGG--GTTTCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSC
T ss_pred             HHHHHhhh--hcCCCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccCCC
Confidence            34555554  45568999999999999998887 57789999999668777765      34799999999998 665 5


Q ss_pred             ccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEE
Q 041250          174 AYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVII  213 (259)
Q Consensus       174 ~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli  213 (259)
                      ||+|++..++|++.++.....+.++++.|+|   ||.+++
T Consensus       225 fD~Ivs~~~~~~~~~e~~~~~l~~~~~~Lkp---gG~li~  261 (480)
T 3b3j_A          225 VDIIISEPMGYMLFNERMLESYLHAKKYLKP---SGNMFP  261 (480)
T ss_dssp             EEEEECCCCHHHHTCHHHHHHHHHGGGGEEE---EEEEES
T ss_pred             eEEEEEeCchHhcCcHHHHHHHHHHHHhcCC---CCEEEE
Confidence            9999998888888888788889999999999   888774

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.32  E-value=1e-12  Score=109.14  Aligned_cols=98  Identities=12%  Similarity=0.024  Sum_probs=77.7

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCC---CCC--CccEEee---
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK---AIS--PAYAVLL---  179 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~---~~~--~~D~~~~---  179 (259)
                      ....+|||||||+|..+..+++..|. +++++|+ |.+++.|++    ...+++++.+|...   +.+  .||.|++   
T Consensus        59 ~~G~rVLdiG~G~G~~~~~~~~~~~~-~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~  137 (236)
T 3orh_A           59 SKGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY  137 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHTTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred             cCCCeEEEECCCccHHHHHHHHhCCc-EEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeee
Confidence            45679999999999999999988775 8999999 999998886    56788899988754   344  4888764   


Q ss_pred             --hhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          180 --KWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       180 --~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                        ...++++++  ...++++++++|+|   ||++++++.
T Consensus       138 ~~~~~~~~~~~--~~~~~~e~~rvLkP---GG~l~f~~~  171 (236)
T 3orh_A          138 PLSEETWHTHQ--FNFIKNHAFRLLKP---GGVLTYCNL  171 (236)
T ss_dssp             CCBGGGTTTHH--HHHHHHTHHHHEEE---EEEEEECCH
T ss_pred             ecccchhhhcc--hhhhhhhhhheeCC---CCEEEEEec
Confidence              444555544  45899999999999   999887664

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.32  E-value=4.4e-12  Score=109.28  Aligned_cols=99  Identities=9%  Similarity=0.086  Sum_probs=77.0

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCC-------CeEEEeCCCCC---------CCC
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLV-------NLKYVGGDMFK---------AIS  172 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~-------ri~~~~~d~~~---------~~~  172 (259)
                      ...+|||||||+|..+..+++.. ..+++++|+ +.+++.|++    ...       +++|...|+..         +.+
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~-~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~  126 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGE-IALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY  126 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred             CCCeEEEEecCCcHhHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence            46799999999998777666543 458999999 899999887    111       26788888722         223


Q ss_pred             --CccEEeehhhhcc-CChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          173 --PAYAVLLKWILLD-WNDEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       173 --~~D~~~~~~vlh~-~~d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                        .||+|++..++|+ ++.++..++|++++++|+|   ||.+++..+
T Consensus       127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~Lkp---GG~~i~~~~  170 (302)
T 2vdw_A          127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTAS---GGKVLITTM  170 (302)
T ss_dssp             SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred             CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCC---CCEEEEEeC
Confidence              5999999999987 4545567999999999999   899887765

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.32  E-value=6.7e-12  Score=98.96  Aligned_cols=95  Identities=14%  Similarity=0.168  Sum_probs=79.0

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCCCCC--CccEEeehhhhccCChH
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKAIS--PAYAVLLKWILLDWNDE  189 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~~--~~D~~~~~~vlh~~~d~  189 (259)
                      ....+|||+|||+|.++..++++.   +++++|+ +.+++.    ..+++++.+|+.++.+  .||+|+++..+|..++.
T Consensus        22 ~~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~----~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~~~~~~   94 (170)
T 3q87_B           22 LEMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES----HRGGNLVRADLLCSINQESVDVVVFNPPYVPDTDD   94 (170)
T ss_dssp             CCSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT----CSSSCEEECSTTTTBCGGGCSEEEECCCCBTTCCC
T ss_pred             CCCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc----ccCCeEEECChhhhcccCCCCEEEECCCCccCCcc
Confidence            445699999999999999999986   9999999 788877    5689999999998655  59999998888865443


Q ss_pred             -------HHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 041250          190 -------ECVKILKKCKEAITRDGKKRKVIIKDMIK  218 (259)
Q Consensus       190 -------~~~~il~~~~~~L~p~~~gg~lli~e~~~  218 (259)
                             +...+++++.+.+ |   ||++++.+...
T Consensus        95 ~~~~~~~~~~~~~~~~~~~l-p---gG~l~~~~~~~  126 (170)
T 3q87_B           95 PIIGGGYLGREVIDRFVDAV-T---VGMLYLLVIEA  126 (170)
T ss_dssp             TTTBCCGGGCHHHHHHHHHC-C---SSEEEEEEEGG
T ss_pred             ccccCCcchHHHHHHHHhhC-C---CCEEEEEEecC
Confidence                   3457889999988 8   89999988543

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.31  E-value=7.2e-12  Score=100.62  Aligned_cols=106  Identities=14%  Similarity=0.164  Sum_probs=84.1

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-C-CC--CccEEee
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-A-IS--PAYAVLL  179 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~-~~--~~D~~~~  179 (259)
                      .....+|||+|||+|.++..+++++ |..+++++|+ +.+++.+++      ..++++++.+|+.+ + ..  .||+|++
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~   99 (197)
T 3eey_A           20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMF   99 (197)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEE
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEE
Confidence            4556799999999999999999986 7789999999 888888876      14789999999876 2 32  5999998


Q ss_pred             hhhhc-------cCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecC
Q 041250          180 KWILL-------DWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKEN  220 (259)
Q Consensus       180 ~~vlh-------~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~  220 (259)
                      ...+.       ....+...++++++.+.|+|   ||++++..+....
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~---gG~l~~~~~~~~~  144 (197)
T 3eey_A          100 NLGYLPSGDHSISTRPETTIQALSKAMELLVT---GGIITVVIYYGGD  144 (197)
T ss_dssp             EESBCTTSCTTCBCCHHHHHHHHHHHHHHEEE---EEEEEEEECCBTT
T ss_pred             cCCcccCcccccccCcccHHHHHHHHHHhCcC---CCEEEEEEccCCC
Confidence            76541       11233456799999999999   9999988765443

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.31  E-value=3.8e-12  Score=104.01  Aligned_cols=106  Identities=14%  Similarity=0.131  Sum_probs=77.8

Q ss_pred             HHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhh----ccc-----CCCCeEEEeCCCCC-CC
Q 041250          103 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNG----LES-----DLVNLKYVGGDMFK-AI  171 (259)
Q Consensus       103 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~----a~~-----~~~ri~~~~~d~~~-~~  171 (259)
                      ..++.+.  .....+|||||||+|.++..+++.+|+.+++++|+ +.+++.    +++     ..++++++.+|+.+ +.
T Consensus        18 ~~~~~l~--~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~   95 (218)
T 3mq2_A           18 AEFEQLR--SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPP   95 (218)
T ss_dssp             HHHHHHH--TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCS
T ss_pred             HHHHHhh--ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCC
Confidence            3444445  56678999999999999999999999999999999 776654    222     34589999999988 55


Q ss_pred             C-CccEEeeh---hhhc--cCChHHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250          172 S-PAYAVLLK---WILL--DWNDEECVKILKKCKEAITRDGKKRKVIIKD  215 (259)
Q Consensus       172 ~-~~D~~~~~---~vlh--~~~d~~~~~il~~~~~~L~p~~~gg~lli~e  215 (259)
                      + +.|.+.+.   ..+|  +.++.  ..+|++++++|+|   ||++++.-
T Consensus        96 ~~~~d~v~~~~~~~~~~~~~~~~~--~~~l~~~~~~Lkp---gG~l~~~~  140 (218)
T 3mq2_A           96 LSGVGELHVLMPWGSLLRGVLGSS--PEMLRGMAAVCRP---GASFLVAL  140 (218)
T ss_dssp             CCCEEEEEEESCCHHHHHHHHTSS--SHHHHHHHHTEEE---EEEEEEEE
T ss_pred             CCCCCEEEEEccchhhhhhhhccH--HHHHHHHHHHcCC---CcEEEEEe
Confidence            4 22555422   2221  33332  5789999999999   89888843

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.31  E-value=1.5e-11  Score=99.90  Aligned_cols=99  Identities=13%  Similarity=0.144  Sum_probs=80.1

Q ss_pred             HHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----C-CCCeEEEeCCCCCC---CCC
Q 041250          104 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----D-LVNLKYVGGDMFKA---ISP  173 (259)
Q Consensus       104 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~-~~ri~~~~~d~~~~---~~~  173 (259)
                      ++..++  .....+|||+|||+|.++..+++.  ..+++++|+ +.+++.|++     . .++++++.+|+.+.   .+.
T Consensus        47 ~l~~l~--~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~  122 (204)
T 3njr_A           47 TLAALA--PRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPL  122 (204)
T ss_dssp             HHHHHC--CCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCC
T ss_pred             HHHhcC--CCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCC
Confidence            444555  566789999999999999999998  779999999 889988876     2 34899999999882   336


Q ss_pred             ccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          174 AYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       174 ~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      ||++++...+    +  .. +++++.+.|+|   ||++++...
T Consensus       123 ~D~v~~~~~~----~--~~-~l~~~~~~Lkp---gG~lv~~~~  155 (204)
T 3njr_A          123 PEAVFIGGGG----S--QA-LYDRLWEWLAP---GTRIVANAV  155 (204)
T ss_dssp             CSEEEECSCC----C--HH-HHHHHHHHSCT---TCEEEEEEC
T ss_pred             CCEEEECCcc----c--HH-HHHHHHHhcCC---CcEEEEEec
Confidence            9999987643    1  23 89999999999   899887665

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.31  E-value=3.8e-12  Score=106.48  Aligned_cols=104  Identities=12%  Similarity=0.145  Sum_probs=85.8

Q ss_pred             HHHHHhcccccCCCCeEEEecCCchHHHHHHHHH-CCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCCCC-
Q 041250          102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKA-FPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAIS-  172 (259)
Q Consensus       102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~-  172 (259)
                      ..++..++  .....+|||+|||+|.++..+++. .|..+++++|+ +.+++.|++      ..++++++.+|+.++++ 
T Consensus        83 ~~i~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  160 (255)
T 3mb5_A           83 ALIVAYAG--ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEE  160 (255)
T ss_dssp             HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCC
T ss_pred             HHHHHhhC--CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCC
Confidence            34555556  667789999999999999999999 88999999999 888888876      34679999999998655 


Q ss_pred             -CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250          173 -PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI  217 (259)
Q Consensus       173 -~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~  217 (259)
                       .||+|++     +.++.  ..+++++.++|+|   ||++++..+.
T Consensus       161 ~~~D~v~~-----~~~~~--~~~l~~~~~~L~~---gG~l~~~~~~  196 (255)
T 3mb5_A          161 ENVDHVIL-----DLPQP--ERVVEHAAKALKP---GGFFVAYTPC  196 (255)
T ss_dssp             CSEEEEEE-----CSSCG--GGGHHHHHHHEEE---EEEEEEEESS
T ss_pred             CCcCEEEE-----CCCCH--HHHHHHHHHHcCC---CCEEEEEECC
Confidence             4999987     34443  4689999999999   9999887653

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.31  E-value=8.5e-12  Score=101.99  Aligned_cols=98  Identities=20%  Similarity=0.288  Sum_probs=77.5

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-C--CC--CccEEeehhh
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-A--IS--PAYAVLLKWI  182 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~--~~--~~D~~~~~~v  182 (259)
                      ...+|||||||+|.++..+++.+|+.+++++|+ +.+++.|++     ..++++++.+|+.+ +  ++  .+|.|++...
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~  117 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS  117 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence            457899999999999999999999999999999 888888776     34689999999987 3  43  4898876533


Q ss_pred             hccCChH-------HHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250          183 LLDWNDE-------ECVKILKKCKEAITRDGKKRKVIIKD  215 (259)
Q Consensus       183 lh~~~d~-------~~~~il~~~~~~L~p~~~gg~lli~e  215 (259)
                      .. |+..       ....+++++++.|+|   ||.|++..
T Consensus       118 ~p-~~~~~~~~~rl~~~~~l~~~~~~Lkp---gG~l~~~t  153 (213)
T 2fca_A          118 DP-WPKKRHEKRRLTYSHFLKKYEEVMGK---GGSIHFKT  153 (213)
T ss_dssp             CC-CCSGGGGGGSTTSHHHHHHHHHHHTT---SCEEEEEE
T ss_pred             CC-CcCccccccccCcHHHHHHHHHHcCC---CCEEEEEe
Confidence            21 2211       024789999999999   89888764

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.31  E-value=1e-11  Score=111.47  Aligned_cols=110  Identities=16%  Similarity=0.239  Sum_probs=86.3

Q ss_pred             HHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhc-------cc-----C--CCCeEEEeCCCC
Q 041250          104 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGL-------ES-----D--LVNLKYVGGDMF  168 (259)
Q Consensus       104 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-------~~-----~--~~ri~~~~~d~~  168 (259)
                      +++.+.  .....+|||||||+|.++..+++.+|..+++++|+ +.+++.|       ++     .  ..+++++.+|.+
T Consensus       234 ml~~l~--l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~  311 (433)
T 1u2z_A          234 VYQQCQ--LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSF  311 (433)
T ss_dssp             HHHHTT--CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCS
T ss_pred             HHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCcc
Confidence            444444  56678999999999999999999988779999999 7777766       44     2  479999988554


Q ss_pred             -CC------CCCccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCC
Q 041250          169 -KA------ISPAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENR  221 (259)
Q Consensus       169 -~~------~~~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~  221 (259)
                       .+      ...||+|++.++++  . ++....|+++.+.|+|   ||+|++.+.+.+..
T Consensus       312 ~~~~~~~~~~~~FDvIvvn~~l~--~-~d~~~~L~el~r~LKp---GG~lVi~d~f~p~~  365 (433)
T 1u2z_A          312 VDNNRVAELIPQCDVILVNNFLF--D-EDLNKKVEKILQTAKV---GCKIISLKSLRSLT  365 (433)
T ss_dssp             TTCHHHHHHGGGCSEEEECCTTC--C-HHHHHHHHHHHTTCCT---TCEEEESSCSSCTT
T ss_pred             ccccccccccCCCCEEEEeCccc--c-ccHHHHHHHHHHhCCC---CeEEEEeeccCCcc
Confidence             32      23599999887773  2 3455788999999999   99999998877765

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.30  E-value=5e-12  Score=111.03  Aligned_cols=107  Identities=11%  Similarity=0.074  Sum_probs=87.0

Q ss_pred             HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhccc------CCCCeEEEeCCCCC-CCC-C
Q 041250          102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES------DLVNLKYVGGDMFK-AIS-P  173 (259)
Q Consensus       102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~d~~~-~~~-~  173 (259)
                      ..+.+.+.  ..+..+|||||||+|.++..+++. +..+++++|..++++.+++      ..++++++.+|+.+ +.+ +
T Consensus        40 ~~i~~~l~--~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~  116 (348)
T 2y1w_A           40 RAILQNHT--DFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQ  116 (348)
T ss_dssp             HHHHHTGG--GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSC
T ss_pred             HHHHhccc--cCCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCc
Confidence            44555555  456789999999999999998886 5669999999667777665      34799999999988 555 5


Q ss_pred             ccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEE
Q 041250          174 AYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIK  214 (259)
Q Consensus       174 ~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~  214 (259)
                      +|+|++..++|++..+.....+.++++.|+|   ||.+++.
T Consensus       117 ~D~Ivs~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~  154 (348)
T 2y1w_A          117 VDIIISEPMGYMLFNERMLESYLHAKKYLKP---SGNMFPT  154 (348)
T ss_dssp             EEEEEECCCBTTBTTTSHHHHHHHGGGGEEE---EEEEESC
T ss_pred             eeEEEEeCchhcCChHHHHHHHHHHHhhcCC---CeEEEEe
Confidence            9999999888888877777888999999999   8888744

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.30  E-value=6e-12  Score=105.74  Aligned_cols=98  Identities=16%  Similarity=0.149  Sum_probs=78.8

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCC-CCC--CccEEeehhhhccCCh
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK-AIS--PAYAVLLKWILLDWND  188 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~~--~~D~~~~~~vlh~~~d  188 (259)
                      ....+|||||||+|.++..+++.  +.+++++|+ +.+++.+++.... .++.+|+.+ +.+  .||+|++..+++++.+
T Consensus        53 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~-~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~  129 (260)
T 2avn_A           53 KNPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVK-NVVEAKAEDLPFPSGAFEAVLALGDVLSYVE  129 (260)
T ss_dssp             CSCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCS-CEEECCTTSCCSCTTCEEEEEECSSHHHHCS
T ss_pred             CCCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcCC-CEEECcHHHCCCCCCCEEEEEEcchhhhccc
Confidence            35679999999999999999987  568999999 8899888872222 288899987 554  4999999876655533


Q ss_pred             HHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250          189 EECVKILKKCKEAITRDGKKRKVIIKDMI  217 (259)
Q Consensus       189 ~~~~~il~~~~~~L~p~~~gg~lli~e~~  217 (259)
                      + ...+|++++++|+|   ||++++..+.
T Consensus       130 ~-~~~~l~~~~~~Lkp---gG~l~~~~~~  154 (260)
T 2avn_A          130 N-KDKAFSEIRRVLVP---DGLLIATVDN  154 (260)
T ss_dssp             C-HHHHHHHHHHHEEE---EEEEEEEEEB
T ss_pred             c-HHHHHHHHHHHcCC---CeEEEEEeCC
Confidence            3 67899999999999   8998887653

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.30  E-value=2.1e-12  Score=106.95  Aligned_cols=101  Identities=13%  Similarity=0.084  Sum_probs=80.7

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCC---CCC--CccEEee-hh
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK---AIS--PAYAVLL-KW  181 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~---~~~--~~D~~~~-~~  181 (259)
                      ....+|||||||+|.++..+++..+ .+++++|+ +.+++.|++    ...+++++.+|+.+   +++  .||+|++ .+
T Consensus        59 ~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~  137 (236)
T 1zx0_A           59 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY  137 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred             CCCCeEEEEeccCCHHHHHHHhcCC-CeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence            4567999999999999999966544 38999999 889888876    34789999999876   344  4999988 55


Q ss_pred             h--hccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250          182 I--LLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI  217 (259)
Q Consensus       182 v--lh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~  217 (259)
                      .  .+++.......++++++++|+|   ||++++++..
T Consensus       138 ~~~~~~~~~~~~~~~l~~~~r~Lkp---gG~l~~~~~~  172 (236)
T 1zx0_A          138 PLSEETWHTHQFNFIKNHAFRLLKP---GGVLTYCNLT  172 (236)
T ss_dssp             CCBGGGTTTHHHHHHHHTHHHHEEE---EEEEEECCHH
T ss_pred             ccchhhhhhhhHHHHHHHHHHhcCC---CeEEEEEecC
Confidence            4  4455555566889999999999   9999988764

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.30  E-value=9.3e-12  Score=105.63  Aligned_cols=104  Identities=19%  Similarity=0.156  Sum_probs=82.2

Q ss_pred             HHHHHhcccccCCCCeEEEecCCchHHHHHHHHH-CCCCeEEEeec-hHHHhhccc---C---CCCeEEEeCCCCCCCC-
Q 041250          102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKA-FPKLECTCFDL-PHVVNGLES---D---LVNLKYVGGDMFKAIS-  172 (259)
Q Consensus       102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~---~---~~ri~~~~~d~~~~~~-  172 (259)
                      ..++..++  ..+..+|||+|||+|.++..+++. +|..+++++|+ +.+++.+++   .   .++++++.+|+.++.+ 
T Consensus       100 ~~~~~~~~--~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~  177 (275)
T 1yb2_A          100 SYIIMRCG--LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISD  177 (275)
T ss_dssp             ------CC--CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCS
T ss_pred             HHHHHHcC--CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcC
Confidence            34555555  667789999999999999999998 78999999999 888888876   2   2689999999988655 


Q ss_pred             -CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250          173 -PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI  217 (259)
Q Consensus       173 -~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~  217 (259)
                       .||+|++     ++++.  .++|+++.+.|+|   ||++++....
T Consensus       178 ~~fD~Vi~-----~~~~~--~~~l~~~~~~Lkp---gG~l~i~~~~  213 (275)
T 1yb2_A          178 QMYDAVIA-----DIPDP--WNHVQKIASMMKP---GSVATFYLPN  213 (275)
T ss_dssp             CCEEEEEE-----CCSCG--GGSHHHHHHTEEE---EEEEEEEESS
T ss_pred             CCccEEEE-----cCcCH--HHHHHHHHHHcCC---CCEEEEEeCC
Confidence             4999997     34443  3789999999999   8999988753

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.30  E-value=5.6e-12  Score=101.97  Aligned_cols=99  Identities=12%  Similarity=0.165  Sum_probs=81.1

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCCCC-CccEEeehhhhc
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAIS-PAYAVLLKWILL  184 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~~-~~D~~~~~~vlh  184 (259)
                      .....+|||+|||+|.++..+++ .+..+++++|+ +.+++.+++     ...+++++.+|+.+..+ .||+|++...+|
T Consensus        58 ~~~~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~~~~~  136 (205)
T 3grz_A           58 MVKPLTVADVGTGSGILAIAAHK-LGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANILAE  136 (205)
T ss_dssp             CSSCCEEEEETCTTSHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEESCHH
T ss_pred             ccCCCEEEEECCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEECCcHH
Confidence            34567999999999999999776 56779999999 888888876     23349999999988444 699999987776


Q ss_pred             cCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250          185 DWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKE  219 (259)
Q Consensus       185 ~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~  219 (259)
                      +     ...+++++.+.|+|   ||++++.+....
T Consensus       137 ~-----~~~~l~~~~~~L~~---gG~l~~~~~~~~  163 (205)
T 3grz_A          137 I-----LLDLIPQLDSHLNE---DGQVIFSGIDYL  163 (205)
T ss_dssp             H-----HHHHGGGSGGGEEE---EEEEEEEEEEGG
T ss_pred             H-----HHHHHHHHHHhcCC---CCEEEEEecCcc
Confidence            4     46789999999999   899988776543

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.30  E-value=1.5e-11  Score=101.60  Aligned_cols=95  Identities=17%  Similarity=0.200  Sum_probs=77.8

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEeCCCCCC-----CC-CccEEeehh
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFKA-----IS-PAYAVLLKW  181 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~~-----~~-~~D~~~~~~  181 (259)
                      +.+..+|||+|||+|.++..+++.+|..+++++|+ +.+++.+++   ..+++.++.+|+.++     .+ .||+|+   
T Consensus        72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~---  148 (230)
T 1fbn_A           72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIY---  148 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEE---
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEE---
Confidence            55678999999999999999999988889999999 888877655   337899999999762     22 589988   


Q ss_pred             hhccCCh-HHHHHHHHHHHHhcccCCCCcEEEEE
Q 041250          182 ILLDWND-EECVKILKKCKEAITRDGKKRKVIIK  214 (259)
Q Consensus       182 vlh~~~d-~~~~~il~~~~~~L~p~~~gg~lli~  214 (259)
                        |+.++ +....+++++.+.|+|   ||++++.
T Consensus       149 --~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~  177 (230)
T 1fbn_A          149 --EDVAQPNQAEILIKNAKWFLKK---GGYGMIA  177 (230)
T ss_dssp             --ECCCSTTHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred             --EecCChhHHHHHHHHHHHhCCC---CcEEEEE
Confidence              55554 3446779999999999   8998887

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.30  E-value=9.9e-12  Score=111.48  Aligned_cols=139  Identities=10%  Similarity=0.044  Sum_probs=96.9

Q ss_pred             hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCC------CC--
Q 041250          101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK------AI--  171 (259)
Q Consensus       101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~------~~--  171 (259)
                      ...+++.+.  .....+|||||||+|.++..+++.  +.+++++|+ +.+++.+++.  .+......+..      +.  
T Consensus        96 ~~~l~~~~~--~~~~~~VLDiGcG~G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~~--~~~~~~~~~~~~~~~~l~~~~  169 (416)
T 4e2x_A           96 ARDFLATEL--TGPDPFIVEIGCNDGIMLRTIQEA--GVRHLGFEPSSGVAAKAREK--GIRVRTDFFEKATADDVRRTE  169 (416)
T ss_dssp             HHHHHHTTT--CSSSCEEEEETCTTTTTHHHHHHT--TCEEEEECCCHHHHHHHHTT--TCCEECSCCSHHHHHHHHHHH
T ss_pred             HHHHHHHhC--CCCCCEEEEecCCCCHHHHHHHHc--CCcEEEECCCHHHHHHHHHc--CCCcceeeechhhHhhcccCC
Confidence            355666666  666789999999999999999987  458999999 8888888853  23333222221      12  


Q ss_pred             CCccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccCHHH
Q 041250          172 SPAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKE  251 (259)
Q Consensus       172 ~~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~e  251 (259)
                      ..||+|++.+++|++++  ...+|++++++|+|   ||++++..+.....      .. ...++.  ....+...++.++
T Consensus       170 ~~fD~I~~~~vl~h~~d--~~~~l~~~~r~Lkp---gG~l~i~~~~~~~~------~~-~~~~~~--~~~~~~~~~s~~~  235 (416)
T 4e2x_A          170 GPANVIYAANTLCHIPY--VQSVLEGVDALLAP---DGVFVFEDPYLGDI------VA-KTSFDQ--IFDEHFFLFSATS  235 (416)
T ss_dssp             CCEEEEEEESCGGGCTT--HHHHHHHHHHHEEE---EEEEEEEEECHHHH------HH-HTCGGG--CSTTCCEECCHHH
T ss_pred             CCEEEEEECChHHhcCC--HHHHHHHHHHHcCC---CeEEEEEeCChHHh------hh-hcchhh--hhhhhhhcCCHHH
Confidence            25999999999999986  46899999999999   89888865432110      00 001111  1123445688999


Q ss_pred             HHHHHhcC
Q 041250          252 WAKIFADS  259 (259)
Q Consensus       252 ~~~ll~~a  259 (259)
                      |+++++++
T Consensus       236 l~~ll~~a  243 (416)
T 4e2x_A          236 VQGMAQRC  243 (416)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHc
Confidence            99998764

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.29  E-value=4.2e-12  Score=104.33  Aligned_cols=98  Identities=18%  Similarity=0.211  Sum_probs=77.6

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCC----CC--CccEEeehh
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKA----IS--PAYAVLLKW  181 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~----~~--~~D~~~~~~  181 (259)
                      ...+|||||||+|.++..+++.+|+.+++++|+ +.+++.|++     ...+++++.+|..+.    ++  .+|.|++..
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~  113 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF  113 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence            467899999999999999999999999999999 888887765     356899999998762    44  489888764


Q ss_pred             hhccCChHHH-------HHHHHHHHHhcccCCCCcEEEEEe
Q 041250          182 ILLDWNDEEC-------VKILKKCKEAITRDGKKRKVIIKD  215 (259)
Q Consensus       182 vlh~~~d~~~-------~~il~~~~~~L~p~~~gg~lli~e  215 (259)
                      ... |+....       ..++++++++|+|   ||.+++..
T Consensus       114 ~~p-~~~~~~~~rr~~~~~~l~~~~r~Lkp---GG~l~i~t  150 (218)
T 3dxy_A          114 PDP-WHKARHNKRRIVQVPFAELVKSKLQL---GGVFHMAT  150 (218)
T ss_dssp             CCC-CCSGGGGGGSSCSHHHHHHHHHHEEE---EEEEEEEE
T ss_pred             CCC-ccchhhhhhhhhhHHHHHHHHHHcCC---CcEEEEEe
Confidence            332 332211       2489999999999   89887765

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.29  E-value=7.7e-13  Score=107.21  Aligned_cols=101  Identities=18%  Similarity=0.171  Sum_probs=67.0

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccC----CCCeEEEeCCCCCC--C-----CCccEEeeh
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESD----LVNLKYVGGDMFKA--I-----SPAYAVLLK  180 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~ri~~~~~d~~~~--~-----~~~D~~~~~  180 (259)
                      .+..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++.    ..+++++.+|+.++  .     ..||+|++.
T Consensus        29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~n  108 (215)
T 4dzr_A           29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAERGRPWHAIVSN  108 (215)
T ss_dssp             CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHHHHHHHHHTTCCBSEEEEC
T ss_pred             CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhccCcccEEEEC
Confidence            5678999999999999999999999999999999 8899888872    12789999999873  2     359999995


Q ss_pred             hhh------ccCChHHH------------------HHHHHHHHHhcccCCCCcEEEEEee
Q 041250          181 WIL------LDWNDEEC------------------VKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       181 ~vl------h~~~d~~~------------------~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      ..+      +.++++..                  .++++++++.|+|   ||++++++.
T Consensus       109 pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~  165 (215)
T 4dzr_A          109 PPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLAR---GRAGVFLEV  165 (215)
T ss_dssp             CCCCC------------------------CTTHHHHHHHTCCGGGBCS---SSEEEEEEC
T ss_pred             CCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcC---CCeEEEEEE
Confidence            433      33333222                  6789999999999   999666665

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.29  E-value=1.8e-11  Score=103.92  Aligned_cols=98  Identities=20%  Similarity=0.272  Sum_probs=80.5

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCCCC--CccEEeehh----
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAIS--PAYAVLLKW----  181 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~~--~~D~~~~~~----  181 (259)
                      +..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++     ..++++++.+|++++.+  .||+|+++.    
T Consensus       109 ~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~fD~Iv~npPy~~  188 (276)
T 2b3t_A          109 QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPYID  188 (276)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCCBC
T ss_pred             CCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccCCccEEEECCCCCC
Confidence            457999999999999999999999999999999 888888876     33589999999998543  599999873    


Q ss_pred             ---------hhccCCh----------HHHHHHHHHHHHhcccCCCCcEEEEE
Q 041250          182 ---------ILLDWND----------EECVKILKKCKEAITRDGKKRKVIIK  214 (259)
Q Consensus       182 ---------vlh~~~d----------~~~~~il~~~~~~L~p~~~gg~lli~  214 (259)
                               ++++.|.          +...++++++.+.|+|   ||.+++.
T Consensus       189 ~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~Lkp---gG~l~~~  237 (276)
T 2b3t_A          189 EQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVS---GGFLLLE  237 (276)
T ss_dssp             TTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEE---EEEEEEE
T ss_pred             ccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCC---CCEEEEE
Confidence                     4443332          3457899999999999   8887765

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.29  E-value=5.6e-12  Score=104.03  Aligned_cols=101  Identities=14%  Similarity=0.069  Sum_probs=73.5

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec--hHHHhhc---cc-----CCCCeEEEeCCCCC-CCCCccEEeehh
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL--PHVVNGL---ES-----DLVNLKYVGGDMFK-AISPAYAVLLKW  181 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a---~~-----~~~ri~~~~~d~~~-~~~~~D~~~~~~  181 (259)
                      ....+|||||||+|.++..+++++|+.+++++|+  +.+++.|   ++     ...+++|+.+|..+ +...+|.+....
T Consensus        23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~  102 (225)
T 3p2e_A           23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSIS  102 (225)
T ss_dssp             TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEE
T ss_pred             CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEE
Confidence            4567899999999999999999999999999999  3454444   44     34689999999976 322235554444


Q ss_pred             hhccCChHH------HHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          182 ILLDWNDEE------CVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       182 vlh~~~d~~------~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      +.+.|+...      ...+|++++++|+|   ||+++++..
T Consensus       103 ~~~~~~~~~~~~~~~~~~~l~~~~r~Lkp---GG~l~i~~~  140 (225)
T 3p2e_A          103 ILFPWGTLLEYVIKPNRDILSNVADLAKK---EAHFEFVTT  140 (225)
T ss_dssp             EESCCHHHHHHHHTTCHHHHHHHHTTEEE---EEEEEEEEC
T ss_pred             EeCCCcHHhhhhhcchHHHHHHHHHhcCC---CcEEEEEEe
Confidence            443343311      13589999999999   999988443

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.29  E-value=1.7e-11  Score=100.04  Aligned_cols=96  Identities=14%  Similarity=0.103  Sum_probs=74.4

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHH----hhcccCCCCeEEEeCCCCCC-----CC-CccEEeeh
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVV----NGLESDLVNLKYVGGDMFKA-----IS-PAYAVLLK  180 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~----~~a~~~~~ri~~~~~d~~~~-----~~-~~D~~~~~  180 (259)
                      +.+..+|||||||+|.++..+++..|+.+++++|+ +.++    +.++ ...++.++.+|...+     .+ .||+|++.
T Consensus        55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~-~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~  133 (210)
T 1nt2_A           55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVR-ERNNIIPLLFDASKPWKYSGIVEKVDLIYQD  133 (210)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHH-HCSSEEEECSCTTCGGGTTTTCCCEEEEEEC
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHh-cCCCeEEEEcCCCCchhhcccccceeEEEEe
Confidence            45667999999999999999999988779999999 6544    3344 346899999998763     22 59999876


Q ss_pred             hhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250          181 WILLDWNDEECVKILKKCKEAITRDGKKRKVIIKD  215 (259)
Q Consensus       181 ~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e  215 (259)
                       +.+   .++...+++++++.|+|   ||++++.-
T Consensus       134 -~~~---~~~~~~~l~~~~r~Lkp---gG~l~i~~  161 (210)
T 1nt2_A          134 -IAQ---KNQIEILKANAEFFLKE---KGEVVIMV  161 (210)
T ss_dssp             -CCS---TTHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred             -ccC---hhHHHHHHHHHHHHhCC---CCEEEEEE
Confidence             222   23445669999999999   99998884

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.28  E-value=2.1e-11  Score=98.84  Aligned_cols=99  Identities=12%  Similarity=0.139  Sum_probs=81.6

Q ss_pred             HHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCCCC---C
Q 041250          103 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAIS---P  173 (259)
Q Consensus       103 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~~---~  173 (259)
                      .+++.++  ..+..+|||||||+|.++..+++.  ..+++++|+ +.+++.+++     ...+++++.+|..+..+   .
T Consensus        68 ~~~~~l~--~~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~  143 (210)
T 3lbf_A           68 RMTELLE--LTPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAP  143 (210)
T ss_dssp             HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred             HHHHhcC--CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCC
Confidence            3444555  566789999999999999999998  678999999 888888876     34689999999988332   5


Q ss_pred             ccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          174 AYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       174 ~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      ||+|++..++|++++        ++.+.|+|   ||++++.-.
T Consensus       144 ~D~i~~~~~~~~~~~--------~~~~~L~p---gG~lv~~~~  175 (210)
T 3lbf_A          144 FDAIIVTAAPPEIPT--------ALMTQLDE---GGILVLPVG  175 (210)
T ss_dssp             EEEEEESSBCSSCCT--------HHHHTEEE---EEEEEEEEC
T ss_pred             ccEEEEccchhhhhH--------HHHHhccc---CcEEEEEEc
Confidence            999999999998886        47889999   898888654

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.27  E-value=9.3e-12  Score=104.02  Aligned_cols=100  Identities=16%  Similarity=0.168  Sum_probs=81.6

Q ss_pred             CCCeEEEecCCchHHHHHHHHH--CCCCeEEEeec-hHHHhhccc---CC------CC----------------------
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKA--FPKLECTCFDL-PHVVNGLES---DL------VN----------------------  159 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~---~~------~r----------------------  159 (259)
                      ...+|||+|||+|.++..+++.  +|..+++++|+ +.+++.|++   ..      .+                      
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA  130 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence            4579999999999999999998  78889999999 899988885   22      12                      


Q ss_pred             ---eE-------------EEeCCCCCCC------C--CccEEeehhhhccCCh-------HHHHHHHHHHHHhcccCCCC
Q 041250          160 ---LK-------------YVGGDMFKAI------S--PAYAVLLKWILLDWND-------EECVKILKKCKEAITRDGKK  208 (259)
Q Consensus       160 ---i~-------------~~~~d~~~~~------~--~~D~~~~~~vlh~~~d-------~~~~~il~~~~~~L~p~~~g  208 (259)
                         ++             |+.+|++++.      +  .||+|+++..++...+       +....+++++++.|+|   |
T Consensus       131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---g  207 (250)
T 1o9g_A          131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPA---H  207 (250)
T ss_dssp             HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCT---T
T ss_pred             hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCC---C
Confidence               77             9999999843      3  5999999876655432       5667899999999999   9


Q ss_pred             cEEEEEee
Q 041250          209 RKVIIKDM  216 (259)
Q Consensus       209 g~lli~e~  216 (259)
                      |+++++..
T Consensus       208 G~l~~~~~  215 (250)
T 1o9g_A          208 AVIAVTDR  215 (250)
T ss_dssp             CEEEEEES
T ss_pred             cEEEEeCc
Confidence            99988544

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.27  E-value=1e-11  Score=100.43  Aligned_cols=92  Identities=18%  Similarity=0.205  Sum_probs=76.6

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCCCC--CccEEeehhhhccC
Q 041250          115 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAIS--PAYAVLLKWILLDW  186 (259)
Q Consensus       115 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~~--~~D~~~~~~vlh~~  186 (259)
                      ..+|||+|||+|.++..+++.+|+.+++++|. +.+++.+++     ...+++++.+|+.+..+  .||+|++..+ +  
T Consensus        66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~-~--  142 (207)
T 1jsx_A           66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAF-A--  142 (207)
T ss_dssp             SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCS-S--
T ss_pred             CCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEecc-C--
Confidence            57999999999999999999999999999999 888888776     33469999999988433  5999987542 2  


Q ss_pred             ChHHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250          187 NDEECVKILKKCKEAITRDGKKRKVIIKD  215 (259)
Q Consensus       187 ~d~~~~~il~~~~~~L~p~~~gg~lli~e  215 (259)
                       +  ...+++++.+.|+|   ||.+++..
T Consensus       143 -~--~~~~l~~~~~~L~~---gG~l~~~~  165 (207)
T 1jsx_A          143 -S--LNDMVSWCHHLPGE---QGRFYALK  165 (207)
T ss_dssp             -S--HHHHHHHHTTSEEE---EEEEEEEE
T ss_pred             -C--HHHHHHHHHHhcCC---CcEEEEEe
Confidence             2  35899999999999   89888764

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.27  E-value=3.9e-11  Score=95.88  Aligned_cols=100  Identities=11%  Similarity=0.020  Sum_probs=80.7

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-C--C--CCccEEeehh
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-A--I--SPAYAVLLKW  181 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~--~--~~~D~~~~~~  181 (259)
                      ....+|||+|||+|.++..+++. +..+++++|+ +.+++.+++     ..++++++.+|+.+ .  .  ..||+|++..
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~  121 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADP  121 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECC
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECC
Confidence            34679999999999999988774 5568999999 899988886     33789999999987 2  2  2599999987


Q ss_pred             hhccCChHHHHHHHHHHHH--hcccCCCCcEEEEEeee
Q 041250          182 ILLDWNDEECVKILKKCKE--AITRDGKKRKVIIKDMI  217 (259)
Q Consensus       182 vlh~~~d~~~~~il~~~~~--~L~p~~~gg~lli~e~~  217 (259)
                      .+|. ..++..++++++.+  .|+|   ||.+++....
T Consensus       122 p~~~-~~~~~~~~l~~~~~~~~L~p---gG~l~~~~~~  155 (189)
T 3p9n_A          122 PYNV-DSADVDAILAALGTNGWTRE---GTVAVVERAT  155 (189)
T ss_dssp             CTTS-CHHHHHHHHHHHHHSSSCCT---TCEEEEEEET
T ss_pred             CCCc-chhhHHHHHHHHHhcCccCC---CeEEEEEecC
Confidence            7664 34556789999999  9999   8988876554

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.26  E-value=2.5e-11  Score=98.76  Aligned_cols=100  Identities=13%  Similarity=0.097  Sum_probs=82.1

Q ss_pred             HHHhcccccCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCCCC---C
Q 041250          104 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAIS---P  173 (259)
Q Consensus       104 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~~---~  173 (259)
                      +++.+.  .....+|||||||+|.++..+++.. |+.+++++|. +.+++.+++     ..++++++.+|+..+.+   .
T Consensus        69 ~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~  146 (215)
T 2yxe_A           69 MCELLD--LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAP  146 (215)
T ss_dssp             HHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCC
T ss_pred             HHHhhC--CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCCC
Confidence            444444  5567899999999999999999987 7789999999 888888876     34679999999976443   5


Q ss_pred             ccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          174 AYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       174 ~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      ||+|++..++|++++        ++.+.|+|   ||++++...
T Consensus       147 fD~v~~~~~~~~~~~--------~~~~~L~p---gG~lv~~~~  178 (215)
T 2yxe_A          147 YDRIYTTAAGPKIPE--------PLIRQLKD---GGKLLMPVG  178 (215)
T ss_dssp             EEEEEESSBBSSCCH--------HHHHTEEE---EEEEEEEES
T ss_pred             eeEEEECCchHHHHH--------HHHHHcCC---CcEEEEEEC
Confidence            999999999998873        67889999   898888754

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.26  E-value=9.4e-12  Score=102.97  Aligned_cols=100  Identities=8%  Similarity=0.197  Sum_probs=81.1

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCCC-----CCccEEee
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAI-----SPAYAVLL  179 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~-----~~~D~~~~  179 (259)
                      ..+..+|||||||+|..+..+++.+|+.+++++|+ +.+++.|++      ..++++++.+|+.+..     ..||+|++
T Consensus        69 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~  148 (232)
T 3ntv_A           69 MNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFI  148 (232)
T ss_dssp             HHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEE
T ss_pred             hcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEE
Confidence            45678999999999999999999889999999999 888988876      3469999999998732     25999986


Q ss_pred             hhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250          180 KWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKE  219 (259)
Q Consensus       180 ~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~  219 (259)
                      ...     .+....+++++.+.|+|   ||.|++.+...+
T Consensus       149 ~~~-----~~~~~~~l~~~~~~Lkp---gG~lv~d~~~~~  180 (232)
T 3ntv_A          149 DAA-----KAQSKKFFEIYTPLLKH---QGLVITDNVLYH  180 (232)
T ss_dssp             ETT-----SSSHHHHHHHHGGGEEE---EEEEEEECTTGG
T ss_pred             cCc-----HHHHHHHHHHHHHhcCC---CeEEEEeeCCcC
Confidence            532     23356799999999999   888877555443

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.26  E-value=1e-11  Score=103.81  Aligned_cols=100  Identities=8%  Similarity=0.128  Sum_probs=81.6

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC--C-CC---CccEE
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK--A-IS---PAYAV  177 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~--~-~~---~~D~~  177 (259)
                      ..+..+|||||||+|..+..+++.+| +.+++++|+ +.+++.|++      ..++|+++.+|..+  + .+   .||+|
T Consensus        61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V  140 (248)
T 3tfw_A           61 LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLI  140 (248)
T ss_dssp             HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEE
T ss_pred             hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEE
Confidence            45678999999999999999999998 889999999 888888876      34689999999876  2 21   59999


Q ss_pred             eehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250          178 LLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKE  219 (259)
Q Consensus       178 ~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~  219 (259)
                      ++..     +......+++++.+.|+|   ||.|++.+....
T Consensus       141 ~~d~-----~~~~~~~~l~~~~~~Lkp---GG~lv~~~~~~~  174 (248)
T 3tfw_A          141 FIDA-----DKPNNPHYLRWALRYSRP---GTLIIGDNVVRD  174 (248)
T ss_dssp             EECS-----CGGGHHHHHHHHHHTCCT---TCEEEEECCSGG
T ss_pred             EECC-----chHHHHHHHHHHHHhcCC---CeEEEEeCCCcC
Confidence            8854     334456799999999999   898877776554

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.25  E-value=2.2e-11  Score=101.14  Aligned_cols=95  Identities=16%  Similarity=0.127  Sum_probs=78.7

Q ss_pred             CCCeEEEecCCchHHHHHHHHH----CCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCCC--C---C--CccEEeehh
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKA----FPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKA--I---S--PAYAVLLKW  181 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~--~---~--~~D~~~~~~  181 (259)
                      +..+|||||||+|..+..+++.    +|+.+++++|+ +.+++.|+...++|+++.+|..+.  +   .  .||+|++..
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~  160 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN  160 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECC
Confidence            3579999999999999999998    78999999999 888888875568999999999873  2   2  499988765


Q ss_pred             hhccCChHHHHHHHHHHHH-hcccCCCCcEEEEEee
Q 041250          182 ILLDWNDEECVKILKKCKE-AITRDGKKRKVIIKDM  216 (259)
Q Consensus       182 vlh~~~d~~~~~il~~~~~-~L~p~~~gg~lli~e~  216 (259)
                      . |.    +...+|+++.+ .|+|   ||++++.+.
T Consensus       161 ~-~~----~~~~~l~~~~r~~Lkp---GG~lv~~d~  188 (236)
T 2bm8_A          161 A-HA----NTFNIMKWAVDHLLEE---GDYFIIEDM  188 (236)
T ss_dssp             S-CS----SHHHHHHHHHHHTCCT---TCEEEECSC
T ss_pred             c-hH----hHHHHHHHHHHhhCCC---CCEEEEEeC
Confidence            4 42    34578999997 9999   999888765

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.24  E-value=2.9e-12  Score=107.41  Aligned_cols=100  Identities=15%  Similarity=0.070  Sum_probs=80.8

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc--CCC-------------------------------
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES--DLV-------------------------------  158 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~-------------------------------  158 (259)
                      .+..+|||||||+|.++..+++..+ .+++++|+ +.+++.+++  ...                               
T Consensus        55 ~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  133 (265)
T 2i62_A           55 VKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR  133 (265)
T ss_dssp             CCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred             cCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence            3457899999999999999988765 58999999 888888866  111                               


Q ss_pred             -Ce-EEEeCCCCCC-C------CCccEEeehhhhccCCh--HHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          159 -NL-KYVGGDMFKA-I------SPAYAVLLKWILLDWND--EECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       159 -ri-~~~~~d~~~~-~------~~~D~~~~~~vlh~~~d--~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                       ++ +++.+|+.+. .      ..||+|++..++|+.++  ++...+|++++++|+|   ||++++.+.
T Consensus       134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~~  199 (265)
T 2i62_A          134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKP---GGFLVMVDA  199 (265)
T ss_dssp             HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEEEE
T ss_pred             hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCC---CcEEEEEec
Confidence             28 9999999872 1      24999999999995433  3567899999999999   999998884

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.24  E-value=2.5e-11  Score=102.25  Aligned_cols=101  Identities=13%  Similarity=0.158  Sum_probs=78.8

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---C------CCCeEEEeCCCCCC--------CC-
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---D------LVNLKYVGGDMFKA--------IS-  172 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~------~~ri~~~~~d~~~~--------~~-  172 (259)
                      .....+|||+|||+|.++..+++++|+.+++++|+ +.+++.|++   .      .+|++++.+|+.+.        ++ 
T Consensus        34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  113 (260)
T 2ozv_A           34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPD  113 (260)
T ss_dssp             CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred             ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCC
Confidence            44567999999999999999999999999999999 888888876   1      13699999999874        22 


Q ss_pred             -CccEEeehhhhcc----------------CChHHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250          173 -PAYAVLLKWILLD----------------WNDEECVKILKKCKEAITRDGKKRKVIIKD  215 (259)
Q Consensus       173 -~~D~~~~~~vlh~----------------~~d~~~~~il~~~~~~L~p~~~gg~lli~e  215 (259)
                       .||+|++...++.                ........+++.+.+.|+|   ||+++++-
T Consensus       114 ~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~  170 (260)
T 2ozv_A          114 EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVS---GGQLSLIS  170 (260)
T ss_dssp             TCEEEEEECCCC---------------------CCHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred             CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCC---CCEEEEEE
Confidence             5999999733322                1222256789999999999   89987753

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.24  E-value=9.1e-12  Score=103.51  Aligned_cols=94  Identities=19%  Similarity=0.264  Sum_probs=78.5

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-CC-----CCccEEeeh
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AI-----SPAYAVLLK  180 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~~-----~~~D~~~~~  180 (259)
                      .+..+|||||||+|.++..+++..|+.+++++|+ +.+++.+++     ...+++++.+|+.+ +.     ..||+|++.
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~  148 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR  148 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence            4568999999999999999999999999999999 888888776     34579999999876 42     259999987


Q ss_pred             hhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250          181 WILLDWNDEECVKILKKCKEAITRDGKKRKVIIKD  215 (259)
Q Consensus       181 ~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e  215 (259)
                      .+    .+  ...+++.+.+.|+|   ||++++..
T Consensus       149 ~~----~~--~~~~l~~~~~~Lkp---gG~l~~~~  174 (240)
T 1xdz_A          149 AV----AR--LSVLSELCLPLVKK---NGLFVALK  174 (240)
T ss_dssp             CC----SC--HHHHHHHHGGGEEE---EEEEEEEE
T ss_pred             cc----CC--HHHHHHHHHHhcCC---CCEEEEEe
Confidence            63    22  45899999999999   89988864

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.24  E-value=2.5e-11  Score=99.82  Aligned_cols=96  Identities=8%  Similarity=0.041  Sum_probs=80.1

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCCCC---CccEEeehh
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAIS---PAYAVLLKW  181 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~---~~D~~~~~~  181 (259)
                      .++..+|+|||||+|.+++.+++..|..+++++|+ |.+++.|++      ..++|++..+|.+++++   .||+|++..
T Consensus        13 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG   92 (225)
T 3kr9_A           13 VSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAG   92 (225)
T ss_dssp             SCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcC
Confidence            34567999999999999999999999999999999 888888886      45689999999998655   499998765


Q ss_pred             hhccCChHHHHHHHHHHHHhcccCCCCcEEEEE
Q 041250          182 ILLDWNDEECVKILKKCKEAITRDGKKRKVIIK  214 (259)
Q Consensus       182 vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~  214 (259)
                      +    ..+....||....+.|+|   +|++++.
T Consensus        93 ~----Gg~~i~~Il~~~~~~L~~---~~~lVlq  118 (225)
T 3kr9_A           93 M----GGRLIARILEEGLGKLAN---VERLILQ  118 (225)
T ss_dssp             E----CHHHHHHHHHHTGGGCTT---CCEEEEE
T ss_pred             C----ChHHHHHHHHHHHHHhCC---CCEEEEE
Confidence            3    334467899999999998   7876663

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.24  E-value=1.7e-11  Score=107.71  Aligned_cols=97  Identities=12%  Similarity=0.126  Sum_probs=78.2

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhccc------CCCCeEEEeCCCCC-CCC--CccEEeehhh
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES------DLVNLKYVGGDMFK-AIS--PAYAVLLKWI  182 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~d~~~-~~~--~~D~~~~~~v  182 (259)
                      ..+..+|||||||+|.++..++++ +..+++++|++++++.|++      ..++++++.+|+.+ +.|  .||+|++..+
T Consensus        64 ~~~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~  142 (349)
T 3q7e_A           64 LFKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWM  142 (349)
T ss_dssp             HHTTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCC
T ss_pred             cCCCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEccc
Confidence            345689999999999999999988 6669999999778887776      45679999999998 665  5999998765


Q ss_pred             hccC-ChHHHHHHHHHHHHhcccCCCCcEEE
Q 041250          183 LLDW-NDEECVKILKKCKEAITRDGKKRKVI  212 (259)
Q Consensus       183 lh~~-~d~~~~~il~~~~~~L~p~~~gg~ll  212 (259)
                      .|.+ ..+....+++++.+.|+|   ||.++
T Consensus       143 ~~~l~~~~~~~~~l~~~~r~Lkp---gG~li  170 (349)
T 3q7e_A          143 GYCLFYESMLNTVLHARDKWLAP---DGLIF  170 (349)
T ss_dssp             BBTBTBTCCHHHHHHHHHHHEEE---EEEEE
T ss_pred             cccccCchhHHHHHHHHHHhCCC---CCEEc
Confidence            5443 223355789999999999   88876

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.24  E-value=1.9e-11  Score=100.11  Aligned_cols=100  Identities=10%  Similarity=0.114  Sum_probs=81.3

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCC---C-----CCcc
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKA---I-----SPAY  175 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~---~-----~~~D  175 (259)
                      ..+..+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++      ..++++++.+|..+.   .     ..||
T Consensus        56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD  135 (223)
T 3duw_A           56 IQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFD  135 (223)
T ss_dssp             HHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCS
T ss_pred             hhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcC
Confidence            45678999999999999999999998 789999999 888888776      346899999999762   1     3499


Q ss_pred             EEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250          176 AVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKE  219 (259)
Q Consensus       176 ~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~  219 (259)
                      +|++...     ......+++++.+.|+|   ||.+++.+...+
T Consensus       136 ~v~~d~~-----~~~~~~~l~~~~~~L~p---gG~lv~~~~~~~  171 (223)
T 3duw_A          136 FIFIDAD-----KQNNPAYFEWALKLSRP---GTVIIGDNVVRE  171 (223)
T ss_dssp             EEEECSC-----GGGHHHHHHHHHHTCCT---TCEEEEESCSGG
T ss_pred             EEEEcCC-----cHHHHHHHHHHHHhcCC---CcEEEEeCCCcC
Confidence            9987644     23346899999999999   898777766554

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.23  E-value=4.1e-11  Score=102.28  Aligned_cols=95  Identities=16%  Similarity=0.189  Sum_probs=75.9

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCCCC-Cc---cEEeeh--
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAIS-PA---YAVLLK--  180 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~-~~---D~~~~~--  180 (259)
                      ...+|||+|||+|.++..+++. |+.+++++|+ +.+++.|++      ...|++|+.+|++++.+ .|   |+|+++  
T Consensus       123 ~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~~f~~~D~IvsnPP  201 (284)
T 1nv8_A          123 GIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPP  201 (284)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCC
T ss_pred             CCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcccccCCCCEEEEcCC
Confidence            4569999999999999999999 9999999999 899988876      33579999999998554 58   999986  


Q ss_pred             ----------hhhccCChH------HHHHHHHHHH-HhcccCCCCcEEEE
Q 041250          181 ----------WILLDWNDE------ECVKILKKCK-EAITRDGKKRKVII  213 (259)
Q Consensus       181 ----------~vlh~~~d~------~~~~il~~~~-~~L~p~~~gg~lli  213 (259)
                                .+. +.+..      +...+++++. +.++|   ||.+++
T Consensus       202 yi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~p---gG~l~~  247 (284)
T 1nv8_A          202 YVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTS---GKIVLM  247 (284)
T ss_dssp             CBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCT---TCEEEE
T ss_pred             CCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCC---CCEEEE
Confidence                      222 22221      1237899999 99999   888775

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.23  E-value=1.3e-11  Score=103.34  Aligned_cols=95  Identities=15%  Similarity=0.097  Sum_probs=79.1

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-CC-----CCccEEeeh
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AI-----SPAYAVLLK  180 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~~-----~~~D~~~~~  180 (259)
                      ....+|||||||+|..+..++..+|+.+++++|. +.+++.+++     ...+|+++.+|+.+ +.     ..||+|+++
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~  158 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR  158 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence            4567999999999999999999999999999998 888888876     34579999999876 32     259999987


Q ss_pred             hhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          181 WILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       181 ~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      .+-    +  ...+++.+.+.|+|   ||++++...
T Consensus       159 a~~----~--~~~ll~~~~~~Lkp---gG~l~~~~g  185 (249)
T 3g89_A          159 AVA----P--LCVLSELLLPFLEV---GGAAVAMKG  185 (249)
T ss_dssp             SSC----C--HHHHHHHHGGGEEE---EEEEEEEEC
T ss_pred             CcC----C--HHHHHHHHHHHcCC---CeEEEEEeC
Confidence            542    2  34789999999999   999888764

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.23  E-value=2.9e-11  Score=95.32  Aligned_cols=100  Identities=17%  Similarity=0.225  Sum_probs=80.6

Q ss_pred             HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCCCC--C
Q 041250          102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAIS--P  173 (259)
Q Consensus       102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~~--~  173 (259)
                      ..+++.++  ..+..+|||+|||+|.++..+++  +..+++++|+ +.+++.+++     ..++++++.+|+.++.+  .
T Consensus        25 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~  100 (183)
T 2yxd_A           25 AVSIGKLN--LNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKLE  100 (183)
T ss_dssp             HHHHHHHC--CCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGGCC
T ss_pred             HHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccCCC
Confidence            34445555  55678999999999999999998  7889999999 888888876     23689999999987544  5


Q ss_pred             ccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          174 AYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       174 ~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      ||+|++..+      .....+++++++.  |   ||.+++...
T Consensus       101 ~D~i~~~~~------~~~~~~l~~~~~~--~---gG~l~~~~~  132 (183)
T 2yxd_A          101 FNKAFIGGT------KNIEKIIEILDKK--K---INHIVANTI  132 (183)
T ss_dssp             CSEEEECSC------SCHHHHHHHHHHT--T---CCEEEEEES
T ss_pred             CcEEEECCc------ccHHHHHHHHhhC--C---CCEEEEEec
Confidence            999999887      2245789999888  7   899988874

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.23  E-value=2.2e-11  Score=105.04  Aligned_cols=99  Identities=13%  Similarity=0.180  Sum_probs=79.7

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC---CCC--CccEEeehhhh
Q 041250          115 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK---AIS--PAYAVLLKWIL  183 (259)
Q Consensus       115 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~---~~~--~~D~~~~~~vl  183 (259)
                      ..+|||||||+|.++..+++.+|+.+++++|+ +.+++.|++     ..+|++++.+|..+   ..+  .||+|++....
T Consensus        90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~  169 (317)
T 3gjy_A           90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFA  169 (317)
T ss_dssp             GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred             CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence            34999999999999999999999999999999 999999987     24799999999876   233  59999986544


Q ss_pred             ccCChHH--HHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          184 LDWNDEE--CVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       184 h~~~d~~--~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      +......  ...++++++++|+|   ||.+++.-.
T Consensus       170 ~~~~~~~L~t~efl~~~~r~Lkp---gGvlv~~~~  201 (317)
T 3gjy_A          170 GAITPQNFTTVEFFEHCHRGLAP---GGLYVANCG  201 (317)
T ss_dssp             TSCCCGGGSBHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred             ccccchhhhHHHHHHHHHHhcCC---CcEEEEEec
Confidence            4332221  15799999999999   887766554

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.23  E-value=3.5e-11  Score=99.55  Aligned_cols=100  Identities=18%  Similarity=0.222  Sum_probs=81.0

Q ss_pred             HHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCCCC---C
Q 041250          103 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAIS---P  173 (259)
Q Consensus       103 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~~---~  173 (259)
                      .+++.++  ..+..+|||||||+|.++..+++..| .+++++|+ +.+++.+++     ...++++..+|+..+++   +
T Consensus        82 ~~~~~l~--~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~  158 (235)
T 1jg1_A           82 IMLEIAN--LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAP  158 (235)
T ss_dssp             HHHHHHT--CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred             HHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCCCCC
Confidence            3444445  56677999999999999999999988 89999998 888888876     33579999999855544   3


Q ss_pred             ccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          174 AYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       174 ~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      ||+|++..+++++++        ++.+.|+|   ||++++.-.
T Consensus       159 fD~Ii~~~~~~~~~~--------~~~~~L~p---gG~lvi~~~  190 (235)
T 1jg1_A          159 YDVIIVTAGAPKIPE--------PLIEQLKI---GGKLIIPVG  190 (235)
T ss_dssp             EEEEEECSBBSSCCH--------HHHHTEEE---EEEEEEEEC
T ss_pred             ccEEEECCcHHHHHH--------HHHHhcCC---CcEEEEEEe
Confidence            999999999998775        57889999   888877654

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.23  E-value=3.3e-11  Score=99.46  Aligned_cols=98  Identities=8%  Similarity=0.156  Sum_probs=81.5

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCC---C---CCccEEe
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKA---I---SPAYAVL  178 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~---~---~~~D~~~  178 (259)
                      ..+..+|||||||+|..+..+++.+|+.+++++|+ +.+++.|++      ..++++++.+|+.+.   .   ..||+|+
T Consensus        52 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~  131 (233)
T 2gpy_A           52 MAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLF  131 (233)
T ss_dssp             HHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEE
T ss_pred             ccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEE
Confidence            44567999999999999999999999999999999 888888876      236899999999872   2   2599999


Q ss_pred             ehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250          179 LKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI  217 (259)
Q Consensus       179 ~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~  217 (259)
                      +....+     ....+++++.+.|+|   ||.+++.+..
T Consensus       132 ~~~~~~-----~~~~~l~~~~~~L~p---gG~lv~~~~~  162 (233)
T 2gpy_A          132 IDAAKG-----QYRRFFDMYSPMVRP---GGLILSDNVL  162 (233)
T ss_dssp             EEGGGS-----CHHHHHHHHGGGEEE---EEEEEEETTT
T ss_pred             ECCCHH-----HHHHHHHHHHHHcCC---CeEEEEEcCC
Confidence            877664     245789999999999   8988886543

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.22  E-value=3.3e-11  Score=95.61  Aligned_cols=103  Identities=18%  Similarity=0.209  Sum_probs=83.5

Q ss_pred             HHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCCC---C
Q 041250          103 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAI---S  172 (259)
Q Consensus       103 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~---~  172 (259)
                      .+++.+.  .....+|||+|||+|.++..+++..  .+++++|. +.+++.+++      ..+++++..+|+.++.   +
T Consensus        24 ~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~   99 (192)
T 1l3i_A           24 LIMCLAE--PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIP   99 (192)
T ss_dssp             HHHHHHC--CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSC
T ss_pred             HHHHhcC--CCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCC
Confidence            3444455  5667899999999999999999987  78999999 888888776      2268999999987622   4


Q ss_pred             CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250          173 PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI  217 (259)
Q Consensus       173 ~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~  217 (259)
                      .||+|++..++|+     ...+++++.+.|+|   ||++++....
T Consensus       100 ~~D~v~~~~~~~~-----~~~~l~~~~~~l~~---gG~l~~~~~~  136 (192)
T 1l3i_A          100 DIDIAVVGGSGGE-----LQEILRIIKDKLKP---GGRIIVTAIL  136 (192)
T ss_dssp             CEEEEEESCCTTC-----HHHHHHHHHHTEEE---EEEEEEEECB
T ss_pred             CCCEEEECCchHH-----HHHHHHHHHHhcCC---CcEEEEEecC
Confidence            6999999887764     35789999999999   8998887653

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.22  E-value=1.1e-11  Score=101.73  Aligned_cols=102  Identities=12%  Similarity=0.155  Sum_probs=81.0

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC---CC------CCc
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK---AI------SPA  174 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~---~~------~~~  174 (259)
                      ..+..+|||||||+|..+..+++..| +.+++++|+ +.+++.|++      ..++++++.+|+.+   ..      ..|
T Consensus        56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~f  135 (221)
T 3u81_A           56 EYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL  135 (221)
T ss_dssp             HHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCC
T ss_pred             hcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCce
Confidence            34578999999999999999999864 889999999 888888876      34689999999754   12      259


Q ss_pred             cEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250          175 YAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKE  219 (259)
Q Consensus       175 D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~  219 (259)
                      |+|++....|.+.+  ..++++.+ +.|+|   ||.|++.+...+
T Consensus       136 D~V~~d~~~~~~~~--~~~~~~~~-~~Lkp---gG~lv~~~~~~~  174 (221)
T 3u81_A          136 DMVFLDHWKDRYLP--DTLLLEKC-GLLRK---GTVLLADNVIVP  174 (221)
T ss_dssp             SEEEECSCGGGHHH--HHHHHHHT-TCCCT---TCEEEESCCCCC
T ss_pred             EEEEEcCCcccchH--HHHHHHhc-cccCC---CeEEEEeCCCCc
Confidence            99999887776643  34677777 99999   898877766543

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.22  E-value=3.9e-11  Score=98.63  Aligned_cols=101  Identities=17%  Similarity=0.144  Sum_probs=78.6

Q ss_pred             cCCCCeEEEecCC-chHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCC--CCCC--CccEEeehh
Q 041250          112 FEGLNSLVDVGGG-TGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMF--KAIS--PAYAVLLKW  181 (259)
Q Consensus       112 ~~~~~~vlDvGgG-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~--~~~~--~~D~~~~~~  181 (259)
                      ..+..+|||+||| +|.++..+++.. ..+++++|+ +.+++.+++    ...+++++.+|+.  .+.+  .||+|++..
T Consensus        53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~np  131 (230)
T 3evz_A           53 LRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAP  131 (230)
T ss_dssp             CCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECC
T ss_pred             cCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECC
Confidence            4567899999999 999999999987 679999999 888888876    2338999999963  3443  599999887


Q ss_pred             hhccCChHH-----------------HHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          182 ILLDWNDEE-----------------CVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       182 vlh~~~d~~-----------------~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      .+|..++..                 ...+++++.+.|+|   ||++++.-.
T Consensus       132 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~  180 (230)
T 3evz_A          132 PYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNP---GGKVALYLP  180 (230)
T ss_dssp             CCC---------------CCSSSCHHHHHHHHHHGGGEEE---EEEEEEEEE
T ss_pred             CCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCC---CeEEEEEec
Confidence            666544322                 36899999999999   899888643

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.22  E-value=3.1e-11  Score=100.21  Aligned_cols=99  Identities=11%  Similarity=0.149  Sum_probs=74.7

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----------CCCCeEEEeCCCCC--C--CC--Cc
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----------DLVNLKYVGGDMFK--A--IS--PA  174 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~ri~~~~~d~~~--~--~~--~~  174 (259)
                      .+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.|++           ...+++++.+|+.+  +  ++  .+
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~  124 (235)
T 3ckk_A           45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL  124 (235)
T ss_dssp             -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred             CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence            4456899999999999999999999999999999 788876642           34689999999986  2  33  48


Q ss_pred             cEEeehhhhccCChH---H----HHHHHHHHHHhcccCCCCcEEEEEe
Q 041250          175 YAVLLKWILLDWNDE---E----CVKILKKCKEAITRDGKKRKVIIKD  215 (259)
Q Consensus       175 D~~~~~~vlh~~~d~---~----~~~il~~~~~~L~p~~~gg~lli~e  215 (259)
                      |.|++...-. |...   .    ...+|++++++|+|   ||.|++..
T Consensus       125 D~v~~~~~dp-~~k~~h~krr~~~~~~l~~~~~~Lkp---GG~l~~~t  168 (235)
T 3ckk_A          125 TKMFFLFPDP-HFKRTKHKWRIISPTLLAEYAYVLRV---GGLVYTIT  168 (235)
T ss_dssp             EEEEEESCC------------CCCHHHHHHHHHHEEE---EEEEEEEE
T ss_pred             eEEEEeCCCc-hhhhhhhhhhhhhHHHHHHHHHHCCC---CCEEEEEe
Confidence            9887643221 2110   0    13699999999999   89888764

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.22  E-value=7.4e-11  Score=103.21  Aligned_cols=105  Identities=14%  Similarity=0.140  Sum_probs=80.8

Q ss_pred             HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhccc------CCCCeEEEeCCCCC-CCC--
Q 041250          102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES------DLVNLKYVGGDMFK-AIS--  172 (259)
Q Consensus       102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~d~~~-~~~--  172 (259)
                      ..+.+...  ..+..+|||||||+|.++..++++ +..+++++|+.++++.|++      ..++++++.+|+.+ +.+  
T Consensus        54 ~~i~~~~~--~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  130 (340)
T 2fyt_A           54 DFIYQNPH--IFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVE  130 (340)
T ss_dssp             HHHHHCGG--GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCS
T ss_pred             HHHHhhhh--hcCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCC
Confidence            34444444  556789999999999999999887 4568999999668888776      23799999999988 555  


Q ss_pred             CccEEeehhhhccC-ChHHHHHHHHHHHHhcccCCCCcEEE
Q 041250          173 PAYAVLLKWILLDW-NDEECVKILKKCKEAITRDGKKRKVI  212 (259)
Q Consensus       173 ~~D~~~~~~vlh~~-~d~~~~~il~~~~~~L~p~~~gg~ll  212 (259)
                      +||+|++..+.+.+ .......+++++.+.|+|   ||+++
T Consensus       131 ~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~Lkp---gG~li  168 (340)
T 2fyt_A          131 KVDVIISEWMGYFLLFESMLDSVLYAKNKYLAK---GGSVY  168 (340)
T ss_dssp             CEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEE---EEEEE
T ss_pred             cEEEEEEcCchhhccCHHHHHHHHHHHHhhcCC---CcEEE
Confidence            59999987643332 223456799999999999   88876

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.22  E-value=2.3e-11  Score=99.73  Aligned_cols=101  Identities=9%  Similarity=0.074  Sum_probs=81.7

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCC---C------CCc
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKA---I------SPA  174 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~---~------~~~  174 (259)
                      ..+..+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++      ..++++++.+|..+.   .      ..|
T Consensus        62 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  141 (225)
T 3tr6_A           62 LMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQY  141 (225)
T ss_dssp             HHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCE
T ss_pred             hhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCc
Confidence            34567999999999999999999988 789999999 888888876      346799999998662   1      459


Q ss_pred             cEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecC
Q 041250          175 YAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKEN  220 (259)
Q Consensus       175 D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~  220 (259)
                      |+|++..     +.+....+++++.+.|+|   ||.|++.+...+.
T Consensus       142 D~v~~~~-----~~~~~~~~l~~~~~~L~p---gG~lv~~~~~~~g  179 (225)
T 3tr6_A          142 DLIYIDA-----DKANTDLYYEESLKLLRE---GGLIAVDNVLRRG  179 (225)
T ss_dssp             EEEEECS-----CGGGHHHHHHHHHHHEEE---EEEEEEECSSGGG
T ss_pred             cEEEECC-----CHHHHHHHHHHHHHhcCC---CcEEEEeCCCcCC
Confidence            9998654     234456799999999999   8988887776543

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.22  E-value=6.8e-12  Score=107.02  Aligned_cols=129  Identities=16%  Similarity=0.098  Sum_probs=87.6

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-CC------------C---------------------
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-DL------------V---------------------  158 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~------------~---------------------  158 (259)
                      ...+|||||||+|.+. .++...+..+++++|+ +.+++.|++ ..            .                     
T Consensus        71 ~~~~vLDiGcG~G~~~-~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  149 (289)
T 2g72_A           71 SGRTLIDIGSGPTVYQ-LLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA  149 (289)
T ss_dssp             CCSEEEEETCTTCCGG-GTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred             CCCeEEEECCCcChHH-HHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence            4679999999999944 3444444569999999 888887664 10            0                     


Q ss_pred             -CeEEEeCCCCC--C-----CC--CccEEeehhhhccCChH--HHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCch
Q 041250          159 -NLKYVGGDMFK--A-----IS--PAYAVLLKWILLDWNDE--ECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYK  226 (259)
Q Consensus       159 -ri~~~~~d~~~--~-----~~--~~D~~~~~~vlh~~~d~--~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~  226 (259)
                       .++++.+|+.+  +     .+  .||+|++..++|+.+++  +..++|++++++|+|   ||+|++.+.... ...   
T Consensus       150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~Lkp---GG~l~~~~~~~~-~~~---  222 (289)
T 2g72_A          150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRP---GGHLLLIGALEE-SWY---  222 (289)
T ss_dssp             HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEEEEESC-CEE---
T ss_pred             hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCC---CCEEEEEEecCc-ceE---
Confidence             14566778876  2     22  29999999999985533  567899999999999   999999864321 100   


Q ss_pred             hhhhhhhhhhhhhhccCccccCHHHHHHHHhcC
Q 041250          227 SIETQLFFEMFMMVLLTGTERDEKEWAKIFADS  259 (259)
Q Consensus       227 ~~~~~~~~d~~m~~~~~g~~rt~~e~~~ll~~a  259 (259)
                        .   ..+.    ......++.++|+++|+++
T Consensus       223 --~---~~~~----~~~~~~~~~~~l~~~l~~a  246 (289)
T 2g72_A          223 --L---AGEA----RLTVVPVSEEEVREALVRS  246 (289)
T ss_dssp             --E---ETTE----EEECCCCCHHHHHHHHHHT
T ss_pred             --E---cCCe----eeeeccCCHHHHHHHHHHc
Confidence              0   0000    0112346888999888764

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.22  E-value=5.5e-11  Score=105.57  Aligned_cols=97  Identities=9%  Similarity=0.046  Sum_probs=82.1

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCC-CCC--CccEEeehhhhcc
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-AIS--PAYAVLLKWILLD  185 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~~~--~~D~~~~~~vlh~  185 (259)
                      ...+|||+|||+|.++..+++.  +.+++++|+ +.+++.+++    ...+++++.+|+.+ ..+  .||+|++...+|.
T Consensus       233 ~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~  310 (381)
T 3dmg_A          233 RGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHV  310 (381)
T ss_dssp             TTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCT
T ss_pred             CCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhh
Confidence            4679999999999999999998  569999999 888888876    33459999999998 333  5999999999887


Q ss_pred             ---CChHHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250          186 ---WNDEECVKILKKCKEAITRDGKKRKVIIKD  215 (259)
Q Consensus       186 ---~~d~~~~~il~~~~~~L~p~~~gg~lli~e  215 (259)
                         ...+...++++++.+.|+|   ||+++|+.
T Consensus       311 ~~~~~~~~~~~~l~~~~~~Lkp---GG~l~iv~  340 (381)
T 3dmg_A          311 GGAVILDVAQAFVNVAAARLRP---GGVFFLVS  340 (381)
T ss_dssp             TCSSCCHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred             cccccHHHHHHHHHHHHHhcCc---CcEEEEEE
Confidence               3456678999999999999   89988864

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.21  E-value=6.8e-11  Score=97.26  Aligned_cols=99  Identities=16%  Similarity=0.125  Sum_probs=80.6

Q ss_pred             HHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEeCCCCCCCC---Ccc
Q 041250          103 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFKAIS---PAY  175 (259)
Q Consensus       103 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~~~~---~~D  175 (259)
                      .+++.+.  ..+..+|||||||+|.++..+++..  .+++++|+ +.+++.+++   ...+++++.+|+.+..+   .||
T Consensus        61 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD  136 (231)
T 1vbf_A           61 FMLDELD--LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYD  136 (231)
T ss_dssp             HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEE
T ss_pred             HHHHhcC--CCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCcc
Confidence            3444444  5667899999999999999999986  68999999 888888876   22289999999987332   599


Q ss_pred             EEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          176 AVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       176 ~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      +|++..++|++++        ++.+.|+|   ||++++...
T Consensus       137 ~v~~~~~~~~~~~--------~~~~~L~p---gG~l~~~~~  166 (231)
T 1vbf_A          137 RVVVWATAPTLLC--------KPYEQLKE---GGIMILPIG  166 (231)
T ss_dssp             EEEESSBBSSCCH--------HHHHTEEE---EEEEEEEEC
T ss_pred             EEEECCcHHHHHH--------HHHHHcCC---CcEEEEEEc
Confidence            9999999998874        47889999   899888764

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.21  E-value=3.4e-11  Score=99.50  Aligned_cols=95  Identities=9%  Similarity=0.085  Sum_probs=74.1

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeec-hHHHhhccc---CCCCeEEEeCCCCCC--C---C-CccEEeeh
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFKA--I---S-PAYAVLLK  180 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~~--~---~-~~D~~~~~  180 (259)
                      +....+|||+|||+|.++..+++.+ |+.+++++|+ +.+++.+.+   ...+++++.+|+.++  .   + .||+|++.
T Consensus        75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~  154 (233)
T 2ipx_A           75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFAD  154 (233)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEEC
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEc
Confidence            5567899999999999999999986 7789999999 554443332   237899999999872  2   2 49999984


Q ss_pred             hhhccCChHHHHHHHHHHHHhcccCCCCcEEEE
Q 041250          181 WILLDWNDEECVKILKKCKEAITRDGKKRKVII  213 (259)
Q Consensus       181 ~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli  213 (259)
                      ..    ..+....+++++.+.|+|   ||.+++
T Consensus       155 ~~----~~~~~~~~~~~~~~~Lkp---gG~l~i  180 (233)
T 2ipx_A          155 VA----QPDQTRIVALNAHTFLRN---GGHFVI  180 (233)
T ss_dssp             CC----CTTHHHHHHHHHHHHEEE---EEEEEE
T ss_pred             CC----CccHHHHHHHHHHHHcCC---CeEEEE
Confidence            33    334456789999999999   888877

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.20  E-value=5.8e-11  Score=99.75  Aligned_cols=99  Identities=9%  Similarity=0.041  Sum_probs=78.4

Q ss_pred             cC-CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-C--CC--CccEEe
Q 041250          112 FE-GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-A--IS--PAYAVL  178 (259)
Q Consensus       112 ~~-~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~--~~--~~D~~~  178 (259)
                      .. +..+|||+|||+|.++..++++.+. +++++|+ +.+++.|++      ..+|++++.+|+.+ +  ++  .||+|+
T Consensus        46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii  124 (259)
T 3lpm_A           46 LPIRKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVT  124 (259)
T ss_dssp             CCSSCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEE
T ss_pred             CCCCCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEE
Confidence            45 6789999999999999999999776 9999999 888888876      34689999999988 3  32  599999


Q ss_pred             ehhhhccC------------------ChHHHHHHHHHHHHhcccCCCCcEEEEE
Q 041250          179 LKWILLDW------------------NDEECVKILKKCKEAITRDGKKRKVIIK  214 (259)
Q Consensus       179 ~~~vlh~~------------------~d~~~~~il~~~~~~L~p~~~gg~lli~  214 (259)
                      +...++..                  .......+++.+.+.|+|   ||+++++
T Consensus       125 ~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~  175 (259)
T 3lpm_A          125 CNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQ---GGKANFV  175 (259)
T ss_dssp             ECCCC-----------------------HHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred             ECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccC---CcEEEEE
Confidence            96443322                  113345799999999999   8998885

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.20  E-value=3.2e-11  Score=106.97  Aligned_cols=102  Identities=10%  Similarity=0.063  Sum_probs=82.2

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhccc------CCCCeEEEeCCCCC-CCC-CccEEeehhhh
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES------DLVNLKYVGGDMFK-AIS-PAYAVLLKWIL  183 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~d~~~-~~~-~~D~~~~~~vl  183 (259)
                      ..+..+|||||||+|.++..++++. ..+++++|...+++.+++      ..++++++.+|+.+ +.+ .||+|++..+.
T Consensus        61 ~~~~~~VLDlGcGtG~ls~~la~~g-~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~~~~~  139 (376)
T 3r0q_C           61 HFEGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWMG  139 (376)
T ss_dssp             TTTTCEEEEESCTTTHHHHHHHHTT-CSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEECCCB
T ss_pred             cCCCCEEEEeccCcCHHHHHHHhcC-CCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEEcChh
Confidence            4557899999999999999999883 348999999888877776      45789999999988 555 59999997766


Q ss_pred             ccCCh-HHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250          184 LDWND-EECVKILKKCKEAITRDGKKRKVIIKDMI  217 (259)
Q Consensus       184 h~~~d-~~~~~il~~~~~~L~p~~~gg~lli~e~~  217 (259)
                      |.... .....+++++.+.|+|   ||.+++.+..
T Consensus       140 ~~l~~e~~~~~~l~~~~~~Lkp---gG~li~~~~~  171 (376)
T 3r0q_C          140 YFLLRESMFDSVISARDRWLKP---TGVMYPSHAR  171 (376)
T ss_dssp             TTBTTTCTHHHHHHHHHHHEEE---EEEEESSEEE
T ss_pred             hcccchHHHHHHHHHHHhhCCC---CeEEEEecCe
Confidence            66543 3356799999999999   8988776654

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.20  E-value=9.4e-11  Score=91.59  Aligned_cols=105  Identities=16%  Similarity=0.225  Sum_probs=81.9

Q ss_pred             HHHhcccccCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeechHHHhhcccCCCCeEEEeCCCCC-C--------CC-
Q 041250          104 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDLPHVVNGLESDLVNLKYVGGDMFK-A--------IS-  172 (259)
Q Consensus       104 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~-~--------~~-  172 (259)
                      +++.+. ......+|||+|||+|.++..+++.+ |+.+++++|+.+++.     ..+++++.+|+.+ +        .+ 
T Consensus        13 ~~~~~~-~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~-----~~~~~~~~~d~~~~~~~~~~~~~~~~   86 (180)
T 1ej0_A           13 IQQSDK-LFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDP-----IVGVDFLQGDFRDELVMKALLERVGD   86 (180)
T ss_dssp             HHHHHC-CCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCC-----CTTEEEEESCTTSHHHHHHHHHHHTT
T ss_pred             HHHHhC-CCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECccccc-----cCcEEEEEcccccchhhhhhhccCCC
Confidence            444443 13456799999999999999999984 778999999955432     2689999999988 4        54 


Q ss_pred             -CccEEeehhhhccCChHH---------HHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250          173 -PAYAVLLKWILLDWNDEE---------CVKILKKCKEAITRDGKKRKVIIKDMI  217 (259)
Q Consensus       173 -~~D~~~~~~vlh~~~d~~---------~~~il~~~~~~L~p~~~gg~lli~e~~  217 (259)
                       .||+|++...+|..+...         ...+++++.+.|+|   ||.+++..+.
T Consensus        87 ~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~---gG~l~~~~~~  138 (180)
T 1ej0_A           87 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAP---GGSFVVKVFQ  138 (180)
T ss_dssp             CCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEEES
T ss_pred             CceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCC---CcEEEEEEec
Confidence             499999988888665431         15889999999999   8998887653

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.20  E-value=2.1e-12  Score=108.12  Aligned_cols=101  Identities=10%  Similarity=-0.044  Sum_probs=73.9

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCC----CCCC-----CccEE
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMF----KAIS-----PAYAV  177 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~----~~~~-----~~D~~  177 (259)
                      ...+|||+|||+|.++..+++++|+.+++++|+ +.+++.|++      ...+++++.+|..    ++.+     .||+|
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i  144 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC  144 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence            467999999999999999999988899999999 899988876      3457999999853    3333     49999


Q ss_pred             eehhhhccCCh-------------HHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250          178 LLKWILLDWND-------------EECVKILKKCKEAITRDGKKRKVIIKDMI  217 (259)
Q Consensus       178 ~~~~vlh~~~d-------------~~~~~il~~~~~~L~p~~~gg~lli~e~~  217 (259)
                      ++...+|....             +....++++++++|+|   ||++.+++.+
T Consensus       145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Lkp---gG~l~~~~~~  194 (254)
T 2h00_A          145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAE---GGELEFVKRI  194 (254)
T ss_dssp             EECCCCC-------------------------CTTTTHHH---HTHHHHHHHH
T ss_pred             EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEec---CCEEEEEHHH
Confidence            99866654331             1123567888999999   8888777654

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.20  E-value=1.3e-10  Score=93.50  Aligned_cols=103  Identities=16%  Similarity=0.132  Sum_probs=77.8

Q ss_pred             HHHhcccccCCCCeEEEecCCchHHHHHHHHHCC--CCeEEEeechHHHhhcccCCCCeEEEeCCCCC-C----------
Q 041250          104 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFP--KLECTCFDLPHVVNGLESDLVNLKYVGGDMFK-A----------  170 (259)
Q Consensus       104 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p--~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~-~----------  170 (259)
                      +.+.+. .+....+|||+|||+|.++..+++++|  +.+++++|+.++.     ..++++++.+|+.+ +          
T Consensus        13 ~~~~~~-~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----~~~~v~~~~~d~~~~~~~~~~~~~~i   86 (201)
T 2plw_A           13 LDNKYL-FLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----PIPNVYFIQGEIGKDNMNNIKNINYI   86 (201)
T ss_dssp             HHHHHC-CCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----CCTTCEEEECCTTTTSSCCC------
T ss_pred             HHHHcC-CCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----CCCCceEEEccccchhhhhhcccccc
Confidence            444544 235567999999999999999999998  6899999995531     24579999999987 4          


Q ss_pred             ---------------CC--CccEEeehhhhccCC----hHH-----HHHHHHHHHHhcccCCCCcEEEEEe
Q 041250          171 ---------------IS--PAYAVLLKWILLDWN----DEE-----CVKILKKCKEAITRDGKKRKVIIKD  215 (259)
Q Consensus       171 ---------------~~--~~D~~~~~~vlh~~~----d~~-----~~~il~~~~~~L~p~~~gg~lli~e  215 (259)
                                     ++  .||+|++...+|...    +..     ..++++++.++|+|   ||++++..
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkp---gG~lv~~~  154 (201)
T 2plw_A           87 DNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINI---GGTYIVKM  154 (201)
T ss_dssp             -----CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred             ccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccC---CCEEEEEE
Confidence                           34  599999887776432    211     13489999999999   89887744

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.19  E-value=1.3e-11  Score=104.14  Aligned_cols=100  Identities=15%  Similarity=0.097  Sum_probs=76.8

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCC-eEEEeec-hHHHhhccc----CC-----------------------------
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKL-ECTCFDL-PHVVNGLES----DL-----------------------------  157 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~----~~-----------------------------  157 (259)
                      .+..+|||||||+|.++..++..  +. +++++|+ +.+++.|++    ..                             
T Consensus        54 ~~g~~vLDiGCG~G~~~~~~~~~--~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~  131 (263)
T 2a14_A           54 LQGDTLIDIGSGPTIYQVLAACD--SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL  131 (263)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGG--TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             CCCceEEEeCCCccHHHHHHHHh--hhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence            34578999999999887765544  33 6999999 888887764    10                             


Q ss_pred             -CCeE-EEeCCCCCC-------CCCccEEeehhhhccC-C-hHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250          158 -VNLK-YVGGDMFKA-------ISPAYAVLLKWILLDW-N-DEECVKILKKCKEAITRDGKKRKVIIKDMI  217 (259)
Q Consensus       158 -~ri~-~~~~d~~~~-------~~~~D~~~~~~vlh~~-~-d~~~~~il~~~~~~L~p~~~gg~lli~e~~  217 (259)
                       .+++ ++.+|+.+.       .+.||+|++..+||+. + .++..++|++++++|+|   ||++++.+..
T Consensus       132 ~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKP---GG~li~~~~~  199 (263)
T 2a14_A          132 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKP---GGHLVTTVTL  199 (263)
T ss_dssp             HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEEEES
T ss_pred             HhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCC---CcEEEEEEee
Confidence             1244 889999872       2359999999999974 3 35667899999999999   9999998653

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.19  E-value=6.9e-11  Score=98.71  Aligned_cols=104  Identities=20%  Similarity=0.245  Sum_probs=85.4

Q ss_pred             HHHHHhcccccCCCCeEEEecCCchHHHHHHHHH-CCCCeEEEeec-hHHHhhcccC------CCCeEEEeCCCCC-CCC
Q 041250          102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKA-FPKLECTCFDL-PHVVNGLESD------LVNLKYVGGDMFK-AIS  172 (259)
Q Consensus       102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~------~~ri~~~~~d~~~-~~~  172 (259)
                      ..++..++  +....+|||+|||+|.++..+++. .|..+++++|+ +.+++.+++.      .+++++..+|+.+ +++
T Consensus        86 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~  163 (258)
T 2pwy_A           86 SAMVTLLD--LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELE  163 (258)
T ss_dssp             HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCC
T ss_pred             HHHHHHcC--CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCC
Confidence            34566666  667789999999999999999998 78899999998 8888888761      3789999999988 365


Q ss_pred             --CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250          173 --PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI  217 (259)
Q Consensus       173 --~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~  217 (259)
                        .||+|++     ++++.  ..+++++.++|+|   ||++++..+.
T Consensus       164 ~~~~D~v~~-----~~~~~--~~~l~~~~~~L~~---gG~l~~~~~~  200 (258)
T 2pwy_A          164 EAAYDGVAL-----DLMEP--WKVLEKAALALKP---DRFLVAYLPN  200 (258)
T ss_dssp             TTCEEEEEE-----ESSCG--GGGHHHHHHHEEE---EEEEEEEESC
T ss_pred             CCCcCEEEE-----CCcCH--HHHHHHHHHhCCC---CCEEEEEeCC
Confidence              4999987     34443  3789999999999   9999998854

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.19  E-value=9.1e-11  Score=101.59  Aligned_cols=101  Identities=15%  Similarity=0.241  Sum_probs=82.3

Q ss_pred             HHHHhcccccCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCCC---C
Q 041250          103 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAI---S  172 (259)
Q Consensus       103 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~---~  172 (259)
                      .+++.+.  ..+..+|||||||+|.++..+++..+ +.+++++|+ +++++.+++     ...+++++.+|+.+..   .
T Consensus        66 ~l~~~l~--~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~  143 (317)
T 1dl5_A           66 LFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFS  143 (317)
T ss_dssp             HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred             HHHHhcC--CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCC
Confidence            3455555  56678999999999999999999887 478999999 888888876     3457999999998732   2


Q ss_pred             CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          173 PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       173 ~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      +||+|++..++|+.+        +++.+.|+|   ||++++...
T Consensus       144 ~fD~Iv~~~~~~~~~--------~~~~~~Lkp---gG~lvi~~~  176 (317)
T 1dl5_A          144 PYDVIFVTVGVDEVP--------ETWFTQLKE---GGRVIVPIN  176 (317)
T ss_dssp             CEEEEEECSBBSCCC--------HHHHHHEEE---EEEEEEEBC
T ss_pred             CeEEEEEcCCHHHHH--------HHHHHhcCC---CcEEEEEEC
Confidence            599999999999887        457789999   899888753

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.18  E-value=5.2e-11  Score=100.30  Aligned_cols=94  Identities=14%  Similarity=0.198  Sum_probs=80.0

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCC-CCC--CccEEeehhhhccCCh
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK-AIS--PAYAVLLKWILLDWND  188 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~~--~~D~~~~~~vlh~~~d  188 (259)
                      ....+|||||||+|.++..+++..|+.+++++|+ +.+++.+++...++.+..+|+.+ +.+  .||+|++..+.     
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~-----  158 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP-----  158 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCC-----
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCCh-----
Confidence            4567999999999999999999998899999999 88999888766789999999987 554  59999976542     


Q ss_pred             HHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 041250          189 EECVKILKKCKEAITRDGKKRKVIIKDMIK  218 (259)
Q Consensus       189 ~~~~~il~~~~~~L~p~~~gg~lli~e~~~  218 (259)
                          ..++++.++|+|   ||++++..+..
T Consensus       159 ----~~l~~~~~~L~p---gG~l~~~~~~~  181 (269)
T 1p91_A          159 ----CKAEELARVVKP---GGWVITATPGP  181 (269)
T ss_dssp             ----CCHHHHHHHEEE---EEEEEEEEECT
T ss_pred             ----hhHHHHHHhcCC---CcEEEEEEcCH
Confidence                258999999999   99999887643

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.18  E-value=2.1e-11  Score=101.63  Aligned_cols=101  Identities=13%  Similarity=0.160  Sum_probs=81.4

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC--C-C------CCc
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK--A-I------SPA  174 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~--~-~------~~~  174 (259)
                      ..+..+|||||||+|..+..+++..| +.+++++|+ +.+++.|++      ..++|+++.+|..+  + .      ..|
T Consensus        58 ~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~f  137 (242)
T 3r3h_A           58 LTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQF  137 (242)
T ss_dssp             HHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCE
T ss_pred             hcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCE
Confidence            34578999999999999999999986 889999999 888888776      34699999999976  2 2      359


Q ss_pred             cEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecC
Q 041250          175 YAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKEN  220 (259)
Q Consensus       175 D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~  220 (259)
                      |+|++...     ......+++++.+.|+|   ||.|++.+.....
T Consensus       138 D~V~~d~~-----~~~~~~~l~~~~~~Lkp---GG~lv~d~~~~~g  175 (242)
T 3r3h_A          138 DFIFIDAD-----KTNYLNYYELALKLVTP---KGLIAIDNIFWDG  175 (242)
T ss_dssp             EEEEEESC-----GGGHHHHHHHHHHHEEE---EEEEEEECSSSSS
T ss_pred             eEEEEcCC-----hHHhHHHHHHHHHhcCC---CeEEEEECCccCC
Confidence            99987643     33356789999999999   8888777665543

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.18  E-value=3.4e-11  Score=100.45  Aligned_cols=94  Identities=17%  Similarity=0.250  Sum_probs=73.3

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-------------CCCCeEEEeCCCCCC----CC--
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-------------DLVNLKYVGGDMFKA----IS--  172 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------~~~ri~~~~~d~~~~----~~--  172 (259)
                      ....+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++             ..++++++.+|+++.    ++  
T Consensus        48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~  127 (246)
T 2vdv_E           48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKG  127 (246)
T ss_dssp             SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTT
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccc
Confidence            4567899999999999999999999999999998 788877654             126899999999872    22  


Q ss_pred             CccEEeehhhhccCChHHH-----------HHHHHHHHHhcccCCCCcEEEEE
Q 041250          173 PAYAVLLKWILLDWNDEEC-----------VKILKKCKEAITRDGKKRKVIIK  214 (259)
Q Consensus       173 ~~D~~~~~~vlh~~~d~~~-----------~~il~~~~~~L~p~~~gg~lli~  214 (259)
                      .+|.+++.     +++...           ..+++++.++|+|   ||.|++.
T Consensus       128 ~~d~v~~~-----~p~p~~k~~~~~~r~~~~~~l~~~~~~Lkp---gG~l~~~  172 (246)
T 2vdv_E          128 QLSKMFFC-----FPDPHFKQRKHKARIITNTLLSEYAYVLKE---GGVVYTI  172 (246)
T ss_dssp             CEEEEEEE-----SCCCC------CSSCCCHHHHHHHHHHEEE---EEEEEEE
T ss_pred             ccCEEEEE-----CCCcccccchhHHhhccHHHHHHHHHHcCC---CCEEEEE
Confidence            36766633     232210           3799999999999   8988884

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.18  E-value=1.3e-10  Score=95.37  Aligned_cols=96  Identities=15%  Similarity=0.169  Sum_probs=75.3

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeec-hHHHhhccc---CCCCeEEEeCCCCCC-----CC-CccEEeeh
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFKA-----IS-PAYAVLLK  180 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~~-----~~-~~D~~~~~  180 (259)
                      +....+|||+|||+|.++..+++.. |+.+++++|. +.+++.+++   ..++++++.+|+.++     .+ .||+|++.
T Consensus        71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~  150 (227)
T 1g8a_A           71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED  150 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence            4566799999999999999999885 6789999999 766665544   337999999999872     23 49999965


Q ss_pred             hhhccCChHHHHHHHHHHHHhcccCCCCcEEEEE
Q 041250          181 WILLDWNDEECVKILKKCKEAITRDGKKRKVIIK  214 (259)
Q Consensus       181 ~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~  214 (259)
                      ..    ..+....+++++.+.|+|   ||++++.
T Consensus       151 ~~----~~~~~~~~l~~~~~~Lkp---gG~l~~~  177 (227)
T 1g8a_A          151 VA----QPTQAKILIDNAEVYLKR---GGYGMIA  177 (227)
T ss_dssp             CC----STTHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred             CC----CHhHHHHHHHHHHHhcCC---CCEEEEE
Confidence            33    233344569999999999   8999888

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.17  E-value=9.7e-11  Score=96.81  Aligned_cols=101  Identities=13%  Similarity=0.151  Sum_probs=79.7

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHH-CCCCeEEEeec-hHHHhhccc---CCCCeEEEeCCCCCC--CC----CccEEeeh
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKA-FPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFKA--IS----PAYAVLLK  180 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~~--~~----~~D~~~~~  180 (259)
                      +....+|||+|||+|.++..+++. .|+.+++++|+ |.+++.+++   ...++..+.+|...+  .+    .+|++++.
T Consensus        75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d  154 (233)
T 4df3_A           75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYAD  154 (233)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEEC
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEEe
Confidence            677899999999999999999997 59999999999 888887766   457899999988773  12    37877643


Q ss_pred             hhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250          181 WILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKE  219 (259)
Q Consensus       181 ~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~  219 (259)
                        +++.  ++...+++++++.|||   ||+++|......
T Consensus       155 --~~~~--~~~~~~l~~~~r~LKp---GG~lvI~ik~r~  186 (233)
T 4df3_A          155 --VAQP--EQAAIVVRNARFFLRD---GGYMLMAIKARS  186 (233)
T ss_dssp             --CCCT--THHHHHHHHHHHHEEE---EEEEEEEEECCH
T ss_pred             --ccCC--hhHHHHHHHHHHhccC---CCEEEEEEeccc
Confidence              2222  2345789999999999   999988754433

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.17  E-value=3.8e-11  Score=103.48  Aligned_cols=100  Identities=11%  Similarity=0.077  Sum_probs=77.5

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---------CCCCeEEEeCCCCC-C-C--C-CccEE
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---------DLVNLKYVGGDMFK-A-I--S-PAYAV  177 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~ri~~~~~d~~~-~-~--~-~~D~~  177 (259)
                      +++.+|||||||+|.++..+++..|..+++++|+ +.+++.+++         ..+|++++.+|..+ . .  + .||+|
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI  173 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence            4568999999999999999998878889999999 888888876         24799999999977 2 1  2 59999


Q ss_pred             eehhhhccCChHHH--HHHHHHHHHhcccCCCCcEEEEEe
Q 041250          178 LLKWILLDWNDEEC--VKILKKCKEAITRDGKKRKVIIKD  215 (259)
Q Consensus       178 ~~~~vlh~~~d~~~--~~il~~~~~~L~p~~~gg~lli~e  215 (259)
                      ++....+.++....  ..++++++++|+|   ||.+++..
T Consensus       174 i~d~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~~  210 (304)
T 3bwc_A          174 IIDTTDPAGPASKLFGEAFYKDVLRILKP---DGICCNQG  210 (304)
T ss_dssp             EEECC---------CCHHHHHHHHHHEEE---EEEEEEEE
T ss_pred             EECCCCccccchhhhHHHHHHHHHHhcCC---CcEEEEec
Confidence            99777666654433  5789999999999   89888764

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.17  E-value=3.3e-11  Score=94.16  Aligned_cols=96  Identities=9%  Similarity=-0.009  Sum_probs=72.7

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCCCCC-------CccEEeehh
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFKAIS-------PAYAVLLKW  181 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~~~~-------~~D~~~~~~  181 (259)
                      ...+|||+|||+|.++..+++..++  ++++|+ +.+++.+++    ...+++++.+|+.+..+       .||+|++..
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~~~--v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~  118 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEGWE--AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP  118 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTCE--EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence            5679999999999999999998765  999999 888888876    11289999999976211       599999998


Q ss_pred             hhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          182 ILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       182 vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      .+| ...++..+.+.+ .+.|+|   ||.+++...
T Consensus       119 ~~~-~~~~~~~~~~~~-~~~L~~---gG~~~~~~~  148 (171)
T 1ws6_A          119 PYA-MDLAALFGELLA-SGLVEA---GGLYVLQHP  148 (171)
T ss_dssp             CTT-SCTTHHHHHHHH-HTCEEE---EEEEEEEEE
T ss_pred             CCc-hhHHHHHHHHHh-hcccCC---CcEEEEEeC
Confidence            777 222333333333 499999   888776554

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.17  E-value=7.2e-11  Score=102.78  Aligned_cols=98  Identities=12%  Similarity=0.127  Sum_probs=77.3

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhccc------CCCCeEEEeCCCCC-CCC--CccEEeehhh
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES------DLVNLKYVGGDMFK-AIS--PAYAVLLKWI  182 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~d~~~-~~~--~~D~~~~~~v  182 (259)
                      ..+..+|||||||+|.++..++++ +..+++++|..++++.|++      ..++++++.+|+.+ +.|  ++|+|++..+
T Consensus        36 ~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~  114 (328)
T 1g6q_1           36 LFKDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWM  114 (328)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCC
T ss_pred             hcCCCEEEEecCccHHHHHHHHHC-CCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCc
Confidence            445679999999999999998886 4568999999778877765      34789999999988 555  5999998865


Q ss_pred             hccCC-hHHHHHHHHHHHHhcccCCCCcEEEE
Q 041250          183 LLDWN-DEECVKILKKCKEAITRDGKKRKVII  213 (259)
Q Consensus       183 lh~~~-d~~~~~il~~~~~~L~p~~~gg~lli  213 (259)
                      .|.+. .+....+++++.+.|+|   ||.++.
T Consensus       115 ~~~l~~~~~~~~~l~~~~~~Lkp---gG~li~  143 (328)
T 1g6q_1          115 GYFLLYESMMDTVLYARDHYLVE---GGLIFP  143 (328)
T ss_dssp             BTTBSTTCCHHHHHHHHHHHEEE---EEEEES
T ss_pred             hhhcccHHHHHHHHHHHHhhcCC---CeEEEE
Confidence            44432 23345789999999999   888763

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.16  E-value=8.1e-11  Score=93.32  Aligned_cols=97  Identities=13%  Similarity=0.043  Sum_probs=75.0

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCC-------CCCccEEe
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKA-------ISPAYAVL  178 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~-------~~~~D~~~  178 (259)
                      ....+|||+|||+|.++..+++ .+..+++++|+ +.+++.+++      ..++++++.+|+.+.       ...||+|+
T Consensus        43 ~~~~~vLD~GcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~  121 (187)
T 2fhp_A           43 FDGGMALDLYSGSGGLAIEAVS-RGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL  121 (187)
T ss_dssp             CSSCEEEETTCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             cCCCCEEEeCCccCHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEE
Confidence            3467999999999999999887 45679999999 889888876      236899999999872       23599999


Q ss_pred             ehhhhccCChHHHHHHHHHH--HHhcccCCCCcEEEEEee
Q 041250          179 LKWILLDWNDEECVKILKKC--KEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       179 ~~~vlh~~~d~~~~~il~~~--~~~L~p~~~gg~lli~e~  216 (259)
                      +...+|....+   ..++.+  .+.|+|   ||.+++...
T Consensus       122 ~~~~~~~~~~~---~~~~~l~~~~~L~~---gG~l~~~~~  155 (187)
T 2fhp_A          122 LDPPYAKQEIV---SQLEKMLERQLLTN---EAVIVCETD  155 (187)
T ss_dssp             ECCCGGGCCHH---HHHHHHHHTTCEEE---EEEEEEEEE
T ss_pred             ECCCCCchhHH---HHHHHHHHhcccCC---CCEEEEEeC
Confidence            98776643333   345555  788999   888776654

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.15  E-value=1.1e-10  Score=96.30  Aligned_cols=97  Identities=7%  Similarity=-0.027  Sum_probs=79.7

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCCC-C--CccEEeehh
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAI-S--PAYAVLLKW  181 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~-~--~~D~~~~~~  181 (259)
                      .++..+|+|||||+|.+++.+++..|..+++++|+ |.+++.|++      ..++|++..+|.++.. +  .||+|++..
T Consensus        19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaG   98 (230)
T 3lec_A           19 VPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICG   98 (230)
T ss_dssp             SCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred             CCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeC
Confidence            34567999999999999999999999889999999 889988887      4578999999999943 3  499988765


Q ss_pred             hhccCChHHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250          182 ILLDWNDEECVKILKKCKEAITRDGKKRKVIIKD  215 (259)
Q Consensus       182 vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e  215 (259)
                      +    ..+....||....+.|++   +|++++.-
T Consensus        99 m----Gg~lI~~IL~~~~~~l~~---~~~lIlqp  125 (230)
T 3lec_A           99 M----GGRLIADILNNDIDKLQH---VKTLVLQP  125 (230)
T ss_dssp             E----CHHHHHHHHHHTGGGGTT---CCEEEEEE
T ss_pred             C----chHHHHHHHHHHHHHhCc---CCEEEEEC
Confidence            3    335567889888888988   77766655

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.15  E-value=1.3e-10  Score=98.50  Aligned_cols=104  Identities=17%  Similarity=0.189  Sum_probs=84.8

Q ss_pred             HHHHHhcccccCCCCeEEEecCCchHHHHHHHHH-CCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCCCC-
Q 041250          102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKA-FPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAIS-  172 (259)
Q Consensus       102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~-  172 (259)
                      ..++..++  +....+|||+|||+|.++..+++. .|..+++++|+ +.+++.+++      ..++++++.+|+.+.++ 
T Consensus       102 ~~i~~~~~--~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  179 (277)
T 1o54_A          102 SFIAMMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDE  179 (277)
T ss_dssp             HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSC
T ss_pred             HHHHHHhC--CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccC
Confidence            34566666  667789999999999999999999 78899999999 888888876      12689999999988544 


Q ss_pred             -CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250          173 -PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI  217 (259)
Q Consensus       173 -~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~  217 (259)
                       .||+|++     +.++.  ..+++++.++|+|   ||++++....
T Consensus       180 ~~~D~V~~-----~~~~~--~~~l~~~~~~L~p---gG~l~~~~~~  215 (277)
T 1o54_A          180 KDVDALFL-----DVPDP--WNYIDKCWEALKG---GGRFATVCPT  215 (277)
T ss_dssp             CSEEEEEE-----CCSCG--GGTHHHHHHHEEE---EEEEEEEESS
T ss_pred             CccCEEEE-----CCcCH--HHHHHHHHHHcCC---CCEEEEEeCC
Confidence             5999987     34432  3789999999999   8999888753

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.15  E-value=7.8e-11  Score=98.86  Aligned_cols=97  Identities=19%  Similarity=0.299  Sum_probs=77.6

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCCCC--CCccEEeehhhhc
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFKAI--SPAYAVLLKWILL  184 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~~~--~~~D~~~~~~vlh  184 (259)
                      ..+..+|||+|||+|.++..+++..+  +++++|+ |.+++.+++    ..-.+++..+|+.++.  ..||+|++....|
T Consensus       118 ~~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~~~~fD~Vv~n~~~~  195 (254)
T 2nxc_A          118 LRPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAE  195 (254)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHH
T ss_pred             cCCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCcCCCCCEEEECCcHH
Confidence            35568999999999999999998765  9999999 888888876    1212899999988744  3599999865443


Q ss_pred             cCChHHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 041250          185 DWNDEECVKILKKCKEAITRDGKKRKVIIKDMIK  218 (259)
Q Consensus       185 ~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~  218 (259)
                           ....+++++.+.|+|   ||++++.+...
T Consensus       196 -----~~~~~l~~~~~~Lkp---gG~lils~~~~  221 (254)
T 2nxc_A          196 -----LHAALAPRYREALVP---GGRALLTGILK  221 (254)
T ss_dssp             -----HHHHHHHHHHHHEEE---EEEEEEEEEEG
T ss_pred             -----HHHHHHHHHHHHcCC---CCEEEEEeecc
Confidence                 356899999999999   89998877654

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.14  E-value=1.5e-10  Score=95.11  Aligned_cols=96  Identities=8%  Similarity=0.132  Sum_probs=76.8

Q ss_pred             CeEEEecCCchHHHHHHHHHCC-CCeEEEeec-hHHHhhccc------CC-CCeEEEeCCCCC---CC-C-CccEEeehh
Q 041250          116 NSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES------DL-VNLKYVGGDMFK---AI-S-PAYAVLLKW  181 (259)
Q Consensus       116 ~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~-~ri~~~~~d~~~---~~-~-~~D~~~~~~  181 (259)
                      .+|||||||+|..+..+++..| +.+++++|+ +.+++.|++      .. +|++++.+|..+   .. + .||+|++..
T Consensus        58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d~  137 (221)
T 3dr5_A           58 TGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQV  137 (221)
T ss_dssp             CEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEECC
T ss_pred             CCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEcC
Confidence            3999999999999999999875 889999999 888888876      23 689999999876   23 2 599998764


Q ss_pred             hhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250          182 ILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKE  219 (259)
Q Consensus       182 vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~  219 (259)
                      ..     .....+++++.+.|+|   ||.|++.+....
T Consensus       138 ~~-----~~~~~~l~~~~~~Lkp---GG~lv~dn~~~~  167 (221)
T 3dr5_A          138 SP-----MDLKALVDAAWPLLRR---GGALVLADALLD  167 (221)
T ss_dssp             CT-----TTHHHHHHHHHHHEEE---EEEEEETTTTGG
T ss_pred             cH-----HHHHHHHHHHHHHcCC---CcEEEEeCCCCC
Confidence            32     2345689999999999   887777665543

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.14  E-value=4.9e-11  Score=96.87  Aligned_cols=98  Identities=14%  Similarity=0.137  Sum_probs=78.4

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC--CC-CCccEEeehh
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK--AI-SPAYAVLLKW  181 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~--~~-~~~D~~~~~~  181 (259)
                      .+..+|||||||+|..+..+++..| +.+++++|+ +.+++.+++      ..++++++.+|..+  +. ++||+|++..
T Consensus        55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~  134 (210)
T 3c3p_A           55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRDIDILFMDC  134 (210)
T ss_dssp             HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCSEEEEEEET
T ss_pred             hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCCCCEEEEcC
Confidence            4567999999999999999999988 889999999 888888876      34689999999876  22 1399998763


Q ss_pred             hhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 041250          182 ILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIK  218 (259)
Q Consensus       182 vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~  218 (259)
                      .     ......+++++.+.|+|   ||.+++.+...
T Consensus       135 ~-----~~~~~~~l~~~~~~Lkp---gG~lv~~~~~~  163 (210)
T 3c3p_A          135 D-----VFNGADVLERMNRCLAK---NALLIAVNALR  163 (210)
T ss_dssp             T-----TSCHHHHHHHHGGGEEE---EEEEEEESSSS
T ss_pred             C-----hhhhHHHHHHHHHhcCC---CeEEEEECccc
Confidence            2     22346799999999999   88887766543

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.13  E-value=2.6e-11  Score=99.80  Aligned_cols=87  Identities=9%  Similarity=0.148  Sum_probs=73.8

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCC--CCC---CccEEeehhhhccC
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK--AIS---PAYAVLLKWILLDW  186 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~--~~~---~~D~~~~~~vlh~~  186 (259)
                      ....+|||||||+|.++..+++.  +.+++++|+ +.+++.+++..++++++.+|+.+  +.+   .||+|+++.     
T Consensus        47 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~-----  119 (226)
T 3m33_A           47 TPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSRR-----  119 (226)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEES-----
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeCC-----
Confidence            45689999999999999999998  579999999 89999988767789999999976  433   499998871     


Q ss_pred             ChHHHHHHHHHHHHhcccCCCCcEEE
Q 041250          187 NDEECVKILKKCKEAITRDGKKRKVI  212 (259)
Q Consensus       187 ~d~~~~~il~~~~~~L~p~~~gg~ll  212 (259)
                         +...+++++++.|+|   ||+++
T Consensus       120 ---~~~~~l~~~~~~Lkp---gG~l~  139 (226)
T 3m33_A          120 ---GPTSVILRLPELAAP---DAHFL  139 (226)
T ss_dssp             ---CCSGGGGGHHHHEEE---EEEEE
T ss_pred             ---CHHHHHHHHHHHcCC---CcEEE
Confidence               134689999999999   89887

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.13  E-value=1.1e-10  Score=99.14  Aligned_cols=96  Identities=13%  Similarity=0.047  Sum_probs=79.3

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCC-CC-CccEEeehhhh
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKA-IS-PAYAVLLKWIL  183 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~-~~-~~D~~~~~~vl  183 (259)
                      .+..+|||+|||+|.++..+++..+. +++++|+ |.+++.+++      ..++++++.+|+++. .. .||+|++....
T Consensus       124 ~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p~  202 (278)
T 2frn_A          124 KPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVV  202 (278)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCS
T ss_pred             CCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCch
Confidence            44689999999999999999999876 8999999 888988876      345799999999983 33 59999885331


Q ss_pred             ccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 041250          184 LDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIK  218 (259)
Q Consensus       184 h~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~  218 (259)
                            ....+++++.+.|+|   ||.+++.+...
T Consensus       203 ------~~~~~l~~~~~~Lkp---gG~l~~~~~~~  228 (278)
T 2frn_A          203 ------RTHEFIPKALSIAKD---GAIIHYHNTVP  228 (278)
T ss_dssp             ------SGGGGHHHHHHHEEE---EEEEEEEEEEE
T ss_pred             ------hHHHHHHHHHHHCCC---CeEEEEEEeec
Confidence                  124689999999999   99999988875

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.13  E-value=5e-11  Score=93.99  Aligned_cols=98  Identities=10%  Similarity=0.029  Sum_probs=75.8

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCC---C-CCccEEeehh
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKA---I-SPAYAVLLKW  181 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~---~-~~~D~~~~~~  181 (259)
                      ....+|||+|||+|.++..+++. +..+++++|+ +.+++.+++      ..++++++.+|+.+.   . ..||+|++..
T Consensus        30 ~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~  108 (177)
T 2esr_A           30 FNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP  108 (177)
T ss_dssp             CCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred             cCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECC
Confidence            35679999999999999999987 6679999999 888888876      225899999999772   2 2599999886


Q ss_pred             hhccCChHHHHHHHHHHH--HhcccCCCCcEEEEEeee
Q 041250          182 ILLDWNDEECVKILKKCK--EAITRDGKKRKVIIKDMI  217 (259)
Q Consensus       182 vlh~~~d~~~~~il~~~~--~~L~p~~~gg~lli~e~~  217 (259)
                      .+|.   .....+++.+.  +.|+|   ||.+++....
T Consensus       109 ~~~~---~~~~~~~~~l~~~~~L~~---gG~l~~~~~~  140 (177)
T 2esr_A          109 PYAK---ETIVATIEALAAKNLLSE---QVMVVCETDK  140 (177)
T ss_dssp             SSHH---HHHHHHHHHHHHTTCEEE---EEEEEEEEET
T ss_pred             CCCc---chHHHHHHHHHhCCCcCC---CcEEEEEECC
Confidence            6542   22345666666  89999   8887776543

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.13  E-value=1.6e-10  Score=96.02  Aligned_cols=97  Identities=9%  Similarity=0.061  Sum_probs=79.7

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCCCC---CccEEeehh
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAIS---PAYAVLLKW  181 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~---~~D~~~~~~  181 (259)
                      .++..+|+|||||+|.+++.+++..|..+++++|+ |.+++.|++      ..++|++..+|.++..+   .||+|++..
T Consensus        19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviag   98 (244)
T 3gnl_A           19 ITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAG   98 (244)
T ss_dssp             CCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred             CCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeC
Confidence            34567999999999999999999999889999999 888888887      45789999999999443   399988764


Q ss_pred             hhccCChHHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250          182 ILLDWNDEECVKILKKCKEAITRDGKKRKVIIKD  215 (259)
Q Consensus       182 vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e  215 (259)
                          ...+....||....+.|++   ++++++.-
T Consensus        99 ----mGg~lI~~IL~~~~~~L~~---~~~lIlq~  125 (244)
T 3gnl_A           99 ----MGGTLIRTILEEGAAKLAG---VTKLILQP  125 (244)
T ss_dssp             ----ECHHHHHHHHHHTGGGGTT---CCEEEEEE
T ss_pred             ----CchHHHHHHHHHHHHHhCC---CCEEEEEc
Confidence                3335567889999999988   77776664

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.12  E-value=1.6e-10  Score=96.55  Aligned_cols=100  Identities=10%  Similarity=0.066  Sum_probs=80.2

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC--C-C-------CC
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK--A-I-------SP  173 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~--~-~-------~~  173 (259)
                      ..+..+|||||||+|..+..+++..| +.+++++|+ +.+++.|++      ..++|+++.+|..+  + .       ..
T Consensus        77 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~  156 (247)
T 1sui_A           77 LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS  156 (247)
T ss_dssp             HTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTC
T ss_pred             hhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCC
Confidence            34568999999999999999999988 789999999 888888876      33689999999875  2 2       35


Q ss_pred             ccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250          174 AYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKE  219 (259)
Q Consensus       174 ~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~  219 (259)
                      ||+|++...     ......+++++.+.|+|   ||.|++.+...+
T Consensus       157 fD~V~~d~~-----~~~~~~~l~~~~~~Lkp---GG~lv~d~~~~~  194 (247)
T 1sui_A          157 YDFIFVDAD-----KDNYLNYHKRLIDLVKV---GGVIGYDNTLWN  194 (247)
T ss_dssp             BSEEEECSC-----STTHHHHHHHHHHHBCT---TCCEEEECTTGG
T ss_pred             EEEEEEcCc-----hHHHHHHHHHHHHhCCC---CeEEEEecCCcC
Confidence            999988643     22356789999999999   898877665443

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.12  E-value=2.3e-10  Score=100.57  Aligned_cols=110  Identities=14%  Similarity=0.077  Sum_probs=85.3

Q ss_pred             HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-CCC-
Q 041250          102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AIS-  172 (259)
Q Consensus       102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~~~-  172 (259)
                      ..++....  +.+..+|||+|||+|.++++++... |+.+++++|+ +.+++.|++     ..++++++.+|+.+ +.+ 
T Consensus       193 ~~l~~~~~--~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~  270 (354)
T 3tma_A          193 QALLRLAD--ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFF  270 (354)
T ss_dssp             HHHHHHTT--CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTC
T ss_pred             HHHHHHhC--CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCcccc
Confidence            44455555  5667899999999999999999988 8899999999 899988886     22389999999998 433 


Q ss_pred             -CccEEeehhhhccC-C-hHH----HHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          173 -PAYAVLLKWILLDW-N-DEE----CVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       173 -~~D~~~~~~vlh~~-~-d~~----~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                       .+|+|++....+.. . ..+    -..+++++.+.|+|   ||++++...
T Consensus       271 ~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~Lkp---gG~l~i~t~  318 (354)
T 3tma_A          271 PEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPP---GGRVALLTL  318 (354)
T ss_dssp             CCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCT---TCEEEEEES
T ss_pred             CCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCC---CcEEEEEeC
Confidence             58999986544321 1 111    25789999999999   999988754

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.12  E-value=9.3e-11  Score=97.25  Aligned_cols=100  Identities=15%  Similarity=0.176  Sum_probs=80.1

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC--C-C---------
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK--A-I---------  171 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~--~-~---------  171 (259)
                      ..+..+|||||||+|..+..+++..| ..+++++|+ +.+++.+++      ...+++++.+|..+  + .         
T Consensus        58 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~  137 (239)
T 2hnk_A           58 ISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSW  137 (239)
T ss_dssp             HHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGG
T ss_pred             hhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccc
Confidence            45578999999999999999999987 689999999 888888876      23569999999865  2 1         


Q ss_pred             --------CCccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250          172 --------SPAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKE  219 (259)
Q Consensus       172 --------~~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~  219 (259)
                              ..||+|++...     .+....+++++.+.|+|   ||.+++.+...+
T Consensus       138 ~~~f~~~~~~fD~I~~~~~-----~~~~~~~l~~~~~~L~p---gG~lv~~~~~~~  185 (239)
T 2hnk_A          138 ASDFAFGPSSIDLFFLDAD-----KENYPNYYPLILKLLKP---GGLLIADNVLWD  185 (239)
T ss_dssp             GTTTCCSTTCEEEEEECSC-----GGGHHHHHHHHHHHEEE---EEEEEEECSSGG
T ss_pred             cccccCCCCCcCEEEEeCC-----HHHHHHHHHHHHHHcCC---CeEEEEEccccC
Confidence                    45999988743     33345789999999999   898888765443

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.12  E-value=1.3e-10  Score=95.41  Aligned_cols=100  Identities=12%  Similarity=0.134  Sum_probs=80.7

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCC---C------CCc
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKA---I------SPA  174 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~---~------~~~  174 (259)
                      ..+..+|||||||+|..+..+++..| +.+++++|+ +.+++.+++      ..++++++.+|+.+.   .      ..|
T Consensus        67 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~  146 (229)
T 2avd_A           67 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF  146 (229)
T ss_dssp             HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred             hcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCc
Confidence            45678999999999999999999987 789999999 888888876      247999999998652   1      459


Q ss_pred             cEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250          175 YAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKE  219 (259)
Q Consensus       175 D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~  219 (259)
                      |+|++...     ......+++++.+.|+|   ||.+++.+....
T Consensus       147 D~v~~d~~-----~~~~~~~l~~~~~~L~p---gG~lv~~~~~~~  183 (229)
T 2avd_A          147 DVAVVDAD-----KENCSAYYERCLQLLRP---GGILAVLRVLWR  183 (229)
T ss_dssp             EEEEECSC-----STTHHHHHHHHHHHEEE---EEEEEEECCSGG
T ss_pred             cEEEECCC-----HHHHHHHHHHHHHHcCC---CeEEEEECCCcC
Confidence            99988532     33356789999999999   888888776543

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=99.11  E-value=1.3e-10  Score=91.70  Aligned_cols=86  Identities=8%  Similarity=-0.003  Sum_probs=70.9

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-CCCCeEEEeCCCCC-CC---C--CccEEeehhhh
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-DLVNLKYVGGDMFK-AI---S--PAYAVLLKWIL  183 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri~~~~~d~~~-~~---~--~~D~~~~~~vl  183 (259)
                      .....+|||||||.                +.+|+ +.+++.|++ ...+++++.+|+.+ +.   +  .||+|++.+++
T Consensus        10 ~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l   73 (176)
T 2ld4_A           10 ISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVP   73 (176)
T ss_dssp             CCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCST
T ss_pred             CCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChh
Confidence            56678999999996                23888 889998887 44569999999987 44   4  49999999999


Q ss_pred             ccC-ChHHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 041250          184 LDW-NDEECVKILKKCKEAITRDGKKRKVIIKDMIK  218 (259)
Q Consensus       184 h~~-~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~  218 (259)
                      |++ ++.  .++|++++++|+|   ||++++.++..
T Consensus        74 ~~~~~~~--~~~l~~~~r~Lkp---gG~l~~~~~~~  104 (176)
T 2ld4_A           74 GSTTLHS--AEILAEIARILRP---GGCLFLKEPVE  104 (176)
T ss_dssp             TCCCCCC--HHHHHHHHHHEEE---EEEEEEEEEEE
T ss_pred             hhcccCH--HHHHHHHHHHCCC---CEEEEEEcccc
Confidence            998 654  5899999999999   99999976654

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.11  E-value=8.8e-11  Score=94.99  Aligned_cols=97  Identities=12%  Similarity=0.107  Sum_probs=75.6

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CC--CCeEEEeCCCCC--CC---CC-ccEEee
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DL--VNLKYVGGDMFK--AI---SP-AYAVLL  179 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~--~ri~~~~~d~~~--~~---~~-~D~~~~  179 (259)
                      ...+|||+|||+|.++..++++.. .+++++|+ +.+++.|++     ..  ++++++.+|+.+  +.   .. ||+|++
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  131 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL  131 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred             CCCeEEEcCCccCHHHHHHHHccC-CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence            357999999999999999887743 58999999 899988876     22  699999999876  22   26 999999


Q ss_pred             hhhhccCChHHHHHHHHHH--HHhcccCCCCcEEEEEeee
Q 041250          180 KWILLDWNDEECVKILKKC--KEAITRDGKKRKVIIKDMI  217 (259)
Q Consensus       180 ~~vlh~~~d~~~~~il~~~--~~~L~p~~~gg~lli~e~~  217 (259)
                      ...+| ..  ....+++.+  .+.|+|   ||.+++....
T Consensus       132 ~~~~~-~~--~~~~~l~~~~~~~~Lkp---gG~l~i~~~~  165 (201)
T 2ift_A          132 DPPFH-FN--LAEQAISLLCENNWLKP---NALIYVETEK  165 (201)
T ss_dssp             CCCSS-SC--HHHHHHHHHHHTTCEEE---EEEEEEEEES
T ss_pred             CCCCC-Cc--cHHHHHHHHHhcCccCC---CcEEEEEECC
Confidence            87765 33  345778888  557999   8887776554

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.10  E-value=3e-10  Score=96.13  Aligned_cols=104  Identities=10%  Similarity=0.140  Sum_probs=83.5

Q ss_pred             HHHHHhcccccCCCCeEEEecCCchHHHHHHHHH-CCCCeEEEeec-hHHHhhccc----C----CCCeEEEeCCCCC-C
Q 041250          102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKA-FPKLECTCFDL-PHVVNGLES----D----LVNLKYVGGDMFK-A  170 (259)
Q Consensus       102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~----~----~~ri~~~~~d~~~-~  170 (259)
                      ..++..++  .....+|||+|||+|.++..+++. .|..+++++|+ +.+++.+++    .    .++++++.+|+.+ +
T Consensus        89 ~~i~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~  166 (280)
T 1i9g_A           89 AQIVHEGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE  166 (280)
T ss_dssp             HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC
T ss_pred             HHHHHHcC--CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcC
Confidence            34555666  667789999999999999999996 57889999999 888888776    2    4689999999987 4


Q ss_pred             CC--CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250          171 IS--PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI  217 (259)
Q Consensus       171 ~~--~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~  217 (259)
                      .+  .||+|++.     .++.  ..+++++.++|+|   ||++++..+.
T Consensus       167 ~~~~~~D~v~~~-----~~~~--~~~l~~~~~~L~p---gG~l~~~~~~  205 (280)
T 1i9g_A          167 LPDGSVDRAVLD-----MLAP--WEVLDAVSRLLVA---GGVLMVYVAT  205 (280)
T ss_dssp             CCTTCEEEEEEE-----SSCG--GGGHHHHHHHEEE---EEEEEEEESS
T ss_pred             CCCCceeEEEEC-----CcCH--HHHHHHHHHhCCC---CCEEEEEeCC
Confidence            43  59999872     3332  2689999999999   8999988753

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.10  E-value=4.6e-11  Score=99.48  Aligned_cols=101  Identities=15%  Similarity=0.057  Sum_probs=85.3

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCCCCC--CccEEeehhhhc
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFKAIS--PAYAVLLKWILL  184 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~~~~--~~D~~~~~~vlh  184 (259)
                      ...+.+|||||||.|-++..+....|+.+++++|+ +.+++.+++    ...+.++...|+....|  ++|++++.-++|
T Consensus       130 i~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~DvaL~lkti~  209 (281)
T 3lcv_B          130 LPRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLLLKTLP  209 (281)
T ss_dssp             SCCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEEEETTCHH
T ss_pred             cCCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcchHHHHHHHH
Confidence            35588999999999999999999999999999999 889988877    46678999999998433  599999999999


Q ss_pred             cCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          185 DWNDEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       185 ~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      ++.+++....+ ++.++|+|   +|.++-.+.
T Consensus       210 ~Le~q~kg~g~-~ll~aL~~---~~vvVSfp~  237 (281)
T 3lcv_B          210 CLETQQRGSGW-EVIDIVNS---PNIVVTFPT  237 (281)
T ss_dssp             HHHHHSTTHHH-HHHHHSSC---SEEEEEEEC
T ss_pred             HhhhhhhHHHH-HHHHHhCC---CCEEEeccc
Confidence            99887766677 89999999   554444443

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.09  E-value=5e-10  Score=91.85  Aligned_cols=94  Identities=15%  Similarity=0.135  Sum_probs=78.1

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHC-----CCCeEEEeec-hHHHhhccc-----C-----CCCeEEEeCCCCCCC----
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAF-----PKLECTCFDL-PHVVNGLES-----D-----LVNLKYVGGDMFKAI----  171 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~-----p~~~~~~~D~-~~~~~~a~~-----~-----~~ri~~~~~d~~~~~----  171 (259)
                      .....+|||||||+|.++..+++..     |+.+++++|+ +.+++.+++     .     .++++++.+|..+..    
T Consensus        78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  157 (227)
T 2pbf_A           78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK  157 (227)
T ss_dssp             SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence            4556799999999999999999986     6789999999 888888876     2     578999999998743    


Q ss_pred             C---CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          172 S---PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       172 ~---~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      +   .||+|++...+|+.        ++++.+.|+|   ||++++.-.
T Consensus       158 ~~~~~fD~I~~~~~~~~~--------~~~~~~~Lkp---gG~lv~~~~  194 (227)
T 2pbf_A          158 KELGLFDAIHVGASASEL--------PEILVDLLAE---NGKLIIPIE  194 (227)
T ss_dssp             HHHCCEEEEEECSBBSSC--------CHHHHHHEEE---EEEEEEEEE
T ss_pred             ccCCCcCEEEECCchHHH--------HHHHHHhcCC---CcEEEEEEc
Confidence            2   59999999888864        4678899999   898887754

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.08  E-value=3.2e-10  Score=94.10  Aligned_cols=98  Identities=11%  Similarity=0.094  Sum_probs=78.6

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC--C-C-------CC
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK--A-I-------SP  173 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~--~-~-------~~  173 (259)
                      ..+..+|||||||+|..+..+++..| +.+++++|+ +.+++.+++      ..++++++.+|..+  + .       ..
T Consensus        68 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~  147 (237)
T 3c3y_A           68 LVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGS  147 (237)
T ss_dssp             HTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTC
T ss_pred             hhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCC
Confidence            45678999999999999999999987 789999999 888888876      34589999999876  2 2       35


Q ss_pred             ccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250          174 AYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI  217 (259)
Q Consensus       174 ~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~  217 (259)
                      ||+|++..     +......+++++.+.|+|   ||.|++.+..
T Consensus       148 fD~I~~d~-----~~~~~~~~l~~~~~~L~p---GG~lv~d~~~  183 (237)
T 3c3y_A          148 YDFGFVDA-----DKPNYIKYHERLMKLVKV---GGIVAYDNTL  183 (237)
T ss_dssp             EEEEEECS-----CGGGHHHHHHHHHHHEEE---EEEEEEECTT
T ss_pred             cCEEEECC-----chHHHHHHHHHHHHhcCC---CeEEEEecCC
Confidence            99998753     233456899999999999   7877665543

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.07  E-value=7.4e-10  Score=91.82  Aligned_cols=101  Identities=14%  Similarity=0.116  Sum_probs=81.3

Q ss_pred             HHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCCC-C--
Q 041250          103 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAI-S--  172 (259)
Q Consensus       103 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~-~--  172 (259)
                      .++..++  .....+|||+|||+|.++..+++.  ..+++++|+ +.+++.+++      ..+++++..+|+.+.. +  
T Consensus        82 ~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~  157 (248)
T 2yvl_A           82 YIALKLN--LNKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEG  157 (248)
T ss_dssp             HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTT
T ss_pred             HHHHhcC--CCCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCC
Confidence            4555555  566789999999999999999998  679999998 888888876      2378999999999854 4  


Q ss_pred             CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250          173 PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI  217 (259)
Q Consensus       173 ~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~  217 (259)
                      +||+|++.     .++  ...+++++.+.|+|   ||++++....
T Consensus       158 ~~D~v~~~-----~~~--~~~~l~~~~~~L~~---gG~l~~~~~~  192 (248)
T 2yvl_A          158 IFHAAFVD-----VRE--PWHYLEKVHKSLME---GAPVGFLLPT  192 (248)
T ss_dssp             CBSEEEEC-----SSC--GGGGHHHHHHHBCT---TCEEEEEESS
T ss_pred             cccEEEEC-----CcC--HHHHHHHHHHHcCC---CCEEEEEeCC
Confidence            59999872     333  23679999999999   9999887753

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.07  E-value=1.3e-10  Score=98.72  Aligned_cols=99  Identities=14%  Similarity=0.076  Sum_probs=77.7

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-C--------CCCeEEEeCCCCC--CC-C-CccEEe
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-D--------LVNLKYVGGDMFK--AI-S-PAYAVL  178 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~--------~~ri~~~~~d~~~--~~-~-~~D~~~  178 (259)
                      .++.+|||||||+|.++.++++..|..+++++|+ |.+++.+++ .        .+|++++.+|.++  +. + .||+|+
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii  153 (275)
T 1iy9_A           74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM  153 (275)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred             CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence            3468999999999999999998777789999999 899998876 1        4799999999876  22 2 599999


Q ss_pred             ehhhhccCChHH--HHHHHHHHHHhcccCCCCcEEEEE
Q 041250          179 LKWILLDWNDEE--CVKILKKCKEAITRDGKKRKVIIK  214 (259)
Q Consensus       179 ~~~vlh~~~d~~--~~~il~~~~~~L~p~~~gg~lli~  214 (259)
                      +....+..+.+.  ...++++++++|+|   ||.+++.
T Consensus       154 ~d~~~~~~~~~~l~~~~~~~~~~~~L~p---gG~lv~~  188 (275)
T 1iy9_A          154 VDSTEPVGPAVNLFTKGFYAGIAKALKE---DGIFVAQ  188 (275)
T ss_dssp             ESCSSCCSCCCCCSTTHHHHHHHHHEEE---EEEEEEE
T ss_pred             ECCCCCCCcchhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence            865443332211  24789999999999   7877665

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.07  E-value=3.4e-10  Score=91.55  Aligned_cols=97  Identities=11%  Similarity=0.109  Sum_probs=74.6

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC--CCC--CccEEeehhhh
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK--AIS--PAYAVLLKWIL  183 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~--~~~--~~D~~~~~~vl  183 (259)
                      ...+|||+|||+|.++..++++.. .+++++|+ +.+++.+++     ..++++++.+|+.+  +.+  .||+|++...+
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~  132 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF  132 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCC
Confidence            357999999999999999888753 38999999 899988876     23699999999876  332  59999988775


Q ss_pred             ccCChHHHHHHHHHHHH--hcccCCCCcEEEEEeee
Q 041250          184 LDWNDEECVKILKKCKE--AITRDGKKRKVIIKDMI  217 (259)
Q Consensus       184 h~~~d~~~~~il~~~~~--~L~p~~~gg~lli~e~~  217 (259)
                      | +.+  ...+++.+.+  .|+|   ||.+++....
T Consensus       133 ~-~~~--~~~~l~~l~~~~~L~p---gG~l~i~~~~  162 (202)
T 2fpo_A          133 R-RGL--LEETINLLEDNGWLAD---EALIYVESEV  162 (202)
T ss_dssp             S-TTT--HHHHHHHHHHTTCEEE---EEEEEEEEEG
T ss_pred             C-CCc--HHHHHHHHHhcCccCC---CcEEEEEECC
Confidence            5 332  3467777766  4999   8887766543

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.06  E-value=5.6e-10  Score=89.68  Aligned_cols=104  Identities=11%  Similarity=0.262  Sum_probs=75.9

Q ss_pred             HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhcccCCCCeEEEeCCCCCCC----------
Q 041250          102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAI----------  171 (259)
Q Consensus       102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~~~----------  171 (259)
                      ..+.+.+. .+.+..+|||+|||+|.++..++++  ..+++++|+.++.     ..++++++.+|+.+..          
T Consensus        14 ~ei~~~~~-~~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~~-----~~~~v~~~~~D~~~~~~~~~~~~~~~   85 (191)
T 3dou_A           14 EFLLDRYR-VVRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEME-----EIAGVRFIRCDIFKETIFDDIDRALR   85 (191)
T ss_dssp             HHHHHHHC-CSCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCCC-----CCTTCEEEECCTTSSSHHHHHHHHHH
T ss_pred             HHHHHHcC-CCCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEeccccc-----cCCCeEEEEccccCHHHHHHHHHHhh
Confidence            44555555 2456789999999999999999988  7799999995431     3468999999998732          


Q ss_pred             ----CCccEEeehhhhcc---------CChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          172 ----SPAYAVLLKWILLD---------WNDEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       172 ----~~~D~~~~~~vlh~---------~~d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                          ..||+|++......         ...+.+..+++.+.+.|+|   ||.+++..+
T Consensus        86 ~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~Lkp---GG~lv~k~~  140 (191)
T 3dou_A           86 EEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRN---GGNVLLKQF  140 (191)
T ss_dssp             HHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred             cccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccC---CCEEEEEEc
Confidence                36999987532111         1112345789999999999   898876554

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.06  E-value=3.4e-10  Score=93.37  Aligned_cols=96  Identities=9%  Similarity=0.038  Sum_probs=80.5

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCC-CCC-CccEEeehhhhcc
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-AIS-PAYAVLLKWILLD  185 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~~~-~~D~~~~~~vlh~  185 (259)
                      ..+.+|||||||.|-++..+.   |..+++++|+ +.+++.+++    ...+.++...|+.. +.| .+|++++.-++|+
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLllk~lh~  180 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALIFKLLPL  180 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEEESCHHH
T ss_pred             CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHHHHHHHH
Confidence            557899999999999999988   8999999999 899998887    56889999999998 555 5999999999999


Q ss_pred             CChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          186 WNDEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       186 ~~d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      +.+++....+ ++.++|++   + +++|.-+
T Consensus       181 LE~q~~~~~~-~ll~aL~~---~-~vvVsfP  206 (253)
T 3frh_A          181 LEREQAGSAM-ALLQSLNT---P-RMAVSFP  206 (253)
T ss_dssp             HHHHSTTHHH-HHHHHCBC---S-EEEEEEE
T ss_pred             hhhhchhhHH-HHHHHhcC---C-CEEEEcC
Confidence            8777655555 88889998   4 4555544

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.06  E-value=3.2e-10  Score=93.22  Aligned_cols=93  Identities=17%  Similarity=0.189  Sum_probs=76.9

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCC------CCeEEEeec-hHHHhhccc-----C-----CCCeEEEeCCCCCCCC--
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFP------KLECTCFDL-PHVVNGLES-----D-----LVNLKYVGGDMFKAIS--  172 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p------~~~~~~~D~-~~~~~~a~~-----~-----~~ri~~~~~d~~~~~~--  172 (259)
                      .....+|||||||+|.++..+++..+      ..+++++|+ +.+++.+++     .     .++++++.+|..++++  
T Consensus        82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  161 (227)
T 1r18_A           82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPN  161 (227)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGG
T ss_pred             CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCcC
Confidence            45567999999999999999998765      368999998 888888876     1     5789999999987443  


Q ss_pred             -CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250          173 -PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKD  215 (259)
Q Consensus       173 -~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e  215 (259)
                       .||+|++...+|+..        +++.+.|+|   ||++++.-
T Consensus       162 ~~fD~I~~~~~~~~~~--------~~~~~~Lkp---gG~lvi~~  194 (227)
T 1r18_A          162 APYNAIHVGAAAPDTP--------TELINQLAS---GGRLIVPV  194 (227)
T ss_dssp             CSEEEEEECSCBSSCC--------HHHHHTEEE---EEEEEEEE
T ss_pred             CCccEEEECCchHHHH--------HHHHHHhcC---CCEEEEEE
Confidence             599999999988765        568889999   88887764

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.06  E-value=2.3e-10  Score=97.61  Aligned_cols=100  Identities=12%  Similarity=0.050  Sum_probs=79.4

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-C--------CCCeEEEeCCCCCC---CC-CccEEe
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-D--------LVNLKYVGGDMFKA---IS-PAYAVL  178 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~--------~~ri~~~~~d~~~~---~~-~~D~~~  178 (259)
                      +++.+|||||||+|..+..+++..|..+++++|+ |.+++.+++ .        .+|++++.+|..+.   .+ .||+|+
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  156 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII  156 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence            4568999999999999999998878889999999 889988876 1        47999999998762   23 599999


Q ss_pred             ehhhhccCChHHH--HHHHHHHHHhcccCCCCcEEEEEe
Q 041250          179 LKWILLDWNDEEC--VKILKKCKEAITRDGKKRKVIIKD  215 (259)
Q Consensus       179 ~~~vlh~~~d~~~--~~il~~~~~~L~p~~~gg~lli~e  215 (259)
                      +....+..+.+..  ..++++++++|+|   ||.+++..
T Consensus       157 ~d~~~~~~~~~~l~~~~~l~~~~~~L~p---gG~lv~~~  192 (283)
T 2i7c_A          157 VDSSDPIGPAETLFNQNFYEKIYNALKP---NGYCVAQC  192 (283)
T ss_dssp             EECCCTTTGGGGGSSHHHHHHHHHHEEE---EEEEEEEC
T ss_pred             EcCCCCCCcchhhhHHHHHHHHHHhcCC---CcEEEEEC
Confidence            8644333233222  5899999999999   88877663

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.06  E-value=2.2e-10  Score=99.06  Aligned_cols=100  Identities=13%  Similarity=0.098  Sum_probs=74.9

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-C--------CCCeEEEeCCCCCC----CCCccEEe
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-D--------LVNLKYVGGDMFKA----ISPAYAVL  178 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~--------~~ri~~~~~d~~~~----~~~~D~~~  178 (259)
                      .++.+|||||||+|..+..+++..|..+++++|+ +.+++.|++ .        .+|++++.+|..+.    ...||+|+
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  186 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII  186 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence            4567999999999999999999888889999999 899988876 1        47899999998762    22599999


Q ss_pred             ehhhhccCChHHH--HHHHHHHHHhcccCCCCcEEEEEe
Q 041250          179 LKWILLDWNDEEC--VKILKKCKEAITRDGKKRKVIIKD  215 (259)
Q Consensus       179 ~~~vlh~~~d~~~--~~il~~~~~~L~p~~~gg~lli~e  215 (259)
                      +...-|..+++..  ..++++++++|+|   ||.+++..
T Consensus       187 ~d~~~~~~~~~~l~t~~~l~~~~~~Lkp---gG~lv~~~  222 (314)
T 2b2c_A          187 TDSSDPVGPAESLFGQSYYELLRDALKE---DGILSSQG  222 (314)
T ss_dssp             ECCC-------------HHHHHHHHEEE---EEEEEEEC
T ss_pred             EcCCCCCCcchhhhHHHHHHHHHhhcCC---CeEEEEEC
Confidence            8554332222222  6899999999999   78777654

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.05  E-value=3e-10  Score=96.23  Aligned_cols=101  Identities=18%  Similarity=0.147  Sum_probs=83.3

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCC-CC-CccEEeehhhh
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKA-IS-PAYAVLLKWIL  183 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~-~~-~~D~~~~~~vl  183 (259)
                      +.+..+|||+|||+|.++..+++..+..+++++|+ |.+++.+++     ...++.++.+|+.+. .+ .||+|++....
T Consensus       117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~d~p~  196 (272)
T 3a27_A          117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIMGYVH  196 (272)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEECCCS
T ss_pred             cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEECCcc
Confidence            45668999999999999999999998889999999 899988876     346899999999874 32 59999887543


Q ss_pred             ccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCC
Q 041250          184 LDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENR  221 (259)
Q Consensus       184 h~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~  221 (259)
                            ...++++++.+.|+|   ||.+++......+.
T Consensus       197 ------~~~~~l~~~~~~Lkp---gG~l~~s~~~~~~~  225 (272)
T 3a27_A          197 ------KTHKFLDKTFEFLKD---RGVIHYHETVAEKI  225 (272)
T ss_dssp             ------SGGGGHHHHHHHEEE---EEEEEEEEEEEGGG
T ss_pred             ------cHHHHHHHHHHHcCC---CCEEEEEEcCcccc
Confidence                  234689999999999   89998888776543

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.05  E-value=7.4e-10  Score=95.82  Aligned_cols=109  Identities=10%  Similarity=0.102  Sum_probs=82.7

Q ss_pred             HHhcccccCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-C-CC-Cc
Q 041250          105 IQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-A-IS-PA  174 (259)
Q Consensus       105 ~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~-~~-~~  174 (259)
                      ...++  .....+|||+|||+|..+..+++..+ +.+++++|+ +.+++.+++     ...+++++.+|+.+ + .+ .|
T Consensus       111 ~~~l~--~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~f  188 (315)
T 1ixk_A          111 PVALD--PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEF  188 (315)
T ss_dssp             HHHHC--CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCE
T ss_pred             HHHhC--CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccC
Confidence            34445  56678999999999999999999875 579999999 788887776     34589999999987 3 23 59


Q ss_pred             cEEeeh------hhhcc-------CChHH-------HHHHHHHHHHhcccCCCCcEEEEEeeee
Q 041250          175 YAVLLK------WILLD-------WNDEE-------CVKILKKCKEAITRDGKKRKVIIKDMIK  218 (259)
Q Consensus       175 D~~~~~------~vlh~-------~~d~~-------~~~il~~~~~~L~p~~~gg~lli~e~~~  218 (259)
                      |+|++.      .+++.       |+.++       ..++|+++.+.|+|   ||++++.....
T Consensus       189 D~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~Lkp---GG~lv~stcs~  249 (315)
T 1ixk_A          189 DKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKP---GGILVYSTCSL  249 (315)
T ss_dssp             EEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEESCC
T ss_pred             CEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCC---CCEEEEEeCCC
Confidence            999973      22332       33322       25899999999999   89988876544

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.05  E-value=2e-10  Score=94.94  Aligned_cols=100  Identities=12%  Similarity=0.158  Sum_probs=79.9

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC--C-C------CCc
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK--A-I------SPA  174 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~--~-~------~~~  174 (259)
                      ..+..+|||||||+|..+..+++..| +.+++++|+ +.+++.|++      ..++++++.+|..+  + .      ..|
T Consensus        70 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~f  149 (232)
T 3cbg_A           70 LTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEF  149 (232)
T ss_dssp             HHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCE
T ss_pred             hcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCc
Confidence            34567999999999999999999987 789999999 888888876      33689999999754  1 1      459


Q ss_pred             cEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250          175 YAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKE  219 (259)
Q Consensus       175 D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~  219 (259)
                      |+|++...     ......+++++.+.|+|   ||.|++.+...+
T Consensus       150 D~V~~d~~-----~~~~~~~l~~~~~~Lkp---gG~lv~~~~~~~  186 (232)
T 3cbg_A          150 DLIFIDAD-----KRNYPRYYEIGLNLLRR---GGLMVIDNVLWH  186 (232)
T ss_dssp             EEEEECSC-----GGGHHHHHHHHHHTEEE---EEEEEEECTTGG
T ss_pred             CEEEECCC-----HHHHHHHHHHHHHHcCC---CeEEEEeCCCcC
Confidence            99987643     23456789999999999   888887766554

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.05  E-value=2.5e-10  Score=99.06  Aligned_cols=99  Identities=12%  Similarity=0.084  Sum_probs=77.2

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---C------CCCeEEEeCCCCCC---CC-CccEEe
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---D------LVNLKYVGGDMFKA---IS-PAYAVL  178 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~------~~ri~~~~~d~~~~---~~-~~D~~~  178 (259)
                      +++.+|||||||+|.++.++++..|..+++++|+ |.+++.+++   .      .+|++++.+|..+.   .+ .||+|+
T Consensus       115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi  194 (321)
T 2pt6_A          115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII  194 (321)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred             CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence            3467999999999999999998878889999999 899988876   1      46899999998762   22 599999


Q ss_pred             ehhhhccCChHHH--HHHHHHHHHhcccCCCCcEEEEE
Q 041250          179 LKWILLDWNDEEC--VKILKKCKEAITRDGKKRKVIIK  214 (259)
Q Consensus       179 ~~~vlh~~~d~~~--~~il~~~~~~L~p~~~gg~lli~  214 (259)
                      +...-+..+.+..  .++++++++.|+|   ||.+++.
T Consensus       195 ~d~~~p~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~  229 (321)
T 2pt6_A          195 VDSSDPIGPAETLFNQNFYEKIYNALKP---NGYCVAQ  229 (321)
T ss_dssp             EECCCSSSGGGGGSSHHHHHHHHHHEEE---EEEEEEE
T ss_pred             ECCcCCCCcchhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence            7643221122211  5899999999999   7877765

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.05  E-value=7.7e-10  Score=90.64  Aligned_cols=94  Identities=15%  Similarity=0.111  Sum_probs=76.7

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeec-hHHHhhccc---C-------CCCeEEEeCCCCCCC---CCccE
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES---D-------LVNLKYVGGDMFKAI---SPAYA  176 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~---~-------~~ri~~~~~d~~~~~---~~~D~  176 (259)
                      .....+|||||||+|..+..+++.. |+.+++++|+ +.+++.+++   .       .++++++.+|.....   ..||+
T Consensus        75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  154 (226)
T 1i1n_A           75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA  154 (226)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence            4456799999999999999999885 7789999999 888888775   1       468999999998632   25999


Q ss_pred             EeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          177 VLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       177 ~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      |++...++++.        +++.+.|+|   ||++++...
T Consensus       155 i~~~~~~~~~~--------~~~~~~Lkp---gG~lv~~~~  183 (226)
T 1i1n_A          155 IHVGAAAPVVP--------QALIDQLKP---GGRLILPVG  183 (226)
T ss_dssp             EEECSBBSSCC--------HHHHHTEEE---EEEEEEEES
T ss_pred             EEECCchHHHH--------HHHHHhcCC---CcEEEEEEe
Confidence            99998887654        578899999   898888654

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.04  E-value=2.3e-10  Score=99.03  Aligned_cols=101  Identities=13%  Similarity=0.045  Sum_probs=80.3

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-C---------CCCeEEEeCCCCC--C-CC-CccEE
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-D---------LVNLKYVGGDMFK--A-IS-PAYAV  177 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~---------~~ri~~~~~d~~~--~-~~-~~D~~  177 (259)
                      +++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .         .+|++++.+|..+  + .+ .||+|
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I  155 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV  155 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence            4568999999999999999999878889999999 888888876 1         4799999999976  2 22 59999


Q ss_pred             eehhhhcc---CChHH--HHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          178 LLKWILLD---WNDEE--CVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       178 ~~~~vlh~---~~d~~--~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      ++....|.   -+.+.  ..+++++++++|+|   ||.+++...
T Consensus       156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~~~  196 (314)
T 1uir_A          156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNP---GGVMGMQTG  196 (314)
T ss_dssp             EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred             EECCCCcccccCcchhccHHHHHHHHHHhcCC---CcEEEEEcc
Confidence            99766554   21111  25789999999999   888877643

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.04  E-value=6e-10  Score=94.10  Aligned_cols=98  Identities=16%  Similarity=0.104  Sum_probs=71.8

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhccc-CC------CCeEEE--eCCCCC-CCCCccEEeehh
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES-DL------VNLKYV--GGDMFK-AISPAYAVLLKW  181 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-~~------~ri~~~--~~d~~~-~~~~~D~~~~~~  181 (259)
                      +.+..+|||||||+|.++..+++.   .+++++|+.+++..+++ ..      .++.++  .+|+.+ +...||+|++..
T Consensus        72 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~V~sd~  148 (265)
T 2oxt_A           72 VELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLPVERTDVIMCDV  148 (265)
T ss_dssp             CCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCCCCCCcEEEEeC
Confidence            456679999999999999999887   58999999556444432 11      278999  999987 433699999876


Q ss_pred             hhccCCh---H-H-HHHHHHHHHHhcccCCCCc--EEEEEee
Q 041250          182 ILLDWND---E-E-CVKILKKCKEAITRDGKKR--KVIIKDM  216 (259)
Q Consensus       182 vlh~~~d---~-~-~~~il~~~~~~L~p~~~gg--~lli~e~  216 (259)
                      . |..++   + . ...+|+.+.++|+|   ||  .+++-.+
T Consensus       149 ~-~~~~~~~~d~~~~l~~L~~~~r~Lkp---GG~~~fv~kv~  186 (265)
T 2oxt_A          149 G-ESSPKWSVESERTIKILELLEKWKVK---NPSADFVVKVL  186 (265)
T ss_dssp             C-CCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCEEEEEES
T ss_pred             c-ccCCccchhHHHHHHHHHHHHHHhcc---CCCeEEEEEeC
Confidence            6 43322   1 1 22489999999999   89  8777544

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.04  E-value=2.4e-10  Score=97.33  Aligned_cols=99  Identities=11%  Similarity=0.073  Sum_probs=76.1

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-C--------------CCCeEEEeCCCCCC---CCC
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-D--------------LVNLKYVGGDMFKA---ISP  173 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~--------------~~ri~~~~~d~~~~---~~~  173 (259)
                      .++.+|||||||+|.++..+++. |..+++++|+ |.+++.|++ .              .+|++++.+|..+.   ...
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~  152 (281)
T 1mjf_A           74 PKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG  152 (281)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcccCC
Confidence            34679999999999999999998 8889999999 888888775 2              46899999998652   235


Q ss_pred             ccEEeehhhhccCChHH--HHHHHHHHHHhcccCCCCcEEEEEe
Q 041250          174 AYAVLLKWILLDWNDEE--CVKILKKCKEAITRDGKKRKVIIKD  215 (259)
Q Consensus       174 ~D~~~~~~vlh~~~d~~--~~~il~~~~~~L~p~~~gg~lli~e  215 (259)
                      ||+|++....+..+.+.  ...+++++++.|+|   ||.+++..
T Consensus       153 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~p---gG~lv~~~  193 (281)
T 1mjf_A          153 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNN---PGIYVTQA  193 (281)
T ss_dssp             EEEEEEECCCCC-----TTSHHHHHHHHHHEEE---EEEEEEEE
T ss_pred             eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCC---CcEEEEEc
Confidence            99999865543322222  25789999999999   78776653

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.04  E-value=1.8e-10  Score=99.23  Aligned_cols=100  Identities=13%  Similarity=0.079  Sum_probs=76.4

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---C------CCCeEEEeCCCCC--CC-C-CccEEe
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---D------LVNLKYVGGDMFK--AI-S-PAYAVL  178 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~------~~ri~~~~~d~~~--~~-~-~~D~~~  178 (259)
                      .+..+|||||||+|..+..+++..|..+++++|+ +.+++.|++   .      .+|++++.+|..+  +. + .||+|+
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii  173 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence            4568999999999999999999888889999999 889888876   1      5799999999876  22 2 599999


Q ss_pred             ehhhhccCChH--HHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250          179 LKWILLDWNDE--ECVKILKKCKEAITRDGKKRKVIIKD  215 (259)
Q Consensus       179 ~~~vlh~~~d~--~~~~il~~~~~~L~p~~~gg~lli~e  215 (259)
                      +....+..+..  ....++++++++|+|   ||.+++..
T Consensus       174 ~d~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~~  209 (304)
T 2o07_A          174 TDSSDPMGPAESLFKESYYQLMKTALKE---DGVLCCQG  209 (304)
T ss_dssp             EECC-----------CHHHHHHHHHEEE---EEEEEEEE
T ss_pred             ECCCCCCCcchhhhHHHHHHHHHhccCC---CeEEEEec
Confidence            86544332221  134689999999999   88777654

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.04  E-value=1.4e-09  Score=92.58  Aligned_cols=99  Identities=18%  Similarity=0.192  Sum_probs=74.5

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec--hHHHhhcccCC---------------CCeEEEeCCCCCC---C
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL--PHVVNGLESDL---------------VNLKYVGGDMFKA---I  171 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a~~~~---------------~ri~~~~~d~~~~---~  171 (259)
                      .....+|||||||+|.++..+++.. ..+++++|+  +.+++.+++..               +++++...|..+.   .
T Consensus        77 ~~~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  155 (281)
T 3bzb_A           77 LIAGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSL  155 (281)
T ss_dssp             GTTTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHH
T ss_pred             hcCCCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHH
Confidence            3456799999999999999888863 348999999  57887766511               4788886665431   1


Q ss_pred             ------CCccEEeehhhhccCChHHHHHHHHHHHHhcc---cCCCCcEEEEE
Q 041250          172 ------SPAYAVLLKWILLDWNDEECVKILKKCKEAIT---RDGKKRKVIIK  214 (259)
Q Consensus       172 ------~~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~---p~~~gg~lli~  214 (259)
                            ..||+|++..++|+.++  ...+++.+.+.|+   | ++||+++++
T Consensus       156 ~~~~~~~~fD~Ii~~dvl~~~~~--~~~ll~~l~~~Lk~~~p-~~gG~l~v~  204 (281)
T 3bzb_A          156 QRCTGLQRFQVVLLADLLSFHQA--HDALLRSVKMLLALPAN-DPTAVALVT  204 (281)
T ss_dssp             HHHHSCSSBSEEEEESCCSCGGG--HHHHHHHHHHHBCCTTT-CTTCEEEEE
T ss_pred             HhhccCCCCCEEEEeCcccChHH--HHHHHHHHHHHhcccCC-CCCCEEEEE
Confidence                  25999999999987554  4689999999999   6 236876654

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=99.03  E-value=5.4e-10  Score=94.89  Aligned_cols=98  Identities=16%  Similarity=0.042  Sum_probs=71.9

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhccc-CC------CCeEEE--eCCCCC-CCCCccEEeehh
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES-DL------VNLKYV--GGDMFK-AISPAYAVLLKW  181 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-~~------~ri~~~--~~d~~~-~~~~~D~~~~~~  181 (259)
                      +.+..+|||+|||+|.++..++++   .+++++|+.+++..+++ ..      .++.++  .+|+.+ +...||+|++..
T Consensus        80 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~Vvsd~  156 (276)
T 2wa2_A           80 VELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKMEPFQADTVLCDI  156 (276)
T ss_dssp             CCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCCCCCCSEEEECC
T ss_pred             CCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCCCCCcCEEEECC
Confidence            456679999999999999999887   58999999556544432 11      278999  999987 433699999876


Q ss_pred             hhccCCh----HH-HHHHHHHHHHhcccCCCCc--EEEEEee
Q 041250          182 ILLDWND----EE-CVKILKKCKEAITRDGKKR--KVIIKDM  216 (259)
Q Consensus       182 vlh~~~d----~~-~~~il~~~~~~L~p~~~gg--~lli~e~  216 (259)
                      . +..+.    .. ..++|+.+.+.|+|   ||  .+++..+
T Consensus       157 ~-~~~~~~~~d~~~~l~~L~~~~r~Lkp---GG~~~~v~~~~  194 (276)
T 2wa2_A          157 G-ESNPTAAVEASRTLTVLNVISRWLEY---NQGCGFCVKVL  194 (276)
T ss_dssp             C-CCCSCHHHHHHHHHHHHHHHHHHHHH---STTCEEEEEES
T ss_pred             C-cCCCchhhhHHHHHHHHHHHHHHhcc---CCCcEEEEEeC
Confidence            6 43322    11 22479999999999   89  8777443

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.03  E-value=3.6e-10  Score=99.93  Aligned_cols=95  Identities=16%  Similarity=0.158  Sum_probs=74.9

Q ss_pred             CCCCeEEEecCC------chHHHHHHHHH-CCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCC-CC--------CCcc
Q 041250          113 EGLNSLVDVGGG------TGTAAKAIAKA-FPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK-AI--------SPAY  175 (259)
Q Consensus       113 ~~~~~vlDvGgG------~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~--------~~~D  175 (259)
                      .+..+|||||||      +|..+..++++ +|+.+++++|+ +.+.   . ..++|+|+.+|+.+ ++        ..||
T Consensus       215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---~-~~~rI~fv~GDa~dlpf~~~l~~~d~sFD  290 (419)
T 3sso_A          215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---V-DELRIRTIQGDQNDAEFLDRIARRYGPFD  290 (419)
T ss_dssp             TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---G-CBTTEEEEECCTTCHHHHHHHHHHHCCEE
T ss_pred             CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---h-cCCCcEEEEecccccchhhhhhcccCCcc
Confidence            356899999999      66677777765 59999999999 5552   1 45799999999988 33        3599


Q ss_pred             EEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250          176 AVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI  217 (259)
Q Consensus       176 ~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~  217 (259)
                      +|++. ..|++.  +..+.|++++++|+|   ||.+++.|..
T Consensus       291 lVisd-gsH~~~--d~~~aL~el~rvLKP---GGvlVi~Dl~  326 (419)
T 3sso_A          291 IVIDD-GSHINA--HVRTSFAALFPHVRP---GGLYVIEDMW  326 (419)
T ss_dssp             EEEEC-SCCCHH--HHHHHHHHHGGGEEE---EEEEEEECGG
T ss_pred             EEEEC-Ccccch--hHHHHHHHHHHhcCC---CeEEEEEecc
Confidence            99875 456554  356899999999999   8988888776

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.03  E-value=1.2e-09  Score=87.27  Aligned_cols=104  Identities=13%  Similarity=0.202  Sum_probs=76.3

Q ss_pred             HHHhcccccCCCCeEEEecCCchHHHHHHHHHCCC---------CeEEEeechHHHhhcccCCCCeEEE-eCCCCC-C--
Q 041250          104 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPK---------LECTCFDLPHVVNGLESDLVNLKYV-GGDMFK-A--  170 (259)
Q Consensus       104 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~---------~~~~~~D~~~~~~~a~~~~~ri~~~-~~d~~~-~--  170 (259)
                      +.+.+. .+....+|||+|||+|.++..+++++|.         .+++++|+.++.     ...+++++ .+|+.+ +  
T Consensus        13 l~~~~~-~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----~~~~~~~~~~~d~~~~~~~   86 (196)
T 2nyu_A           13 VNERHQ-ILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----PLEGATFLCPADVTDPRTS   86 (196)
T ss_dssp             HHHHHC-CCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----CCTTCEEECSCCTTSHHHH
T ss_pred             HHHhcC-CCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----cCCCCeEEEeccCCCHHHH
Confidence            344444 2456789999999999999999999865         799999995531     23578999 999876 2  


Q ss_pred             ------CC--CccEEeehhhhcc---C-ChHH-----HHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          171 ------IS--PAYAVLLKWILLD---W-NDEE-----CVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       171 ------~~--~~D~~~~~~vlh~---~-~d~~-----~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                            .+  .||+|++...+|.   + .+..     ...+++++.+.|+|   ||++++..+
T Consensus        87 ~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lv~~~~  146 (196)
T 2nyu_A           87 QRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQP---GGTFLCKTW  146 (196)
T ss_dssp             HHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEEC
T ss_pred             HHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcC---CCEEEEEec
Confidence                  22  5999998654442   1 2221     14789999999999   899888765

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.02  E-value=3.4e-10  Score=98.69  Aligned_cols=99  Identities=15%  Similarity=0.102  Sum_probs=77.6

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-C--------CCCeEEEeCCCCC---CCC--CccEE
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-D--------LVNLKYVGGDMFK---AIS--PAYAV  177 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~--------~~ri~~~~~d~~~---~~~--~~D~~  177 (259)
                      .++.+|||||||+|..+..+++..|..+++++|+ +.+++.|++ .        .+|++++.+|..+   ..+  .||+|
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI  198 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV  198 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred             CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence            4568999999999999999999888889999999 889988876 1        4699999999875   232  59999


Q ss_pred             eehhhhccCChHH--HHHHHHHHHHhcccCCCCcEEEEE
Q 041250          178 LLKWILLDWNDEE--CVKILKKCKEAITRDGKKRKVIIK  214 (259)
Q Consensus       178 ~~~~vlh~~~d~~--~~~il~~~~~~L~p~~~gg~lli~  214 (259)
                      ++...-+..+.+.  ...++++++++|+|   ||.+++.
T Consensus       199 i~d~~~p~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~  234 (334)
T 1xj5_A          199 IVDSSDPIGPAKELFEKPFFQSVARALRP---GGVVCTQ  234 (334)
T ss_dssp             EECCCCTTSGGGGGGSHHHHHHHHHHEEE---EEEEEEE
T ss_pred             EECCCCccCcchhhhHHHHHHHHHHhcCC---CcEEEEe
Confidence            9854321111111  35899999999999   8877775

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.01  E-value=3.6e-10  Score=96.43  Aligned_cols=103  Identities=17%  Similarity=0.278  Sum_probs=77.7

Q ss_pred             hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc--C----CCCeEEEeCCCCC-CCC
Q 041250          101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES--D----LVNLKYVGGDMFK-AIS  172 (259)
Q Consensus       101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~----~~ri~~~~~d~~~-~~~  172 (259)
                      ...+++.++  .....+|||||||+|.++..+++..  .+++++|+ +.+++.+++  .    .++++++.+|+.+ +.+
T Consensus        17 ~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~L~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~   92 (285)
T 1zq9_A           17 INSIIDKAA--LRPTDVVLEVGPGTGNMTVKLLEKA--KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP   92 (285)
T ss_dssp             HHHHHHHTC--CCTTCEEEEECCTTSTTHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC
T ss_pred             HHHHHHhcC--CCCCCEEEEEcCcccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccch
Confidence            455666666  5667899999999999999999984  48999999 888888776  1    2689999999998 677


Q ss_pred             CccEEeehhhhccCChHHHHHHHH--------------HH--HHhcccCCCCcEE
Q 041250          173 PAYAVLLKWILLDWNDEECVKILK--------------KC--KEAITRDGKKRKV  211 (259)
Q Consensus       173 ~~D~~~~~~vlh~~~d~~~~~il~--------------~~--~~~L~p~~~gg~l  211 (259)
                      .+|+|+.+ ..++|..+....+|.              ++  +.+++|   ||++
T Consensus        93 ~fD~vv~n-lpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkP---Gg~~  143 (285)
T 1zq9_A           93 FFDTCVAN-LPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKP---GDKL  143 (285)
T ss_dssp             CCSEEEEE-CCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCT---TCTT
T ss_pred             hhcEEEEe-cCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCC---CCcc
Confidence            89988874 444465555555553              33  358899   8865

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.01  E-value=3.8e-10  Score=96.83  Aligned_cols=99  Identities=9%  Similarity=0.058  Sum_probs=74.7

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-C--------CCCeEEEeCCCCC--CC-C-CccEEe
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-D--------LVNLKYVGGDMFK--AI-S-PAYAVL  178 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~--------~~ri~~~~~d~~~--~~-~-~~D~~~  178 (259)
                      .++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .        .+|++++.+|..+  +. + .||+|+
T Consensus        89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  168 (296)
T 1inl_A           89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII  168 (296)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence            3457999999999999999999878889999999 888888876 1        4799999999866  22 2 599999


Q ss_pred             ehhhhccCC-hH--HHHHHHHHHHHhcccCCCCcEEEEE
Q 041250          179 LKWILLDWN-DE--ECVKILKKCKEAITRDGKKRKVIIK  214 (259)
Q Consensus       179 ~~~vlh~~~-d~--~~~~il~~~~~~L~p~~~gg~lli~  214 (259)
                      +...-+... ..  ...++++++++.|+|   ||.+++.
T Consensus       169 ~d~~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~  204 (296)
T 1inl_A          169 IDSTDPTAGQGGHLFTEEFYQACYDALKE---DGVFSAE  204 (296)
T ss_dssp             EEC----------CCSHHHHHHHHHHEEE---EEEEEEE
T ss_pred             EcCCCcccCchhhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence            753322011 11  125789999999999   7877765

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.01  E-value=1.3e-09  Score=90.09  Aligned_cols=96  Identities=9%  Similarity=0.029  Sum_probs=71.8

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHH-CCCCeEEEeec-hHHH----hhcccCCCCeEEEeCCCCCCC------CCccEEee
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKA-FPKLECTCFDL-PHVV----NGLESDLVNLKYVGGDMFKAI------SPAYAVLL  179 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~----~~a~~~~~ri~~~~~d~~~~~------~~~D~~~~  179 (259)
                      +....+|||+|||+|.++..+++. .|+.+++++|+ +.++    +.++ ...++.++.+|...+.      ..||+|++
T Consensus        74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~-~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~  152 (232)
T 3id6_C           74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQ-RRPNIFPLLADARFPQSYKSVVENVDVLYV  152 (232)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHH-HCTTEEEEECCTTCGGGTTTTCCCEEEEEE
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhh-hcCCeEEEEcccccchhhhccccceEEEEe
Confidence            566789999999999999999986 57889999999 6554    3343 2368999999998631      25999887


Q ss_pred             hhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250          180 KWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKD  215 (259)
Q Consensus       180 ~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e  215 (259)
                      ....   + ++...+++++.+.|+|   ||++++..
T Consensus       153 d~a~---~-~~~~il~~~~~~~Lkp---GG~lvisi  181 (232)
T 3id6_C          153 DIAQ---P-DQTDIAIYNAKFFLKV---NGDMLLVI  181 (232)
T ss_dssp             CCCC---T-THHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred             cCCC---h-hHHHHHHHHHHHhCCC---CeEEEEEE
Confidence            6432   2 3333455666679999   99998874

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.00  E-value=1e-09  Score=95.65  Aligned_cols=103  Identities=14%  Similarity=0.152  Sum_probs=80.3

Q ss_pred             HHHHHhcccccCCCCeEEEecCCchHHHHHHHHH-CCCCeEEEeec-hHHHhhccc--C--------------CCCeEEE
Q 041250          102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKA-FPKLECTCFDL-PHVVNGLES--D--------------LVNLKYV  163 (259)
Q Consensus       102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~--~--------------~~ri~~~  163 (259)
                      ..++..++  .....+|||+|||+|.++..+++. .|+.+++++|+ +.+++.|++  .              .++++++
T Consensus        95 ~~~l~~l~--~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~  172 (336)
T 2b25_A           95 NMILSMMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFI  172 (336)
T ss_dssp             HHHHHHHT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEE
T ss_pred             HHHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEE
Confidence            34555555  667789999999999999999998 58889999999 888888876  1              3689999


Q ss_pred             eCCCCCC---CC--CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          164 GGDMFKA---IS--PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       164 ~~d~~~~---~~--~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      .+|+.+.   ++  .||+|++..     ++.  ..+++++.+.|+|   ||++++...
T Consensus       173 ~~d~~~~~~~~~~~~fD~V~~~~-----~~~--~~~l~~~~~~Lkp---gG~lv~~~~  220 (336)
T 2b25_A          173 HKDISGATEDIKSLTFDAVALDM-----LNP--HVTLPVFYPHLKH---GGVCAVYVV  220 (336)
T ss_dssp             ESCTTCCC-------EEEEEECS-----SST--TTTHHHHGGGEEE---EEEEEEEES
T ss_pred             ECChHHcccccCCCCeeEEEECC-----CCH--HHHHHHHHHhcCC---CcEEEEEeC
Confidence            9999873   33  499998742     211  1378999999999   899987765

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.00  E-value=9.9e-10  Score=88.34  Aligned_cols=89  Identities=16%  Similarity=0.150  Sum_probs=68.6

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCCCCCCccEEeehhhhccCChHHH
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDEEC  191 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~~~~D~~~~~~vlh~~~d~~~  191 (259)
                      ....+|||+|||+|.++..+++. +..+++++|+ +.+++.+++...+++++.+|+.+....||+|++...+|.+++...
T Consensus        50 ~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~D~v~~~~p~~~~~~~~~  128 (200)
T 1ne2_A           50 IGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCGGVNFMVADVSEISGKYDTWIMNPPFGSVVKHSD  128 (200)
T ss_dssp             SBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCCCCEEEEEECCCC-------C
T ss_pred             CCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHHCCCCeeEEEECCCchhccCchh
Confidence            35679999999999999999987 5557999999 899998887434899999999872246999999999998876555


Q ss_pred             HHHHHHHHHhc
Q 041250          192 VKILKKCKEAI  202 (259)
Q Consensus       192 ~~il~~~~~~L  202 (259)
                      .++++++.+.+
T Consensus       129 ~~~l~~~~~~~  139 (200)
T 1ne2_A          129 RAFIDKAFETS  139 (200)
T ss_dssp             HHHHHHHHHHE
T ss_pred             HHHHHHHHHhc
Confidence            67888888776

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=98.98  E-value=2.3e-11  Score=100.79  Aligned_cols=93  Identities=15%  Similarity=0.085  Sum_probs=75.5

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----C--CCCeEEEeCCCCC-CCC-CccEEeehhhhc
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----D--LVNLKYVGGDMFK-AIS-PAYAVLLKWILL  184 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~--~~ri~~~~~d~~~-~~~-~~D~~~~~~vlh  184 (259)
                      ...+|||+|||+|.++..+++..  .+++++|+ +.+++.+++    .  .++++++.+|+.+ +.+ .||+|++...+|
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~  155 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALTG--MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWG  155 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCCS
T ss_pred             CCCEEEECccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCcC
Confidence            56899999999999999999974  78999999 888888876    2  2689999999988 322 699999999888


Q ss_pred             cCChHHHHHHHHHHHHhcccCCCCcEEEE
Q 041250          185 DWNDEECVKILKKCKEAITRDGKKRKVII  213 (259)
Q Consensus       185 ~~~d~~~~~il~~~~~~L~p~~~gg~lli  213 (259)
                      ..++..  ..+.+++++|+|   ||.+++
T Consensus       156 ~~~~~~--~~~~~~~~~L~p---gG~~i~  179 (241)
T 3gdh_A          156 GPDYAT--AETFDIRTMMSP---DGFEIF  179 (241)
T ss_dssp             SGGGGG--SSSBCTTTSCSS---CHHHHH
T ss_pred             Ccchhh--hHHHHHHhhcCC---cceeHH
Confidence            766543  356678888888   787443

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=98.98  E-value=1.1e-09  Score=96.63  Aligned_cols=94  Identities=14%  Similarity=0.150  Sum_probs=72.3

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhccc------CCCCeEEEeCCCCC-CCC-CccEEeehhhhccC
Q 041250          115 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES------DLVNLKYVGGDMFK-AIS-PAYAVLLKWILLDW  186 (259)
Q Consensus       115 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~d~~~-~~~-~~D~~~~~~vlh~~  186 (259)
                      ..+|||||||+|.++...+++. .-+++++|..++++.|++      ..++|+++.+|+.+ +.| ++|+|+.-+.-+..
T Consensus        84 ~k~VLDvG~GtGiLs~~Aa~aG-A~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~~~l  162 (376)
T 4hc4_A           84 GKTVLDVGAGTGILSIFCAQAG-ARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGYGL  162 (376)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTT-CSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCBTTB
T ss_pred             CCEEEEeCCCccHHHHHHHHhC-CCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeecccccc
Confidence            5789999999999988777653 347999999777777765      56899999999988 667 59999875443333


Q ss_pred             ChH-HHHHHHHHHHHhcccCCCCcEEE
Q 041250          187 NDE-ECVKILKKCKEAITRDGKKRKVI  212 (259)
Q Consensus       187 ~d~-~~~~il~~~~~~L~p~~~gg~ll  212 (259)
                      ..+ ....++....+.|+|   ||.++
T Consensus       163 ~~e~~l~~~l~a~~r~Lkp---~G~~i  186 (376)
T 4hc4_A          163 LHESMLSSVLHARTKWLKE---GGLLL  186 (376)
T ss_dssp             TTTCSHHHHHHHHHHHEEE---EEEEE
T ss_pred             cccchhhhHHHHHHhhCCC---CceEC
Confidence            222 355778888899999   78765

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=98.98  E-value=1.3e-09  Score=92.38  Aligned_cols=105  Identities=13%  Similarity=0.138  Sum_probs=79.5

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCC-CeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-CC-----C-CccEE
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPK-LECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AI-----S-PAYAV  177 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~~-----~-~~D~~  177 (259)
                      .....+|||+|||+|..+..+++..++ .+++++|+ +.+++.+++     ...+++++.+|+.+ +.     + .||+|
T Consensus        81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V  160 (274)
T 3ajd_A           81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKI  160 (274)
T ss_dssp             CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEE
Confidence            455689999999999999999999877 79999999 788887766     34589999999977 22     3 59999


Q ss_pred             eehh------hhcc---CChH-------HHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250          178 LLKW------ILLD---WNDE-------ECVKILKKCKEAITRDGKKRKVIIKDMIKE  219 (259)
Q Consensus       178 ~~~~------vlh~---~~d~-------~~~~il~~~~~~L~p~~~gg~lli~e~~~~  219 (259)
                      ++.-      +++.   |+.+       ...++|+++.+.|+|   ||++++......
T Consensus       161 l~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lv~stcs~~  215 (274)
T 3ajd_A          161 LLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKK---DGELVYSTCSME  215 (274)
T ss_dssp             EEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEE---EEEEEEEESCCC
T ss_pred             EEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCC---CCEEEEEECCCC
Confidence            9862      2221   2221       236899999999999   898888766544

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=98.98  E-value=4.1e-10  Score=105.02  Aligned_cols=105  Identities=10%  Similarity=0.091  Sum_probs=85.1

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC---CC-C-CccEEeeh
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK---AI-S-PAYAVLLK  180 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~---~~-~-~~D~~~~~  180 (259)
                      ..++.+|||||||.|.++..+++.  +.+++++|. +.+++.|+.     ...+|+|..++..+   +. + .||+|++.
T Consensus        64 ~~~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~  141 (569)
T 4azs_A           64 LGRPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGL  141 (569)
T ss_dssp             HTSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEE
T ss_pred             cCCCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEEC
Confidence            345679999999999999999998  679999999 888888875     23579999998865   22 2 59999999


Q ss_pred             hhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCC
Q 041250          181 WILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENR  221 (259)
Q Consensus       181 ~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~  221 (259)
                      .++|+.++.+...-+..+.+.|++   +++.++...+..+.
T Consensus       142 e~~ehv~~~~~~~~~~~~~~tl~~---~~~~~~~~~~~~e~  179 (569)
T 4azs_A          142 SVFHHIVHLHGIDEVKRLLSRLAD---VTQAVILELAVKEE  179 (569)
T ss_dssp             SCHHHHHHHHCHHHHHHHHHHHHH---HSSEEEEECCCTTS
T ss_pred             cchhcCCCHHHHHHHHHHHHHhcc---ccceeeEEeccccc
Confidence            999999887766666778888888   78888877665543

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=98.97  E-value=1.2e-09  Score=93.15  Aligned_cols=101  Identities=8%  Similarity=0.014  Sum_probs=75.0

Q ss_pred             HHHHhcccccC-CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEe-CCCCC----CCC--C
Q 041250          103 VMIQKCKNVFE-GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVG-GDMFK----AIS--P  173 (259)
Q Consensus       103 ~~~~~~~~~~~-~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~-~d~~~----~~~--~  173 (259)
                      .+++.+.  +. ...+|||||||+|.++..+++. +..+++++|+ +.+++.+.+...|+.... .|+..    .+|  .
T Consensus        75 ~~l~~~~--~~~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~  151 (291)
T 3hp7_A           75 KALAVFN--LSVEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGL  151 (291)
T ss_dssp             HHHHHTT--CCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCC
T ss_pred             HHHHhcC--CCccccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCC
Confidence            3455555  33 4569999999999999998887 4558999999 788877443455665543 34432    133  3


Q ss_pred             ccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEE
Q 041250          174 AYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIK  214 (259)
Q Consensus       174 ~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~  214 (259)
                      ||++++..++|++     ..+|++++++|+|   ||++++.
T Consensus       152 fD~v~~d~sf~sl-----~~vL~e~~rvLkp---GG~lv~l  184 (291)
T 3hp7_A          152 PSFASIDVSFISL-----NLILPALAKILVD---GGQVVAL  184 (291)
T ss_dssp             CSEEEECCSSSCG-----GGTHHHHHHHSCT---TCEEEEE
T ss_pred             CCEEEEEeeHhhH-----HHHHHHHHHHcCc---CCEEEEE
Confidence            8999988888754     4689999999999   9999886

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=98.96  E-value=9.6e-10  Score=94.68  Aligned_cols=96  Identities=11%  Similarity=0.088  Sum_probs=70.0

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-----hHHHhhccc---CCCCeEEEeC-CCCC-CCCCccEEeehh
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-----PHVVNGLES---DLVNLKYVGG-DMFK-AISPAYAVLLKW  181 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-----~~~~~~a~~---~~~ri~~~~~-d~~~-~~~~~D~~~~~~  181 (259)
                      +.+..+|||||||+|.++..++++   .+++++|+     +..++....   ..+++.++.+ |+.+ +...||+|++..
T Consensus        80 ~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~~~~fD~V~sd~  156 (305)
T 2p41_A           80 VTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLCDI  156 (305)
T ss_dssp             SCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCCcCCCCEEEECC
Confidence            455679999999999999999887   47999998     444433221   2368999999 9987 444699999876


Q ss_pred             hhc---cCChHH-HHHHHHHHHHhcccCCCCcEEEE
Q 041250          182 ILL---DWNDEE-CVKILKKCKEAITRDGKKRKVII  213 (259)
Q Consensus       182 vlh---~~~d~~-~~~il~~~~~~L~p~~~gg~lli  213 (259)
                      .++   ...+.. ...+|+.+.+.|+|   ||.+++
T Consensus       157 ~~~~g~~~~d~~~~l~~L~~~~~~Lkp---GG~~v~  189 (305)
T 2p41_A          157 GESSPNPTVEAGRTLRVLNLVENWLSN---NTQFCV  189 (305)
T ss_dssp             CCCCSSHHHHHHHHHHHHHHHHHHCCT---TCEEEE
T ss_pred             ccccCcchhhHHHHHHHHHHHHHHhCC---CCEEEE
Confidence            553   222222 23689999999999   897766

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=98.93  E-value=2.7e-09  Score=89.90  Aligned_cols=90  Identities=11%  Similarity=-0.004  Sum_probs=74.3

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-C--------CCCeEEEeCCCCCCCCCccEEeehhh
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-D--------LVNLKYVGGDMFKAISPAYAVLLKWI  182 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~--------~~ri~~~~~d~~~~~~~~D~~~~~~v  182 (259)
                      +++.+|||||||+|..+.++++. + .+++++|+ +.+++.|++ .        .+|++++.+|..+....||+|++.  
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~~~fD~Ii~d--  146 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIFCL--  146 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCCCCEEEEEES--
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHHhhCCEEEEC--
Confidence            45679999999999999999988 7 89999999 899999886 1        368999999998733569999975  


Q ss_pred             hccCChHHHHHHHHHHHHhcccCCCCcEEEEE
Q 041250          183 LLDWNDEECVKILKKCKEAITRDGKKRKVIIK  214 (259)
Q Consensus       183 lh~~~d~~~~~il~~~~~~L~p~~~gg~lli~  214 (259)
                         .++..  .+++++++.|+|   ||.+++.
T Consensus       147 ---~~dp~--~~~~~~~~~L~p---gG~lv~~  170 (262)
T 2cmg_A          147 ---QEPDI--HRIDGLKRMLKE---DGVFISV  170 (262)
T ss_dssp             ---SCCCH--HHHHHHHTTEEE---EEEEEEE
T ss_pred             ---CCChH--HHHHHHHHhcCC---CcEEEEE
Confidence               23332  489999999999   8887775

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=98.92  E-value=6.7e-09  Score=94.12  Aligned_cols=106  Identities=15%  Similarity=0.130  Sum_probs=83.1

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCC-CeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-C--CC--CccEEee
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPK-LECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-A--IS--PAYAVLL  179 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~--~~--~~D~~~~  179 (259)
                      .....+|||+|||+|..+..+++..++ .+++++|+ +..++.+++     ...+++++.+|+.+ +  ++  .||+|++
T Consensus       257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~  336 (450)
T 2yxl_A          257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLL  336 (450)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEE
T ss_pred             CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEE
Confidence            556679999999999999999999887 79999999 777777665     34689999999987 3  43  4999996


Q ss_pred             ------hhhhccCChH-------HH-------HHHHHHHHHhcccCCCCcEEEEEeeeecC
Q 041250          180 ------KWILLDWNDE-------EC-------VKILKKCKEAITRDGKKRKVIIKDMIKEN  220 (259)
Q Consensus       180 ------~~vlh~~~d~-------~~-------~~il~~~~~~L~p~~~gg~lli~e~~~~~  220 (259)
                            ..+++..++.       +.       .++|+++.+.|+|   ||++++.+.....
T Consensus       337 D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp---GG~lvy~tcs~~~  394 (450)
T 2yxl_A          337 DAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKP---GGRLLYTTCSIFK  394 (450)
T ss_dssp             ECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEE---EEEEEEEESCCCG
T ss_pred             cCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeCCCCh
Confidence                  3355544432       11       5789999999999   9999888775543

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=98.89  E-value=4.4e-09  Score=86.99  Aligned_cols=100  Identities=10%  Similarity=0.057  Sum_probs=66.4

Q ss_pred             HHHHHhccccc-CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEe---------CCCCCC
Q 041250          102 SVMIQKCKNVF-EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVG---------GDMFKA  170 (259)
Q Consensus       102 ~~~~~~~~~~~-~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~---------~d~~~~  170 (259)
                      ...++.+.  . ....+|||||||+|.++..+++.. ..+++++|+ +.+++.+++...++....         .|+..+
T Consensus        26 ~~~L~~~~--~~~~g~~VLDiGcGtG~~t~~la~~g-~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (232)
T 3opn_A           26 EKALKEFH--LEINGKTCLDIGSSTGGFTDVMLQNG-AKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQG  102 (232)
T ss_dssp             HHHHHHTT--CCCTTCEEEEETCTTSHHHHHHHHTT-CSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSC
T ss_pred             HHHHHHcC--CCCCCCEEEEEccCCCHHHHHHHhcC-CCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcC
Confidence            34455554  3 345699999999999999999883 348999999 788887665444443322         222211


Q ss_pred             CCCccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEE
Q 041250          171 ISPAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIK  214 (259)
Q Consensus       171 ~~~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~  214 (259)
                      .  +|.+.+..++..+     ..+|++++++|+|   ||++++.
T Consensus       103 ~--~d~~~~D~v~~~l-----~~~l~~i~rvLkp---gG~lv~~  136 (232)
T 3opn_A          103 R--PSFTSIDVSFISL-----DLILPPLYEILEK---NGEVAAL  136 (232)
T ss_dssp             C--CSEEEECCSSSCG-----GGTHHHHHHHSCT---TCEEEEE
T ss_pred             C--CCEEEEEEEhhhH-----HHHHHHHHHhccC---CCEEEEE
Confidence            1  3333333333332     4689999999999   9998885

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=98.87  E-value=8.6e-09  Score=92.20  Aligned_cols=107  Identities=8%  Similarity=-0.040  Sum_probs=80.1

Q ss_pred             hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCCCC--CCccE
Q 041250          101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKAI--SPAYA  176 (259)
Q Consensus       101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~--~~~D~  176 (259)
                      ...+++.+.  .....+|||+|||+|.++..+++++ +..+++++|+ +.+++.|    .+++++.+|+++..  ..||+
T Consensus        28 ~~~~~~~~~--~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----~~~~~~~~D~~~~~~~~~fD~  101 (421)
T 2ih2_A           28 VDFMVSLAE--APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----PWAEGILADFLLWEPGEAFDL  101 (421)
T ss_dssp             HHHHHHHCC--CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----TTEEEEESCGGGCCCSSCEEE
T ss_pred             HHHHHHhhc--cCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----CCCcEEeCChhhcCccCCCCE
Confidence            344555554  3445699999999999999999987 6789999999 7777777    58999999999833  36999


Q ss_pred             Eeehhhhcc----------CChHHH-----------------HHHHHHHHHhcccCCCCcEEEEEee
Q 041250          177 VLLKWILLD----------WNDEEC-----------------VKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       177 ~~~~~vlh~----------~~d~~~-----------------~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      |+..-....          .+++..                 ..+++++.+.|+|   ||+++++-+
T Consensus       102 Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~---~G~~~~i~p  165 (421)
T 2ih2_A          102 ILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKP---GGVLVFVVP  165 (421)
T ss_dssp             EEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred             EEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCC---CCEEEEEEC
Confidence            999632221          222221                 2568999999999   898877765

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=98.85  E-value=4.3e-09  Score=92.06  Aligned_cols=100  Identities=10%  Similarity=0.076  Sum_probs=81.1

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCC-----CeEEEeec-hHHHhhccc----CCCCeEEEeCCCCCCCC--CccEEeehh
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAFPK-----LECTCFDL-PHVVNGLES----DLVNLKYVGGDMFKAIS--PAYAVLLKW  181 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~p~-----~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~~~~--~~D~~~~~~  181 (259)
                      ...+|+|+|||+|.++..+++..+.     .+++++|+ +.+++.|+.    ...++.++.+|.+.+.+  .||+|+...
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~~~~~fD~Ii~NP  209 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISDL  209 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEEC
T ss_pred             CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCccccCCccEEEECC
Confidence            4579999999999999999998765     68999999 888888876    22378999999998543  599999998


Q ss_pred             hhccCChHHH----------------HHHHHHHHHhcccCCCCcEEEEEee
Q 041250          182 ILLDWNDEEC----------------VKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       182 vlh~~~d~~~----------------~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      .++.++.++.                ..+++++.+.|+|   ||+++++-+
T Consensus       210 Pfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~---gG~~~~v~p  257 (344)
T 2f8l_A          210 PVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKP---GGYLFFLVP  257 (344)
T ss_dssp             CCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred             CCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCC---CCEEEEEEC
Confidence            8776655432                2589999999999   898877764

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=98.83  E-value=2.7e-08  Score=80.10  Aligned_cols=89  Identities=19%  Similarity=0.091  Sum_probs=71.7

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCCCCCCccEEeehhhhccCC
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFKAISPAYAVLLKWILLDWN  187 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~~~~~~D~~~~~~vlh~~~  187 (259)
                      ....+|||+|||+|.++..+++..+ .+++++|+ +.+++.+++    ..-+++++.+|+.+....||+|++...+|.+.
T Consensus        48 ~~~~~vlD~g~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~D~v~~~~p~~~~~  126 (207)
T 1wy7_A           48 IEGKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPFGSQR  126 (207)
T ss_dssp             STTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCCSSSS
T ss_pred             CCcCEEEEeeCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcCCCCCEEEEcCCCcccc
Confidence            3467999999999999999998743 37999999 888888876    11289999999987323699999999888887


Q ss_pred             hHHHHHHHHHHHHhc
Q 041250          188 DEECVKILKKCKEAI  202 (259)
Q Consensus       188 d~~~~~il~~~~~~L  202 (259)
                      .....++++++.+.+
T Consensus       127 ~~~~~~~l~~~~~~l  141 (207)
T 1wy7_A          127 KHADRPFLLKAFEIS  141 (207)
T ss_dssp             TTTTHHHHHHHHHHC
T ss_pred             CCchHHHHHHHHHhc
Confidence            555567888888776

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.82  E-value=1.1e-08  Score=85.24  Aligned_cols=83  Identities=11%  Similarity=0.237  Sum_probs=62.3

Q ss_pred             hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEeCCCCC-CCC-Cc
Q 041250          101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFK-AIS-PA  174 (259)
Q Consensus       101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~-~~~-~~  174 (259)
                      ...+++.++  .....+|||||||+|.++..++++.  .+++++|+ +.+++.+++   ..++++++.+|+.+ +++ ..
T Consensus        19 ~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~   94 (244)
T 1qam_A           19 IDKIMTNIR--LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQ   94 (244)
T ss_dssp             HHHHHTTCC--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSC
T ss_pred             HHHHHHhCC--CCCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccCC
Confidence            345565555  5667899999999999999999985  68999999 888888876   23799999999988 655 23


Q ss_pred             cEEeehhhhccCC
Q 041250          175 YAVLLKWILLDWN  187 (259)
Q Consensus       175 D~~~~~~vlh~~~  187 (259)
                      +..++++.-++++
T Consensus        95 ~~~vv~nlPy~~~  107 (244)
T 1qam_A           95 SYKIFGNIPYNIS  107 (244)
T ss_dssp             CCEEEEECCGGGH
T ss_pred             CeEEEEeCCcccC
Confidence            3344444444443

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=98.82  E-value=1.1e-08  Score=89.18  Aligned_cols=99  Identities=18%  Similarity=0.133  Sum_probs=74.8

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCC-CeEEEeCCCCCC-------CCCccEEe
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLV-NLKYVGGDMFKA-------ISPAYAVL  178 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~-ri~~~~~d~~~~-------~~~~D~~~  178 (259)
                      ...+|||+|||+|.++..+++..  .+++++|+ +.+++.+++      ..+ +++++.+|+++.       ...||+|+
T Consensus       153 ~~~~VLDlgcGtG~~sl~la~~g--a~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii  230 (332)
T 2igt_A          153 RPLKVLNLFGYTGVASLVAAAAG--AEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL  230 (332)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTT--CEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred             CCCcEEEcccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence            35699999999999999999974  39999999 889988876      223 599999999872       12599999


Q ss_pred             ehhhh-cc------CC-hHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250          179 LKWIL-LD------WN-DEECVKILKKCKEAITRDGKKRKVIIKDMI  217 (259)
Q Consensus       179 ~~~vl-h~------~~-d~~~~~il~~~~~~L~p~~~gg~lli~e~~  217 (259)
                      +.... ..      +. .+...++++++.+.|+|   ||.+++....
T Consensus       231 ~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~Lkp---gG~lli~~~~  274 (332)
T 2igt_A          231 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSP---KALGLVLTAY  274 (332)
T ss_dssp             ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCT---TCCEEEEEEC
T ss_pred             ECCccccCCchHHHHHHHHHHHHHHHHHHHhcCc---CcEEEEEECC
Confidence            84321 10      10 23356899999999999   8987665544

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=98.81  E-value=7.8e-09  Score=88.75  Aligned_cols=90  Identities=16%  Similarity=0.254  Sum_probs=66.5

Q ss_pred             hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-CCCC
Q 041250          101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AISP  173 (259)
Q Consensus       101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~~~~  173 (259)
                      ...+++.++  .....+|||||||+|.++..++++  ..+++++|+ +.+++.+++     ..++++++.+|+.+ +.+.
T Consensus        31 ~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~~  106 (299)
T 2h1r_A           31 LDKIIYAAK--IKSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFPK  106 (299)
T ss_dssp             HHHHHHHHC--CCTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCCC
T ss_pred             HHHHHHhcC--CCCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCccc
Confidence            345555555  566789999999999999999987  458999999 888888776     23789999999988 6668


Q ss_pred             ccEEeehhhhccCChHHHHHHH
Q 041250          174 AYAVLLKWILLDWNDEECVKIL  195 (259)
Q Consensus       174 ~D~~~~~~vlh~~~d~~~~~il  195 (259)
                      +|+|++. ..++|..+...+++
T Consensus       107 ~D~Vv~n-~py~~~~~~~~~ll  127 (299)
T 2h1r_A          107 FDVCTAN-IPYKISSPLIFKLI  127 (299)
T ss_dssp             CSEEEEE-CCGGGHHHHHHHHH
T ss_pred             CCEEEEc-CCcccccHHHHHHH
Confidence            9988875 44557666666666

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=98.80  E-value=2.8e-08  Score=89.45  Aligned_cols=105  Identities=11%  Similarity=0.096  Sum_probs=81.5

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCCC---CC--CccEEee--
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFKA---IS--PAYAVLL--  179 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~~---~~--~~D~~~~--  179 (259)
                      .....+|||+|||+|..+..+++..|+.+++++|+ +..++.+++    ..-+++++.+|+.+.   ++  .||+|++  
T Consensus       244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~  323 (429)
T 1sqg_A          244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA  323 (429)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred             CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEeC
Confidence            45567999999999999999999999889999999 777777665    344689999999872   33  5999986  


Q ss_pred             ----hhhhccCCh-------HHH-------HHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250          180 ----KWILLDWND-------EEC-------VKILKKCKEAITRDGKKRKVIIKDMIKE  219 (259)
Q Consensus       180 ----~~vlh~~~d-------~~~-------~~il~~~~~~L~p~~~gg~lli~e~~~~  219 (259)
                          ..+++..++       ++.       .++|+++.+.|+|   ||++++......
T Consensus       324 Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~Lkp---GG~lvystcs~~  378 (429)
T 1sqg_A          324 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKT---GGTLVYATCSVL  378 (429)
T ss_dssp             CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEE---EEEEEEEESCCC
T ss_pred             CCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEECCCC
Confidence                234444333       222       4889999999999   899988876544

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=98.78  E-value=9.5e-09  Score=93.09  Aligned_cols=103  Identities=13%  Similarity=0.059  Sum_probs=79.1

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCC-CeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-C--CC-CccEEeeh
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPK-LECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-A--IS-PAYAVLLK  180 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~--~~-~~D~~~~~  180 (259)
                      .....+|||+|||+|..+..+++..++ .+++++|+ +.+++.+++     ... +.++.+|..+ +  .+ .||+|++.
T Consensus        99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~~~~~FD~Il~D  177 (464)
T 3m6w_A           99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGTYFHRVLLD  177 (464)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHHHCSCEEEEEEE
T ss_pred             cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhhccccCCEEEEC
Confidence            556789999999999999999998865 68999999 888887776     334 9999999876 3  23 59999951


Q ss_pred             -------------hhhccCChHHH-------HHHHHHHHHhcccCCCCcEEEEEeeee
Q 041250          181 -------------WILLDWNDEEC-------VKILKKCKEAITRDGKKRKVIIKDMIK  218 (259)
Q Consensus       181 -------------~vlh~~~d~~~-------~~il~~~~~~L~p~~~gg~lli~e~~~  218 (259)
                                   .+...|+.+..       .++|+++.+.|+|   ||+|+......
T Consensus       178 ~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp---GG~LvysTCs~  232 (464)
T 3m6w_A          178 APCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGP---GGVLVYSTCTF  232 (464)
T ss_dssp             CCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEE---EEEEEEEESCC
T ss_pred             CCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeccC
Confidence                         22233444333       6799999999999   89888765543

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=98.78  E-value=9e-09  Score=91.05  Aligned_cols=92  Identities=15%  Similarity=0.046  Sum_probs=71.9

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-CCC--CccEEeehh
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AIS--PAYAVLLKW  181 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~--~~D~~~~~~  181 (259)
                      +.+..+|||+|||+|.+++++++..+..+++++|+ +.+++.|++      ..++++++.+|+.+ +.+  .||+|++..
T Consensus       215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~np  294 (373)
T 3tm4_A          215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNL  294 (373)
T ss_dssp             TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEEC
T ss_pred             cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECC
Confidence            34567899999999999999999988778999999 899998887      23689999999998 544  599999975


Q ss_pred             hhccCC-----hHH-HHHHHHHHHHhccc
Q 041250          182 ILLDWN-----DEE-CVKILKKCKEAITR  204 (259)
Q Consensus       182 vlh~~~-----d~~-~~~il~~~~~~L~p  204 (259)
                      .++...     -++ -.++++.+++.| +
T Consensus       295 Pyg~r~~~~~~~~~ly~~~~~~l~r~l-~  322 (373)
T 3tm4_A          295 PYGLKIGKKSMIPDLYMKFFNELAKVL-E  322 (373)
T ss_dssp             CCC------CCHHHHHHHHHHHHHHHE-E
T ss_pred             CCCcccCcchhHHHHHHHHHHHHHHHc-C
Confidence            544221     111 257888999988 5

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=98.78  E-value=3.9e-08  Score=89.65  Aligned_cols=103  Identities=14%  Similarity=0.185  Sum_probs=80.0

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCC-CCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-C--CC-CccEEeeh--
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-A--IS-PAYAVLLK--  180 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~--~~-~~D~~~~~--  180 (259)
                      ...+|||+|||+|..+..+++..+ ..+++++|+ +..++.+++     ...++.++.+|..+ +  .+ .||.|++.  
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P  196 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP  196 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence            678999999999999999999875 578999999 788877766     34689999999987 3  34 59999972  


Q ss_pred             ----hhh-------ccCChHH-------HHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250          181 ----WIL-------LDWNDEE-------CVKILKKCKEAITRDGKKRKVIIKDMIKE  219 (259)
Q Consensus       181 ----~vl-------h~~~d~~-------~~~il~~~~~~L~p~~~gg~lli~e~~~~  219 (259)
                          .++       +.|+.++       ..++|+++.+.|+|   ||+|++......
T Consensus       197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp---GG~LvysTcs~~  250 (479)
T 2frx_A          197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRP---GGTLVYSTCTLN  250 (479)
T ss_dssp             CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEESCCS
T ss_pred             cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCC---CCEEEEecccCC
Confidence                122       2354332       24789999999999   899887766443

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.74  E-value=3.4e-09  Score=88.24  Aligned_cols=105  Identities=14%  Similarity=0.221  Sum_probs=76.2

Q ss_pred             hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEeCCCCC-CCC---
Q 041250          101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFK-AIS---  172 (259)
Q Consensus       101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~-~~~---  172 (259)
                      ...+++.++  .....+|||||||+|.++..+++..  .+++++|+ +.+++.+++   ..++++++.+|+.+ +++   
T Consensus        18 ~~~i~~~~~--~~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~   93 (245)
T 1yub_A           18 LNQIIKQLN--LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQ   93 (245)
T ss_dssp             HHHHHHHCC--CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSS
T ss_pred             HHHHHHhcC--CCCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCC
Confidence            455666666  6667899999999999999999985  78999999 888888876   24689999999998 554   


Q ss_pred             CccEEeehhhhccCChHHHHHHH--------------HHHHHhcccCCCCcEEEEE
Q 041250          173 PAYAVLLKWILLDWNDEECVKIL--------------KKCKEAITRDGKKRKVIIK  214 (259)
Q Consensus       173 ~~D~~~~~~vlh~~~d~~~~~il--------------~~~~~~L~p~~~gg~lli~  214 (259)
                      .|  .++++.-++.+......++              +.+.+.|+|   ||++.++
T Consensus        94 ~f--~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~---~G~l~v~  144 (245)
T 1yub_A           94 RY--KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDI---HRTLGLL  144 (245)
T ss_dssp             EE--EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCG---GGSHHHH
T ss_pred             Cc--EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCC---CCchhhh
Confidence            25  3444433334433333333              558888998   8876543

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=98.74  E-value=3.3e-08  Score=87.93  Aligned_cols=113  Identities=10%  Similarity=0.000  Sum_probs=83.8

Q ss_pred             hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCC--------------------------------------CeEE
Q 041250          101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPK--------------------------------------LECT  142 (259)
Q Consensus       101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~--------------------------------------~~~~  142 (259)
                      +..++....  +.+..+|||.+||+|.++++++....+                                      .+++
T Consensus       190 Aa~ll~l~~--~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~  267 (393)
T 3k0b_A          190 AAALVLLTS--WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNII  267 (393)
T ss_dssp             HHHHHHHSC--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEE
T ss_pred             HHHHHHHhC--CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEE
Confidence            344555555  566789999999999999999876443                                      5699


Q ss_pred             Eeec-hHHHhhccc------CCCCeEEEeCCCCC-CCC-CccEEeehhhhccC-C-hHHHHHHHHHHHHhcccCCCCcEE
Q 041250          143 CFDL-PHVVNGLES------DLVNLKYVGGDMFK-AIS-PAYAVLLKWILLDW-N-DEECVKILKKCKEAITRDGKKRKV  211 (259)
Q Consensus       143 ~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~-~~D~~~~~~vlh~~-~-d~~~~~il~~~~~~L~p~~~gg~l  211 (259)
                      ++|+ +.+++.|++      ..++|+++.+|+++ +.+ .||+|++.--.+.- . .++...+.+.+.+.|++ -+|+++
T Consensus       268 GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~-~~g~~~  346 (393)
T 3k0b_A          268 GGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKR-MPTWSV  346 (393)
T ss_dssp             EEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHT-CTTCEE
T ss_pred             EEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhc-CCCCEE
Confidence            9999 899998886      34679999999998 444 59999988544322 2 24556778877777775 337888


Q ss_pred             EEEee
Q 041250          212 IIKDM  216 (259)
Q Consensus       212 li~e~  216 (259)
                      +|+..
T Consensus       347 ~iit~  351 (393)
T 3k0b_A          347 YVLTS  351 (393)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            88764

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=98.73  E-value=1.6e-08  Score=85.69  Aligned_cols=100  Identities=14%  Similarity=0.055  Sum_probs=79.0

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCCC--CCccEEeehhh
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAI--SPAYAVLLKWI  182 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~--~~~D~~~~~~v  182 (259)
                      +....+|||+|||+|.+++.+++.. ..+++++|+ |.+++.+++      ..++++++.+|.++-.  ..||.|++...
T Consensus       123 ~~~g~~VlD~~aG~G~~~i~~a~~g-~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~~p  201 (278)
T 3k6r_A          123 AKPDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV  201 (278)
T ss_dssp             CCTTCEEEETTCTTTTTTHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred             cCCCCEEEEecCcCcHHHHHHHHhc-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEECCC
Confidence            4557899999999999999999873 568999999 888888776      5689999999998832  25999887632


Q ss_pred             hccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCC
Q 041250          183 LLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENR  221 (259)
Q Consensus       183 lh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~  221 (259)
                      ..      +...|..+.+.|+|   ||.|.+.+.+..+.
T Consensus       202 ~~------~~~~l~~a~~~lk~---gG~ih~~~~~~e~~  231 (278)
T 3k6r_A          202 VR------THEFIPKALSIAKD---GAIIHYHNTVPEKL  231 (278)
T ss_dssp             SS------GGGGHHHHHHHEEE---EEEEEEEEEEEGGG
T ss_pred             Cc------HHHHHHHHHHHcCC---CCEEEEEeeecccc
Confidence            11      23578888899999   89888888765543

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=98.73  E-value=2.5e-08  Score=86.96  Aligned_cols=95  Identities=16%  Similarity=0.153  Sum_probs=76.7

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCCCCCccEEeehhhhcc
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAISPAYAVLLKWILLD  185 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~~~D~~~~~~vlh~  185 (259)
                      .+..+|||+|||+|.++.. ++  +..+++++|+ +.+++.+++      ..++++++.+|.++....||+|++...-+ 
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~~~fD~Vi~dpP~~-  269 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVDVKGNRVIMNLPKF-  269 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCCCCEEEEEECCTTT-
T ss_pred             CCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhcCCCcEEEECCcHh-
Confidence            4567999999999999999 76  4778999999 888888876      23689999999998446699999853211 


Q ss_pred             CChHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250          186 WNDEECVKILKKCKEAITRDGKKRKVIIKDMIKE  219 (259)
Q Consensus       186 ~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~  219 (259)
                           ..++++.+.+.|+|   ||.+++++....
T Consensus       270 -----~~~~l~~~~~~L~~---gG~l~~~~~~~~  295 (336)
T 2yx1_A          270 -----AHKFIDKALDIVEE---GGVIHYYTIGKD  295 (336)
T ss_dssp             -----GGGGHHHHHHHEEE---EEEEEEEEEESS
T ss_pred             -----HHHHHHHHHHHcCC---CCEEEEEEeecC
Confidence                 23789999999999   898888887655

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=98.72  E-value=1e-07  Score=84.45  Aligned_cols=113  Identities=14%  Similarity=0.036  Sum_probs=86.0

Q ss_pred             hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCC--------------------------------------CeEE
Q 041250          101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPK--------------------------------------LECT  142 (259)
Q Consensus       101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~--------------------------------------~~~~  142 (259)
                      +..++....  +.+...|+|.+||+|.++++.+....+                                      .+++
T Consensus       183 Aaall~l~~--~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~  260 (384)
T 3ldg_A          183 AAAIILLSN--WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDIS  260 (384)
T ss_dssp             HHHHHHHTT--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEE
T ss_pred             HHHHHHHhC--CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEE
Confidence            344555555  566789999999999999999875443                                      5699


Q ss_pred             Eeec-hHHHhhccc------CCCCeEEEeCCCCC-CCC-CccEEeehhhhcc-C-ChHHHHHHHHHHHHhcccCCCCcEE
Q 041250          143 CFDL-PHVVNGLES------DLVNLKYVGGDMFK-AIS-PAYAVLLKWILLD-W-NDEECVKILKKCKEAITRDGKKRKV  211 (259)
Q Consensus       143 ~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~-~~D~~~~~~vlh~-~-~d~~~~~il~~~~~~L~p~~~gg~l  211 (259)
                      ++|+ +.+++.|++      ..++++++.+|+++ +.+ .+|+|++.--.+. . ..++...+++.+.+.|++ -+|+++
T Consensus       261 GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~-~~g~~~  339 (384)
T 3ldg_A          261 GFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAP-LKTWSQ  339 (384)
T ss_dssp             EEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTT-CTTSEE
T ss_pred             EEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhh-CCCcEE
Confidence            9999 899998886      34689999999998 444 5999998854432 3 345667888888888876 348888


Q ss_pred             EEEee
Q 041250          212 IIKDM  216 (259)
Q Consensus       212 li~e~  216 (259)
                      +|+..
T Consensus       340 ~iit~  344 (384)
T 3ldg_A          340 FILTN  344 (384)
T ss_dssp             EEEES
T ss_pred             EEEEC
Confidence            88764

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=98.69  E-value=2.8e-08  Score=88.47  Aligned_cols=100  Identities=15%  Similarity=0.064  Sum_probs=76.9

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----C-CCCeEEEeCCCCCC--C----C-CccEEee
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----D-LVNLKYVGGDMFKA--I----S-PAYAVLL  179 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~-~~ri~~~~~d~~~~--~----~-~~D~~~~  179 (259)
                      +..+|||+|||+|.++..+++. +..+++++|+ +.+++.+++     . .++++++.+|+++.  .    . .||+|++
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~  295 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL  295 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence            5679999999999999999987 3458999999 888888876     2 23899999999872  1    2 5999998


Q ss_pred             hhhhccCCh-------HHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250          180 KWILLDWND-------EECVKILKKCKEAITRDGKKRKVIIKDMI  217 (259)
Q Consensus       180 ~~vlh~~~d-------~~~~~il~~~~~~L~p~~~gg~lli~e~~  217 (259)
                      ....+..+.       .....+++++.+.|+|   ||.++++...
T Consensus       296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lv~~~~~  337 (396)
T 2as0_A          296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKD---GGILVTCSCS  337 (396)
T ss_dssp             CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEE---EEEEEEEECC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEECC
Confidence            532221111       3456789999999999   8888877653

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=98.67  E-value=6.3e-08  Score=82.79  Aligned_cols=78  Identities=13%  Similarity=0.211  Sum_probs=63.2

Q ss_pred             hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEeCCCCC-CCCC--
Q 041250          101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFK-AISP--  173 (259)
Q Consensus       101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~-~~~~--  173 (259)
                      ...+++.++  .....+|||||||+|.++..++++  ..+++++|+ +.+++.+++   ..++++++.+|+.+ +++.  
T Consensus        39 ~~~Iv~~l~--~~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~  114 (295)
T 3gru_A           39 VNKAVESAN--LTKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKLD  114 (295)
T ss_dssp             HHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSC
T ss_pred             HHHHHHhcC--CCCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccCC
Confidence            345566666  666789999999999999999998  468999999 888888876   35799999999998 6663  


Q ss_pred             ccEEeehhh
Q 041250          174 AYAVLLKWI  182 (259)
Q Consensus       174 ~D~~~~~~v  182 (259)
                      ||+|+.+..
T Consensus       115 fD~Iv~NlP  123 (295)
T 3gru_A          115 FNKVVANLP  123 (295)
T ss_dssp             CSEEEEECC
T ss_pred             ccEEEEeCc
Confidence            898886533

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=98.66  E-value=3.5e-08  Score=87.48  Aligned_cols=99  Identities=13%  Similarity=0.058  Sum_probs=76.8

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCC---C---C-CccEEeeh
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKA---I---S-PAYAVLLK  180 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~---~---~-~~D~~~~~  180 (259)
                      +..+|||+|||+|.++..+++.  ..+++++|+ +.+++.+++     ..++++++.+|.++.   .   + .||+|++.
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~d  286 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD  286 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence            4678999999999999999998  568999999 888888876     335599999999872   1   2 59999985


Q ss_pred             hhhccCCh-------HHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250          181 WILLDWND-------EECVKILKKCKEAITRDGKKRKVIIKDMI  217 (259)
Q Consensus       181 ~vlh~~~d-------~~~~~il~~~~~~L~p~~~gg~lli~e~~  217 (259)
                      ...+..+.       +....+++++.+.|+|   ||.+++....
T Consensus       287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~  327 (382)
T 1wxx_A          287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKE---GGILATASCS  327 (382)
T ss_dssp             CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEE---EEEEEEEECC
T ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEECC
Confidence            33222211       3456789999999999   8988887653

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=98.66  E-value=7.8e-08  Score=85.34  Aligned_cols=113  Identities=12%  Similarity=0.049  Sum_probs=83.9

Q ss_pred             hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCC--------------------------------------CeEE
Q 041250          101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPK--------------------------------------LECT  142 (259)
Q Consensus       101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~--------------------------------------~~~~  142 (259)
                      +..++....  +.+..+|||.+||+|.++++++....+                                      .+++
T Consensus       184 Aa~ll~~~~--~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~  261 (385)
T 3ldu_A          184 AAGLIYLTP--WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIY  261 (385)
T ss_dssp             HHHHHHTSC--CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEE
T ss_pred             HHHHHHhhC--CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEE
Confidence            344555555  566789999999999999999876322                                      5799


Q ss_pred             Eeec-hHHHhhccc------CCCCeEEEeCCCCC-CCC-CccEEeehhhhcc-CC-hHHHHHHHHHHHHhcccCCCCcEE
Q 041250          143 CFDL-PHVVNGLES------DLVNLKYVGGDMFK-AIS-PAYAVLLKWILLD-WN-DEECVKILKKCKEAITRDGKKRKV  211 (259)
Q Consensus       143 ~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~-~~D~~~~~~vlh~-~~-d~~~~~il~~~~~~L~p~~~gg~l  211 (259)
                      ++|+ +.+++.|++      ..++|+|..+|+.+ +.+ .+|+|++.--.+. +. .++...+++.+.+.|++ -+|+++
T Consensus       262 GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~-~~g~~~  340 (385)
T 3ldu_A          262 GYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRK-LKNWSY  340 (385)
T ss_dssp             EEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHT-SBSCEE
T ss_pred             EEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhh-CCCCEE
Confidence            9999 899998887      34589999999998 444 5999998755432 22 34566788888887775 237888


Q ss_pred             EEEee
Q 041250          212 IIKDM  216 (259)
Q Consensus       212 li~e~  216 (259)
                      +|+..
T Consensus       341 ~iit~  345 (385)
T 3ldu_A          341 YLITS  345 (385)
T ss_dssp             EEEES
T ss_pred             EEEEC
Confidence            77754

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=98.62  E-value=4.4e-08  Score=88.56  Aligned_cols=110  Identities=12%  Similarity=0.128  Sum_probs=81.2

Q ss_pred             HHHhcccccCCCCeEEEecCCchHHHHHHHHHCCC-CeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-C--CC-
Q 041250          104 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPK-LECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-A--IS-  172 (259)
Q Consensus       104 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~--~~-  172 (259)
                      +...++  .....+|||+|||+|..+..+++..++ .+++++|+ +..++.+++     ...++.++.+|..+ +  .+ 
T Consensus        97 ~~~~L~--~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~  174 (456)
T 3m4x_A           97 VGTAAA--AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSG  174 (456)
T ss_dssp             HHHHHC--CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTT
T ss_pred             HHHHcC--CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccc
Confidence            344445  556789999999999999999998654 68999999 778877765     45689999999876 2  33 


Q ss_pred             CccEEeehh------hh-------ccCChHH-------HHHHHHHHHHhcccCCCCcEEEEEeeee
Q 041250          173 PAYAVLLKW------IL-------LDWNDEE-------CVKILKKCKEAITRDGKKRKVIIKDMIK  218 (259)
Q Consensus       173 ~~D~~~~~~------vl-------h~~~d~~-------~~~il~~~~~~L~p~~~gg~lli~e~~~  218 (259)
                      .||+|++.-      ++       +.|+.+.       ..++|+++.+.|+|   ||+|+.....+
T Consensus       175 ~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp---GG~LvYsTCs~  237 (456)
T 3m4x_A          175 FFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKN---KGQLIYSTCTF  237 (456)
T ss_dssp             CEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEE---EEEEEEEESCC
T ss_pred             cCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEEeec
Confidence            599998732      22       2233222       23789999999999   89888766544

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=98.61  E-value=5.6e-08  Score=86.32  Aligned_cols=100  Identities=13%  Similarity=0.059  Sum_probs=74.4

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----C-CC-CeEEEeCCCCC--C-C---C-CccEE
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----D-LV-NLKYVGGDMFK--A-I---S-PAYAV  177 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~-~~-ri~~~~~d~~~--~-~---~-~~D~~  177 (259)
                      .+..+|||+|||+|.++..+++.. ..+++++|+ +.+++.|++     . .+ +++|+.+|.++  + .   . .||+|
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~I  289 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII  289 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             cCCCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEE
Confidence            346799999999999999999863 238999999 889988876     2 23 89999999987  2 1   2 59999


Q ss_pred             eehhhh-----ccCCh--HHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          178 LLKWIL-----LDWND--EECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       178 ~~~~vl-----h~~~d--~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      ++....     +...+  +...++++.+.+.|+|   ||.+++...
T Consensus       290 i~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~p---gG~l~~~~~  332 (385)
T 2b78_A          290 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSE---NGLIIASTN  332 (385)
T ss_dssp             EECCCCC-----CCCCHHHHHHHHHHHHHHTEEE---EEEEEEEEC
T ss_pred             EECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeC
Confidence            985332     22222  3345688899999999   787766653

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=98.60  E-value=6.9e-08  Score=85.99  Aligned_cols=100  Identities=11%  Similarity=-0.010  Sum_probs=76.2

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----C--CCCeEEEeCCCCCC-------CCCccEE
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----D--LVNLKYVGGDMFKA-------ISPAYAV  177 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~--~~ri~~~~~d~~~~-------~~~~D~~  177 (259)
                      .+..+|||+|||+|.++..+++.. ..+++++|+ +.+++.|++     .  .++++++.+|+++.       ...||+|
T Consensus       219 ~~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~I  297 (396)
T 3c0k_A          219 VENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI  297 (396)
T ss_dssp             CTTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             hCCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEE
Confidence            346799999999999999999874 458999999 888888876     2  23899999999872       1259999


Q ss_pred             eehhhhccCC-------hHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          178 LLKWILLDWN-------DEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       178 ~~~~vlh~~~-------d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      ++.......+       ......++.++.+.|+|   ||.+++...
T Consensus       298 i~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~  340 (396)
T 3c0k_A          298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNE---GGILLTFSC  340 (396)
T ss_dssp             EECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEE---EEEEEEEEC
T ss_pred             EECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeC
Confidence            9864221111       13456899999999999   888777654

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.59  E-value=1.4e-07  Score=80.35  Aligned_cols=94  Identities=12%  Similarity=0.026  Sum_probs=68.3

Q ss_pred             cCCCCeEEEecC------CchHHHHHHHHHCC-CCeEEEeechHHHhhcccCCCCeEE-EeCCCCC-CCC-CccEEeehh
Q 041250          112 FEGLNSLVDVGG------GTGTAAKAIAKAFP-KLECTCFDLPHVVNGLESDLVNLKY-VGGDMFK-AIS-PAYAVLLKW  181 (259)
Q Consensus       112 ~~~~~~vlDvGg------G~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~~~~ri~~-~~~d~~~-~~~-~~D~~~~~~  181 (259)
                      +....+|||+||      |+|.  ..+++..| +.+++++|+.+.+       .++++ +.+|+.+ +.+ .||+|++..
T Consensus        61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~v-------~~v~~~i~gD~~~~~~~~~fD~Vvsn~  131 (290)
T 2xyq_A           61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDFV-------SDADSTLIGDCATVHTANKWDLIISDM  131 (290)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCCB-------CSSSEEEESCGGGCCCSSCEEEEEECC
T ss_pred             CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCCC-------CCCEEEEECccccCCccCcccEEEEcC
Confidence            566789999999      5577  44566776 6899999994441       37899 9999988 444 599999753


Q ss_pred             hhcc---C------ChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250          182 ILLD---W------NDEECVKILKKCKEAITRDGKKRKVIIKDMI  217 (259)
Q Consensus       182 vlh~---~------~d~~~~~il~~~~~~L~p~~~gg~lli~e~~  217 (259)
                      ..+.   +      ..+....+++.+++.|+|   ||++++..+.
T Consensus       132 ~~~~~g~~~~d~~~~~~l~~~~l~~a~r~Lkp---GG~~v~~~~~  173 (290)
T 2xyq_A          132 YDPRTKHVTKENDSKEGFFTYLCGFIKQKLAL---GGSIAVKITE  173 (290)
T ss_dssp             CCCC---CCSCCCCCCTHHHHHHHHHHHHEEE---EEEEEEEECS
T ss_pred             CccccccccccccchHHHHHHHHHHHHHhcCC---CcEEEEEEec
Confidence            2211   0      123345799999999999   8998886543

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.59  E-value=9.7e-08  Score=81.87  Aligned_cols=78  Identities=17%  Similarity=0.152  Sum_probs=63.9

Q ss_pred             hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCC-C--C-
Q 041250          101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-A--I-  171 (259)
Q Consensus       101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~--~-  171 (259)
                      ...+++.+.  .....+|||+|||+|.++..+++++|+.+++++|. +.+++.|++    ..+|++++.+|+.+ +  . 
T Consensus        15 l~e~l~~L~--~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~   92 (301)
T 1m6y_A           15 VREVIEFLK--PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLK   92 (301)
T ss_dssp             HHHHHHHHC--CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHH
T ss_pred             HHHHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHH
Confidence            455666666  56678999999999999999999999889999999 899988876    22799999999876 2  1 


Q ss_pred             ----CCccEEeeh
Q 041250          172 ----SPAYAVLLK  180 (259)
Q Consensus       172 ----~~~D~~~~~  180 (259)
                          ..+|.|++.
T Consensus        93 ~~g~~~~D~Vl~D  105 (301)
T 1m6y_A           93 TLGIEKVDGILMD  105 (301)
T ss_dssp             HTTCSCEEEEEEE
T ss_pred             hcCCCCCCEEEEc
Confidence                358988864

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=98.58  E-value=6.7e-08  Score=87.40  Aligned_cols=109  Identities=13%  Similarity=0.007  Sum_probs=80.7

Q ss_pred             HHHHhcccccCCCCeEEEecCCchHHHHHHHHHC-------------CCCeEEEeec-hHHHhhccc-----CCC--CeE
Q 041250          103 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAF-------------PKLECTCFDL-PHVVNGLES-----DLV--NLK  161 (259)
Q Consensus       103 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-------------p~~~~~~~D~-~~~~~~a~~-----~~~--ri~  161 (259)
                      .+++.+.  .....+|+|.|||+|.++..+.+..             +..+++++|+ |.++..|+.     ...  ++.
T Consensus       162 ~mv~~l~--~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~  239 (445)
T 2okc_A          162 AMVDCIN--PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSP  239 (445)
T ss_dssp             HHHHHHC--CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCS
T ss_pred             HHHHHhC--CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCC
Confidence            3444443  3445789999999999999998763             4567999999 888888775     222  788


Q ss_pred             EEeCCCCC-CCC-CccEEeehhhhccCCh-H--------------HHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          162 YVGGDMFK-AIS-PAYAVLLKWILLDWND-E--------------ECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       162 ~~~~d~~~-~~~-~~D~~~~~~vlh~~~d-~--------------~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      +..+|.+. +.. .||+|+....++.... +              ....+++++.+.|+|   ||++.++-+
T Consensus       240 i~~gD~l~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~---gG~~a~V~p  308 (445)
T 2okc_A          240 IVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKT---GGRAAVVLP  308 (445)
T ss_dssp             EEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred             EeeCCCCCCcccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhcc---CCEEEEEEC
Confidence            99999998 433 6999998866554221 1              124789999999999   899977764

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=98.56  E-value=1.4e-07  Score=83.99  Aligned_cols=101  Identities=14%  Similarity=0.068  Sum_probs=73.7

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCCC---CC-CccEEeehhhhc
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFKA---IS-PAYAVLLKWILL  184 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~~---~~-~~D~~~~~~vlh  184 (259)
                      ...+|||+|||+|.++..+++..  .+++++|+ +.+++.+++    ..-..++..+|.++.   .+ .||+|++.....
T Consensus       214 ~g~~VLDlg~GtG~~sl~~a~~g--a~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f  291 (393)
T 4dmg_A          214 PGERVLDVYSYVGGFALRAARKG--AYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTL  291 (393)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCC
T ss_pred             CCCeEEEcccchhHHHHHHHHcC--CeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcC
Confidence            36799999999999999999974  45999999 888888876    122235678998872   22 499999864321


Q ss_pred             cCCh-------HHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250          185 DWND-------EECVKILKKCKEAITRDGKKRKVIIKDMIKE  219 (259)
Q Consensus       185 ~~~d-------~~~~~il~~~~~~L~p~~~gg~lli~e~~~~  219 (259)
                      ..+.       ..-.++++.+.+.|+|   ||.|+++.....
T Consensus       292 ~~~~~~~~~~~~~~~~ll~~a~~~Lkp---GG~Lv~~s~s~~  330 (393)
T 4dmg_A          292 VKRPEELPAMKRHLVDLVREALRLLAE---EGFLWLSSCSYH  330 (393)
T ss_dssp             CSSGGGHHHHHHHHHHHHHHHHHTEEE---EEEEEEEECCTT
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEECCCC
Confidence            1111       2235789999999999   898887776443

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.55  E-value=1.8e-07  Score=78.16  Aligned_cols=86  Identities=21%  Similarity=0.282  Sum_probs=64.6

Q ss_pred             hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-CCCCeEEEeCCCCC-CCCC-c-c
Q 041250          101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-DLVNLKYVGGDMFK-AISP-A-Y  175 (259)
Q Consensus       101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri~~~~~d~~~-~~~~-~-D  175 (259)
                      ...+++.++  .....+|||||||+|.++..++++ +..+++++|+ +.+++.+++ ...+++++.+|+.+ +++. + +
T Consensus        20 ~~~iv~~~~--~~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~   96 (249)
T 3ftd_A           20 LKKIAEELN--IEEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCSLGKE   96 (249)
T ss_dssp             HHHHHHHTT--CCTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGGSCSS
T ss_pred             HHHHHHhcC--CCCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhHccCC
Confidence            345566666  566789999999999999999987 4578999999 888888876 35689999999998 5553 1 4


Q ss_pred             EEeehhhhccCChH
Q 041250          176 AVLLKWILLDWNDE  189 (259)
Q Consensus       176 ~~~~~~vlh~~~d~  189 (259)
                      ..++.+.-++.+..
T Consensus        97 ~~vv~NlPy~i~~~  110 (249)
T 3ftd_A           97 LKVVGNLPYNVASL  110 (249)
T ss_dssp             EEEEEECCTTTHHH
T ss_pred             cEEEEECchhccHH
Confidence            45666655554443

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.54  E-value=2.5e-07  Score=78.16  Aligned_cols=90  Identities=17%  Similarity=0.159  Sum_probs=67.5

Q ss_pred             HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc--CCCCeEEEeCCCCC-CCC---Cc
Q 041250          102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES--DLVNLKYVGGDMFK-AIS---PA  174 (259)
Q Consensus       102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~ri~~~~~d~~~-~~~---~~  174 (259)
                      ..+++..+  .... +|||||||+|.++..++++.  .+++++|+ +.+++.+++  ..++++++.+|+.+ +++   .+
T Consensus        37 ~~Iv~~~~--~~~~-~VLEIG~G~G~lt~~L~~~~--~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~~  111 (271)
T 3fut_A           37 RRIVEAAR--PFTG-PVFEVGPGLGALTRALLEAG--AEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQG  111 (271)
T ss_dssp             HHHHHHHC--CCCS-CEEEECCTTSHHHHHHHHTT--CCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCTT
T ss_pred             HHHHHhcC--CCCC-eEEEEeCchHHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhccCc
Confidence            44555555  5556 99999999999999999985  57999999 888888876  34789999999998 554   35


Q ss_pred             cEEeehhhhccCChHHHHHHHHH
Q 041250          175 YAVLLKWILLDWNDEECVKILKK  197 (259)
Q Consensus       175 D~~~~~~vlh~~~d~~~~~il~~  197 (259)
                      |. ++++.-++.+..-..++|..
T Consensus       112 ~~-iv~NlPy~iss~il~~ll~~  133 (271)
T 3fut_A          112 SL-LVANLPYHIATPLVTRLLKT  133 (271)
T ss_dssp             EE-EEEEECSSCCHHHHHHHHHH
T ss_pred             cE-EEecCcccccHHHHHHHhcC
Confidence            65 45555666666555555543

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=98.50  E-value=4.5e-07  Score=81.66  Aligned_cols=91  Identities=14%  Similarity=0.177  Sum_probs=65.9

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCCC-----C--CccEEe
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAI-----S--PAYAVL  178 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~-----~--~~D~~~  178 (259)
                      ..+..+|||+|||+|.++..+++.  ..+++++|+ +.+++.|++     ...+++|+.+|+.+..     +  .||+|+
T Consensus       284 ~~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv  361 (433)
T 1uwv_A          284 VQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVL  361 (433)
T ss_dssp             CCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEE
T ss_pred             CCCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEE
Confidence            455679999999999999999988  578999999 889988876     3358999999998732     2  489998


Q ss_pred             ehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEE
Q 041250          179 LKWILLDWNDEECVKILKKCKEAITRDGKKRKVII  213 (259)
Q Consensus       179 ~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli  213 (259)
                      +.---..     +..+++.+.+ ++|   ++.+++
T Consensus       362 ~dPPr~g-----~~~~~~~l~~-~~p---~~ivyv  387 (433)
T 1uwv_A          362 LDPARAG-----AAGVMQQIIK-LEP---IRIVYV  387 (433)
T ss_dssp             ECCCTTC-----CHHHHHHHHH-HCC---SEEEEE
T ss_pred             ECCCCcc-----HHHHHHHHHh-cCC---CeEEEE
Confidence            7432221     1234555543 677   454443

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.45  E-value=1.8e-07  Score=78.19  Aligned_cols=91  Identities=9%  Similarity=0.091  Sum_probs=63.0

Q ss_pred             hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccC---CCCeEEEeCCCCC-CCCC--
Q 041250          101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESD---LVNLKYVGGDMFK-AISP--  173 (259)
Q Consensus       101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~ri~~~~~d~~~-~~~~--  173 (259)
                      ...+++.++  .....+|||||||+|.++. +. +.++.+++++|+ +.+++.+++.   .++++++.+|+.+ +++.  
T Consensus        10 ~~~iv~~~~--~~~~~~VLEIG~G~G~lt~-l~-~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~~   85 (252)
T 1qyr_A           10 IDSIVSAIN--PQKGQAMVEIGPGLAALTE-PV-GERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELA   85 (252)
T ss_dssp             HHHHHHHHC--CCTTCCEEEECCTTTTTHH-HH-HTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHH
T ss_pred             HHHHHHhcC--CCCcCEEEEECCCCcHHHH-hh-hCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHHhh
Confidence            345566665  5667899999999999999 64 455445999999 8999988872   2589999999988 5442  


Q ss_pred             ----ccEEeehhhhccCChHHHHHHH
Q 041250          174 ----AYAVLLKWILLDWNDEECVKIL  195 (259)
Q Consensus       174 ----~D~~~~~~vlh~~~d~~~~~il  195 (259)
                          .+.+++++.-++.+.....+++
T Consensus        86 ~~~~~~~~vvsNlPY~i~~~il~~ll  111 (252)
T 1qyr_A           86 EKMGQPLRVFGNLPYNISTPLMFHLF  111 (252)
T ss_dssp             HHHTSCEEEEEECCTTTHHHHHHHHH
T ss_pred             cccCCceEEEECCCCCccHHHHHHHH
Confidence                2345555555555444333333

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.43  E-value=1e-07  Score=80.87  Aligned_cols=69  Identities=16%  Similarity=0.275  Sum_probs=56.1

Q ss_pred             HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCC--CeEEEeec-hHHHhhcccC-CCCeEEEeCCCCC-CCC
Q 041250          102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPK--LECTCFDL-PHVVNGLESD-LVNLKYVGGDMFK-AIS  172 (259)
Q Consensus       102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~~-~~ri~~~~~d~~~-~~~  172 (259)
                      ..+++.++  .....+|||||||+|.++..++++.+.  .+++++|+ +.+++.+++. .++++++.+|+.+ +++
T Consensus        32 ~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~  105 (279)
T 3uzu_A           32 DAIVAAIR--PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTFDFG  105 (279)
T ss_dssp             HHHHHHHC--CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGCCGG
T ss_pred             HHHHHhcC--CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcCChh
Confidence            44555555  566789999999999999999998654  55999999 8888888763 5789999999998 554

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=98.43  E-value=8.6e-07  Score=79.62  Aligned_cols=91  Identities=12%  Similarity=0.083  Sum_probs=67.3

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCCCC-CccEEeehhhhcc
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAIS-PAYAVLLKWILLD  185 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~~-~~D~~~~~~vlh~  185 (259)
                      .+..+|||+|||+|.++..+++.  ..+++++|+ +.+++.|++     ... ++|+.+|+.+..+ .||+|++...-..
T Consensus       289 ~~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~~fD~Vv~dPPr~g  365 (425)
T 2jjq_A          289 VEGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVKGFDTVIVDPPRAG  365 (425)
T ss_dssp             CCSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCTTCSEEEECCCTTC
T ss_pred             CCCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCccCCCEEEEcCCccc
Confidence            44679999999999999999987  458999999 889988876     234 9999999998444 6999998543222


Q ss_pred             CChHHHHHHHHHHHHhcccCCCCcEEEEE
Q 041250          186 WNDEECVKILKKCKEAITRDGKKRKVIIK  214 (259)
Q Consensus       186 ~~d~~~~~il~~~~~~L~p~~~gg~lli~  214 (259)
                      .. +   .+++.+. .++|   +|.+++.
T Consensus       366 ~~-~---~~~~~l~-~l~p---~givyvs  386 (425)
T 2jjq_A          366 LH-P---RLVKRLN-REKP---GVIVYVS  386 (425)
T ss_dssp             SC-H---HHHHHHH-HHCC---SEEEEEE
T ss_pred             hH-H---HHHHHHH-hcCC---CcEEEEE
Confidence            22 1   3455444 4898   7766664

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.43  E-value=6.5e-07  Score=85.30  Aligned_cols=99  Identities=9%  Similarity=0.081  Sum_probs=75.0

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CC-CCeEEEeCCCCCC---CC-CccEEeehh
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DL-VNLKYVGGDMFKA---IS-PAYAVLLKW  181 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~-~ri~~~~~d~~~~---~~-~~D~~~~~~  181 (259)
                      ...+|||+|||+|.++..+++.. ..+++++|+ +.+++.+++      .. ++++++.+|.++.   .. .||+|++..
T Consensus       539 ~g~~VLDlg~GtG~~sl~aa~~g-a~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DP  617 (703)
T 3v97_A          539 KGKDFLNLFSYTGSATVHAGLGG-ARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDP  617 (703)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECC
T ss_pred             CCCcEEEeeechhHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECC
Confidence            45799999999999999998853 236999999 888988876      22 5899999999872   22 599999854


Q ss_pred             hhc--------cCC-hHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          182 ILL--------DWN-DEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       182 vlh--------~~~-d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      ...        .+. ...-.++++.+.+.|+|   ||.|++...
T Consensus       618 P~f~~~~~~~~~~~~~~~~~~ll~~a~~~Lkp---gG~L~~s~~  658 (703)
T 3v97_A          618 PTFSNSKRMEDAFDVQRDHLALMKDLKRLLRA---GGTIMFSNN  658 (703)
T ss_dssp             CSBC-------CCBHHHHHHHHHHHHHHHEEE---EEEEEEEEC
T ss_pred             ccccCCccchhHHHHHHHHHHHHHHHHHhcCC---CcEEEEEEC
Confidence            221        122 13456789999999999   888775543

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.42  E-value=2.8e-07  Score=77.17  Aligned_cols=68  Identities=15%  Similarity=0.242  Sum_probs=56.1

Q ss_pred             hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEeCCCCC-CCC
Q 041250          101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFK-AIS  172 (259)
Q Consensus       101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~-~~~  172 (259)
                      ...+++..+  .....+|||||||+|.++..++++.  .+++++|+ +.+++.+++   ..++++++.+|+.+ +++
T Consensus        18 ~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~   90 (255)
T 3tqs_A           18 LQKIVSAIH--PQKTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFS   90 (255)
T ss_dssp             HHHHHHHHC--CCTTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGG
T ss_pred             HHHHHHhcC--CCCcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHH
Confidence            345666666  6667899999999999999999884  68999999 889988876   34799999999998 543

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.39  E-value=8.1e-07  Score=75.55  Aligned_cols=100  Identities=14%  Similarity=0.127  Sum_probs=76.1

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----------CCCCeEEEeCCCCCCC----CCccE
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----------DLVNLKYVGGDMFKAI----SPAYA  176 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~ri~~~~~d~~~~~----~~~D~  176 (259)
                      .+++.+||=||||.|..+.++++..|..+++++|+ |.+++.+++          ..+|++++.+|.++-.    ..||+
T Consensus        81 ~p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDv  160 (294)
T 3o4f_A           81 HGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDV  160 (294)
T ss_dssp             SSCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEE
T ss_pred             CCCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCE
Confidence            35678999999999999999998777778999999 999998876          3589999999999822    25999


Q ss_pred             EeehhhhccCChH--HHHHHHHHHHHhcccCCCCcEEEEE
Q 041250          177 VLLKWILLDWNDE--ECVKILKKCKEAITRDGKKRKVIIK  214 (259)
Q Consensus       177 ~~~~~vlh~~~d~--~~~~il~~~~~~L~p~~~gg~lli~  214 (259)
                      |++-..=-.-+.+  -....++.++++|+|   ||.++..
T Consensus       161 Ii~D~~dp~~~~~~L~t~eFy~~~~~~L~p---~Gv~v~q  197 (294)
T 3o4f_A          161 IISDCTDPIGPGESLFTSAFYEGCKRCLNP---GGIFVAQ  197 (294)
T ss_dssp             EEESCCCCCCTTCCSSCCHHHHHHHHTEEE---EEEEEEE
T ss_pred             EEEeCCCcCCCchhhcCHHHHHHHHHHhCC---CCEEEEe
Confidence            9865321100110  123689999999999   7766654

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=98.38  E-value=6.1e-06  Score=72.65  Aligned_cols=103  Identities=18%  Similarity=0.237  Sum_probs=73.1

Q ss_pred             CCeEEEecCCchHHHHHH--------HHHC-------CCCeEEEeechHH--------Hhhccc----------C---CC
Q 041250          115 LNSLVDVGGGTGTAAKAI--------AKAF-------PKLECTCFDLPHV--------VNGLES----------D---LV  158 (259)
Q Consensus       115 ~~~vlDvGgG~G~~~~~l--------~~~~-------p~~~~~~~D~~~~--------~~~a~~----------~---~~  158 (259)
                      ..+|+|+|||+|..+..+        .+++       |.+++..-|+|.-        ++..++          .   .-
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~  132 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY  132 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence            578999999999998887        3333       7889999999621        122211          0   01


Q ss_pred             CeEEEeCCCCC-CCC--CccEEeehhhhccCCh------------------------------------HHHHHHHHHHH
Q 041250          159 NLKYVGGDMFK-AIS--PAYAVLLKWILLDWND------------------------------------EECVKILKKCK  199 (259)
Q Consensus       159 ri~~~~~d~~~-~~~--~~D~~~~~~vlh~~~d------------------------------------~~~~~il~~~~  199 (259)
                      =+.-+++.|.. .+|  .+|+++.+.+||-.++                                    .+-..+|+..+
T Consensus       133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra  212 (374)
T 3b5i_A          133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA  212 (374)
T ss_dssp             EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            13446788888 566  5999999999996551                                    13345799999


Q ss_pred             HhcccCCCCcEEEEEeeeecC
Q 041250          200 EAITRDGKKRKVIIKDMIKEN  220 (259)
Q Consensus       200 ~~L~p~~~gg~lli~e~~~~~  220 (259)
                      +.|+|   ||++++.-...++
T Consensus       213 ~eL~p---GG~mvl~~~gr~~  230 (374)
T 3b5i_A          213 AEVKR---GGAMFLVCLGRTS  230 (374)
T ss_dssp             HHEEE---EEEEEEEEEECCC
T ss_pred             HHhCC---CCEEEEEEecCCC
Confidence            99999   8988877776554

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.36  E-value=1.5e-06  Score=82.89  Aligned_cols=110  Identities=11%  Similarity=0.022  Sum_probs=79.2

Q ss_pred             HHHHHhcccccCCCCeEEEecCCchHHHHHHHHH------------------------------------------CCCC
Q 041250          102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKA------------------------------------------FPKL  139 (259)
Q Consensus       102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~------------------------------------------~p~~  139 (259)
                      ..++....  +.+..+|+|.+||+|.++++.+..                                          .|+.
T Consensus       180 a~ll~~~~--~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~  257 (703)
T 3v97_A          180 AAIVMRSG--WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSS  257 (703)
T ss_dssp             HHHHHHTT--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHhhC--CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCc
Confidence            44555555  556778999999999999998864                                          2346


Q ss_pred             eEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-CCC----CccEEeehhhhcc-C-ChHHHHHHHHHHHHhcc--
Q 041250          140 ECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AIS----PAYAVLLKWILLD-W-NDEECVKILKKCKEAIT--  203 (259)
Q Consensus       140 ~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~----~~D~~~~~~vlh~-~-~d~~~~~il~~~~~~L~--  203 (259)
                      +++++|+ +.+++.|++      ..++|+|..+|+.+ ..|    .+|+|+++--... + .+++...+.+.+.+.++  
T Consensus       258 ~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~  337 (703)
T 3v97_A          258 HFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQ  337 (703)
T ss_dssp             CEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhh
Confidence            8999999 999998887      34679999999987 222    5899998854332 2 23445566666655554  


Q ss_pred             -cCCCCcEEEEEee
Q 041250          204 -RDGKKRKVIIKDM  216 (259)
Q Consensus       204 -p~~~gg~lli~e~  216 (259)
                       |   ||+++|+..
T Consensus       338 ~~---g~~~~ilt~  348 (703)
T 3v97_A          338 FG---GWNLSLFSA  348 (703)
T ss_dssp             CT---TCEEEEEES
T ss_pred             CC---CCeEEEEeC
Confidence             6   899888754

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.29  E-value=8.2e-07  Score=83.04  Aligned_cols=123  Identities=10%  Similarity=0.052  Sum_probs=81.3

Q ss_pred             hhcCchHHHHHHHHHHhcchhhhHHHHHhcccc--cCCCCeEEEecCCchHHHHHHHH---H-CCCCeEEEeechHHHhh
Q 041250           79 AGDESKLNNFFNEAMASDARLATSVMIQKCKNV--FEGLNSLVDVGGGTGTAAKAIAK---A-FPKLECTCFDLPHVVNG  152 (259)
Q Consensus        79 l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~--~~~~~~vlDvGgG~G~~~~~l~~---~-~p~~~~~~~D~~~~~~~  152 (259)
                      ++++|-.-+.|.+|+..       .+.+.....  ..+...|+|||||+|-++...++   + .-++++..++-.++...
T Consensus       327 FEkD~vKy~~Ye~AI~~-------Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~~  399 (637)
T 4gqb_A          327 FEKDPIKYSQYQQAIYK-------CLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAVV  399 (637)
T ss_dssp             HTTCHHHHHHHHHHHHH-------HHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHHH
T ss_pred             hcCChhhHHHHHHHHHH-------HHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHHH
Confidence            44555555566665532       233322211  12345799999999999544433   3 23347889998556655


Q ss_pred             ccc------CCCCeEEEeCCCCC-CCC-CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEE
Q 041250          153 LES------DLVNLKYVGGDMFK-AIS-PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKV  211 (259)
Q Consensus       153 a~~------~~~ri~~~~~d~~~-~~~-~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~l  211 (259)
                      +++      ..++|+++.+|+.+ ..| ++|+++.-+.=+..-.|-...+|-...+-|+|   ||.+
T Consensus       400 a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKP---gGim  463 (637)
T 4gqb_A          400 TLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVSELLGSFADNELSPECLDGAQHFLKD---DGVS  463 (637)
T ss_dssp             HHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEE---EEEE
T ss_pred             HHHHHHhccCCCeEEEEeCcceeccCCcccCEEEEEcCcccccccCCHHHHHHHHHhcCC---CcEE
Confidence            554      67999999999999 777 69999877655555455566777777788999   7754

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=98.26  E-value=2.6e-05  Score=67.72  Aligned_cols=104  Identities=16%  Similarity=0.153  Sum_probs=87.5

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhccc----C----------------------CCCeEEEeCC
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES----D----------------------LVNLKYVGGD  166 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~----~----------------------~~ri~~~~~d  166 (259)
                      .+...||.+|||.......+...+|+++++-+|+|++++.-++    .                      .++..++..|
T Consensus        96 ~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D  175 (334)
T 1rjd_A           96 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD  175 (334)
T ss_dssp             CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred             CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence            3567899999999999999999989999999999998876544    1                      3789999999


Q ss_pred             CCC-CC----------C-CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecC
Q 041250          167 MFK-AI----------S-PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKEN  220 (259)
Q Consensus       167 ~~~-~~----------~-~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~  220 (259)
                      +.+ .+          + ...+++.--+|++++.+++.++|+.+.+.. |   +|.+++.|.+.+.
T Consensus       176 L~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~---~~~~v~~e~i~~~  237 (334)
T 1rjd_A          176 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-S---HGLWISYDPIGGS  237 (334)
T ss_dssp             TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-S---SEEEEEEEECCCC
T ss_pred             CCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-C---CcEEEEEeccCCC
Confidence            987 32          1 256778889999999999999999999987 5   6888899998873

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.23  E-value=2.1e-06  Score=71.97  Aligned_cols=72  Identities=15%  Similarity=0.181  Sum_probs=55.7

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-h-------HHHhhccc------CCCCeEEEeCCCCC--C-C---
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-P-------HVVNGLES------DLVNLKYVGGDMFK--A-I---  171 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~-------~~~~~a~~------~~~ri~~~~~d~~~--~-~---  171 (259)
                      .....+|||+|||+|..+..+++.  +.+++++|+ |       .+++.+++      ...|++++.+|..+  + +   
T Consensus        81 ~~~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~  158 (258)
T 2r6z_A           81 HTAHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKT  158 (258)
T ss_dssp             GGGCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHH
T ss_pred             cCCcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhcc
Confidence            444578999999999999999996  568999999 7       77777765      23579999999976  2 2   


Q ss_pred             -CCccEEeehhhhcc
Q 041250          172 -SPAYAVLLKWILLD  185 (259)
Q Consensus       172 -~~~D~~~~~~vlh~  185 (259)
                       ..||+|++...++.
T Consensus       159 ~~~fD~V~~dP~~~~  173 (258)
T 2r6z_A          159 QGKPDIVYLDPMYPE  173 (258)
T ss_dssp             HCCCSEEEECCCC--
T ss_pred             CCCccEEEECCCCCC
Confidence             35999998655443

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=98.20  E-value=2.9e-06  Score=74.99  Aligned_cols=93  Identities=12%  Similarity=0.014  Sum_probs=72.4

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----C---------------C-CCeEEEeCCCCCC--
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----D---------------L-VNLKYVGGDMFKA--  170 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~---------------~-~ri~~~~~d~~~~--  170 (259)
                      ...+|||+|||+|..++.++++.|..+++++|+ +.+++.+++    .               . .+++++.+|..+.  
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~  126 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  126 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence            367899999999999999999988889999999 888887775    2               2 2389999998762  


Q ss_pred             -CC-CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250          171 -IS-PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKD  215 (259)
Q Consensus       171 -~~-~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e  215 (259)
                       .+ .||+|++.- .  ..   ...++..+.+.++|   ||.+++.-
T Consensus       127 ~~~~~fD~I~lDP-~--~~---~~~~l~~a~~~lk~---gG~l~vt~  164 (378)
T 2dul_A          127 ERHRYFHFIDLDP-F--GS---PMEFLDTALRSAKR---RGILGVTA  164 (378)
T ss_dssp             HSTTCEEEEEECC-S--SC---CHHHHHHHHHHEEE---EEEEEEEE
T ss_pred             hccCCCCEEEeCC-C--CC---HHHHHHHHHHhcCC---CCEEEEEe
Confidence             23 599998543 1  11   24688999999999   88766653

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=98.20  E-value=1.2e-05  Score=70.84  Aligned_cols=141  Identities=11%  Similarity=0.118  Sum_probs=86.5

Q ss_pred             CCeEEEecCCchHHHHHHHHH-----------------CCCCeEEEeech-----------H-HHhhccc-CC--CCeE-
Q 041250          115 LNSLVDVGGGTGTAAKAIAKA-----------------FPKLECTCFDLP-----------H-VVNGLES-DL--VNLK-  161 (259)
Q Consensus       115 ~~~vlDvGgG~G~~~~~l~~~-----------------~p~~~~~~~D~~-----------~-~~~~a~~-~~--~ri~-  161 (259)
                      .-+|+|+|||+|..+..+...                 .|.++++.-|+|           + ..+..++ ..  .+-. 
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f  132 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL  132 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence            578999999999999988766                 577889999997           1 1111111 11  1223 


Q ss_pred             --EEeCCCCC-CCC--CccEEeehhhhccCChH-------------------------HHH------------HHHHHHH
Q 041250          162 --YVGGDMFK-AIS--PAYAVLLKWILLDWNDE-------------------------ECV------------KILKKCK  199 (259)
Q Consensus       162 --~~~~d~~~-~~~--~~D~~~~~~vlh~~~d~-------------------------~~~------------~il~~~~  199 (259)
                        -+++.|+. .+|  .+|+++.+.+||-.++-                         .+.            .+|+..+
T Consensus       133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra  212 (384)
T 2efj_A          133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS  212 (384)
T ss_dssp             EEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence              35678887 566  49999999999943321                         122            2378889


Q ss_pred             HhcccCCCCcEEEEEeeeecCC--CCCchhhhhhhhhhhhhhh----------ccCccccCHHHHHHHHhc
Q 041250          200 EAITRDGKKRKVIIKDMIKENR--KKDYKSIETQLFFEMFMMV----------LLTGTERDEKEWAKIFAD  258 (259)
Q Consensus       200 ~~L~p~~~gg~lli~e~~~~~~--~~~~~~~~~~~~~d~~m~~----------~~~g~~rt~~e~~~ll~~  258 (259)
                      +.|+|   ||++++.-...+..  ...........+.++..--          ..--..++.+|++.++++
T Consensus       213 ~eL~p---GG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~  280 (384)
T 2efj_A          213 EELIS---RGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEE  280 (384)
T ss_dssp             HHEEE---EEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHH
T ss_pred             HHhcc---CCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHH
Confidence            99999   88887777655443  2110000112233321110          012345889999999875

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=98.18  E-value=1.7e-06  Score=76.21  Aligned_cols=89  Identities=9%  Similarity=0.107  Sum_probs=65.7

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCC---C--------------
Q 041250          115 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKA---I--------------  171 (259)
Q Consensus       115 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~---~--------------  171 (259)
                      ..+|||+|||+|.++..+++..  .+++++|+ +.+++.|++     ..++++|+.+|..+.   .              
T Consensus       214 ~~~vLDl~cG~G~~~l~la~~~--~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~  291 (369)
T 3bt7_A          214 KGDLLELYCGNGNFSLALARNF--DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDL  291 (369)
T ss_dssp             CSEEEEESCTTSHHHHHHGGGS--SEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCG
T ss_pred             CCEEEEccCCCCHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhcccccccccccc
Confidence            4689999999999999988753  48999999 889988876     346899999998761   1              


Q ss_pred             --CCccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          172 --SPAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       172 --~~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                        ..||+|++..--.        .+..++.+.|++   +|+|+.+..
T Consensus       292 ~~~~fD~Vv~dPPr~--------g~~~~~~~~l~~---~g~ivyvsc  327 (369)
T 3bt7_A          292 KSYQCETIFVDPPRS--------GLDSETEKMVQA---YPRILYISC  327 (369)
T ss_dssp             GGCCEEEEEECCCTT--------CCCHHHHHHHTT---SSEEEEEES
T ss_pred             ccCCCCEEEECcCcc--------ccHHHHHHHHhC---CCEEEEEEC
Confidence              1589988743211        233445555667   788887764

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=98.12  E-value=1.5e-05  Score=68.56  Aligned_cols=68  Identities=13%  Similarity=0.181  Sum_probs=55.6

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-CC-----CCccEEe
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AI-----SPAYAVL  178 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~~-----~~~D~~~  178 (259)
                      .....+|||+|||+|..+..+++.. +..+++++|+ +..++.+++     ...+++++.+|+.+ +.     ..||.|+
T Consensus       100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl  179 (309)
T 2b9e_A          100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL  179 (309)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred             CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEE
Confidence            5567899999999999999999874 5679999999 788877765     34689999999876 21     2589998


Q ss_pred             e
Q 041250          179 L  179 (259)
Q Consensus       179 ~  179 (259)
                      +
T Consensus       180 ~  180 (309)
T 2b9e_A          180 L  180 (309)
T ss_dssp             E
T ss_pred             E
Confidence            7

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.05  E-value=1.3e-05  Score=74.04  Aligned_cols=108  Identities=11%  Similarity=0.011  Sum_probs=77.4

Q ss_pred             HHHhcccccCCCCeEEEecCCchHHHHHHHHHCC------------------CCeEEEeec-hHHHhhccc-----CCCC
Q 041250          104 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFP------------------KLECTCFDL-PHVVNGLES-----DLVN  159 (259)
Q Consensus       104 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p------------------~~~~~~~D~-~~~~~~a~~-----~~~r  159 (259)
                      +++.+.  .....+|+|.|||+|.++..+.+...                  ..+++++|+ +.++..|+.     ....
T Consensus       161 mv~~l~--p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~  238 (541)
T 2ar0_A          161 IIHLLK--PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEG  238 (541)
T ss_dssp             HHHHHC--CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCC
T ss_pred             HHHHhc--cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCc
Confidence            344443  34457999999999999999877531                  247999999 888888775     2232


Q ss_pred             -----eEEEeCCCCC-C---CCCccEEeehhhhccCC------------hHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          160 -----LKYVGGDMFK-A---ISPAYAVLLKWILLDWN------------DEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       160 -----i~~~~~d~~~-~---~~~~D~~~~~~vlh~~~------------d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                           +.+..+|.+. +   ...||+|+..-.+....            .......++++.+.|+|   ||++.++-+
T Consensus       239 ~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~---gGr~a~V~p  313 (541)
T 2ar0_A          239 NLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHP---GGRAAVVVP  313 (541)
T ss_dssp             BGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred             cccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCC---CCEEEEEec
Confidence                 7899999987 3   23699999876544321            11224689999999999   899877754

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=98.05  E-value=4.2e-06  Score=74.18  Aligned_cols=93  Identities=10%  Similarity=-0.030  Sum_probs=71.9

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCC-CeEEEeec-hHHHhhccc------CCCC-eEEEeCCCCC--C--CC-CccEEee
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAFPK-LECTCFDL-PHVVNGLES------DLVN-LKYVGGDMFK--A--IS-PAYAVLL  179 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~r-i~~~~~d~~~--~--~~-~~D~~~~  179 (259)
                      +..+|||++||+|.+++.++++.++ .+++.+|+ +.+++.+++      ..++ ++++.+|.++  .  .+ .||+|++
T Consensus        52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l  131 (392)
T 3axs_A           52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL  131 (392)
T ss_dssp             SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred             CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence            4578999999999999999998766 47999999 888888876      2345 9999999876  2  23 5999998


Q ss_pred             hhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250          180 KWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKD  215 (259)
Q Consensus       180 ~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e  215 (259)
                      .-  +..+    ..++..+.+.|+|   ||.|++.-
T Consensus       132 DP--~g~~----~~~l~~a~~~Lk~---gGll~~t~  158 (392)
T 3axs_A          132 DP--FGTP----VPFIESVALSMKR---GGILSLTA  158 (392)
T ss_dssp             CC--SSCC----HHHHHHHHHHEEE---EEEEEEEE
T ss_pred             CC--CcCH----HHHHHHHHHHhCC---CCEEEEEe
Confidence            75  1111    3588899999999   78665544

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.05  E-value=1e-05  Score=67.67  Aligned_cols=104  Identities=11%  Similarity=0.014  Sum_probs=65.1

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhh-ccc---CCCCeEEEeCCCCC-CCC--CccEEeehhhhc
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNG-LES---DLVNLKYVGGDMFK-AIS--PAYAVLLKWILL  184 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~-a~~---~~~ri~~~~~d~~~-~~~--~~D~~~~~~vlh  184 (259)
                      +....+|||+|||+|.++..++++.+-.+++++|+..-+.. ...   ...++.....++.. .++  .+|+|++....+
T Consensus        72 l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DlVlsD~apn  151 (277)
T 3evf_A           72 VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVKCDTLLCDIGES  151 (277)
T ss_dssp             SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCCCC
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCCCccEEEecCccC
Confidence            56677999999999999999888766556777776311111 111   11134444444321 333  599999876555


Q ss_pred             ---cCChH-HHHHHHHHHHHhcccCCCC-cEEEEEeeeec
Q 041250          185 ---DWNDE-ECVKILKKCKEAITRDGKK-RKVIIKDMIKE  219 (259)
Q Consensus       185 ---~~~d~-~~~~il~~~~~~L~p~~~g-g~lli~e~~~~  219 (259)
                         .|-|+ ....+|+.+.+.|+|   | |.+++ ..+.|
T Consensus       152 sG~~~~D~~rs~~LL~~a~~~Lkp---G~G~FV~-KVf~p  187 (277)
T 3evf_A          152 SSSSVTEGERTVRVLDTVEKWLAC---GVDNFCV-KVLAP  187 (277)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHTT---CCSEEEE-EESCT
T ss_pred             cCchHHHHHHHHHHHHHHHHHhCC---CCCeEEE-EecCC
Confidence               12232 233568889999999   8 87666 55443

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.04  E-value=4.5e-06  Score=78.33  Aligned_cols=124  Identities=12%  Similarity=0.067  Sum_probs=80.5

Q ss_pred             chhhcCchHHHHHHHHHHhcchhhhHHHHHhcccccCCCCeEEEecCCchHHHHHHHHH----C---------CCCeEEE
Q 041250           77 EYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKA----F---------PKLECTC  143 (259)
Q Consensus        77 ~~l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~----~---------p~~~~~~  143 (259)
                      +.+++++-.-+.|.+++...       +.+.... -.+...|+|||||+|-++...+++    .         ...++++
T Consensus       380 e~fekD~vRy~~Y~~AI~~a-------l~d~~~~-~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyA  451 (745)
T 3ua3_A          380 NTFEQDQIKYDVYGEAVVGA-------LKDLGAD-GRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYI  451 (745)
T ss_dssp             HHHHHCHHHHHHHHHHHHHH-------HHHHHTT-CCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEE
T ss_pred             HHHcCChhhHHHHHHHHHHH-------HHHhhcc-cCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEE
Confidence            33455666666666665442       1111110 123468999999999997543222    1         2348999


Q ss_pred             eec-hHHHhhccc-----CCCCeEEEeCCCCC-CC------C-CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCc
Q 041250          144 FDL-PHVVNGLES-----DLVNLKYVGGDMFK-AI------S-PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKR  209 (259)
Q Consensus       144 ~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~~------~-~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg  209 (259)
                      +|- |.++...+.     ..++|+++.+|+.+ ..      | ++|+++.-..=++...|-....|..+.+-|+|   ||
T Consensus       452 VEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp---~G  528 (745)
T 3ua3_A          452 VEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKP---TT  528 (745)
T ss_dssp             EECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCT---TC
T ss_pred             EeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCC---Cc
Confidence            998 444433332     56889999999998 55      4 69999877765544556566678888889999   77


Q ss_pred             EE
Q 041250          210 KV  211 (259)
Q Consensus       210 ~l  211 (259)
                      .+
T Consensus       529 i~  530 (745)
T 3ua3_A          529 IS  530 (745)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=98.03  E-value=3.4e-05  Score=67.44  Aligned_cols=143  Identities=11%  Similarity=0.087  Sum_probs=88.2

Q ss_pred             CCCCeEEEecCCchHHHHHHHHH----------------CCCCeEEEeech-HHHhhccc-CC-----CC---eEEEeCC
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKA----------------FPKLECTCFDLP-HVVNGLES-DL-----VN---LKYVGGD  166 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~----------------~p~~~~~~~D~~-~~~~~a~~-~~-----~r---i~~~~~d  166 (259)
                      ++.-+|+|+||++|..+..+...                .|.++++.-|+| ......-+ ..     .+   +.-+++.
T Consensus        50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgS  129 (359)
T 1m6e_X           50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGS  129 (359)
T ss_dssp             SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred             CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchh
Confidence            44568999999999776654332                577789999995 22222222 11     12   2336788


Q ss_pred             CCC-CCC--CccEEeehhhhccCCh-------------------------------HHHHHHHHHHHHhcccCCCCcEEE
Q 041250          167 MFK-AIS--PAYAVLLKWILLDWND-------------------------------EECVKILKKCKEAITRDGKKRKVI  212 (259)
Q Consensus       167 ~~~-~~~--~~D~~~~~~vlh~~~d-------------------------------~~~~~il~~~~~~L~p~~~gg~ll  212 (259)
                      |+. .+|  .+|+++.+..||-.++                               .+-..+|+..++.|+|   ||+++
T Consensus       130 Fy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~p---GG~mv  206 (359)
T 1m6e_X          130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVP---GGRMV  206 (359)
T ss_dssp             SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCT---TCEEE
T ss_pred             hhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CceEE
Confidence            888 566  4999999999994432                               1234569999999999   99988


Q ss_pred             EEeeeecCCCCCch-----hh-hhhhhhhhhhhh----------ccCccccCHHHHHHHHhc
Q 041250          213 IKDMIKENRKKDYK-----SI-ETQLFFEMFMMV----------LLTGTERDEKEWAKIFAD  258 (259)
Q Consensus       213 i~e~~~~~~~~~~~-----~~-~~~~~~d~~m~~----------~~~g~~rt~~e~~~ll~~  258 (259)
                      +.-...+.......     +. ...++.|+..--          ..--..++.+|++.++++
T Consensus       207 l~~~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie~  268 (359)
T 1m6e_X          207 LTILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILK  268 (359)
T ss_dssp             EEEEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHH
T ss_pred             EEEecCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHHH
Confidence            87776655421100     00 011222221110          012356889999999876

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.02  E-value=1.7e-05  Score=60.07  Aligned_cols=85  Identities=21%  Similarity=0.200  Sum_probs=60.0

Q ss_pred             cCCCCeEEEecCCch-HHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCCCCC----CccEEeehhhhcc
Q 041250          112 FEGLNSLVDVGGGTG-TAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKAIS----PAYAVLLKWILLD  185 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~~----~~D~~~~~~vlh~  185 (259)
                      .....++||||||+| ..+..|++. .+..+++.|+ |..++          ++..|+|+|..    +||+|...+    
T Consensus        33 ~~~~~rVlEVG~G~g~~vA~~La~~-~g~~V~atDInp~Av~----------~v~dDiF~P~~~~Y~~~DLIYsir----   97 (153)
T 2k4m_A           33 SGPGTRVVEVGAGRFLYVSDYIRKH-SKVDLVLTDIKPSHGG----------IVRDDITSPRMEIYRGAALIYSIR----   97 (153)
T ss_dssp             SCSSSEEEEETCTTCCHHHHHHHHH-SCCEEEEECSSCSSTT----------EECCCSSSCCHHHHTTEEEEEEES----
T ss_pred             CCCCCcEEEEccCCChHHHHHHHHh-CCCeEEEEECCccccc----------eEEccCCCCcccccCCcCEEEEcC----
Confidence            344679999999999 688888874 2688999998 65554          88899999654    689886553    


Q ss_pred             CChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250          186 WNDEECVKILKKCKEAITRDGKKRKVIIKDMI  217 (259)
Q Consensus       186 ~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~  217 (259)
                       |+.+...-+.++++..     |.-++|.-..
T Consensus        98 -PP~El~~~i~~lA~~v-----~adliI~pL~  123 (153)
T 2k4m_A           98 -PPAEIHSSLMRVADAV-----GARLIIKPLT  123 (153)
T ss_dssp             -CCTTTHHHHHHHHHHH-----TCEEEEECBT
T ss_pred             -CCHHHHHHHHHHHHHc-----CCCEEEEcCC
Confidence             3344555566666665     3556665443

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=97.94  E-value=9.6e-06  Score=67.97  Aligned_cols=107  Identities=17%  Similarity=0.138  Sum_probs=68.2

Q ss_pred             hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeech-HHHhhccc---CCCC-eEEEeC-CCCC-CCCC
Q 041250          101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLP-HVVNGLES---DLVN-LKYVGG-DMFK-AISP  173 (259)
Q Consensus       101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~---~~~r-i~~~~~-d~~~-~~~~  173 (259)
                      ...+.+.+.  +....+|||+|||.|.++..++++.+-.+++++|+. .....+..   ...+ +.+... |++. +...
T Consensus        79 L~ei~eK~~--Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~  156 (282)
T 3gcz_A           79 LRWMEERGY--VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFNMEVIP  156 (282)
T ss_dssp             HHHHHHTTS--CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGGSCCCC
T ss_pred             HHHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchhhcCCCC
Confidence            345556653  666779999999999999999988776678888883 22111111   1223 334333 5443 2225


Q ss_pred             ccEEeehhhhccCC----hH-HHHHHHHHHHHhcccCCCC--cEEEE
Q 041250          174 AYAVLLKWILLDWN----DE-ECVKILKKCKEAITRDGKK--RKVII  213 (259)
Q Consensus       174 ~D~~~~~~vlh~~~----d~-~~~~il~~~~~~L~p~~~g--g~lli  213 (259)
                      +|+|++-...+ -.    |+ ....+|+-+.+.|+|   |  |.+++
T Consensus       157 ~DvVLSDmApn-sG~~~~D~~rs~~LL~~A~~~Lk~---g~~G~Fv~  199 (282)
T 3gcz_A          157 GDTLLCDIGES-SPSIAVEEQRTLRVLNCAKQWLQE---GNYTEFCI  199 (282)
T ss_dssp             CSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHHH---HCCCEEEE
T ss_pred             cCEEEecCccC-CCChHHHHHHHHHHHHHHHHHcCC---CCCCcEEE
Confidence            99999876665 21    22 233568888899999   7  77655

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=97.82  E-value=2.3e-05  Score=65.55  Aligned_cols=80  Identities=18%  Similarity=0.228  Sum_probs=58.7

Q ss_pred             HHHHHhcccccCCC--CeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHH-------Hhhccc----C--C-CCeEEEe
Q 041250          102 SVMIQKCKNVFEGL--NSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHV-------VNGLES----D--L-VNLKYVG  164 (259)
Q Consensus       102 ~~~~~~~~~~~~~~--~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~-------~~~a~~----~--~-~ri~~~~  164 (259)
                      ..+.+.+.  ..+.  .+|||+|||+|..+..++++  +.+++++|. |.+       ++.+++    .  . .|++++.
T Consensus        76 e~l~~al~--l~~g~~~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~  151 (258)
T 2oyr_A           76 EAVAKAVG--IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH  151 (258)
T ss_dssp             SHHHHHTT--CBTTBCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEE
T ss_pred             HHHHHHhc--ccCCCCCEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEE
Confidence            44555555  5555  79999999999999999998  568999999 544       333321    1  1 6899999


Q ss_pred             CCCCC--C-CC-CccEEeehhhhcc
Q 041250          165 GDMFK--A-IS-PAYAVLLKWILLD  185 (259)
Q Consensus       165 ~d~~~--~-~~-~~D~~~~~~vlh~  185 (259)
                      +|..+  + .+ .||+|++...++.
T Consensus       152 ~D~~~~L~~~~~~fDvV~lDP~y~~  176 (258)
T 2oyr_A          152 ASSLTALTDITPRPQVVYLDPMFPH  176 (258)
T ss_dssp             SCHHHHSTTCSSCCSEEEECCCCCC
T ss_pred             CCHHHHHHhCcccCCEEEEcCCCCC
Confidence            99876  2 33 5999999876654

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=97.82  E-value=3.9e-05  Score=64.53  Aligned_cols=77  Identities=17%  Similarity=0.130  Sum_probs=61.8

Q ss_pred             hhHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccC-CCCeEEEeCCCCC-C--C---
Q 041250          100 ATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESD-LVNLKYVGGDMFK-A--I---  171 (259)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~ri~~~~~d~~~-~--~---  171 (259)
                      ....+++.+.  ......+||.+||.|..+..++++  +.+++++|. |.+++.+++. .+|++++.+||.+ +  .   
T Consensus        10 Ll~e~le~L~--~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~l~~~L~~~   85 (285)
T 1wg8_A           10 LYQEALDLLA--VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAAL   85 (285)
T ss_dssp             THHHHHHHHT--CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHT
T ss_pred             HHHHHHHhhC--CCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHhhccCCEEEEECCcchHHHHHHHc
Confidence            4566777777  667789999999999999999998  779999999 8899888761 2689999999976 2  1   


Q ss_pred             --CCccEEeeh
Q 041250          172 --SPAYAVLLK  180 (259)
Q Consensus       172 --~~~D~~~~~  180 (259)
                        .++|.|++.
T Consensus        86 g~~~vDgIL~D   96 (285)
T 1wg8_A           86 GVERVDGILAD   96 (285)
T ss_dssp             TCSCEEEEEEE
T ss_pred             CCCCcCEEEeC
Confidence              247877753

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=97.80  E-value=3.3e-05  Score=67.72  Aligned_cols=97  Identities=15%  Similarity=0.085  Sum_probs=71.1

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-------------CCCCeEEEeCCCCCC-------CC
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-------------DLVNLKYVGGDMFKA-------IS  172 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------~~~ri~~~~~d~~~~-------~~  172 (259)
                      ++.+||=||||.|..+.++++ +|.-+++++|+ |.+++.+++             ..+|++++.+|.++-       ..
T Consensus       205 ~pkrVLIIGgGdG~~~revlk-h~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~  283 (381)
T 3c6k_A          205 TGKDVLILGGGDGGILCEIVK-LKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR  283 (381)
T ss_dssp             TTCEEEEEECTTCHHHHHHHT-TCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred             CCCeEEEECCCcHHHHHHHHh-cCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence            357999999999999999987 45578999999 999998876             135799999998751       12


Q ss_pred             CccEEeehhhhcc-------CC-hHHHHHHHHHHHHhcccCCCCcEEEEE
Q 041250          173 PAYAVLLKWILLD-------WN-DEECVKILKKCKEAITRDGKKRKVIIK  214 (259)
Q Consensus       173 ~~D~~~~~~vlh~-------~~-d~~~~~il~~~~~~L~p~~~gg~lli~  214 (259)
                      .||+|++--.=..       .. ..-...+++.++++|+|   ||.++..
T Consensus       284 ~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p---~GVlv~Q  330 (381)
T 3c6k_A          284 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQ---DGKYFTQ  330 (381)
T ss_dssp             CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEE---EEEEEEE
T ss_pred             ceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCC---CCEEEEe
Confidence            5999987521110       01 12235789999999999   7765543

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=97.77  E-value=2.1e-05  Score=72.63  Aligned_cols=99  Identities=13%  Similarity=0.026  Sum_probs=71.4

Q ss_pred             CCeEEEecCCchHHHHHHHHHCC---------------CCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-C-
Q 041250          115 LNSLVDVGGGTGTAAKAIAKAFP---------------KLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-A-  170 (259)
Q Consensus       115 ~~~vlDvGgG~G~~~~~l~~~~p---------------~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~-  170 (259)
                      ..+|+|.+||+|.++..+.+..+               +.++.++|+ +.++..|+.      ...++.+..+|.+. + 
T Consensus       245 ~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~  324 (544)
T 3khk_A          245 KGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQ  324 (544)
T ss_dssp             SEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCS
T ss_pred             CCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCcc
Confidence            34999999999999998865432               468999999 888888775      23455558899887 3 


Q ss_pred             CC--CccEEeehhhhc--cCChHH-------------------------HHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          171 IS--PAYAVLLKWILL--DWNDEE-------------------------CVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       171 ~~--~~D~~~~~~vlh--~~~d~~-------------------------~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      .+  .||+|+.+--+.  .|..+.                         ....++.+.+.|+|   ||++.++-+
T Consensus       325 ~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~---gGr~aiVlP  396 (544)
T 3khk_A          325 HPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAP---TGSMALLLA  396 (544)
T ss_dssp             CTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred             cccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhcc---CceEEEEec
Confidence            22  599999875443  232211                         12578999999999   899876643

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=97.71  E-value=0.0001  Score=70.30  Aligned_cols=101  Identities=12%  Similarity=0.073  Sum_probs=70.5

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCC---CCeEEEeec-hHHHhhc--cc---------CCCCeEEEeCCCCCC----CCC
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFP---KLECTCFDL-PHVVNGL--ES---------DLVNLKYVGGDMFKA----ISP  173 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p---~~~~~~~D~-~~~~~~a--~~---------~~~ri~~~~~d~~~~----~~~  173 (259)
                      ....+|+|.|||+|.++.++++..+   ..+++++|+ +.++..|  +.         ..+...+...|++.+    ..+
T Consensus       320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~k  399 (878)
T 3s1s_A          320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFAN  399 (878)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTT
T ss_pred             CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCC
Confidence            3467999999999999999999876   347999999 7777777  22         112245666677762    235


Q ss_pred             ccEEeehhhhcc-CChH-H-------------------------HHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          174 AYAVLLKWILLD-WNDE-E-------------------------CVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       174 ~D~~~~~~vlh~-~~d~-~-------------------------~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      ||+|+..--.-. +..+ .                         ...+++.+.+.|+|   ||++.++-+
T Consensus       400 FDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKp---GGrLAfIlP  466 (878)
T 3s1s_A          400 VSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQD---GTVISAIMP  466 (878)
T ss_dssp             EEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCT---TCEEEEEEE
T ss_pred             CCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCC---CcEEEEEEC
Confidence            999998754421 2211 1                         22367888999999   898876654

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=97.69  E-value=2.2e-05  Score=69.89  Aligned_cols=67  Identities=12%  Similarity=0.122  Sum_probs=54.8

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----C--C-CCeEEEeCCCCCC--C---CCccEEe
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----D--L-VNLKYVGGDMFKA--I---SPAYAVL  178 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~--~-~ri~~~~~d~~~~--~---~~~D~~~  178 (259)
                      +....+|||+|||+|..+..+++.  ..+++++|+ +.+++.|++    .  . ++++++.+|+++.  .   ..||+|+
T Consensus        91 l~~g~~VLDLgcG~G~~al~LA~~--g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~  168 (410)
T 3ll7_A           91 IREGTKVVDLTGGLGIDFIALMSK--ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIY  168 (410)
T ss_dssp             SCTTCEEEESSCSSSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEE
T ss_pred             cCCCCEEEEeCCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEE
Confidence            333689999999999999999887  468999999 888888876    2  2 6899999999873  2   2599999


Q ss_pred             eh
Q 041250          179 LK  180 (259)
Q Consensus       179 ~~  180 (259)
                      +.
T Consensus       169 lD  170 (410)
T 3ll7_A          169 VD  170 (410)
T ss_dssp             EC
T ss_pred             EC
Confidence            84

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=97.68  E-value=0.0003  Score=61.42  Aligned_cols=95  Identities=12%  Similarity=0.065  Sum_probs=66.4

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhcccCCCCeEEEeCCCCCC-CC--CccEEeehhhhccCCh
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKA-IS--PAYAVLLKWILLDWND  188 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~~-~~--~~D~~~~~~vlh~~~d  188 (259)
                      +..+.++||+||++|.++..++++  +.+++++|..++-.... ..++|+++.+|.++. .+  ++|++++-.+.   +.
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~~~l~-~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~---~p  282 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMAQSLM-DTGQVTWLREDGFKFRPTRSNISWMVCDMVE---KP  282 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCCHHHH-TTTCEEEECSCTTTCCCCSSCEEEEEECCSS---CH
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcChhhc-cCCCeEEEeCccccccCCCCCcCEEEEcCCC---Ch
Confidence            566789999999999999999988  67999999744333332 567999999999983 22  48998886654   33


Q ss_pred             HHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250          189 EECVKILKKCKEAITRDGKKRKVIIKD  215 (259)
Q Consensus       189 ~~~~~il~~~~~~L~p~~~gg~lli~e  215 (259)
                      .....++.+.......   ++.|+.+.
T Consensus       283 ~~~~~l~~~wl~~~~~---~~aI~~lK  306 (375)
T 4auk_A          283 AKVAALMAQWLVNGWC---RETIFNLK  306 (375)
T ss_dssp             HHHHHHHHHHHHTTSC---SEEEEEEE
T ss_pred             HHhHHHHHHHHhcccc---ceEEEEEE
Confidence            4444555555444443   35444444

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=97.62  E-value=0.00043  Score=59.39  Aligned_cols=103  Identities=14%  Similarity=0.098  Sum_probs=79.5

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeechHHHhhccc--------CCCCeEEEeCCCCCCCC------C----
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDLPHVVNGLES--------DLVNLKYVGGDMFKAIS------P----  173 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~--------~~~ri~~~~~d~~~~~~------~----  173 (259)
                      .+...||++|||-=.....+.  .| +++++-+|.|.+++..++        ..++..++..|+.+.+.      +    
T Consensus       101 ~g~~QvV~LGaGlDTra~Rl~--~~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~  178 (310)
T 2uyo_A          101 DGIRQFVILASGLDSRAYRLD--WPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPS  178 (310)
T ss_dssp             TTCCEEEEETCTTCCHHHHSC--CCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTT
T ss_pred             hCCCeEEEeCCCCCchhhhcc--CCCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCC
Confidence            455789999999988876665  34 478999999999987665        25788999999986311      1    


Q ss_pred             -ccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCC
Q 041250          174 -AYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENR  221 (259)
Q Consensus       174 -~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~  221 (259)
                       .=++++-.++|+++++++..+++.+.+.+.|   |+ .++.|.+.++.
T Consensus       179 ~Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~---gs-~l~~d~~~~~~  223 (310)
T 2uyo_A          179 ARTAWLAEGLLMYLPATAQDGLFTEIGGLSAV---GS-RIAVETSPLHG  223 (310)
T ss_dssp             SCEEEEECSCGGGSCHHHHHHHHHHHHHTCCT---TC-EEEEECCCTTC
T ss_pred             CCEEEEEechHhhCCHHHHHHHHHHHHHhCCC---Ce-EEEEEecCCCC
Confidence             3367777899999999999999999999888   55 56677765543

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=97.59  E-value=0.00016  Score=66.70  Aligned_cols=100  Identities=13%  Similarity=0.017  Sum_probs=74.0

Q ss_pred             CCCeEEEecCCchHHHHHHHHHC---CCCeEEEeec-hHHHhhccc-----CC--CCeEEEeCCCCCC-CC-----CccE
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAF---PKLECTCFDL-PHVVNGLES-----DL--VNLKYVGGDMFKA-IS-----PAYA  176 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~-----~~--~ri~~~~~d~~~~-~~-----~~D~  176 (259)
                      ...+|+|.+||+|.++..+.+..   +..++.++|+ +.+...|+.     ..  +++.+..+|.+.. +|     .||+
T Consensus       221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~  300 (542)
T 3lkd_A          221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDG  300 (542)
T ss_dssp             TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSE
T ss_pred             CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccE
Confidence            45699999999999999999884   3678999999 888887775     22  5789999999873 32     4999


Q ss_pred             Eeehhhh-ccCChH--------------------HHHHHHHHHHHhcc-cCCCCcEEEEEee
Q 041250          177 VLLKWIL-LDWNDE--------------------ECVKILKKCKEAIT-RDGKKRKVIIKDM  216 (259)
Q Consensus       177 ~~~~~vl-h~~~d~--------------------~~~~il~~~~~~L~-p~~~gg~lli~e~  216 (259)
                      |+.+--+ ..|..+                    .....++++.+.|+ |   ||++.++-+
T Consensus       301 IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~---gGr~a~VlP  359 (542)
T 3lkd_A          301 VLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQD---NGVMAIVLP  359 (542)
T ss_dssp             EEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTT---TCEEEEEEE
T ss_pred             EEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCC---ceeEEEEec
Confidence            9977322 123110                    01247999999999 8   898866654

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=97.57  E-value=7.2e-05  Score=62.50  Aligned_cols=93  Identities=19%  Similarity=0.219  Sum_probs=64.0

Q ss_pred             CCCeEEEecCCchHHHHHHHHH-------CCC-----CeEEEeec-h---HHHh-----------hccc-----------
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKA-------FPK-----LECTCFDL-P---HVVN-----------GLES-----------  155 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~-------~p~-----~~~~~~D~-~---~~~~-----------~a~~-----------  155 (259)
                      +..+|||||+|+|..+..+++.       +|+     ++++.++. |   +.+.           .+++           
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g  139 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  139 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence            4568999999999999887764       674     58999996 4   3322           2221           


Q ss_pred             --------CCCCeEEEeCCCCC--C-CC-----CccEEeehh-hhc----cCChHHHHHHHHHHHHhcccCCCCcEEEE
Q 041250          156 --------DLVNLKYVGGDMFK--A-IS-----PAYAVLLKW-ILL----DWNDEECVKILKKCKEAITRDGKKRKVII  213 (259)
Q Consensus       156 --------~~~ri~~~~~d~~~--~-~~-----~~D~~~~~~-vlh----~~~d~~~~~il~~~~~~L~p~~~gg~lli  213 (259)
                              ...+++++.+|..+  + .+     .||+|++-- .-.    .|.    ..+|+.+++.|+|   ||.|+.
T Consensus       140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~----~~~l~~l~~~L~p---GG~l~t  211 (257)
T 2qy6_A          140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWT----QNLFNAMARLARP---GGTLAT  211 (257)
T ss_dssp             EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCC----HHHHHHHHHHEEE---EEEEEE
T ss_pred             hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcC----HHHHHHHHHHcCC---CcEEEE
Confidence                    12467789999876  2 22     489998842 111    133    3689999999999   887664

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=97.56  E-value=0.00019  Score=60.55  Aligned_cols=107  Identities=12%  Similarity=0.100  Sum_probs=67.4

Q ss_pred             HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechH-HHhhcc---cCC-CCeEEEeC-CCCC-CCCCc
Q 041250          102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPH-VVNGLE---SDL-VNLKYVGG-DMFK-AISPA  174 (259)
Q Consensus       102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~---~~~-~ri~~~~~-d~~~-~~~~~  174 (259)
                      ..+.+. . .+.+..+|||+||++|.++..++++.+-..++++|+.. ......   ... +-+.+..+ |++. +...+
T Consensus        71 ~ei~ek-~-l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~~~~~  148 (300)
T 3eld_A           71 RWLHER-G-YLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMPTEPS  148 (300)
T ss_dssp             HHHHHH-T-SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSCCCCC
T ss_pred             HHHHHh-C-CCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecCceeeecCCCCc
Confidence            344444 3 45677899999999999999999877666788888832 111111   012 23444444 5554 22259


Q ss_pred             cEEeehhhhccCC----h-HHHHHHHHHHHHhcccCCCC-cEEEEE
Q 041250          175 YAVLLKWILLDWN----D-EECVKILKKCKEAITRDGKK-RKVIIK  214 (259)
Q Consensus       175 D~~~~~~vlh~~~----d-~~~~~il~~~~~~L~p~~~g-g~lli~  214 (259)
                      |++++.-..+ -.    | .....+|+-+.+.|+|   | |.+++-
T Consensus       149 DlVlsD~APn-sG~~~~D~~rs~~LL~~A~~~Lkp---G~G~FV~K  190 (300)
T 3eld_A          149 DTLLCDIGES-SSNPLVERDRTMKVLENFERWKHV---NTENFCVK  190 (300)
T ss_dssp             SEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCT---TCCEEEEE
T ss_pred             CEEeecCcCC-CCCHHHHHHHHHHHHHHHHHHhcC---CCCcEEEE
Confidence            9998865554 21    2 1224568878899999   8 876664

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=97.47  E-value=0.00078  Score=54.04  Aligned_cols=94  Identities=16%  Similarity=0.142  Sum_probs=62.9

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------C--CCCeEEEeCCCCCC------------
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------D--LVNLKYVGGDMFKA------------  170 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~--~~ri~~~~~d~~~~------------  170 (259)
                      +.+..+||++|||  .-+..+++ .++.+++.+|. ++..+.+++      .  .++|+++.+|..+.            
T Consensus        28 l~~a~~VLEiGtG--ySTl~lA~-~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~  104 (202)
T 3cvo_A           28 YEEAEVILEYGSG--GSTVVAAE-LPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKW  104 (202)
T ss_dssp             HHHCSEEEEESCS--HHHHHHHT-STTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTG
T ss_pred             hhCCCEEEEECch--HHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhh
Confidence            4567899999986  33333343 56789999998 777777775      3  67999999995431            


Q ss_pred             ------------C---CCccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250          171 ------------I---SPAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKE  219 (259)
Q Consensus       171 ------------~---~~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~  219 (259)
                                  .   ..||+|++-.-..       ...+..+.+.|+|   ||.| |+|.+..
T Consensus       105 ~~l~~~~~~i~~~~~~~~fDlIfIDg~k~-------~~~~~~~l~~l~~---GG~I-v~DNv~~  157 (202)
T 3cvo_A          105 RSYPDYPLAVWRTEGFRHPDVVLVDGRFR-------VGCALATAFSITR---PVTL-LFDDYSQ  157 (202)
T ss_dssp             GGTTHHHHGGGGCTTCCCCSEEEECSSSH-------HHHHHHHHHHCSS---CEEE-EETTGGG
T ss_pred             hhHHHHhhhhhccccCCCCCEEEEeCCCc-------hhHHHHHHHhcCC---CeEE-EEeCCcC
Confidence                        1   2489998875211       2345556688999   6655 6665433

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=97.19  E-value=0.00096  Score=57.44  Aligned_cols=69  Identities=12%  Similarity=0.121  Sum_probs=57.8

Q ss_pred             hhhHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeec-hHHHhhccc-CCCCeEEEeCCCCC
Q 041250           99 LATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES-DLVNLKYVGGDMFK  169 (259)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-~~~ri~~~~~d~~~  169 (259)
                      .....+++.+.  ......+||..+|.|..+..++++. |+.+++++|. |.+++.+++ ..+|++++.++|.+
T Consensus        44 VLl~Evl~~L~--i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~~  115 (347)
T 3tka_A           44 VLLDEAVNGLN--IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSA  115 (347)
T ss_dssp             TTTHHHHHHTC--CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHTTCCCTTEEEEESCGGG
T ss_pred             ccHHHHHHhhC--CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhhcCCcEEEEeCCHHH
Confidence            34567777777  6777899999999999999999985 8899999999 889988865 35789999888865

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.04  E-value=0.001  Score=54.26  Aligned_cols=102  Identities=14%  Similarity=0.073  Sum_probs=66.3

Q ss_pred             hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHH-Hh--hc-cc-CCCCeEEEeC-CCCC-CCCC
Q 041250          101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHV-VN--GL-ES-DLVNLKYVGG-DMFK-AISP  173 (259)
Q Consensus       101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~-~~--~a-~~-~~~ri~~~~~-d~~~-~~~~  173 (259)
                      ...+.+.+.  +....+|||+||++|.++...+....--++.++|+-.. -+  .. +. .-.-|+|+.+ |++. +.-.
T Consensus        67 L~ei~ek~~--l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~~~  144 (267)
T 3p8z_A           67 LQWFVERNM--VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPPEK  144 (267)
T ss_dssp             HHHHHHTTS--SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCCCC
T ss_pred             HHHHHHhcC--CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecCCcc
Confidence            345556654  66677999999999999998888765557999998221 11  11 11 4578999999 9876 3335


Q ss_pred             ccEEeehhhhccCC-hHHH---HHHHHHHHHhccc
Q 041250          174 AYAVLLKWILLDWN-DEEC---VKILKKCKEAITR  204 (259)
Q Consensus       174 ~D~~~~~~vlh~~~-d~~~---~~il~~~~~~L~p  204 (259)
                      +|.+++--.=..-+ .-+.   .++|.-+.+.|++
T Consensus       145 ~DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~  179 (267)
T 3p8z_A          145 CDTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN  179 (267)
T ss_dssp             CSEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS
T ss_pred             ccEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc
Confidence            99888764332222 1122   3356656677876

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=97.00  E-value=0.0025  Score=52.70  Aligned_cols=107  Identities=18%  Similarity=0.157  Sum_probs=62.6

Q ss_pred             hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHH---HhhcccCCCCe---EEEeC-CCCCCCC-
Q 041250          101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHV---VNGLESDLVNL---KYVGG-DMFKAIS-  172 (259)
Q Consensus       101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~---~~~a~~~~~ri---~~~~~-d~~~~~~-  172 (259)
                      ..++.+.+  .++...+|||+||+.|.++...+++-+-..+.+.++.-.   .+... ....+   .|+.+ ||++..+ 
T Consensus        62 L~EIdeK~--likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~-~~~Gv~~i~~~~G~Df~~~~~~  138 (269)
T 2px2_A           62 LRWLVERR--FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLM-QSYGWNIVTMKSGVDVFYKPSE  138 (269)
T ss_dssp             HHHHHHTT--SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCC-CSTTGGGEEEECSCCGGGSCCC
T ss_pred             HHHHHHcC--CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCcc-cCCCceEEEeeccCCccCCCCC
Confidence            34555553  478889999999999999999888621112233333111   11111 11344   55657 9998434 


Q ss_pred             CccEEeehhhhccCC----hHH-HHHHHHHHHHhcccCCCCc-EEEEE
Q 041250          173 PAYAVLLKWILLDWN----DEE-CVKILKKCKEAITRDGKKR-KVIIK  214 (259)
Q Consensus       173 ~~D~~~~~~vlh~~~----d~~-~~~il~~~~~~L~p~~~gg-~lli~  214 (259)
                      ++|+|++-..-. -+    |.. ....|.=+.+.|+|   || .+++-
T Consensus       139 ~~DvVLSDMAPn-SG~~~vD~~Rs~~aL~~A~~~Lk~---gG~~FvvK  182 (269)
T 2px2_A          139 ISDTLLCDIGES-SPSAEIEEQRTLRILEMVSDWLSR---GPKEFCIK  182 (269)
T ss_dssp             CCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTT---CCSEEEEE
T ss_pred             CCCEEEeCCCCC-CCccHHHHHHHHHHHHHHHHHhhc---CCcEEEEE
Confidence            599988654332 11    111 12346556688999   78 66663

>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*

Probab=96.94  E-value=0.022  Score=49.21  Aligned_cols=104  Identities=15%  Similarity=0.222  Sum_probs=82.2

Q ss_pred             CCCeEEEecCCchHHHHHHHHH-CCCCeEEEeechHHHhhccc----------------------------CCCCeEEEe
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKA-FPKLECTCFDLPHVVNGLES----------------------------DLVNLKYVG  164 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~D~~~~~~~a~~----------------------------~~~ri~~~~  164 (259)
                      +...||-+|||.=.....+... .++++++-+|+|++++.=++                            ..++..++.
T Consensus        90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v~  169 (334)
T 3iei_A           90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIG  169 (334)
T ss_dssp             TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEECHHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEEE
T ss_pred             CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCcHHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEEc
Confidence            4678999999999999999875 36788999999998864221                            157899999


Q ss_pred             CCCCCC--C---------C-C-ccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCC
Q 041250          165 GDMFKA--I---------S-P-AYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENR  221 (259)
Q Consensus       165 ~d~~~~--~---------~-~-~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~  221 (259)
                      .|+.+.  +         . . .=+++.--++.+++.+++..+|+.+.+...+    |.+++.|++.+.+
T Consensus       170 ~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f~~----~~~i~yE~i~p~d  235 (334)
T 3iei_A          170 ADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFER----AMFINYEQVNMGD  235 (334)
T ss_dssp             CCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSS----EEEEEEEECCTTS
T ss_pred             cccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhCCC----ceEEEEeccCCCC
Confidence            999871  1         1 1 3366667899999999999999999998765    7888889986543

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=96.74  E-value=0.0062  Score=51.30  Aligned_cols=112  Identities=15%  Similarity=0.193  Sum_probs=68.7

Q ss_pred             hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHH-Hh--h-ccc-CCCCeEEEeC-CCCC-CCCC
Q 041250          101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHV-VN--G-LES-DLVNLKYVGG-DMFK-AISP  173 (259)
Q Consensus       101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~-~~--~-a~~-~~~ri~~~~~-d~~~-~~~~  173 (259)
                      ...+.+.+.  +....+|||+||++|.++...+....--++.++|+-.. -+  . .++ .-.-|.|+.+ |++. +...
T Consensus        83 L~ei~~~~~--l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~~~  160 (321)
T 3lkz_A           83 LRWLVERRF--LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPSEC  160 (321)
T ss_dssp             HHHHHHTTS--CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCCCC
T ss_pred             HHHHHHhcC--CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCCCC
Confidence            344555544  66667999999999999998777765557999998222 11  1 111 2234889998 9776 3235


Q ss_pred             ccEEeehhhhccCCh---HH--HHHHHHHHHHhcccCCCC-cEEEEEeeeec
Q 041250          174 AYAVLLKWILLDWND---EE--CVKILKKCKEAITRDGKK-RKVIIKDMIKE  219 (259)
Q Consensus       174 ~D~~~~~~vlh~~~d---~~--~~~il~~~~~~L~p~~~g-g~lli~e~~~~  219 (259)
                      +|++++--. ---+.   |+  ..++|.-+.+.|++   + |-++| -.+.|
T Consensus       161 ~D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~---~~~~f~~-KVl~p  207 (321)
T 3lkz_A          161 CDTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHR---GPREFCV-KVLCP  207 (321)
T ss_dssp             CSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTT---CCCEEEE-EESCT
T ss_pred             CCEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhcc---CCCcEEE-EEcCC
Confidence            898776533 22221   11  23456666778887   5 55555 43333

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=96.58  E-value=0.003  Score=53.26  Aligned_cols=97  Identities=12%  Similarity=0.037  Sum_probs=67.8

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHC-----CCCeEEEeec----hH-----------------------HHhhccc-----
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAF-----PKLECTCFDL----PH-----------------------VVNGLES-----  155 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~-----p~~~~~~~D~----~~-----------------------~~~~a~~-----  155 (259)
                      ..+..||++|+..|.-++.+++..     |+.+++++|.    |+                       .++.+++     
T Consensus       105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~  184 (282)
T 2wk1_A          105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY  184 (282)
T ss_dssp             TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred             CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence            346799999999999998887654     5788999994    11                       1222333     


Q ss_pred             -C-CCCeEEEeCCCCCC---CC--CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250          156 -D-LVNLKYVGGDMFKA---IS--PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI  217 (259)
Q Consensus       156 -~-~~ri~~~~~d~~~~---~~--~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~  217 (259)
                       . .++|+++.||+.+.   .+  .+|++++-.-   + -+.....|..+.+.|+|   || ++|+|.+
T Consensus       185 gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD---~-y~~~~~~Le~~~p~L~p---GG-iIv~DD~  245 (282)
T 2wk1_A          185 DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGD---L-YESTWDTLTNLYPKVSV---GG-YVIVDDY  245 (282)
T ss_dssp             TCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCC---S-HHHHHHHHHHHGGGEEE---EE-EEEESSC
T ss_pred             CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCC---c-cccHHHHHHHHHhhcCC---CE-EEEEcCC
Confidence             2 48999999999872   32  4888877642   2 13345789999999999   55 5555554

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=96.54  E-value=0.012  Score=51.43  Aligned_cols=107  Identities=16%  Similarity=0.089  Sum_probs=74.8

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----------CCCCeEEEeCCCCC--C-CC-Ccc
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----------DLVNLKYVGGDMFK--A-IS-PAY  175 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~ri~~~~~d~~~--~-~~-~~D  175 (259)
                      ...+.+|||+.+|.|.=+..+++..++.+++..|+ +.-+...++           ...++.+...|...  + .+ .||
T Consensus       146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD  225 (359)
T 4fzv_A          146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYD  225 (359)
T ss_dssp             CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEE
T ss_pred             CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCC
Confidence            55678999999999999999999887778899998 444433322           23678999999876  2 23 599


Q ss_pred             EEeehh--------h-------hccCChHH-------HHHHHHHHHHhcccCCCCcEEEEEeeeecCC
Q 041250          176 AVLLKW--------I-------LLDWNDEE-------CVKILKKCKEAITRDGKKRKVIIKDMIKENR  221 (259)
Q Consensus       176 ~~~~~~--------v-------lh~~~d~~-------~~~il~~~~~~L~p~~~gg~lli~e~~~~~~  221 (259)
                      .|++--        +       .+.|..++       ..+||.++.+.++|   ||+|+-....+...
T Consensus       226 ~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkp---GG~LVYsTCSl~~~  290 (359)
T 4fzv_A          226 RVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKP---GGHVVYSTCSLSHL  290 (359)
T ss_dssp             EEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEE---EEEEEEEESCCCTT
T ss_pred             EEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCC---CcEEEEEeCCCchh
Confidence            988631        1       22233222       25789999999999   88876665554433

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=96.35  E-value=0.0072  Score=52.61  Aligned_cols=55  Identities=11%  Similarity=0.151  Sum_probs=44.4

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc--CCCCeEEEeCCCCC
Q 041250          115 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES--DLVNLKYVGGDMFK  169 (259)
Q Consensus       115 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~ri~~~~~d~~~  169 (259)
                      ...|||||.|.|.++..|+++...-+++++++ +..++..++  ..++++++.+|+++
T Consensus        59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~  116 (353)
T 1i4w_A           59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD  116 (353)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred             CCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhccCCCEEEEECCccc
Confidence            57899999999999999999754457999988 555555544  35799999999976

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=96.25  E-value=0.026  Score=51.89  Aligned_cols=109  Identities=9%  Similarity=-0.022  Sum_probs=71.2

Q ss_pred             HHHHhcccccCCCCeEEEecCCchHHHHHHHHHC-------------CCCeEEEeec-hHHHhhccc-----CCCCeEEE
Q 041250          103 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAF-------------PKLECTCFDL-PHVVNGLES-----DLVNLKYV  163 (259)
Q Consensus       103 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-------------p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~  163 (259)
                      .+++.++  .....+|+|-+||+|.++....+..             ...++.++|+ +.+...|+.     ..+.-.+.
T Consensus       208 lmv~l~~--p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I~  285 (530)
T 3ufb_A          208 FMVEVMD--PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRID  285 (530)
T ss_dssp             HHHHHHC--CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEEE
T ss_pred             HHHHhhc--cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCcccccc
Confidence            3444444  3445689999999999998876532             1346899998 777777764     33445677


Q ss_pred             eCCCCC-CC------CCccEEeehhhhcc-CC-------------hHHHHHHHHHHHHhcc-------cCCCCcEEEEEe
Q 041250          164 GGDMFK-AI------SPAYAVLLKWILLD-WN-------------DEECVKILKKCKEAIT-------RDGKKRKVIIKD  215 (259)
Q Consensus       164 ~~d~~~-~~------~~~D~~~~~~vlh~-~~-------------d~~~~~il~~~~~~L~-------p~~~gg~lli~e  215 (259)
                      .+|.+. +.      ..||+|+.+--+-. |.             .+.....++.+.+.|+       |   ||++.++-
T Consensus       286 ~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~---gGr~avVl  362 (530)
T 3ufb_A          286 PENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDN---GGRAAVVV  362 (530)
T ss_dssp             CSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSS---CCEEEEEE
T ss_pred             ccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCC---CceEEEEe
Confidence            888775 32      14999998754421 11             1122346778888886       5   89887765


Q ss_pred             e
Q 041250          216 M  216 (259)
Q Consensus       216 ~  216 (259)
                      +
T Consensus       363 P  363 (530)
T 3ufb_A          363 P  363 (530)
T ss_dssp             E
T ss_pred             c
Confidence            4

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=95.97  E-value=0.011  Score=49.97  Aligned_cols=41  Identities=22%  Similarity=0.122  Sum_probs=35.2

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES  155 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~  155 (259)
                      .....|||++||+|..+.++++.  +.+++++|+ +.+++.|++
T Consensus       234 ~~~~~vlD~f~GsGt~~~~a~~~--g~~~~g~e~~~~~~~~a~~  275 (297)
T 2zig_A          234 FVGDVVLDPFAGTGTTLIAAARW--GRRALGVELVPRYAQLAKE  275 (297)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHH
Confidence            34579999999999999998886  468999999 888888775

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=95.61  E-value=0.046  Score=46.10  Aligned_cols=94  Identities=13%  Similarity=0.072  Sum_probs=63.0

Q ss_pred             cCCCCeEEEecC------CchHHHHHHHHHCCC-CeEEEeechHHHhhcccCCCCeEEEeCCCCC-CC-CCccEEeehhh
Q 041250          112 FEGLNSLVDVGG------GTGTAAKAIAKAFPK-LECTCFDLPHVVNGLESDLVNLKYVGGDMFK-AI-SPAYAVLLKWI  182 (259)
Q Consensus       112 ~~~~~~vlDvGg------G~G~~~~~l~~~~p~-~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~-~~-~~~D~~~~~~v  182 (259)
                      .+...+|||+|+      -.|.+  .+.+..|. ..++.+|+.++...+.      .++.||+.+ .. .++|+|+.-..
T Consensus       107 vp~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~sda~------~~IqGD~~~~~~~~k~DLVISDMA  178 (344)
T 3r24_A          107 VPYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVSDAD------STLIGDCATVHTANKWDLIISDMY  178 (344)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBCSSS------EEEESCGGGEEESSCEEEEEECCC
T ss_pred             ecCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccccCCC------eEEEccccccccCCCCCEEEecCC
Confidence            577899999995      77873  45556886 6899999855543222      558899876 22 35999886431


Q ss_pred             ----hc---cC--ChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          183 ----LL---DW--NDEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       183 ----lh---~~--~d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                          =|   +-  ...-+..++.=+.+.|+|   ||.+++-=+
T Consensus       179 PNtTG~~D~d~~Rs~~L~ElALdfA~~~Lkp---GGsFvVKVF  218 (344)
T 3r24_A          179 DPRTKHVTKENDSKEGFFTYLCGFIKQKLAL---GGSIAVKIT  218 (344)
T ss_dssp             CTTSCSSCSCCCCCCTHHHHHHHHHHHHEEE---EEEEEEEEC
T ss_pred             CCcCCccccchhHHHHHHHHHHHHHHHhCcC---CCEEEEEEe
Confidence                11   11  223456677777889999   888777644

>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A

Probab=95.26  E-value=0.0008  Score=43.96  Aligned_cols=55  Identities=11%  Similarity=0.172  Sum_probs=41.6

Q ss_pred             HcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecC
Q 041250            8 QLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLT   63 (259)
Q Consensus         8 ~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t   63 (259)
                      +..|++.|.+++.++|..|||+.+|++...+.+.+..|...+++. ....+.|.++
T Consensus        12 ~~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~-~~~~G~y~lg   66 (67)
T 2heo_A           12 EQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVS-SPSPKYWSIG   66 (67)
T ss_dssp             HHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEE-EEETTEEEEC
T ss_pred             HHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEe-cCCCceEeeC
Confidence            456888887644689999999999999999999888876655431 2344677654

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=95.11  E-value=0.31  Score=46.07  Aligned_cols=105  Identities=10%  Similarity=0.021  Sum_probs=80.4

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCC--------CCeEEEeechHHHhhccc-----------C------------------
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAFP--------KLECTCFDLPHVVNGLES-----------D------------------  156 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~p--------~~~~~~~D~~~~~~~a~~-----------~------------------  156 (259)
                      +...||-+|||.=....++...+|        +++++-+|+|++++.=++           .                  
T Consensus       107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~p~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~  186 (695)
T 2zwa_A          107 KKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDYSDLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFLT  186 (695)
T ss_dssp             SEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEECHHHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCEE
T ss_pred             CCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECccHHHHHHHHHHHHcChHHHHhhcccccccccccccccccc
Confidence            457899999999999999988766        678888888988864322           0                  


Q ss_pred             CCCeEEEeCCCCCC-------------CCC-ccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCC
Q 041250          157 LVNLKYVGGDMFKA-------------ISP-AYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRK  222 (259)
Q Consensus       157 ~~ri~~~~~d~~~~-------------~~~-~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~  222 (259)
                      .++..++..|+.+.             .+. .=+++.--+|.+++.+++.++|+.+.+ + |   ++.+++.|.+.+...
T Consensus       187 s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~-~-~---~~~~~~~e~~~~~~~  261 (695)
T 2zwa_A          187 TPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSK-M-E---NSHFIILEQLIPKGP  261 (695)
T ss_dssp             CSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHT-S-S---SEEEEEEEECCTTCT
T ss_pred             CCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhh-C-C---CceEEEEEeecCCCC
Confidence            14899999999872             122 235566679999999999999999984 4 5   688899998877543


Q ss_pred             C
Q 041250          223 K  223 (259)
Q Consensus       223 ~  223 (259)
                      .
T Consensus       262 ~  262 (695)
T 2zwa_A          262 F  262 (695)
T ss_dssp             T
T ss_pred             C
Confidence            3

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=95.10  E-value=0.0073  Score=65.00  Aligned_cols=97  Identities=13%  Similarity=0.151  Sum_probs=49.2

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCC-----CeEEEeec-hHHHhhcccC--CCCeEEEeCCCCCC---CC-CccEEeehhh
Q 041250          115 LNSLVDVGGGTGTAAKAIAKAFPK-----LECTCFDL-PHVVNGLESD--LVNLKYVGGDMFKA---IS-PAYAVLLKWI  182 (259)
Q Consensus       115 ~~~vlDvGgG~G~~~~~l~~~~p~-----~~~~~~D~-~~~~~~a~~~--~~ri~~~~~d~~~~---~~-~~D~~~~~~v  182 (259)
                      ..+||+||+|+|.....+.+....     .+++..|+ +...+.+++.  .-.++...-|..++   .+ .||+|+.+++
T Consensus      1241 ~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~~v 1320 (2512)
T 2vz8_A         1241 KMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCNCA 1320 (2512)
T ss_dssp             EEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEECC
T ss_pred             CceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEccc
Confidence            358999999999887776665432     25777887 5555566542  11233322233232   22 4999999999


Q ss_pred             hccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          183 LLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       183 lh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      ||--++.  ...|+++++.|+|   ||++++.+.
T Consensus      1321 l~~t~~~--~~~l~~~~~lL~p---~G~l~~~e~ 1349 (2512)
T 2vz8_A         1321 LATLGDP--AVAVGNMAATLKE---GGFLLLHTL 1349 (2512)
T ss_dssp             -------------------------CCEEEEEEC
T ss_pred             ccccccH--HHHHHHHHHhcCC---CcEEEEEec
Confidence            9966543  4689999999999   999998874

>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5

Probab=94.43  E-value=0.0025  Score=44.50  Aligned_cols=56  Identities=14%  Similarity=0.171  Sum_probs=44.8

Q ss_pred             HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhhh
Q 041250            7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASK   67 (259)
Q Consensus         7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~~   67 (259)
                      .++.|+..| .  ++.|+.|||+.+|+++..+.+.|+.|...+++... . +.|.+++.++
T Consensus        32 ~r~~Il~~L-~--~~~~~~eLa~~l~is~~tv~~~L~~L~~~Glv~~~-~-g~y~l~~~g~   87 (96)
T 1y0u_A           32 VRRKILRML-D--KGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERV-G-ERWVVTDAGK   87 (96)
T ss_dssp             HHHHHHHHH-H--TTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-T-TEEEECTTTC
T ss_pred             HHHHHHHHH-c--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE-C-CEEEECCCch
Confidence            466788888 5  78999999999999999999988887766654212 2 6899998765

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=93.97  E-value=0.15  Score=44.71  Aligned_cols=66  Identities=17%  Similarity=0.302  Sum_probs=43.2

Q ss_pred             cCchHHHHHHHHHHhcchhhhHHHHHhcccccCCCCeEEEecCCchHHHHHHHHH-------CCCCeEEEeechHHHhh
Q 041250           81 DESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKA-------FPKLECTCFDLPHVVNG  152 (259)
Q Consensus        81 ~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-------~p~~~~~~~D~~~~~~~  152 (259)
                      +.|+..+.|...++.+-   .. .+....  .+.+-.|+++|.|+|.++..+++.       +..+++..++.++.+..
T Consensus        53 Tapeis~~FGe~la~~~---~~-~w~~~g--~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~  125 (387)
T 1zkd_A           53 TSPEISQMFGELLGLWS---AS-VWKAAD--EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQ  125 (387)
T ss_dssp             SHHHHCHHHHHHHHHHH---HH-HHHHTT--CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHH
T ss_pred             CCCchHHHHHHHHHHHH---HH-HHHHcC--CCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHH
Confidence            34777777877665431   11 122222  344567999999999999988764       23458999999555543

>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}

Probab=93.91  E-value=0.0048  Score=51.33  Aligned_cols=59  Identities=12%  Similarity=0.107  Sum_probs=46.6

Q ss_pred             cCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhhh
Q 041250            9 LGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASK   67 (259)
Q Consensus         9 l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~~   67 (259)
                      +.|++.|...+++.|+.|||+++|++...+.|+|..|...+++..+.+.++|.+++..-
T Consensus         9 l~IL~~l~~~~~~lsl~eia~~lgl~ksT~~RlL~tL~~~G~v~~~~~~~~Y~lG~~~~   67 (260)
T 3r4k_A            9 LTLLTYFNHGRLEIGLSDLTRLSGMNKATVYRLMSELQEAGFVEQVEGARSYRLGPQVL   67 (260)
T ss_dssp             HHHHTTCBTTBSEEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEECSSSSEEEECTTHH
T ss_pred             HHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEcCCCCcEEcCHHHH
Confidence            45778887644789999999999999999999999988877653233448999987643

>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}

Probab=93.90  E-value=0.0063  Score=43.84  Aligned_cols=63  Identities=17%  Similarity=0.085  Sum_probs=48.2

Q ss_pred             HHcCcchhhhcCCCCCCHHHHHHHc--CCCccccccceeccccccCCCCCCCCceeecCHhhhhhhc
Q 041250            7 FQLGIPDIINKHGKPMTLNELVSAL--TINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASKLLLK   71 (259)
Q Consensus         7 ~~l~lf~~L~~~~~~~t~~elA~~~--~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~~~l~~   71 (259)
                      .+..|++.|..+ |+.|+.+||+.+  ++++..+++-++.|...+++... ..+.|.+|+.++.+..
T Consensus        14 ~d~~IL~~L~~~-g~~s~~eLA~~l~~giS~~aVs~rL~~Le~~GLV~~~-~rg~Y~LT~~G~~~l~   78 (111)
T 3b73_A           14 WDDRILEIIHEE-GNGSPKELEDRDEIRISKSSVSRRLKKLADHDLLQPL-ANGVYVITEEGEAYLN   78 (111)
T ss_dssp             HHHHHHHHHHHH-SCBCHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEEC-STTCEEECHHHHHHHT
T ss_pred             HHHHHHHHHHHc-CCCCHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEec-CCceEEECchHHHHHH
Confidence            456688889764 799999999999  99999999888777666554212 3348999999984443

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=93.88  E-value=0.27  Score=41.14  Aligned_cols=100  Identities=14%  Similarity=-0.050  Sum_probs=73.4

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEeCCCCC--C--CC---CccEEeehhhh
Q 041250          115 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFK--A--IS---PAYAVLLKWIL  183 (259)
Q Consensus       115 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~--~--~~---~~D~~~~~~vl  183 (259)
                      ...+||+=+|+|.+++++++.  .-+++.+|+ +..++..++   ..++++++..|.++  .  .|   ++|+|++---.
T Consensus        92 ~~~~LDlfaGSGaLgiEaLS~--~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPY  169 (283)
T 2oo3_A           92 LNSTLSYYPGSPYFAINQLRS--QDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSY  169 (283)
T ss_dssp             SSSSCCEEECHHHHHHHHSCT--TSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCC
T ss_pred             CCCceeEeCCcHHHHHHHcCC--CCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCC
Confidence            456899999999999999984  568999999 777777666   45789999999765  1  12   49999988766


Q ss_pred             ccCChHHHHHHHHHHHHh--cccCCCCcEEEEEeeeecCC
Q 041250          184 LDWNDEECVKILKKCKEA--ITRDGKKRKVIIKDMIKENR  221 (259)
Q Consensus       184 h~~~d~~~~~il~~~~~~--L~p~~~gg~lli~e~~~~~~  221 (259)
                      ..-.  +..++++.+.+.  +.|   +|.++|.=++.+..
T Consensus       170 e~k~--~~~~vl~~L~~~~~r~~---~Gi~v~WYPi~~~~  204 (283)
T 2oo3_A          170 ERKE--EYKEIPYAIKNAYSKFS---TGLYCVWYPVVNKA  204 (283)
T ss_dssp             CSTT--HHHHHHHHHHHHHHHCT---TSEEEEEEEESSHH
T ss_pred             CCCc--HHHHHHHHHHHhCccCC---CeEEEEEEeccchH
Confidence            4322  344556655553  335   79888888876644

>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}

Probab=93.53  E-value=0.38  Score=36.50  Aligned_cols=94  Identities=15%  Similarity=0.185  Sum_probs=59.7

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEeec-----hHHHhhcccCCCCeEEEeCCCCCCCC------CccEEeehhhh
Q 041250          115 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-----PHVVNGLESDLVNLKYVGGDMFKAIS------PAYAVLLKWIL  183 (259)
Q Consensus       115 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-----~~~~~~a~~~~~ri~~~~~d~~~~~~------~~D~~~~~~vl  183 (259)
                      ..-|+|+|=|+|..=..+.+.+|+-.+.++|.     |+..      .+.-.++.||+.+..|      +..+.+...=+
T Consensus        41 ~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~~~~hp~~~------P~~e~~ilGdi~~tL~~~~~r~g~~a~LaHaD~  114 (174)
T 3iht_A           41 SGPVYELGLGNGRTYHHLRQHVQGREIYVFERAVASHPDST------PPEAQLILGDIRETLPATLERFGATASLVHADL  114 (174)
T ss_dssp             CSCEEEECCTTCHHHHHHHHHCCSSCEEEEESSCCCCGGGC------CCGGGEEESCHHHHHHHHHHHHCSCEEEEEECC
T ss_pred             CCceEEecCCCChhHHHHHHhCCCCcEEEEEeeeccCCCCC------CchHheecccHHHHHHHHHHhcCCceEEEEeec
Confidence            45799999999999999999999999999996     3332      3344677788877322      23444444333


Q ss_pred             ccCChHHHHHHHHHH----HHhcccCCCCcEEEEEeeee
Q 041250          184 LDWNDEECVKILKKC----KEAITRDGKKRKVIIKDMIK  218 (259)
Q Consensus       184 h~~~d~~~~~il~~~----~~~L~p~~~gg~lli~e~~~  218 (259)
                      -.-..++.....+.+    ...|.|   || +++...-+
T Consensus       115 G~g~~~~d~a~a~~lsplI~~~la~---GG-i~vS~~pl  149 (174)
T 3iht_A          115 GGHNREKNDRFARLISPLIEPHLAQ---GG-LMVSSDRM  149 (174)
T ss_dssp             CCSCHHHHHHHHHHHHHHHGGGEEE---EE-EEEESSCC
T ss_pred             CCCCcchhHHHHHhhhHHHHHHhcC---Cc-EEEeCCcc
Confidence            333334333444443    457888   55 45544433

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=93.37  E-value=0.48  Score=41.39  Aligned_cols=99  Identities=12%  Similarity=0.138  Sum_probs=69.1

Q ss_pred             CeEEEecCCchHHHHHHHHHCCCCe-EEEeec-hHHHhhcccCCCCeEEEeCCCCCC----C-------CCccEEeehhh
Q 041250          116 NSLVDVGGGTGTAAKAIAKAFPKLE-CTCFDL-PHVVNGLESDLVNLKYVGGDMFKA----I-------SPAYAVLLKWI  182 (259)
Q Consensus       116 ~~vlDvGgG~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~----~-------~~~D~~~~~~v  182 (259)
                      -+++|+-||.|.++..+.++  +.+ +..+|+ +.+++..+...+...++.+|+.+-    +       +.+|+++...-
T Consensus         3 ~~vidLFsG~GGlslG~~~a--G~~~v~avE~d~~a~~t~~~N~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ggpP   80 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARA--GFDVKMAVEIDQHAINTHAINFPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGGPP   80 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHH--TCEEEEEECSCHHHHHHHHHHCTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEECCC
T ss_pred             CeEEEEccCcCHHHHHHHHC--CCcEEEEEeCCHHHHHHHHHhCCCCceEecChhhcCHHHHHhhcccCCCeeEEEecCC
Confidence            47999999999999999998  465 558898 777766665555678888888762    2       35899998877


Q ss_pred             hccCC-------hHHHHHHHHHHH---HhcccCCCCcEEEEEeeeecCC
Q 041250          183 LLDWN-------DEECVKILKKCK---EAITRDGKKRKVIIKDMIKENR  221 (259)
Q Consensus       183 lh~~~-------d~~~~~il~~~~---~~L~p~~~gg~lli~e~~~~~~  221 (259)
                      +..++       ++..-.++....   +.++|     ++++.|.|..--
T Consensus        81 CQ~fS~ag~~~~~d~r~~L~~~~~~~v~~~~P-----~~~v~ENV~gl~  124 (376)
T 3g7u_A           81 CQGFSSIGKGNPDDSRNQLYMHFYRLVSELQP-----LFFLAENVPGIM  124 (376)
T ss_dssp             CCTTC-------CHHHHHHHHHHHHHHHHHCC-----SEEEEEECTTTT
T ss_pred             CCCcccccCCCCCCchHHHHHHHHHHHHHhCC-----CEEEEecchHhh
Confidence            66664       222234444444   34555     678899876543

>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}

Probab=93.29  E-value=0.012  Score=49.36  Aligned_cols=58  Identities=16%  Similarity=0.134  Sum_probs=44.7

Q ss_pred             cCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhhh
Q 041250            9 LGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASK   67 (259)
Q Consensus         9 l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~~   67 (259)
                      +.|++.|...+++.|+.|||+++|++...+.|+|..|...+++. ...+++|.+++..-
T Consensus        33 l~IL~~l~~~~~~ltl~eia~~lgl~ksTv~RlL~tL~~~G~v~-~~~~~~Y~LG~~~~   90 (275)
T 3mq0_A           33 VRILDLVAGSPRDLTAAELTRFLDLPKSSAHGLLAVMTELDLLA-RSADGTLRIGPHSL   90 (275)
T ss_dssp             HHHHHHHHHCSSCEEHHHHHHHHTCC--CHHHHHHHHHHTTSEE-ECTTSEEEECTHHH
T ss_pred             HHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE-ECCCCcEEehHHHH
Confidence            45788888755689999999999999999999999988877653 22347899987643

>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A

Probab=93.28  E-value=0.01  Score=40.14  Aligned_cols=63  Identities=6%  Similarity=-0.006  Sum_probs=42.3

Q ss_pred             HHHHcCcchhhhcCCC---CCCHHHHHHHcCCCccccccceeccccccCCCC-CCCCceeecCHhhhh
Q 041250            5 CAFQLGIPDIINKHGK---PMTLNELVSALTINLSKTQCFFAQQKLVSSGNN-NDEEQGYVLTNASKL   68 (259)
Q Consensus         5 ~a~~l~lf~~L~~~~~---~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~-~~~~~~y~~t~~~~~   68 (259)
                      .-.+..|++.|.++ +   ++|+.|||+++|++...+.+.|..|..-+++.. ...++.|.+.+....
T Consensus         9 ~~~~~~IL~~L~~~-~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~g~~~~~W~i~~~~~~   75 (81)
T 1qbj_A            9 QDQEQRILKFLEEL-GEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTPPLWKIAVSTQA   75 (81)
T ss_dssp             HHHHHHHHHHHHHH-CTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEESSSSCEEEEC-----
T ss_pred             hHHHHHHHHHHHHc-CCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCCCeeEEeCcHHh
Confidence            34566788888875 4   799999999999999999887776654443211 234578888877653

>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A

Probab=93.13  E-value=0.01  Score=48.79  Aligned_cols=61  Identities=15%  Similarity=0.096  Sum_probs=46.8

Q ss_pred             cCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhhhhh
Q 041250            9 LGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASKLL   69 (259)
Q Consensus         9 l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~~~l   69 (259)
                      +.|++.|...+++.|+.|||+.+|++...+.|+|..|...+++..+.+.++|.+++..-.|
T Consensus         9 l~iL~~l~~~~~~~s~~ela~~~gl~~stv~r~l~~L~~~G~v~~~~~~~~Y~lg~~~~~l   69 (241)
T 2xrn_A            9 ASIMRALGSHPHGLSLAAIAQLVGLPRSTVQRIINALEEEFLVEALGPAGGFRLGPALGQL   69 (241)
T ss_dssp             HHHHHHHHTCTTCEEHHHHHHHTTSCHHHHHHHHHHHHTTTSEEECGGGCEEEECSHHHHH
T ss_pred             HHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCCCCeEEECHHHHHH
Confidence            4567788764457999999999999999999999998877765223334789998765444

>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A

Probab=92.73  E-value=0.015  Score=40.85  Aligned_cols=59  Identities=15%  Similarity=0.086  Sum_probs=44.3

Q ss_pred             HHHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCC--CCCCceeecCHh
Q 041250            5 CAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNN--NDEEQGYVLTNA   65 (259)
Q Consensus         5 ~a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~--~~~~~~y~~t~~   65 (259)
                      .-.++.|+..|..  ++.|+.|||+.+|+++..+++-|+.|...+++..  +.....|++|+.
T Consensus        22 ~~~r~~Il~~L~~--~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~   82 (102)
T 3pqk_A           22 HPVRLMLVCTLVE--GEFSVGELEQQIGIGQPTLSQQLGVLRESGIVETRRNIKQIFYRLTEA   82 (102)
T ss_dssp             SHHHHHHHHHHHT--CCBCHHHHHHHHTCCTTHHHHHHHHHHHTTSEEEECSSSCCEEEECSS
T ss_pred             CHHHHHHHHHHHh--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECcH
Confidence            3467778889976  7999999999999999999998887766555421  223346888764

>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}

Probab=92.61  E-value=0.016  Score=47.96  Aligned_cols=59  Identities=10%  Similarity=0.064  Sum_probs=46.7

Q ss_pred             cCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhhhhh
Q 041250            9 LGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASKLL   69 (259)
Q Consensus         9 l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~~~l   69 (259)
                      +.|++.|...+++.|+.|||+++|+++..+.|+|..|...+++  +.+++.|.+++..-.|
T Consensus        17 l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~~L~~~G~v--~~~~~~Y~Lg~~~~~l   75 (257)
T 2g7u_A           17 FAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQKLGYV--AGSGGRWSLTPRVLSI   75 (257)
T ss_dssp             HHHHHTCSSSCSSCBHHHHHHHHTCCHHHHHHHHHHHHHTTSE--EEETTEEEECGGGHHH
T ss_pred             HHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCE--EeCCCEEEEcHHHHHH
Confidence            4577788754468999999999999999999999988777665  3345899998876444

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=92.56  E-value=0.13  Score=42.55  Aligned_cols=41  Identities=22%  Similarity=0.153  Sum_probs=34.5

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES  155 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~  155 (259)
                      .....|||..||+|..+.+..+.  +.+++++|+ |..++.+++
T Consensus       211 ~~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~~~~~  252 (260)
T 1g60_A          211 NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQANF  252 (260)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHH
Confidence            44679999999999999998887  568999999 777776654

>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A

Probab=92.38  E-value=0.012  Score=42.87  Aligned_cols=61  Identities=8%  Similarity=0.072  Sum_probs=44.7

Q ss_pred             HHHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCC--CCceeecCHhh
Q 041250            5 CAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNND--EEQGYVLTNAS   66 (259)
Q Consensus         5 ~a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~--~~~~y~~t~~~   66 (259)
                      .-.++.|+..|... ++.|+.|||+.+|+++..+++.|+.|...+++..+.  ....|++++..
T Consensus        41 ~~~rl~IL~~L~~~-~~~s~~eLa~~l~is~stvs~~L~~L~~~Glv~~~~~gr~~~y~l~~~~  103 (122)
T 1u2w_A           41 DENRAKITYALCQD-EELCVCDIANILGVTIANASHHLRTLYKQGVVNFRKEGKLALYSLGDEH  103 (122)
T ss_dssp             SHHHHHHHHHHHHS-SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC----CCEEEESCHH
T ss_pred             CHHHHHHHHHHHHC-CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEECCEEEEEECHHH
Confidence            34577899999843 799999999999999999999888876665542122  22358887653

>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2

Probab=92.26  E-value=0.022  Score=46.91  Aligned_cols=57  Identities=14%  Similarity=0.186  Sum_probs=44.9

Q ss_pred             cCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhh
Q 041250            9 LGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNAS   66 (259)
Q Consensus         9 l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~   66 (259)
                      +.|++.|...+++.|+.|||+.+|++...+.|+|..|...+++..+ ..+.|.+++..
T Consensus        11 l~iL~~l~~~~~~~~~~ela~~~gl~~stv~r~l~~L~~~G~v~~~-~~~~Y~lg~~~   67 (249)
T 1mkm_A           11 FEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRK-KDKRYVPGYKL   67 (249)
T ss_dssp             HHHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC-TTSCEEECTHH
T ss_pred             HHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEC-CCCcEEECHHH
Confidence            4567788764358999999999999999999999988777665223 46789998754

>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}

Probab=92.15  E-value=0.017  Score=48.08  Aligned_cols=56  Identities=13%  Similarity=0.180  Sum_probs=44.9

Q ss_pred             cCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhh
Q 041250            9 LGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNAS   66 (259)
Q Consensus         9 l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~   66 (259)
                      +.|++.|...+++.|+.|||+++|++...+.|+|..|...+++  +.++++|.+++..
T Consensus        24 l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~tL~~~G~v--~~~~~~Y~Lg~~~   79 (265)
T 2ia2_A           24 LAVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLVELGYV--ATDGSAFWLTPRV   79 (265)
T ss_dssp             HHHHHTCCSSCSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSE--EESSSEEEECGGG
T ss_pred             HHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCE--EecCCEEEEcHHH
Confidence            4577778653468999999999999999999999988777665  3346899998764

>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19

Probab=92.14  E-value=0.018  Score=38.73  Aligned_cols=59  Identities=8%  Similarity=0.062  Sum_probs=43.7

Q ss_pred             HHcCcchhhhcCCCCCCHHHHHHHcCCCcc-ccccceeccccccCCCC--CCCCceeecCHhhh
Q 041250            7 FQLGIPDIINKHGKPMTLNELVSALTINLS-KTQCFFAQQKLVSSGNN--NDEEQGYVLTNASK   67 (259)
Q Consensus         7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~-~l~~ll~~~~~~~~~~~--~~~~~~y~~t~~~~   67 (259)
                      .+-.|.+.|... ||.|+.+||+.+|+++. .+.+-|..|..-+++..  ...+ .|.+|+.++
T Consensus        12 ~~~~IL~~Lk~~-g~~ta~eiA~~Lgit~~~aVr~hL~~Le~eGlV~~~~~gRP-~w~LT~~g~   73 (79)
T 1xmk_A           12 IKEKICDYLFNV-SDSSALNLAKNIGLTKARDINAVLIDMERQGDVYRQGTTPP-IWHLTDKKR   73 (79)
T ss_dssp             HHHHHHHHHHHT-CCEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEEEECSSSC-EEEECHHHH
T ss_pred             HHHHHHHHHHHc-CCcCHHHHHHHcCCCcHHHHHHHHHHHHHCCCEEecCCCCC-CeEeCHhHH
Confidence            345677888876 89999999999999998 89887776654443311  1233 899999886

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=92.00  E-value=0.48  Score=40.77  Aligned_cols=102  Identities=9%  Similarity=0.082  Sum_probs=65.2

Q ss_pred             CeEEEecCCchHHHHHHHHHCCCC-eEEEeec-hHHHhhcccCCCCeEEEeCCCCCC----CC--CccEEeehhhhccCC
Q 041250          116 NSLVDVGGGTGTAAKAIAKAFPKL-ECTCFDL-PHVVNGLESDLVNLKYVGGDMFKA----IS--PAYAVLLKWILLDWN  187 (259)
Q Consensus       116 ~~vlDvGgG~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~----~~--~~D~~~~~~vlh~~~  187 (259)
                      .+++|+-||.|.++..+.++.-+. .+..+|+ +.+++..+...+...++.+|+.+-    ++  .+|+++...-...++
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~~~~~~~Di~~~~~~~~~~~~~D~l~~gpPCq~fS   82 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPFT   82 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC-----
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccccccccCCHHHccHhHcCcCCcCEEEEcCCCcchh
Confidence            579999999999999999984223 3788898 777777776455566788898772    23  589999887655554


Q ss_pred             hH--------HHHHHHHHHHHhcccCCCC--cEEEEEeeeec
Q 041250          188 DE--------ECVKILKKCKEAITRDGKK--RKVIIKDMIKE  219 (259)
Q Consensus       188 d~--------~~~~il~~~~~~L~p~~~g--g~lli~e~~~~  219 (259)
                      -.        ..-.++.++.+.++..  .  -++++.|.+..
T Consensus        83 ~ag~~~g~~d~r~~l~~~~~~~i~~~--~~~P~~~~~ENV~~  122 (343)
T 1g55_A           83 RIGRQGDMTDSRTNSFLHILDILPRL--QKLPKYILLENVKG  122 (343)
T ss_dssp             -------------CHHHHHHHHGGGC--SSCCSEEEEEEETT
T ss_pred             hcCCcCCccCccchHHHHHHHHHHHh--cCCCCEEEEeCCcc
Confidence            21        1123555555544431  1  35788888764

>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}

Probab=91.81  E-value=0.014  Score=40.63  Aligned_cols=60  Identities=15%  Similarity=0.159  Sum_probs=45.0

Q ss_pred             HHHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCC--CCCceeecCHhh
Q 041250            5 CAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNN--DEEQGYVLTNAS   66 (259)
Q Consensus         5 ~a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~--~~~~~y~~t~~~   66 (259)
                      .-.++.|+..|.+  ++.|+.|||+.+|+++..+++-|+.|...+++..+  .....|.+++..
T Consensus        22 ~~~r~~Il~~L~~--~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~~   83 (98)
T 3jth_A           22 NERRLQILCMLHN--QELSVGELCAKLQLSQSALSQHLAWLRRDGLVTTRKEAQTVYYTLKSEE   83 (98)
T ss_dssp             SHHHHHHHHHTTT--SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTTCCEEEECCHH
T ss_pred             CHHHHHHHHHHhc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECHHH
Confidence            3457788899986  89999999999999999999988887666554211  233458877643

>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19

Probab=91.47  E-value=0.016  Score=38.73  Aligned_cols=57  Identities=7%  Similarity=-0.008  Sum_probs=40.9

Q ss_pred             HHcCcchhhhcCCC---CCCHHHHHHHcCCCccccccceeccccccCCCC-CCCCceeecCH
Q 041250            7 FQLGIPDIINKHGK---PMTLNELVSALTINLSKTQCFFAQQKLVSSGNN-NDEEQGYVLTN   64 (259)
Q Consensus         7 ~~l~lf~~L~~~~~---~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~-~~~~~~y~~t~   64 (259)
                      .+..|++.|.++ +   ++|+.|||+++|++...+.+.|..|..-+++.. ...++.|.+++
T Consensus        15 ~~~~IL~~L~~~-~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~g~~~~~W~i~~   75 (77)
T 1qgp_A           15 QEQRILKFLEEL-GEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTPPLWKIAV   75 (77)
T ss_dssp             HHHHHHHHHHHH-CSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEECSSSCEEEECC
T ss_pred             HHHHHHHHHHHc-CCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCCCceEecC
Confidence            456677888875 4   799999999999999999988877654443211 23456777654

>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}

Probab=91.34  E-value=0.034  Score=46.14  Aligned_cols=58  Identities=14%  Similarity=0.145  Sum_probs=43.9

Q ss_pred             cCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhhh
Q 041250            9 LGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASK   67 (259)
Q Consensus         9 l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~~   67 (259)
                      +.|++.|...+++.|+.|||+++|++...+.|+|..|...+++..+.+ ++|.+++..-
T Consensus        26 l~iL~~l~~~~~~~~~~eia~~~gl~kstv~r~l~tL~~~G~v~~~~~-~~Y~lg~~~~   83 (260)
T 2o0y_A           26 IDLLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATMCARSVLTSRAD-GSYSLGPEML   83 (260)
T ss_dssp             HHHHTTCBTTBSSBCHHHHHHHHCCCHHHHHHHHHHHHHTTSEEECTT-SCEEECHHHH
T ss_pred             HHHHHHHhhCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEECCC-CeEEecHHHH
Confidence            456777764337899999999999999999999998877766522222 3899987643

>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A

Probab=91.31  E-value=0.035  Score=38.64  Aligned_cols=55  Identities=13%  Similarity=0.133  Sum_probs=44.0

Q ss_pred             CcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhhhhh
Q 041250           10 GIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASKLL   69 (259)
Q Consensus        10 ~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~~~l   69 (259)
                      .|...|..  + ++..+||..+|++++.++..++.+...+++  +...+.|.+|+.+..+
T Consensus        12 ~IL~~i~~--~-~~~t~La~~~~ls~~~~~~~l~~L~~~GLI--~~~~~~~~LT~kG~~~   66 (95)
T 1r7j_A           12 AILEACKS--G-SPKTRIMYGANLSYALTGRYIKMLMDLEII--RQEGKQYMLTKKGEEL   66 (95)
T ss_dssp             HHHHHHTT--C-BCHHHHHHHHTCCHHHHHHHHHHHHHTTSE--EEETTEEEECHHHHHH
T ss_pred             HHHHHHHc--C-CCHHHHHHHhCcCHHHHHHHHHHHHHCCCe--EEECCeeEEChhHHHH
Confidence            35566664  5 999999999999999999999888776654  4456679999999844

>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}

Probab=91.28  E-value=0.024  Score=46.64  Aligned_cols=63  Identities=11%  Similarity=0.088  Sum_probs=49.1

Q ss_pred             HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhhhhhh
Q 041250            7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASKLLL   70 (259)
Q Consensus         7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~~~l~   70 (259)
                      .++.|+..|..+ ++.|..|||+.+|+++..+.|.++.|...+++........|.+|+.+..+.
T Consensus       153 ~~~~IL~~L~~~-~~~s~~eLA~~lglsksTv~r~L~~Le~~GlV~r~~r~~~~~LT~~G~~l~  215 (244)
T 2wte_A          153 EEMKLLNVLYET-KGTGITELAKMLDKSEKTLINKIAELKKFGILTQKGKDRKVELNELGLNVI  215 (244)
T ss_dssp             HHHHHHHHHHHH-TCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTTEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCCccEEEECHHHHHHH
Confidence            355677777654 789999999999999999999998887766542223456899999998553

>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}

Probab=90.47  E-value=0.022  Score=39.35  Aligned_cols=60  Identities=15%  Similarity=0.111  Sum_probs=44.3

Q ss_pred             HHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCC--CCCCceeecCHhh
Q 041250            6 AFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNN--NDEEQGYVLTNAS   66 (259)
Q Consensus         6 a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~--~~~~~~y~~t~~~   66 (259)
                      -.++.|+..|.. +++.|..|||+.+|+++..+.+.+..+...+++..  +.....|.+++.+
T Consensus        24 ~~~~~il~~l~~-~~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~~~~r~~~y~l~~~~   85 (99)
T 3cuo_A           24 PKRLLILCMLSG-SPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQRDAQRILYSIKNEA   85 (99)
T ss_dssp             HHHHHHHHHHTT-CCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSSCEEEEECCHH
T ss_pred             hHHHHHHHHHHh-CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCEEEEEEChHH
Confidence            356678888876 36899999999999999999998888766655421  1223357787654

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=90.46  E-value=2.9  Score=30.47  Aligned_cols=87  Identities=18%  Similarity=0.152  Sum_probs=53.5

Q ss_pred             CCeEEEecCCc-hHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCCC-------CCCccEEeehhhhcc
Q 041250          115 LNSLVDVGGGT-GTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKA-------ISPAYAVLLKWILLD  185 (259)
Q Consensus       115 ~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~-------~~~~D~~~~~~vlh~  185 (259)
                      ..+|+=+|+|. |......+.+. +.+++++|. ++.++.+++  ..+.++.+|..++       ..++|++++.     
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~-g~~v~vid~~~~~~~~~~~--~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~-----   78 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLAS-DIPLVVIETSRTRVDELRE--RGVRAVLGNAANEEIMQLAHLECAKWLILT-----   78 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHT-TCCEEEEESCHHHHHHHHH--TTCEEEESCTTSHHHHHHTTGGGCSEEEEC-----
T ss_pred             CCCEEEECcCHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHH--cCCCEEECCCCCHHHHHhcCcccCCEEEEE-----
Confidence            35788888865 44333333333 568999998 777776663  4677888998763       1247887765     


Q ss_pred             CC-hHHHHHHHHHHHHhcccCCCCcEEEE
Q 041250          186 WN-DEECVKILKKCKEAITRDGKKRKVII  213 (259)
Q Consensus       186 ~~-d~~~~~il~~~~~~L~p~~~gg~lli  213 (259)
                      .+ ++....+.. ..+.+.|   +.+++.
T Consensus        79 ~~~~~~n~~~~~-~a~~~~~---~~~iia  103 (140)
T 3fwz_A           79 IPNGYEAGEIVA-SARAKNP---DIEIIA  103 (140)
T ss_dssp             CSCHHHHHHHHH-HHHHHCS---SSEEEE
T ss_pred             CCChHHHHHHHH-HHHHHCC---CCeEEE
Confidence            33 333434444 4555666   566544

>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A

Probab=90.35  E-value=0.015  Score=41.25  Aligned_cols=58  Identities=12%  Similarity=0.142  Sum_probs=42.8

Q ss_pred             HHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCC--CCceeecCHh
Q 041250            6 AFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNND--EEQGYVLTNA   65 (259)
Q Consensus         6 a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~--~~~~y~~t~~   65 (259)
                      -.++.|+..|..  ++.|+.|||+.+|+++..+++.|+.+...+++..+.  ....|++++.
T Consensus        26 ~~r~~IL~~L~~--~~~~~~ela~~l~is~stvs~~L~~L~~~Glv~~~~~gr~~~y~l~~~   85 (106)
T 1r1u_A           26 YNRIRIMELLSV--SEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDDI   85 (106)
T ss_dssp             HHHHHHHHHHHH--CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEESSH
T ss_pred             HHHHHHHHHHHh--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChH
Confidence            356788888885  789999999999999999999888776665542111  2225777654

>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}

Probab=90.18  E-value=0.014  Score=42.24  Aligned_cols=62  Identities=10%  Similarity=0.079  Sum_probs=46.2

Q ss_pred             HHHHHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCC--CCCceeecCHhh
Q 041250            3 LKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNN--DEEQGYVLTNAS   66 (259)
Q Consensus         3 L~~a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~--~~~~~y~~t~~~   66 (259)
                      |..-.++.|+..|..  ++.|+.|||+.+|+++..+++-|+.|...+++..+  ...-.|++++..
T Consensus        15 l~~~~R~~Il~~L~~--~~~~~~eLa~~l~is~~tvs~hL~~L~~~GlV~~~~~gr~~~y~l~~~~   78 (118)
T 3f6o_A           15 LADPTRRAVLGRLSR--GPATVSELAKPFDMALPSFMKHIHFLEDSGWIRTHKQGRVRTCAIEKEP   78 (118)
T ss_dssp             HTSHHHHHHHHHHHT--CCEEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHH
T ss_pred             hCCHHHHHHHHHHHh--CCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEecCCEEEEEECHHH
Confidence            334567889999985  89999999999999999999988887666654211  223357777644

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=89.73  E-value=0.32  Score=41.24  Aligned_cols=92  Identities=25%  Similarity=0.237  Sum_probs=56.2

Q ss_pred             CCCeEEEecCCchHHHHHH----HHHCCCCe--EEEeec-h--------HHHhh-c-------cc-CCCCe--EEEeCCC
Q 041250          114 GLNSLVDVGGGTGTAAKAI----AKAFPKLE--CTCFDL-P--------HVVNG-L-------ES-DLVNL--KYVGGDM  167 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l----~~~~p~~~--~~~~D~-~--------~~~~~-a-------~~-~~~ri--~~~~~d~  167 (259)
                      ..-+|+|+|=|+|......    .+..|+.+  ++.++. |        +.... .       .. ...+|  .+.-||.
T Consensus        96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa  175 (308)
T 3vyw_A           96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDA  175 (308)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCH
T ss_pred             CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechH
Confidence            3468999999999876543    34578765  566653 1        10000 0       00 23444  4577888


Q ss_pred             CCC---CC--CccEEeehhh-----hccCChHHHHHHHHHHHHhcccCCCCcEEE
Q 041250          168 FKA---IS--PAYAVLLKWI-----LLDWNDEECVKILKKCKEAITRDGKKRKVI  212 (259)
Q Consensus       168 ~~~---~~--~~D~~~~~~v-----lh~~~d~~~~~il~~~~~~L~p~~~gg~ll  212 (259)
                      .+.   ++  .+|++++--.     -..|+    ..+++++++.++|   ||.+.
T Consensus       176 ~~~l~~l~~~~~Da~flDgFsP~kNPeLWs----~e~f~~l~~~~~p---gg~la  223 (308)
T 3vyw_A          176 RKRIKEVENFKADAVFHDAFSPYKNPELWT----LDFLSLIKERIDE---KGYWV  223 (308)
T ss_dssp             HHHGGGCCSCCEEEEEECCSCTTTSGGGGS----HHHHHHHHTTEEE---EEEEE
T ss_pred             HHHHhhhcccceeEEEeCCCCcccCcccCC----HHHHHHHHHHhCC---CcEEE
Confidence            762   33  4898887531     11244    3689999999999   77654

>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55

Probab=89.66  E-value=0.05  Score=41.10  Aligned_cols=47  Identities=13%  Similarity=-0.027  Sum_probs=36.2

Q ss_pred             CCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhh
Q 041250           20 KPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNAS   66 (259)
Q Consensus        20 ~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~   66 (259)
                      ++.|.++||+.+++++..+.+++..|.-.+++......|.|.++...
T Consensus        29 ~~~~~~~iA~~~~i~~~~l~kil~~L~~~Glv~s~rG~GGy~L~~~p   75 (149)
T 1ylf_A           29 SLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGPGGAGLLKDL   75 (149)
T ss_dssp             GGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC---CCEEESSCG
T ss_pred             CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEccCCCceEeCCCh
Confidence            68999999999999999999999988776655322226788887644

>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0

Probab=89.56  E-value=0.12  Score=39.61  Aligned_cols=47  Identities=17%  Similarity=0.139  Sum_probs=37.9

Q ss_pred             CCCCHHHHHHHcCCCccccccceeccccccCCCC-CCCCceeecCHhh
Q 041250           20 KPMTLNELVSALTINLSKTQCFFAQQKLVSSGNN-NDEEQGYVLTNAS   66 (259)
Q Consensus        20 ~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~-~~~~~~y~~t~~~   66 (259)
                      +++|.++||+.+++++..+.+++..|.-.+++.. ...+|.|.+....
T Consensus        27 ~~~s~~~IA~~~~is~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p   74 (162)
T 3k69_A           27 SKVASRELAQSLHLNPVMIRNILSVLHKHGYLTGTVGKNGGYQLDLAL   74 (162)
T ss_dssp             SCBCHHHHHHHHTSCGGGTHHHHHHHHHTTSSEEECSTTCEEECCSCG
T ss_pred             CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecCCCCCeEecCCh
Confidence            6899999999999999999999998877666532 3456779887654

>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28

Probab=89.49  E-value=0.028  Score=38.89  Aligned_cols=64  Identities=9%  Similarity=0.084  Sum_probs=47.0

Q ss_pred             HHHHHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCC-----CCCCceeecCHhhh
Q 041250            3 LKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNN-----NDEEQGYVLTNASK   67 (259)
Q Consensus         3 L~~a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~-----~~~~~~y~~t~~~~   67 (259)
                      +..-.++.|+..|... ++.|..|||+.+|+++..+.+.++.+...+++..     +.....|.+|+.+.
T Consensus        13 l~~~~~~~iL~~L~~~-~~~~~~ela~~l~is~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~g~   81 (100)
T 1ub9_A           13 LGNPVRLGIMIFLLPR-RKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGM   81 (100)
T ss_dssp             HHSHHHHHHHHHHHHH-SEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHH
T ss_pred             cCChHHHHHHHHHHhc-CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCCcceEEEEECHHHH
Confidence            4455678888888643 7899999999999999999998887765554321     11223688888874

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*

Probab=89.47  E-value=0.37  Score=42.85  Aligned_cols=60  Identities=23%  Similarity=0.365  Sum_probs=39.5

Q ss_pred             cCchHHHHHHHHHHhcchhhhHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCC-----CCeEEEeechHH
Q 041250           81 DESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFP-----KLECTCFDLPHV  149 (259)
Q Consensus        81 ~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p-----~~~~~~~D~~~~  149 (259)
                      +.|+....|...++.+       +.+.+.  ..+..+|+++|+|+|.++..+++...     ..++..++.++.
T Consensus       113 TAPeiS~~FGe~la~~-------~~~~~~--~~g~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~  177 (432)
T 4f3n_A          113 TAPELSPLFAQTLARP-------VAQALD--ASGTRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGE  177 (432)
T ss_dssp             SCGGGHHHHHHHHHHH-------HHHHHH--HHTCCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSS
T ss_pred             CchhhhHHHHHHHHHH-------HHHHHH--hcCCCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHH
Confidence            5677777777765443       222222  12256899999999999999876431     237899998433

>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0

Probab=89.47  E-value=0.032  Score=39.92  Aligned_cols=60  Identities=12%  Similarity=0.091  Sum_probs=45.4

Q ss_pred             HcCcchhhhcCCCCCC--HHHHHHHc-CCCccccccceeccccccCCCCC-CCCceeecCHhhhhh
Q 041250            8 QLGIPDIINKHGKPMT--LNELVSAL-TINLSKTQCFFAQQKLVSSGNNN-DEEQGYVLTNASKLL   69 (259)
Q Consensus         8 ~l~lf~~L~~~~~~~t--~~elA~~~-~~~~~~l~~ll~~~~~~~~~~~~-~~~~~y~~t~~~~~l   69 (259)
                      ++.|+..|..  |+.+  +.||++.+ |+++..+++-|+.|...+++... .....|++|+.++.+
T Consensus        29 rl~IL~~L~~--g~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~r~~~y~LT~~G~~l   92 (111)
T 3df8_A           29 TMLIISVLGN--GSTRQNFNDIRSSIPGISSTILSRRIKDLIDSGLVERRSGQITTYALTEKGMNV   92 (111)
T ss_dssp             HHHHHHHHTS--SSSCBCHHHHHHTSTTCCHHHHHHHHHHHHHTTSEEEEESSSEEEEECHHHHHH
T ss_pred             HHHHHHHHhc--CCCCCCHHHHHHHccCCCHHHHHHHHHHHHHCCCEEEeecCcEEEEECccHHHH
Confidence            4556677774  7888  99999999 99999999988887766654211 134579999988744

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=88.91  E-value=0.52  Score=41.61  Aligned_cols=43  Identities=14%  Similarity=0.157  Sum_probs=34.7

Q ss_pred             CCCCeEEEecCCchHHHHHHH-HHCCC-CeEEEeec-hHHHhhccc
Q 041250          113 EGLNSLVDVGGGTGTAAKAIA-KAFPK-LECTCFDL-PHVVNGLES  155 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~-~~~p~-~~~~~~D~-~~~~~~a~~  155 (259)
                      ++..+++|||++.|.++..++ +..+. .+++.++- |...+..++
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~  270 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQN  270 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHH
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHH
Confidence            567899999999999999988 66765 78999997 766655443

>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73

Probab=88.85  E-value=0.061  Score=35.98  Aligned_cols=42  Identities=14%  Similarity=0.186  Sum_probs=34.0

Q ss_pred             cCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCC
Q 041250            9 LGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSG   51 (259)
Q Consensus         9 l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~   51 (259)
                      ..|++.|... ++.|..|||+.+|+++..+++.|..|...+++
T Consensus         3 ~~Il~~L~~~-~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI   44 (81)
T 2htj_A            3 NEILEFLNRH-NGGKTAEIAEALAVTDYQARYYLLLLEKAGMV   44 (81)
T ss_dssp             HHHHHHHHHS-CCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSE
T ss_pred             HHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCE
Confidence            3467777764 78999999999999999999988887665544

>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}

Probab=88.76  E-value=0.029  Score=39.97  Aligned_cols=60  Identities=10%  Similarity=0.053  Sum_probs=43.8

Q ss_pred             HHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCC--CCCceeecCHhhh
Q 041250            6 AFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNN--DEEQGYVLTNASK   67 (259)
Q Consensus         6 a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~--~~~~~y~~t~~~~   67 (259)
                      -.++.|+..|..  ++.|+.|||+.+|+++..+.+.+..+...+++...  .....|.+|+.+.
T Consensus        21 ~~r~~IL~~L~~--~~~~~~ela~~l~is~~tv~~~l~~L~~~gli~~~~~gr~~~y~l~~~~~   82 (114)
T 2oqg_A           21 ETRWEILTELGR--ADQSASSLATRLPVSRQAIAKHLNALQACGLVESVKVGREIRYRALGAEL   82 (114)
T ss_dssp             HHHHHHHHHHHH--SCBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHHH
T ss_pred             hHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEecCCEEEEEechHHH
Confidence            356778888854  78999999999999999999988887766554211  1123477776653

>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}

Probab=88.74  E-value=0.072  Score=38.99  Aligned_cols=47  Identities=13%  Similarity=0.170  Sum_probs=35.9

Q ss_pred             CCCCHHHHHHHcCCCccccccceeccccccCCCCC-CCCceeecCHhh
Q 041250           20 KPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNN-DEEQGYVLTNAS   66 (259)
Q Consensus        20 ~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~-~~~~~y~~t~~~   66 (259)
                      ++.|..|||+.+|+++..+.+++..|...+++... ...|.|.++...
T Consensus        25 ~~~s~~ela~~~~i~~~~v~~il~~L~~~Glv~~~~g~~ggy~L~~~~   72 (129)
T 2y75_A           25 GPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSIRGAYGGYVLGSEP   72 (129)
T ss_dssp             CCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEC----CCEEESSCG
T ss_pred             CcCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEecCCCCCceEeCCCH
Confidence            68999999999999999999999988777655322 234778887543

>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}

Probab=88.47  E-value=0.082  Score=40.47  Aligned_cols=47  Identities=13%  Similarity=0.242  Sum_probs=37.6

Q ss_pred             CCCCHHHHHHHcCCCccccccceeccccccCCCC-CCCCceeecCHhh
Q 041250           20 KPMTLNELVSALTINLSKTQCFFAQQKLVSSGNN-NDEEQGYVLTNAS   66 (259)
Q Consensus        20 ~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~-~~~~~~y~~t~~~   66 (259)
                      ++.|.++||+.+++++..+.+++..|.-.+++.. ...+|.|.++...
T Consensus        43 ~~~s~~eIA~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p   90 (159)
T 3lwf_A           43 GPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRGAHGGYVLNGDP   90 (159)
T ss_dssp             CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECSTTCEEEECSCT
T ss_pred             CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEecCCCCceEecCCH
Confidence            6899999999999999999999998877665432 3456779887543

>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A

Probab=88.45  E-value=0.015  Score=41.39  Aligned_cols=58  Identities=16%  Similarity=0.183  Sum_probs=42.4

Q ss_pred             HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCC--CCceeecCHhh
Q 041250            7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNND--EEQGYVLTNAS   66 (259)
Q Consensus         7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~--~~~~y~~t~~~   66 (259)
                      .++.|+..|..  ++.|+.|||+.+|+++..+++.|+.|...+++..+.  ....|.+++..
T Consensus        26 ~r~~IL~~L~~--~~~s~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~gr~~~y~l~~~~   85 (108)
T 2kko_A           26 RRLQILDLLAQ--GERAVEAIATATGMNLTTASANLQALKSGGLVEARREGTRQYYRIAGED   85 (108)
T ss_dssp             TTHHHHHHHTT--CCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEEETTEEEEEESCHH
T ss_pred             HHHHHHHHHHc--CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChHH
Confidence            45667888875  799999999999999999999888877666542111  22357776543

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=88.37  E-value=0.88  Score=37.55  Aligned_cols=94  Identities=17%  Similarity=0.204  Sum_probs=63.7

Q ss_pred             CCeEEEecCCchHHHHHHHHH-------CCCCeEEEeec----hHH------------------------Hhhc------
Q 041250          115 LNSLVDVGGGTGTAAKAIAKA-------FPKLECTCFDL----PHV------------------------VNGL------  153 (259)
Q Consensus       115 ~~~vlDvGgG~G~~~~~l~~~-------~p~~~~~~~D~----~~~------------------------~~~a------  153 (259)
                      +..|+++|+-.|.-+..++..       .++-++.++|-    |+.                        +...      
T Consensus        70 pG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~  149 (257)
T 3tos_A           70 PGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHEC  149 (257)
T ss_dssp             CSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHT
T ss_pred             CCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhh
Confidence            569999999999988887652       46778999993    321                        1100      


Q ss_pred             -cc---CCCCeEEEeCCCCCCC-------C--CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250          154 -ES---DLVNLKYVGGDMFKAI-------S--PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKD  215 (259)
Q Consensus       154 -~~---~~~ri~~~~~d~~~~~-------~--~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e  215 (259)
                       +.   ..++|+++.|++.+..       |  .+|++++-.   ++ -+.....+..+...|.|   ||.|++-|
T Consensus       150 ~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~---D~-Y~~t~~~le~~~p~l~~---GGvIv~DD  217 (257)
T 3tos_A          150 SDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDL---DL-YEPTKAVLEAIRPYLTK---GSIVAFDE  217 (257)
T ss_dssp             TSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECC---CC-HHHHHHHHHHHGGGEEE---EEEEEESS
T ss_pred             hhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcC---cc-cchHHHHHHHHHHHhCC---CcEEEEcC
Confidence             01   2489999999998722       2  378777664   22 13345789999999999   55554444

>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*

Probab=88.24  E-value=0.11  Score=36.42  Aligned_cols=39  Identities=13%  Similarity=0.060  Sum_probs=33.6

Q ss_pred             HHHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceecc
Q 041250            5 CAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQ   45 (259)
Q Consensus         5 ~a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~   45 (259)
                      .+.++||+..|..  |+.|..|||+.+|++...++|+=+++
T Consensus        44 l~~R~~l~~~L~~--ge~TQREIA~~lGiS~stISRi~r~L   82 (101)
T 1jhg_A           44 LGTRVRIIEELLR--GEMSQRELKNELGAGIATITRGSNSL   82 (101)
T ss_dssp             HHHHHHHHHHHHH--CCSCHHHHHHHHCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc--CCcCHHHHHHHHCCChhhhhHHHHHH
Confidence            4678999999987  78999999999999999999974444

>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69

Probab=88.14  E-value=0.07  Score=37.74  Aligned_cols=59  Identities=14%  Similarity=0.043  Sum_probs=43.2

Q ss_pred             cCcchhhhcCCCCCCHHHHHHHc-CCCccccccceeccccccCCCCC-----CCCceeecCHhhhhh
Q 041250            9 LGIPDIINKHGKPMTLNELVSAL-TINLSKTQCFFAQQKLVSSGNNN-----DEEQGYVLTNASKLL   69 (259)
Q Consensus         9 l~lf~~L~~~~~~~t~~elA~~~-~~~~~~l~~ll~~~~~~~~~~~~-----~~~~~y~~t~~~~~l   69 (259)
                      +.|+..|..  ++.+..|||+.+ |+++..+.+.|+.|...+++...     ...-.|.+|+.++.+
T Consensus        17 ~~IL~~L~~--~~~~~~eLa~~l~~is~~tls~~L~~Le~~GlI~r~~~~~d~r~~~y~LT~~G~~l   81 (107)
T 2hzt_A           17 XVILXHLTH--GKKRTSELKRLMPNITQKMLTQQLRELEADGVINRIVYNQVPPKVEYELSEYGRSL   81 (107)
T ss_dssp             HHHHHHHTT--CCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGG
T ss_pred             HHHHHHHHh--CCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECccHHHH
Confidence            345666764  799999999999 99999999988887766654211     122358999887644

>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}

Probab=87.91  E-value=0.034  Score=42.26  Aligned_cols=63  Identities=10%  Similarity=0.009  Sum_probs=47.2

Q ss_pred             HHHHHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCC--CCCceeecCHhhh
Q 041250            3 LKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNN--DEEQGYVLTNASK   67 (259)
Q Consensus         3 L~~a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~--~~~~~y~~t~~~~   67 (259)
                      |..-.++.|+..|..  ++.|+.|||+.+|+++..+++-|+.|...+++..+  ...-.|++|+.+.
T Consensus        55 L~~p~R~~IL~~L~~--~~~t~~eLa~~lgls~stvs~hL~~L~~aGlV~~~~~Gr~~~y~lt~~~~  119 (151)
T 3f6v_A           55 AAEPTRRRLVQLLTS--GEQTVNNLAAHFPASRSAISQHLRVLTEAGLVTPRKDGRFRYYRLDPQGL  119 (151)
T ss_dssp             HTSHHHHHHHHHGGG--CCEEHHHHHTTSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHH
T ss_pred             hCCHHHHHHHHHHHh--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCEEEEEEChHHH
Confidence            334568889999985  89999999999999999999988887766654211  1223588887653

>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}

Probab=87.62  E-value=0.084  Score=36.09  Aligned_cols=39  Identities=10%  Similarity=0.209  Sum_probs=32.7

Q ss_pred             cchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccC
Q 041250           11 IPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSS   50 (259)
Q Consensus        11 lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~   50 (259)
                      |.+.|.+. |.+|+.|||+.+++++..++|-|+.+...+.
T Consensus         7 Il~~L~~~-g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~   45 (87)
T 2k02_A            7 VRDMLALQ-GRMEAKQLSARLQTPQPLIDAMLERMEAMGK   45 (87)
T ss_dssp             HHHHHHHS-CSEEHHHHHHHTTCCHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHc-CCCcHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence            56778775 8999999999999999999998887765543

>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A

Probab=87.31  E-value=0.047  Score=39.77  Aligned_cols=57  Identities=11%  Similarity=0.166  Sum_probs=42.7

Q ss_pred             HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCC--CCceeecCHh
Q 041250            7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNND--EEQGYVLTNA   65 (259)
Q Consensus         7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~--~~~~y~~t~~   65 (259)
                      .++.|+..|.+  ++.++.|||+.+|+++..+++.|+.|...+++..+.  ..-.|++++.
T Consensus        47 ~rl~IL~~L~~--~~~s~~ela~~lgis~stvs~~L~~Le~~Glv~~~~~gr~~~y~l~~~  105 (122)
T 1r1t_A           47 NRLRLLSLLAR--SELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQGRHVYYQLQDH  105 (122)
T ss_dssp             HHHHHHHHHTT--CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEESSH
T ss_pred             HHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChH
Confidence            56788999985  799999999999999999999888776665442121  2235777654

>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62

Probab=87.29  E-value=0.089  Score=35.18  Aligned_cols=38  Identities=11%  Similarity=0.198  Sum_probs=32.1

Q ss_pred             cchhhhcCCCCCCHHHHHHHcCCCccccccceecccccc
Q 041250           11 IPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVS   49 (259)
Q Consensus        11 lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~   49 (259)
                      |.+.|.+. +.+|++|||+.+++++..++|-|+.+...+
T Consensus         7 Il~~L~~~-g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G   44 (78)
T 1xn7_A            7 VRDLLALR-GRMEAAQISQTLNTPQPMINAMLQQLESMG   44 (78)
T ss_dssp             HHHHHHHS-CSBCHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHc-CCCcHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence            56778775 899999999999999999999887766544

>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A

Probab=86.88  E-value=0.097  Score=39.25  Aligned_cols=47  Identities=9%  Similarity=0.080  Sum_probs=37.4

Q ss_pred             CCCCHHHHHHHcCCCccccccceeccccccCCCC-CCCCceeecCHhh
Q 041250           20 KPMTLNELVSALTINLSKTQCFFAQQKLVSSGNN-NDEEQGYVLTNAS   66 (259)
Q Consensus        20 ~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~-~~~~~~y~~t~~~   66 (259)
                      ++.|.++||+.+++++..+.+++..|.-.+++.. ...+|.|.+....
T Consensus        27 ~~~s~~~IA~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p   74 (143)
T 3t8r_A           27 GCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSVRGAKGGYQLRVPA   74 (143)
T ss_dssp             CCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECSSSSSEEEESSCG
T ss_pred             CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCEEEecCCCCCCeeecCCc
Confidence            5899999999999999999999998877665432 3445789887644

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=86.26  E-value=2.8  Score=35.50  Aligned_cols=93  Identities=18%  Similarity=0.134  Sum_probs=60.5

Q ss_pred             cCCCCeEEEecCCc-hHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeC--CCCCC----CCCccEEeehhhh
Q 041250          112 FEGLNSLVDVGGGT-GTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGG--DMFKA----ISPAYAVLLKWIL  183 (259)
Q Consensus       112 ~~~~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~--d~~~~----~~~~D~~~~~~vl  183 (259)
                      .....+||-+|+|. |.++..+++.. +.++++.|. ++-.+.+++......+-..  |+.+.    .+++|+++.... 
T Consensus       164 ~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vid~~g-  241 (340)
T 3s2e_A          164 TRPGQWVVISGIGGLGHVAVQYARAM-GLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVLVTAV-  241 (340)
T ss_dssp             CCTTSEEEEECCSTTHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEESSC-
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEEEEeCC-
Confidence            56667888899765 99999999987 459999997 7777777763322222111  11110    124777765421 


Q ss_pred             ccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          184 LDWNDEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       184 h~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                         .    ...++.+.+.|+|   +|+++++-.
T Consensus       242 ---~----~~~~~~~~~~l~~---~G~iv~~G~  264 (340)
T 3s2e_A          242 ---S----PKAFSQAIGMVRR---GGTIALNGL  264 (340)
T ss_dssp             ---C----HHHHHHHHHHEEE---EEEEEECSC
T ss_pred             ---C----HHHHHHHHHHhcc---CCEEEEeCC
Confidence               1    2467888899999   899887654

>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A

Probab=86.23  E-value=0.13  Score=37.94  Aligned_cols=59  Identities=12%  Similarity=0.000  Sum_probs=43.7

Q ss_pred             CcchhhhcCCCCCCHHHHHHHc-CCCccccccceeccccccCCCCC-----CCCceeecCHhhhhhh
Q 041250           10 GIPDIINKHGKPMTLNELVSAL-TINLSKTQCFFAQQKLVSSGNNN-----DEEQGYVLTNASKLLL   70 (259)
Q Consensus        10 ~lf~~L~~~~~~~t~~elA~~~-~~~~~~l~~ll~~~~~~~~~~~~-----~~~~~y~~t~~~~~l~   70 (259)
                      -|+..|..  |+.+..||++.+ |+++..+.+.|+.|...+++...     ...-.|++|+.++.|.
T Consensus        30 ~IL~~L~~--g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~~GLV~R~~~~~d~r~v~y~LT~~G~~l~   94 (131)
T 4a5n_A           30 ILFYHMID--GKKRFNEFRRICPSITQRMLTLQLRELEADGIVHREVYHQVPPKVEYSLTEFGRTLE   94 (131)
T ss_dssp             HHHHHHTT--SCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGH
T ss_pred             HHHHHHhc--CCcCHHHHHHHhcccCHHHHHHHHHHHHHCCCEEEEecCCCCCeEEEEECHhHHHHH
Confidence            34555654  899999999999 99999999999888766654211     1224699999988653

>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*

Probab=86.00  E-value=0.11  Score=38.41  Aligned_cols=49  Identities=16%  Similarity=0.155  Sum_probs=39.2

Q ss_pred             CCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhhhhh
Q 041250           20 KPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASKLL   69 (259)
Q Consensus        20 ~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~~~l   69 (259)
                      ++.|+.+||+.+|+++..+.+.++.|...+++. ....+.|.+|+.+..+
T Consensus        21 ~~~~~~ela~~l~vs~~tvs~~l~~Le~~Glv~-r~~~~~~~LT~~g~~~   69 (142)
T 1on2_A           21 GYARVSDIAEALAVHPSSVTKMVQKLDKDEYLI-YEKYRGLVLTSKGKKI   69 (142)
T ss_dssp             SSCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE-EETTTEEEECHHHHHH
T ss_pred             CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE-EeeCceEEEchhHHHH
Confidence            789999999999999999999998887666542 2234679999988644

>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69

Probab=85.94  E-value=0.12  Score=38.78  Aligned_cols=58  Identities=14%  Similarity=-0.001  Sum_probs=42.3

Q ss_pred             CcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCC----CCceeecCHhhhhh
Q 041250           10 GIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNND----EEQGYVLTNASKLL   69 (259)
Q Consensus        10 ~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~----~~~~y~~t~~~~~l   69 (259)
                      .|+..|..  ++.+..||++.+|+++..+.+.|+.|...+++....    ..-.|.+|+.++.+
T Consensus        28 ~IL~~L~~--g~~~~~eLa~~lgis~~tls~~L~~Le~~GlI~r~~~~~d~~~~y~LT~~G~~l   89 (146)
T 2f2e_A           28 LIVRDAFE--GLTRFGEFQKSLGLAKNILAARLRNLVEHGVMVAVPAESGSHQEYRLTDKGRAL   89 (146)
T ss_dssp             HHHHHHHT--TCCSHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSSSSCEEEEECHHHHTT
T ss_pred             HHHHHHHh--CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEEecCCCCeEEEEECchHHHH
Confidence            35556654  799999999999999999999888877665542111    13468999887644

>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}

Probab=85.89  E-value=0.063  Score=35.82  Aligned_cols=40  Identities=18%  Similarity=0.384  Sum_probs=31.4

Q ss_pred             cchhhhcC-----CCCCCHHHHHHHcCCCccccccceeccccccC
Q 041250           11 IPDIINKH-----GKPMTLNELVSALTINLSKTQCFFAQQKLVSS   50 (259)
Q Consensus        11 lf~~L~~~-----~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~   50 (259)
                      |++.|.+.     |+|.|+.|||+.+|+++..+.+-|..|..-++
T Consensus         9 IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~Le~kG~   53 (77)
T 2jt1_A            9 IISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQLHDVGV   53 (77)
T ss_dssp             HHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCc
Confidence            55566554     68999999999999999888888877765443

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=85.88  E-value=3.7  Score=34.62  Aligned_cols=83  Identities=18%  Similarity=0.125  Sum_probs=51.2

Q ss_pred             CeEEEecCCc--hHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCC-CCCCccEEeehhhhccCChHHH
Q 041250          116 NSLVDVGGGT--GTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK-AISPAYAVLLKWILLDWNDEEC  191 (259)
Q Consensus       116 ~~vlDvGgG~--G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~~~~D~~~~~~vlh~~~d~~~  191 (259)
                      .+|.=||+|.  +.++..+.+.....+++++|. ++.++.+.+..- +.-...|..+ -...+|+|++.     .+....
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~-~~~~~~~~~~~~~~~aDvVila-----vp~~~~  107 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGI-IDEGTTSIAKVEDFSPDFVMLS-----SPVRTF  107 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTS-CSEEESCTTGGGGGCCSEEEEC-----SCGGGH
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCC-cchhcCCHHHHhhccCCEEEEe-----CCHHHH
Confidence            5788899774  334444555433338999998 666666654211 1111233333 24468999887     444556


Q ss_pred             HHHHHHHHHhccc
Q 041250          192 VKILKKCKEAITR  204 (259)
Q Consensus       192 ~~il~~~~~~L~p  204 (259)
                      ..+++++...++|
T Consensus       108 ~~vl~~l~~~l~~  120 (314)
T 3ggo_A          108 REIAKKLSYILSE  120 (314)
T ss_dssp             HHHHHHHHHHSCT
T ss_pred             HHHHHHHhhccCC
Confidence            7788999999988

>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19

Probab=85.87  E-value=0.1  Score=35.17  Aligned_cols=59  Identities=10%  Similarity=0.060  Sum_probs=41.2

Q ss_pred             HHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCC-CCCCceeecCHhh
Q 041250            6 AFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNN-NDEEQGYVLTNAS   66 (259)
Q Consensus         6 a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~-~~~~~~y~~t~~~   66 (259)
                      .....|.+.|..+ + .|+.|||+++|++...+.+.|..|..-+++.. ...+-.|.++..+
T Consensus        17 ~~~~~IL~lL~~~-g-~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~~~~~PP~W~~~~~~   76 (82)
T 1oyi_A           17 EIVCEAIKTIGIE-G-ATAAQLTRQLNMEKREVNKALYDLQRSAMVYSSDDIPPRWFMTTEA   76 (82)
T ss_dssp             HHHHHHHHHHSSS-T-EEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEECSSSSCEEESCC--
T ss_pred             HHHHHHHHHHHHc-C-CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCCCCCCcceeccCc
Confidence            3456678889874 4 99999999999999999998887755444321 2344567766543

>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69

Probab=85.68  E-value=0.1  Score=37.21  Aligned_cols=59  Identities=19%  Similarity=0.101  Sum_probs=43.4

Q ss_pred             cCcchhhhcCCCCCCHHHHHHHc-CCCccccccceeccccccCCCCC-----CCCceeecCHhhhhh
Q 041250            9 LGIPDIINKHGKPMTLNELVSAL-TINLSKTQCFFAQQKLVSSGNNN-----DEEQGYVLTNASKLL   69 (259)
Q Consensus         9 l~lf~~L~~~~~~~t~~elA~~~-~~~~~~l~~ll~~~~~~~~~~~~-----~~~~~y~~t~~~~~l   69 (259)
                      +.|+..|..  ++.+..|||+.+ ++++..+.+.|+.|...+++...     ...-.|.+|+.++.+
T Consensus        25 ~~IL~~L~~--~~~~~~eLa~~l~~is~~tvs~~L~~Le~~GlI~r~~~~~d~r~~~~~LT~~G~~~   89 (112)
T 1z7u_A           25 LSLMDELFQ--GTKRNGELMRALDGITQRVLTDRLREMEKDGLVHRESFNELPPRVEYTLTPEGYAL   89 (112)
T ss_dssp             HHHHHHHHH--SCBCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEEEECCSSCEEEEEECHHHHHH
T ss_pred             HHHHHHHHh--CCCCHHHHHHHhccCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECHhHHHH
Confidence            345666765  799999999999 99999999988887665544211     122359999988744

>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55

Probab=85.68  E-value=0.13  Score=38.63  Aligned_cols=46  Identities=11%  Similarity=0.061  Sum_probs=36.1

Q ss_pred             CCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhh
Q 041250           20 KPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNAS   66 (259)
Q Consensus        20 ~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~   66 (259)
                      ++ |.++||+..++++..+.++|..|.-.+++......|.|.+....
T Consensus        23 ~~-s~~~IA~~~~i~~~~l~kIl~~L~~aGlv~s~rG~GGy~Lar~p   68 (145)
T 1xd7_A           23 KT-SSEIIADSVNTNPVVVRRMISLLKKADILTSRAGVPGASLKKDP   68 (145)
T ss_dssp             CC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEECCSSSSSCEESSCG
T ss_pred             CC-CHHHHHHHHCcCHHHHHHHHHHHHHCCceEeecCCCCceecCCH
Confidence            35 99999999999999999999988776655332227789887654

>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69

Probab=85.58  E-value=0.081  Score=39.04  Aligned_cols=61  Identities=10%  Similarity=0.019  Sum_probs=45.0

Q ss_pred             HHcCcchhhhcCCCCCCHHHHHHHc-CCCccccccceeccccccCCCCC-----CCCceeecCHhhhhh
Q 041250            7 FQLGIPDIINKHGKPMTLNELVSAL-TINLSKTQCFFAQQKLVSSGNNN-----DEEQGYVLTNASKLL   69 (259)
Q Consensus         7 ~~l~lf~~L~~~~~~~t~~elA~~~-~~~~~~l~~ll~~~~~~~~~~~~-----~~~~~y~~t~~~~~l   69 (259)
                      .++.|+..|..  ++.+..||++.+ |+++..+.+.|+.|...+++...     ...-.|.+|+.++.+
T Consensus        36 w~l~IL~~L~~--g~~~~~eLa~~l~gis~~tls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l  102 (131)
T 1yyv_A           36 WGVLILVALRD--GTHRFSDLRRXMGGVSEXMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPLGEQV  102 (131)
T ss_dssp             HHHHHHHHGGG--CCEEHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEEECHHHHHH
T ss_pred             cHHHHHHHHHc--CCCCHHHHHHHhccCCHHHHHHHHHHHHHCCcEEEEecCCCCCeEEEEECccHHHH
Confidence            34456667764  799999999999 79999999999887766654211     122369999988754

>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}

Probab=84.99  E-value=0.15  Score=37.74  Aligned_cols=63  Identities=10%  Similarity=0.067  Sum_probs=45.7

Q ss_pred             HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCC-----CCCceeecCHhhhhhh
Q 041250            7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNN-----DEEQGYVLTNASKLLL   70 (259)
Q Consensus         7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~-----~~~~~y~~t~~~~~l~   70 (259)
                      .++.++..|... ++.|..+||+.+++++..+.+.++.+..-+++..+     .....+.+|+.++.+.
T Consensus        41 ~~~~iL~~l~~~-~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~~G~~~~  108 (148)
T 3nrv_A           41 TEWRIISVLSSA-SDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELY  108 (148)
T ss_dssp             HHHHHHHHHHHS-SSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC---------CCBEECHHHHHHH
T ss_pred             HHHHHHHHHHcC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCcceeEeEECHhHHHHH
Confidence            355667777764 69999999999999999999998887766554222     1234588999887544

>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A

Probab=84.91  E-value=0.16  Score=37.42  Aligned_cols=63  Identities=8%  Similarity=0.071  Sum_probs=42.4

Q ss_pred             HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCC--CCC---ceeecCHhhhhhh
Q 041250            7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNN--DEE---QGYVLTNASKLLL   70 (259)
Q Consensus         7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~--~~~---~~y~~t~~~~~l~   70 (259)
                      .++.++..|... ++.|..+||+.+++++..+.++++.|..-+++...  ..+   -.+.+|+.++.+.
T Consensus        38 ~~~~vL~~l~~~-~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~  105 (142)
T 3ech_A           38 PDVHVLKLIDEQ-RGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIH  105 (142)
T ss_dssp             HHHHHHHHHHHT-TTCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC----------CCEECHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeeccCCCCCCeeeeEECHHHHHHH
Confidence            455677778775 68999999999999999999999887766654221  112   2478898887543

>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}

Probab=84.89  E-value=0.082  Score=34.92  Aligned_cols=40  Identities=18%  Similarity=0.299  Sum_probs=34.7

Q ss_pred             HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccc
Q 041250            7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQK   46 (259)
Q Consensus         7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~   46 (259)
                      .+-.|++.|.+.|.|++..|||+++|++...+.+.|..|.
T Consensus        20 ~eekVLe~LkeaG~PlkageIae~~GvdKKeVdKaik~LK   59 (80)
T 2lnb_A           20 LEQRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMK   59 (80)
T ss_dssp             HHHHHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence            3556888999888999999999999999999999887764

>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}

Probab=84.69  E-value=0.15  Score=37.44  Aligned_cols=49  Identities=18%  Similarity=0.145  Sum_probs=39.2

Q ss_pred             CCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhhhhh
Q 041250           19 GKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASKLL   69 (259)
Q Consensus        19 ~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~~~l   69 (259)
                      +++.|..+||+.+++++..+.+.++.+..-+++  +...+.|.+|+.+..+
T Consensus        29 ~~~~s~~ela~~l~is~~tv~~~l~~Le~~Gli--~r~~~~~~Lt~~g~~~   77 (139)
T 2x4h_A           29 GEGAKINRIAKDLKIAPSSVFEEVSHLEEKGLV--KKKEDGVWITNNGTRS   77 (139)
T ss_dssp             TSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSE--EEETTEEEECHHHHHH
T ss_pred             CCCcCHHHHHHHhCCChHHHHHHHHHHHHCCCE--EecCCeEEEChhHHHH
Confidence            378999999999999999999988887766654  2222779999988744

>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48

Probab=84.64  E-value=0.094  Score=36.28  Aligned_cols=61  Identities=10%  Similarity=0.016  Sum_probs=45.1

Q ss_pred             HcCcchhhhcCCCCCCHHHH----HHHcCCCccccccceeccccccCCCC--CCCCceeecCHhhhhh
Q 041250            8 QLGIPDIINKHGKPMTLNEL----VSALTINLSKTQCFFAQQKLVSSGNN--NDEEQGYVLTNASKLL   69 (259)
Q Consensus         8 ~l~lf~~L~~~~~~~t~~el----A~~~~~~~~~l~~ll~~~~~~~~~~~--~~~~~~y~~t~~~~~l   69 (259)
                      ++.++..|... ++.|..||    |+.+++++..+.++++.|...+++..  +.....|.+|+.++.+
T Consensus        10 q~~iL~~l~~~-~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~r~~~~r~~~~~LT~~G~~~   76 (99)
T 1tbx_A           10 EAIVLAYLYDN-EGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKERQERGEKRLYLTEKGKLF   76 (99)
T ss_dssp             HHHHHHHHTTC-TTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHH
T ss_pred             HHHHHHHHHHc-CCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEEEEecCCceEEEECHHHHHH
Confidence            45567777764 78999999    99999999999999888776554421  1234468899888744

>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}

Probab=84.48  E-value=0.13  Score=38.21  Aligned_cols=64  Identities=5%  Similarity=0.008  Sum_probs=44.4

Q ss_pred             HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCC--CCC---ceeecCHhhhhhh
Q 041250            7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNN--DEE---QGYVLTNASKLLL   70 (259)
Q Consensus         7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~--~~~---~~y~~t~~~~~l~   70 (259)
                      .++.++..|...++++|..+||+.+++++..+.++++.|..-+++...  ..+   -.+.+|+.++.+.
T Consensus        40 ~q~~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~  108 (150)
T 3fm5_A           40 RSYSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLR  108 (150)
T ss_dssp             HHHHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC-----------CEECHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeeCCccccchheeeECHHHHHHH
Confidence            345566777654457899999999999999999999888766654221  112   2378898887553

>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}

Probab=84.07  E-value=0.24  Score=37.35  Aligned_cols=63  Identities=8%  Similarity=-0.048  Sum_probs=46.6

Q ss_pred             HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCC--CCC---CceeecCHhhhhhh
Q 041250            7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNN--NDE---EQGYVLTNASKLLL   70 (259)
Q Consensus         7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~--~~~---~~~y~~t~~~~~l~   70 (259)
                      .++.|+..|... +++|..+||+.+++++..+.++++.|..-+++..  ...   .-.+.+|+.++.+.
T Consensus        47 ~q~~iL~~l~~~-~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~  114 (162)
T 3k0l_A           47 PQFTALSVLAAK-PNLSNAKLAERSFIKPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKL  114 (162)
T ss_dssp             HHHHHHHHHHHC-TTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCeEecCCCCcCCeeEeEECHhHHHHH
Confidence            345577778765 7899999999999999999999988776655421  112   23588999988554

>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48

Probab=83.89  E-value=0.16  Score=34.78  Aligned_cols=59  Identities=15%  Similarity=0.037  Sum_probs=41.5

Q ss_pred             cchhhhcCCCCCCHHHHHHHcCCCccc-cccceeccccccCCCCC---CCCceeecCHhhhhh
Q 041250           11 IPDIINKHGKPMTLNELVSALTINLSK-TQCFFAQQKLVSSGNNN---DEEQGYVLTNASKLL   69 (259)
Q Consensus        11 lf~~L~~~~~~~t~~elA~~~~~~~~~-l~~ll~~~~~~~~~~~~---~~~~~y~~t~~~~~l   69 (259)
                      ++..|...+++.|..|||+.+++++.. +.+.++.+...+++..+   ...-.+.+|+.++.+
T Consensus        20 ~L~~l~~~~~~~t~~eLa~~l~is~~t~vs~~l~~Le~~Glv~~~~~drR~~~~~LT~~G~~~   82 (95)
T 2pg4_A           20 TLLEFEKKGYEPSLAEIVKASGVSEKTFFMGLKDRLIRAGLVKEETLSYRVKTLKLTEKGRRL   82 (95)
T ss_dssp             HHHHHHHTTCCCCHHHHHHHHCCCHHHHHTTHHHHHHHTTSEEEEEEETTEEEEEECHHHHHH
T ss_pred             HHHHHHhcCCCCCHHHHHHHHCCCchHHHHHHHHHHHHCCCeecCCCCCCeEEEEECHhHHHH
Confidence            444555542379999999999999999 99988887665554211   122357889888744

>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}

Probab=83.89  E-value=0.18  Score=36.69  Aligned_cols=63  Identities=14%  Similarity=0.161  Sum_probs=45.5

Q ss_pred             HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCC-----CCCCceeecCHhhhhhh
Q 041250            7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNN-----NDEEQGYVLTNASKLLL   70 (259)
Q Consensus         7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~-----~~~~~~y~~t~~~~~l~   70 (259)
                      .++.++..|... ++.|..+||+.+++++..+.+.++.+...+++..     +...-.+.+|+.++.+.
T Consensus        34 ~~~~iL~~l~~~-~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~r~~~~~lT~~G~~~~  101 (139)
T 3bja_A           34 VQFGVIQVLAKS-GKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKGEETK  101 (139)
T ss_dssp             HHHHHHHHHHHS-CSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHc-CCcCHHHHHHHHCCChhHHHHHHHHHHHCCCeeeccCCCCCceeEEEECHHHHHHH
Confidence            345567777764 7899999999999999999998887766554421     11223478899887543

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=83.82  E-value=6.1  Score=33.98  Aligned_cols=95  Identities=15%  Similarity=0.048  Sum_probs=60.3

Q ss_pred             cCCCCeEEEecCCc-hHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeC----CCCC---CC--CCccEEeeh
Q 041250          112 FEGLNSLVDVGGGT-GTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGG----DMFK---AI--SPAYAVLLK  180 (259)
Q Consensus       112 ~~~~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~----d~~~---~~--~~~D~~~~~  180 (259)
                      ++...+||=+|+|. |.++..+++...--+++++|. ++-.+.+++......+-..    |+.+   ..  .++|+++-.
T Consensus       191 ~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D~vid~  270 (378)
T 3uko_A          191 VEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFEC  270 (378)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCCCEEEEC
Confidence            56667888888764 888888888764337999996 7777777763221111111    1111   01  158887754


Q ss_pred             hhhccCChHHHHHHHHHHHHhcccCCCC-cEEEEEeee
Q 041250          181 WILLDWNDEECVKILKKCKEAITRDGKK-RKVIIKDMI  217 (259)
Q Consensus       181 ~vlh~~~d~~~~~il~~~~~~L~p~~~g-g~lli~e~~  217 (259)
                      -     ..   ...++.+.+.+++   | |+++++-..
T Consensus       271 ~-----g~---~~~~~~~~~~l~~---g~G~iv~~G~~  297 (378)
T 3uko_A          271 I-----GN---VSVMRAALECCHK---GWGTSVIVGVA  297 (378)
T ss_dssp             S-----CC---HHHHHHHHHTBCT---TTCEEEECSCC
T ss_pred             C-----CC---HHHHHHHHHHhhc---cCCEEEEEccc
Confidence            2     22   2457888889998   7 998887653

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=83.78  E-value=7.7  Score=30.08  Aligned_cols=91  Identities=12%  Similarity=-0.003  Sum_probs=57.6

Q ss_pred             ecCCchHHHHHHHHHC--CCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCCC----CCCccEEeehhhhc--cCChHHH
Q 041250          121 VGGGTGTAAKAIAKAF--PKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKA----ISPAYAVLLKWILL--DWNDEEC  191 (259)
Q Consensus       121 vGgG~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~----~~~~D~~~~~~vlh--~~~d~~~  191 (259)
                      |=||+|.++..++++.  .+.++++++. +......  ...+++++.+|+.++    ..++|+++..-...  .......
T Consensus         5 VtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~--~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~~~~~~~n   82 (224)
T 3h2s_A            5 VLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADR--LGATVATLVKEPLVLTEADLDSVDAVVDALSVPWGSGRGYLH   82 (224)
T ss_dssp             EETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH--TCTTSEEEECCGGGCCHHHHTTCSEEEECCCCCTTSSCTHHH
T ss_pred             EEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccc--cCCCceEEecccccccHhhcccCCEEEECCccCCCcchhhHH
Confidence            3356677777766642  3568888887 4333322  346899999999874    23588777554331  1123445


Q ss_pred             HHHHHHHHHhcccCCCCcEEEEEe
Q 041250          192 VKILKKCKEAITRDGKKRKVIIKD  215 (259)
Q Consensus       192 ~~il~~~~~~L~p~~~gg~lli~e  215 (259)
                      ....+++.++++..  |++++++-
T Consensus        83 ~~~~~~l~~a~~~~--~~~~v~~S  104 (224)
T 3h2s_A           83 LDFATHLVSLLRNS--DTLAVFIL  104 (224)
T ss_dssp             HHHHHHHHHTCTTC--CCEEEEEC
T ss_pred             HHHHHHHHHHHHHc--CCcEEEEe
Confidence            67788888888863  57777774

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=83.18  E-value=7.6  Score=31.86  Aligned_cols=83  Identities=11%  Similarity=0.111  Sum_probs=49.2

Q ss_pred             CeEEEecCCc--hHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCCCCCCccEEeehhhhccCChHHHH
Q 041250          116 NSLVDVGGGT--GTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDEECV  192 (259)
Q Consensus       116 ~~vlDvGgG~--G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~~~~D~~~~~~vlh~~~d~~~~  192 (259)
                      .+|.=||+|.  +.++..+.+..++.+++++|. ++..+.+.+... +.....|..+....+|+|++.     .+.....
T Consensus         7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~-~~~~~~~~~~~~~~aDvVila-----vp~~~~~   80 (290)
T 3b1f_A            7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGI-VDEATADFKVFAALADVIILA-----VPIKKTI   80 (290)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTS-CSEEESCTTTTGGGCSEEEEC-----SCHHHHH
T ss_pred             ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCC-cccccCCHHHhhcCCCEEEEc-----CCHHHHH
Confidence            4688889886  334444555555678999998 565555543111 101122332223358988887     4555556


Q ss_pred             HHHHHHHHh-ccc
Q 041250          193 KILKKCKEA-ITR  204 (259)
Q Consensus       193 ~il~~~~~~-L~p  204 (259)
                      .+++++... +++
T Consensus        81 ~v~~~l~~~~l~~   93 (290)
T 3b1f_A           81 DFIKILADLDLKE   93 (290)
T ss_dssp             HHHHHHHTSCCCT
T ss_pred             HHHHHHHhcCCCC
Confidence            778888777 777

>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}

Probab=82.99  E-value=0.2  Score=37.60  Aligned_cols=62  Identities=8%  Similarity=-0.004  Sum_probs=44.7

Q ss_pred             HcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCC-----CCceeecCHhhhhhh
Q 041250            8 QLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNND-----EEQGYVLTNASKLLL   70 (259)
Q Consensus         8 ~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~-----~~~~y~~t~~~~~l~   70 (259)
                      ++.|+..|... ++.|..+||+.+++++..+.+.++.|..-+++....     ....|.+|+.++.+.
T Consensus        51 ~~~iL~~l~~~-~~~t~~ela~~l~is~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~  117 (162)
T 2fa5_A           51 EWRVITILALY-PGSSASEVSDRTAMDKVAVSRAVARLLERGFIRRETHGDDRRRSMLALSPAGRQVY  117 (162)
T ss_dssp             HHHHHHHHHHS-TTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC---------CCCEECHHHHHHH
T ss_pred             HHHHHHHHHhC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeecCCCCCCeeEEEECHHHHHHH
Confidence            45567777764 789999999999999999999888877666542211     123578898887543

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=82.91  E-value=1.6  Score=37.32  Aligned_cols=97  Identities=12%  Similarity=0.073  Sum_probs=62.3

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCe-EEEeec-hHHHhhcccCCCCeEEEeCCCCC----CCCCccEEeehhhhccCCh
Q 041250          115 LNSLVDVGGGTGTAAKAIAKAFPKLE-CTCFDL-PHVVNGLESDLVNLKYVGGDMFK----AISPAYAVLLKWILLDWND  188 (259)
Q Consensus       115 ~~~vlDvGgG~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~----~~~~~D~~~~~~vlh~~~d  188 (259)
                      ..+++|+-||.|.++..+.++  +.+ +..+|+ +.+++..+...+...  .+|+.+    ..+.+|+++...-+..++.
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~a--G~~~v~~~e~d~~a~~t~~~N~~~~~--~~Di~~~~~~~~~~~D~l~~gpPCQ~fS~   86 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESC--GAECVYSNEWDKYAQEVYEMNFGEKP--EGDITQVNEKTIPDHDILCAGFPCQAFSI   86 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHT--TCEEEEEECCCHHHHHHHHHHHSCCC--BSCGGGSCGGGSCCCSEEEEECCCTTTCT
T ss_pred             CCcEEEECCCcCHHHHHHHHC--CCeEEEEEeCCHHHHHHHHHHcCCCC--cCCHHHcCHhhCCCCCEEEECCCCCCcch
Confidence            468999999999999999887  455 566888 666666554111111  577776    2456899998866555531


Q ss_pred             --------HHHHHHHHH---HHHhcccCCCCcEEEEEeeeecC
Q 041250          189 --------EECVKILKK---CKEAITRDGKKRKVIIKDMIKEN  220 (259)
Q Consensus       189 --------~~~~~il~~---~~~~L~p~~~gg~lli~e~~~~~  220 (259)
                              +..-.++.+   +.+.++|     ++++.|.+..-
T Consensus        87 ag~~~g~~d~r~~L~~~~~r~i~~~~P-----~~~~~ENV~gl  124 (327)
T 2c7p_A           87 SGKQKGFEDSRGTLFFDIARIVREKKP-----KVVFMENVKNF  124 (327)
T ss_dssp             TSCCCGGGSTTSCHHHHHHHHHHHHCC-----SEEEEEEEGGG
T ss_pred             hcccCCCcchhhHHHHHHHHHHHhccC-----cEEEEeCcHHH
Confidence                    111123333   3334566     58899988653

>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}

Probab=82.86  E-value=0.09  Score=36.62  Aligned_cols=59  Identities=19%  Similarity=0.270  Sum_probs=40.7

Q ss_pred             HHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCC--CCCceeecCHhh
Q 041250            6 AFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNN--DEEQGYVLTNAS   66 (259)
Q Consensus         6 a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~--~~~~~y~~t~~~   66 (259)
                      -.++.|+..|... ++.|+.|||+.+|+++..+++-|+.+... ++..+  ...-.|++++..
T Consensus        27 ~~Rl~IL~~l~~~-~~~~~~ela~~l~is~stvs~hL~~L~~~-lv~~~~~gr~~~y~l~~~~   87 (99)
T 2zkz_A           27 PMRLKIVNELYKH-KALNVTQIIQILKLPQSTVSQHLCKMRGK-VLKRNRQGLEIYYSINNPK   87 (99)
T ss_dssp             HHHHHHHHHHHHH-SCEEHHHHHHHHTCCHHHHHHHHHHHBTT-TBEEEEETTEEEEECCCHH
T ss_pred             HHHHHHHHHHHHC-CCcCHHHHHHHHCcCHHHHHHHHHHHHHH-hhhheEeCcEEEEEEChHH
Confidence            4677788544332 79999999999999999999977766554 43212  222358887654

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=82.80  E-value=1.5  Score=37.39  Aligned_cols=106  Identities=8%  Similarity=0.019  Sum_probs=67.2

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCe-E-EEeec-hHHHhhcccCCCCeEEEeCCCCC-C---CC--CccEEeehhhhc
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAFPKLE-C-TCFDL-PHVVNGLESDLVNLKYVGGDMFK-A---IS--PAYAVLLKWILL  184 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~-~-~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~---~~--~~D~~~~~~vlh  184 (259)
                      ..-+++|+-||.|.+...+.++.-+.+ + ..+|+ +.+++..+...+.. ++.+|+.+ .   ++  .+|+++...-..
T Consensus         9 ~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~-~~~~DI~~~~~~~i~~~~~Dil~ggpPCQ   87 (327)
T 3qv2_A            9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE-VQVKNLDSISIKQIESLNCNTWFMSPPCQ   87 (327)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC-CBCCCTTTCCHHHHHHTCCCEEEECCCCT
T ss_pred             CCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC-cccCChhhcCHHHhccCCCCEEEecCCcc
Confidence            346899999999999999998742234 4 58998 66666655421111 56778876 2   23  489999776655


Q ss_pred             cC--C--------hHHHHHHHHHHHH-hcccCCCCcEEEEEeeeecC
Q 041250          185 DW--N--------DEECVKILKKCKE-AITRDGKKRKVIIKDMIKEN  220 (259)
Q Consensus       185 ~~--~--------d~~~~~il~~~~~-~L~p~~~gg~lli~e~~~~~  220 (259)
                      .+  +        ++..-.++.++.+ .++.....-+++++|.+..-
T Consensus        88 ~fs~S~ag~~~~~~d~r~~L~~~~~r~~i~~~~~~P~~~~lENV~gl  134 (327)
T 3qv2_A           88 PYNNSIMSKHKDINDPRAKSVLHLYRDILPYLINKPKHIFIENVPLF  134 (327)
T ss_dssp             TCSHHHHTTTCTTTCGGGHHHHHHHHTTGGGCSSCCSEEEEEECGGG
T ss_pred             CcccccCCCCCCCccccchhHHHHHHHHHHHhccCCCEEEEEchhhh
Confidence            55  1        1222356666666 55420001478999988653

>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28

Probab=82.70  E-value=0.26  Score=36.26  Aligned_cols=65  Identities=17%  Similarity=0.116  Sum_probs=46.2

Q ss_pred             HHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCC-----CCCceeecCHhhhhhh
Q 041250            6 AFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNN-----DEEQGYVLTNASKLLL   70 (259)
Q Consensus         6 a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~-----~~~~~y~~t~~~~~l~   70 (259)
                      ..++.++..|....++.|..+||+.+++++..+.+.++.|..-+++...     ...-.+.+|+.++.+.
T Consensus        35 ~~~~~iL~~l~~~~~~~~~~~la~~l~i~~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~  104 (147)
T 2hr3_A           35 FSQLVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNL  104 (147)
T ss_dssp             HHHHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeCCCCCCCCceeeEECHHHHHHH
Confidence            3456677777751279999999999999999999988887665544211     1223488999887543

>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28

Probab=82.42  E-value=0.36  Score=37.15  Aligned_cols=64  Identities=13%  Similarity=0.080  Sum_probs=44.9

Q ss_pred             HHcCcchhhhcCCCC--CCHHHHHHHcCCCccccccceeccccccCCCCCC--CC---ceeecCHhhhhhh
Q 041250            7 FQLGIPDIINKHGKP--MTLNELVSALTINLSKTQCFFAQQKLVSSGNNND--EE---QGYVLTNASKLLL   70 (259)
Q Consensus         7 ~~l~lf~~L~~~~~~--~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~--~~---~~y~~t~~~~~l~   70 (259)
                      .++.|+..|...+++  +|..+||+.+++++..+.++++.|...+++....  .+   -.+.+|+.++.+.
T Consensus        70 ~~~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~  140 (181)
T 2fbk_A           70 AGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALV  140 (181)
T ss_dssp             HHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHHHHTSEECCC-------CCBEECHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCEEecCCCCCCCeeEEEECHHHHHHH
Confidence            345567777654333  9999999999999999999998877665542221  12   2478899887543

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=82.29  E-value=8.8  Score=32.62  Aligned_cols=93  Identities=11%  Similarity=0.044  Sum_probs=59.6

Q ss_pred             cCCCCeEEEecCCc-hHHHHHHHHHCCCCeEEEeec-hHHHhhcccC-CCCeEEEeC-----CCCCC-----CCCccEEe
Q 041250          112 FEGLNSLVDVGGGT-GTAAKAIAKAFPKLECTCFDL-PHVVNGLESD-LVNLKYVGG-----DMFKA-----ISPAYAVL  178 (259)
Q Consensus       112 ~~~~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~ri~~~~~-----d~~~~-----~~~~D~~~  178 (259)
                      +....+||-+|+|. |.++..+++...--++++.|. ++-.+.+++. .+.+ +-..     ++.+.     ..++|+++
T Consensus       169 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~v-i~~~~~~~~~~~~~i~~~~~~g~D~vi  247 (356)
T 1pl8_A          169 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLV-LQISKESPQEIARKVEGQLGCKPEVTI  247 (356)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEE-EECSSCCHHHHHHHHHHHHTSCCSEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEE-EcCcccccchHHHHHHHHhCCCCCEEE
Confidence            56678899999876 889999999874338999996 6666777653 2322 1111     11111     02488876


Q ss_pred             ehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          179 LKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       179 ~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      -.-     ...   ..++...+.|+|   +|+++++-.
T Consensus       248 d~~-----g~~---~~~~~~~~~l~~---~G~iv~~G~  274 (356)
T 1pl8_A          248 ECT-----GAE---ASIQAGIYATRS---GGTLVLVGL  274 (356)
T ss_dssp             ECS-----CCH---HHHHHHHHHSCT---TCEEEECSC
T ss_pred             ECC-----CCh---HHHHHHHHHhcC---CCEEEEEec
Confidence            442     221   356778889999   999988754

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=82.23  E-value=7.8  Score=33.24  Aligned_cols=96  Identities=13%  Similarity=0.098  Sum_probs=60.5

Q ss_pred             cCCCCeEEEecCCc-hHHHHHHHHHCCCCeEEEeec-hHHHhhccc-CCCCeE-EEeCCCCC---C---C-C-CccEEee
Q 041250          112 FEGLNSLVDVGGGT-GTAAKAIAKAFPKLECTCFDL-PHVVNGLES-DLVNLK-YVGGDMFK---A---I-S-PAYAVLL  179 (259)
Q Consensus       112 ~~~~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri~-~~~~d~~~---~---~-~-~~D~~~~  179 (259)
                      +....+||=+|+|. |.++..+++....-++++.|. ++-.+.+++ ..+.+- ....|+.+   .   . + ++|+++-
T Consensus       180 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg~Dvvid  259 (370)
T 4ej6_A          180 IKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVDVVIE  259 (370)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTTCEEEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCCCCCEEEE
Confidence            55667888888876 888899998874438999987 666666665 222211 01112211   1   1 1 5888775


Q ss_pred             hhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 041250          180 KWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIK  218 (259)
Q Consensus       180 ~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~  218 (259)
                      .-     ...   ..++.+.+.|++   +|+++++-...
T Consensus       260 ~~-----G~~---~~~~~~~~~l~~---~G~vv~~G~~~  287 (370)
T 4ej6_A          260 CA-----GVA---ETVKQSTRLAKA---GGTVVILGVLP  287 (370)
T ss_dssp             CS-----CCH---HHHHHHHHHEEE---EEEEEECSCCC
T ss_pred             CC-----CCH---HHHHHHHHHhcc---CCEEEEEeccC
Confidence            42     211   357888889999   99998876543

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=82.21  E-value=6.2  Score=30.46  Aligned_cols=95  Identities=15%  Similarity=0.156  Sum_probs=56.3

Q ss_pred             eEEEecCCchHHHHHHHHHC--CCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCCC----CCCccEEeehhhhccCChH
Q 041250          117 SLVDVGGGTGTAAKAIAKAF--PKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKA----ISPAYAVLLKWILLDWNDE  189 (259)
Q Consensus       117 ~vlDvGgG~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~----~~~~D~~~~~~vlh~~~d~  189 (259)
                      +||=. ||+|.++..++++.  .+.++++++. ++......   .+++++.+|+.++    +.++|+++..-.......+
T Consensus         2 kvlVt-GatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~---~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~~~~   77 (221)
T 3ew7_A            2 KIGII-GATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH---KDINILQKDIFDLTLSDLSDQNVVVDAYGISPDEAE   77 (221)
T ss_dssp             EEEEE-TTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC---SSSEEEECCGGGCCHHHHTTCSEEEECCCSSTTTTT
T ss_pred             eEEEE-cCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc---CCCeEEeccccChhhhhhcCCCEEEECCcCCccccc
Confidence            34433 55666666665542  2468888887 33332221   6899999999874    2358887765433222223


Q ss_pred             HHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          190 ECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       190 ~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      ......+++.++++.. +.++++++-.
T Consensus        78 ~~~~~~~~l~~a~~~~-~~~~~v~~SS  103 (221)
T 3ew7_A           78 KHVTSLDHLISVLNGT-VSPRLLVVGG  103 (221)
T ss_dssp             SHHHHHHHHHHHHCSC-CSSEEEEECC
T ss_pred             hHHHHHHHHHHHHHhc-CCceEEEEec
Confidence            3456677777777752 1467776654

>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}

Probab=82.12  E-value=0.2  Score=36.96  Aligned_cols=63  Identities=6%  Similarity=-0.050  Sum_probs=46.1

Q ss_pred             HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCC--CC---CceeecCHhhhhhh
Q 041250            7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNN--DE---EQGYVLTNASKLLL   70 (259)
Q Consensus         7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~--~~---~~~y~~t~~~~~l~   70 (259)
                      .++.++..|... ++.|..+||+.+++++..+.++++.+..-+++...  ..   .-.+.+|+.++.+.
T Consensus        32 ~q~~iL~~l~~~-~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~   99 (145)
T 3g3z_A           32 NLFAVLYTLATE-GSRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYA   99 (145)
T ss_dssp             HHHHHHHHHHHH-CSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHH
T ss_pred             HHHHHHHHHHHC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHHHH
Confidence            345567777654 68999999999999999999998887766554211  12   23589999988553

>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}

Probab=82.07  E-value=0.06  Score=38.69  Aligned_cols=44  Identities=14%  Similarity=0.159  Sum_probs=36.9

Q ss_pred             HHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCC
Q 041250            6 AFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSG   51 (259)
Q Consensus         6 a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~   51 (259)
                      -.++.|+..|.+  ++.|+.+||+.+|+++..+++.+..|...+++
T Consensus        32 ~~~~~il~~L~~--~~~s~~ela~~l~is~stvsr~l~~Le~~Glv   75 (119)
T 2lkp_A           32 PSRLMILTQLRN--GPLPVTDLAEAIGMEQSAVSHQLRVLRNLGLV   75 (119)
T ss_dssp             HHHHHHHHHHHH--CCCCHHHHHHHHSSCHHHHHHHHHHHHHHCSE
T ss_pred             HHHHHHHHHHHH--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCE
Confidence            356788889986  68999999999999999999988887665543

>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}

Probab=82.04  E-value=0.26  Score=36.72  Aligned_cols=63  Identities=11%  Similarity=0.061  Sum_probs=45.6

Q ss_pred             HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCC-----CCceeecCHhhhhhh
Q 041250            7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNND-----EEQGYVLTNASKLLL   70 (259)
Q Consensus         7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~-----~~~~y~~t~~~~~l~   70 (259)
                      .++.++..|... ++.|..+||+.+++++..+.++++.|...+++....     ..-.+.+|+.++.+.
T Consensus        44 ~~~~iL~~l~~~-~~~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~  111 (155)
T 3cdh_A           44 PEWRVLACLVDN-DAMMITRLAKLSLMEQSRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGRALA  111 (155)
T ss_dssp             HHHHHHHHHSSC-SCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC------CCCEEECHHHHHHH
T ss_pred             HHHHHHHHHHHC-CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCcCCeeEeEECHHHHHHH
Confidence            345567777764 789999999999999999999988877665542111     123488999887543

>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69

Probab=81.89  E-value=0.19  Score=35.37  Aligned_cols=58  Identities=17%  Similarity=-0.007  Sum_probs=42.4

Q ss_pred             CcchhhhcCCCCCCHHHHHHHc-CCCccccccceeccccccCCCCC-----CCCceeecCHhhhhh
Q 041250           10 GIPDIINKHGKPMTLNELVSAL-TINLSKTQCFFAQQKLVSSGNNN-----DEEQGYVLTNASKLL   69 (259)
Q Consensus        10 ~lf~~L~~~~~~~t~~elA~~~-~~~~~~l~~ll~~~~~~~~~~~~-----~~~~~y~~t~~~~~l   69 (259)
                      .|+..|..  ++.+..||++.+ |+++..+.+.|+.|...+++...     ...-.|.+|+.++.+
T Consensus        29 ~IL~~L~~--~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l   92 (107)
T 2fsw_A           29 LIIFQINR--RIIRYGELKRAIPGISEKMLIDELKFLCGKGLIKKKQYPEVPPRVEYSLTPLGEKV   92 (107)
T ss_dssp             HHHHHHTT--SCEEHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHTT
T ss_pred             HHHHHHHh--CCcCHHHHHHHcccCCHHHHHHHHHHHHHCCCEEEeecCCCCCeeEEEECccHHHH
Confidence            35566664  799999999999 59999999988887766654211     112359999988644

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=81.71  E-value=2.3  Score=36.22  Aligned_cols=89  Identities=17%  Similarity=0.085  Sum_probs=59.8

Q ss_pred             cCCCCeEEEecCCc-hHHHHHHHHHCCCCeEEEeec-hHHHhhcccC-CCCeEEEeCCCCCCCC-CccEEeehhhhccCC
Q 041250          112 FEGLNSLVDVGGGT-GTAAKAIAKAFPKLECTCFDL-PHVVNGLESD-LVNLKYVGGDMFKAIS-PAYAVLLKWILLDWN  187 (259)
Q Consensus       112 ~~~~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~ri~~~~~d~~~~~~-~~D~~~~~~vlh~~~  187 (259)
                      .....+||-+|+|. |.++..+++.. +.++++.|. ++-.+.+++. .+.+-   .|. +... ++|+++-.-     .
T Consensus       174 ~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~v~---~~~-~~~~~~~D~vid~~-----g  243 (348)
T 3two_A          174 VTKGTKVGVAGFGGLGSMAVKYAVAM-GAEVSVFARNEHKKQDALSMGVKHFY---TDP-KQCKEELDFIISTI-----P  243 (348)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHT-TCEEEEECSSSTTHHHHHHTTCSEEE---SSG-GGCCSCEEEEEECC-----C
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHhcCCCeec---CCH-HHHhcCCCEEEECC-----C
Confidence            66678888899876 88899999887 469999986 6666666653 33322   221 1122 688877432     1


Q ss_pred             hHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          188 DEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       188 d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      .+   ..++.+.+.|+|   +|+++++-.
T Consensus       244 ~~---~~~~~~~~~l~~---~G~iv~~G~  266 (348)
T 3two_A          244 TH---YDLKDYLKLLTY---NGDLALVGL  266 (348)
T ss_dssp             SC---CCHHHHHTTEEE---EEEEEECCC
T ss_pred             cH---HHHHHHHHHHhc---CCEEEEECC
Confidence            11   246778889999   999988754

>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28

Probab=81.37  E-value=0.16  Score=37.19  Aligned_cols=62  Identities=16%  Similarity=0.222  Sum_probs=45.0

Q ss_pred             HcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCC-----CCCceeecCHhhhhhh
Q 041250            8 QLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNN-----DEEQGYVLTNASKLLL   70 (259)
Q Consensus         8 ~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~-----~~~~~y~~t~~~~~l~   70 (259)
                      ++.|+..|... ++.|..+||+.+++++..+.+.++.|..-+++...     ...-.+.+|+.++.+.
T Consensus        39 ~~~iL~~l~~~-~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~  105 (142)
T 2bv6_A           39 QFLVLTILWDE-SPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIR  105 (142)
T ss_dssp             HHHHHHHHHHS-SEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHc-CCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCCCcceEEEEEChHHHHHH
Confidence            45567777764 68999999999999999999988887665544211     1222578899887543

>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}

Probab=81.14  E-value=0.16  Score=33.93  Aligned_cols=44  Identities=16%  Similarity=0.202  Sum_probs=35.6

Q ss_pred             HcCcchhhhcCC-CCCCHHHHHHHc-----CCCccccccceeccccccCC
Q 041250            8 QLGIPDIINKHG-KPMTLNELVSAL-----TINLSKTQCFFAQQKLVSSG   51 (259)
Q Consensus         8 ~l~lf~~L~~~~-~~~t~~elA~~~-----~~~~~~l~~ll~~~~~~~~~   51 (259)
                      +..|++.|.+.+ ++.|++||++.+     +++...+.|.|..+...+++
T Consensus        19 r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv   68 (83)
T 2fu4_A           19 RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV   68 (83)
T ss_dssp             HHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred             HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence            455788887644 689999999999     99999999988887666544

>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A

Probab=80.73  E-value=0.16  Score=37.28  Aligned_cols=63  Identities=8%  Similarity=0.044  Sum_probs=45.2

Q ss_pred             HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCC-----CCCceeecCHhhhhhh
Q 041250            7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNN-----DEEQGYVLTNASKLLL   70 (259)
Q Consensus         7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~-----~~~~~y~~t~~~~~l~   70 (259)
                      .++.++..|... ++.|..|||+.+++++..+.++++.+..-+++...     ...-.+.+|+.++.+.
T Consensus        37 ~q~~vL~~l~~~-~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~  104 (140)
T 3hsr_A           37 TGYIVLMAIEND-EKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIK  104 (140)
T ss_dssp             HHHHHHHHSCTT-CEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHTH
T ss_pred             HHHHHHHHHHHc-CCcCHHHHHHHHCCChhhHHHHHHHHHHCCCeEecCCCCCcceeeeeEChHHHHHH
Confidence            345566677654 79999999999999999999998887765544211     1223588999987543

>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}

Probab=80.69  E-value=0.26  Score=35.94  Aligned_cols=63  Identities=14%  Similarity=0.038  Sum_probs=46.4

Q ss_pred             HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCC-----CCCceeecCHhhhhhh
Q 041250            7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNN-----DEEQGYVLTNASKLLL   70 (259)
Q Consensus         7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~-----~~~~~y~~t~~~~~l~   70 (259)
                      .++.++..|... ++.|..+||+.+++++..+.+.++.+..-+++...     ...-.|.+|+.++.+.
T Consensus        32 ~~~~iL~~l~~~-~~~~~~ela~~l~is~~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~~~   99 (142)
T 3bdd_A           32 TRYSILQTLLKD-APLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREAL   99 (142)
T ss_dssp             HHHHHHHHHHHH-CSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence            345577777764 68999999999999999999988877665543211     2233589999998665

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=80.67  E-value=2  Score=36.55  Aligned_cols=94  Identities=14%  Similarity=0.119  Sum_probs=62.2

Q ss_pred             cCCCCeEEEecCCc-hHHHHHHHHHCCCCeEEEeec-hHHHhhcccC-CCCeEEEeCCCCCC---C--C-CccEEeehhh
Q 041250          112 FEGLNSLVDVGGGT-GTAAKAIAKAFPKLECTCFDL-PHVVNGLESD-LVNLKYVGGDMFKA---I--S-PAYAVLLKWI  182 (259)
Q Consensus       112 ~~~~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~ri~~~~~d~~~~---~--~-~~D~~~~~~v  182 (259)
                      .....+||-+|+|. |.++..+++.....+++++|. ++-.+.+++. .+.+--...|+.+.   .  . ++|+++-.  
T Consensus       169 ~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~v~~~t~g~g~d~v~d~--  246 (345)
T 3jv7_A          169 LGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKSGAGAADAIRELTGGQGATAVFDF--  246 (345)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCSEEEECSTTHHHHHHHHHGGGCEEEEEES--
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcCCCcHHHHHHHHhCCCCCeEEEEC--
Confidence            56677888888766 899999999876789999997 6777777763 23221111122111   1  1 47877653  


Q ss_pred             hccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          183 LLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       183 lh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                         ...+   ..++.+.+.|++   +|+++++-.
T Consensus       247 ---~G~~---~~~~~~~~~l~~---~G~iv~~G~  271 (345)
T 3jv7_A          247 ---VGAQ---STIDTAQQVVAV---DGHISVVGI  271 (345)
T ss_dssp             ---SCCH---HHHHHHHHHEEE---EEEEEECSC
T ss_pred             ---CCCH---HHHHHHHHHHhc---CCEEEEECC
Confidence               2222   367888899999   999988764

>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}

Probab=80.59  E-value=0.23  Score=37.16  Aligned_cols=64  Identities=9%  Similarity=0.053  Sum_probs=45.0

Q ss_pred             HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCC--C---CCceeecCHhhhhhh
Q 041250            7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNN--D---EEQGYVLTNASKLLL   70 (259)
Q Consensus         7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~--~---~~~~y~~t~~~~~l~   70 (259)
                      .++.|+..|...+++.|..+||+.+++++..+.++++.|..-+++...  .   ..-.+.+|+.++.+.
T Consensus        48 ~~~~iL~~L~~~~~~~~~~ela~~l~i~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~  116 (160)
T 3boq_A           48 AKFDAMAQLARNPDGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDAGLTTF  116 (160)
T ss_dssp             HHHHHHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC--------CEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCCCCCeEEEEEChhHHHHH
Confidence            355677788322378999999999999999999998887666554211  1   122478999887543

>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A

Probab=80.51  E-value=0.33  Score=35.61  Aligned_cols=62  Identities=8%  Similarity=-0.017  Sum_probs=44.8

Q ss_pred             HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCC-----CCCceeecCHhhhhhh
Q 041250            7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNN-----DEEQGYVLTNASKLLL   70 (259)
Q Consensus         7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~-----~~~~~y~~t~~~~~l~   70 (259)
                      .++.++..|. . ++.|..+||+.+++++..+.+.++.+..-+++...     ...-.+.+|+.++.+.
T Consensus        38 ~~~~iL~~l~-~-~~~~~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~~G~~~~  104 (146)
T 2gxg_A           38 LDFLVLRATS-D-GPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETF  104 (146)
T ss_dssp             HHHHHHHHHT-T-SCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred             HHHHHHHHHh-c-CCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEeecCCCCCceEEEEECHHHHHHH
Confidence            3455677777 3 79999999999999999999988887665544211     1223478899887543

>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}

Probab=80.48  E-value=0.17  Score=36.77  Aligned_cols=45  Identities=11%  Similarity=0.060  Sum_probs=36.1

Q ss_pred             HHcCcchhhhcCCCC-CCHHHHHHHcCCCccccccceeccccccCC
Q 041250            7 FQLGIPDIINKHGKP-MTLNELVSALTINLSKTQCFFAQQKLVSSG   51 (259)
Q Consensus         7 ~~l~lf~~L~~~~~~-~t~~elA~~~~~~~~~l~~ll~~~~~~~~~   51 (259)
                      .+..|+..|...++| .|+.|||+.++++...+.|.+..|...+++
T Consensus        27 ~e~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV   72 (123)
T 3r0a_A           27 ADLNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEKEIL   72 (123)
T ss_dssp             HHHHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSE
T ss_pred             HHHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCE
Confidence            355677888765456 999999999999999999988887766554

>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}

Probab=80.26  E-value=0.17  Score=37.20  Aligned_cols=63  Identities=10%  Similarity=-0.021  Sum_probs=46.1

Q ss_pred             HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCC-----CCCCceeecCHhhhhhh
Q 041250            7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNN-----NDEEQGYVLTNASKLLL   70 (259)
Q Consensus         7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~-----~~~~~~y~~t~~~~~l~   70 (259)
                      .++.++..|... ++.|..|||+.+++++..+.++++.+..-+++..     +...-.+.+|+.++.+.
T Consensus        38 ~~~~iL~~l~~~-~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~  105 (143)
T 3oop_A           38 EQWSVLEGIEAN-EPISQKEIALWTKKDTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKET  105 (143)
T ss_dssp             HHHHHHHHHHHH-SSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHc-CCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHHHH
Confidence            355567777754 7999999999999999999999888776655421     11223588999987553

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=80.04  E-value=7.7  Score=33.19  Aligned_cols=95  Identities=18%  Similarity=0.102  Sum_probs=60.6

Q ss_pred             cCCCCeEEEecCCc-hHHHHHHHHHCCCCeEEEeec-hHHHhhccc-CCCCeEE-EeCCCCCC----CC-CccEEeehhh
Q 041250          112 FEGLNSLVDVGGGT-GTAAKAIAKAFPKLECTCFDL-PHVVNGLES-DLVNLKY-VGGDMFKA----IS-PAYAVLLKWI  182 (259)
Q Consensus       112 ~~~~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri~~-~~~d~~~~----~~-~~D~~~~~~v  182 (259)
                      +....+||-+|+|. |.++..+++....-+++++|. ++-.+.+++ ..+.+-- ...|+.+.    .+ ++|+++-.- 
T Consensus       188 ~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~vid~~-  266 (371)
T 1f8f_A          188 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALEST-  266 (371)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECS-
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCcEEEECC-
Confidence            56678999999887 889999998763336899986 666777765 2222210 01122111    11 488876442 


Q ss_pred             hccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250          183 LLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI  217 (259)
Q Consensus       183 lh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~  217 (259)
                          ..   ...++.+.+.|++   +|+++++-..
T Consensus       267 ----g~---~~~~~~~~~~l~~---~G~iv~~G~~  291 (371)
T 1f8f_A          267 ----GS---PEILKQGVDALGI---LGKIAVVGAP  291 (371)
T ss_dssp             ----CC---HHHHHHHHHTEEE---EEEEEECCCC
T ss_pred             ----CC---HHHHHHHHHHHhc---CCEEEEeCCC
Confidence                11   1457888899999   8998887653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	259
d1fp1d2	244	c.66.1.12 (D:129-372) Chalcone O-methyltransferase	1e-50
d1fp2a2	244	c.66.1.12 (A:109-352) Isoflavone O-methyltransfera	2e-49
d1kyza2	243	c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferuli	9e-36
d1qzza2	256	c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase	3e-25
d1tw3a2	253	c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransf	4e-20
d1fp1d1	110	a.4.5.29 (D:19-128) Chalcone O-methyltransferase {	1e-15
d1fp2a1	101	a.4.5.29 (A:8-108) Isoflavone O-methyltransferase	2e-15
d1kyza1	107	a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic	1e-14
d1qzza1	92	a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase R	4e-09
d1tw3a1	85	a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransfer	1e-08

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score =  163 bits (414), Expect = 1e-50
 Identities = 56/186 (30%), Positives = 96/186 (51%), Gaps = 5/186 (2%)

Query: 74  PLSEYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIA 133
              E+ G + K+N  FN++M          M+ +    FEG+++LVDVGGG+G   + I 
Sbjct: 42  TKYEFMGKDKKMNQIFNKSMVDVCATEMKRML-EIYTGFEGISTLVDVGGGSGRNLELII 100

Query: 134 KAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDEECVK 193
             +P ++   FDLP V+      L  +++VGGDMF ++    A++LK +  +W+DE+C++
Sbjct: 101 SKYPLIKGINFDLPQVIENAP-PLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIE 159

Query: 194 ILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWA 253
            L  C +A+       KVII + I        +  +     +  M + + G ER EK++ 
Sbjct: 160 FLSNCHKAL---SPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYE 216

Query: 254 KIFADS 259
           K+   S
Sbjct: 217 KLSKLS 222

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score =  161 bits (407), Expect = 2e-49
 Identities = 88/183 (48%), Positives = 125/183 (68%), Gaps = 3/183 (1%)

Query: 77  EYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAF 136
           ++     + N  FN+AMASD++L  ++ ++ C  VF+GL S+VDVGGGTGT AK I + F
Sbjct: 44  DFLDKNPEYNTSFNDAMASDSKL-INLALRDCDFVFDGLESIVDVGGGTGTTAKIICETF 102

Query: 137 PKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDEECVKILK 196
           PKL+C  FD P VV  L     NL YVGGDMF +I  A AVLLK+IL +W D++C++ILK
Sbjct: 103 PKLKCIVFDRPQVVENLSGS-NNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILK 161

Query: 197 KCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAKIF 256
           KCKEA+T DGK+ KV I DM+ + +K + +  + +L  ++ M   L G ER+E+EW K+F
Sbjct: 162 KCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMAC-LNGKERNEEEWKKLF 220

Query: 257 ADS 259
            ++
Sbjct: 221 IEA 223

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 243

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score =  125 bits (315), Expect = 9e-36
 Identities = 64/187 (34%), Positives = 97/187 (51%), Gaps = 6/187 (3%)

Query: 74  PLSEYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIA 133
              EY G + + N  FN+ M+  + +    ++ +    FEGL SLVDVGGGTG     I 
Sbjct: 42  TAFEYHGTDPRFNKVFNKGMSDHSTITMKKIL-ETYTGFEGLKSLVDVGGGTGAVINTIV 100

Query: 134 KAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDEECVK 193
             +P ++   FDLPHV+    S    +++VGGDMF +I  A AV +KWI  DW+DE C+K
Sbjct: 101 SKYPTIKGINFDLPHVIEDAPSYP-GVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLK 159

Query: 194 ILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLT-GTERDEKEW 252
            LK C EA+       KVI+ + I         + +  +  ++ M+     G ER +KE+
Sbjct: 160 FLKNCYEAL---PDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEF 216

Query: 253 AKIFADS 259
             +   +
Sbjct: 217 EDLAKGA 223

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 256

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

 Score = 98.1 bits (243), Expect = 3e-25
 Identities = 39/193 (20%), Positives = 67/193 (34%), Gaps = 14/193 (7%)

Query: 74  PLSEYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIA 133
           P  E    +  L + F+  M+ D  LA           +  +  ++DVGGG G    AIA
Sbjct: 43  PFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD--WSAVRHVLDVGGGNGGMLAAIA 100

Query: 134 KAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAY-------AVLLKWILLDW 186
              P L  T  +L            +                        VLL ++LL+W
Sbjct: 101 LRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLNW 160

Query: 187 NDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTE 246
           +DE+ + IL+ C  A+       ++++ D        D          ++ M+  + G  
Sbjct: 161 SDEDALTILRGCVRALE---PGGRLLVLDRADVE--GDGADRFFSTLLDLRMLTFMGGRV 215

Query: 247 RDEKEWAKIFADS 259
           R   E   +   +
Sbjct: 216 RTRDEVVDLAGSA 228

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 253

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

 Score = 84.3 bits (207), Expect = 4e-20
 Identities = 44/193 (22%), Positives = 79/193 (40%), Gaps = 15/193 (7%)

Query: 74  PLSEYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIA 133
           P  E       L   F+  +A D  +A           +  +  ++DVGGG G  A AIA
Sbjct: 42  PFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD--WTNVRHVLDVGGGKGGFAAAIA 99

Query: 134 KAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAIS-------PAYAVLLKWILLDW 186
           +  P +  T  ++   V+   S L +                     A A++L ++LL+W
Sbjct: 100 RRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNW 159

Query: 187 NDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTE 246
            D + V+IL +C EA+       +++I +    +   +    E     ++ M+V L G  
Sbjct: 160 PDHDAVRILTRCAEALE---PGGRILIHERDDLH---ENSFNEQFTELDLRMLVFLGGAL 213

Query: 247 RDEKEWAKIFADS 259
           R  ++W  + A +
Sbjct: 214 RTREKWDGLAASA 226

>d1fp1d1 a.4.5.29 (D:19-128) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 110

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score = 68.7 bits (168), Expect = 1e-15
 Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 16/89 (17%)

Query: 1   MTLKCAFQLGIPDIINKHGKP---MTLNELVSAL---TINLSKTQC------FFAQQKLV 48
             L  A  L + +II K   P   M+ +E+ S L   T +              A   ++
Sbjct: 21  AVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVL 80

Query: 49  S----SGNNNDEEQGYVLTNASKLLLKDN 73
           +    +  +   E+ Y L+   K L+ D 
Sbjct: 81  TSTTRTIEDGGAERVYGLSMVGKYLVPDE 109

>d1fp2a1 a.4.5.29 (A:8-108) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 101

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score = 68.0 bits (166), Expect = 2e-15
 Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 4/77 (5%)

Query: 1   MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGN----NNDE 56
           M+LK A ++ IP+II  HGKP++L+ LVS L +  SK        + ++          E
Sbjct: 24  MSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLMRYLAHNGFFEIITKE 83

Query: 57  EQGYVLTNASKLLLKDN 73
           E+ Y LT AS+LL++ +
Sbjct: 84  EESYALTVASELLVRGS 100

>d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 107

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score = 65.6 bits (160), Expect = 1e-14
 Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 13/85 (15%)

Query: 1   MTLKCAFQLGIPDIINKHGK--PMTLNELVSALTINLSKTQCFFAQ--QKLVSSG----- 51
           M LK A +L + +II K G    ++  E+ S L            +  + L         
Sbjct: 22  MILKSALELDLLEIIAKAGPGAQISPIEIASQLPTTNPDAPVMLDRMLRLLACYIILTCS 81

Query: 52  ----NNNDEEQGYVLTNASKLLLKD 72
                +   ++ Y L   +K L+K+
Sbjct: 82  VRTQQDGKVQRLYGLATVAKYLVKN 106

>d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 92

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

 Score = 50.5 bits (121), Expect = 4e-09
 Identities = 13/72 (18%), Positives = 19/72 (26%), Gaps = 7/72 (9%)

Query: 1  MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSG---NNNDEE 57
          M L+ A  L + D +       TL  L      +            L   G       + 
Sbjct: 22 MALRVAATLRLVDHL--LAGADTLAGLADRTDTHPQALSRLVRH--LTVVGVLEGGEKQG 77

Query: 58 QGYVLTNASKLL 69
          +    T    LL
Sbjct: 78 RPLRPTRLGMLL 89

>d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 85

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

 Score = 49.0 bits (117), Expect = 1e-08
 Identities = 16/73 (21%), Positives = 24/73 (32%), Gaps = 5/73 (6%)

Query: 1  MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGN-NNDEEQG 59
          M ++ A  L + D I       T+  L +                 LV+ G    D    
Sbjct: 16 MVVRTAATLRLVDHI--LAGARTVKALAARTDTRPEALLRLIRH--LVAIGLLEEDAPGE 71

Query: 60 YVLTNASKLLLKD 72
          +V T   +LL  D
Sbjct: 72 FVPTEVGELLADD 84

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	259
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	100.0
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	100.0
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	100.0
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	100.0
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	100.0
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.78
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.78
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.77
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.75
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.75
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.75
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.73
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.66
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.63
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.63
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.62
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.62
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.6
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.59
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.57
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.55
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.55
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.52
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.51
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.51
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.48
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.47
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.46
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.43
d1tw3a1	85	Carminomycin 4-O-methyltransferase {Streptomyces p	99.42
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.38
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.37
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.35
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.34
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.33
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.33
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.32
d1fp2a1	101	Isoflavone O-methyltransferase {Alfalfa (Medicago	99.31
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.3
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.3
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.27
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.26
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.24
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.23
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.2
d1qzza1	92	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.19
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.18
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.18
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.15
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.12
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.1
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.07
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.07
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	99.06
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.06
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.04
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	98.99
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	98.99
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	98.88
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	98.86
d1fp1d1	110	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.78
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	98.77
d1kyza1	107	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.77
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	98.72
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	98.71
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	98.56
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	98.52
d2h00a1	250	Methyltransferase 10 domain containing protein MET	98.51
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	98.51
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	98.49
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.45
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	98.42
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	98.4
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.36
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	98.35
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.34
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.33
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	98.28
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	98.27
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.27
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.25
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.22
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.2
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.17
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	98.16
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.13
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.09
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.07
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	98.07
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.06
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.02
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	97.7
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	97.54
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	97.48
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	97.44
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	97.43
d2uyoa1	297	Putative methyltransferase ML2640 {Mycobacterium l	97.32
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	97.25
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	97.21
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	97.13
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	97.05
d1mkma1	75	Transcriptional regulator IclR, N-terminal domain	96.91
d1rjda_	328	Leucine carboxy methyltransferase Ppm1 {Baker's ye	96.85
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	95.97
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	95.92
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	95.89
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	95.89
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	95.64
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	95.5
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	95.25
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	94.95
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	94.88
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	94.37
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	94.22
d1j5ya1	65	Putative transcriptional regulator TM1602, N-termi	94.19
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	93.38
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	93.17
d1biaa1	63	Biotin repressor, N-terminal domain {Escherichia c	92.99
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	92.51
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	92.23
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	92.16
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	91.98
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	91.6
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	91.52
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	91.03
d1ub9a_	100	Hypothetical protein PH1061 {Archaeon Pyrococcus h	90.91
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	90.63
d1r1ua_	94	Metal-sensing transcriptional repressor CzrA {Stap	89.96
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	89.88
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	89.88
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	89.85
d1xd7a_	127	Hypothetical protein ywnA {Bacillus subtilis [TaxI	89.77
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	89.73
d1r1ta_	98	SmtB repressor {Cyanobacteria (Synechococcus), pcc	89.58
d1z05a1	71	Transcriptional regulator VC2007 N-terminal domain	89.43
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	88.48
d2hoea1	62	N-acetylglucosamine kinase {Thermotoga maritima [T	87.9
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	87.77
d1ylfa1	138	Hypothetical protein BC1842 {Bacillus cereus [TaxI	87.34
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	87.04
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	86.96
d1u2wa1	108	Cadmium efflux system accessory protein CadC {Stap	86.85
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	86.31
d1i1ga1	60	LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}	86.25
d2hr3a1	145	Probable transcriptional regulator PA3067 {Pseudom	86.01
d1z6ra1	70	Mlc protein N-terminal domain {Escherichia coli [T	85.67
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	85.61
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	85.45
d1ulya_	190	Hypothetical protein PH1932 {Pyrococcus horikoshii	85.23
d1s6la1	60	Alkylmercury lyase MerB {Escherichia coli [TaxId:	85.2
d2cyya1	60	Putative transcriptional regulator PH1519 {Archaeo	85.18
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	85.17
d1r7ja_	90	Sso10a (SSO10449) {Archaeon Sulfolobus solfataricu	84.4
d2cfxa1	63	Transcriptional regulator LrpC {Bacillus subtilis	83.77
d3ctaa1	85	Ta1064 (RFK), N-terminal domain {Thermoplasma acid	83.17
d2d1ha1	109	Hypothetical transcriptional regulator ST1889 {Sul	82.66
d2cg4a1	63	Regulatory protein AsnC {Escherichia coli [TaxId:	82.15
d2p4wa1	194	Transcriptional regulatory protein PF1790 {Pyrococ	82.14
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	81.17
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	80.87
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	80.27
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	80.03

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=100.00  E-value=3.2e-39  Score=268.93  Aligned_cols=181  Identities=31%  Similarity=0.584  Sum_probs=164.0

Q ss_pred             CCCchhhcCchHHHHHHHHHHhcchhhhHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhc
Q 041250           74 PLSEYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGL  153 (259)
Q Consensus        74 ~~~~~l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a  153 (259)
                      ++++|+.++|+..+.|+++|...+....+.+++.++ .+++..+|||||||+|.++.++++++|++++|++|+|++++.+
T Consensus        42 ~~~e~l~~~p~~~~~F~~aM~~~s~~~~~~l~~~~~-~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~  120 (244)
T d1fp1d2          42 TKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYT-GFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENA  120 (244)
T ss_dssp             ----CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCC-TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTC
T ss_pred             CHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhcc-cccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchhhhhcc
Confidence            456999999999999999999998888899999998 3688899999999999999999999999999999999999887


Q ss_pred             ccCCCCeEEEeCCCCCCCCCccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhh
Q 041250          154 ESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLF  233 (259)
Q Consensus       154 ~~~~~ri~~~~~d~~~~~~~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~  233 (259)
                      . ..+||+++.+|+++++|++|+|+++++||+|+|+++++||++++++|+|   ||+|+|+|.++++++..+........
T Consensus       121 ~-~~~ri~~~~gd~~~~~p~~D~~~l~~vLh~~~de~~~~iL~~~~~aL~p---gg~llI~e~v~~~~~~~~~~~~~~~~  196 (244)
T d1fp1d2         121 P-PLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSP---NGKVIIVEFILPEEPNTSEESKLVST  196 (244)
T ss_dssp             C-CCTTEEEEECCTTTCCCCEEEEEEESSGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEEECSSCCSSHHHHHHHH
T ss_pred             C-CCCCeEEecCCcccccccceEEEEehhhhhCCHHHHHHHHHHHHHHcCC---CcEEEEEEEEecCCCCCchHHHHHHH
Confidence            7 7899999999999999999999999999999999999999999999999   99999999999988766533334568


Q ss_pred             hhhhhhhccCccccCHHHHHHHHhcC
Q 041250          234 FEMFMMVLLTGTERDEKEWAKIFADS  259 (259)
Q Consensus       234 ~d~~m~~~~~g~~rt~~e~~~ll~~a  259 (259)
                      +|++||+.++|++||.+||++||++|
T Consensus       197 ~d~~m~~~~~g~ert~~e~~~ll~~A  222 (244)
T d1fp1d2         197 LDNLMFITVGGRERTEKQYEKLSKLS  222 (244)
T ss_dssp             HHHHHHHHHSCCCEEHHHHHHHHHHT
T ss_pred             HHHHHHhhCCCcCCCHHHHHHHHHHc
Confidence            89999988999999999999999986

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=100.00  E-value=1.2e-37  Score=259.46  Aligned_cols=182  Identities=46%  Similarity=0.825  Sum_probs=160.6

Q ss_pred             CCCCCchhhcCchHHHHHHHHHHhcchhhhHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHh
Q 041250           72 DNPLSEYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVN  151 (259)
Q Consensus        72 ~~~~~~~l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~  151 (259)
                      +.++++|+.++|+..+.|+++|...+......+.+. .+.+++..+|||||||+|.++.+++++||+++++++|+|++++
T Consensus        39 G~~~~e~l~~~pe~~~~F~~aM~~~s~~~~~~~~~~-~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~  117 (244)
T d1fp2a2          39 GSGFWDFLDKNPEYNTSFNDAMASDSKLINLALRDC-DFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVE  117 (244)
T ss_dssp             SSCHHHHHHHCHHHHHHHHHHHHHTHHHHHHHHHTC-HHHHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHT
T ss_pred             CCCHHHHHHhCHHHHHHHHHHhhhhhhhhhhhHhhh-cccccCceEEEEecCCccHHHHHHHHhCCCCeEEEecCHHHHH
Confidence            345669999999999999999999887765655443 2337888999999999999999999999999999999999999


Q ss_pred             hcccCCCCeEEEeCCCCCCCCCccEEeehhhhccCChHHHHHHHHHHHHhcccCCCC---cEEEEEeeeecCCCCCchhh
Q 041250          152 GLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKK---RKVIIKDMIKENRKKDYKSI  228 (259)
Q Consensus       152 ~a~~~~~ri~~~~~d~~~~~~~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~g---g~lli~e~~~~~~~~~~~~~  228 (259)
                      .+. ..+||+++.+||++++|++|+|+++++||+|+|+++++||++++++|+|   |   |+++|+|.+++++...+...
T Consensus       118 ~~~-~~~rv~~~~gD~f~~~p~aD~~~l~~vLHdw~d~~~~~iL~~~~~al~p---gg~~~~lli~e~~~~~~~~~~~~~  193 (244)
T d1fp2a2         118 NLS-GSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTN---DGKRGKVTIIDMVIDKKKDENQVT  193 (244)
T ss_dssp             TCC-CBTTEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHHSG---GGCCCEEEEEECEECTTTSCHHHH
T ss_pred             hCc-ccCceEEEecCcccCCCCCcEEEEEeecccCChHHHHHHHHHHHHHcCc---ccCCcEEEEEEeecCCCCCCchHH
Confidence            887 7899999999999998999999999999999999999999999999999   6   89999999999887765433


Q ss_pred             hhhhhhhhhhhhccCccccCHHHHHHHHhcC
Q 041250          229 ETQLFFEMFMMVLLTGTERDEKEWAKIFADS  259 (259)
Q Consensus       229 ~~~~~~d~~m~~~~~g~~rt~~e~~~ll~~a  259 (259)
                      .....+|++|++ .+|++||.+||++||++|
T Consensus       194 ~~~~~~dl~m~~-~~G~ert~~e~~~ll~~A  223 (244)
T d1fp2a2         194 QIKLLMDVNMAC-LNGKERNEEEWKKLFIEA  223 (244)
T ss_dssp             HHHHHHHHHGGG-GTCCCEEHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh-CCCcCCCHHHHHHHHHHc
Confidence            445678888875 689999999999999986

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=100.00  E-value=1.4e-36  Score=253.34  Aligned_cols=181  Identities=35%  Similarity=0.660  Sum_probs=163.7

Q ss_pred             CCCchhhcCchHHHHHHHHHHhcchhhhHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhc
Q 041250           74 PLSEYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGL  153 (259)
Q Consensus        74 ~~~~~l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a  153 (259)
                      ++++|+.++|+..+.|.++|...+....+.+++.+++ +++..+|||||||+|.+++++++++|+++++++|+|++++.+
T Consensus        42 ~~~~~~~~~p~~~~~F~~aM~~~~~~~~~~~~~~~~~-~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~  120 (243)
T d1kyza2          42 TAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTG-FEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDA  120 (243)
T ss_dssp             CHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHHHCCT-TSSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTTTTTC
T ss_pred             CHHHHHHhCHHHHHHHHHHHhHhhhhHHHHHHHhccc-ccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHhhhhc
Confidence            4458999999999999999999888888889999883 466789999999999999999999999999999999999887


Q ss_pred             ccCCCCeEEEeCCCCCCCCCccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhh
Q 041250          154 ESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLF  233 (259)
Q Consensus       154 ~~~~~ri~~~~~d~~~~~~~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~  233 (259)
                      + ..+|++++.+|+++++|.+|+|++++++|+|++++++++|++++++|+|   ||+++|+|.++++....+........
T Consensus       121 ~-~~~r~~~~~~d~~~~~P~ad~~~l~~vlh~~~d~~~~~iL~~~~~al~p---gg~~li~d~~~~~~~~~~~~~~~~~~  196 (243)
T d1kyza2         121 P-SYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFLKNCYEALPD---NGKVIVAECILPVAPDSSLATKGVVH  196 (243)
T ss_dssp             C-CCTTEEEEECCTTTCCCCCSCEECSSSSTTSCHHHHHHHHHHHHHHCCS---SSCEEEEECEECSSCCCCHHHHHHHH
T ss_pred             c-cCCceEEecccccccCCCcceEEEEEEeecCCHHHHHHHHHHHHHhcCC---CceEEEEEEEecCCCCCchhhHHHHH
Confidence            7 7789999999999999999999999999999999999999999999999   99999999999887765433344568


Q ss_pred             hhhhhhhcc-CccccCHHHHHHHHhcC
Q 041250          234 FEMFMMVLL-TGTERDEKEWAKIFADS  259 (259)
Q Consensus       234 ~d~~m~~~~-~g~~rt~~e~~~ll~~a  259 (259)
                      +|++||+++ +|++||.+||++||++|
T Consensus       197 ~d~~ml~~~~~g~ert~~e~~~ll~~A  223 (243)
T d1kyza2         197 IDVIMLAHNPGGKERTQKEFEDLAKGA  223 (243)
T ss_dssp             HHHHHHHHCSSCCCEEHHHHHHHHHHH
T ss_pred             HHHHHHhhCCCCCcCCHHHHHHHHHHc
Confidence            999999875 89999999999999875

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=100.00  E-value=1.1e-35  Score=249.61  Aligned_cols=179  Identities=24%  Similarity=0.401  Sum_probs=159.1

Q ss_pred             CCCchhhcCchHHHHHHHHHHhcchhhhHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhc
Q 041250           74 PLSEYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGL  153 (259)
Q Consensus        74 ~~~~~l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a  153 (259)
                      ++++|+.++|+..+.|.++|...+....+.+++.++  +++..+|||||||+|.++..+++++|+++++++|+|++++.+
T Consensus        43 ~~~e~~~~~p~~~~~f~~~m~~~~~~~~~~~~~~~d--~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a  120 (256)
T d1qzza2          43 PFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD--WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERA  120 (256)
T ss_dssp             CHHHHHHHCHHHHHHHHHTCGGGSTTTTHHHHHTSC--CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHH
T ss_pred             CHHHHHHhCHHHHHHHHHHHHhhHHHHHHHHHhcCC--CccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecChHHHHHH
Confidence            345889999999999999999998888999999999  899999999999999999999999999999999999999887


Q ss_pred             cc------CCCCeEEEeCCCCCCCC-CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCch
Q 041250          154 ES------DLVNLKYVGGDMFKAIS-PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYK  226 (259)
Q Consensus       154 ~~------~~~ri~~~~~d~~~~~~-~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~  226 (259)
                      ++      ..+|++++.+|+++++| ++|+|+++++||+|+++++.++|++++++|+|   ||+++|+|.+.+++.... 
T Consensus       121 ~~~~~~~~~~~ri~~~~~d~~~~~p~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~Lkp---gG~llI~d~~~~~~~~~~-  196 (256)
T d1qzza2         121 RRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEP---GGRLLVLDRADVEGDGAD-  196 (256)
T ss_dssp             HHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEECCH--------
T ss_pred             HHHHhhcCCcceeeeeeeeccccccccchhhhccccccccCcHHHHHHHHHHHhhcCC---cceeEEEEeccCCCCccc-
Confidence            75      56899999999999777 69999999999999999999999999999999   999999999876654432 


Q ss_pred             hhhhhhhhhhhhhhccCccccCHHHHHHHHhcC
Q 041250          227 SIETQLFFEMFMMVLLTGTERDEKEWAKIFADS  259 (259)
Q Consensus       227 ~~~~~~~~d~~m~~~~~g~~rt~~e~~~ll~~a  259 (259)
                       ......+|+.|++.++|++||.+||++||++|
T Consensus       197 -~~~~~~~d~~ml~~~~g~~rt~~e~~~ll~~A  228 (256)
T d1qzza2         197 -RFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSA  228 (256)
T ss_dssp             -HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTT
T ss_pred             -HHHHHHHHHHHHhhCCCccCCHHHHHHHHHHC
Confidence             13457889999999999999999999999986

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=100.00  E-value=3.3e-34  Score=240.30  Aligned_cols=178  Identities=26%  Similarity=0.481  Sum_probs=161.9

Q ss_pred             CCCchhhcCchHHHHHHHHHHhcchhhhHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhc
Q 041250           74 PLSEYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGL  153 (259)
Q Consensus        74 ~~~~~l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a  153 (259)
                      ++++|+.++|+..+.|..+|...+....+.+++.++  +++..+|||||||+|.++..+++++|+++++++|+|++++.+
T Consensus        42 ~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~d--~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~~~~~~~a  119 (253)
T d1tw3a2          42 PFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD--WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTA  119 (253)
T ss_dssp             CHHHHHHTCHHHHHHHHHHHTTTTTTTTHHHHHHSC--CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHH
T ss_pred             CHHHHHhhCHHHHHHHHHHHHHhHHHHHHHHHhhcC--CccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccCHHHHHHH
Confidence            445889999999999999999998888899999999  888899999999999999999999999999999999999888


Q ss_pred             cc------CCCCeEEEeCCCCCCCC-CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCch
Q 041250          154 ES------DLVNLKYVGGDMFKAIS-PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYK  226 (259)
Q Consensus       154 ~~------~~~ri~~~~~d~~~~~~-~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~  226 (259)
                      ++      ..+|++++.+|++++.| +||+|+++++||+|+++++.++|++++++|+|   ||+|+|+|...+++...+ 
T Consensus       120 ~~~~~~~~~~~rv~~~~~D~~~~~~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkP---GG~l~i~e~~~~~~~~~~-  195 (253)
T d1tw3a2         120 RSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEP---GGRILIHERDDLHENSFN-  195 (253)
T ss_dssp             HHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEE---EEEEEEEECCBCGGGCCS-
T ss_pred             HHHHHHhhcccchhhccccchhhcccchhheeeccccccCCchhhHHHHHHHHHhcCC---CcEEEEEeccCCCCCcch-
Confidence            76      56899999999999766 69999999999999999999999999999999   999999998777665543 


Q ss_pred             hhhhhhhhhhhhhhccCccccCHHHHHHHHhcC
Q 041250          227 SIETQLFFEMFMMVLLTGTERDEKEWAKIFADS  259 (259)
Q Consensus       227 ~~~~~~~~d~~m~~~~~g~~rt~~e~~~ll~~a  259 (259)
                        .....+|+.|++.++|++||.+||++++++|
T Consensus       196 --~~~~~~dl~~~~~~~g~~rt~~e~~~ll~~A  226 (253)
T d1tw3a2         196 --EQFTELDLRMLVFLGGALRTREKWDGLAASA  226 (253)
T ss_dssp             --HHHHHHHHHHHHHHSCCCCBHHHHHHHHHHT
T ss_pred             --hHHHHhhHHHHhhCCCcCCCHHHHHHHHHHC
Confidence              3456789999999999999999999999986

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.78  E-value=1.5e-18  Score=146.23  Aligned_cols=143  Identities=15%  Similarity=0.229  Sum_probs=109.9

Q ss_pred             HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-CCC-
Q 041250          102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AIS-  172 (259)
Q Consensus       102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~-  172 (259)
                      ..+....+  +++..+|||||||+|.++..+++++ +.+++++|+ +.+++.|++      ..++++++.+|+.+ |++ 
T Consensus        57 ~~l~~~~~--l~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~  133 (282)
T d2o57a1          57 SELAMTGV--LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCED  133 (282)
T ss_dssp             HHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCT
T ss_pred             HHHHHhcC--CCCCCEEEEeCCCCcHHHhhhhccC-CcEEEEEeccchhhhhhhcccccccccccccccccccccccccc
Confidence            44444555  7788999999999999999999876 579999999 888888776      46899999999998 666 


Q ss_pred             -CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccCHHH
Q 041250          173 -PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKE  251 (259)
Q Consensus       173 -~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~e  251 (259)
                       .||+|++..++|++++.  .++|++++++|+|   ||++++.++...+.....   ....+.+...    .....+.++
T Consensus       134 ~sfD~V~~~~~l~h~~d~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~---~~~~~~~~~~----~~~~~s~~~  201 (282)
T d2o57a1         134 NSYDFIWSQDAFLHSPDK--LKVFQECARVLKP---RGVMAITDPMKEDGIDKS---SIQPILDRIK----LHDMGSLGL  201 (282)
T ss_dssp             TCEEEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEEEECTTCCGG---GGHHHHHHHT----CSSCCCHHH
T ss_pred             cccchhhccchhhhccCH--HHHHHHHHHhcCC---CcEEEEEEeecCCCCchh---HHHHHHHHhc----cCCCCCHHH
Confidence             49999999999999875  4799999999999   999999998877654432   1111222111    123357788


Q ss_pred             HHHHHhcC
Q 041250          252 WAKIFADS  259 (259)
Q Consensus       252 ~~~ll~~a  259 (259)
                      |.++++++
T Consensus       202 ~~~~l~~~  209 (282)
T d2o57a1         202 YRSLAKEC  209 (282)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHc
Confidence            88877653

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.78  E-value=1.5e-18  Score=141.57  Aligned_cols=108  Identities=16%  Similarity=0.244  Sum_probs=95.6

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHH--CCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-CCCCccEEeehh
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKA--FPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AISPAYAVLLKW  181 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~~~D~~~~~~  181 (259)
                      .++..+|||||||+|..+..+++.  .|+.+++++|+ ++|++.|++      ...++.+..+|+.+ +.+.+|++++..
T Consensus        37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~  116 (225)
T d1im8a_          37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNF  116 (225)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEES
T ss_pred             cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEee
Confidence            456679999999999999999986  48999999999 999999986      45788889999987 566799999999


Q ss_pred             hhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCC
Q 041250          182 ILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRK  222 (259)
Q Consensus       182 vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~  222 (259)
                      ++|+++.++..++|++++++|+|   ||.+++.|...+.+.
T Consensus       117 ~l~~~~~~d~~~~l~~i~~~Lkp---gG~li~~~~~~~~~~  154 (225)
T d1im8a_         117 TLQFLPPEDRIALLTKIYEGLNP---NGVLVLSEKFRFEDT  154 (225)
T ss_dssp             CGGGSCGGGHHHHHHHHHHHEEE---EEEEEEEEECCCSSH
T ss_pred             eccccChhhHHHHHHHHHHhCCC---Cceeecccccccccc
Confidence            99999988888999999999999   999999998876654

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.77  E-value=1.4e-18  Score=141.85  Aligned_cols=143  Identities=15%  Similarity=0.290  Sum_probs=109.8

Q ss_pred             HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-CCC--
Q 041250          102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AIS--  172 (259)
Q Consensus       102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~~~--  172 (259)
                      ..+++..+  +++..+|||||||+|.++..+++..  .+++++|+ +++++.|++     ..++++|+.+|+.+ +++  
T Consensus         5 ~~ll~~~~--l~~~~rVLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~   80 (231)
T d1vl5a_           5 AKLMQIAA--LKGNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDE   80 (231)
T ss_dssp             HHHHHHHT--CCSCCEEEEETCTTCHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTT
T ss_pred             HHHHHhcC--CCCcCEEEEecccCcHHHHHHHHhC--CEEEEEECCHHHHhhhhhccccccccccccccccccccccccc
Confidence            34566666  7888999999999999999999885  47999999 888888875     56899999999998 766  


Q ss_pred             CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhh--hccCccccCHH
Q 041250          173 PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMM--VLLTGTERDEK  250 (259)
Q Consensus       173 ~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~--~~~~g~~rt~~  250 (259)
                      .||+|++.+++|+++|.  .++|++++++|+|   ||+++|.++..+....      .....+...-  ...+.+.++.+
T Consensus        81 ~fD~v~~~~~l~~~~d~--~~~l~~~~r~Lkp---gG~l~i~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~  149 (231)
T d1vl5a_          81 RFHIVTCRIAAHHFPNP--ASFVSEAYRVLKK---GGQLLLVDNSAPENDA------FDVFYNYVEKERDYSHHRAWKKS  149 (231)
T ss_dssp             CEEEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEEEBCSSHH------HHHHHHHHHHHHCTTCCCCCBHH
T ss_pred             ccccccccccccccCCH--HHHHHHHHHhcCC---CcEEEEEeCCCCCCHH------HHHHHHHHHhhcccCcccCCCHH
Confidence            49999999999999875  4789999999999   9999999987664321      1112222111  11244667888


Q ss_pred             HHHHHHhcC
Q 041250          251 EWAKIFADS  259 (259)
Q Consensus       251 e~~~ll~~a  259 (259)
                      +|.+++++|
T Consensus       150 ~~~~~l~~a  158 (231)
T d1vl5a_         150 DWLKMLEEA  158 (231)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHC
Confidence            998888753

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.75  E-value=2.6e-18  Score=142.85  Aligned_cols=139  Identities=16%  Similarity=0.302  Sum_probs=111.0

Q ss_pred             HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEeCCCCC-CCC--Cc
Q 041250          102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFK-AIS--PA  174 (259)
Q Consensus       102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~-~~~--~~  174 (259)
                      ..+++.++  ..+..+|||+|||+|.++..++..+++ +++++|. +.+++.|++   ...+++|+++|+.+ +.+  .|
T Consensus        83 ~~fl~~l~--~~~~~~vLD~GcG~G~~t~~ll~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f  159 (254)
T d1xtpa_          83 RNFIASLP--GHGTSRALDCGAGIGRITKNLLTKLYA-TTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTY  159 (254)
T ss_dssp             HHHHHTST--TCCCSEEEEETCTTTHHHHHTHHHHCS-EEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCE
T ss_pred             HHHHhhCC--CCCCCeEEEecccCChhhHHHHhhcCc-eEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCcc
Confidence            34555665  567789999999999999999887665 7999999 899999987   44678999999987 444  49


Q ss_pred             cEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccCHHHHHH
Q 041250          175 YAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAK  254 (259)
Q Consensus       175 D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~e~~~  254 (259)
                      |+|++.+++|++++++..++|++++++|+|   ||.|+|.|.+.......         .|.    ..+...||.++|++
T Consensus       160 D~I~~~~vl~hl~d~d~~~~l~~~~~~Lkp---gG~iii~e~~~~~~~~~---------~d~----~d~~~~rs~~~~~~  223 (254)
T d1xtpa_         160 DLIVIQWTAIYLTDADFVKFFKHCQQALTP---NGYIFFKENCSTGDRFL---------VDK----EDSSLTRSDIHYKR  223 (254)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEBC--CCEE---------EET----TTTEEEBCHHHHHH
T ss_pred             ceEEeeccccccchhhhHHHHHHHHHhcCC---CcEEEEEecCCCCCcce---------ecc----cCCceeCCHHHHHH
Confidence            999999999999999999999999999999   99999998865544321         111    12445689999999


Q ss_pred             HHhcC
Q 041250          255 IFADS  259 (259)
Q Consensus       255 ll~~a  259 (259)
                      +|++|
T Consensus       224 l~~~a  228 (254)
T d1xtpa_         224 LFNES  228 (254)
T ss_dssp             HHHHH
T ss_pred             HHHHc
Confidence            99864

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.75  E-value=6.7e-18  Score=138.34  Aligned_cols=143  Identities=16%  Similarity=0.298  Sum_probs=112.3

Q ss_pred             HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-CCC--
Q 041250          102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AIS--  172 (259)
Q Consensus       102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~~~--  172 (259)
                      .-+++..+  ++...+|||||||+|.++..++++.  .+++++|+ +.+++.|++     ..+++.++.+|..+ +++  
T Consensus         6 ~~l~~~~~--~~~~~rILDiGcGtG~~~~~la~~~--~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~   81 (234)
T d1xxla_           6 GLMIKTAE--CRAEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDD   81 (234)
T ss_dssp             HHHHHHHT--CCTTCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTT
T ss_pred             HHHHHHhC--CCCCCEEEEeCCcCcHHHHHHHHhC--CeEEEEeCChhhhhhhhhhhccccccccccccccccccccccc
Confidence            44667777  8889999999999999999999986  47999999 888888876     45789999999988 666  


Q ss_pred             CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhh-hh-ccCccccCHH
Q 041250          173 PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFM-MV-LLTGTERDEK  250 (259)
Q Consensus       173 ~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m-~~-~~~g~~rt~~  250 (259)
                      .||+|++.+++|+++|.  .++|++++++|+|   ||++++.+...++...      ...+++... .. ....+..+..
T Consensus        82 ~fD~v~~~~~l~~~~d~--~~~l~~~~r~Lkp---gG~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~  150 (234)
T d1xxla_          82 SFDIITCRYAAHHFSDV--RKAVREVARVLKQ---DGRFLLVDHYAPEDPV------LDEFVNHLNRLRDPSHVRESSLS  150 (234)
T ss_dssp             CEEEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEECBCSSHH------HHHHHHHHHHHHCTTCCCCCBHH
T ss_pred             ccceeeeeceeecccCH--HHHHHHHHHeeCC---CcEEEEEEcCCCCCHH------HHHHHHHHHhhCCCcccccCCHH
Confidence            49999999999999874  5899999999999   9999999886554321      112222211 11 1356778899


Q ss_pred             HHHHHHhcC
Q 041250          251 EWAKIFADS  259 (259)
Q Consensus       251 e~~~ll~~a  259 (259)
                      +|..+++++
T Consensus       151 ~~~~~~~~~  159 (234)
T d1xxla_         151 EWQAMFSAN  159 (234)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHC
Confidence            999998764

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=1.1e-17  Score=137.92  Aligned_cols=114  Identities=8%  Similarity=0.031  Sum_probs=96.9

Q ss_pred             HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCCCC--
Q 041250          102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAIS--  172 (259)
Q Consensus       102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~--  172 (259)
                      ..+.+.+.  +....+|||||||+|.++..++++++ .+++++|+ +.+++.|++      ..+|++|+.+|+.+..+  
T Consensus        23 ~~l~~~~~--l~pg~~VLDiGCG~G~~~~~la~~~~-~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~~~   99 (245)
T d1nkva_          23 ATLGRVLR--MKPGTRILDLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANE   99 (245)
T ss_dssp             HHHHHHTC--CCTTCEEEEETCTTCHHHHHHHHHTC-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSS
T ss_pred             HHHHHHcC--CCCCCEEEEEcCCCCHHHHHHHHhcC-CEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhccccC
Confidence            44666666  77789999999999999999998875 79999999 888888776      46789999999988433  


Q ss_pred             CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCC
Q 041250          173 PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKK  223 (259)
Q Consensus       173 ~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~  223 (259)
                      +||+|++..++|+++|.  .++|++++++|+|   ||++++.++.......
T Consensus       100 ~fD~v~~~~~~~~~~d~--~~~l~~~~r~LkP---GG~l~i~~~~~~~~~~  145 (245)
T d1nkva_         100 KCDVAACVGATWIAGGF--AGAEELLAQSLKP---GGIMLIGEPYWRQLPA  145 (245)
T ss_dssp             CEEEEEEESCGGGTSSS--HHHHHHHTTSEEE---EEEEEEEEEEETTCCS
T ss_pred             ceeEEEEEehhhccCCH--HHHHHHHHHHcCc---CcEEEEEeccccCCCC
Confidence            59999999999999874  4799999999999   9999999987665443

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=4.7e-18  Score=138.30  Aligned_cols=129  Identities=16%  Similarity=0.284  Sum_probs=104.9

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-CCC--CccEEeehhhh
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AIS--PAYAVLLKWIL  183 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~~~--~~D~~~~~~vl  183 (259)
                      .+..+|||||||+|.++..+++..+. +++++|+ +.+++.|++     ...+++|+++|+.+ +.+  .||+|++..++
T Consensus        59 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~l  137 (222)
T d2ex4a1          59 TGTSCALDCGAGIGRITKRLLLPLFR-EVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVI  137 (222)
T ss_dssp             CCCSEEEEETCTTTHHHHHTTTTTCS-EEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCG
T ss_pred             CCCCEEEEeccCCCHhhHHHHHhcCC-EEEEeecCHHHhhcccccccccccccccccccccccccccccccccccccccc
Confidence            45678999999999999999877654 7999999 899998876     34678999999988 443  59999999999


Q ss_pred             ccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccCHHHHHHHHhcC
Q 041250          184 LDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAKIFADS  259 (259)
Q Consensus       184 h~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~e~~~ll~~a  259 (259)
                      |++++++..++|+++++.|+|   ||.+++.+...++....          +    .......|+.++|+++|+++
T Consensus       138 ~h~~~~~~~~~l~~i~~~Lk~---~G~~~i~~~~~~~~~~~----------~----~~~~~~~~~~~~~~~l~~~a  196 (222)
T d2ex4a1         138 GHLTDQHLAEFLRRCKGSLRP---NGIIVIKDNMAQEGVIL----------D----DVDSSVCRDLDVVRRIICSA  196 (222)
T ss_dssp             GGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEEBSSSEEE----------E----TTTTEEEEBHHHHHHHHHHT
T ss_pred             ccchhhhhhhHHHHHHHhcCC---cceEEEEEccccccccc----------c----cCCceeeCCHHHHHHHHHHc
Confidence            999999888999999999999   99999998875543211          0    01234567899999998864

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.66  E-value=4e-16  Score=126.15  Aligned_cols=100  Identities=14%  Similarity=0.203  Sum_probs=87.8

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCC-CCC--CccEEeehhhhc
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-AIS--PAYAVLLKWILL  184 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~~~--~~D~~~~~~vlh  184 (259)
                      +...+|||||||+|.++..+++.  +.+++++|+ +.+++.|++    ...++.++.+|+.+ +++  .||+|++..++|
T Consensus        36 ~~~~~ILDiGcG~G~~~~~la~~--~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~  113 (226)
T d1ve3a1          36 KKRGKVLDLACGVGGFSFLLEDY--GFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIV  113 (226)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGG
T ss_pred             CCCCEEEEECCCcchhhhhHhhh--hcccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEecchh
Confidence            45679999999999999999986  568999999 899988876    45678999999988 665  599999999999


Q ss_pred             cCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250          185 DWNDEECVKILKKCKEAITRDGKKRKVIIKDMI  217 (259)
Q Consensus       185 ~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~  217 (259)
                      ++++++..++|+++.++|+|   ||+++|....
T Consensus       114 ~~~~~d~~~~l~~i~~~Lkp---gG~lii~~~~  143 (226)
T d1ve3a1         114 HFEPLELNQVFKEVRRVLKP---SGKFIMYFTD  143 (226)
T ss_dssp             GCCHHHHHHHHHHHHHHEEE---EEEEEEEEEC
T ss_pred             hCChhHHHHHHHHHHHHcCc---CcEEEEEEcC
Confidence            99988888999999999999   9998887654

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.63  E-value=1.1e-15  Score=121.85  Aligned_cols=110  Identities=15%  Similarity=0.186  Sum_probs=91.6

Q ss_pred             HHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-CCC-Cc
Q 041250          103 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AIS-PA  174 (259)
Q Consensus       103 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~~~-~~  174 (259)
                      .++....  +..+.+|||||||+|..+..++++  +.+++++|+ +.+++.+++     ..+++++...|+.+ +.+ .|
T Consensus        21 ~~~~~~~--~~~~grvLDiGcG~G~~~~~la~~--g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~f   96 (198)
T d2i6ga1          21 DVLAAAK--VVAPGRTLDLGCGNGRNSLYLAAN--GYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEY   96 (198)
T ss_dssp             HHHHHHT--TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCCCCE
T ss_pred             HHHHHcc--cCCCCcEEEECCCCCHHHHHHHHH--hhhhccccCcHHHHHHHHHHhhhccccchhhhheecccccccccc
Confidence            3555555  444569999999999999999998  458999999 788887765     45789999999988 433 59


Q ss_pred             cEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250          175 YAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKE  219 (259)
Q Consensus       175 D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~  219 (259)
                      |+|++..++|++++++..+++++++++|+|   ||.+++......
T Consensus        97 D~I~~~~~~~~~~~~~~~~~l~~~~~~L~p---gG~~~~~~~~~~  138 (198)
T d2i6ga1          97 DFILSTVVMMFLEAQTIPGLIANMQRCTKP---GGYNLIVAAMDT  138 (198)
T ss_dssp             EEEEEESCGGGSCTTHHHHHHHHHHHTEEE---EEEEEEEEEBC-
T ss_pred             cEEEEeeeeecCCHHHHHHHHHHHHHHcCC---CcEEEEEEecCC
Confidence            999999999999999889999999999999   899888776543

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.63  E-value=5.1e-16  Score=130.57  Aligned_cols=101  Identities=17%  Similarity=0.220  Sum_probs=89.2

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCC-CeEEEeec-hHHHhhccc----CCCCeEEEeCCCCC-CCC-CccEEeehhhh
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPK-LECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-AIS-PAYAVLLKWIL  183 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~~~-~~D~~~~~~vl  183 (259)
                      +.++.+|||||||+|.++..+++.+|. .+++++|+ +.+++.|++    ...+++|+.+|+.+ +++ +||+|++.+++
T Consensus        25 ~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~~~fD~v~~~~~l  104 (281)
T d2gh1a1          25 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFL  104 (281)
T ss_dssp             CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEEEEEEESCG
T ss_pred             cCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccccccccccCCceEEEEehhh
Confidence            677889999999999999999998875 78999999 888998876    45589999999988 555 59999999999


Q ss_pred             ccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250          184 LDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI  217 (259)
Q Consensus       184 h~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~  217 (259)
                      |++++.+  ++|++++++|+|   ||++++.|+.
T Consensus       105 ~~~~d~~--~~l~~~~~~Lkp---gG~lii~~~~  133 (281)
T d2gh1a1         105 LHMTTPE--TMLQKMIHSVKK---GGKIICFEPH  133 (281)
T ss_dssp             GGCSSHH--HHHHHHHHTEEE---EEEEEEEECC
T ss_pred             hcCCCHH--HHHHHHHHHcCc---CcEEEEEECC
Confidence            9998854  799999999999   9999999864

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.62  E-value=1.8e-15  Score=119.54  Aligned_cols=110  Identities=6%  Similarity=0.015  Sum_probs=92.6

Q ss_pred             HHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----------------CCCCeEEEeCC
Q 041250          105 IQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----------------DLVNLKYVGGD  166 (259)
Q Consensus       105 ~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------------~~~ri~~~~~d  166 (259)
                      +..+.  .+++.+|||+|||+|..+..|+++  +.+++++|+ +.+++.|++                 ....+.+..+|
T Consensus        13 ~~~l~--~~~~~rvLd~GCG~G~~a~~la~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   88 (201)
T d1pjza_          13 WSSLN--VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGD   88 (201)
T ss_dssp             HHHHC--CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEEC
T ss_pred             HHHcC--CCCCCEEEEecCcCCHHHHHHHHc--CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccc
Confidence            44444  677889999999999999999998  789999999 899988876                 14567889999


Q ss_pred             CCCCCC----CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCC
Q 041250          167 MFKAIS----PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENR  221 (259)
Q Consensus       167 ~~~~~~----~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~  221 (259)
                      +++..+    .+|+|+.+.++|+.+++.....++++++.|+|   ||++++........
T Consensus        89 ~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~Lkp---gG~l~l~~~~~~~~  144 (201)
T d1pjza_          89 FFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQ---ACSGLLITLEYDQA  144 (201)
T ss_dssp             CSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCS---EEEEEEEEESSCSS
T ss_pred             ccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCC---CcEEEEEEcccccc
Confidence            988332    59999999999999999889999999999999   99988877655443

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.62  E-value=1.7e-15  Score=121.44  Aligned_cols=127  Identities=11%  Similarity=0.020  Sum_probs=94.4

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCC-CCC--CccEEeehhhhccCChH
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK-AIS--PAYAVLLKWILLDWNDE  189 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~~--~~D~~~~~~vlh~~~d~  189 (259)
                      +..+|||||||+|.++..+.      +.+++|+ +.+++.+++  .+++++.+|+.+ +.+  .||+|++.++||++++.
T Consensus        36 ~~~~vLDiGcG~G~~~~~~~------~~~giD~s~~~~~~a~~--~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~d~  107 (208)
T d1vlma_          36 PEGRGVEIGVGTGRFAVPLK------IKIGVEPSERMAEIARK--RGVFVLKGTAENLPLKDESFDFALMVTTICFVDDP  107 (208)
T ss_dssp             CSSCEEEETCTTSTTHHHHT------CCEEEESCHHHHHHHHH--TTCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCH
T ss_pred             CCCeEEEECCCCcccccccc------eEEEEeCChhhcccccc--ccccccccccccccccccccccccccccccccccc
Confidence            34689999999999988773      3589999 899998884  378999999988 655  59999999999999874


Q ss_pred             HHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhh-hhccCccccCHHHHHHHHhcC
Q 041250          190 ECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFM-MVLLTGTERDEKEWAKIFADS  259 (259)
Q Consensus       190 ~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m-~~~~~g~~rt~~e~~~ll~~a  259 (259)
                        .++|++++++|+|   ||++++.++.....     ... ....+... ....+...+|.+++.++++++
T Consensus       108 --~~~l~~~~~~L~p---gG~l~i~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~  167 (208)
T d1vlma_         108 --ERALKEAYRILKK---GGYLIVGIVDRESF-----LGR-EYEKNKEKSVFYKNARFFSTEELMDLMRKA  167 (208)
T ss_dssp             --HHHHHHHHHHEEE---EEEEEEEEECSSSH-----HHH-HHHHTTTC-CCSTTCCCCCHHHHHHHHHHT
T ss_pred             --ccchhhhhhcCCC---CceEEEEecCCcch-----hHH-hhhhccccccccccccCCCHHHHHHHHHHc
Confidence              5899999999999   99999988632210     000 00111111 112355678999999999864

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.60  E-value=2.4e-15  Score=123.72  Aligned_cols=104  Identities=18%  Similarity=0.296  Sum_probs=86.8

Q ss_pred             HHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCC-CCC-CccE
Q 041250          104 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-AIS-PAYA  176 (259)
Q Consensus       104 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~~~-~~D~  176 (259)
                      +++.+.  ..+..+|||||||+|.++..++++.  .+++++|+ +.+++.|++    ...+++++.+|+.+ +.+ .||+
T Consensus        33 ~~~~~~--~~~~~~iLDiGcGtG~~~~~l~~~~--~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~~~fD~  108 (251)
T d1wzna1          33 IFKEDA--KREVRRVLDLACGTGIPTLELAERG--YEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDA  108 (251)
T ss_dssp             HHHHTC--SSCCCEEEEETCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEE
T ss_pred             HHHHhc--CCCCCEEEEeCCCCCccchhhcccc--eEEEEEeeccccccccccccccccccchheehhhhhcccccccch
Confidence            344444  5566799999999999999999974  58999999 889999887    45689999999988 666 5999


Q ss_pred             Eeeh-hhhccCChHHHHHHHHHHHHhcccCCCCcEEEEE
Q 041250          177 VLLK-WILLDWNDEECVKILKKCKEAITRDGKKRKVIIK  214 (259)
Q Consensus       177 ~~~~-~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~  214 (259)
                      |++. .++|+++.++..+.|+++++.|+|   ||++++.
T Consensus       109 I~~~~~~~~~~~~~~~~~~L~~~~~~Lkp---gG~lii~  144 (251)
T d1wzna1         109 VTMFFSTIMYFDEEDLRKLFSKVAEALKP---GGVFITD  144 (251)
T ss_dssp             EEECSSGGGGSCHHHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred             HhhhhhhhhcCChHHHHHHHHHHHHHcCC---CcEEEEE
Confidence            8876 688888878888999999999999   8887764

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.59  E-value=1e-14  Score=122.38  Aligned_cols=113  Identities=12%  Similarity=0.185  Sum_probs=95.5

Q ss_pred             HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCCCCCc
Q 041250          102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAISPA  174 (259)
Q Consensus       102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~~~  174 (259)
                      ..+++.+.  +++..+|||||||.|.++..++++++ .+++++|+ ++.++.|++      ...++.+...|+.+....|
T Consensus        42 ~~~~~~l~--l~~g~~VLDiGCG~G~~a~~~a~~~g-~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~~~f  118 (280)
T d2fk8a1          42 DLNLDKLD--LKPGMTLLDIGCGWGTTMRRAVERFD-VNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPV  118 (280)
T ss_dssp             HHHHTTSC--CCTTCEEEEESCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCC
T ss_pred             HHHHHHcC--CCCCCEEEEecCCchHHHHHHHHhCc-eeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhhccch
Confidence            45777777  88889999999999999999888875 69999999 777777665      4578888888877644469


Q ss_pred             cEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecC
Q 041250          175 YAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKEN  220 (259)
Q Consensus       175 D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~  220 (259)
                      |.|++..++++++++.-..+|+++++.|+|   ||+++|.+.+..+
T Consensus       119 D~i~si~~~eh~~~~~~~~~f~~i~~~Lkp---gG~~~i~~i~~~~  161 (280)
T d2fk8a1         119 DRIVSIEAFEHFGHENYDDFFKRCFNIMPA---DGRMTVQSSVSYH  161 (280)
T ss_dssp             SEEEEESCGGGTCGGGHHHHHHHHHHHSCT---TCEEEEEEEECCC
T ss_pred             hhhhHhhHHHHhhhhhHHHHHHHHHhccCC---CceEEEEEeeccC
Confidence            999999999999988778999999999999   9999998866543

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.57  E-value=3.7e-14  Score=119.04  Aligned_cols=152  Identities=11%  Similarity=0.123  Sum_probs=110.0

Q ss_pred             HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCCCCCc
Q 041250          102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAISPA  174 (259)
Q Consensus       102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~~~  174 (259)
                      ..+++.+.  +.+..+|||||||.|.++..+++++ +++++++++ +..++.|++      ..+++++..+|+.+....|
T Consensus        52 ~~~~~~l~--l~~G~~VLDiGCG~G~~a~~~a~~~-g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~f  128 (285)
T d1kpga_          52 DLALGKLG--LQPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPV  128 (285)
T ss_dssp             HHHHTTTT--CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCC
T ss_pred             HHHHHHcC--CCCCCEEEEecCcchHHHHHHHhcC-CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcccccc
Confidence            55677777  8888999999999999999999998 589999999 666665554      6789999999987633369


Q ss_pred             cEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCC-----Cchhhhhhhhhhhhhh-hccCccccC
Q 041250          175 YAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKK-----DYKSIETQLFFEMFMM-VLLTGTERD  248 (259)
Q Consensus       175 D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~-----~~~~~~~~~~~d~~m~-~~~~g~~rt  248 (259)
                      |.|+....+.++....-..++++++++|+|   ||++++.......+..     .+.........++..- ...+|...+
T Consensus       129 D~i~si~~~eh~~~~~~~~~~~~~~r~Lkp---gG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFpgg~lPs  205 (285)
T d1kpga_         129 DRIVSIGAFEHFGHERYDAFFSLAHRLLPA---DGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPS  205 (285)
T ss_dssp             SEEEEESCGGGTCTTTHHHHHHHHHHHSCT---TCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCC
T ss_pred             cceeeehhhhhcCchhHHHHHHHHHhhcCC---CCcEEEEEEeccCchhhccccCCcchhhhchhhHHHHHhccCCCCCC
Confidence            999998888888766566899999999999   9999998887543211     1100011111222111 123666677


Q ss_pred             HHHHHHHHhcC
Q 041250          249 EKEWAKIFADS  259 (259)
Q Consensus       249 ~~e~~~ll~~a  259 (259)
                      .+++..+++++
T Consensus       206 l~~~~~~~e~a  216 (285)
T d1kpga_         206 IPMVQECASAN  216 (285)
T ss_dssp             HHHHHHHHHTT
T ss_pred             hhhHHHHHHHh
Confidence            77777766653

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.55  E-value=2.2e-14  Score=116.43  Aligned_cols=97  Identities=13%  Similarity=0.249  Sum_probs=82.2

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-CCCCeEEEeCCCCC-CCC-CccEEeehhhhccCCh
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-DLVNLKYVGGDMFK-AIS-PAYAVLLKWILLDWND  188 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri~~~~~d~~~-~~~-~~D~~~~~~vlh~~~d  188 (259)
                      ..+.+|||||||+|.++..++++.  .+++++|+ +.+++.|++ ..+++.++.+|+.+ +.+ .||+|++.++||+.++
T Consensus        19 ~~~~~VLDiGcG~G~~~~~l~~~g--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~vleh~~d   96 (225)
T d2p7ia1          19 FRPGNLLELGSFKGDFTSRLQEHF--NDITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDD   96 (225)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTTC--SCEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCSS
T ss_pred             CCCCcEEEEeCCCcHHHHHHHHcC--CeEEEEeCcHHHhhhhhcccccccccccccccccccccccccccccceeEecCC
Confidence            346689999999999999998875  46999999 889999987 56789999999877 444 5999999999999987


Q ss_pred             HHHHHHHHHHH-HhcccCCCCcEEEEEee
Q 041250          189 EECVKILKKCK-EAITRDGKKRKVIIKDM  216 (259)
Q Consensus       189 ~~~~~il~~~~-~~L~p~~~gg~lli~e~  216 (259)
                      .  ..+|++++ +.|+|   ||.++|.-+
T Consensus        97 ~--~~~l~~i~~~~Lk~---gG~l~i~~p  120 (225)
T d2p7ia1          97 P--VALLKRINDDWLAE---GGRLFLVCP  120 (225)
T ss_dssp             H--HHHHHHHHHTTEEE---EEEEEEEEE
T ss_pred             H--HHHHHHHHHHhcCC---CceEEEEeC
Confidence            5  47899998 68999   888888643

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=3.2e-14  Score=115.83  Aligned_cols=116  Identities=7%  Similarity=-0.033  Sum_probs=93.6

Q ss_pred             hHHHHHhcccc--cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----------------------
Q 041250          101 TSVMIQKCKNV--FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----------------------  155 (259)
Q Consensus       101 ~~~~~~~~~~~--~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------------------  155 (259)
                      .+.+.+.+...  .....+|||+|||+|..+..|++.  +.++|++|+ +.+++.+++                      
T Consensus        30 ~~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~--G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~  107 (229)
T d2bzga1          30 HQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADR--GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKS  107 (229)
T ss_dssp             CHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEE
T ss_pred             CHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeee
Confidence            34444444321  456789999999999999999987  678999999 888877643                      


Q ss_pred             CCCCeEEEeCCCCC-C-CC--CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCC
Q 041250          156 DLVNLKYVGGDMFK-A-IS--PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENR  221 (259)
Q Consensus       156 ~~~ri~~~~~d~~~-~-~~--~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~  221 (259)
                      ...++++..+|+++ + .+  .+|+|+.+.++|++++++....++++.++|+|   ||++++.....+..
T Consensus       108 ~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~Lkp---gG~~~l~~~~~~~~  174 (229)
T d2bzga1         108 SSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGK---KFQYLLCVLSYDPT  174 (229)
T ss_dssp             TTSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEE---EEEEEEEEEECCTT
T ss_pred             cCCcEEEEEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCC---cceEEEEEcccCCC
Confidence            34689999999988 2 22  49999999999999999899999999999999   99988877765543

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.52  E-value=3.7e-14  Score=117.04  Aligned_cols=99  Identities=12%  Similarity=0.068  Sum_probs=82.1

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-CC-C--CccEEeehh
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AI-S--PAYAVLLKW  181 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~-~--~~D~~~~~~  181 (259)
                      ++..+|||||||+|..+..+++..+ .+++++|+ +.+++.|++      ...++.|..+|.+. +. +  .||+|++..
T Consensus        23 ~~~~~VLDlGCG~G~~~~~~~~~~~-~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~  101 (252)
T d1ri5a_          23 KRGDSVLDLGCGKGGDLLKYERAGI-GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF  101 (252)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHTC-SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred             CCcCEEEEecccCcHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEcc
Confidence            5568999999999999999988743 37999999 899988875      34589999999976 33 2  499999999


Q ss_pred             hhccC--ChHHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250          182 ILLDW--NDEECVKILKKCKEAITRDGKKRKVIIKD  215 (259)
Q Consensus       182 vlh~~--~d~~~~~il~~~~~~L~p~~~gg~lli~e  215 (259)
                      ++|+.  +.++..++|+++.+.|+|   ||++++..
T Consensus       102 ~l~~~~~~~~~~~~~l~~i~~~Lk~---gG~~i~~~  134 (252)
T d1ri5a_         102 SFHYAFSTSESLDIAQRNIARHLRP---GGYFIMTV  134 (252)
T ss_dssp             CGGGGGSSHHHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred             eeeecCCCHHHHHHHHHHHhceeCC---CCEEEEEe
Confidence            99986  446677899999999999   89887753

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.51  E-value=8.7e-14  Score=117.07  Aligned_cols=114  Identities=11%  Similarity=0.140  Sum_probs=94.2

Q ss_pred             HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCCCCCc
Q 041250          102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAISPA  174 (259)
Q Consensus       102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~~~  174 (259)
                      ..+++.+.  +++..+|||||||.|.++..++++++ ++++++++ ++.++.+++      ...++.+...|+..+...|
T Consensus        51 ~~~~~~l~--l~~G~~VLDiGCG~G~~~~~~a~~~g-~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~f  127 (291)
T d1kpia_          51 KLALDKLN--LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPV  127 (291)
T ss_dssp             HHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCC
T ss_pred             HHHHHhcC--CCCCCEEEEecCcchHHHHHHHHhcC-cceeeccchHHHHHHHHHHHHhhccchhhhhhhhccccccccc
Confidence            55677777  88899999999999999999999985 69999999 565555544      6789999999986544469


Q ss_pred             cEEeehhhhccCCh-------HHHHHHHHHHHHhcccCCCCcEEEEEeeeecCC
Q 041250          175 YAVLLKWILLDWND-------EECVKILKKCKEAITRDGKKRKVIIKDMIKENR  221 (259)
Q Consensus       175 D~~~~~~vlh~~~d-------~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~  221 (259)
                      |.|++...+.++++       +.-..+++++.+.|+|   ||++++.....++.
T Consensus       128 D~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~Lkp---gG~~~l~~i~~~~~  178 (291)
T d1kpia_         128 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPD---DGRMLLHTITIPDK  178 (291)
T ss_dssp             SEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCT---TCEEEEEEEECCCH
T ss_pred             ceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCC---CCceEEEEEeccCc
Confidence            99999988877765       3446899999999999   99999998887653

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.51  E-value=2.1e-14  Score=117.92  Aligned_cols=105  Identities=15%  Similarity=0.184  Sum_probs=83.2

Q ss_pred             HHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCC-CCC-CccE
Q 041250          104 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-AIS-PAYA  176 (259)
Q Consensus       104 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~~~-~~D~  176 (259)
                      +.+.+......+.+|||||||+|.++..++++.  .+++++|+ +.+++.|++    ...+++++.+|+.+ +.+ .||+
T Consensus        27 ~~~~~~~~~~~~~~vLDiGCG~G~~~~~l~~~g--~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~~~fD~  104 (246)
T d1y8ca_          27 IIEKCVENNLVFDDYLDLACGTGNLTENLCPKF--KNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDL  104 (246)
T ss_dssp             HHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGS--SEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEE
T ss_pred             HHHHHHHhCCCCCeEEEEeCcCCHHHHHHHHhC--CccEeeccchhhhhhccccccccCccceeeccchhhhcccccccc
Confidence            444443222445799999999999999999985  47999999 899998876    45689999999988 444 5998


Q ss_pred             Eeeh-hhhccC-ChHHHHHHHHHHHHhcccCCCCcEEEE
Q 041250          177 VLLK-WILLDW-NDEECVKILKKCKEAITRDGKKRKVII  213 (259)
Q Consensus       177 ~~~~-~vlh~~-~d~~~~~il~~~~~~L~p~~~gg~lli  213 (259)
                      |++. ++++++ +.++..++|+++++.|+|   ||.+++
T Consensus       105 i~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~~i~  140 (246)
T d1y8ca_         105 ITCCLDSTNYIIDSDDLKKYFKAVSNHLKE---GGVFIF  140 (246)
T ss_dssp             EEECTTGGGGCCSHHHHHHHHHHHHTTEEE---EEEEEE
T ss_pred             cceeeeeeeccCCHHHHHHHHHHHHHhCCC---CeEEEE
Confidence            8864 677666 567788899999999999   887664

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.48  E-value=4.1e-14  Score=117.97  Aligned_cols=93  Identities=14%  Similarity=0.217  Sum_probs=82.1

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCC-CCC--CccEEeehhhhccCCh
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK-AIS--PAYAVLLKWILLDWND  188 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~~--~~D~~~~~~vlh~~~d  188 (259)
                      .+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.|++..++++|..+|..+ +++  .||+|+..+++|+   
T Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~---  159 (268)
T d1p91a_          83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK---  159 (268)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCCC---
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHHH---
Confidence            4567999999999999999999999999999999 89999988877899999999988 665  4999998887775   


Q ss_pred             HHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250          189 EECVKILKKCKEAITRDGKKRKVIIKDMI  217 (259)
Q Consensus       189 ~~~~~il~~~~~~L~p~~~gg~lli~e~~  217 (259)
                            +++++++|+|   ||.+++..+.
T Consensus       160 ------~~e~~rvLkp---gG~l~~~~p~  179 (268)
T d1p91a_         160 ------AEELARVVKP---GGWVITATPG  179 (268)
T ss_dssp             ------HHHHHHHEEE---EEEEEEEEEC
T ss_pred             ------HHHHHHHhCC---CcEEEEEeeC
Confidence                  5678999999   9999988753

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.47  E-value=9.9e-14  Score=113.15  Aligned_cols=96  Identities=17%  Similarity=0.183  Sum_probs=78.2

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCC-CCC--CccEEee-hhhhccC
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK-AIS--PAYAVLL-KWILLDW  186 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~~--~~D~~~~-~~vlh~~  186 (259)
                      .++..+|||||||+|.++..+++.  +.+++++|+ +.+++.|++... ..++.+|+.+ +++  .||+|++ ..++|++
T Consensus        40 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~-~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~  116 (246)
T d2avna1          40 LKNPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGV-KNVVEAKAEDLPFPSGAFEAVLALGDVLSYV  116 (246)
T ss_dssp             CCSCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTC-SCEEECCTTSCCSCTTCEEEEEECSSHHHHC
T ss_pred             cCCCCEEEEECCCCchhccccccc--ceEEEEeecccccccccccccc-cccccccccccccccccccceeeecchhhhh
Confidence            456789999999999999999876  568999999 899999987221 1356788877 665  4999886 5799999


Q ss_pred             ChHHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250          187 NDEECVKILKKCKEAITRDGKKRKVIIKD  215 (259)
Q Consensus       187 ~d~~~~~il~~~~~~L~p~~~gg~lli~e  215 (259)
                      +|.+  ++|+++++.|+|   ||.+++..
T Consensus       117 ~d~~--~~l~~i~r~Lk~---gG~~ii~~  140 (246)
T d2avna1         117 ENKD--KAFSEIRRVLVP---DGLLIATV  140 (246)
T ss_dssp             SCHH--HHHHHHHHHEEE---EEEEEEEE
T ss_pred             hhHH--HHHHHHHhhcCc---CcEEEEEE
Confidence            8864  689999999999   88877754

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.46  E-value=2.2e-13  Score=108.01  Aligned_cols=106  Identities=14%  Similarity=0.256  Sum_probs=85.8

Q ss_pred             HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-------CCCCeEEEeCCCCCCCC-
Q 041250          102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-------DLVNLKYVGGDMFKAIS-  172 (259)
Q Consensus       102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~ri~~~~~d~~~~~~-  172 (259)
                      ..+++.++  ..+..+|||+|||+|.++..+++..|  +++++|+ +.+++.+++       ...++++..+|++++.+ 
T Consensus        42 ~lLi~~l~--~~~~~~VLDiGcG~G~~~~~la~~~~--~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~~  117 (194)
T d1dusa_          42 KILVENVV--VDKDDDILDLGCGYGVIGIALADEVK--STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKD  117 (194)
T ss_dssp             HHHHHHCC--CCTTCEEEEETCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTT
T ss_pred             HHHHHhCC--cCCCCeEEEEeecCChhHHHHHhhcc--ccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhcc
Confidence            34566666  66788999999999999999998876  6788898 888888876       34579999999998544 


Q ss_pred             -CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250          173 -PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKD  215 (259)
Q Consensus       173 -~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e  215 (259)
                       .||+|++..++|.. .+...++++++.+.|+|   ||++++..
T Consensus       118 ~~fD~Ii~~~p~~~~-~~~~~~~l~~~~~~Lkp---gG~l~i~~  157 (194)
T d1dusa_         118 RKYNKIITNPPIRAG-KEVLHRIIEEGKELLKD---NGEIWVVI  157 (194)
T ss_dssp             SCEEEEEECCCSTTC-HHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred             CCceEEEEcccEEec-chhhhhHHHHHHHhcCc---CcEEEEEE
Confidence             59999998887754 44467899999999999   89887643

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.43  E-value=3.7e-13  Score=109.50  Aligned_cols=109  Identities=14%  Similarity=0.091  Sum_probs=90.8

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEeCCCCCCC--C--CccEEeehhhh
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFKAI--S--PAYAVLLKWIL  183 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~~~--~--~~D~~~~~~vl  183 (259)
                      +.+..+|||+|||+|..+..+++..|+.+++++|+ |.+++.+++   ..+++..+.+|...+.  .  .+|++++.+.+
T Consensus        72 ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i~~~~  151 (230)
T d1g8sa_          72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYEDV  151 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEEEECC
T ss_pred             CCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEeeccc
Confidence            67789999999999999999999999999999999 888888776   5678888988888732  2  36777777777


Q ss_pred             ccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCc
Q 041250          184 LDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDY  225 (259)
Q Consensus       184 h~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~  225 (259)
                      |++++  ...+++++++.|+|   ||+++|.+.....+...+
T Consensus       152 ~~~~~--~~~~l~~~~r~LKp---gG~~~i~~k~~~~d~~~~  188 (230)
T d1g8sa_         152 AQPNQ--AEILIKNAKWFLKK---GGYGMIAIKARSIDVTKD  188 (230)
T ss_dssp             CSTTH--HHHHHHHHHHHEEE---EEEEEEEEEGGGTCSSSC
T ss_pred             cchHH--HHHHHHHHHHhccc---CceEEEEeeccccCCCCC
Confidence            76654  45789999999999   999999988777766554

>d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.42  E-value=7.6e-15  Score=100.83  Aligned_cols=70  Identities=19%  Similarity=0.184  Sum_probs=63.7

Q ss_pred             CHHHHHHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhhhhhhcCC
Q 041250            1 MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASKLLLKDN   73 (259)
Q Consensus         1 ~aL~~a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~~~l~~~~   73 (259)
                      |||++|+++||||+|.+  ||.|++|||+++|+++..+.|+|+++..++++. +.+++.|.+|+.|+.|.+|+
T Consensus        16 ~aL~~av~L~ifd~l~~--gp~s~~eLA~~~g~~~~~l~rlLr~l~a~gl~~-e~~~~~y~lt~~s~~L~~Dh   85 (85)
T d1tw3a1          16 MVVRTAATLRLVDHILA--GARTVKALAARTDTRPEALLRLIRHLVAIGLLE-EDAPGEFVPTEVGELLADDH   85 (85)
T ss_dssp             HHHHHHHHTTHHHHHHT--TCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEE-EEETTEEEECTTGGGGSTTS
T ss_pred             HHHHHHHHcCcHHHhcc--CCCCHHHHHHHhCcChhHHHHHHHHHHHCCCeE-ecCCCeEecCHHHHHhhcCC
Confidence            58999999999999986  899999999999999999999999999988652 45678999999999998875

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.38  E-value=3.6e-13  Score=106.08  Aligned_cols=102  Identities=19%  Similarity=0.196  Sum_probs=83.0

Q ss_pred             HHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC---CCC
Q 041250          103 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK---AIS  172 (259)
Q Consensus       103 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~---~~~  172 (259)
                      .++..+.  .....+|||||||+|.++..+++..  .+++++|+ |.+++.|++      ..+|++++.+|+.+   +.+
T Consensus        24 ~il~~l~--~~~g~~VLDiGcGsG~~s~~lA~~~--~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~   99 (186)
T d1l3ia_          24 LIMCLAE--PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIP   99 (186)
T ss_dssp             HHHHHHC--CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSC
T ss_pred             HHHHhcC--CCCCCEEEEEECCeEcccccccccc--eEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccC
Confidence            3455556  6778999999999999999998875  47999999 899998887      45899999999887   234


Q ss_pred             CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          173 PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       173 ~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      .||++++....++     ..++++.+.+.|+|   ||++++...
T Consensus       100 ~~D~v~~~~~~~~-----~~~~~~~~~~~Lkp---gG~lvi~~~  135 (186)
T d1l3ia_         100 DIDIAVVGGSGGE-----LQEILRIIKDKLKP---GGRIIVTAI  135 (186)
T ss_dssp             CEEEEEESCCTTC-----HHHHHHHHHHTEEE---EEEEEEEEC
T ss_pred             CcCEEEEeCcccc-----chHHHHHHHHHhCc---CCEEEEEee
Confidence            6999998765544     34689999999999   898887654

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1e-12  Score=112.49  Aligned_cols=112  Identities=14%  Similarity=0.138  Sum_probs=90.0

Q ss_pred             HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc--------------CCCCeEEEeCC
Q 041250          102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES--------------DLVNLKYVGGD  166 (259)
Q Consensus       102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------------~~~ri~~~~~d  166 (259)
                      ..+++.+.  +....+|||||||+|.++..+++.+|..+++++|+ +.+++.|++              ...+++|+.+|
T Consensus       141 ~~~~~~~~--l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd  218 (328)
T d1nw3a_         141 AQMIDEIK--MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD  218 (328)
T ss_dssp             HHHHHHSC--CCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECC
T ss_pred             HHHHHHcC--CCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECc
Confidence            45666666  77788999999999999999999999889999999 788777764              35689999999


Q ss_pred             CCC-CCC----CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCC
Q 041250          167 MFK-AIS----PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENR  221 (259)
Q Consensus       167 ~~~-~~~----~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~  221 (259)
                      +.+ ++.    .+|+|++.+.+| ++  +..+.|+++.+.|+|   ||+|++.+.+.+..
T Consensus       219 ~~~~~~~~~~~~advi~~~~~~f-~~--~~~~~l~e~~r~LKp---Gg~iv~~~~~~~~~  272 (328)
T d1nw3a_         219 FLSEEWRERIANTSVIFVNNFAF-GP--EVDHQLKERFANMKE---GGRIVSSKPFAPLN  272 (328)
T ss_dssp             TTSHHHHHHHHHCSEEEECCTTT-CH--HHHHHHHHHHTTCCT---TCEEEESSCSSCTT
T ss_pred             ccccccccccCcceEEEEcceec-ch--HHHHHHHHHHHhCCC---CcEEEEecccCCCC
Confidence            998 433    368888766554 33  346789999999999   99999988765543

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=2.2e-12  Score=107.60  Aligned_cols=132  Identities=12%  Similarity=0.132  Sum_probs=87.2

Q ss_pred             CCeEEEecCCchHHHHHHHH----HCCCC--eEEEeec-hHHHhhccc------CCCCeEE--EeCCCC-------CCC-
Q 041250          115 LNSLVDVGGGTGTAAKAIAK----AFPKL--ECTCFDL-PHVVNGLES------DLVNLKY--VGGDMF-------KAI-  171 (259)
Q Consensus       115 ~~~vlDvGgG~G~~~~~l~~----~~p~~--~~~~~D~-~~~~~~a~~------~~~ri~~--~~~d~~-------~~~-  171 (259)
                      ..+|||||||+|.++..+++    .+|+.  +++++|. +.+++.+++      ...++.+  ...++.       .+. 
T Consensus        41 ~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (280)
T d1jqea_          41 EIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKE  120 (280)
T ss_dssp             EEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSS
T ss_pred             CCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCC
Confidence            34799999999998777654    46665  5789998 788888765      2244444  333331       122 


Q ss_pred             -CCccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhh-hhhhc-cCccccC
Q 041250          172 -SPAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEM-FMMVL-LTGTERD  248 (259)
Q Consensus       172 -~~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~-~m~~~-~~g~~rt  248 (259)
                       ..||+|++.+++|+++|.  .+.|+++++.|+|   ||.++|...-  +.. .  .  ...+..+ ..... .....++
T Consensus       121 ~~~fD~I~~~~~l~~~~d~--~~~l~~l~~~Lkp---gG~l~i~~~~--~~~-~--~--~~l~~~~~~~~~~~~~~~~~~  188 (280)
T d1jqea_         121 LQKWDFIHMIQMLYYVKDI--PATLKFFHSLLGT---NAKMLIIVVS--GSS-G--W--DKLWKKYGSRFPQDDLCQYIT  188 (280)
T ss_dssp             CCCEEEEEEESCGGGCSCH--HHHHHHHHHTEEE---EEEEEEEEEC--TTS-H--H--HHHHHHHGGGSCCCTTSCCCC
T ss_pred             CCceeEEEEccceecCCCH--HHHHHHHHhhCCC---CCEEEEEEec--Ccc-h--H--HHHHHHHHHhcCCCcccccCC
Confidence             259999999999999874  4899999999999   8988887542  111 0  1  0111111 11111 2455688


Q ss_pred             HHHHHHHHhc
Q 041250          249 EKEWAKIFAD  258 (259)
Q Consensus       249 ~~e~~~ll~~  258 (259)
                      .++|.++|.+
T Consensus       189 ~~~~~~~L~~  198 (280)
T d1jqea_         189 SDDLTQMLDN  198 (280)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8889988865

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.34  E-value=2e-12  Score=103.58  Aligned_cols=108  Identities=14%  Similarity=0.063  Sum_probs=83.6

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEeCCCCCC-CC--CccEE-eehhhh
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFKA-IS--PAYAV-LLKWIL  183 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~~-~~--~~D~~-~~~~vl  183 (259)
                      +.+..+|||+|||+|..+..+++..|+.+++++|+ |.+++.+++   ..+++.++.+|...+ .+  .+|.+ ++.+.+
T Consensus        54 lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v~~~~  133 (209)
T d1nt2a_          54 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDI  133 (209)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEECC
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEEEecc
Confidence            67789999999999999999999999999999999 899988876   457999999998873 32  23222 222334


Q ss_pred             ccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCC
Q 041250          184 LDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKD  224 (259)
Q Consensus       184 h~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~  224 (259)
                      +++.+  ...+++++++.|+|   ||+++|.+.....+...
T Consensus       134 ~~~~~--~~~~l~~~~~~Lkp---gG~l~i~~~~~~~d~~~  169 (209)
T d1nt2a_         134 AQKNQ--IEILKANAEFFLKE---KGEVVIMVKARSIDSTA  169 (209)
T ss_dssp             CSTTH--HHHHHHHHHHHEEE---EEEEEEEEEHHHHCTTS
T ss_pred             cChhh--HHHHHHHHHHHhcc---CCeEEEEEEccccCCCC
Confidence            44443  45789999999999   99999988655444433

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.33  E-value=2.3e-12  Score=106.08  Aligned_cols=106  Identities=18%  Similarity=0.303  Sum_probs=80.9

Q ss_pred             HHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCCCC--CCcc
Q 041250          103 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFKAI--SPAY  175 (259)
Q Consensus       103 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~~~--~~~D  175 (259)
                      -+++.+.....+..+|||+|||+|.+++.+++.  +.+++++|+ |.+++.|++    ..-++++..+|+.+..  .+||
T Consensus       109 l~l~~l~~~~~~g~~VLDiGcGsG~l~i~aa~~--g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~~~~~~fD  186 (254)
T d2nxca1         109 LALKALARHLRPGDKVLDLGTGSGVLAIAAEKL--GGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFD  186 (254)
T ss_dssp             HHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEE
T ss_pred             HHHHHHHhhcCccCEEEEcccchhHHHHHHHhc--CCEEEEEECChHHHHHHHHHHHHcCCceeEEeccccccccccccc
Confidence            334444323456789999999999999988875  468999999 899988886    4456788999987743  3699


Q ss_pred             EEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 041250          176 AVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIK  218 (259)
Q Consensus       176 ~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~  218 (259)
                      +|+.+...     +...++++.++++|+|   ||++++.+...
T Consensus       187 ~V~ani~~-----~~l~~l~~~~~~~Lkp---GG~lilSgil~  221 (254)
T d2nxca1         187 LLVANLYA-----ELHAALAPRYREALVP---GGRALLTGILK  221 (254)
T ss_dssp             EEEEECCH-----HHHHHHHHHHHHHEEE---EEEEEEEEEEG
T ss_pred             hhhhcccc-----ccHHHHHHHHHHhcCC---CcEEEEEecch
Confidence            99875433     3356789999999999   99999877653

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.33  E-value=1.3e-12  Score=109.84  Aligned_cols=105  Identities=14%  Similarity=0.148  Sum_probs=78.6

Q ss_pred             HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----C-----CCCeEEEeCCCCC--
Q 041250          102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----D-----LVNLKYVGGDMFK--  169 (259)
Q Consensus       102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~-----~~ri~~~~~d~~~--  169 (259)
                      ..+.+.+.  ..+..+|||||||+|.++..|+++  +.+++++|+ +.+++.|++    .     ..+..+...|+..  
T Consensus        46 ~~l~~~l~--~~~~~~vLD~GcG~G~~~~~la~~--g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (292)
T d1xvaa_          46 AWLLGLLR--QHGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLD  121 (292)
T ss_dssp             HHHHHHHH--HTTCCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHH
T ss_pred             HHHHHHhh--hcCCCEEEEecCCCcHHHHHHHHc--CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccc
Confidence            33444444  456679999999999999999987  578999999 899998875    1     1345566677654  


Q ss_pred             -CCC---CccEEeeh-hhhccCCh-----HHHHHHHHHHHHhcccCCCCcEEEE
Q 041250          170 -AIS---PAYAVLLK-WILLDWND-----EECVKILKKCKEAITRDGKKRKVII  213 (259)
Q Consensus       170 -~~~---~~D~~~~~-~vlh~~~d-----~~~~~il~~~~~~L~p~~~gg~lli  213 (259)
                       ..|   .||+|++. .+++++++     ++..++|++++++|+|   ||.+++
T Consensus       122 ~~~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~  172 (292)
T d1xvaa_         122 KDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRP---GGLLVI  172 (292)
T ss_dssp             HHSCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEE---EEEEEE
T ss_pred             cccCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCc---CcEEEE
Confidence             122   58988754 57777653     5678899999999999   887665

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.32  E-value=4.7e-12  Score=100.94  Aligned_cols=98  Identities=19%  Similarity=0.210  Sum_probs=78.2

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-C--CC--CccEEeehhhh
Q 041250          115 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-A--IS--PAYAVLLKWIL  183 (259)
Q Consensus       115 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~--~~--~~D~~~~~~vl  183 (259)
                      ...|||||||+|.++..+++.+|+..++++|+ +.++..+.+     ..+++.++.+|+.. .  ++  .+|.+++.+..
T Consensus        30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~  109 (204)
T d2fcaa1          30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSD  109 (204)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCC
T ss_pred             CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhcccccccc
Confidence            34799999999999999999999999999998 777766554     56899999999876 2  44  48988877766


Q ss_pred             ccCChHH------HHHHHHHHHHhcccCCCCcEEEEEe
Q 041250          184 LDWNDEE------CVKILKKCKEAITRDGKKRKVIIKD  215 (259)
Q Consensus       184 h~~~d~~------~~~il~~~~~~L~p~~~gg~lli~e  215 (259)
                      ..+....      ...+|+.++++|+|   ||.|+|..
T Consensus       110 P~~k~~h~k~Rl~~~~~l~~~~r~Lkp---gG~l~i~T  144 (204)
T d2fcaa1         110 PWPKKRHEKRRLTYSHFLKKYEEVMGK---GGSIHFKT  144 (204)
T ss_dssp             CCCSGGGGGGSTTSHHHHHHHHHHHTT---SCEEEEEE
T ss_pred             ccchhhhcchhhhHHHHHHHHHHhCCC---CcEEEEEE
Confidence            5333221      13689999999999   99998864

>d1fp2a1 a.4.5.29 (A:8-108) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.31  E-value=8e-14  Score=98.46  Aligned_cols=73  Identities=37%  Similarity=0.542  Sum_probs=62.1

Q ss_pred             CHHHHHHHcCcchhhhcCCCCCCHHHHHHHcCCCcc---ccccceeccccccCCCC-CCCCceeecCHhhhhhhcCC
Q 041250            1 MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLS---KTQCFFAQQKLVSSGNN-NDEEQGYVLTNASKLLLKDN   73 (259)
Q Consensus         1 ~aL~~a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~---~l~~ll~~~~~~~~~~~-~~~~~~y~~t~~~~~l~~~~   73 (259)
                      |||++|+++||||+|++.++|.|++|||+++++++.   .+.|+|+.+...+++.. +.++++|.+||.|++|++++
T Consensus        24 ~aL~~aveLgi~d~l~~~~~p~t~~eLa~~~~~~~~~~~~L~RlLR~L~~~gi~~~~~~~~~~Y~lt~~s~~Lv~~~  100 (101)
T d1fp2a1          24 MSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLMRYLAHNGFFEIITKEEESYALTVASELLVRGS  100 (101)
T ss_dssp             HHHHHHHHTTHHHHHHHHTSCEEHHHHHHHHTCCGGGHHHHHHHHHHHHHTTSEEEEESSSEEEEECHHHHTTSTTS
T ss_pred             HHHHHHHHcCcHHHHHHcCCCCCHHHHHHHcCCCCccchHHHHHHHHHHhCCceeeecCCCCeEecCHHHHHhhcCC
Confidence            589999999999999865689999999999999764   48899999988886532 34667999999999998875

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.30  E-value=4.1e-12  Score=104.96  Aligned_cols=119  Identities=10%  Similarity=0.164  Sum_probs=96.0

Q ss_pred             HHHHHHhcchhh----hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHH-CCCCeEEEeec-hHHHhhccc-------
Q 041250           89 FNEAMASDARLA----TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKA-FPKLECTCFDL-PHVVNGLES-------  155 (259)
Q Consensus        89 f~~~m~~~~~~~----~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-------  155 (259)
                      |...|...++..    +..++..++  +.+..+|||+|||+|.++..|++. .|+.+++.+|+ +++++.|++       
T Consensus        69 ~~~~~~r~tqiiypkD~s~Ii~~l~--i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~  146 (264)
T d1i9ga_          69 YVMSMPRGPQVIYPKDAAQIVHEGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYG  146 (264)
T ss_dssp             HHTTSCSCSCCCCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHT
T ss_pred             HHhhccCCccccchHHHHHHHHHhC--CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhcc
Confidence            455566555532    455777777  888999999999999999999997 79999999999 899988876       


Q ss_pred             -CCCCeEEEeCCCCC-CCC--CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250          156 -DLVNLKYVGGDMFK-AIS--PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKE  219 (259)
Q Consensus       156 -~~~ri~~~~~d~~~-~~~--~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~  219 (259)
                       ..+++.++.+|+.+ +++  .||.|++     |.++.  ..++.+++++|+|   ||++++..+...
T Consensus       147 ~~~~nv~~~~~d~~~~~~~~~~fDaV~l-----dlp~P--~~~l~~~~~~Lkp---GG~lv~~~P~i~  204 (264)
T d1i9ga_         147 QPPDNWRLVVSDLADSELPDGSVDRAVL-----DMLAP--WEVLDAVSRLLVA---GGVLMVYVATVT  204 (264)
T ss_dssp             SCCTTEEEECSCGGGCCCCTTCEEEEEE-----ESSCG--GGGHHHHHHHEEE---EEEEEEEESSHH
T ss_pred             CCCceEEEEecccccccccCCCcceEEE-----ecCCH--HHHHHHHHhccCC---CCEEEEEeCccC
Confidence             36899999999987 555  4999876     35554  3679999999999   999988776544

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.30  E-value=5e-12  Score=101.55  Aligned_cols=98  Identities=14%  Similarity=0.265  Sum_probs=82.1

Q ss_pred             HHHhcccccCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCCCC---C
Q 041250          104 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAIS---P  173 (259)
Q Consensus       104 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~~---~  173 (259)
                      +++.++  +.+..+|||||||+|..+..+++.. |+.+++++|. +.+++.|++     ...++.++.+|..+..+   .
T Consensus        67 ~l~~l~--l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~~  144 (213)
T d1dl5a1          67 FMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSP  144 (213)
T ss_dssp             HHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred             HHHhhh--ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccccccc
Confidence            456666  7888999999999999999999865 7889999998 888988887     56899999999887332   5


Q ss_pred             ccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEE
Q 041250          174 AYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIK  214 (259)
Q Consensus       174 ~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~  214 (259)
                      ||+|++...+++.+++        +.+.|+|   ||+|++.
T Consensus       145 fD~I~~~~~~~~~p~~--------l~~~Lkp---GG~lv~p  174 (213)
T d1dl5a1         145 YDVIFVTVGVDEVPET--------WFTQLKE---GGRVIVP  174 (213)
T ss_dssp             EEEEEECSBBSCCCHH--------HHHHEEE---EEEEEEE
T ss_pred             hhhhhhhccHHHhHHH--------HHHhcCC---CcEEEEE
Confidence            9999999999988753        4567999   9998774

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.5e-12  Score=105.84  Aligned_cols=98  Identities=13%  Similarity=0.023  Sum_probs=75.9

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCC---CCC--CccEEe----
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK---AIS--PAYAVL----  178 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~---~~~--~~D~~~----  178 (259)
                      ....+|||||||+|..+..+++..| .+++++|+ |.+++.|++    ...++.++.+|...   +++  .||.++    
T Consensus        52 ~~g~~VLdIGcG~G~~a~~~a~~~~-~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~  130 (229)
T d1zx0a1          52 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY  130 (229)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred             cCCCeEEEeeccchHHHHHHHHcCC-CeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeeccc
Confidence            4467999999999999999988765 47999999 899998876    45678888887654   344  477766    


Q ss_pred             -ehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          179 -LKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       179 -~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                       ....++++.+  ...++++++++|+|   ||++++.+.
T Consensus       131 ~~~~~~~~~~~--~~~~~~~~~r~Lkp---GG~~~~~~~  164 (229)
T d1zx0a1         131 PLSEETWHTHQ--FNFIKNHAFRLLKP---GGVLTYCNL  164 (229)
T ss_dssp             CCBGGGTTTHH--HHHHHHTHHHHEEE---EEEEEECCH
T ss_pred             ccccccccccC--HHHHHHHHHHHcCC---CcEEEEEec
Confidence             4566666665  44799999999999   898876543

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.26  E-value=9.5e-12  Score=102.00  Aligned_cols=104  Identities=20%  Similarity=0.162  Sum_probs=82.0

Q ss_pred             HHHHHhcccccCCCCeEEEecCCchHHHHHHHHH-CCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCCCC-
Q 041250          102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKA-FPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAIS-  172 (259)
Q Consensus       102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~-  172 (259)
                      ..++..++  +....+|||+|||+|.++..+++. .|+.+++++|. ++.++.|++      ...++++..+|+.+..+ 
T Consensus        75 ~~Ii~~l~--i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~  152 (250)
T d1yb2a1          75 SYIIMRCG--LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISD  152 (250)
T ss_dssp             ------CC--CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCS
T ss_pred             HHHHHHcC--CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeeccccc
Confidence            44666677  788899999999999999999986 68899999999 888888876      45899999999988554 


Q ss_pred             -CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250          173 -PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI  217 (259)
Q Consensus       173 -~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~  217 (259)
                       .||.|++     +.++.  ..++.+++++|+|   ||++++..+.
T Consensus       153 ~~fD~V~l-----d~p~p--~~~l~~~~~~LKp---GG~lv~~~P~  188 (250)
T d1yb2a1         153 QMYDAVIA-----DIPDP--WNHVQKIASMMKP---GSVATFYLPN  188 (250)
T ss_dssp             CCEEEEEE-----CCSCG--GGSHHHHHHTEEE---EEEEEEEESS
T ss_pred             ceeeeeee-----cCCch--HHHHHHHHHhcCC---CceEEEEeCC
Confidence             5999876     34443  3679999999999   9998876543

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.24  E-value=4e-11  Score=95.42  Aligned_cols=97  Identities=19%  Similarity=0.251  Sum_probs=75.9

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC---CCC--CccEEeehhhh
Q 041250          115 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK---AIS--PAYAVLLKWIL  183 (259)
Q Consensus       115 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~---~~~--~~D~~~~~~vl  183 (259)
                      ...|||||||+|.++..+++.+|+..++++|+ +.++..|.+     ...++.++.+|..+   .++  .+|.+++.+.-
T Consensus        32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fPd  111 (204)
T d1yzha1          32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSD  111 (204)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCC
T ss_pred             CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcccccc
Confidence            35799999999999999999999999999998 666766544     56899999999876   234  47877755432


Q ss_pred             ccCChHH-------HHHHHHHHHHhcccCCCCcEEEEEe
Q 041250          184 LDWNDEE-------CVKILKKCKEAITRDGKKRKVIIKD  215 (259)
Q Consensus       184 h~~~d~~-------~~~il~~~~~~L~p~~~gg~lli~e  215 (259)
                       -|+...       ...+|+.+++.|+|   ||.|++..
T Consensus       112 -Pw~K~~h~krRl~~~~~l~~~~~~Lkp---gG~l~i~T  146 (204)
T d1yzha1         112 -PWPKKRHEKRRLTYKTFLDTFKRILPE---NGEIHFKT  146 (204)
T ss_dssp             -CCCSGGGGGGSTTSHHHHHHHHHHSCT---TCEEEEEE
T ss_pred             -cccchhhhhhhhhHHHHHHHHHHhCCC---CcEEEEEE
Confidence             354332       14789999999999   99997754

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.23  E-value=2.6e-11  Score=105.73  Aligned_cols=112  Identities=16%  Similarity=0.198  Sum_probs=85.4

Q ss_pred             HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc--------------CCCCeEE-EeC
Q 041250          102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES--------------DLVNLKY-VGG  165 (259)
Q Consensus       102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------------~~~ri~~-~~~  165 (259)
                      ..+++.++  +....+|||||||.|..+..+++.+|..+++|+|+ +.+++.|++              ....+.+ ..+
T Consensus       206 ~~Il~~l~--Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~  283 (406)
T d1u2za_         206 SDVYQQCQ--LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKK  283 (406)
T ss_dssp             HHHHHHTT--CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESS
T ss_pred             HHHHHHhC--CCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeee
Confidence            34555666  77788999999999999999999999778999999 888888765              1334444 456


Q ss_pred             CCCC-C-----CCCccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCC
Q 041250          166 DMFK-A-----ISPAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENR  221 (259)
Q Consensus       166 d~~~-~-----~~~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~  221 (259)
                      ++++ +     ++.+|++++.+.+| .  ++..+.|+++.+.|+|   ||+|++.+.+.+..
T Consensus       284 ~f~~~~~~d~~~~~adVV~inn~~f-~--~~l~~~L~ei~r~LKP---GGrIVs~~~~~~~~  339 (406)
T d1u2za_         284 SFVDNNRVAELIPQCDVILVNNFLF-D--EDLNKKVEKILQTAKV---GCKIISLKSLRSLT  339 (406)
T ss_dssp             CSTTCHHHHHHGGGCSEEEECCTTC-C--HHHHHHHHHHHTTCCT---TCEEEESSCSSCTT
T ss_pred             chhhccccccccccceEEEEecccC-c--hHHHHHHHHHHHhcCC---CcEEEEecccCCCc
Confidence            6665 2     23578888776543 3  3456889999999999   99999988766544

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.20  E-value=3.4e-11  Score=99.93  Aligned_cols=100  Identities=21%  Similarity=0.280  Sum_probs=79.3

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCCCC--CccEEeehhhh-
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAIS--PAYAVLLKWIL-  183 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~~--~~D~~~~~~vl-  183 (259)
                      ....+|||+|||+|..++.++..+|+.+++++|+ +.+++.|++     ...||+++.+|++++.+  +||+|+++--. 
T Consensus       107 ~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPYi  186 (274)
T d2b3ta1         107 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPYI  186 (274)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCCB
T ss_pred             ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeecccccccCCCceeEEEecchhh
Confidence            4467899999999999999999999999999999 889988887     44689999999999765  59999886322 


Q ss_pred             ------------ccCC----------hHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          184 ------------LDWN----------DEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       184 ------------h~~~----------d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                                  .+-|          -+...++++++.+.|+|   ||.+++ |.
T Consensus       187 ~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~---~G~l~l-Ei  237 (274)
T d2b3ta1         187 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVS---GGFLLL-EH  237 (274)
T ss_dssp             CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEE---EEEEEE-EC
T ss_pred             hhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCC---CCEEEE-EE
Confidence                        1111          02346789999999999   676554 54

>d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.19  E-value=1.6e-12  Score=90.17  Aligned_cols=69  Identities=17%  Similarity=0.121  Sum_probs=59.7

Q ss_pred             CHHHHHHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCC-CCCceeecCHhhhhhhc
Q 041250            1 MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNN-DEEQGYVLTNASKLLLK   71 (259)
Q Consensus         1 ~aL~~a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~-~~~~~y~~t~~~~~l~~   71 (259)
                      ++|++|+++|||++|.+  ||.|++|||+++|++++.+.|+|+++..++++..+ .+.+.|++|+.++.|..
T Consensus        22 ~~L~~aveL~ifd~L~~--gp~t~~eLA~~~g~~~~~l~rLlr~L~a~gll~~~~d~~~~~~~t~~g~lL~d   91 (92)
T d1qzza1          22 MALRVAATLRLVDHLLA--GADTLAGLADRTDTHPQALSRLVRHLTVVGVLEGGEKQGRPLRPTRLGMLLAD   91 (92)
T ss_dssp             HHHHHHHHTTHHHHHHT--TCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEECCCC-CCCCEECTTGGGGST
T ss_pred             HHHHHHHHcCchHHHhC--CCCCHHHHHHHHCcCchHHHHHHHHHHHCCCeeeecCCCceecccHHHHhccC
Confidence            48999999999999997  89999999999999999999999999999876322 23457999999998864

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.18  E-value=2.8e-11  Score=100.15  Aligned_cols=123  Identities=16%  Similarity=0.180  Sum_probs=94.6

Q ss_pred             CchHHHHHHHHHHhcchhh----hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeec-hHHHhhccc
Q 041250           82 ESKLNNFFNEAMASDARLA----TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES  155 (259)
Q Consensus        82 ~~~~~~~f~~~m~~~~~~~----~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~  155 (259)
                      .|...+ |...|...++..    +..++..++  +.+..+|||+|||+|.++..+++.. |+.+++++|. +++++.|++
T Consensus        70 ~p~~~d-~~~~~~r~~qiiypkd~~~Ii~~l~--i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~  146 (266)
T d1o54a_          70 IPSLID-EIMNMKRRTQIVYPKDSSFIAMMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAES  146 (266)
T ss_dssp             CCCHHH-HHHTCCC-CCCCCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHH
T ss_pred             CCCHHH-HHhhccCCccccchHHHHHHHHhhC--CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Confidence            444433 445565544432    445777788  8889999999999999999999875 8999999999 899998887


Q ss_pred             ------CCCCeEEEeCCCCCCCC--CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250          156 ------DLVNLKYVGGDMFKAIS--PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI  217 (259)
Q Consensus       156 ------~~~ri~~~~~d~~~~~~--~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~  217 (259)
                            ..+++.+..+|+...++  .+|.++     ++.++.  .++|+++.++|+|   ||++++..+.
T Consensus       147 ~~~~~g~~~~v~~~~~d~~~~~~~~~~D~V~-----~d~p~p--~~~l~~~~~~LKp---GG~lv~~~P~  206 (266)
T d1o54a_         147 NLTKWGLIERVTIKVRDISEGFDEKDVDALF-----LDVPDP--WNYIDKCWEALKG---GGRFATVCPT  206 (266)
T ss_dssp             HHHHTTCGGGEEEECCCGGGCCSCCSEEEEE-----ECCSCG--GGTHHHHHHHEEE---EEEEEEEESS
T ss_pred             HHHHhccccCcEEEeccccccccccceeeeE-----ecCCCH--HHHHHHHHhhcCC---CCEEEEEeCc
Confidence                  45899999999876444  477765     456664  3689999999999   9999887654

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=4.1e-12  Score=104.33  Aligned_cols=130  Identities=13%  Similarity=-0.005  Sum_probs=86.2

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCe---------------------------
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNL---------------------------  160 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri---------------------------  160 (259)
                      ....+|||||||+|.++..++.... .+++++|+ +.+++.|++    ....+                           
T Consensus        50 ~~g~~vLDlGcG~G~~~~~~~~~~~-~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (257)
T d2a14a1          50 LQGDTLIDIGSGPTIYQVLAACDSF-QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR  128 (257)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCHhHHHHhcccc-CcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence            4457899999999998876665532 26999999 888888765    11111                           


Q ss_pred             ---E-EEeCCC----CC-CCC--CccEEeehhhhccCCh--HHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchh
Q 041250          161 ---K-YVGGDM----FK-AIS--PAYAVLLKWILLDWND--EECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKS  227 (259)
Q Consensus       161 ---~-~~~~d~----~~-~~~--~~D~~~~~~vlh~~~d--~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~  227 (259)
                         . ....+.    .. +.+  .||+|++..++|+.+.  ++...+++++++.|+|   ||++++.+......-..   
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~Lkp---GG~li~~~~~~~~~~~~---  202 (257)
T d2a14a1         129 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKP---GGHLVTTVTLRLPSYMV---  202 (257)
T ss_dssp             HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEEEESSCCEEEE---
T ss_pred             hhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCC---CcEEEEEEeccccccee---
Confidence               1 111111    11 233  4999999999998753  5667899999999999   99998887642211000   


Q ss_pred             hhhhhhhhhhhhhccCccccCHHHHHHHHhcC
Q 041250          228 IETQLFFEMFMMVLLTGTERDEKEWAKIFADS  259 (259)
Q Consensus       228 ~~~~~~~d~~m~~~~~g~~rt~~e~~~ll~~a  259 (259)
                            .+.    .......|.++|+++|++|
T Consensus       203 ------~~~----~~~~~~~~~~~~~~~l~~a  224 (257)
T d2a14a1         203 ------GKR----EFSCVALEKGEVEQAVLDA  224 (257)
T ss_dssp             ------TTE----EEECCCCCHHHHHHHHHHT
T ss_pred             ------ccc----cccccCCCHHHHHHHHHHC
Confidence                  000    0122346889999998875

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=7.4e-11  Score=95.24  Aligned_cols=100  Identities=14%  Similarity=0.100  Sum_probs=79.7

Q ss_pred             HHHhcccccCCCCeEEEecCCchHHHHHHHHH-CCCCeEEEeec-hHHHhhccc----------CCCCeEEEeCCCCCCC
Q 041250          104 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKA-FPKLECTCFDL-PHVVNGLES----------DLVNLKYVGGDMFKAI  171 (259)
Q Consensus       104 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~----------~~~ri~~~~~d~~~~~  171 (259)
                      +++.+...+++..+|||||||+|..+..+++. .|..+++++|+ +++++.|++          ...++.++.+|.....
T Consensus        66 ~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~  145 (224)
T d1i1na_          66 ALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGY  145 (224)
T ss_dssp             HHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCC
T ss_pred             HHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeeccccc
Confidence            44444212567789999999999999998885 67889999998 888888865          2478999999998733


Q ss_pred             C---CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEE
Q 041250          172 S---PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIK  214 (259)
Q Consensus       172 ~---~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~  214 (259)
                      +   .||+|++...+++.+++        +.+.|+|   ||++++.
T Consensus       146 ~~~~~fD~I~~~~~~~~ip~~--------l~~~Lkp---GG~LV~p  180 (224)
T d1i1na_         146 AEEAPYDAIHVGAAAPVVPQA--------LIDQLKP---GGRLILP  180 (224)
T ss_dssp             GGGCCEEEEEECSBBSSCCHH--------HHHTEEE---EEEEEEE
T ss_pred             chhhhhhhhhhhcchhhcCHH--------HHhhcCC---CcEEEEE
Confidence            2   59999999999887753        5678999   9998873

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=3.4e-11  Score=99.61  Aligned_cols=130  Identities=15%  Similarity=0.094  Sum_probs=87.3

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCC----------------------------
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVN----------------------------  159 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~r----------------------------  159 (259)
                      .++.+|||||||+|.+....+.+... +++++|. +.+++.+++    ....                            
T Consensus        53 ~~g~~vLDiGcG~g~~~~~~~~~~~~-~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (263)
T d2g72a1          53 VSGRTLIDIGSGPTVYQLLSACSHFE-DITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR  131 (263)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGGGGCS-EEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred             CCCcEEEEeccCCCHHHHHHhcccCC-eEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhh
Confidence            45689999999999887655544433 7999999 888887764    1111                            


Q ss_pred             ---eEEEeCCCCCC-------C-C-CccEEeehhhhccCC--hHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCc
Q 041250          160 ---LKYVGGDMFKA-------I-S-PAYAVLLKWILLDWN--DEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDY  225 (259)
Q Consensus       160 ---i~~~~~d~~~~-------~-~-~~D~~~~~~vlh~~~--d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~  225 (259)
                         -.....|..++       . + .||+|++..+||+.+  .++..++++++++.|||   ||.+++.+......-.  
T Consensus       132 ~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkP---GG~li~~~~~~~~~~~--  206 (263)
T d2g72a1         132 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRP---GGHLLLIGALEESWYL--  206 (263)
T ss_dssp             HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEEEEESCCEEE--
T ss_pred             hhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCC---CCEEEEecccCCcccc--
Confidence               12344566542       1 1 489999999999875  24578899999999999   8998888764321100  


Q ss_pred             hhhhhhhhhhhhhhhccCccccCHHHHHHHHhcC
Q 041250          226 KSIETQLFFEMFMMVLLTGTERDEKEWAKIFADS  259 (259)
Q Consensus       226 ~~~~~~~~~d~~m~~~~~g~~rt~~e~~~ll~~a  259 (259)
                              .....   ......|.++++++|++|
T Consensus       207 --------~~~~~---~~~~~~t~e~v~~~l~~a  229 (263)
T d2g72a1         207 --------AGEAR---LTVVPVSEEEVREALVRS  229 (263)
T ss_dssp             --------ETTEE---EECCCCCHHHHHHHHHHT
T ss_pred             --------cCCcc---cccCCCCHHHHHHHHHHC
Confidence                    00000   012346889999998764

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.10  E-value=8.5e-11  Score=99.72  Aligned_cols=96  Identities=14%  Similarity=0.097  Sum_probs=75.4

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhccc------CCCCeEEEeCCCCC-CCC--CccEEeehhhh
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES------DLVNLKYVGGDMFK-AIS--PAYAVLLKWIL  183 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~d~~~-~~~--~~D~~~~~~vl  183 (259)
                      .+..+|||||||+|.++..++++.+ -+++++|.++....+++      ..++|+++.+|..+ +.+  .+|+++.....
T Consensus        32 ~~~~~VLDiGcG~G~ls~~aa~~Ga-~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~  110 (316)
T d1oria_          32 FKDKVVLDVGSGTGILCMFAAKAGA-RKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG  110 (316)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTTC-SEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred             CCcCEEEEEecCCcHHHHHHHHhCC-CEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeee
Confidence            3467899999999999998888744 37999999554444433      57899999999988 555  59999887777


Q ss_pred             ccCChH-HHHHHHHHHHHhcccCCCCcEEE
Q 041250          184 LDWNDE-ECVKILKKCKEAITRDGKKRKVI  212 (259)
Q Consensus       184 h~~~d~-~~~~il~~~~~~L~p~~~gg~ll  212 (259)
                      |....+ ....++..+.+.|+|   ||+++
T Consensus       111 ~~l~~e~~~~~~l~~~~r~Lkp---~G~ii  137 (316)
T d1oria_         111 YCLFYESMLNTVLHARDKWLAP---DGLIF  137 (316)
T ss_dssp             BTBTBTCCHHHHHHHHHHHEEE---EEEEE
T ss_pred             eeeccHHHHHHHHHHHHhcCCC---CeEEE
Confidence            665443 456799999999999   88876

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.07  E-value=1.7e-10  Score=98.26  Aligned_cols=96  Identities=13%  Similarity=0.102  Sum_probs=75.2

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhccc------CCCCeEEEeCCCCC-CCC--CccEEeehhhh
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES------DLVNLKYVGGDMFK-AIS--PAYAVLLKWIL  183 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~d~~~-~~~--~~D~~~~~~vl  183 (259)
                      .+..+|||||||+|.++..++++.. -+++++|.++++..+++      ..++++++.+|+.+ +.|  .+|+|+...+.
T Consensus        37 ~~~~~VLDlGcGtG~ls~~aa~~Ga-~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~  115 (328)
T d1g6q1_          37 FKDKIVLDVGCGTGILSMFAAKHGA-KHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG  115 (328)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTCC-SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred             CCcCEEEEeCCCCCHHHHHHHHhCC-CEEEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecc
Confidence            3467999999999999988877643 48999999767666654      57899999999988 655  59999987766


Q ss_pred             ccCCh-HHHHHHHHHHHHhcccCCCCcEEE
Q 041250          184 LDWND-EECVKILKKCKEAITRDGKKRKVI  212 (259)
Q Consensus       184 h~~~d-~~~~~il~~~~~~L~p~~~gg~ll  212 (259)
                      |.... .....++....+.|+|   ||+++
T Consensus       116 ~~~~~e~~~~~~~~a~~r~Lkp---gG~ii  142 (328)
T d1g6q1_         116 YFLLYESMMDTVLYARDHYLVE---GGLIF  142 (328)
T ss_dssp             TTBSTTCCHHHHHHHHHHHEEE---EEEEE
T ss_pred             eeeccchhHHHHHHHHHhccCC---CeEEE
Confidence            65443 3345788888899999   88764

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=1.9e-10  Score=97.61  Aligned_cols=129  Identities=14%  Similarity=0.134  Sum_probs=95.7

Q ss_pred             chhhcCchHHHHHHHHHHhcchhh----hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHH-CCCCeEEEeec-hHHH
Q 041250           77 EYAGDESKLNNFFNEAMASDARLA----TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKA-FPKLECTCFDL-PHVV  150 (259)
Q Consensus        77 ~~l~~~~~~~~~f~~~m~~~~~~~----~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~  150 (259)
                      .|+--.|.. ..|...|...++..    +..++..++  +..+.+|||+|||+|.++..|++. .|+.+++.+|+ ++++
T Consensus        60 ~~~v~~Pt~-~d~~~~~~r~tqiiypkD~~~Il~~l~--i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~  136 (324)
T d2b25a1          60 QYMLRRPAL-EDYVVLMKRGTAITFPKDINMILSMMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHH  136 (324)
T ss_dssp             EEEEECCCH-HHHHHHSCCSSCCCCHHHHHHHHHHHT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHH
T ss_pred             EEEEeCCCH-HHHhhccCCCCcccccccHHHHHHHhC--CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHH
Confidence            333334443 34556676655532    456777888  888999999999999999999986 68999999999 8888


Q ss_pred             hhccc----------------CCCCeEEEeCCCCCC---CC--CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCc
Q 041250          151 NGLES----------------DLVNLKYVGGDMFKA---IS--PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKR  209 (259)
Q Consensus       151 ~~a~~----------------~~~ri~~~~~d~~~~---~~--~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg  209 (259)
                      +.|++                ..+++.+..+|+.+.   ++  .||.|++     |.++.  ..++.+++++|+|   ||
T Consensus       137 ~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~~~~~~fD~V~L-----D~p~P--~~~l~~~~~~LKp---GG  206 (324)
T d2b25a1         137 DLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVAL-----DMLNP--HVTLPVFYPHLKH---GG  206 (324)
T ss_dssp             HHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-------EEEEEE-----CSSST--TTTHHHHGGGEEE---EE
T ss_pred             HHHHHHHHHhhhhhhhhhhhccccceeEEecchhhcccccCCCCcceEee-----cCcCH--HHHHHHHHHhccC---CC
Confidence            88765                257999999998762   23  4898876     44442  2479999999999   99


Q ss_pred             EEEEEeeee
Q 041250          210 KVIIKDMIK  218 (259)
Q Consensus       210 ~lli~e~~~  218 (259)
                      ++++.-+..
T Consensus       207 ~lv~~~P~i  215 (324)
T d2b25a1         207 VCAVYVVNI  215 (324)
T ss_dssp             EEEEEESSH
T ss_pred             EEEEEeCCH
Confidence            988866543

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.06  E-value=2.3e-10  Score=90.16  Aligned_cols=99  Identities=12%  Similarity=0.189  Sum_probs=75.1

Q ss_pred             CCCCeEEEecCCchHHH----HHHHHH----CCCCeEEEeec-hHHHhhccc----------------------------
Q 041250          113 EGLNSLVDVGGGTGTAA----KAIAKA----FPKLECTCFDL-PHVVNGLES----------------------------  155 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~----~~l~~~----~p~~~~~~~D~-~~~~~~a~~----------------------------  155 (259)
                      .+..+|+++|||+|.-.    +.+.+.    .+++++++.|+ +.+++.|++                            
T Consensus        23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~  102 (193)
T d1af7a2          23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE  102 (193)
T ss_dssp             CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred             CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence            34579999999999844    333433    23457999999 888887764                            


Q ss_pred             --------CCCCeEEEeCCCCCC-C---CCccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEE
Q 041250          156 --------DLVNLKYVGGDMFKA-I---SPAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIK  214 (259)
Q Consensus       156 --------~~~ri~~~~~d~~~~-~---~~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~  214 (259)
                              ...++.+...+...+ .   .++|+|+++++|++++++...+++++++++|+|   ||.|++-
T Consensus       103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~p---GG~L~lG  170 (193)
T d1af7a2         103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKP---DGLLFAG  170 (193)
T ss_dssp             SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEE---EEEEEEC
T ss_pred             ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCC---CcEEEEe
Confidence                    012456666777662 2   259999999999999999999999999999999   8876665

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.06  E-value=3.2e-10  Score=91.23  Aligned_cols=96  Identities=16%  Similarity=0.147  Sum_probs=78.6

Q ss_pred             HHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEeCCCCCCCC---CccE
Q 041250          104 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFKAIS---PAYA  176 (259)
Q Consensus       104 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~~~~---~~D~  176 (259)
                      +++.++  +.+..+|||||||+|.++..+++..  .+++.+|. +..++.|++   ...++.++.+|....++   +||.
T Consensus        62 ml~~L~--l~~g~~VLdIG~GsGy~ta~La~l~--~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~pfD~  137 (224)
T d1vbfa_          62 MLDELD--LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDR  137 (224)
T ss_dssp             HHHHTT--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEE
T ss_pred             HHHHhh--hcccceEEEecCCCCHHHHHHHHHh--cccccccccHHHHHHHHHHHhcccccccccCchhhcchhhhhHHH
Confidence            566667  7888999999999999999888874  57999998 888888877   56899999999887433   4999


Q ss_pred             EeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEE
Q 041250          177 VLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIK  214 (259)
Q Consensus       177 ~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~  214 (259)
                      |++...+++.++.        +.+.|+|   ||+|++.
T Consensus       138 Iiv~~a~~~ip~~--------l~~qLk~---GGrLV~p  164 (224)
T d1vbfa_         138 VVVWATAPTLLCK--------PYEQLKE---GGIMILP  164 (224)
T ss_dssp             EEESSBBSSCCHH--------HHHTEEE---EEEEEEE
T ss_pred             HHhhcchhhhhHH--------HHHhcCC---CCEEEEE
Confidence            9999888877653        4567999   9998773

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=5.3e-10  Score=94.45  Aligned_cols=97  Identities=15%  Similarity=0.117  Sum_probs=75.0

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhccc------CCCCeEEEeCCCCC-CCC--CccEEeehhh
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES------DLVNLKYVGGDMFK-AIS--PAYAVLLKWI  182 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~d~~~-~~~--~~D~~~~~~v  182 (259)
                      ..+..+|||||||+|.++..++++.+ -+++++|..+....+++      ..+++.++.+|..+ +.+  .+|+|+...+
T Consensus        33 ~~~~~~VLDiGcG~G~lsl~aa~~Ga-~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~  111 (311)
T d2fyta1          33 IFKDKVVLDVGCGTGILSMFAAKAGA-KKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWM  111 (311)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHTTC-SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCC
T ss_pred             cCCcCEEEEECCCCCHHHHHHHHcCC-CEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeee
Confidence            44568999999999999999998754 48999999444333332      67899999999988 554  5999998877


Q ss_pred             hccCChH-HHHHHHHHHHHhcccCCCCcEEE
Q 041250          183 LLDWNDE-ECVKILKKCKEAITRDGKKRKVI  212 (259)
Q Consensus       183 lh~~~d~-~~~~il~~~~~~L~p~~~gg~ll  212 (259)
                      .|....+ ....++....+.|+|   ||+++
T Consensus       112 ~~~~~~e~~~~~~~~a~~~~Lkp---~G~ii  139 (311)
T d2fyta1         112 GYFLLFESMLDSVLYAKNKYLAK---GGSVY  139 (311)
T ss_dssp             BTTBTTTCHHHHHHHHHHHHEEE---EEEEE
T ss_pred             eeecccccccHHHHHHHHhcCCC---CcEEe
Confidence            7766554 345677777889999   88876

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.99  E-value=1.1e-09  Score=88.26  Aligned_cols=106  Identities=13%  Similarity=0.108  Sum_probs=80.9

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeec-hHHHhhccc---CCCCeEEEeCCCCCC--CC----CccEEeeh
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFKA--IS----PAYAVLLK  180 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~~--~~----~~D~~~~~  180 (259)
                      +.+..+|||+|||+|..+..+++.. |+.+++++|+ |.+++.+++   ...++..+..|...+  .+    .+|+++. 
T Consensus        71 i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~~-  149 (227)
T d1g8aa_          71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFE-  149 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEE-
T ss_pred             cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEEE-
Confidence            6778999999999999999999975 8899999999 888887776   557788888887662  21    3666543 


Q ss_pred             hhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCC
Q 041250          181 WILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKD  224 (259)
Q Consensus       181 ~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~  224 (259)
                       .+++.  ++...+++++++.|+|   ||+++|+......+...
T Consensus       150 -d~~~~--~~~~~~l~~~~~~Lkp---gG~lvi~~ka~~~~~~~  187 (227)
T d1g8aa_         150 -DVAQP--TQAKILIDNAEVYLKR---GGYGMIAVKSRSIDVTK  187 (227)
T ss_dssp             -CCCST--THHHHHHHHHHHHEEE---EEEEEEEEEGGGTCTTS
T ss_pred             -Ecccc--chHHHHHHHHHHhccc---CCeEEEEEECCccCCCC
Confidence             23333  3356789999999999   99998887655444433

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.99  E-value=7.4e-10  Score=87.04  Aligned_cols=117  Identities=16%  Similarity=0.170  Sum_probs=90.4

Q ss_pred             hhHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCC-C---
Q 041250          100 ATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-A---  170 (259)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~---  170 (259)
                      ....+++.+.  ......+||++||+|.++..+++++|+.+++++|. |++++.+++    ..+|+.++.++|.+ .   
T Consensus        11 ll~evi~~l~--~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~   88 (192)
T d1m6ya2          11 MVREVIEFLK--PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLL   88 (192)
T ss_dssp             THHHHHHHHC--CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHH
T ss_pred             HHHHHHHhhC--CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHH
Confidence            3456677766  66778999999999999999999999999999999 999999887    46899999999975 1   


Q ss_pred             --C--CCccEEeeh-----hhhccCC--hHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCC
Q 041250          171 --I--SPAYAVLLK-----WILLDWN--DEECVKILKKCKEAITRDGKKRKVIIKDMIKENR  221 (259)
Q Consensus       171 --~--~~~D~~~~~-----~vlh~~~--d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~  221 (259)
                        .  .++|.|++-     +-+-.-.  -....+.|..+.+.|+|   ||+++|+.+...++
T Consensus        89 ~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~---gG~l~ii~f~s~Ed  147 (192)
T d1m6ya2          89 KTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNP---GGRIVVISFHSLED  147 (192)
T ss_dssp             HHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEE---EEEEEEEESSHHHH
T ss_pred             HHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCC---CCeeeeeccccHHH
Confidence              2  257777653     2221111  13345788999999999   99999998765544

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.88  E-value=2.6e-09  Score=85.29  Aligned_cols=97  Identities=20%  Similarity=0.254  Sum_probs=78.4

Q ss_pred             HHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCCCC---Cc
Q 041250          104 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAIS---PA  174 (259)
Q Consensus       104 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~~---~~  174 (259)
                      +++.++  +.+..+|||||||+|..+..+++.. +.+++.+|. +++++.+++     ..+++.++.+|.++.++   .|
T Consensus        70 ml~~L~--l~~g~~VLeIGsGsGY~taila~l~-g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~pf  146 (215)
T d1jg1a_          70 MLEIAN--LKPGMNILEVGTGSGWNAALISEIV-KTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPY  146 (215)
T ss_dssp             HHHHHT--CCTTCCEEEECCTTSHHHHHHHHHH-CSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCE
T ss_pred             HHHhhc--cCccceEEEecCCCChhHHHHHHhh-CceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccCcc
Confidence            455666  7788899999999999999888764 356888888 888888876     56999999999988433   59


Q ss_pred             cEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEE
Q 041250          175 YAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIK  214 (259)
Q Consensus       175 D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~  214 (259)
                      |.|++...++..|+.        +.+.|+|   ||++++.
T Consensus       147 D~Iiv~~a~~~ip~~--------l~~qL~~---gGrLv~p  175 (215)
T d1jg1a_         147 DVIIVTAGAPKIPEP--------LIEQLKI---GGKLIIP  175 (215)
T ss_dssp             EEEEECSBBSSCCHH--------HHHTEEE---EEEEEEE
T ss_pred             eeEEeecccccCCHH--------HHHhcCC---CCEEEEE
Confidence            999999888877753        4566899   8988764

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.86  E-value=4e-09  Score=84.72  Aligned_cols=100  Identities=17%  Similarity=0.188  Sum_probs=77.5

Q ss_pred             HHHhcccccCCCCeEEEecCCchHHHHHHHHH------CCCCeEEEeec-hHHHhhccc----------CCCCeEEEeCC
Q 041250          104 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKA------FPKLECTCFDL-PHVVNGLES----------DLVNLKYVGGD  166 (259)
Q Consensus       104 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~------~p~~~~~~~D~-~~~~~~a~~----------~~~ri~~~~~d  166 (259)
                      +++.+...+.+..+|||||||+|..+..+++.      ++..+++.+|. ++.++.|++          ...++.+..+|
T Consensus        70 ~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d  149 (223)
T d1r18a_          70 ALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGD  149 (223)
T ss_dssp             HHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESC
T ss_pred             HHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEecc
Confidence            44444211667889999999999999888775      35568999998 888887765          24689999999


Q ss_pred             CCCCCC---CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEE
Q 041250          167 MFKAIS---PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIK  214 (259)
Q Consensus       167 ~~~~~~---~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~  214 (259)
                      ..+..+   .||.|++...++..|+.        +.+.|+|   ||++++.
T Consensus       150 ~~~~~~~~~~fD~Iiv~~a~~~~p~~--------l~~~Lk~---gG~lV~p  189 (223)
T d1r18a_         150 GRKGYPPNAPYNAIHVGAAAPDTPTE--------LINQLAS---GGRLIVP  189 (223)
T ss_dssp             GGGCCGGGCSEEEEEECSCBSSCCHH--------HHHTEEE---EEEEEEE
T ss_pred             cccccccccceeeEEEEeechhchHH--------HHHhcCC---CcEEEEE
Confidence            988333   59999999998877752        4678999   8998774

>d1fp1d1 a.4.5.29 (D:19-128) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.78  E-value=4.3e-10  Score=79.52  Aligned_cols=73  Identities=25%  Similarity=0.326  Sum_probs=56.0

Q ss_pred             CHHHHHHHcCcchhhhcCCCC---CCHHHHHHHcCC---Ccc---ccccceeccccccCCCC---C-CC---CceeecCH
Q 041250            1 MTLKCAFQLGIPDIINKHGKP---MTLNELVSALTI---NLS---KTQCFFAQQKLVSSGNN---N-DE---EQGYVLTN   64 (259)
Q Consensus         1 ~aL~~a~~l~lf~~L~~~~~~---~t~~elA~~~~~---~~~---~l~~ll~~~~~~~~~~~---~-~~---~~~y~~t~   64 (259)
                      |+|++|+||||||+|...|++   +|+.|||.++.+   ++.   .+.|+||.+...+++..   . .+   ...|.+||
T Consensus        21 MaLk~AieLgI~diI~~~G~~~~~ls~~ela~~lp~~~~~p~~~~~L~RiLRlLas~~vf~~~~~~~~~g~~e~~Y~Ltp  100 (110)
T d1fp1d1          21 AVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSM  100 (110)
T ss_dssp             HHHHHHHHTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECT
T ss_pred             HHHHHHHHcCCHHHHHHcCCCCCCCCHHHHHHhCCCCCCCccHHHHHHHHHHHHHHcCccccccccCCCCCeeeEEecch
Confidence            799999999999999975444   799999999876   333   48888888876654421   1 12   22699999


Q ss_pred             hhhhhhcCC
Q 041250           65 ASKLLLKDN   73 (259)
Q Consensus        65 ~~~~l~~~~   73 (259)
                      .+++|+++.
T Consensus       101 vsk~Lv~de  109 (110)
T d1fp1d1         101 VGKYLVPDE  109 (110)
T ss_dssp             TGGGGSTTC
T ss_pred             hhHhhcCCC
Confidence            999999874

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.77  E-value=6.3e-09  Score=85.47  Aligned_cols=99  Identities=14%  Similarity=0.082  Sum_probs=78.1

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCCCC--CccEEeehhh
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAIS--PAYAVLLKWI  182 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~--~~D~~~~~~v  182 (259)
                      .....+|||+|||+|.+++.+++. +..+++++|+ |.+++.+++      ..++|+++.+|.++-.+  .||.|++...
T Consensus       105 ~~~g~~VlD~~aG~G~~~l~~a~~-~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~~D~Ii~~~p  183 (260)
T d2frna1         105 AKPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV  183 (260)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred             cCCccEEEECcceEcHHHHHHHHh-CCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccCCCCCEEEECCC
Confidence            355789999999999999999987 4569999999 888888876      56889999999988333  5998887532


Q ss_pred             hccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecC
Q 041250          183 LLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKEN  220 (259)
Q Consensus       183 lh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~  220 (259)
                      -      .+...+..+.+.++|   ||.|.+.+.+..+
T Consensus       184 ~------~~~~~l~~a~~~l~~---gG~lh~~~~~~~~  212 (260)
T d2frna1         184 V------RTHEFIPKALSIAKD---GAIIHYHNTVPEK  212 (260)
T ss_dssp             S------SGGGGHHHHHHHEEE---EEEEEEEEEEEGG
T ss_pred             C------chHHHHHHHHhhcCC---CCEEEEEeccccc
Confidence            1      123578888899999   8988887766444

>d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.77  E-value=6e-10  Score=78.51  Aligned_cols=72  Identities=24%  Similarity=0.276  Sum_probs=56.4

Q ss_pred             CHHHHHHHcCcchhhhcCC--CCCCHHHHHHHcCCC----ccccccceeccccccCCCC---CCC----CceeecCHhhh
Q 041250            1 MTLKCAFQLGIPDIINKHG--KPMTLNELVSALTIN----LSKTQCFFAQQKLVSSGNN---NDE----EQGYVLTNASK   67 (259)
Q Consensus         1 ~aL~~a~~l~lf~~L~~~~--~~~t~~elA~~~~~~----~~~l~~ll~~~~~~~~~~~---~~~----~~~y~~t~~~~   67 (259)
                      |+|++|++|||||+|+..|  .+.|..|||.++..+    +..+.|+||.+...+++..   ..+    ...|.+||.|+
T Consensus        22 maLk~AieLgI~DiI~~~G~~~~ls~~eia~~l~~~~p~~~~~L~RilR~Las~~vf~~~~~~~~dg~~~~~Y~LTpvsk  101 (107)
T d1kyza1          22 MILKSALELDLLEIIAKAGPGAQISPIEIASQLPTTNPDAPVMLDRMLRLLACYIILTCSVRTQQDGKVQRLYGLATVAK  101 (107)
T ss_dssp             HHHHHHHHTTHHHHHHTTCTTCCBCHHHHHHTSSCCCTTHHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECHHHH
T ss_pred             HHHHHHHHcCCHHHHHHcCCCCCCCHHHHHHhcCCCCCcchHHHHHHHHHHHhcCceEEeeecCCCCCeeeEEecchhHH
Confidence            7899999999999998743  467999999999884    3358899998887665421   112    23699999999


Q ss_pred             hhhcC
Q 041250           68 LLLKD   72 (259)
Q Consensus        68 ~l~~~   72 (259)
                      +|+++
T Consensus       102 ~Lv~d  106 (107)
T d1kyza1         102 YLVKN  106 (107)
T ss_dssp             HHSCC
T ss_pred             hhcCC
Confidence            99876

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.72  E-value=1e-08  Score=80.52  Aligned_cols=68  Identities=16%  Similarity=0.212  Sum_probs=57.3

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCCCCCCccEEeehhhh
Q 041250          115 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWIL  183 (259)
Q Consensus       115 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~~~~D~~~~~~vl  183 (259)
                      +.+|||+|||+|.+++.++...+. +++++|+ +.+++.|++...++.++.+|+.+...+||+|+++-.+
T Consensus        49 Gk~VLDlGcGtG~l~i~a~~~ga~-~V~~vDid~~a~~~ar~N~~~~~~~~~D~~~l~~~fD~Vi~NPPf  117 (197)
T d1ne2a_          49 GRSVIDAGTGNGILACGSYLLGAE-SVTAFDIDPDAIETAKRNCGGVNFMVADVSEISGKYDTWIMNPPF  117 (197)
T ss_dssp             TSEEEEETCTTCHHHHHHHHTTBS-EEEEEESCHHHHHHHHHHCTTSEEEECCGGGCCCCEEEEEECCCC
T ss_pred             CCEEEEeCCCCcHHHHHHHHcCCC-cccccccCHHHHHHHHHccccccEEEEehhhcCCcceEEEeCccc
Confidence            579999999999999888877544 7999999 8999999887789999999998744469999987443

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.71  E-value=1.3e-08  Score=76.83  Aligned_cols=95  Identities=8%  Similarity=0.023  Sum_probs=70.4

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC--CC--CCccEEeehhh
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK--AI--SPAYAVLLKWI  182 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~--~~--~~~D~~~~~~v  182 (259)
                      ...+|||+|||+|.++++.+.+... +++.+|. +.+++.+++      ..++++++.+|.++  +.  .+||+|++...
T Consensus        14 ~g~~vlDl~~GtG~~~iea~~rga~-~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPP   92 (152)
T d2esra1          14 NGGRVLDLFAGSGGLAIEAVSRGMS-AAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP   92 (152)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHTTCC-EEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS
T ss_pred             CCCeEEEcCCccCHHHHHHHHhCcc-eeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechh
Confidence            3679999999999999999888654 8999999 888887776      45789999999876  22  35999988643


Q ss_pred             hccCChHHHHHHHHHHHH--hcccCCCCcEEEEEee
Q 041250          183 LLDWNDEECVKILKKCKE--AITRDGKKRKVIIKDM  216 (259)
Q Consensus       183 lh~~~d~~~~~il~~~~~--~L~p~~~gg~lli~e~  216 (259)
                      ..   ......++..+..  .|+|   +|. +++|.
T Consensus        93 y~---~~~~~~~l~~i~~~~~L~~---~g~-iiiE~  121 (152)
T d2esra1          93 YA---KETIVATIEALAAKNLLSE---QVM-VVCET  121 (152)
T ss_dssp             SH---HHHHHHHHHHHHHTTCEEE---EEE-EEEEE
T ss_pred             hc---cchHHHHHHHHHHCCCcCC---CeE-EEEEe
Confidence            22   2334456666654  5888   555 55564

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.56  E-value=6.5e-08  Score=81.84  Aligned_cols=102  Identities=15%  Similarity=0.064  Sum_probs=76.8

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCC---C----CCccEE
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKA---I----SPAYAV  177 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~---~----~~~D~~  177 (259)
                      .++..+|||+|||+|.+++.+++... .+++.+|+ +.+++.+++      ..++++++.+|.++.   .    ..||+|
T Consensus       143 ~~~g~~VLDl~~g~G~~si~~a~~ga-~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~V  221 (324)
T d2as0a2         143 VQPGDRVLDVFTYTGGFAIHAAIAGA-DEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIV  221 (324)
T ss_dssp             CCTTCEEEETTCTTTHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             cCCCCeeecccCcccchhhhhhhcCC-cEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCch
Confidence            45578999999999999999988753 38999999 888888876      457999999999861   1    259999


Q ss_pred             eehhhhc---cCChHH----HHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250          178 LLKWILL---DWNDEE----CVKILKKCKEAITRDGKKRKVIIKDMI  217 (259)
Q Consensus       178 ~~~~vlh---~~~d~~----~~~il~~~~~~L~p~~~gg~lli~e~~  217 (259)
                      ++.-...   .-....    -.++++.+.+.|+|   ||.|+.+...
T Consensus       222 i~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~p---GG~lv~~s~s  265 (324)
T d2as0a2         222 VLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKD---GGILVTCSCS  265 (324)
T ss_dssp             EECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEE---EEEEEEEECC
T ss_pred             hcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCC---CcEEEEEeCC
Confidence            9854321   111111    24578888999999   8988887654

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.52  E-value=1.5e-07  Score=74.02  Aligned_cols=69  Identities=20%  Similarity=0.146  Sum_probs=56.3

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCCCCCCccEEeehhhhc
Q 041250          115 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFKAISPAYAVLLKWILL  184 (259)
Q Consensus       115 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~~~~~~D~~~~~~vlh  184 (259)
                      +.+|||+|||+|.++++++.+.+ .+++++|+ +.+++.+++    ...+++++.+|..+...+||+|++.--.+
T Consensus        47 g~~vLDlg~GtG~l~i~a~~~g~-~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~~~~fD~Vi~nPP~~  120 (201)
T d1wy7a1          47 GKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPFG  120 (201)
T ss_dssp             TCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCCS
T ss_pred             CCEEEECcCcchHHHHHHHHcCC-CEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhhCCcCcEEEEcCccc
Confidence            57899999999999999877643 58999999 888887776    56788999999877545699998875544

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=2.3e-07  Score=75.47  Aligned_cols=73  Identities=11%  Similarity=-0.018  Sum_probs=59.7

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCC----C---C--CccE
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKA----I---S--PAYA  176 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~----~---~--~~D~  176 (259)
                      ....++||+|||+|..+..++++.|+.+++++|+ +.+++.|++      ..+|+.+...+..+.    .   .  .||+
T Consensus        60 ~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~  139 (250)
T d2h00a1          60 STLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF  139 (250)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred             cccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeE
Confidence            3456899999999999999999999999999999 899999887      678999987654431    1   1  4999


Q ss_pred             Eeehhhhcc
Q 041250          177 VLLKWILLD  185 (259)
Q Consensus       177 ~~~~~vlh~  185 (259)
                      ++++--.+.
T Consensus       140 ivsNPPY~~  148 (250)
T d2h00a1         140 CMCNPPFFA  148 (250)
T ss_dssp             EEECCCCC-
T ss_pred             EEecCcccc
Confidence            998876664

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.51  E-value=4.7e-08  Score=77.81  Aligned_cols=101  Identities=12%  Similarity=0.070  Sum_probs=74.8

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCCC---------CCc
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAI---------SPA  174 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~---------~~~  174 (259)
                      ..++.+|||||||+|.-+..+++..| +.+++.+|. ++..+.|++      ..++|+++.||..+-.         ..+
T Consensus        54 ~~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~  133 (214)
T d2cl5a1          54 EYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL  133 (214)
T ss_dssp             HHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCE
T ss_pred             hhCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhccccccc
Confidence            34578999999999999999999875 679999999 888888876      5689999999987621         248


Q ss_pred             cEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250          175 YAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKE  219 (259)
Q Consensus       175 D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~  219 (259)
                      |++++-+   +.........+.+..+.|+|   || ++|+|.++-
T Consensus       134 D~ifiD~---~~~~~~~~~~l~~~~~lLkp---GG-vIv~Ddvl~  171 (214)
T d2cl5a1         134 DMVFLDH---WKDRYLPDTLLLEKCGLLRK---GT-VLLADNVIV  171 (214)
T ss_dssp             EEEEECS---CGGGHHHHHHHHHHTTCEEE---EE-EEEESCCCC
T ss_pred             ceeeecc---cccccccHHHHHHHhCccCC---Cc-EEEEeCcCC
Confidence            9888762   22222223346677788999   55 566666554

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=98.49  E-value=1e-07  Score=73.08  Aligned_cols=96  Identities=10%  Similarity=0.050  Sum_probs=64.5

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-----CCCCccEEee
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-----AISPAYAVLL  179 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-----~~~~~D~~~~  179 (259)
                      .....+|||+|||+|.++++++.+  +.+++.+|. +.+++.+++      ...++....+|.+.     ....||+|++
T Consensus        39 ~~~g~~vLDl~~G~G~~~i~a~~~--ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~  116 (171)
T d1ws6a1          39 YPRRGRFLDPFAGSGAVGLEAASE--GWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFM  116 (171)
T ss_dssp             CTTCCEEEEETCSSCHHHHHHHHT--TCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEE
T ss_pred             ccCCCeEEEeccccchhhhhhhhc--cchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEE
Confidence            456779999999999999998887  468899999 888888776      44566666666543     1225999988


Q ss_pred             hhhhccCCh-HHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          180 KWILLDWND-EECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       180 ~~vlh~~~d-~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      .--.+ .+. +....++.  ...|+|   || ++++|.
T Consensus       117 DPPY~-~~~~~~l~~l~~--~~ll~~---~g-~ivie~  147 (171)
T d1ws6a1         117 APPYA-MDLAALFGELLA--SGLVEA---GG-LYVLQH  147 (171)
T ss_dssp             CCCTT-SCTTHHHHHHHH--HTCEEE---EE-EEEEEE
T ss_pred             ccccc-cCHHHHHHHHHH--cCCcCC---Ce-EEEEEe
Confidence            65433 222 22223332  246888   66 455554

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.45  E-value=1e-07  Score=80.01  Aligned_cols=100  Identities=14%  Similarity=0.112  Sum_probs=76.5

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----------CCCCeEEEeCCCCC---CCC-CccE
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----------DLVNLKYVGGDMFK---AIS-PAYA  176 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~ri~~~~~d~~~---~~~-~~D~  176 (259)
                      .+++.+||.||+|.|..+.++++..|..+++++|+ |.+++.+++          ..+|++++.+|.++   ..+ +||+
T Consensus        75 ~~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDv  154 (312)
T d1uira_          75 HPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDV  154 (312)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEE
T ss_pred             CCCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccE
Confidence            35678999999999999999998888889999999 899988876          35799999999987   223 5999


Q ss_pred             Eeehhh--hcc-CChH--HHHHHHHHHHHhcccCCCCcEEEEE
Q 041250          177 VLLKWI--LLD-WNDE--ECVKILKKCKEAITRDGKKRKVIIK  214 (259)
Q Consensus       177 ~~~~~v--lh~-~~d~--~~~~il~~~~~~L~p~~~gg~lli~  214 (259)
                      |++-..  ... -+..  -..+.++.+++.|+|   ||.+++.
T Consensus       155 Ii~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p---~Gvlv~~  194 (312)
T d1uira_         155 VIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNP---GGVMGMQ  194 (312)
T ss_dssp             EEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEE---EEEEEEE
T ss_pred             EEEeCCCcccccchhhhhhhHHHHHHHHHhcCC---CceEEEe
Confidence            985431  111 1111  124689999999999   7766554

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=3.3e-07  Score=72.96  Aligned_cols=98  Identities=12%  Similarity=0.117  Sum_probs=76.1

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCC---------CCCc
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKA---------ISPA  174 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~---------~~~~  174 (259)
                      ..++++||+||+|+|.-+..+++..| +.+++.+|. ++..+.|++      ..++++++.||..+.         ...|
T Consensus        57 ~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~f  136 (219)
T d2avda1          57 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF  136 (219)
T ss_dssp             HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred             ccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCc
Confidence            46688999999999999999999876 789999998 788787776      578999999998661         1249


Q ss_pred             cEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 041250          175 YAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIK  218 (259)
Q Consensus       175 D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~  218 (259)
                      |+|++.+     ..+.-...+..+.+.|+|   ||.| |+|.++
T Consensus       137 D~ifiD~-----dk~~y~~~~~~~~~lL~~---GGvi-i~Dn~l  171 (219)
T d2avda1         137 DVAVVDA-----DKENCSAYYERCLQLLRP---GGIL-AVLRVL  171 (219)
T ss_dssp             EEEEECS-----CSTTHHHHHHHHHHHEEE---EEEE-EEECCS
T ss_pred             cEEEEeC-----CHHHHHHHHHHHHHHhcC---CcEE-EEeCCc
Confidence            9988863     223345678888999999   5655 445443

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=98.40  E-value=2.1e-07  Score=78.33  Aligned_cols=98  Identities=13%  Similarity=0.064  Sum_probs=73.9

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCC---C----CCccEEeeh
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKA---I----SPAYAVLLK  180 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~---~----~~~D~~~~~  180 (259)
                      ...+|||++||+|.+++++++.  ..+++.+|. +.+++.+++     ..++++++.+|.++.   .    ..||+|++.
T Consensus       145 ~g~rVLDl~~gtG~~s~~~a~g--~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~D  222 (318)
T d1wxxa2         145 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD  222 (318)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCCeeeccCCCCcHHHHHHHhc--CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEc
Confidence            3579999999999999998865  458999999 889988886     457899999998761   1    259999986


Q ss_pred             hhhccCCh-------HHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          181 WILLDWND-------EECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       181 ~vlh~~~d-------~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      --...-+.       ..-.++++.+.+.|+|   ||.|+.+..
T Consensus       223 pP~~~~~~~~~~~~~~~~~~l~~~a~~lLkp---GG~Lv~~sc  262 (318)
T d1wxxa2         223 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKE---GGILATASC  262 (318)
T ss_dssp             CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEE---EEEEEEEEC
T ss_pred             CCccccchHHHHHHHHHHHHHHHHHHHHcCC---CCEEEEEeC
Confidence            42211111       1124688899999999   888877655

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.36  E-value=3.1e-07  Score=75.77  Aligned_cols=98  Identities=11%  Similarity=0.128  Sum_probs=73.7

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---------------CCCCeEEEeCCCCC---CCC
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---------------DLVNLKYVGGDMFK---AIS  172 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~~ri~~~~~d~~~---~~~  172 (259)
                      .+++.+||-||||.|..+.++++ +|..+++++|+ |.+++.+++               ..+|++++.+|.++   ...
T Consensus        70 ~~~p~~vLiiG~G~G~~~~~~l~-~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~  148 (276)
T d1mjfa_          70 HPKPKRVLVIGGGDGGTVREVLQ-HDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNR  148 (276)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTT-SCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCC
T ss_pred             CCCCceEEEecCCchHHHHHHHH-hCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccC
Confidence            45678999999999999999886 56678999999 999998875               25799999999876   234


Q ss_pred             CccEEeehhhhccCChHH---HHHHHHHHHHhcccCCCCcEEEEE
Q 041250          173 PAYAVLLKWILLDWNDEE---CVKILKKCKEAITRDGKKRKVIIK  214 (259)
Q Consensus       173 ~~D~~~~~~vlh~~~d~~---~~~il~~~~~~L~p~~~gg~lli~  214 (259)
                      +||+|++-.. +......   ....++.+++.|+|   +|.+++.
T Consensus       149 ~yDvIi~D~~-~~~~~~~~L~t~eF~~~~~~~L~~---~Gv~v~q  189 (276)
T d1mjfa_         149 GFDVIIADST-DPVGPAKVLFSEEFYRYVYDALNN---PGIYVTQ  189 (276)
T ss_dssp             CEEEEEEECC-CCC-----TTSHHHHHHHHHHEEE---EEEEEEE
T ss_pred             CCCEEEEeCC-CCCCCcccccCHHHHHhhHhhcCC---CceEEEe
Confidence            6999986432 2222111   24689999999999   7765544

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=98.35  E-value=6.4e-07  Score=69.27  Aligned_cols=95  Identities=13%  Similarity=0.103  Sum_probs=70.5

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC--CCC--CccEEeehhhhc
Q 041250          115 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK--AIS--PAYAVLLKWILL  184 (259)
Q Consensus       115 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~--~~~--~~D~~~~~~vlh  184 (259)
                      ..+|||++||+|.++.+.+.+... +++.+|. +.+++.+++     ...+++++.+|.++  ...  .||+|++---..
T Consensus        44 ~~~vLDlfaGsG~~giealsrGa~-~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY~  122 (183)
T d2fpoa1          44 DAQCLDCFAGSGALGLEALSRYAA-GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR  122 (183)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTTCS-EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred             hhhhhhhhccccceeeeEEecCcc-eeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCccc
Confidence            468999999999999999998654 7999999 888887776     56789999999887  222  599999986544


Q ss_pred             cCChHHHHHHHHHHHH--hcccCCCCcEEEEEeee
Q 041250          185 DWNDEECVKILKKCKE--AITRDGKKRKVIIKDMI  217 (259)
Q Consensus       185 ~~~d~~~~~il~~~~~--~L~p~~~gg~lli~e~~  217 (259)
                      .-.   ..+++..+.+  .|++   +| ++++|..
T Consensus       123 ~~~---~~~~l~~l~~~~~L~~---~~-iIiiE~~  150 (183)
T d2fpoa1         123 RGL---LEETINLLEDNGWLAD---EA-LIYVESE  150 (183)
T ss_dssp             TTT---HHHHHHHHHHTTCEEE---EE-EEEEEEE
T ss_pred             cch---HHHHHHHHHHCCCCCC---Ce-EEEEEec
Confidence            322   3345555554  5888   45 5666654

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.34  E-value=3.6e-07  Score=75.89  Aligned_cols=100  Identities=10%  Similarity=0.099  Sum_probs=75.2

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---------CCCCeEEEeCCCCC--C-CC-CccEE
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---------DLVNLKYVGGDMFK--A-IS-PAYAV  177 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~ri~~~~~d~~~--~-~~-~~D~~  177 (259)
                      .+++.+||=||||.|..+.++++..|..+++++|+ |.+++.+++         ..+|++++.+|.++  . .+ .||+|
T Consensus        87 ~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI  166 (295)
T d1inla_          87 HPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVI  166 (295)
T ss_dssp             SSSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEE
T ss_pred             CCCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEE
Confidence            35678999999999999999998777778999999 999999887         36899999999987  2 22 59999


Q ss_pred             eehhhhccCChH---HHHHHHHHHHHhcccCCCCcEEEEE
Q 041250          178 LLKWILLDWNDE---ECVKILKKCKEAITRDGKKRKVIIK  214 (259)
Q Consensus       178 ~~~~vlh~~~d~---~~~~il~~~~~~L~p~~~gg~lli~  214 (259)
                      ++--.-..-...   -..+.++.+++.|+|   +|.+++.
T Consensus       167 i~D~~dp~~~~~~~L~t~efy~~~~~~L~~---~Gi~v~q  203 (295)
T d1inla_         167 IIDSTDPTAGQGGHLFTEEFYQACYDALKE---DGVFSAE  203 (295)
T ss_dssp             EEEC----------CCSHHHHHHHHHHEEE---EEEEEEE
T ss_pred             EEcCCCCCcCchhhhccHHHHHHHHhhcCC---CcEEEEe
Confidence            965322111110   025789999999999   7765544

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.33  E-value=3.9e-07  Score=75.00  Aligned_cols=100  Identities=14%  Similarity=0.079  Sum_probs=76.0

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---------CCCCeEEEeCCCCC---CCC-CccEE
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---------DLVNLKYVGGDMFK---AIS-PAYAV  177 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~ri~~~~~d~~~---~~~-~~D~~  177 (259)
                      .+++.+||-||+|.|..+.++++..|..+++++|+ |.+++.+++         ..+|++++.+|.++   ..+ +||+|
T Consensus        73 ~~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvI  152 (274)
T d1iy9a_          73 HPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVI  152 (274)
T ss_dssp             SSSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEE
T ss_pred             cCCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEE
Confidence            35578999999999999999998777779999999 999999877         36899999999887   222 59999


Q ss_pred             eehhhhccCChH--HHHHHHHHHHHhcccCCCCcEEEEE
Q 041250          178 LLKWILLDWNDE--ECVKILKKCKEAITRDGKKRKVIIK  214 (259)
Q Consensus       178 ~~~~vlh~~~d~--~~~~il~~~~~~L~p~~~gg~lli~  214 (259)
                      ++-..-..-+..  -..+.++.+++.|+|   +|.++..
T Consensus       153 i~D~~~p~~~~~~L~t~eFy~~~~~~L~~---~Gv~v~q  188 (274)
T d1iy9a_         153 MVDSTEPVGPAVNLFTKGFYAGIAKALKE---DGIFVAQ  188 (274)
T ss_dssp             EESCSSCCSCCCCCSTTHHHHHHHHHEEE---EEEEEEE
T ss_pred             EEcCCCCCCcchhhccHHHHHHHHhhcCC---CceEEEe
Confidence            865321111100  124689999999999   7765544

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.28  E-value=6.2e-07  Score=74.80  Aligned_cols=100  Identities=19%  Similarity=0.200  Sum_probs=73.3

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-------CCCCeEEEeCCCCCCC-------CCccE
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-------DLVNLKYVGGDMFKAI-------SPAYA  176 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~ri~~~~~d~~~~~-------~~~D~  176 (259)
                      ..+..+|||+.||+|.++..+++.  +.+++.+|. +.+++.|++       ...+++|+.+|.++..       ..||+
T Consensus       130 ~~~~~rVLdlf~~tG~~sl~aa~~--GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~  207 (309)
T d2igta1         130 ADRPLKVLNLFGYTGVASLVAAAA--GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDI  207 (309)
T ss_dssp             SSSCCEEEEETCTTCHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSE
T ss_pred             ccCCCeEEEecCCCcHHHHHHHhC--CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCE
Confidence            345679999999999999998876  568999999 888888886       2357999999998721       25999


Q ss_pred             Eeehhh---hc----cCC-hHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          177 VLLKWI---LL----DWN-DEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       177 ~~~~~v---lh----~~~-d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      |++---   -.    .|. .+....+++.+.+.|+|   ||.++++..
T Consensus       208 IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~---~g~~ll~t~  252 (309)
T d2igta1         208 ILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSP---KALGLVLTA  252 (309)
T ss_dssp             EEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCT---TCCEEEEEE
T ss_pred             EEECCCcccccccchhHHHHHHHHHHHHHHHHhcCC---CCCEEEEec
Confidence            998421   10    122 12334577788889999   777666654

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=98.27  E-value=7.6e-07  Score=73.02  Aligned_cols=67  Identities=16%  Similarity=0.275  Sum_probs=57.1

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCCCC----CccEEeeh
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAIS----PAYAVLLK  180 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~----~~D~~~~~  180 (259)
                      .+..+++|+|||+|..+..++ .+|+.+++++|+ |.+++.|++      ...++.+..+|++++.+    .||+|+.+
T Consensus       109 ~~~~~vld~g~GsG~i~~~la-~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsN  186 (271)
T d1nv8a_         109 YGIKTVADIGTGSGAIGVSVA-KFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSN  186 (271)
T ss_dssp             HTCCEEEEESCTTSHHHHHHH-HHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEEC
T ss_pred             ccccEEEEeeeeeehhhhhhh-hcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEc
Confidence            345689999999999999987 579999999999 899988887      56789999999998543    58998877

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=5.9e-07  Score=74.28  Aligned_cols=99  Identities=12%  Similarity=0.093  Sum_probs=75.1

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---------CCCCeEEEeCCCCC---CCC-CccEE
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---------DLVNLKYVGGDMFK---AIS-PAYAV  177 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~ri~~~~~d~~~---~~~-~~D~~  177 (259)
                      .+++.+||-||+|.|..+.++++..|..+++++|+ |.+++.+++         ..+|++++.+|.++   ..+ +||+|
T Consensus        76 ~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI  155 (285)
T d2o07a1          76 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVI  155 (285)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred             CcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEE
Confidence            45678999999999999999997777789999999 999999987         36899999999887   223 59999


Q ss_pred             eehhhhccCChH---HHHHHHHHHHHhcccCCCCcEEEEE
Q 041250          178 LLKWILLDWNDE---ECVKILKKCKEAITRDGKKRKVIIK  214 (259)
Q Consensus       178 ~~~~vlh~~~d~---~~~~il~~~~~~L~p~~~gg~lli~  214 (259)
                      ++-- .+.....   ...+.++.+++.|+|   ||.+++.
T Consensus       156 i~D~-~~p~~~~~~L~t~eF~~~~~~~L~~---~Gi~v~q  191 (285)
T d2o07a1         156 ITDS-SDPMGPAESLFKESYYQLMKTALKE---DGVLCCQ  191 (285)
T ss_dssp             EEEC-C-----------CHHHHHHHHHEEE---EEEEEEE
T ss_pred             EEcC-CCCCCcccccccHHHHHHHHHhcCC---CCeEEEe
Confidence            8753 2222111   123579999999999   7765554

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.25  E-value=7.9e-07  Score=74.18  Aligned_cols=100  Identities=12%  Similarity=0.082  Sum_probs=73.2

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---------CCCCeEEEeCCCCC---C-CCCccEE
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---------DLVNLKYVGGDMFK---A-ISPAYAV  177 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~ri~~~~~d~~~---~-~~~~D~~  177 (259)
                      .+++.+||-||+|.|..+.++++..|-.+++++|+ |.+++.+++         ..+|++++.+|.++   . ...||+|
T Consensus       104 ~~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvI  183 (312)
T d2b2ca1         104 HPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVI  183 (312)
T ss_dssp             SSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEE
T ss_pred             CCCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEE
Confidence            35678999999999999999998766678999999 999998887         34899999999987   2 2259999


Q ss_pred             eehhhhccCCh--HHHHHHHHHHHHhcccCCCCcEEEEE
Q 041250          178 LLKWILLDWND--EECVKILKKCKEAITRDGKKRKVIIK  214 (259)
Q Consensus       178 ~~~~vlh~~~d--~~~~~il~~~~~~L~p~~~gg~lli~  214 (259)
                      ++--.--.-+.  --....++.+++.|+|   ||.++..
T Consensus       184 I~D~~dp~~~~~~L~t~eFy~~~~~~L~~---~Gi~v~q  219 (312)
T d2b2ca1         184 ITDSSDPVGPAESLFGQSYYELLRDALKE---DGILSSQ  219 (312)
T ss_dssp             EECCC-------------HHHHHHHHEEE---EEEEEEE
T ss_pred             EEcCCCCCCcchhhhhHHHHHHHHhhcCC---CcEEEEe
Confidence            86532111111  1235679999999999   6765554

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.22  E-value=1.4e-06  Score=72.12  Aligned_cols=100  Identities=14%  Similarity=0.127  Sum_probs=76.4

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---------CCCCeEEEeCCCCC---CCC--CccE
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---------DLVNLKYVGGDMFK---AIS--PAYA  176 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~ri~~~~~d~~~---~~~--~~D~  176 (259)
                      .+++.+||=||+|.|..+.++++..|-.+++++|+ |.+++.+++         ..+|++++.+|.++   ..+  .||+
T Consensus        78 ~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDv  157 (290)
T d1xj5a_          78 IPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDA  157 (290)
T ss_dssp             SSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred             CCCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccE
Confidence            35678999999999999999998777678999999 999999887         37999999999876   222  5999


Q ss_pred             EeehhhhccCChH---HHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250          177 VLLKWILLDWNDE---ECVKILKKCKEAITRDGKKRKVIIKD  215 (259)
Q Consensus       177 ~~~~~vlh~~~d~---~~~~il~~~~~~L~p~~~gg~lli~e  215 (259)
                      |++-.. ......   -....++.+++.|+|   ||.+++.-
T Consensus       158 Ii~D~~-dp~~~~~~L~t~eF~~~~~~~L~~---~Gi~v~q~  195 (290)
T d1xj5a_         158 VIVDSS-DPIGPAKELFEKPFFQSVARALRP---GGVVCTQA  195 (290)
T ss_dssp             EEECCC-CTTSGGGGGGSHHHHHHHHHHEEE---EEEEEEEC
T ss_pred             EEEcCC-CCCCcchhhCCHHHHHHHHHhcCC---CcEEEEec
Confidence            986421 111111   124689999999999   77665553

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.20  E-value=2.2e-06  Score=68.84  Aligned_cols=83  Identities=11%  Similarity=0.239  Sum_probs=63.1

Q ss_pred             hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEeCCCCC-CCCC-c
Q 041250          101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFK-AISP-A  174 (259)
Q Consensus       101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~-~~~~-~  174 (259)
                      ...+++..+  .....+||+||||+|.++..+++..  .+++++|+ +..++..++   ..++++++.+|+.+ +++. .
T Consensus        10 ~~~iv~~~~--~~~~d~VlEIGpG~G~LT~~Ll~~~--~~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~~~~~~   85 (235)
T d1qama_          10 IDKIMTNIR--LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQ   85 (235)
T ss_dssp             HHHHHTTCC--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSC
T ss_pred             HHHHHHhcC--CCCCCeEEEECCCchHHHHHHHhCc--CceEEEeeccchHHHHHHHhhcccchhhhhhhhhhccccccc
Confidence            455666666  7788999999999999999999984  47888998 777777665   56899999999998 6653 3


Q ss_pred             cEEeehhhhccCC
Q 041250          175 YAVLLKWILLDWN  187 (259)
Q Consensus       175 D~~~~~~vlh~~~  187 (259)
                      ...++++.-++.+
T Consensus        86 ~~~vv~NLPYnIs   98 (235)
T d1qama_          86 SYKIFGNIPYNIS   98 (235)
T ss_dssp             CCEEEEECCGGGH
T ss_pred             cceeeeeehhhhh
Confidence            3444555555443

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.17  E-value=9.6e-07  Score=71.39  Aligned_cols=91  Identities=14%  Similarity=0.236  Sum_probs=70.6

Q ss_pred             hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEeCCCCC-CCCC-c
Q 041250          101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFK-AISP-A  174 (259)
Q Consensus       101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~-~~~~-~  174 (259)
                      ...+++..+  ..+..+|||||||+|.++..|++..  .+++++|+ +.+++.+++   ..++++++.+|+.+ +++. .
T Consensus        18 i~kIv~~~~--~~~~d~VLEIGpG~G~LT~~L~~~~--~~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~~~~~~   93 (245)
T d1yuba_          18 LNQIIKQLN--LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQ   93 (245)
T ss_dssp             HHHHHHHCC--CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSS
T ss_pred             HHHHHHhcC--CCCCCeEEEECCCccHHHHHHHhhc--CceeEeeecccchhhhhhhhhhccchhhhhhhhhccccccce
Confidence            466777777  7778899999999999999999984  47999998 677777766   45799999999998 6663 4


Q ss_pred             cEEeehhhhccCChHHHHHHH
Q 041250          175 YAVLLKWILLDWNDEECVKIL  195 (259)
Q Consensus       175 D~~~~~~vlh~~~d~~~~~il  195 (259)
                      +..++++.-++.+-.-..+++
T Consensus        94 ~~~vv~NLPY~Ist~il~~~l  114 (245)
T d1yuba_          94 RYKIVGNIPYHLSTQIIKKVV  114 (245)
T ss_dssp             EEEEEEECCSSSCHHHHHHHH
T ss_pred             eeeEeeeeehhhhHHHHHHHh
Confidence            556677777778765433333

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=98.16  E-value=9.3e-07  Score=74.24  Aligned_cols=101  Identities=14%  Similarity=0.072  Sum_probs=73.3

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-------CCCCeEEEeCCCCCC------CC-CccE
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-------DLVNLKYVGGDMFKA------IS-PAYA  176 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~ri~~~~~d~~~~------~~-~~D~  176 (259)
                      .....+|||+.||+|.+++.++... ..+++.+|+ +..++.+++       ...+++++.+|.++-      .. .||+
T Consensus       142 ~~~g~~VLdlf~~~G~~sl~aa~~g-a~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~  220 (317)
T d2b78a2         142 SAAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDI  220 (317)
T ss_dssp             TTBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred             hhCCCceeecCCCCcHHHHHHHhCC-CceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCE
Confidence            3446799999999999999877653 347999999 788887776       246899999999862      12 4999


Q ss_pred             Eeehhhh------ccCCh-HHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          177 VLLKWIL------LDWND-EECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       177 ~~~~~vl------h~~~d-~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      |++----      .-+.- ..-.++++.+.+.|+|   ||.|+++-.
T Consensus       221 Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~p---gG~l~~~sc  264 (317)
T d2b78a2         221 IIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSE---NGLIIASTN  264 (317)
T ss_dssp             EEECCCCC-----CCCCHHHHHHHHHHHHHHTEEE---EEEEEEEEC
T ss_pred             EEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCC---CCEEEEEeC
Confidence            9985211      01111 1234689999999999   887777554

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.13  E-value=4.9e-06  Score=65.34  Aligned_cols=94  Identities=15%  Similarity=0.190  Sum_probs=72.4

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-h---HHHhhccc--CCCCeEEEeCCCCCC--CCCccEEeehhhhcc
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-P---HVVNGLES--DLVNLKYVGGDMFKA--ISPAYAVLLKWILLD  185 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~---~~~~~a~~--~~~ri~~~~~d~~~~--~~~~D~~~~~~vlh~  185 (259)
                      ...+++|||+|.|.-++-++-.+|+.+++.+|. .   ..+..+..  ..++++++.....+.  ...||+|+.+.+-  
T Consensus        65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fD~V~sRA~~--  142 (207)
T d1jsxa_          65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAFA--  142 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCSS--
T ss_pred             cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhccccccceehhhhhc--
Confidence            346899999999999999999999999999997 3   33333333  457999999988873  3369998887642  


Q ss_pred             CChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          186 WNDEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       186 ~~d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                        +  ...++.-+...+++   +|+++..-.
T Consensus       143 --~--~~~ll~~~~~~l~~---~g~~~~~KG  166 (207)
T d1jsxa_         143 --S--LNDMVSWCHHLPGE---QGRFYALKG  166 (207)
T ss_dssp             --S--HHHHHHHHTTSEEE---EEEEEEEES
T ss_pred             --C--HHHHHHHHHHhcCC---CcEEEEECC
Confidence              2  34678888888999   898887753

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.09  E-value=2.5e-06  Score=68.09  Aligned_cols=97  Identities=10%  Similarity=0.065  Sum_probs=75.9

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCC---C-------CC
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKA---I-------SP  173 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~---~-------~~  173 (259)
                      ..++.+||+||+++|.-+..+++..| +.+++.+|. |+..+.|++      ..++|+++.+|..+.   .       ..
T Consensus        57 ~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~  136 (227)
T d1susa1          57 LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS  136 (227)
T ss_dssp             HHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTC
T ss_pred             hcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCc
Confidence            45689999999999999999999987 679999998 878877776      568999999999762   1       24


Q ss_pred             ccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          174 AYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       174 ~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      ||++++-.    +. +.-...+..+.+.|+|   ||.|++-+.
T Consensus       137 fD~iFiDa----~k-~~y~~~~e~~~~ll~~---gGiii~DNv  171 (227)
T d1susa1         137 YDFIFVDA----DK-DNYLNYHKRLIDLVKV---GGVIGYDNT  171 (227)
T ss_dssp             BSEEEECS----CS-TTHHHHHHHHHHHBCT---TCCEEEETT
T ss_pred             eeEEEecc----ch-hhhHHHHHHHHhhcCC---CcEEEEccC
Confidence            99998863    22 3345788888999999   665444444

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.07  E-value=8.4e-06  Score=64.11  Aligned_cols=107  Identities=8%  Similarity=-0.022  Sum_probs=74.4

Q ss_pred             hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCC-CeEEEeec-hHHHhhcccCCCCeEEEeCCCCCCC--CCccE
Q 041250          101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPK-LECTCFDL-PHVVNGLESDLVNLKYVGGDMFKAI--SPAYA  176 (259)
Q Consensus       101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~--~~~D~  176 (259)
                      +..+++.+.  .....+|+|.|||+|.++..+.++++. .++.++|+ +..+..++    +..+..+|++...  ..||+
T Consensus         8 ~~~m~~l~~--~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~----~~~~~~~~~~~~~~~~~fd~   81 (223)
T d2ih2a1           8 VDFMVSLAE--APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPP----WAEGILADFLLWEPGEAFDL   81 (223)
T ss_dssp             HHHHHHHCC--CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCT----TEEEEESCGGGCCCSSCEEE
T ss_pred             HHHHHHhcC--CCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcc----cceeeeeehhccccccccce
Confidence            344555555  566789999999999999999887765 46999998 55444433    6788888988733  35898


Q ss_pred             EeehhhhccCC--h-------------------------HHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          177 VLLKWILLDWN--D-------------------------EECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       177 ~~~~~vlh~~~--d-------------------------~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      ++.........  .                         +-...++.++.+.|+|   ||++.++-+
T Consensus        82 ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~---~G~~~~I~p  145 (223)
T d2ih2a1          82 ILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKP---GGVLVFVVP  145 (223)
T ss_dssp             EEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred             ecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhccc---CCceEEEEe
Confidence            88775432110  0                         0123567888899999   899866643

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.07  E-value=3.8e-06  Score=64.75  Aligned_cols=98  Identities=18%  Similarity=0.129  Sum_probs=72.3

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC--C----CC-CccEEee
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK--A----IS-PAYAVLL  179 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~--~----~~-~~D~~~~  179 (259)
                      ...+|||+.||+|.++.+.+.+... +++.+|. +.+++.+++      ..++++++.+|.++  .    .. +||+|++
T Consensus        41 ~~~~vLDlfaGsG~~g~ea~srGa~-~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIfl  119 (182)
T d2fhpa1          41 DGGMALDLYSGSGGLAIEAVSRGMD-KSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLL  119 (182)
T ss_dssp             SSCEEEETTCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCEEEEcccccccccceeeecchh-HHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEEe
Confidence            4679999999999999999998543 7999998 788887776      45689999999876  1    12 5999998


Q ss_pred             hhhhccCChHHHHHHHHHHHH--hcccCCCCcEEEEEeeeec
Q 041250          180 KWILLDWNDEECVKILKKCKE--AITRDGKKRKVIIKDMIKE  219 (259)
Q Consensus       180 ~~vlh~~~d~~~~~il~~~~~--~L~p~~~gg~lli~e~~~~  219 (259)
                      ---.+.   .....+|..+.+  .|++   +| ++|+|.-..
T Consensus       120 DPPY~~---~~~~~~l~~i~~~~~L~~---~g-iIi~E~~~~  154 (182)
T d2fhpa1         120 DPPYAK---QEIVSQLEKMLERQLLTN---EA-VIVCETDKT  154 (182)
T ss_dssp             CCCGGG---CCHHHHHHHHHHTTCEEE---EE-EEEEEEETT
T ss_pred             chhhhh---hHHHHHHHHHHHCCCCCC---CE-EEEEEcCCC
Confidence            765432   223466777765  5888   55 666776433

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.06  E-value=3.7e-06  Score=70.65  Aligned_cols=101  Identities=10%  Similarity=0.077  Sum_probs=73.9

Q ss_pred             CCCCeEEEecCCchHHHHHHHHH-----CCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCCCC--CCccEEeeh
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKA-----FPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFKAI--SPAYAVLLK  180 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~-----~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~~~--~~~D~~~~~  180 (259)
                      ....+|+|.|||+|.++.++.++     .++.+++++|+ +.++..|+.    ......+..+|.+...  .+||+|+..
T Consensus       116 ~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~vi~N  195 (328)
T d2f8la1         116 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISD  195 (328)
T ss_dssp             CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEE
T ss_pred             CCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhccccccccccccccccccC
Confidence            34568999999999999998764     34557999999 777777765    4677788888888743  369999988


Q ss_pred             hhhccC-ChHH---------------HHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          181 WILLDW-NDEE---------------CVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       181 ~vlh~~-~d~~---------------~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      -.+... .++.               -..++..+.+.|+|   ||++.++-+
T Consensus       196 PPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~---~G~~~~I~p  244 (328)
T d2f8la1         196 LPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKP---GGYLFFLVP  244 (328)
T ss_dssp             CCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred             CCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCC---CCceEEEec
Confidence            654322 2211               12368999999999   898766544

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.02  E-value=1.8e-05  Score=60.70  Aligned_cols=113  Identities=16%  Similarity=0.174  Sum_probs=84.4

Q ss_pred             hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-CCCCeEEEeCCCCC-C-----C-
Q 041250          101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-DLVNLKYVGGDMFK-A-----I-  171 (259)
Q Consensus       101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri~~~~~d~~~-~-----~-  171 (259)
                      ...+++.+.  ......+||..+|.|.++..++++  +.+++++|. |.++..+++ ..+|+.++.++|-+ .     . 
T Consensus         7 l~Evl~~l~--~~~g~~~vD~T~G~GGhs~~iL~~--~~~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~~   82 (182)
T d1wg8a2           7 YQEALDLLA--VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALG   82 (182)
T ss_dssp             HHHHHHHHT--CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTT
T ss_pred             HHHHHHhcC--CCCCCEEEEeCCCCcHHHHHHhcc--cCcEEEEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHHcC
Confidence            456666666  677789999999999999999997  568999999 999988877 67899999998876 1     1 


Q ss_pred             -CCccEEee-----hhhhccCCh--HHHHHHHHHHHHhcccCCCCcEEEEEeeeecC
Q 041250          172 -SPAYAVLL-----KWILLDWND--EECVKILKKCKEAITRDGKKRKVIIKDMIKEN  220 (259)
Q Consensus       172 -~~~D~~~~-----~~vlh~~~d--~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~  220 (259)
                       ..+|.|++     ++-+.+-.+  ......|....+.|+|   ||++.++.+...+
T Consensus        83 ~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~---gg~~~ii~fhs~E  136 (182)
T d1wg8a2          83 VERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAP---GGRLVVIAFHSLE  136 (182)
T ss_dssp             CSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEE---EEEEEEEECSHHH
T ss_pred             CCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCC---CCeEEEEecccch
Confidence             24676665     233332222  2234578888999999   9999998875443

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=97.70  E-value=3.8e-05  Score=61.34  Aligned_cols=95  Identities=18%  Similarity=0.274  Sum_probs=71.7

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-h---HHHhhccc--CCCCeEEEeCCCCC-----CC-CCccEEeeh
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-P---HVVNGLES--DLVNLKYVGGDMFK-----AI-SPAYAVLLK  180 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~---~~~~~a~~--~~~ri~~~~~d~~~-----~~-~~~D~~~~~  180 (259)
                      ....+++|||+|.|.-++-++-.+|+.+++.+|- .   ..+..+.+  ...++.++.....+     +. ..||+++.+
T Consensus        69 ~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sR  148 (239)
T d1xdza_          69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR  148 (239)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred             cCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEh
Confidence            3567999999999999999999999999999996 3   33333333  56788888876543     12 259999988


Q ss_pred             hhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          181 WILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       181 ~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      .+-    +  ...++.-+...+++   +|++++.-.
T Consensus       149 Ava----~--l~~ll~~~~~~l~~---~g~~i~~KG  175 (239)
T d1xdza_         149 AVA----R--LSVLSELCLPLVKK---NGLFVALKA  175 (239)
T ss_dssp             CCS----C--HHHHHHHHGGGEEE---EEEEEEEEC
T ss_pred             hhh----C--HHHHHHHHhhhccc---CCEEEEECC
Confidence            543    2  34688888899999   888877664

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=0.00039  Score=56.60  Aligned_cols=74  Identities=20%  Similarity=0.345  Sum_probs=56.2

Q ss_pred             hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-CCC
Q 041250          101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AIS  172 (259)
Q Consensus       101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~  172 (259)
                      ...+++..+  .....+||+||+|.|.++..+++..+  +++++++ +..++..++      ..++++++.+|+.+ +.|
T Consensus        10 ~~kIv~~~~--~~~~d~VlEIGPG~G~LT~~Ll~~~~--~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~   85 (278)
T d1zq9a1          10 INSIIDKAA--LRPTDVVLEVGPGTGNMTVKLLEKAK--KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP   85 (278)
T ss_dssp             HHHHHHHTC--CCTTCEEEEECCTTSTTHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC
T ss_pred             HHHHHHHhC--CCCCCEEEEECCCchHHHHHHHhcCC--cEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhhh
Confidence            455666666  66778999999999999999999854  7888887 666665554      34799999999999 566


Q ss_pred             CccEEe
Q 041250          173 PAYAVL  178 (259)
Q Consensus       173 ~~D~~~  178 (259)
                      ..+.++
T Consensus        86 ~~~~vV   91 (278)
T d1zq9a1          86 FFDTCV   91 (278)
T ss_dssp             CCSEEE
T ss_pred             hhhhhh
Confidence            554433

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=97.48  E-value=0.0002  Score=54.65  Aligned_cols=98  Identities=14%  Similarity=0.089  Sum_probs=68.8

Q ss_pred             CCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-------CCCCeEEEeCCCCC----C--CCCccEEeeh
Q 041250          115 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-------DLVNLKYVGGDMFK----A--ISPAYAVLLK  180 (259)
Q Consensus       115 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~ri~~~~~d~~~----~--~~~~D~~~~~  180 (259)
                      ..+|||+-||+|.++.+.+.+... +++.+|. +.++...++       ......+...|.++    .  .+.||+|++-
T Consensus        44 ~~~vLDlFaGsG~~glEalSRGA~-~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlD  122 (183)
T d2ifta1          44 QSECLDGFAGSGSLGFEALSRQAK-KVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD  122 (183)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTTCS-EEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred             cceEeecccCccceeeeeeeecce-eeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEec
Confidence            468999999999999999998643 7999998 777766655       23456777776544    1  2249999887


Q ss_pred             hhhccCChHHHHHHHHHHHH--hcccCCCCcEEEEEeeeecC
Q 041250          181 WILLDWNDEECVKILKKCKE--AITRDGKKRKVIIKDMIKEN  220 (259)
Q Consensus       181 ~vlh~~~d~~~~~il~~~~~--~L~p~~~gg~lli~e~~~~~  220 (259)
                      --...   +...++|..+..  .|++    +.++++|.-...
T Consensus       123 PPY~~---~~~~~~l~~l~~~~~L~~----~~liiiE~~~~~  157 (183)
T d2ifta1         123 PPFHF---NLAEQAISLLCENNWLKP----NALIYVETEKDK  157 (183)
T ss_dssp             CCSSS---CHHHHHHHHHHHTTCEEE----EEEEEEEEESSS
T ss_pred             hhHhh---hhHHHHHHHHHHhCCcCC----CcEEEEEecCCC
Confidence            66433   234466776665  5888    557777765443

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=97.44  E-value=0.00048  Score=52.40  Aligned_cols=106  Identities=18%  Similarity=0.192  Sum_probs=72.8

Q ss_pred             HHHHHhcccccCCCCeEEEecCCchHHHHHHHHH-CCCCeEEEeechHHHhhcccCCCCeEEEeCCCCCC----------
Q 041250          102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKA-FPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKA----------  170 (259)
Q Consensus       102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~~----------  170 (259)
                      ..+.+.++ .+.+..+|||+||+.|.++..+.+. .+..+++++|+.++-     ..+.+.++.+|+.+.          
T Consensus        11 ~EI~~k~~-l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~-----~i~~~~~~~~d~~~~~~~~~~~~~~   84 (180)
T d1ej0a_          11 DEIQQSDK-LFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMD-----PIVGVDFLQGDFRDELVMKALLERV   84 (180)
T ss_dssp             HHHHHHHC-CCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCC-----CCTTEEEEESCTTSHHHHHHHHHHH
T ss_pred             HHHHHHhC-ccCCCCeEEEEeccCCcceEEEEeeccccceEEEeeccccc-----ccCCceEeecccccchhhhhhhhhc
Confidence            44666666 4577889999999999999998875 455789999974421     456889999999861          


Q ss_pred             -CCCccEEeehhhhccCC----hH-----HHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          171 -ISPAYAVLLKWILLDWN----DE-----ECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       171 -~~~~D~~~~~~vlh~~~----d~-----~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                       ..++|+|+.-.......    |+     -+...+.-+.+.|++   ||.+++-=+
T Consensus        85 ~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~---gG~fV~K~F  137 (180)
T d1ej0a_          85 GDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAP---GGSFVVKVF  137 (180)
T ss_dssp             TTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred             cCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCC---CCcEEEEEe
Confidence             11489988765443222    11     123345556678999   787766554

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=97.43  E-value=0.00041  Score=54.96  Aligned_cols=96  Identities=15%  Similarity=0.084  Sum_probs=64.7

Q ss_pred             CCeEEEecCCchHHHHHHHH----HCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCCC-----CC--CccEEeehhh
Q 041250          115 LNSLVDVGGGTGTAAKAIAK----AFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKA-----IS--PAYAVLLKWI  182 (259)
Q Consensus       115 ~~~vlDvGgG~G~~~~~l~~----~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~-----~~--~~D~~~~~~v  182 (259)
                      +.+||+||++.|.-+..++.    ..++.+++++|+ +..........+||+++.+|..++     ..  .+|++++-..
T Consensus        81 Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~~~~I~~i~gDs~~~~~~~~l~~~~~dlIfID~~  160 (232)
T d2bm8a1          81 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDNA  160 (232)
T ss_dssp             CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEESS
T ss_pred             CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhccccceeeeecccccHHHHHHHHhcCCCEEEEcCC
Confidence            78999999999976654443    347889999998 444444443678999999998752     11  3677766533


Q ss_pred             hccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250          183 LLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI  217 (259)
Q Consensus       183 lh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~  217 (259)
                       |..  +.+..-+ +....|++   ||.++|-|.+
T Consensus       161 -H~~--~~v~~~~-~~~~lLk~---GG~iIveD~i  188 (232)
T d2bm8a1         161 -HAN--TFNIMKW-AVDHLLEE---GDYFIIEDMI  188 (232)
T ss_dssp             -CSS--HHHHHHH-HHHHTCCT---TCEEEECSCH
T ss_pred             -cch--HHHHHHH-HHhcccCc---CCEEEEEcCC
Confidence             543  2223334 35678998   8887777764

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

Probab=97.32  E-value=0.00069  Score=55.66  Aligned_cols=101  Identities=13%  Similarity=0.060  Sum_probs=75.9

Q ss_pred             CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhccc--------CCCCeEEEeCCCCCCCC------Cc----
Q 041250          113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES--------DLVNLKYVGGDMFKAIS------PA----  174 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~--------~~~ri~~~~~d~~~~~~------~~----  174 (259)
                      .+...||.+|||.=.....+ ...++++++-+|+|++++.-++        ...+..++..|+.++++      ++    
T Consensus        88 ~g~~qvV~LGaGlDTr~~Rl-~~~~~~~~~EvD~p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~  166 (297)
T d2uyoa1          88 DGIRQFVILASGLDSRAYRL-DWPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSA  166 (297)
T ss_dssp             TTCCEEEEETCTTCCHHHHS-CCCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTS
T ss_pred             hCCCeEEEeCcccCChhhhc-CCCcCceEEEcCChHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCCC
Confidence            45678889999998888776 3457889999999999975443        24567788888876422      22    


Q ss_pred             -cEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 041250          175 -YAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIK  218 (259)
Q Consensus       175 -D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~  218 (259)
                       =+++.-.++++++.+++.++|+.+.+...|   |+. ++.|...
T Consensus       167 ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~~---GS~-l~~d~~~  207 (297)
T d2uyoa1         167 RTAWLAEGLLMYLPATAQDGLFTEIGGLSAV---GSR-IAVETSP  207 (297)
T ss_dssp             CEEEEECSCGGGSCHHHHHHHHHHHHHTCCT---TCE-EEEECCC
T ss_pred             CEEEEEccccccCCHHHHHHHHHHHHHhCCC---CCE-EEEEecc
Confidence             356666789999999999999999999988   666 4555543

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=97.25  E-value=0.00073  Score=53.65  Aligned_cols=107  Identities=11%  Similarity=-0.001  Sum_probs=66.3

Q ss_pred             HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHH---hhccc--CCCCeEEEeCCCCCCC-C-Cc
Q 041250          102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVV---NGLES--DLVNLKYVGGDMFKAI-S-PA  174 (259)
Q Consensus       102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~---~~a~~--~~~ri~~~~~d~~~~~-~-~~  174 (259)
                      .++.+.+-  +....+|||+|||.|.++..++.+.+..++.++++-.-.   +...+  ..+-+++...+-.... + .+
T Consensus        56 ~~~~~~~~--~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~~dv~~l~~~~~  133 (257)
T d2p41a1          56 RWFVERNL--VTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERC  133 (257)
T ss_dssp             HHHHHTTS--SCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCC
T ss_pred             HHHHHhcC--ccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCccccccccccccchhhhhHHhcCCCcC
Confidence            44555554  666779999999999999999988766677777762111   11111  2234566666443322 2 58


Q ss_pred             cEEeehhhhccCC----hHHHHHHHHHHHHhcccCCCCcEEEE
Q 041250          175 YAVLLKWILLDWN----DEECVKILKKCKEAITRDGKKRKVII  213 (259)
Q Consensus       175 D~~~~~~vlh~~~----d~~~~~il~~~~~~L~p~~~gg~lli  213 (259)
                      |++++--.-+.-+    .+...++|.-+.+.|+|   ||.+++
T Consensus       134 D~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~---gg~Fvv  173 (257)
T d2p41a1         134 DTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSN---NTQFCV  173 (257)
T ss_dssp             SEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCT---TCEEEE
T ss_pred             CEEEeeCCCCCCCchhhhhhHHHHHHHHHHHccc---CCEEEE
Confidence            9888764333211    12234677777789999   887554

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=97.21  E-value=0.00013  Score=58.63  Aligned_cols=65  Identities=12%  Similarity=0.202  Sum_probs=52.3

Q ss_pred             hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEeCCCCC
Q 041250          101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFK  169 (259)
Q Consensus       101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~  169 (259)
                      ...+++...  ..+...||+||||.|.++..|++..  .+++++|+ +..++..++   ..++++++.+|+.+
T Consensus        10 ~~~Iv~~~~--~~~~d~vlEIGpG~G~LT~~Ll~~~--~~v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~l~   78 (252)
T d1qyra_          10 IDSIVSAIN--PQKGQAMVEIGPGLAALTEPVGERL--DQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMT   78 (252)
T ss_dssp             HHHHHHHHC--CCTTCCEEEECCTTTTTHHHHHTTC--SCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGG
T ss_pred             HHHHHHhcC--CCCCCEEEEECCCchHHHHHHHccC--CceEEEEeccchhHHHHHHhhhccchhHHhhhhhh
Confidence            455666666  6778899999999999999999874  46888888 666666654   45799999999987

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=97.13  E-value=0.00053  Score=57.63  Aligned_cols=85  Identities=13%  Similarity=0.154  Sum_probs=62.2

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCCCC-------CccEEe
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAIS-------PAYAVL  178 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~~-------~~D~~~  178 (259)
                      ..+..+|+|+-||.|.++..+++..  -+++++|. ++.++.|++     ...+++|+.+|..+..+       .+|+++
T Consensus       210 ~~~~~~vlDLycG~G~fsl~La~~~--~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vi  287 (358)
T d1uwva2         210 VQPEDRVLDLFCGMGNFTLPLATQA--ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVL  287 (358)
T ss_dssp             CCTTCEEEEESCTTTTTHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEE
T ss_pred             cCCCceEEEecccccccchhccccc--cEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhhhccCceEE
Confidence            4567899999999999999998864  47999998 888888776     56899999998877321       378887


Q ss_pred             ehhhhccCChHHHHHHHHHHHHhccc
Q 041250          179 LKWILLDWNDEECVKILKKCKEAITR  204 (259)
Q Consensus       179 ~~~vlh~~~d~~~~~il~~~~~~L~p  204 (259)
                      +--     |..-+.+.++.+.+. +|
T Consensus       288 lDP-----PR~G~~~~~~~l~~~-~~  307 (358)
T d1uwva2         288 LDP-----ARAGAAGVMQQIIKL-EP  307 (358)
T ss_dssp             ECC-----CTTCCHHHHHHHHHH-CC
T ss_pred             eCC-----CCccHHHHHHHHHHc-CC
Confidence            652     222223445555543 56

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.05  E-value=0.0007  Score=58.40  Aligned_cols=110  Identities=12%  Similarity=-0.005  Sum_probs=75.5

Q ss_pred             HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCC-------------CCeEEEeec-hHHHhhccc-------CCCCe
Q 041250          102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFP-------------KLECTCFDL-PHVVNGLES-------DLVNL  160 (259)
Q Consensus       102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p-------------~~~~~~~D~-~~~~~~a~~-------~~~ri  160 (259)
                      ..+++.++  .....+|+|-.||+|.++.++.+...             .....++|+ +.+...|+.       ...+.
T Consensus       152 ~~mv~ll~--~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~  229 (425)
T d2okca1         152 QAMVDCIN--PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRS  229 (425)
T ss_dssp             HHHHHHHC--CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCC
T ss_pred             Hhhheecc--CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccc
Confidence            33444444  34567999999999999999877532             124789998 666666654       23466


Q ss_pred             EEEeCCCCCCCC--CccEEeehhhhccCC---------------hHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          161 KYVGGDMFKAIS--PAYAVLLKWILLDWN---------------DEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       161 ~~~~~d~~~~~~--~~D~~~~~~vlh~~~---------------d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      ....+|.+...+  .||+|+..--+..-.               ...-...+..+.+.|++   ||++.++=+
T Consensus       230 ~i~~~d~l~~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~---~G~~~iI~p  299 (425)
T d2okca1         230 PIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKT---GGRAAVVLP  299 (425)
T ss_dssp             SEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred             eeecCchhhhhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCC---CCeEEEEec
Confidence            778889988433  599999886553211               11124589999999999   898766654

>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Transcriptional regulator IclR, N-terminal domain
domain: Transcriptional regulator IclR, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.91  E-value=4.5e-05  Score=49.63  Aligned_cols=57  Identities=14%  Similarity=0.184  Sum_probs=46.5

Q ss_pred             cCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhh
Q 041250            9 LGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNAS   66 (259)
Q Consensus         9 l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~   66 (259)
                      +.|++.+...++|.|+.|||+++|+++..+.|++..+...+++. ...+++|.+++..
T Consensus         8 l~IL~~~a~~~~~~s~~eia~~~~~~~st~~rll~tL~~~g~l~-~~~~g~y~lG~~l   64 (75)
T d1mkma1           8 FEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVL-RKKDKRYVPGYKL   64 (75)
T ss_dssp             HHHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEE-ECTTSCEEECTHH
T ss_pred             HHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE-ECCCCCEeecHHH
Confidence            45778887766889999999999999999999999888777653 2346889998753

>d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Leucine carboxy methyltransferase Ppm1
domain: Leucine carboxy methyltransferase Ppm1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.85  E-value=0.0057  Score=50.68  Aligned_cols=103  Identities=17%  Similarity=0.177  Sum_probs=82.8

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhccc--------------------------CCCCeEEEeCCC
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES--------------------------DLVNLKYVGGDM  167 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~--------------------------~~~ri~~~~~d~  167 (259)
                      +...||-+|||.=.....+...+|+++++=+|.|++++.=++                          ..++...+..|+
T Consensus        96 ~~~QVV~LGaG~DTr~~Rl~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~~s~~y~lv~~DL  175 (328)
T d1rjda_          96 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDL  175 (328)
T ss_dssp             SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCT
T ss_pred             CCcEEEEeCCccchHHHHhhccCCCcEEEECCcHHHHHHHHHHHHhchhhhhhccccccccccccccCCCCCeEEEecCC
Confidence            345899999999999999999999999999999988863211                          247889999999


Q ss_pred             CC-CC----------CC-ccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecC
Q 041250          168 FK-AI----------SP-AYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKEN  220 (259)
Q Consensus       168 ~~-~~----------~~-~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~  220 (259)
                      .+ .+          ++ .-+++.--+|.+++.+++.++++.+.+..+.    +.+++.|++.+.
T Consensus       176 ~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f~~----~~~i~YE~i~~~  236 (328)
T d1rjda_         176 NDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFSH----GLWISYDPIGGS  236 (328)
T ss_dssp             TCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSS----EEEEEEEECCCC
T ss_pred             CCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhCCC----ceEEEeccCCCC
Confidence            87 21          11 2356666899999999999999999998874    889999998653

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.97  E-value=0.023  Score=46.51  Aligned_cols=105  Identities=11%  Similarity=0.124  Sum_probs=71.4

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-C-CC-CccEEeehh
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-A-IS-PAYAVLLKW  181 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~-~~-~~D~~~~~~  181 (259)
                      .....+|||+.+|.|.=+..++.... +..++..|. +.-+...++     ...++.....|... + .. .||.|++--
T Consensus       114 ~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILvDa  193 (313)
T d1ixka_         114 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA  193 (313)
T ss_dssp             CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred             CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccccEEEEcc
Confidence            45568999999999999999988654 567899998 544444333     56788888888776 2 22 589888721


Q ss_pred             -------------hhccCChHH-------HHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250          182 -------------ILLDWNDEE-------CVKILKKCKEAITRDGKKRKVIIKDMIKE  219 (259)
Q Consensus       182 -------------vlh~~~d~~-------~~~il~~~~~~L~p~~~gg~lli~e~~~~  219 (259)
                                   +...|..++       ..+||.++.+.++|   ||+|+-....+.
T Consensus       194 PCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~---gG~lVYsTCSl~  248 (313)
T d1ixka_         194 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKP---GGILVYSTCSLE  248 (313)
T ss_dssp             CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEESCCC
T ss_pred             ccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCC---CcEEEEeeccCC
Confidence                         222233222       25688999999999   887765555443

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.92  E-value=0.026  Score=45.51  Aligned_cols=106  Identities=12%  Similarity=0.120  Sum_probs=71.3

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhh----ccc-CCCCeEEEeCCCCCC---CC-CccEEeehh
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNG----LES-DLVNLKYVGGDMFKA---IS-PAYAVLLKW  181 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~----a~~-~~~ri~~~~~d~~~~---~~-~~D~~~~~~  181 (259)
                      .....+|||+.+|.|.=+..++...++.+++..|. +.-+..    .++ ....+.....|....   .+ .||.|++--
T Consensus       100 ~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~Da  179 (284)
T d1sqga2         100 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA  179 (284)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred             ccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccEEEEec
Confidence            45678999999999999999999888889999998 433333    333 334455555555431   22 489887632


Q ss_pred             -------------hhccCChHH-------HHHHHHHHHHhcccCCCCcEEEEEeeeecC
Q 041250          182 -------------ILLDWNDEE-------CVKILKKCKEAITRDGKKRKVIIKDMIKEN  220 (259)
Q Consensus       182 -------------vlh~~~d~~-------~~~il~~~~~~L~p~~~gg~lli~e~~~~~  220 (259)
                                   +.+.|+.++       ..+||.++.+.++|   ||+|+-....+..
T Consensus       180 PCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~---gG~lvYsTCS~~~  235 (284)
T d1sqga2         180 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKT---GGTLVYATCSVLP  235 (284)
T ss_dssp             CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEE---EEEEEEEESCCCG
T ss_pred             cccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCC---CceEEEeeecCch
Confidence                         333444322       35789999999999   8877666554443

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.89  E-value=0.0088  Score=49.34  Aligned_cols=56  Identities=11%  Similarity=0.144  Sum_probs=44.1

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc--CCCCeEEEeCCCCC
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES--DLVNLKYVGGDMFK  169 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~ri~~~~~d~~~  169 (259)
                      ...+|||||.|.|.++..++++.---++++++. +...+..++  ..+|++++.+|++.
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~~~~~ii~~D~l~  101 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD  101 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccCCCcEEEeCchhh
Confidence            456899999999999999998742237999998 555555554  45789999999874

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.89  E-value=0.0095  Score=50.19  Aligned_cols=94  Identities=12%  Similarity=0.018  Sum_probs=70.3

Q ss_pred             CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----C---------------CCCeEEEeCCCCC---
Q 041250          114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----D---------------LVNLKYVGGDMFK---  169 (259)
Q Consensus       114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~---------------~~ri~~~~~d~~~---  169 (259)
                      +..+|||..||+|..+++.+++.+.-+++..|+ +.+++.+++     .               ...+.+...|...   
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~  124 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  124 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence            367899999999999999999888778999999 888888775     1               1345666667654   


Q ss_pred             CCC-CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          170 AIS-PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       170 ~~~-~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      ... .||+|.+--    +.-  ....|..+.++++.   ||.|.|.-+
T Consensus       125 ~~~~~fDvIDiDP----fGs--~~pfldsAi~a~~~---~Gll~vTaT  163 (375)
T d2dula1         125 ERHRYFHFIDLDP----FGS--PMEFLDTALRSAKR---RGILGVTAT  163 (375)
T ss_dssp             HSTTCEEEEEECC----SSC--CHHHHHHHHHHEEE---EEEEEEEEC
T ss_pred             hhcCcCCcccCCC----CCC--cHHHHHHHHHHhcc---CCEEEEEec
Confidence            233 489888775    222  24689999999998   787777654

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.64  E-value=0.014  Score=43.13  Aligned_cols=93  Identities=12%  Similarity=0.020  Sum_probs=59.2

Q ss_pred             cCCCCeEEEecCC-chHHHHHHHHHCCCCeEEEeec-hHHHhhccc-CCCCeEEEeCCCCC---CCC-CccEEeeh-hhh
Q 041250          112 FEGLNSLVDVGGG-TGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-DLVNLKYVGGDMFK---AIS-PAYAVLLK-WIL  183 (259)
Q Consensus       112 ~~~~~~vlDvGgG-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri~~~~~d~~~---~~~-~~D~~~~~-~vl  183 (259)
                      .....+|+-+|+| .|.++..+++.. +++++++|. ++-++.+++ ..+.+ +...+-.+   ... .+|+++-. ..-
T Consensus        25 ~~~g~~vlI~GaG~vG~~a~q~ak~~-G~~vi~~~~~~~k~~~a~~lGa~~~-i~~~~~~~~~~~~~~~~d~vi~~~~~~  102 (168)
T d1piwa2          25 CGPGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMKMGADHY-IATLEEGDWGEKYFDTFDLIVVCASSL  102 (168)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHHTCSEE-EEGGGTSCHHHHSCSCEEEEEECCSCS
T ss_pred             cCCCCEEEEECCCCcchhHHHHhhhc-cccccccccchhHHHHhhccCCcEE-eeccchHHHHHhhhcccceEEEEecCC
Confidence            6667889889988 677777777765 689999997 677787876 33322 22121111   222 58877653 222


Q ss_pred             ccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          184 LDWNDEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       184 h~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      +...       +....+.++|   +|+++++-.
T Consensus       103 ~~~~-------~~~~~~~l~~---~G~iv~~G~  125 (168)
T d1piwa2         103 TDID-------FNIMPKAMKV---GGRIVSISI  125 (168)
T ss_dssp             TTCC-------TTTGGGGEEE---EEEEEECCC
T ss_pred             ccch-------HHHHHHHhhc---cceEEEecc
Confidence            2111       3446778999   899988763

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=95.50  E-value=0.0076  Score=53.10  Aligned_cols=110  Identities=10%  Similarity=-0.022  Sum_probs=69.5

Q ss_pred             HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHC----C--------------CCeEEEeec-hHHHhhccc----C--
Q 041250          102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAF----P--------------KLECTCFDL-PHVVNGLES----D--  156 (259)
Q Consensus       102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~----p--------------~~~~~~~D~-~~~~~~a~~----~--  156 (259)
                      ..+++.+.  .....+|+|-.||+|.++.+..+..    .              .....++|+ +.+...++.    .  
T Consensus       154 ~~mv~ll~--~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~  231 (524)
T d2ar0a1         154 KTIIHLLK--PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDI  231 (524)
T ss_dssp             HHHHHHHC--CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTC
T ss_pred             Hhhhhccc--CccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcc
Confidence            34444444  3446789999999999999876632    1              124789998 766666653    1  


Q ss_pred             ----CCCeEEEeCCCCC-C---CCCccEEeehhhhcc-CC-----------hHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          157 ----LVNLKYVGGDMFK-A---ISPAYAVLLKWILLD-WN-----------DEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       157 ----~~ri~~~~~d~~~-~---~~~~D~~~~~~vlh~-~~-----------d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                          ...-.+..++.+. +   .+.||+|+..--+.. +.           ...-.-.++++.+.|+|   ||++.++-+
T Consensus       232 ~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~---gGr~aiIlP  308 (524)
T d2ar0a1         232 EGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHP---GGRAAVVVP  308 (524)
T ss_dssp             CCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred             cccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccc---cCcEEEEEe
Confidence                1122455566665 2   236999888754421 11           11123589999999999   898877654

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.25  E-value=0.025  Score=42.86  Aligned_cols=106  Identities=13%  Similarity=0.048  Sum_probs=68.4

Q ss_pred             cCCCCeEEEecCCc-hHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEE--eCCCCCC-----CC-CccEEeehh
Q 041250          112 FEGLNSLVDVGGGT-GTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYV--GGDMFKA-----IS-PAYAVLLKW  181 (259)
Q Consensus       112 ~~~~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~--~~d~~~~-----~~-~~D~~~~~~  181 (259)
                      ++...+|+-+|||. |..+..+++.....++++.|. ++-++.|++......+.  ..|+.+.     .+ ++|+++-.-
T Consensus        23 v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~D~vid~v  102 (195)
T d1kola2          23 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDAV  102 (195)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECC
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCCcEEEEECc
Confidence            67788999999998 778888888887778999998 78888888633222111  1122110     12 478877432


Q ss_pred             h-------hccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecC
Q 041250          182 I-------LLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKEN  220 (259)
Q Consensus       182 v-------lh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~  220 (259)
                      -       .+..........++.+.+.++|   ||++.++-...++
T Consensus       103 G~~~~~~~~~~~~~~~~~~~l~~~~~~~r~---gG~v~~~G~~~~~  145 (195)
T d1kola2         103 GFEARGHGHEGAKHEAPATVLNSLMQVTRV---AGKIGIPGLYVTE  145 (195)
T ss_dssp             CTTCBCSSTTGGGSBCTTHHHHHHHHHEEE---EEEEEECSCCCSC
T ss_pred             cccccCCcccceeecCcHHHHHHHHHHHhc---CCEEEEeeecCCC
Confidence            1       0001111123579999999999   9999888764444

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=94.95  E-value=0.12  Score=42.83  Aligned_cols=108  Identities=13%  Similarity=0.176  Sum_probs=72.1

Q ss_pred             CCCCeEEEecCCchHHH-------HHHHH-H--------CCCCeEEEeech-----HHHhhccc---CCC--CeEEEeCC
Q 041250          113 EGLNSLVDVGGGTGTAA-------KAIAK-A--------FPKLECTCFDLP-----HVVNGLES---DLV--NLKYVGGD  166 (259)
Q Consensus       113 ~~~~~vlDvGgG~G~~~-------~~l~~-~--------~p~~~~~~~D~~-----~~~~~a~~---~~~--ri~~~~~d  166 (259)
                      ++.-+|.|+||.+|..+       +...+ +        -|.+++..=|+|     .+......   ...  -+..++|.
T Consensus        50 ~~~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGS  129 (359)
T d1m6ex_          50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGS  129 (359)
T ss_dssp             SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred             CCceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCc
Confidence            34467999999999887       33322 1        356678888986     22222221   111  24457899


Q ss_pred             CCC-CCC--CccEEeehhhhccCCh-------------------------------HHHHHHHHHHHHhcccCCCCcEEE
Q 041250          167 MFK-AIS--PAYAVLLKWILLDWND-------------------------------EECVKILKKCKEAITRDGKKRKVI  212 (259)
Q Consensus       167 ~~~-~~~--~~D~~~~~~vlh~~~d-------------------------------~~~~~il~~~~~~L~p~~~gg~ll  212 (259)
                      |+. -+|  ..++++.++.||-++.                               ++-..+|+.=++-|.|   ||+++
T Consensus       130 FY~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~---GG~mv  206 (359)
T d1m6ex_         130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVP---GGRMV  206 (359)
T ss_dssp             SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCT---TCEEE
T ss_pred             hhhhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CcEEE
Confidence            999 456  4899999999986531                               1223577777778999   99999


Q ss_pred             EEeeeecCCCC
Q 041250          213 IKDMIKENRKK  223 (259)
Q Consensus       213 i~e~~~~~~~~  223 (259)
                      ++-...++...
T Consensus       207 l~~~gr~~~~~  217 (359)
T d1m6ex_         207 LTILGRRSEDR  217 (359)
T ss_dssp             EEEEECSSSSS
T ss_pred             EEEeccCCCCC
Confidence            99888776543

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.88  E-value=0.096  Score=38.17  Aligned_cols=82  Identities=18%  Similarity=0.099  Sum_probs=56.2

Q ss_pred             eEEEecCCc--hHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCC-CCCCccEEeehhhhccCChHHHH
Q 041250          117 SLVDVGGGT--GTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK-AISPAYAVLLKWILLDWNDEECV  192 (259)
Q Consensus       117 ~vlDvGgG~--G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~~~~D~~~~~~vlh~~~d~~~~  192 (259)
                      +|+=||||.  |.++..|.+..+..+++++|. ++.++.+++.. .+.....+... ....+|++++.     -|.+...
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~dlIila-----~p~~~~~   76 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLG-IIDEGTTSIAKVEDFSPDFVMLS-----SPVRTFR   76 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTT-SCSEEESCGGGGGGTCCSEEEEC-----SCHHHHH
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhh-cchhhhhhhhhhhcccccccccc-----CCchhhh
Confidence            467789985  445666777778889999998 78888887522 12222222222 23358998887     5566778


Q ss_pred             HHHHHHHHhccc
Q 041250          193 KILKKCKEAITR  204 (259)
Q Consensus       193 ~il~~~~~~L~p  204 (259)
                      .++.++.+.+++
T Consensus        77 ~vl~~l~~~~~~   88 (171)
T d2g5ca2          77 EIAKKLSYILSE   88 (171)
T ss_dssp             HHHHHHHHHSCT
T ss_pred             hhhhhhhccccc
Confidence            899999999987

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.37  E-value=0.1  Score=42.00  Aligned_cols=69  Identities=13%  Similarity=0.146  Sum_probs=51.9

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHH-CCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC--C-C---CCccEEe
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKA-FPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK--A-I---SPAYAVL  178 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~--~-~---~~~D~~~  178 (259)
                      .....+|||+.+|.|.=+..++.. .++.+++.+|. +.-+...++     ...++.+...|+..  + .   ..||.|+
T Consensus        92 ~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~VL  171 (293)
T d2b9ea1          92 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL  171 (293)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred             CCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccccccceeeEEe
Confidence            455778999999999999998875 45678999998 555555444     56789999999876  2 1   2488887


Q ss_pred             eh
Q 041250          179 LK  180 (259)
Q Consensus       179 ~~  180 (259)
                      +-
T Consensus       172 ~D  173 (293)
T d2b9ea1         172 LD  173 (293)
T ss_dssp             EC
T ss_pred             ec
Confidence            65

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=94.22  E-value=0.078  Score=39.26  Aligned_cols=97  Identities=15%  Similarity=0.066  Sum_probs=62.6

Q ss_pred             cCCCCeEEEecCCc-hHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeC--CCCC--------CCC-CccEEe
Q 041250          112 FEGLNSLVDVGGGT-GTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGG--DMFK--------AIS-PAYAVL  178 (259)
Q Consensus       112 ~~~~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~--d~~~--------~~~-~~D~~~  178 (259)
                      .+...+||-+|+|. |.++..+++...--+++++|. ++-.+.+++......+-..  |+.+        ..+ ++|+++
T Consensus        26 ~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~Dvvi  105 (182)
T d1vj0a2          26 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFIL  105 (182)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEE
T ss_pred             CCCCCEEEEECCCccchhheecccccccccccccccccccccccccccceEEEeccccchHHHHHHHHHhhCCCCceEEe
Confidence            45568899998884 888888898874337999998 7788888864322222222  1111        112 488876


Q ss_pred             ehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250          179 LKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKE  219 (259)
Q Consensus       179 ~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~  219 (259)
                      -.-     ..+   ..++...+.++|   ||+++++-...+
T Consensus       106 d~v-----G~~---~~~~~a~~~l~~---~G~iv~~G~~~~  135 (182)
T d1vj0a2         106 EAT-----GDS---RALLEGSELLRR---GGFYSVAGVAVP  135 (182)
T ss_dssp             ECS-----SCT---THHHHHHHHEEE---EEEEEECCCCSC
T ss_pred             ecC-----Cch---hHHHHHHHHhcC---CCEEEEEeecCC
Confidence            331     111   357778899999   999988875433

>d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Biotin repressor-like
domain: Putative transcriptional regulator TM1602, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.19  E-value=0.0035  Score=38.96  Aligned_cols=56  Identities=20%  Similarity=0.245  Sum_probs=40.6

Q ss_pred             HcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCH
Q 041250            8 QLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTN   64 (259)
Q Consensus         8 ~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~   64 (259)
                      ...|.+.|.+..+++|+.+||+.+|++++.+.|-+..+...++ ......+.|.+.+
T Consensus         9 ~~~Il~~L~~~~~~vs~~~La~~l~VS~~TI~rdi~~L~~~G~-~I~~~~gGY~L~~   64 (65)
T d1j5ya1           9 LKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLGY-NIVATPRGYVLAG   64 (65)
T ss_dssp             HHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHHHTC-CCEEETTEEECCT
T ss_pred             HHHHHHHHHHcCCCCcHHHHHHHHCCCHHHHHHHHHHHHHCCC-eEEEeCCCEEeCC
Confidence            3467788866446899999999999999999997777655443 1233446787753

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=93.38  E-value=0.13  Score=37.32  Aligned_cols=79  Identities=11%  Similarity=0.050  Sum_probs=50.6

Q ss_pred             eEEEecCC--chHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCCCCCCccEEeehhhhccCChHHHHH
Q 041250          117 SLVDVGGG--TGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDEECVK  193 (259)
Q Consensus       117 ~vlDvGgG--~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~~~~D~~~~~~vlh~~~d~~~~~  193 (259)
                      +|.=||+|  -+.++..+.++  +.+++++|. ++.++.+++... +. ...+..+....+|+|++.     .|.+...+
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~--g~~V~~~d~~~~~~~~a~~~~~-~~-~~~~~~~~~~~~DiIila-----vp~~~~~~   72 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRR--GHYLIGVSRQQSTCEKAVERQL-VD-EAGQDLSLLQTAKIIFLC-----TPIQLILP   72 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHTTS-CS-EEESCGGGGTTCSEEEEC-----SCHHHHHH
T ss_pred             EEEEEeecHHHHHHHHHHHHC--CCEEEEEECCchHHHHHHHhhc-cc-eeeeeccccccccccccc-----CcHhhhhh
Confidence            35557776  33445555544  568999998 777777664211 11 112222334569999875     56777889


Q ss_pred             HHHHHHHhccc
Q 041250          194 ILKKCKEAITR  204 (259)
Q Consensus       194 il~~~~~~L~p  204 (259)
                      +++++...+++
T Consensus        73 vl~~l~~~l~~   83 (165)
T d2f1ka2          73 TLEKLIPHLSP   83 (165)
T ss_dssp             HHHHHGGGSCT
T ss_pred             hhhhhhhhccc
Confidence            99999999987

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=93.17  E-value=0.98  Score=32.31  Aligned_cols=93  Identities=14%  Similarity=0.124  Sum_probs=62.0

Q ss_pred             cCCCCeEEEecCC-chHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCCC-----------CC-CccEE
Q 041250          112 FEGLNSLVDVGGG-TGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKA-----------IS-PAYAV  177 (259)
Q Consensus       112 ~~~~~~vlDvGgG-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~-----------~~-~~D~~  177 (259)
                      .....+|+-+||| .|.++..+++.. +.+++++|. ++-++.+++......+..-+..+.           .+ ++|++
T Consensus        24 ~~~g~~vlV~G~G~vG~~~~~~ak~~-Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~v  102 (170)
T d1e3ja2          24 VQLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVT  102 (170)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEE
T ss_pred             CCCCCEEEEEcccccchhhHhhHhhh-cccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCcee
Confidence            5666788889987 677777788776 579999998 777888887444333332221111           12 37877


Q ss_pred             eehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          178 LLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       178 ~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                      +-.-     ..+   ..+..+.+.++|   +|+++++-.
T Consensus       103 id~~-----g~~---~~~~~a~~~~~~---~G~iv~~G~  130 (170)
T d1e3ja2         103 IDCS-----GNE---KCITIGINITRT---GGTLMLVGM  130 (170)
T ss_dssp             EECS-----CCH---HHHHHHHHHSCT---TCEEEECSC
T ss_pred             eecC-----CCh---HHHHHHHHHHhc---CCceEEEec
Confidence            6432     222   457777888999   999988874

>d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Biotin repressor-like
domain: Biotin repressor, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.99  E-value=0.0066  Score=37.43  Aligned_cols=55  Identities=13%  Similarity=0.117  Sum_probs=40.2

Q ss_pred             HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCC-CCCceeecC
Q 041250            7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNN-DEEQGYVLT   63 (259)
Q Consensus         7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~-~~~~~y~~t   63 (259)
                      .++.|...|.+ ++.+|.+|||+.+|++...+.+-+..|...++. .+ ..+..|.++
T Consensus         6 ~~~~iL~~L~~-~~~~s~~eLa~~l~vS~~ti~r~i~~L~~~G~~-I~~~~g~GY~L~   61 (63)
T d1biaa1           6 VPLKLIALLAN-GEFHSGEQLGETLGMSRAAINKHIQTLRDWGVD-VFTVPGKGYSLP   61 (63)
T ss_dssp             HHHHHHHHHTT-SSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCC-CEEETTTEEECS
T ss_pred             HHHHHHHHHHH-CCcCCHHHHHHHHCcCHHHHHHHHHHHHHCCCc-EEEeCCCeEEeC
Confidence            35668888876 478999999999999999999977776655531 12 233358765

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=92.51  E-value=0.14  Score=37.27  Aligned_cols=130  Identities=11%  Similarity=0.057  Sum_probs=72.3

Q ss_pred             HhcccccCCCCeEEEecCCc-hHHHHHHHHHCCCCeEEEeec-hHHHhhccc-CCCCeEEEeCCCCC--C-CCCccEEee
Q 041250          106 QKCKNVFEGLNSLVDVGGGT-GTAAKAIAKAFPKLECTCFDL-PHVVNGLES-DLVNLKYVGGDMFK--A-ISPAYAVLL  179 (259)
Q Consensus       106 ~~~~~~~~~~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri~~~~~d~~~--~-~~~~D~~~~  179 (259)
                      +..+  .+...+|+=+|+|. |.++..+++.. +.+.++.|. ++-.+.+++ ..+.+ +-..+-..  . ..++|+++-
T Consensus        24 ~~~~--~~~G~~VlI~GaG~vG~~a~qlak~~-Ga~~i~~~~~~~~~~~a~~lGad~~-i~~~~~~~~~~~~~~~D~vid   99 (168)
T d1uufa2          24 RHWQ--AGPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKALGADEV-VNSRNADEMAAHLKSFDFILN   99 (168)
T ss_dssp             HHTT--CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHTCSEE-EETTCHHHHHTTTTCEEEEEE
T ss_pred             HHhC--CCCCCEEEEeccchHHHHHHHHhhcc-cccchhhccchhHHHHHhccCCcEE-EECchhhHHHHhcCCCceeee
Confidence            4444  66677777788764 78888888876 678788886 666667766 33322 21111111  1 125887765


Q ss_pred             hhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhh--hhhccCccccCHHHHHHHHh
Q 041250          180 KWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMF--MMVLLTGTERDEKEWAKIFA  257 (259)
Q Consensus       180 ~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~--m~~~~~g~~rt~~e~~~ll~  257 (259)
                      .-     ...   ..++...+.++|   +|+++++-.........+       ..++.  .....+....+..|++++++
T Consensus       100 ~~-----g~~---~~~~~~~~~l~~---~G~iv~~G~~~~~~~~~~-------~~~l~~k~~~i~Gs~~~~~~d~~e~l~  161 (168)
T d1uufa2         100 TV-----AAP---HNLDDFTTLLKR---DGTMTLVGAPATPHKSPE-------VFNLIMKRRAIAGSMIGGIPETQEMLD  161 (168)
T ss_dssp             CC-----SSC---CCHHHHHTTEEE---EEEEEECCCC-------C-------HHHHHTTTCEEEECCSCCHHHHHHHHH
T ss_pred             ee-----ecc---hhHHHHHHHHhc---CCEEEEeccCCCCccccc-------HHHHHHCCcEEEEEeecCHHHHHHHHH
Confidence            42     111   236667789999   899988754222111111       11111  11223555677888888775

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.23  E-value=0.13  Score=37.60  Aligned_cols=91  Identities=15%  Similarity=0.051  Sum_probs=60.0

Q ss_pred             cCCCCeEEEecC--CchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-CCCCeE-EEeCCCCCC-----CC-CccEEeeh
Q 041250          112 FEGLNSLVDVGG--GTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-DLVNLK-YVGGDMFKA-----IS-PAYAVLLK  180 (259)
Q Consensus       112 ~~~~~~vlDvGg--G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri~-~~~~d~~~~-----~~-~~D~~~~~  180 (259)
                      ++...+||-.|+  |.|..++.+++.. ++++++.+. ++-.+.+++ ..+.+- ....|+.+.     .+ ++|+++-.
T Consensus        26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~-G~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g~d~v~d~  104 (174)
T d1yb5a2          26 VKAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEM  104 (174)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEES
T ss_pred             CCCCCEEEEEecccccccccccccccc-CcccccccccccccccccccCcccccccccccHHHHhhhhhccCCceEEeec
Confidence            666788999984  7888899999877 578888876 666777776 333321 111222221     12 48887754


Q ss_pred             hhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250          181 WILLDWNDEECVKILKKCKEAITRDGKKRKVIIKD  215 (259)
Q Consensus       181 ~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e  215 (259)
                      .     . .   ..+....+.++|   +|+++.+-
T Consensus       105 ~-----g-~---~~~~~~~~~l~~---~G~iv~~G  127 (174)
T d1yb5a2         105 L-----A-N---VNLSKDLSLLSH---GGRVIVVG  127 (174)
T ss_dssp             C-----H-H---HHHHHHHHHEEE---EEEEEECC
T ss_pred             c-----c-H---HHHHHHHhccCC---CCEEEEEe
Confidence            2     1 1   357888899999   99998874

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=92.16  E-value=0.5  Score=34.55  Aligned_cols=94  Identities=11%  Similarity=-0.091  Sum_probs=62.8

Q ss_pred             cCCCCeEEEecCCc-hHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEE--EeCCCC-CC-----CC-CccEEeeh
Q 041250          112 FEGLNSLVDVGGGT-GTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKY--VGGDMF-KA-----IS-PAYAVLLK  180 (259)
Q Consensus       112 ~~~~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~--~~~d~~-~~-----~~-~~D~~~~~  180 (259)
                      ++...+|+=+|||. |.++..+++....-++++.|. ++-.+.+++......+  ...|-. ..     .+ ++|+++-.
T Consensus        26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie~  105 (174)
T d1e3ia2          26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDC  105 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEES
T ss_pred             CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEEe
Confidence            66678899999998 999999999886667899998 6677777763222222  112211 10     12 47877644


Q ss_pred             hhhccCChHHHHHHHHHHHHhcccCCCC-cEEEEEee
Q 041250          181 WILLDWNDEECVKILKKCKEAITRDGKK-RKVIIKDM  216 (259)
Q Consensus       181 ~vlh~~~d~~~~~il~~~~~~L~p~~~g-g~lli~e~  216 (259)
                           -..+   ..+....+.++|   + |+++++-.
T Consensus       106 -----~G~~---~~~~~a~~~~~~---g~G~~v~vG~  131 (174)
T d1e3ia2         106 -----AGTA---QTLKAAVDCTVL---GWGSCTVVGA  131 (174)
T ss_dssp             -----SCCH---HHHHHHHHTBCT---TTCEEEECCC
T ss_pred             -----cccc---hHHHHHHHHhhc---CCeEEEecCC
Confidence                 2222   468888899998   6 89888764

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=91.98  E-value=0.065  Score=42.21  Aligned_cols=80  Identities=18%  Similarity=0.172  Sum_probs=54.8

Q ss_pred             HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc--------------CCCCeEEEeCC
Q 041250          102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES--------------DLVNLKYVGGD  166 (259)
Q Consensus       102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------------~~~ri~~~~~d  166 (259)
                      +.+.+.+........+|||.-||.|.-+..++..  +.+++.++. |.+....+.              ...|++++.+|
T Consensus        76 ~~l~kA~gl~~~~~~~VlD~TaGlG~Da~vlA~~--G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~D  153 (250)
T d2oyra1          76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS  153 (250)
T ss_dssp             SHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESC
T ss_pred             hHHHHHhcCCCCCCCEEEECCCcccHHHHHHHhC--CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCc
Confidence            3456665511222358999999999999999998  578999998 433322221              13589999999


Q ss_pred             CCC---CC-CCccEEeehhhh
Q 041250          167 MFK---AI-SPAYAVLLKWIL  183 (259)
Q Consensus       167 ~~~---~~-~~~D~~~~~~vl  183 (259)
                      ..+   .. +.+|+|++--.+
T Consensus       154 s~~~L~~~~~~~DvIYlDPMF  174 (250)
T d2oyra1         154 SLTALTDITPRPQVVYLDPMF  174 (250)
T ss_dssp             HHHHSTTCSSCCSEEEECCCC
T ss_pred             HHHHHhccCCCCCEEEECCCC
Confidence            765   22 258999886554

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=91.60  E-value=0.27  Score=35.95  Aligned_cols=94  Identities=19%  Similarity=0.131  Sum_probs=58.6

Q ss_pred             cCCCCeEEEecCCc-hHHHHHHHHHCCCCeEEEeec-hHHHhhccc-CCCCeEEE-eCCCCCC---C-C-CccEEeehhh
Q 041250          112 FEGLNSLVDVGGGT-GTAAKAIAKAFPKLECTCFDL-PHVVNGLES-DLVNLKYV-GGDMFKA---I-S-PAYAVLLKWI  182 (259)
Q Consensus       112 ~~~~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri~~~-~~d~~~~---~-~-~~D~~~~~~v  182 (259)
                      .+...+|+=+|||. |..+..+++....-++++.|. +.-++.+++ ..+.+-.. ..|+.+.   . + ++|+++-.  
T Consensus        26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~vid~--  103 (174)
T d1f8fa2          26 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALES--  103 (174)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEEC--
T ss_pred             CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcEEEEc--
Confidence            56677888888875 446666777766657788887 777788876 22322111 1122221   1 2 47876644  


Q ss_pred             hccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          183 LLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       183 lh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                         -..   ...++.+.+.++|   +|+++++-.
T Consensus       104 ---~G~---~~~~~~~~~~~~~---~G~i~~~G~  128 (174)
T d1f8fa2         104 ---TGS---PEILKQGVDALGI---LGKIAVVGA  128 (174)
T ss_dssp             ---SCC---HHHHHHHHHTEEE---EEEEEECCC
T ss_pred             ---CCc---HHHHHHHHhcccC---ceEEEEEee
Confidence               221   2467788889999   899988754

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=91.52  E-value=0.084  Score=38.54  Aligned_cols=99  Identities=23%  Similarity=0.280  Sum_probs=63.4

Q ss_pred             HHhcccccCCCCeEEEecC--CchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeC---CCCCC-----CC-
Q 041250          105 IQKCKNVFEGLNSLVDVGG--GTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGG---DMFKA-----IS-  172 (259)
Q Consensus       105 ~~~~~~~~~~~~~vlDvGg--G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~---d~~~~-----~~-  172 (259)
                      ++..+  .....+|+=+||  |.|.++..+++.....++++.|. ++-.+.+++..... ++..   |+.+.     .+ 
T Consensus        20 l~~~~--~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~-~i~~~~~~~~~~~~~~~~~~   96 (170)
T d1jvba2          20 VRKAS--LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADY-VINASMQDPLAEIRRITESK   96 (170)
T ss_dssp             HHHTT--CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSE-EEETTTSCHHHHHHHHTTTS
T ss_pred             HHHhC--CCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCce-eeccCCcCHHHHHHHHhhcc
Confidence            34444  666788999995  46777888888776678999997 77777777622222 2222   22211     12 


Q ss_pred             CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250          173 PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI  217 (259)
Q Consensus       173 ~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~  217 (259)
                      ++|+++-.     ...   ...++.+.+.++|   +|+++++-..
T Consensus        97 ~~d~vid~-----~g~---~~~~~~a~~~l~~---~G~iv~~G~~  130 (170)
T d1jvba2          97 GVDAVIDL-----NNS---EKTLSVYPKALAK---QGKYVMVGLF  130 (170)
T ss_dssp             CEEEEEES-----CCC---HHHHTTGGGGEEE---EEEEEECCSS
T ss_pred             cchhhhcc-----ccc---chHHHhhhhhccc---CCEEEEeccc
Confidence            38877754     222   2456777889999   9999888643

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.03  E-value=0.07  Score=38.83  Aligned_cols=126  Identities=14%  Similarity=0.104  Sum_probs=70.6

Q ss_pred             cCCCCeEEEecCCc-hHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeC--CCCCC----CCCccEEeehhhh
Q 041250          112 FEGLNSLVDVGGGT-GTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGG--DMFKA----ISPAYAVLLKWIL  183 (259)
Q Consensus       112 ~~~~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~--d~~~~----~~~~D~~~~~~vl  183 (259)
                      .+...+|+=+|+|. |..+..+++.. +.+++++|. +.-++.+++......+-..  |..+.    ..++|.++...  
T Consensus        25 ~~~g~~VlV~GaG~vG~~~~~~ak~~-G~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~i~~~--  101 (166)
T d1llua2          25 ARPGQWVAISGIGGLGHVAVQYARAM-GLHVAAIDIDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGVLVTA--  101 (166)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEECC--
T ss_pred             CCCCCEEEEeeccccHHHHHHHHHHc-CCccceecchhhHHHhhhccCccccccccchhHHHHHHHhhcCCccccccc--
Confidence            55667777788765 66666677766 589999998 7777888763222112111  11111    12344443321  


Q ss_pred             ccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhc--cCccccCHHHHHHHHh
Q 041250          184 LDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVL--LTGTERDEKEWAKIFA  257 (259)
Q Consensus       184 h~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~--~~g~~rt~~e~~~ll~  257 (259)
                        -..    ..+....+.++|   +|+++++-.  +.....  .    ..+++.+.-.  .+....+.+||+++++
T Consensus       102 --~~~----~~~~~~~~~l~~---~G~iv~~G~--~~~~~~--~----~~~~~~~k~~~i~Gs~~~~~~d~~e~l~  160 (166)
T d1llua2         102 --VSN----SAFGQAIGMARR---GGTIALVGL--PPGDFP--T----PIFDVVLKGLHIAGSIVGTRADLQEALD  160 (166)
T ss_dssp             --SCH----HHHHHHHTTEEE---EEEEEECCC--CSSEEE--E----EHHHHHHTTCEEEECCSCCHHHHHHHHH
T ss_pred             --ccc----hHHHHHHHHhcC---CcEEEEEEe--cCCCcc--C----CHHHHHhCCcEEEEEeecCHHHHHHHHH
Confidence              111    357778899999   999988753  221111  1    1233333221  2455667888888764

>d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Hypothetical protein PH1061
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=90.91  E-value=0.0078  Score=40.55  Aligned_cols=62  Identities=8%  Similarity=0.052  Sum_probs=47.1

Q ss_pred             HHHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCC-----CCCceeecCHhhh
Q 041250            5 CAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNN-----DEEQGYVLTNASK   67 (259)
Q Consensus         5 ~a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~-----~~~~~y~~t~~~~   67 (259)
                      .-.++.|...|... +++|+.|||+.+++++..+++.++.|...+++..+     ...-.|++|+.++
T Consensus        15 ~p~r~~IL~~L~~~-~~~~~~eLa~~l~is~~~vs~~l~~L~~~glV~~~~~~~d~r~~~~~LT~~G~   81 (100)
T d1ub9a_          15 NPVRLGIMIFLLPR-RKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGM   81 (100)
T ss_dssp             SHHHHHHHHHHHHH-SEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHH
T ss_pred             CHHHHHHHHHhccC-CCeeHHHHHHHHhhccccccHHHHHHhhhceeEEEEcCcCCccccccCCHHHH
Confidence            34578889999754 79999999999999999999988887665544211     1122599999876

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=90.63  E-value=0.25  Score=40.83  Aligned_cols=65  Identities=15%  Similarity=0.282  Sum_probs=42.9

Q ss_pred             cCchHHHHHHHHHHhcchhhhHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHC-------CCCeEEEeechHHHh
Q 041250           81 DESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAF-------PKLECTCFDLPHVVN  151 (259)
Q Consensus        81 ~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-------p~~~~~~~D~~~~~~  151 (259)
                      +.|+....|...++.+   . ..+...+.  .++..+||++|+|+|.++..+++..       -.+++..++..+.+.
T Consensus        52 Tsp~is~~Fg~~ia~~---~-~~~~~~~~--~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~  123 (365)
T d1zkda1          52 TSPEISQMFGELLGLW---S-ASVWKAAD--EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLR  123 (365)
T ss_dssp             SHHHHCHHHHHHHHHH---H-HHHHHHTT--CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHH
T ss_pred             CCCchHHHHHHHHHHH---H-HHHHHHhC--CCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHH
Confidence            5677777888776532   2 22233333  4456689999999999999887643       234678888854443

>d1r1ua_ a.4.5.5 (A:) Metal-sensing transcriptional repressor CzrA {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ArsR-like transcriptional regulators
domain: Metal-sensing transcriptional repressor CzrA
species: Staphylococcus aureus [TaxId: 1280]

Probab=89.96  E-value=0.0077  Score=40.32  Aligned_cols=59  Identities=12%  Similarity=0.114  Sum_probs=43.5

Q ss_pred             HHHHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCC--ceeecCH
Q 041250            4 KCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEE--QGYVLTN   64 (259)
Q Consensus         4 ~~a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~--~~y~~t~   64 (259)
                      .--.++.|+..|..  ++.++.|||+.+|+++..+++=|+.|...+++..+.++  -.|+++.
T Consensus        16 ~d~~Rl~Il~~L~~--~~~~v~el~~~l~~s~~~vS~HL~~L~~~glv~~~r~G~~~~Y~l~~   76 (94)
T d1r1ua_          16 GDYNRIRIMELLSV--SEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDD   76 (94)
T ss_dssp             CSHHHHHHHHHHHH--CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEESS
T ss_pred             CCHHHHHHHHHHHc--CCccHHHHHHHHCCCHHHHHHHHHHHHHCCceEEEEECCEEEEEECc
Confidence            33478889999997  89999999999999999999867666655544222222  2477764

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=89.88  E-value=1.3  Score=31.90  Aligned_cols=134  Identities=10%  Similarity=-0.102  Sum_probs=70.0

Q ss_pred             cCCCCeEEEecCC-chHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCCC--------CC-CccEEeeh
Q 041250          112 FEGLNSLVDVGGG-TGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKA--------IS-PAYAVLLK  180 (259)
Q Consensus       112 ~~~~~~vlDvGgG-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~--------~~-~~D~~~~~  180 (259)
                      .+...+||=+|+| -|..+..+++..-..++++.|. ++-.+.+++....-.+...+--+.        .+ ++|+++-.
T Consensus        26 vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~D~vid~  105 (176)
T d2jhfa2          26 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEV  105 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcCCCCEEEec
Confidence            6677888888775 4556666777777778999998 676777776332222221111111        11 48887764


Q ss_pred             hhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccCHHHHHHHHh
Q 041250          181 WILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAKIFA  257 (259)
Q Consensus       181 ~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~e~~~ll~  257 (259)
                      .--     +   ..++.+...+++   +|..+++-...+.....+ ...........+.....|..+...+|.++++
T Consensus       106 ~G~-----~---~~~~~a~~~~~~---~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~i~Gs~~G~~~~~~~~~~li~  170 (176)
T d2jhfa2         106 IGR-----L---DTMVTALSCCQE---AYGVSVIVGVPPDSQNLS-MNPMLLLSGRTWKGAIFGGFKSKDSVPKLVA  170 (176)
T ss_dssp             SCC-----H---HHHHHHHHHBCT---TTCEEEECSCCCTTCCEE-ECTHHHHTTCEEEECSGGGCCHHHHHHHHHH
T ss_pred             CCc-----h---hHHHHHHHHHhc---CCcceEEecCCCCccccc-ccHHHHhCCCEEEEEEEeCCCHHHHHHHHHH
Confidence            322     1   345666677777   544444444333332221 0001111222222222344455777777764

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=89.88  E-value=0.21  Score=36.71  Aligned_cols=95  Identities=16%  Similarity=0.056  Sum_probs=60.9

Q ss_pred             cCCCCeEEEecCCc-hHHHHHHHHHCCCCeEEEeec-hHHHhhcccC-CCCeE-EEeCCCCC---C--CC-CccEEeehh
Q 041250          112 FEGLNSLVDVGGGT-GTAAKAIAKAFPKLECTCFDL-PHVVNGLESD-LVNLK-YVGGDMFK---A--IS-PAYAVLLKW  181 (259)
Q Consensus       112 ~~~~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~ri~-~~~~d~~~---~--~~-~~D~~~~~~  181 (259)
                      .+...+|+=+|||. |..+..+++..---++++.|. ++-.+.+++. .+.+- ....++.+   .  .+ ++|+++-.-
T Consensus        25 ~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid~~  104 (174)
T d1jqba2          25 IEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMAG  104 (174)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEECS
T ss_pred             CCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceEEEcc
Confidence            56667777799987 888888888764447999998 6677777762 22211 11112222   1  11 488876542


Q ss_pred             hhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250          182 ILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI  217 (259)
Q Consensus       182 vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~  217 (259)
                      -     .   ...+....+.++|   +|+++++-..
T Consensus       105 g-----~---~~~~~~a~~~~~~---~G~iv~~G~~  129 (174)
T d1jqba2         105 G-----G---SETLSQAVKMVKP---GGIISNINYH  129 (174)
T ss_dssp             S-----C---TTHHHHHHHHEEE---EEEEEECCCC
T ss_pred             C-----C---HHHHHHHHHHHhc---CCEEEEEeec
Confidence            1     1   1356777888999   8999887653

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=89.85  E-value=1.2  Score=32.34  Aligned_cols=134  Identities=8%  Similarity=-0.076  Sum_probs=73.0

Q ss_pred             cCCCCeEEEecCCc-hHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEE--eCCCCC------CCC-CccEEeeh
Q 041250          112 FEGLNSLVDVGGGT-GTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYV--GGDMFK------AIS-PAYAVLLK  180 (259)
Q Consensus       112 ~~~~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~--~~d~~~------~~~-~~D~~~~~  180 (259)
                      .+...+|+=+|+|. |.++..+++.+...+++++|. ++-++.|++......+-  ..|...      ..+ ++|+++-.
T Consensus        27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~d~vi~~  106 (176)
T d1d1ta2          27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEV  106 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSCCCEEEEC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhccccceEEEEe
Confidence            56677888888875 555666677666568999998 88889998833322222  222211      012 47876654


Q ss_pred             hhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccCHHHHHHHHh
Q 041250          181 WILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAKIFA  257 (259)
Q Consensus       181 ~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~e~~~ll~  257 (259)
                      .     ...   ..+......+.+  ++|+++++-...+.....  ......+....+.....|..++..++.++++
T Consensus       107 ~-----g~~---~~~~~a~~~~~~--~~G~~v~vG~~~~~~~~~--~~~~~~~~~~~i~Gs~~G~~~~~~dip~li~  171 (176)
T d1d1ta2         107 I-----GHL---ETMIDALASCHM--NYGTSVVVGVPPSAKMLT--YDPMLLFTGRTWKGCVFGGLKSRDDVPKLVT  171 (176)
T ss_dssp             S-----CCH---HHHHHHHTTSCT--TTCEEEECSCCCTTCCEE--ECTHHHHTTCEEEECSGGGCCHHHHHHHHHH
T ss_pred             C-----Cch---HHHHHHHHHhhc--CCeEEEEEEccccccccC--CCHHHHhCCCEEEEEEEeCCCcHHHHHHHHH
Confidence            2     111   234444455544  058888877543332211  1111122233333233555666777776654

>d1xd7a_ a.4.5.55 (A:) Hypothetical protein ywnA {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Transcriptional regulator Rrf2
domain: Hypothetical protein ywnA
species: Bacillus subtilis [TaxId: 1423]

Probab=89.77  E-value=0.033  Score=39.12  Aligned_cols=54  Identities=9%  Similarity=0.053  Sum_probs=39.4

Q ss_pred             cchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCC-CCCCceeecCHhh
Q 041250           11 IPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNN-NDEEQGYVLTNAS   66 (259)
Q Consensus        11 lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~-~~~~~~y~~t~~~   66 (259)
                      ++-.|+.+ +++|.++||+.+++++..++++|+.|.-.+++.. ...+|.| +....
T Consensus         9 ~L~~la~~-~~~ss~~IA~~~~~~~~~v~kIl~~L~~aglV~s~rG~~GGy-Lar~p   63 (127)
T d1xd7a_           9 ILSLISMD-EKTSSEIIADSVNTNPVVVRRMISLLKKADILTSRAGVPGAS-LKKDP   63 (127)
T ss_dssp             HHHHHHTC-SCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEECCSSSSSCE-ESSCG
T ss_pred             HHHHHhcC-CCCCHHHHHHHhCcCHHHHHHHHHHHHHhCcccccCCCCCcc-ccCCH
Confidence            35556654 7899999999999999999999998876665433 3344556 66443

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=89.73  E-value=0.62  Score=33.26  Aligned_cols=126  Identities=14%  Similarity=0.098  Sum_probs=69.0

Q ss_pred             cCCCCeEEEecCCc-hHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeC--CCCCC----CCCccEEeehhhh
Q 041250          112 FEGLNSLVDVGGGT-GTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGG--DMFKA----ISPAYAVLLKWIL  183 (259)
Q Consensus       112 ~~~~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~--d~~~~----~~~~D~~~~~~vl  183 (259)
                      .+...+||=.|+|. |..+..+++. .+.++++.|. ++-++.+++.....-+-..  |+.+.    .++.|.++.... 
T Consensus        25 ~~~g~~vlv~G~G~iG~~a~~~a~~-~g~~v~~~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-  102 (168)
T d1rjwa2          25 AKPGEWVAIYGIGGLGHVAVQYAKA-MGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAV-  102 (168)
T ss_dssp             CCTTCEEEEECCSTTHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSC-
T ss_pred             CCCCCEEEEeecccchhhhhHHHhc-CCCeEeccCCCHHHhhhhhhcCcceecccccchhhhhcccccCCCceEEeecC-
Confidence            55667777788766 4555555555 4568999997 7777777763222222111  11111    123444443321 


Q ss_pred             ccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhc--cCccccCHHHHHHHHh
Q 041250          184 LDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVL--LTGTERDEKEWAKIFA  257 (259)
Q Consensus       184 h~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~--~~g~~rt~~e~~~ll~  257 (259)
                         .    ...+....+.++|   +|+++++-.... +..   .    ..+++.+.-.  .+...++.++|++.++
T Consensus       103 ---~----~~~~~~a~~~l~~---~G~i~~~g~~~~-~~~---~----~~~~~~~~~~~i~gs~~~~~~~~~~~l~  160 (168)
T d1rjwa2         103 ---S----KPAFQSAYNSIRR---GGACVLVGLPPE-EMP---I----PIFDTVLNGIKIIGSIVGTRKDLQEALQ  160 (168)
T ss_dssp             ---C----HHHHHHHHHHEEE---EEEEEECCCCSS-EEE---E----EHHHHHHTTCEEEECCSCCHHHHHHHHH
T ss_pred             ---C----HHHHHHHHHHhcc---CCceEecccccC-CCC---C----CHHHHHHCCcEEEEEeeCCHHHHHHHHH
Confidence               2    2457888999999   899888753211 111   1    1222222211  2455678888888765

>d1r1ta_ a.4.5.5 (A:) SmtB repressor {Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ArsR-like transcriptional regulators
domain: SmtB repressor
species: Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]

Probab=89.58  E-value=0.011  Score=39.75  Aligned_cols=60  Identities=12%  Similarity=0.166  Sum_probs=43.4

Q ss_pred             HHHHHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCC--CCceeecCH
Q 041250            3 LKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNND--EEQGYVLTN   64 (259)
Q Consensus         3 L~~a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~--~~~~y~~t~   64 (259)
                      |.--.++.|+..|..  ++.++.|||+.+|+++..+++=|+.+...+++..+.  ..-.|++++
T Consensus        20 L~~p~Rl~Il~~L~~--~~~~v~ela~~l~is~stvS~HL~~L~~aglV~~~r~G~~~~Y~l~~   81 (98)
T d1r1ta_          20 LADPNRLRLLSLLAR--SELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQGRHVYYQLQD   81 (98)
T ss_dssp             HCCHHHHHHHHHHTT--CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEESS
T ss_pred             hCCHHHHHHHHHHHc--CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEEECCEEEEEECh
Confidence            334578889999986  899999999999999999998777666555442222  223477654

>d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ROK associated domain
domain: Transcriptional regulator VC2007 N-terminal domain
species: Vibrio cholerae [TaxId: 666]

Probab=89.43  E-value=0.021  Score=35.77  Aligned_cols=45  Identities=7%  Similarity=-0.021  Sum_probs=36.9

Q ss_pred             HHHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccC
Q 041250            5 CAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSS   50 (259)
Q Consensus         5 ~a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~   50 (259)
                      ..-+..|+..|... +++|..|||+.+|+++..+.++++.|...++
T Consensus         5 ~~N~~~Il~~l~~~-g~~sr~eLa~~~glS~~Tv~~~l~~L~~~Gl   49 (71)
T d1z05a1           5 QINAGRVYKLIDQK-GPISRIDLSKESELAPASITKITRELIDAHL   49 (71)
T ss_dssp             HHHHHHHHHHHHHH-CSBCHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHc-CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCC
Confidence            33455688888875 8999999999999999999998888766554

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=88.48  E-value=0.67  Score=31.77  Aligned_cols=81  Identities=16%  Similarity=0.173  Sum_probs=52.0

Q ss_pred             CCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCCC-------CCCccEEeehhhhccCChHHHHHH
Q 041250          123 GGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKA-------ISPAYAVLLKWILLDWNDEECVKI  194 (259)
Q Consensus       123 gG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~-------~~~~D~~~~~~vlh~~~d~~~~~i  194 (259)
                      ||.|..+..+++...+-.++++|. ++..+..+  ...+.++.||..++       ...++.+++..    -+|++...+
T Consensus         6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~--~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~----~~d~~n~~~   79 (129)
T d2fy8a1           6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVL--RSGANFVHGDPTRVSDLEKANVRGARAVIVNL----ESDSETIHC   79 (129)
T ss_dssp             ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHH--HTTCEEEESCTTSHHHHHHTTCTTCSEEEECC----SSHHHHHHH
T ss_pred             ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHH--hcCccccccccCCHHHHHHhhhhcCcEEEEec----cchhhhHHH
Confidence            456789999999876667888887 66655554  34678999999873       22477766532    234444444


Q ss_pred             HHHHHHhcccCCCCcEEEE
Q 041250          195 LKKCKEAITRDGKKRKVII  213 (259)
Q Consensus       195 l~~~~~~L~p~~~gg~lli  213 (259)
                      .. ..+.+.|   ..+++.
T Consensus        80 ~~-~~r~~~~---~~~iia   94 (129)
T d2fy8a1          80 IL-GIRKIDE---SVRIIA   94 (129)
T ss_dssp             HH-HHHHHCS---SSCEEE
T ss_pred             HH-HHHHHCC---CceEEE
Confidence            44 4456777   555444

>d2hoea1 a.4.5.63 (A:10-71) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ROK associated domain
domain: N-acetylglucosamine kinase
species: Thermotoga maritima [TaxId: 2336]

Probab=87.90  E-value=0.038  Score=33.67  Aligned_cols=39  Identities=18%  Similarity=0.050  Sum_probs=33.1

Q ss_pred             CcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccC
Q 041250           10 GIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSS   50 (259)
Q Consensus        10 ~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~   50 (259)
                      .|+..|.+  +|+|-.|||+.+|+++..+.++++.+...++
T Consensus         3 ~Il~~i~~--~pisr~eLa~~~gls~~TVs~~v~~L~~~Gl   41 (62)
T d2hoea1           3 RILKRIMK--SPVSRVELAEELGLTKTTVGEIAKIFLEKGI   41 (62)
T ss_dssp             CSHHHHHH--SCBCHHHHHHHHTCCHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHH--CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence            57888887  7999999999999999999998887765443

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=87.77  E-value=1.7  Score=31.66  Aligned_cols=99  Identities=10%  Similarity=-0.006  Sum_probs=60.9

Q ss_pred             cCCCCeEEEec--CCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccC-CCCeEEEeCCCCCC----CC-CccEEeehhh
Q 041250          112 FEGLNSLVDVG--GGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESD-LVNLKYVGGDMFKA----IS-PAYAVLLKWI  182 (259)
Q Consensus       112 ~~~~~~vlDvG--gG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~ri~~~~~d~~~~----~~-~~D~~~~~~v  182 (259)
                      .+...+||=.|  ||-|.+++++++.. +.+++...- ++-.+.+++. .+.+--...++.+.    .+ ++|+|+-. +
T Consensus        29 ~~~g~~VLI~gaaGGVG~~aiQlak~~-Ga~Viat~~s~~k~~~~~~lGa~~vi~~~~~~~~~~~~~~~~gvD~vid~-v  106 (176)
T d1xa0a2          29 TPERGPVLVTGATGGVGSLAVSMLAKR-GYTVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDP-V  106 (176)
T ss_dssp             CGGGCCEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEEC-S
T ss_pred             CCCCCEEEEEeccchHHHHHHHHHHHc-CCceEEecCchHHHHHHHhcccceeeecchhHHHHHHHhhccCcCEEEEc-C
Confidence            34456677766  67888999999887 678777765 5666666652 23222222222221    12 48876653 2


Q ss_pred             hccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCC
Q 041250          183 LLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKK  223 (259)
Q Consensus       183 lh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~  223 (259)
                          ..    ..+.+..+.|+|   +|+++++-...+....
T Consensus       107 ----gg----~~~~~~l~~l~~---~Griv~~G~~~g~~~~  136 (176)
T d1xa0a2         107 ----GG----RTLATVLSRMRY---GGAVAVSGLTGGAEVP  136 (176)
T ss_dssp             ----TT----TTHHHHHHTEEE---EEEEEECSCCSSSCCC
T ss_pred             ----Cc----hhHHHHHHHhCC---CceEEEeecccCcccC
Confidence                22    247788899999   9999999886555443

>d1ylfa1 a.4.5.55 (A:5-142) Hypothetical protein BC1842 {Bacillus cereus [TaxId: 1396]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Transcriptional regulator Rrf2
domain: Hypothetical protein BC1842
species: Bacillus cereus [TaxId: 1396]

Probab=87.34  E-value=0.034  Score=39.65  Aligned_cols=46  Identities=13%  Similarity=-0.013  Sum_probs=35.3

Q ss_pred             CCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHh
Q 041250           20 KPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNA   65 (259)
Q Consensus        20 ~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~   65 (259)
                      .+.|.++||+.+++++..+.+++..|.-.+++......|.|.+...
T Consensus        22 ~~vss~~IA~~~~i~~~~l~kil~~L~~aGlv~S~rG~GG~~L~~~   67 (138)
T d1ylfa1          22 SLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGPGGAGLLKD   67 (138)
T ss_dssp             GGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC---CCEEESSC
T ss_pred             CcCcHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeecCCCCceecCC
Confidence            6799999999999999999999998877665543333477888643

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.04  E-value=3.8  Score=29.06  Aligned_cols=96  Identities=10%  Similarity=0.047  Sum_probs=61.2

Q ss_pred             cCCCCeEEEecCCc-hHHHHHHHHHCCCCeEEEeec-hHHHhhcccC-CCCeEEEeCCCCC--------CCC-CccEEee
Q 041250          112 FEGLNSLVDVGGGT-GTAAKAIAKAFPKLECTCFDL-PHVVNGLESD-LVNLKYVGGDMFK--------AIS-PAYAVLL  179 (259)
Q Consensus       112 ~~~~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~ri~~~~~d~~~--------~~~-~~D~~~~  179 (259)
                      .....+|+=+|+|. |.++..+++....-++++.|. +.-++.+++. .+.+.....+-..        ..+ ++|+++-
T Consensus        24 ~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid  103 (171)
T d1pl8a2          24 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIE  103 (171)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEE
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEe
Confidence            55667888888875 555556666665447999998 8888888873 3333322222111        012 4787765


Q ss_pred             hhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 041250          180 KWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIK  218 (259)
Q Consensus       180 ~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~  218 (259)
                      .-     ..+   ..++...+.+++   ||++++.-...
T Consensus       104 ~~-----G~~---~~~~~a~~~~~~---gG~iv~~G~~~  131 (171)
T d1pl8a2         104 CT-----GAE---ASIQAGIYATRS---GGTLVLVGLGS  131 (171)
T ss_dssp             CS-----CCH---HHHHHHHHHSCT---TCEEEECSCCC
T ss_pred             cc-----CCc---hhHHHHHHHhcC---CCEEEEEecCC
Confidence            42     222   467888889999   99998887543

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=86.96  E-value=2  Score=30.78  Aligned_cols=125  Identities=12%  Similarity=0.032  Sum_probs=71.1

Q ss_pred             cCCCCeEEEecCCc-hHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeC--CCCC-----CCC-CccEEeehh
Q 041250          112 FEGLNSLVDVGGGT-GTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGG--DMFK-----AIS-PAYAVLLKW  181 (259)
Q Consensus       112 ~~~~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~--d~~~-----~~~-~~D~~~~~~  181 (259)
                      ..+..+|+=+|+|. |..+..+++.....++++.|. ++-++.+++.... .++..  |..+     ..+ ++|+++-. 
T Consensus        30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~-~~i~~~~~~~~~~~~~~~~~g~d~vid~-  107 (172)
T d1h2ba2          30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGAD-HVVDARRDPVKQVMELTRGRGVNVAMDF-  107 (172)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCS-EEEETTSCHHHHHHHHTTTCCEEEEEES-
T ss_pred             cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccc-eeecCcccHHHHHHHhhCCCCceEEEEe-
Confidence            45567788888875 445566777666668889998 6667777763222 22221  2111     012 47876644 


Q ss_pred             hhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhc--cCccccCHHHHHHHHh
Q 041250          182 ILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVL--LTGTERDEKEWAKIFA  257 (259)
Q Consensus       182 vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~--~~g~~rt~~e~~~ll~  257 (259)
                          -...   ..++...+.+++   +|+++++-.  +.+...+       ..++.+--.  .+....+.+|++++++
T Consensus       108 ----~g~~---~~~~~a~~~l~~---~G~iv~~G~--~~~~~~~-------~~~l~~k~~~i~Gs~~~~~~d~~~~l~  166 (172)
T d1h2ba2         108 ----VGSQ---ATVDYTPYLLGR---MGRLIIVGY--GGELRFP-------TIRVISSEVSFEGSLVGNYVELHELVT  166 (172)
T ss_dssp             ----SCCH---HHHHHGGGGEEE---EEEEEECCC--SSCCCCC-------HHHHHHTTCEEEECCSCCHHHHHHHHH
T ss_pred             ----cCcc---hHHHHHHHHHhC---CCEEEEEeC--cccccCC-------HHHHHhCCcEEEEEEecCHHHHHHHHH
Confidence                2222   357888889999   999998763  2222111       122222111  2445567777777764

>d1u2wa1 a.4.5.5 (A:12-119) Cadmium efflux system accessory protein CadC {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ArsR-like transcriptional regulators
domain: Cadmium efflux system accessory protein CadC
species: Staphylococcus aureus [TaxId: 1280]

Probab=86.85  E-value=0.027  Score=38.54  Aligned_cols=63  Identities=8%  Similarity=0.087  Sum_probs=44.9

Q ss_pred             HHHHHHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCC--CCceeecCHh
Q 041250            2 TLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNND--EEQGYVLTNA   65 (259)
Q Consensus         2 aL~~a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~--~~~~y~~t~~   65 (259)
                      ||.--.++.|+..|... ++.++.|||+.+|+++..+++=|+.|...+++..+.  ..-.|++++.
T Consensus        27 aLadp~Rl~Il~~L~~~-~~~~v~ela~~l~~s~s~vS~HL~~L~~aGlv~~~r~G~~~~Y~l~~~   91 (108)
T d1u2wa1          27 AIADENRAKITYALCQD-EELCVCDIANILGVTIANASHHLRTLYKQGVVNFRKEGKLALYSLGDE   91 (108)
T ss_dssp             HHHSHHHHHHHHHHHHS-SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC----CCEEEESCH
T ss_pred             HhCCHHHHHHHHHHHhC-CCccHHHHHHHHccChhHHHHHHHHHHHCCeeEEEEECCEEEEEECHH
Confidence            45556789999998642 789999999999999999998666666555443222  2235777653

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=86.31  E-value=1.8  Score=29.49  Aligned_cols=83  Identities=14%  Similarity=0.119  Sum_probs=48.6

Q ss_pred             EEEecCCchHHHHHHHHHC--CCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCCC-------CCCccEEeehhhhccCC
Q 041250          118 LVDVGGGTGTAAKAIAKAF--PKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKA-------ISPAYAVLLKWILLDWN  187 (259)
Q Consensus       118 vlDvGgG~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~-------~~~~D~~~~~~vlh~~~  187 (259)
                      ++=+|+  |.++..+++..  -+.+++++|. ++.++.+++..  ...+.+|..++       ...+|.+++.     .+
T Consensus         3 ~iIiG~--G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~--~~~~~gd~~~~~~l~~a~i~~a~~vi~~-----~~   73 (134)
T d2hmva1           3 FAVIGL--GRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYA--THAVIANATEENELLSLGIRNFEYVIVA-----IG   73 (134)
T ss_dssp             EEEECC--SHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTC--SEEEECCTTCTTHHHHHTGGGCSEEEEC-----CC
T ss_pred             EEEECC--CHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhC--CcceeeecccchhhhccCCccccEEEEE-----cC
Confidence            444554  56666666543  3567999998 88888877433  35667888763       1247766654     33


Q ss_pred             -hHHHHHHHHHHHHhcccCCCCcEEEE
Q 041250          188 -DEECVKILKKCKEAITRDGKKRKVII  213 (259)
Q Consensus       188 -d~~~~~il~~~~~~L~p~~~gg~lli  213 (259)
                       +++...+...+++.. |   ..+++.
T Consensus        74 ~~~~~~~~~~~~~~~~-~---~~~iia   96 (134)
T d2hmva1          74 ANIQASTLTTLLLKEL-D---IPNIWV   96 (134)
T ss_dssp             SCHHHHHHHHHHHHHT-T---CSEEEE
T ss_pred             chHHhHHHHHHHHHHc-C---CCcEEe
Confidence             334444445444544 4   366554

>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Lrp/AsnC-like transcriptional regulator N-terminal domain
domain: LprA
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=86.25  E-value=0.079  Score=31.89  Aligned_cols=39  Identities=15%  Similarity=0.125  Sum_probs=31.0

Q ss_pred             HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccc
Q 041250            7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQK   46 (259)
Q Consensus         7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~   46 (259)
                      ++..|...|.++ +..|+.+||+++|+++..+.+=++.+.
T Consensus         4 ~D~kIl~~L~~n-~r~s~~~lA~~~gls~~~v~~Ri~~L~   42 (60)
T d1i1ga1           4 RDKIILEILEKD-ARTPFTEIAKKLGISETAVRKRVKALE   42 (60)
T ss_dssp             HHHHHHHHHHHC-TTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence            356678888885 789999999999999998876444443

>d2hr3a1 a.4.5.28 (A:2-146) Probable transcriptional regulator PA3067 {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Probable transcriptional regulator PA3067
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.01  E-value=0.076  Score=37.85  Aligned_cols=65  Identities=17%  Similarity=0.121  Sum_probs=46.6

Q ss_pred             HHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCC-----CCCCceeecCHhhhhhh
Q 041250            6 AFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNN-----NDEEQGYVLTNASKLLL   70 (259)
Q Consensus         6 a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~-----~~~~~~y~~t~~~~~l~   70 (259)
                      ..++.++..|...+|++|+.+||+.+++++..+.++++.+..-+++..     +...-.+.+|+.++.+.
T Consensus        34 ~~q~~vL~~L~~~~g~~t~~~La~~~~~~~~~vs~~i~~L~~~glv~r~~~~~DrR~~~i~LT~~G~~~~  103 (145)
T d2hr3a1          34 FSQLVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNL  103 (145)
T ss_dssp             HHHHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHcCCeEeeeCccchhHHHhccCHHHHHHH
Confidence            345566677765447899999999999999999999988766554421     12233589999998553

>d1z6ra1 a.4.5.63 (A:12-81) Mlc protein N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ROK associated domain
domain: Mlc protein N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=85.67  E-value=0.072  Score=33.14  Aligned_cols=43  Identities=7%  Similarity=0.008  Sum_probs=35.9

Q ss_pred             HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccC
Q 041250            7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSS   50 (259)
Q Consensus         7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~   50 (259)
                      -+..|+..|... +++|-.|||+.+|+++..+.++++.|...++
T Consensus         6 N~~~Il~~i~~~-g~~sr~eLa~~~gLS~~Tvs~iv~~L~~~gl   48 (70)
T d1z6ra1           6 NAGAVYRLIDQL-GPVSRIDLSRLAQLAPASITKIVHEMLEAHL   48 (70)
T ss_dssp             HHHHHHHHHHSS-CSCCHHHHHHHTTCCHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHc-CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence            345578888875 8999999999999999999998887765543

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=85.61  E-value=0.67  Score=33.47  Aligned_cols=84  Identities=17%  Similarity=0.151  Sum_probs=50.3

Q ss_pred             CeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeC------CCCCCCCCccEEeehhh
Q 041250          116 NSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGG------DMFKAISPAYAVLLKWI  182 (259)
Q Consensus       116 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~------d~~~~~~~~D~~~~~~v  182 (259)
                      ++|.=||+|.-..+.+..-..-+.+++++|. ++-++..++      ..+.......      |..+..+.+|++++.  
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~--   79 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIV--   79 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEEC--
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEE--
Confidence            4677789987666655433333668999998 666665543      1111111111      111123468998876  


Q ss_pred             hccCChHHHHHHHHHHHHhccc
Q 041250          183 LLDWNDEECVKILKKCKEAITR  204 (259)
Q Consensus       183 lh~~~d~~~~~il~~~~~~L~p  204 (259)
                         .+......+++.++..+++
T Consensus        80 ---v~~~~~~~~~~~i~~~l~~   98 (184)
T d1bg6a2          80 ---VPAIHHASIAANIASYISE   98 (184)
T ss_dssp             ---SCGGGHHHHHHHHGGGCCT
T ss_pred             ---EchhHHHHHHHHhhhccCC
Confidence               2333456789999999988

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=85.45  E-value=2.4  Score=28.83  Aligned_cols=80  Identities=15%  Similarity=0.172  Sum_probs=51.4

Q ss_pred             eEEEecCCchHHHHHHHHHC--CCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCCC-------CCCccEEeehhhhccC
Q 041250          117 SLVDVGGGTGTAAKAIAKAF--PKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKA-------ISPAYAVLLKWILLDW  186 (259)
Q Consensus       117 ~vlDvGgG~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~-------~~~~D~~~~~~vlh~~  186 (259)
                      +|+=+|+  |.++..+++..  .+..++++|. |+.++.+.+. -.+.++.||..++       ...+|.++..     .
T Consensus         2 ~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~-~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~-----t   73 (132)
T d1lssa_           2 YIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE-IDALVINGDCTKIKTLEDAGIEDADMYIAV-----T   73 (132)
T ss_dssp             EEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-CSSEEEESCTTSHHHHHHTTTTTCSEEEEC-----C
T ss_pred             EEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhh-hhhhhccCcccchhhhhhcChhhhhhhccc-----C
Confidence            3555554  77777777643  3568999998 8877776532 2578899999873       1247777763     3


Q ss_pred             ChHHHHHHHHHHHHhccc
Q 041250          187 NDEECVKILKKCKEAITR  204 (259)
Q Consensus       187 ~d~~~~~il~~~~~~L~p  204 (259)
                      ++++.-.+.....+.+.+
T Consensus        74 ~~d~~N~~~~~~~k~~~~   91 (132)
T d1lssa_          74 GKEEVNLMSSLLAKSYGI   91 (132)
T ss_dssp             SCHHHHHHHHHHHHHTTC
T ss_pred             CcHHHHHHHHHHHHHcCC
Confidence            333333455556667777

>d1ulya_ a.4.5.58 (A:) Hypothetical protein PH1932 {Pyrococcus horikoshii [TaxId: 53953]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Hypothetical protein PH1932
domain: Hypothetical protein PH1932
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=85.23  E-value=0.062  Score=40.26  Aligned_cols=47  Identities=15%  Similarity=0.084  Sum_probs=38.3

Q ss_pred             HHHHHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCC
Q 041250            3 LKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSG   51 (259)
Q Consensus         3 L~~a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~   51 (259)
                      |..-.+..|+..|..  +|.|+.|||+.+|+++..+++-|+.|...+++
T Consensus        16 l~~p~R~~Il~~L~~--~~~s~~ela~~lg~s~~~v~~hl~~L~~~glv   62 (190)
T d1ulya_          16 MLEDTRRKILKLLRN--KEMTISQLSEILGKTPQTIYHHIEKLKEAGLV   62 (190)
T ss_dssp             HHSHHHHHHHHHHTT--CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSE
T ss_pred             hCCHHHHHHHHHHHh--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCe
Confidence            444567889999976  89999999999999999999877776555543

>d1s6la1 a.4.5.79 (A:21-80) Alkylmercury lyase MerB {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MerB N-terminal domain-like
domain: Alkylmercury lyase MerB
species: Escherichia coli [TaxId: 562]

Probab=85.20  E-value=0.1  Score=30.93  Aligned_cols=37  Identities=16%  Similarity=0.281  Sum_probs=30.6

Q ss_pred             cchhhhcCCCCCCHHHHHHHcCCCccccccceeccccc
Q 041250           11 IPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLV   48 (259)
Q Consensus        11 lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~   48 (259)
                      ++..|.. |.|+|++.||..+|.+...+...|..+...
T Consensus         7 LLr~LA~-G~PVs~~~LA~alg~~~~eV~~aL~~~p~t   43 (60)
T d1s6la1           7 LLRELAK-GRPVSRTTLAGILDWPAERVAAVLEQATST   43 (60)
T ss_dssp             HHHHHHT-TCCBCHHHHHHHHTCCHHHHHHHHTTCCSS
T ss_pred             HHHHHhC-CCCcCHHHHHHHhCCCHHHHHHHHHhCCCc
Confidence            3456675 689999999999999999999888777644

>d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Lrp/AsnC-like transcriptional regulator N-terminal domain
domain: Putative transcriptional regulator PH1519
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=85.18  E-value=0.11  Score=31.25  Aligned_cols=38  Identities=13%  Similarity=0.093  Sum_probs=31.3

Q ss_pred             HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceecc
Q 041250            7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQ   45 (259)
Q Consensus         7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~   45 (259)
                      ++..|.+.|.++ +..|+.|||+++|+++..+.+=++.+
T Consensus         4 ~D~~Il~~L~~n-~r~s~~eiA~~l~ls~~~v~~Ri~~L   41 (60)
T d2cyya1           4 IDKKIIKILQND-GKAPLREISKITGLAESTIHERIRKL   41 (60)
T ss_dssp             HHHHHHHHHHHC-TTCCHHHHHHHHCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence            566788899986 78999999999999999887645444

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=85.17  E-value=0.99  Score=35.05  Aligned_cols=101  Identities=13%  Similarity=0.083  Sum_probs=65.6

Q ss_pred             cCCCCeEEEecCCchHHHHHHHHHC----CCC------------------------------------eEEEeec-hHHH
Q 041250          112 FEGLNSLVDVGGGTGTAAKAIAKAF----PKL------------------------------------ECTCFDL-PHVV  150 (259)
Q Consensus       112 ~~~~~~vlDvGgG~G~~~~~l~~~~----p~~------------------------------------~~~~~D~-~~~~  150 (259)
                      +.+...++|-=||+|+++++.+-..    |++                                    +.++.|+ +.++
T Consensus        48 w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai  127 (249)
T d1o9ga_          48 GDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAA  127 (249)
T ss_dssp             CCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred             CCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHH
Confidence            5667789999999999999986632    221                                    2345555 4555


Q ss_pred             hhcc---c------CCCCeEEEeCCCCCCC-------C-CccEEeehhhhc-cC------ChHHHHHHHHHHHHhcccCC
Q 041250          151 NGLE---S------DLVNLKYVGGDMFKAI-------S-PAYAVLLKWILL-DW------NDEECVKILKKCKEAITRDG  206 (259)
Q Consensus       151 ~~a~---~------~~~ri~~~~~d~~~~~-------~-~~D~~~~~~vlh-~~------~d~~~~~il~~~~~~L~p~~  206 (259)
                      +.|+   +      ..+.|.+...|+|+..       + ..++|+++--.- -.      .++...+++..+.+.++.  
T Consensus       128 ~~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~~~~p~--  205 (249)
T d1o9ga_         128 QAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPA--  205 (249)
T ss_dssp             HHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCT--
T ss_pred             HHHHHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHHHHHHHHccCCC--
Confidence            5442   1      5688999999999732       2 356777663221 12      234566788888888876  


Q ss_pred             CCcEEEEEe
Q 041250          207 KKRKVIIKD  215 (259)
Q Consensus       207 ~gg~lli~e  215 (259)
                       ...++|..
T Consensus       206 -~s~~~it~  213 (249)
T d1o9ga_         206 -HAVIAVTD  213 (249)
T ss_dssp             -TCEEEEEE
T ss_pred             -CcEEEEeC
Confidence             56666654

>d1r7ja_ a.4.5.49 (A:) Sso10a (SSO10449) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Archaeal DNA-binding protein
domain: Sso10a (SSO10449)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=84.40  E-value=0.065  Score=35.23  Aligned_cols=55  Identities=13%  Similarity=0.130  Sum_probs=44.4

Q ss_pred             CcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhhhhh
Q 041250           10 GIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASKLL   69 (259)
Q Consensus        10 ~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~~~l   69 (259)
                      +|++.+.   ++.+...|..+++++...+..++..|...|++  +..++.|.+|+.+.-+
T Consensus        10 DIL~~~~---~g~~kT~i~~~aNLs~~~~~kyl~~L~~~GLI--~~~~~~Y~iT~kG~~~   64 (90)
T d1r7ja_          10 AILEACK---SGSPKTRIMYGANLSYALTGRYIKMLMDLEII--RQEGKQYMLTKKGEEL   64 (90)
T ss_dssp             HHHHHHT---TCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSE--EEETTEEEECHHHHHH
T ss_pred             HHHHHHh---CCCCccHHHHHcCCCHHHHHHHHHHHHHCCCe--eecCCEEEECccHHHH
Confidence            3455554   35688999999999999999999998887765  5677899999999833

>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Lrp/AsnC-like transcriptional regulator N-terminal domain
domain: Transcriptional regulator LrpC
species: Bacillus subtilis [TaxId: 1423]

Probab=83.77  E-value=0.12  Score=31.34  Aligned_cols=38  Identities=16%  Similarity=0.216  Sum_probs=30.9

Q ss_pred             HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceecc
Q 041250            7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQ   45 (259)
Q Consensus         7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~   45 (259)
                      .+..|.+.|.++ +..|..+||+.+|+++..+.+=++.+
T Consensus         6 ~D~~IL~~L~~n-~r~s~~~iA~~lgis~~tv~~Ri~~L   43 (63)
T d2cfxa1           6 IDLNIIEELKKD-SRLSMRELGRKIKLSPPSVTERVRQL   43 (63)
T ss_dssp             HHHHHHHHHHHC-SCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence            456788889885 89999999999999999887644444

>d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain {Thermoplasma acidophilum [TaxId: 2303]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Ta1064 (RFK), N-terminal domain
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=83.17  E-value=0.059  Score=34.99  Aligned_cols=49  Identities=12%  Similarity=0.000  Sum_probs=37.5

Q ss_pred             CCCCHHHHHHHcCCCccccccceeccccccCCCC--CCCCceeecCHhhhh
Q 041250           20 KPMTLNELVSALTINLSKTQCFFAQQKLVSSGNN--NDEEQGYVLTNASKL   68 (259)
Q Consensus        20 ~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~--~~~~~~y~~t~~~~~   68 (259)
                      +++|+.|||+.+++++..+.+++..+..-+++..  +...-.|.+|+.+..
T Consensus        20 ~~lt~~eLa~~l~i~~~~vs~~l~~Le~~GlV~r~~D~R~~~i~LT~~G~~   70 (85)
T d3ctaa1          20 AYLTSSKLADMLGISQQSASRIIIDLEKNGYITRTVTKRGQILNITEKGLD   70 (85)
T ss_dssp             EECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHH
T ss_pred             CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeeeecccccccceECHHHHH
Confidence            6899999999999999999999988776655421  122335788988763

>d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: TrmB-like
domain: Hypothetical transcriptional regulator ST1889
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=82.66  E-value=0.045  Score=37.20  Aligned_cols=44  Identities=11%  Similarity=0.110  Sum_probs=34.5

Q ss_pred             HcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCC
Q 041250            8 QLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSG   51 (259)
Q Consensus         8 ~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~   51 (259)
                      +..|+..|-..++|+|+.|||+.+|+++..+.+.+..|...|++
T Consensus        23 ~~~iL~~L~~~~~~~t~~eLa~~~~i~~~tvs~~l~~L~~~GlV   66 (109)
T d2d1ha1          23 DVAVLLKMVEIEKPITSEELADIFKLSKTTVENSLKKLIELGLV   66 (109)
T ss_dssp             HHHHHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSE
T ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHCccHhHHHHHHHHHHHCCCE
Confidence            44566666433478999999999999999999999888766554

>d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Lrp/AsnC-like transcriptional regulator N-terminal domain
domain: Regulatory protein AsnC
species: Escherichia coli [TaxId: 562]

Probab=82.15  E-value=0.15  Score=30.82  Aligned_cols=38  Identities=11%  Similarity=0.164  Sum_probs=30.5

Q ss_pred             HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceecc
Q 041250            7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQ   45 (259)
Q Consensus         7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~   45 (259)
                      .+..|...|.++ +..|..|||+++|+++..+.+=++.+
T Consensus         6 ~D~~IL~~L~~~-~r~s~~eiA~~l~ls~~~v~~Ri~rL   43 (63)
T d2cg4a1           6 LDRGILEALMGN-ARTAYAELAKQFGVSPETIHVRVEKM   43 (63)
T ss_dssp             HHHHHHHHHHHC-TTSCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence            456688889886 78999999999999999887644433

>d2p4wa1 a.4.5.64 (A:1-194) Transcriptional regulatory protein PF1790 {Pyrococcus furiosus [TaxId: 2261]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: PF1790-like
domain: Transcriptional regulatory protein PF1790
species: Pyrococcus furiosus [TaxId: 2261]

Probab=82.14  E-value=0.063  Score=40.50  Aligned_cols=63  Identities=13%  Similarity=0.125  Sum_probs=45.6

Q ss_pred             HHHHHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCC--CCC-----CceeecCHhhh
Q 041250            3 LKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNN--NDE-----EQGYVLTNASK   67 (259)
Q Consensus         3 L~~a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~--~~~-----~~~y~~t~~~~   67 (259)
                      |.--.+..|+..|..  +|.|+.|||+.+|+++..+++=|+.|...+++..  +..     ...|.++..+.
T Consensus        12 l~~~~R~~Il~~L~~--~~~~~~ela~~l~~s~~~v~~HL~~L~~~Glv~~~~~~~~~G~~~~~y~l~~~~~   81 (194)
T d2p4wa1          12 LGNETRRRILFLLTK--RPYFVSELSRELGVGQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKGLR   81 (194)
T ss_dssp             HHSHHHHHHHHHHHH--SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTTEE
T ss_pred             hCCHHHHHHHHHHHh--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeecCCCCceEEEEecccce
Confidence            333467889999987  8999999999999999999987777655554321  111     12578877654

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=81.17  E-value=6.3  Score=27.75  Aligned_cols=94  Identities=12%  Similarity=-0.017  Sum_probs=55.7

Q ss_pred             cCCCCeEEEecCC-chHHHHHHHHHCCCCeEEEeec-hHHHhhccc-CCCCeEEE-e-CCCCC-----CCC-CccEEeeh
Q 041250          112 FEGLNSLVDVGGG-TGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-DLVNLKYV-G-GDMFK-----AIS-PAYAVLLK  180 (259)
Q Consensus       112 ~~~~~~vlDvGgG-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri~~~-~-~d~~~-----~~~-~~D~~~~~  180 (259)
                      .+...+||=+||| .|.++..+++..-..++++.|. ++-.+.+++ ..+.+--. . .+...     ..+ ++|+++-.
T Consensus        26 ~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g~D~vid~  105 (176)
T d2fzwa2          26 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFEC  105 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred             CCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCCCcEeeec
Confidence            5666777777654 5667777788776667888887 667777776 22322111 0 11111     012 48887754


Q ss_pred             hhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250          181 WILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM  216 (259)
Q Consensus       181 ~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~  216 (259)
                           ...+   ..++.+...+++   ||.++++-.
T Consensus       106 -----~G~~---~~~~~~~~~~~~---g~~~~~v~~  130 (176)
T d2fzwa2         106 -----IGNV---KVMRAALEACHK---GWGVSVVVG  130 (176)
T ss_dssp             -----SCCH---HHHHHHHHTBCT---TTCEEEECS
T ss_pred             -----CCCH---HHHHHHHHhhcC---CceeEEEEe
Confidence                 2222   457777888888   777665543

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=80.87  E-value=7.3  Score=27.70  Aligned_cols=99  Identities=8%  Similarity=-0.125  Sum_probs=59.5

Q ss_pred             cCCCCeEEEecCCc-hHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEE--EeCCCCC------CCC-CccEEeeh
Q 041250          112 FEGLNSLVDVGGGT-GTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKY--VGGDMFK------AIS-PAYAVLLK  180 (259)
Q Consensus       112 ~~~~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~--~~~d~~~------~~~-~~D~~~~~  180 (259)
                      .+...+|+=+|+|. |..+..+++.....++++.|. ++-++.+++......+  ...|...      ..+ ++|+++-.
T Consensus        25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~vid~  104 (174)
T d1p0fa2          25 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVEC  104 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCCcEEEEc
Confidence            66678899899875 455556677766668999998 7778888863322222  2223211      011 47877654


Q ss_pred             hhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecC
Q 041250          181 WILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKEN  220 (259)
Q Consensus       181 ~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~  220 (259)
                      -     ..   ...+.+....+++  ++|+++++-...++
T Consensus       105 ~-----g~---~~~~~~~~~~~~~--~~G~~v~vG~~~~~  134 (174)
T d1p0fa2         105 A-----GR---IETMMNALQSTYC--GSGVTVVLGLASPN  134 (174)
T ss_dssp             S-----CC---HHHHHHHHHTBCT--TTCEEEECCCCCTT
T ss_pred             C-----CC---chHHHHHHHHHHH--hcCceEEEEEecCc
Confidence            2     11   2456666666655  15888888764443

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=80.27  E-value=3.7  Score=29.33  Aligned_cols=91  Identities=14%  Similarity=0.030  Sum_probs=57.3

Q ss_pred             cCCCCeEEEec--CCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccC-CCCeEE-EeCCCCCC-----CC-CccEEeeh
Q 041250          112 FEGLNSLVDVG--GGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESD-LVNLKY-VGGDMFKA-----IS-PAYAVLLK  180 (259)
Q Consensus       112 ~~~~~~vlDvG--gG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~ri~~-~~~d~~~~-----~~-~~D~~~~~  180 (259)
                      +....+||=.|  ||.|.++..+++.. +.++++.+. ++-.+.+++. .+.+-. ...|+.+.     .+ ++|+++-.
T Consensus        23 ~~~g~~VlI~ga~g~vG~~~iqla~~~-g~~vi~~~~~~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~t~~~g~d~v~d~  101 (183)
T d1pqwa_          23 LSPGERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNS  101 (183)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEEC
T ss_pred             CCCCCEEEEECCCCCcccccchhhccc-cccceeeecccccccccccccccccccCCccCHHHHHHHHhCCCCEEEEEec
Confidence            56667788766  57788888888775 567776665 6667777763 232211 11123221     12 48988864


Q ss_pred             hhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250          181 WILLDWNDEECVKILKKCKEAITRDGKKRKVIIKD  215 (259)
Q Consensus       181 ~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e  215 (259)
                      -     ..    +.++.+.+.|++   +|+++.+-
T Consensus       102 ~-----g~----~~~~~~~~~l~~---~G~~v~~G  124 (183)
T d1pqwa_         102 L-----AG----EAIQRGVQILAP---GGRFIELG  124 (183)
T ss_dssp             C-----CT----HHHHHHHHTEEE---EEEEEECS
T ss_pred             c-----cc----hHHHHHHHHhcC---CCEEEEEc
Confidence            2     22    246777889999   89988874

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=80.03  E-value=4.7  Score=28.12  Aligned_cols=101  Identities=15%  Similarity=0.096  Sum_probs=53.2

Q ss_pred             CCCeEEEecCCc-hHHHHH-HHHHCCCCeEEEeechHHHhh--------cccCCCCeEEEeCCCCCCCCCccEEeehhhh
Q 041250          114 GLNSLVDVGGGT-GTAAKA-IAKAFPKLECTCFDLPHVVNG--------LESDLVNLKYVGGDMFKAISPAYAVLLKWIL  183 (259)
Q Consensus       114 ~~~~vlDvGgG~-G~~~~~-l~~~~p~~~~~~~D~~~~~~~--------a~~~~~ri~~~~~d~~~~~~~~D~~~~~~vl  183 (259)
                      +..+|.=||+|. |..... ++.+.---+++++|+.+....        +...........+|+. ...++|++++.--.
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~~-~~~~adivvitag~   82 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYS-DCKDADLVVITAGA   82 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGG-GGTTCSEEEECCCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccHH-HhccccEEEEeccc
Confidence            445788899766 433333 333322237999998332111        1113344556677753 44568988886433


Q ss_pred             ccCCh-------HHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250          184 LDWND-------EECVKILKKCKEAITRDGKKRKVIIKD  215 (259)
Q Consensus       184 h~~~d-------~~~~~il~~~~~~L~p~~~gg~lli~e  215 (259)
                      ..-+.       ....++++++.+.++...|.+.++++.
T Consensus        83 ~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvt  121 (146)
T d1ez4a1          83 PQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAA  121 (146)
T ss_dssp             ----------CHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeC
Confidence            22221       223556777776665434478766643