Citrus Sinensis ID: 041277
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1133 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LHD1 | 1240 | ABC transporter B family | yes | no | 0.978 | 0.894 | 0.760 | 0.0 | |
| Q9LSJ2 | 1229 | ABC transporter B family | no | no | 0.979 | 0.903 | 0.693 | 0.0 | |
| Q9LSJ6 | 1240 | ABC transporter B family | no | no | 0.970 | 0.887 | 0.686 | 0.0 | |
| Q9LSJ5 | 1225 | ABC transporter B family | no | no | 0.976 | 0.902 | 0.684 | 0.0 | |
| Q6YUU5 | 1245 | Putative multidrug resist | yes | no | 0.978 | 0.890 | 0.691 | 0.0 | |
| Q9LSJ8 | 1228 | ABC transporter B family | no | no | 0.977 | 0.901 | 0.672 | 0.0 | |
| Q9LHK4 | 1241 | Putative ABC transporter | no | no | 0.983 | 0.897 | 0.477 | 0.0 | |
| Q9LJX0 | 1252 | ABC transporter B family | no | no | 0.990 | 0.896 | 0.461 | 0.0 | |
| Q9ZR72 | 1286 | ABC transporter B family | no | no | 0.979 | 0.863 | 0.436 | 0.0 | |
| Q8LPK2 | 1273 | ABC transporter B family | no | no | 0.981 | 0.873 | 0.426 | 0.0 |
| >sp|Q9LHD1|AB15B_ARATH ABC transporter B family member 15 OS=Arabidopsis thaliana GN=ABCB15 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 1710 bits (4428), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 849/1116 (76%), Positives = 971/1116 (87%), Gaps = 7/1116 (0%)
Query: 19 GSFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHN 78
GS RSIFMHADGVD LM LG IGA+GDGF+TPLVL +TSK MNNIGG S+ D F +
Sbjct: 18 GSVRSIFMHADGVDWLLMGLGLIGAVGDGFTTPLVLLITSKLMNNIGG-SSFNTDTFMQS 76
Query: 79 INKNTVHLLYLALGSWVACFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTST 138
I+KN+V LLY+A GSWV CFLEGYCWTRTGERQ RMR +YL+AVLRQDVGYFDLHVTST
Sbjct: 77 ISKNSVALLYVACGSWVVCFLEGYCWTRTGERQTARMREKYLRAVLRQDVGYFDLHVTST 136
Query: 139 AEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLWRLAIVGFPFVVLLVIP 198
++VITSVS+DS VIQD +SEKLPNF+M+AS F G Y+V F++LWRLAIVG PF+VLLVIP
Sbjct: 137 SDVITSVSSDSFVIQDVLSEKLPNFLMSASTFVGSYIVGFILLWRLAIVGLPFIVLLVIP 196
Query: 199 GLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLG 258
GLMYGR L+S++RK+R+EYN+AG +AEQAISS+RTVYAF GE KTI++FS+ALQGSV+LG
Sbjct: 197 GLMYGRALISISRKIREEYNEAGFVAEQAISSVRTVYAFSGERKTISKFSTALQGSVKLG 256
Query: 259 LKQGLAKGLAIGSNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGL 318
+KQGLAKG+ IGSNG+TF +W F+ +YGSRMVMYHGAQGGTVFAV A+IA+GG++LG GL
Sbjct: 257 IKQGLAKGITIGSNGITFAMWGFMSWYGSRMVMYHGAQGGTVFAVAAAIAIGGVSLGGGL 316
Query: 319 PNLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESII 378
NLKYF EA + GERIME+I RVPKIDSD+ +G LE + GEVEFK V+F YPSR E+ I
Sbjct: 317 SNLKYFFEAASVGERIMEVINRVPKIDSDNPDGHKLEKIRGEVEFKNVKFVYPSRLETSI 376
Query: 379 FKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438
F DFCL +P+GKTVALVGGSGSGKSTVI+LLQRFY PL GEI++DGVSIDKLQ+KWLRSQ
Sbjct: 377 FDDFCLRVPSGKTVALVGGSGSGKSTVISLLQRFYDPLAGEILIDGVSIDKLQVKWLRSQ 436
Query: 439 MGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGV 498
MGLVSQEPALFAT+IKENILFGKEDASM++V+EAAKASNAHNFI QLP Y+TQVGERGV
Sbjct: 437 MGLVSQEPALFATTIKENILFGKEDASMDDVVEAAKASNAHNFISQLPNGYETQVGERGV 496
Query: 499 QMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRL 558
QMSGGQKQRIAIARAIIK+P ILLLDEATSALDSESERVVQEAL+ A +GRTTI+IAHRL
Sbjct: 497 QMSGGQKQRIAIARAIIKSPTILLLDEATSALDSESERVVQEALENASIGRTTILIAHRL 556
Query: 559 STIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQTTTPDDNNNATMHSLASKS 618
STIRNADVI+VV++G ++ETGSHDEL++ G Y++LV LQ D N + S
Sbjct: 557 STIRNADVISVVKNGHIVETGSHDELMENIDGQYSTLVHLQQIEKQDINVSVKIGPISDP 616
Query: 619 SNMDMNSTSSRRLSIVSLSSSANSFAQGRGASQSNEEDIKKLPVPSFRRLVALNAPEWKQ 678
S NS+ R+S +S SSSANS G ++ ED K +PSF+RL+A+N PEWKQ
Sbjct: 617 SKDIRNSS---RVSTLSRSSSANSVT-GPSTIKNLSED-NKPQLPSFKRLLAMNLPEWKQ 671
Query: 679 ATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINI 738
A GC+ ATLFGA+QP YA+++GSM+SVYFLT HDEIK+KT IYA F+GLAV + +INI
Sbjct: 672 ALYGCISATLFGAIQPAYAYSLGSMVSVYFLTSHDEIKEKTRIYALSFVGLAVLSFLINI 731
Query: 739 IQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGD 798
QHYNFAYMGE+LTKRIRERMLSK+LTFEVGWFD+DENSSGAICSRLAKDANVVRSLVGD
Sbjct: 732 SQHYNFAYMGEYLTKRIRERMLSKVLTFEVGWFDRDENSSGAICSRLAKDANVVRSLVGD 791
Query: 799 RTALLVQTISAVTIAFTMGLFIAWRLALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQA 858
R AL+VQT+SAVTIAFTMGL IAWRLALVMIAVQP++I+CFY RRVLLKSMS KAIKAQ
Sbjct: 792 RMALVVQTVSAVTIAFTMGLVIAWRLALVMIAVQPVIIVCFYTRRVLLKSMSKKAIKAQD 851
Query: 859 ESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSWYAGIGLAFSQSLASC 918
ESSKLAAEAVSN+RTITAFSSQ RI+KMLEKAQ+ PRRESIRQSW+AG GLA SQSL SC
Sbjct: 852 ESSKLAAEAVSNVRTITAFSSQERIMKMLEKAQESPRRESIRQSWFAGFGLAMSQSLTSC 911
Query: 919 TWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAV 978
TWALDFWYGGRLI DGYI++KALFETFMILVSTGRVIADAGSMTTD+AKGSDAVGSVFAV
Sbjct: 912 TWALDFWYGGRLIQDGYITAKALFETFMILVSTGRVIADAGSMTTDLAKGSDAVGSVFAV 971
Query: 979 MDRYTKIEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQ 1038
+DRYT I+PEDP+G++ ERITG +E +V F+YP RPDV+IF+ FSIKIE GKSTA+VG
Sbjct: 972 LDRYTSIDPEDPDGYETERITGQVEFLDVDFSYPTRPDVIIFKNFSIKIEEGKSTAIVGP 1031
Query: 1039 SGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENI 1098
SGSGKSTIIGLIERFYDPLKG VKID RDIRSYHLRSLRRHIALVSQEPTLFAGTIRENI
Sbjct: 1032 SGSGKSTIIGLIERFYDPLKGIVKIDGRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENI 1091
Query: 1099 AYGA-SDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133
YG SD+IDE+EI+EAAKAANAHDFI L EGYDT
Sbjct: 1092 IYGGVSDKIDEAEIIEAAKAANAHDFITSLTEGYDT 1127
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSJ2|AB22B_ARATH ABC transporter B family member 22 OS=Arabidopsis thaliana GN=ABCB22 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 1600 bits (4142), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 775/1117 (69%), Positives = 932/1117 (83%), Gaps = 7/1117 (0%)
Query: 19 GSFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHN 78
GS RSIFMHA+ VD+ LM LG IGA+GDGF TP++ F+T +N+IG S+ F H
Sbjct: 5 GSVRSIFMHANSVDLVLMGLGLIGAVGDGFITPIIFFITGLLLNDIGD-SSFGDKTFMHA 63
Query: 79 INKNTVHLLYLALGSWVACFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTST 138
I KN V LLY+A S V CF+EGYCWTRTGERQA+RMR +YL+AVLRQDVGYFDLHVTST
Sbjct: 64 IMKNAVALLYVAGASLVICFVEGYCWTRTGERQASRMREKYLRAVLRQDVGYFDLHVTST 123
Query: 139 AEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLWRLAIVGFPFVVLLVIP 198
++VITSVS+D+LVIQD +SEKLPNF+M+AS F Y+V F+MLWRL IVGFPF +LL+IP
Sbjct: 124 SDVITSVSSDTLVIQDVLSEKLPNFLMSASAFVASYIVGFIMLWRLTIVGFPFFILLLIP 183
Query: 199 GLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLG 258
GLM GR L++++RK+R+EYN+AG+IAEQAIS +RTVYAF E K I++FS+AL+GSV+LG
Sbjct: 184 GLMCGRALINISRKIREEYNEAGSIAEQAISLVRTVYAFGSERKMISKFSAALEGSVKLG 243
Query: 259 LKQGLAKGLAIGSNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGL 318
L+QG+AKG+AIGSNGVT+ IW F+ +YGSRMVMYHGA+GGT+FAV I GG +LG GL
Sbjct: 244 LRQGIAKGIAIGSNGVTYAIWGFMTWYGSRMVMYHGAKGGTIFAVIICITYGGTSLGRGL 303
Query: 319 PNLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESII 378
NLKYFSEA+ AGERI+E+IKRVP IDSD+ G++LEN+ GEV+FK V+F Y SRPE+ I
Sbjct: 304 SNLKYFSEAVVAGERIIEVIKRVPDIDSDNPRGQVLENIKGEVQFKHVKFMYSSRPETPI 363
Query: 379 FKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438
F D CL IP+GK+VALVGGSGSGKSTVI+LLQRFY P+ GEI++DGVSI KLQ+KWLRSQ
Sbjct: 364 FDDLCLRIPSGKSVALVGGSGSGKSTVISLLQRFYDPIVGEILIDGVSIKKLQVKWLRSQ 423
Query: 439 MGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGV 498
MGLVSQEPALFATSI+ENILFGKEDAS +EV+EAAK+SNAH+FI Q P Y TQVGERGV
Sbjct: 424 MGLVSQEPALFATSIEENILFGKEDASFDEVVEAAKSSNAHDFISQFPLGYKTQVGERGV 483
Query: 499 QMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRL 558
QMSGGQKQRI+IARAIIK+P +LLLDEATSALDSESERVVQEALD A +GRTTI+IAHRL
Sbjct: 484 QMSGGQKQRISIARAIIKSPTLLLLDEATSALDSESERVVQEALDNATIGRTTIVIAHRL 543
Query: 559 STIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQTTTPDD-NNNATMHSLASK 617
STIRN DVI V ++GQ++ETGSH+EL++ G YTSLVRLQ ++ N+N ++ +
Sbjct: 544 STIRNVDVICVFKNGQIVETGSHEELMENVDGQYTSLVRLQIMENEESNDNVSVSMREGQ 603
Query: 618 SSNMDMNSTSSRRLSIVSLSSSANSFAQGRGASQSNEEDIKKLPVPSFRRLVALNAPEWK 677
SN + + S RLSI S SS + + + S +D K PSF+RL+A+N PEWK
Sbjct: 604 FSNFNKDVKYSSRLSIQSRSSLFATSSIDTNLAGSIPKDKK----PSFKRLMAMNKPEWK 659
Query: 678 QATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVIN 737
A GC+ A L+GA+ PIYA+A GSM+SVYFLT HDE+K+KT IY F+GLAV +I+
Sbjct: 660 HALYGCLSAVLYGALHPIYAYASGSMVSVYFLTSHDEMKEKTRIYVLLFVGLAVLCFLIS 719
Query: 738 IIQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVG 797
IIQ Y+FAYMGE+LTKRIRE +LSK+LTFEV WFD+DENSSG+ICSRLAKDANVVRSLVG
Sbjct: 720 IIQQYSFAYMGEYLTKRIRENILSKLLTFEVSWFDEDENSSGSICSRLAKDANVVRSLVG 779
Query: 798 DRTALLVQTISAVTIAFTMGLFIAWRLALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQ 857
+R +LLVQTISAV++A T+GL I+W+L++VMIA+QP+V+ CFY +R++LKS+S KAIKAQ
Sbjct: 780 ERVSLLVQTISAVSVACTLGLAISWKLSIVMIAIQPVVVGCFYTQRIVLKSISKKAIKAQ 839
Query: 858 AESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSWYAGIGLAFSQSLAS 917
ESSKLAAEAVSN+RTITAFSSQ RILK+L+ Q+GP+RE+IRQSW AGI LA S+SL +
Sbjct: 840 DESSKLAAEAVSNIRTITAFSSQERILKLLKMVQEGPQRENIRQSWLAGIVLATSRSLMT 899
Query: 918 CTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFA 977
CT AL++WYG RLI DG I+SKA FE F++ VSTGRVIADAG+MT D+AKGSDAVGSVFA
Sbjct: 900 CTSALNYWYGARLIIDGKITSKAFFELFILFVSTGRVIADAGAMTMDLAKGSDAVGSVFA 959
Query: 978 VMDRYTKIEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVG 1037
V+DRYT IEPE P+G P+ I G I+ NV FAYP RPDV+IF+ FSI I+ GKSTA+VG
Sbjct: 960 VLDRYTNIEPEKPDGFVPQNIKGQIKFVNVDFAYPTRPDVIIFKNFSIDIDEGKSTAIVG 1019
Query: 1038 QSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIREN 1097
SGSGKSTIIGLIERFYDPLKG VKID RDIRSYHLRSLR+HI LVSQEP LFAGTIREN
Sbjct: 1020 PSGSGKSTIIGLIERFYDPLKGIVKIDGRDIRSYHLRSLRQHIGLVSQEPILFAGTIREN 1079
Query: 1098 IAY-GASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133
I Y GASD+IDESEI+EAAKAANAHDFI L++GYDT
Sbjct: 1080 IMYGGASDKIDESEIIEAAKAANAHDFIVTLSDGYDT 1116
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSJ6|AB17B_ARATH ABC transporter B family member 17 OS=Arabidopsis thaliana GN=ABCB17 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1595 bits (4130), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 772/1125 (68%), Positives = 925/1125 (82%), Gaps = 25/1125 (2%)
Query: 19 GSFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHN 78
GS RSIFMHADGVD LM LG IGA+GDGF TP+V+F+ + +NN+G S+ F
Sbjct: 18 GSIRSIFMHADGVDWILMALGLIGAVGDGFITPVVVFIFNTLLNNLG-TSSSNNKTFMQT 76
Query: 79 INKNTVHLLYLALGSWVACFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTST 138
I+KN V LLY+A GSWV CFLEGYCWTRTGERQA RMR +YL+AVLRQDVGYFDLHVTST
Sbjct: 77 ISKNVVALLYVACGSWVICFLEGYCWTRTGERQAARMREKYLRAVLRQDVGYFDLHVTST 136
Query: 139 AEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLWRLAIVGFPFVVLLVIP 198
++VITS+S+DSLVIQD +SEKLPNF+MNAS F Y+V+F+++WRL IVGFPF++LL++P
Sbjct: 137 SDVITSISSDSLVIQDFLSEKLPNFLMNASAFVASYIVSFILMWRLTIVGFPFIILLLVP 196
Query: 199 GLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLG 258
GLMYGR L+S++RK+ ++YN+AG+IAEQAISS+RTVYAF E+K I +FS+AL+GSV+LG
Sbjct: 197 GLMYGRALVSISRKIHEQYNEAGSIAEQAISSVRTVYAFGSENKMIGKFSTALRGSVKLG 256
Query: 259 LKQGLAKGLAIGSNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGL 318
L+QGLAKG+ IGSNGVT IW+FL +YGSR+VM HG++GGTVF V + I GG++LG L
Sbjct: 257 LRQGLAKGITIGSNGVTHAIWAFLTWYGSRLVMNHGSKGGTVFVVISCITYGGVSLGQSL 316
Query: 319 PNLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESII 378
NLKYFSEA A ERI+E+IKRVP IDS+ EG+ILE + GEVEF V+F Y SRPE+ I
Sbjct: 317 SNLKYFSEAFVAWERILEVIKRVPDIDSNKKEGQILERMKGEVEFNHVKFTYLSRPETTI 376
Query: 379 FKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438
F D CL IPAGKTVALVGGSGSGKSTVI+LLQRFY P+ GEI++DGVSIDKLQ+ WLRSQ
Sbjct: 377 FDDLCLKIPAGKTVALVGGSGSGKSTVISLLQRFYDPIAGEILIDGVSIDKLQVNWLRSQ 436
Query: 439 MGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGV 498
MGLVSQEP LFATSI ENILFGKEDAS++EV+EAAKASNAH FI Q P Y TQVGERGV
Sbjct: 437 MGLVSQEPVLFATSITENILFGKEDASLDEVVEAAKASNAHTFISQFPLGYKTQVGERGV 496
Query: 499 QMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRL 558
QMSGGQKQRIAIARAIIK+P+ILLLDEATSALDSESERVVQE+LD A +GRTTI+IAHRL
Sbjct: 497 QMSGGQKQRIAIARAIIKSPKILLLDEATSALDSESERVVQESLDNASIGRTTIVIAHRL 556
Query: 559 STIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQTTTPDDNNNATMHSLASKS 618
STIRNADVI V+ +GQ++ETGSH+EL++ G YTSLV LQ + ++
Sbjct: 557 STIRNADVICVIHNGQIVETGSHEELLKRIDGQYTSLVSLQ-------------QMENEE 603
Query: 619 SNMDMNSTSSRRLSIVSLS-----SSANSFAQGRGASQSNEEDI----KKLPVPSFRRLV 669
SN+++N + ++ ++SLS S NS + +N D+ + VPSF RL+
Sbjct: 604 SNVNINVSVTKD-QVMSLSKDFKYSQHNSIGSTSSSIVTNVSDLIPNDNQPLVPSFTRLM 662
Query: 670 ALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGL 729
+N PEWK A GC+ A L G +QP+ A++ GS+ISV+FLT HD+IK+KT IY F+GL
Sbjct: 663 VMNRPEWKHALYGCLSAALVGVLQPVSAYSAGSVISVFFLTSHDQIKEKTRIYVLLFVGL 722
Query: 730 AVFTLVINIIQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDA 789
A+F+ ++NI QHY FAYMGE+LTKRIRE+MLSKILTFEV WFD D+NSSGAICSRLAKDA
Sbjct: 723 AIFSFLVNISQHYGFAYMGEYLTKRIREQMLSKILTFEVNWFDIDDNSSGAICSRLAKDA 782
Query: 790 NVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWRLALVMIAVQPLVIICFYARRVLLKSM 849
NVVRS+VGDR +LLVQTISAV IA +GL IAWRLA+VMI+VQPL+++CFY +RVLLKS+
Sbjct: 783 NVVRSMVGDRMSLLVQTISAVIIACIIGLVIAWRLAIVMISVQPLIVVCFYTQRVLLKSL 842
Query: 850 SNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSWYAGIGL 909
S KA KAQ ESSKLAAEAVSN+RTITAFSSQ RI+K+L+K Q+GPRRES+ +SW AGI L
Sbjct: 843 SEKASKAQDESSKLAAEAVSNIRTITAFSSQERIIKLLKKVQEGPRRESVHRSWLAGIVL 902
Query: 910 AFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGS 969
S+SL +CT AL+FWYGGRLIADG I SKA FE F+I V+TGRVIADAG+MTTD+A+G
Sbjct: 903 GTSRSLITCTSALNFWYGGRLIADGKIVSKAFFEIFLIFVTTGRVIADAGTMTTDLARGL 962
Query: 970 DAVGSVFAVMDRYTKIEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEA 1029
DAVGSVFAV+DR T IEP++P+G+ E+I G I NV FAYP RPDV+IFE FSI+I+
Sbjct: 963 DAVGSVFAVLDRCTTIEPKNPDGYVAEKIKGQITFLNVDFAYPTRPDVVIFENFSIEIDE 1022
Query: 1030 GKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTL 1089
GKSTA+VG SGSGKSTIIGLIERFYDPLKG VKID RDIRSYHLRSLR++I+LVSQEP L
Sbjct: 1023 GKSTAIVGTSGSGKSTIIGLIERFYDPLKGTVKIDGRDIRSYHLRSLRKYISLVSQEPML 1082
Query: 1090 FAGTIRENIAYGA-SDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133
FAGTIRENI YG SD+IDESEI+EAAKAANAHDFI L+ GYDT
Sbjct: 1083 FAGTIRENIMYGGTSDKIDESEIIEAAKAANAHDFITSLSNGYDT 1127
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSJ5|AB18B_ARATH ABC transporter B family member 18 OS=Arabidopsis thaliana GN=ABCB18 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1590 bits (4118), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 764/1116 (68%), Positives = 914/1116 (81%), Gaps = 10/1116 (0%)
Query: 19 GSFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHN 78
GS RSIFMHADGVD LM LG IGA+GDGF TP++ F+ SK +NN+GG S+ + F
Sbjct: 6 GSIRSIFMHADGVDWMLMALGLIGAVGDGFITPIIFFICSKLLNNVGG-SSFDDETFMQT 64
Query: 79 INKNTVHLLYLALGSWVACFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTST 138
+ KN V L+Y+A SWV CF+EGYCWTRTGERQA +MR +YLKAVLRQDVGYFDLHVTST
Sbjct: 65 VAKNAVALVYVACASWVICFIEGYCWTRTGERQAAKMREKYLKAVLRQDVGYFDLHVTST 124
Query: 139 AEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLWRLAIVGFPFVVLLVIP 198
++VITSVS+DSLVIQD +SEKLPNF+MN S F Y+V FL+LWRL IVGFPF++LL+IP
Sbjct: 125 SDVITSVSSDSLVIQDFLSEKLPNFLMNTSAFVASYIVGFLLLWRLTIVGFPFIILLLIP 184
Query: 199 GLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLG 258
GLMYGR L+ ++ K+R+EYN+AG+IAEQ ISS+RTVYAF E K I +FS+ALQGSV+LG
Sbjct: 185 GLMYGRALIRISMKIREEYNEAGSIAEQVISSVRTVYAFGSEKKMIEKFSTALQGSVKLG 244
Query: 259 LKQGLAKGLAIGSNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGL 318
L+QGLAKG+AIGSNG+T+ IW FL +YGSRMVM HG++GGTV +V + GG +LG L
Sbjct: 245 LRQGLAKGIAIGSNGITYAIWGFLTWYGSRMVMNHGSKGGTVSSVIVCVTFGGTSLGQSL 304
Query: 319 PNLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESII 378
NLKYFSEA GERIM++I RVP IDSD++EG+ILE GEVEF V+F YPSRPE+ I
Sbjct: 305 SNLKYFSEAFVVGERIMKVINRVPGIDSDNLEGQILEKTRGEVEFNHVKFTYPSRPETPI 364
Query: 379 FKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438
F D CL +P+GKTVALVGGSGSGKSTVI+LLQRFY P+ GEI++DG+ I+KLQ+KWLRSQ
Sbjct: 365 FDDLCLRVPSGKTVALVGGSGSGKSTVISLLQRFYDPIAGEILIDGLPINKLQVKWLRSQ 424
Query: 439 MGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGV 498
MGLVSQEP LFATSIKENILFGKEDASM+EV+EAAKASNAH+FI Q P Y TQVGERGV
Sbjct: 425 MGLVSQEPVLFATSIKENILFGKEDASMDEVVEAAKASNAHSFISQFPNSYQTQVGERGV 484
Query: 499 QMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRL 558
Q+SGGQKQRIAIARAIIK+P ILLLDEATSALDSESERVVQEALD A +GRTTI+IAHRL
Sbjct: 485 QLSGGQKQRIAIARAIIKSPIILLLDEATSALDSESERVVQEALDNASIGRTTIVIAHRL 544
Query: 559 STIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQTTTPDDNNNATMHSLASKS 618
STIRNADVI VV +G+++ETGSH+EL++ G YTSLVRLQ ++++ ++ + S
Sbjct: 545 STIRNADVICVVHNGRIIETGSHEELLEKLDGQYTSLVRLQQVDNKESDHISVEEGQASS 604
Query: 619 SNMDMNSTSSRRLSIVSLSSSANSFAQGRGASQSNEEDIKKLPVPSFRRLVALNAPEWKQ 678
+ D+ + + S+S+N R + +D K L VPSF+RL+++N PEWK
Sbjct: 605 LSKDLKYSPKEFIH----STSSNIV---RDFPNLSPKDGKSL-VPSFKRLMSMNRPEWKH 656
Query: 679 ATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINI 738
A GC+GA LFGAVQPIY+++ GSM+SVYFL HD+IK+KT IY F+GLA+FT + NI
Sbjct: 657 ALYGCLGAALFGAVQPIYSYSSGSMVSVYFLASHDQIKEKTRIYVLLFVGLALFTFLSNI 716
Query: 739 IQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGD 798
QHY FAYMGE+LTKRIRERML KILTFEV WFD+DENSSGAICSRLAKDAN+VRSLVGD
Sbjct: 717 SQHYGFAYMGEYLTKRIRERMLGKILTFEVNWFDKDENSSGAICSRLAKDANMVRSLVGD 776
Query: 799 RTALLVQTISAVTIAFTMGLFIAWRLALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQA 858
R +LLVQTISAV+I +GL I+WR ++VM++VQP++++CFY +RVLLKSMS AIK Q
Sbjct: 777 RMSLLVQTISAVSITCAIGLVISWRFSIVMMSVQPVIVVCFYTQRVLLKSMSRNAIKGQD 836
Query: 859 ESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSWYAGIGLAFSQSLASC 918
ESSKLAAEAVSN+RTITAFSSQ RI+ +L+ Q+GPR++S RQSW AGI L SQSL +C
Sbjct: 837 ESSKLAAEAVSNIRTITAFSSQERIINLLKMVQEGPRKDSARQSWLAGIMLGTSQSLITC 896
Query: 919 TWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAV 978
AL+FWYGG+LIADG + SK E F+I STGRVIA+AG+MT D+ KGSDAV SVFAV
Sbjct: 897 VSALNFWYGGKLIADGKMMSKEFLEIFLIFASTGRVIAEAGTMTKDLVKGSDAVASVFAV 956
Query: 979 MDRYTKIEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQ 1038
+DR T IEPE+P+G+ P+++ G I NV FAYP RPDV+IF+ FSI IE GKSTA+VG
Sbjct: 957 LDRNTTIEPENPDGYVPKKVKGQISFSNVDFAYPTRPDVIIFQNFSIDIEDGKSTAIVGP 1016
Query: 1039 SGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENI 1098
SGSGKSTII LIERFYDPLKG VKID RDIRS HLRSLR+HIALVSQEPTLFAGTIRENI
Sbjct: 1017 SGSGKSTIISLIERFYDPLKGIVKIDGRDIRSCHLRSLRQHIALVSQEPTLFAGTIRENI 1076
Query: 1099 AY-GASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133
Y GAS++IDESEI+EAAKAANAHDFI L+ GYDT
Sbjct: 1077 MYGGASNKIDESEIIEAAKAANAHDFITSLSNGYDT 1112
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q6YUU5|MDR_ORYSJ Putative multidrug resistance protein OS=Oryza sativa subsp. japonica GN=Os02g0190300 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1577 bits (4083), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 770/1114 (69%), Positives = 934/1114 (83%), Gaps = 5/1114 (0%)
Query: 20 SFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNI 79
SF ++FMHAD D+ LMVLG +GA+GDG STP++L +TS+ N++G +++ + F+ +
Sbjct: 19 SFMTVFMHADAADVALMVLGLLGAMGDGISTPVMLLITSRIFNDLGSGADI-VKEFSSKV 77
Query: 80 NKNTVHLLYLALGSWVACFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTA 139
N N +L++LA SWV FLEGYCW RT ERQA+RMRARYL+AVLRQDV YFDL STA
Sbjct: 78 NVNARNLVFLAAASWVMAFLEGYCWARTAERQASRMRARYLRAVLRQDVEYFDLKKGSTA 137
Query: 140 EVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLWRLAIVGFPFVVLLVIPG 199
EVITSVSNDSLV+QD +SEK+PNFVMNA++F G Y V F +LWRL +V P VVLL+IPG
Sbjct: 138 EVITSVSNDSLVVQDVLSEKVPNFVMNAAMFAGSYAVGFALLWRLTLVALPSVVLLIIPG 197
Query: 200 LMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGL 259
MYGR L+ LAR++R++Y + G IAEQA+SS RTVY+FV E T+ +FS+AL+ S +LGL
Sbjct: 198 FMYGRILVGLARRIREQYTRPGAIAEQAVSSARTVYSFVAERTTMAQFSAALEESARLGL 257
Query: 260 KQGLAKGLAIGSNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLP 319
KQGLAKG+A+GSNG+TF IW+F +YGSR+VMYHG QGGTVFAV A+I VGGLALG+GL
Sbjct: 258 KQGLAKGIAVGSNGITFAIWAFNVWYGSRLVMYHGYQGGTVFAVSAAIVVGGLALGSGLS 317
Query: 320 NLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIF 379
N+KYFSEA +A ERI+E+I+RVPKIDS+S GE L NV GEVEF+ V+F YPSRPES IF
Sbjct: 318 NVKYFSEASSAAERILEVIRRVPKIDSESDTGEELANVTGEVEFRNVEFCYPSRPESPIF 377
Query: 380 KDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439
F L +PAG+TVALVGGSGSGKSTVIALL+RFY P GE+++DGV I +L+LKWLR+QM
Sbjct: 378 VSFNLRVPAGRTVALVGGSGSGKSTVIALLERFYDPSAGEVMVDGVDIRRLRLKWLRAQM 437
Query: 440 GLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQ 499
GLVSQEPALFATSI+ENILFGKE+A+ EEV+ AAKA+NAHNFI QLPQ YDTQVGERGVQ
Sbjct: 438 GLVSQEPALFATSIRENILFGKEEATAEEVVAAAKAANAHNFISQLPQGYDTQVGERGVQ 497
Query: 500 MSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLS 559
MSGGQKQRIAIARAI+K+P+ILLLDEATSALD+ESERVVQEALD A +GRTTI+IAHRLS
Sbjct: 498 MSGGQKQRIAIARAILKSPKILLLDEATSALDTESERVVQEALDLASMGRTTIVIAHRLS 557
Query: 560 TIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQTTTPDDNNNATMHSLASKSS 619
TIRNAD+IAV+Q G+V E G HDELI ++GLY+SLVRLQ T D+N + +S
Sbjct: 558 TIRNADIIAVMQSGEVKELGPHDELIANDNGLYSSLVRLQQTR--DSNEIDEIGVTGSTS 615
Query: 620 NMDMNSTSSRRLSIVSLSSSANSFAQGRGASQSNEEDIKKLPVPSFRRLVALNAPEWKQA 679
+ +S+ S + S S+++ + G N E KLPVPSFRRL+ LNAPEWKQA
Sbjct: 616 AVGQSSSHSMSRRFSAASRSSSARSLGDARDDDNTEK-PKLPVPSFRRLLMLNAPEWKQA 674
Query: 680 TLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINII 739
+G A +FG +QP YA+AMGSMISVYFLTDH EIK KT YA F+GLAV + +INI
Sbjct: 675 LMGSFSAVVFGGIQPAYAYAMGSMISVYFLTDHAEIKDKTRTYALIFVGLAVLSFLINIG 734
Query: 740 QHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDR 799
QHYNF MGE+LTKRIRE+ML+KILTFE+GWFD+DENSSGAICS+LAKDANVVRSLVGDR
Sbjct: 735 QHYNFGAMGEYLTKRIREQMLAKILTFEIGWFDRDENSSGAICSQLAKDANVVRSLVGDR 794
Query: 800 TALLVQTISAVTIAFTMGLFIAWRLALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAE 859
AL++QTISAV IA TMGL IAWRLALVMIAVQPL+I+CFYARRVLLKSMS K+I AQAE
Sbjct: 795 MALVIQTISAVLIACTMGLVIAWRLALVMIAVQPLIIVCFYARRVLLKSMSKKSIHAQAE 854
Query: 860 SSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSWYAGIGLAFSQSLASCT 919
SSKLAAEAVSNLRTITAFSSQ RIL++ E++Q GPR+ESIRQSW+AG+GL S SL +CT
Sbjct: 855 SSKLAAEAVSNLRTITAFSSQERILRLFEQSQDGPRKESIRQSWFAGLGLGTSMSLMTCT 914
Query: 920 WALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVM 979
WALDFWYGGRL+A+ +IS+K LF+TFMILVSTGRVIADAGSMTTD+AKG+DAV SVFAV+
Sbjct: 915 WALDFWYGGRLMAEHHISAKELFQTFMILVSTGRVIADAGSMTTDLAKGADAVASVFAVL 974
Query: 980 DRYTKIEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQS 1039
DR T+I+P++P+G++PE++ G ++++ V FAYP+RPDV+IF+GF++ I+ GKSTALVGQS
Sbjct: 975 DRETEIDPDNPQGYKPEKLKGEVDIRGVDFAYPSRPDVIIFKGFTLSIQPGKSTALVGQS 1034
Query: 1040 GSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIA 1099
GSGKSTIIGLIERFYDP++G VKID RDI++Y+LR+LRRHI LVSQEPTLFAGTIRENI
Sbjct: 1035 GSGKSTIIGLIERFYDPIRGSVKIDGRDIKAYNLRALRRHIGLVSQEPTLFAGTIRENIV 1094
Query: 1100 YGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133
YG ++ E+EI +AA++ANAHDFI+ L +GYDT
Sbjct: 1095 YG-TETASEAEIEDAARSANAHDFISNLKDGYDT 1127
|
Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q9LSJ8|AB16B_ARATH ABC transporter B family member 16 OS=Arabidopsis thaliana GN=ABCB16 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1538 bits (3982), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 751/1117 (67%), Positives = 910/1117 (81%), Gaps = 10/1117 (0%)
Query: 19 GSFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHN 78
GS RSIFMHADGVD LM LG IGA+GDGF TP++ F+T+ +N+ G S + F
Sbjct: 5 GSMRSIFMHADGVDWMLMGLGLIGAVGDGFITPILFFITAMLLNDFGSFS-FNDETFMQP 63
Query: 79 INKNTVHLLYLALGSWVACFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTST 138
I+KN + +LY+A SWV CFLEGYCWTRTGERQA +MR RYL+AVLRQDVGYFDLHVTST
Sbjct: 64 ISKNALAMLYVACASWVICFLEGYCWTRTGERQAAKMRERYLRAVLRQDVGYFDLHVTST 123
Query: 139 AEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLWRLAIVGFPFVVLLVIP 198
+++ITSVS+DSLVIQD +SEKLPN +MNAS F G Y+V F++LWRL IVGFPF++LL+IP
Sbjct: 124 SDIITSVSSDSLVIQDFLSEKLPNILMNASAFVGSYIVGFMLLWRLTIVGFPFIILLLIP 183
Query: 199 GLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLG 258
GLMYGR L+ ++RK+R+EYN+AG+IAEQAISS+RTVYAFV E K I +FS ALQGSV+LG
Sbjct: 184 GLMYGRALIGISRKIREEYNEAGSIAEQAISSVRTVYAFVSEKKMIEKFSDALQGSVKLG 243
Query: 259 LKQGLAKGLAIGSNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGL 318
L+QGLAKG+AIGSNG+ + IW FL +YGSRMVM +G +GGTV V + GG ALG L
Sbjct: 244 LRQGLAKGIAIGSNGIVYAIWGFLTWYGSRMVMNYGYKGGTVSTVTVCVTFGGTALGQAL 303
Query: 319 PNLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESII 378
NLKYFSEA AGERI +MIKRVP IDSD++ G ILE + GEVEF V+ YPSRPE++I
Sbjct: 304 SNLKYFSEAFVAGERIQKMIKRVPDIDSDNLNGHILETIRGEVEFNNVKCKYPSRPETLI 363
Query: 379 FKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438
F D CL IP+GKTVALVGGSGSGKSTVI+LLQRFY P G+I++D VSI+ +Q+KWLRSQ
Sbjct: 364 FDDLCLKIPSGKTVALVGGSGSGKSTVISLLQRFYDPNEGDILIDSVSINNMQVKWLRSQ 423
Query: 439 MGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGV 498
MG+VSQEP+LFATSIKENILFGKEDAS +EV+EAAKASNAHNFI Q P Y TQVGERGV
Sbjct: 424 MGMVSQEPSLFATSIKENILFGKEDASFDEVVEAAKASNAHNFISQFPHGYQTQVGERGV 483
Query: 499 QMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRL 558
MSGGQKQRIAIARA+IK+P ILLLDEATSALD ESERVVQEALD A VGRTTI+IAHRL
Sbjct: 484 HMSGGQKQRIAIARALIKSPIILLLDEATSALDLESERVVQEALDNASVGRTTIVIAHRL 543
Query: 559 STIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQTTTPDDN-NNATMHSLASK 617
STIRNAD+I V+ +G ++ETGSHD+L++ + G YTSLVRLQ +++ +N ++ +
Sbjct: 544 STIRNADIICVLHNGCIVETGSHDKLMEID-GKYTSLVRLQQMKNEESCDNTSVGVKEGR 602
Query: 618 SSNMDMNSTSSRRLSIVSLSSSANSFAQGRGASQSNEEDIKKLPVPSFRRLVALNAPEWK 677
S++ + + R S+SSS + S S +D K L VPSF+RL+A+N PEWK
Sbjct: 603 VSSLRNDLDYNPRDLAHSMSSSIVT-----NLSDSIPQDKKPL-VPSFKRLMAMNRPEWK 656
Query: 678 QATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVIN 737
A GC+ A+L GAVQPIYA++ G MISV+FLT+H++IK+ T IY F GLA+FT +
Sbjct: 657 HALCGCLSASLGGAVQPIYAYSSGLMISVFFLTNHEQIKENTRIYVLLFFGLALFTFFTS 716
Query: 738 IIQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVG 797
I Q Y+F+YMGE+LTKRIRE+MLSKILTFEV WFD++ENSSGAICSRLAKDANVVRSLVG
Sbjct: 717 ISQQYSFSYMGEYLTKRIREQMLSKILTFEVNWFDEEENSSGAICSRLAKDANVVRSLVG 776
Query: 798 DRTALLVQTISAVTIAFTMGLFIAWRLALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQ 857
+R +LLVQTIS V +A T+GL IAWR +VMI+VQP++I+C+Y +RVLLK+MS KAI AQ
Sbjct: 777 ERMSLLVQTISTVMVACTIGLVIAWRFTIVMISVQPVIIVCYYIQRVLLKNMSKKAIIAQ 836
Query: 858 AESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSWYAGIGLAFSQSLAS 917
ESSKLAAEAVSN+RTIT FSSQ RI+K+LE+ Q+GPRRES RQSW AGI L +QSL +
Sbjct: 837 DESSKLAAEAVSNIRTITTFSSQERIMKLLERVQEGPRRESARQSWLAGIMLGTTQSLIT 896
Query: 918 CTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFA 977
CT AL+FWYGG+LIADG + SKA FE F+I +TGR IA+AG+MTTD+AKGS++V SVF
Sbjct: 897 CTSALNFWYGGKLIADGKMVSKAFFELFLIFKTTGRAIAEAGTMTTDLAKGSNSVDSVFT 956
Query: 978 VMDRYTKIEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVG 1037
V+DR T IEPE+P+G+ E+I G I NV FAYP RP+++IF FSI+I GKSTA+VG
Sbjct: 957 VLDRRTTIEPENPDGYILEKIKGQITFLNVDFAYPTRPNMVIFNNFSIEIHEGKSTAIVG 1016
Query: 1038 QSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIREN 1097
S SGKST+IGLIERFYDPL+G VKID RDIRSYHLRSLR+H++LVSQEPTLFAGTIREN
Sbjct: 1017 PSRSGKSTVIGLIERFYDPLQGIVKIDGRDIRSYHLRSLRQHMSLVSQEPTLFAGTIREN 1076
Query: 1098 IAYG-ASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133
I YG AS++IDESEI+EA K ANAH+FI L++GYDT
Sbjct: 1077 IMYGRASNKIDESEIIEAGKTANAHEFITSLSDGYDT 1113
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LHK4|AB8B_ARATH Putative ABC transporter B family member 8 OS=Arabidopsis thaliana GN=ABCB8 PE=5 SV=1 | Back alignment and function description |
|---|
Score = 1070 bits (2768), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 545/1141 (47%), Positives = 776/1141 (68%), Gaps = 27/1141 (2%)
Query: 6 KARGSSEVTKTKNG-SFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNI 64
+++ +E +K+ + IF AD +D+ LMVLG +GAIGDG ST + L S+ MN +
Sbjct: 2 RSQAKTETVSSKSSRNTHVIFRFADWIDIVLMVLGSVGAIGDGMSTNVSLVFVSRIMNTL 61
Query: 65 GGVSNVPIDV-FTHNINKNTVHLLYLALGSWVACFLEGYCWTRTGERQATRMRARYLKAV 123
G + P F I K +++ +YL L F+EGYCW++T ERQ ++R YL+AV
Sbjct: 62 GYSQHNPSSTNFKEEIQKCSLYFVYLGLAILGVAFMEGYCWSKTSERQVMKIRRTYLEAV 121
Query: 124 LRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLWR 183
LRQ+V +FD + ST+E+I ++S D+ +IQ +SEK+P F+M+ S+F + + WR
Sbjct: 122 LRQEVSFFDSDI-STSEIIHTISTDTSLIQQLLSEKVPIFLMHISVFITGLVFSAYFSWR 180
Query: 184 LAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKT 243
L +V P +VLL+IPGL+YG+ L+ L++K EY KA +I EQA+SSI+T+ +F E++
Sbjct: 181 LTVVAIPTLVLLLIPGLIYGKYLVHLSKKSFKEYTKANSIVEQALSSIKTILSFTAETQI 240
Query: 244 INEFSSALQGSVQLGLKQGLAKGLAIGSNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAV 303
I ++S L+ +LGLKQGLAKGLA+GS+G++F IW+FL +YGSR+VM+ GG ++A
Sbjct: 241 IKKYSEVLERHKKLGLKQGLAKGLAVGSSGISFTIWAFLAWYGSRLVMHKQETGGRIYAA 300
Query: 304 GASIAVGGLALGAGLPNLKYFSEAMAAGERIMEMIKRVPKID-SDSMEGEIL-ENVLGEV 361
G S +GG++LG L ++YFSEA A RI I R+ +ID D+ +G I E + G V
Sbjct: 301 GISFVLGGISLGTALTEIRYFSEASVAAARICSRIDRISEIDGEDTKKGFIPGEKMKGRV 360
Query: 362 EFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEII 421
EF+ V Y SRPE+II KDF LT+ G++VAL+G SGSGKSTVIALLQRFY P G +
Sbjct: 361 EFERVTLVYLSRPETIILKDFTLTVDVGQSVALMGASGSGKSTVIALLQRFYDPCEGFVR 420
Query: 422 LDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNF 481
+DG I LQLKW+R +G+VSQ+ ALF TSI EN++FGK ASM+EVI AAKA+NAH F
Sbjct: 421 IDGFDIKTLQLKWMRQHIGVVSQDHALFGTSIMENLMFGKNKASMDEVISAAKAANAHGF 480
Query: 482 IRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEA 541
I QLP YDT +G RG +SGGQKQRIAIARAII+ P ILLLDEATSALD ESE ++Q A
Sbjct: 481 ITQLPNGYDTHIGNRGALLSGGQKQRIAIARAIIRNPVILLLDEATSALDGESETLIQNA 540
Query: 542 LDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQTT 601
LD+ GRTT+++AH+LST+R A++IA++++G V E GSH++L+ ++ Y LV+LQ
Sbjct: 541 LDQVAAGRTTLVVAHKLSTVRGANIIAMLENGSVRELGSHEDLM-TKNNHYAKLVKLQRQ 599
Query: 602 TPDD---------NNNATMHSLASKSSNMDMNSTSSRRLSIVSLSSSANSFAQGRGASQS 652
+ N+ ++ +S + +++ SS L + ++ +N ++
Sbjct: 600 FGHEHQQDLQDRVNSPEIQQRWSTMNSVIRLSNRSSPDLIVSPITLESNH------TTKI 653
Query: 653 NEEDIKKLPVPSFRRLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDH 712
NE +P SF RL+ +PEWK + +GC+ AT FGA+QP+YA ++G MIS +F
Sbjct: 654 NE----NIPSTSFTRLLPFVSPEWKSSLVGCISATTFGAIQPVYALSIGGMISAFFAKSS 709
Query: 713 DEIKKKTSIYAFCFLGLAVFTLVINIIQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFD 772
E++ K IY+ F+ L ++ +N++QHY+FA MGE L +R+R +ML KI TFE WFD
Sbjct: 710 QEMQDKIHIYSLIFISLTFLSITLNLLQHYSFAKMGERLMQRLRLKMLEKIFTFEPAWFD 769
Query: 773 QDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWRLALVMIAVQ 832
+EN + ICSRL + ++V+SLV DR +LLVQTIS VTIA +GL I+W+LALVMIAVQ
Sbjct: 770 VEENFTSEICSRLNNEVSIVKSLVADRISLLVQTISGVTIAMIIGLLISWKLALVMIAVQ 829
Query: 833 PLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQ 892
PL I+CFY ++VLL +SN AQ SS++A+EA+ N + +T+ S +I+++ + AQ
Sbjct: 830 PLSILCFYTKKVLLSKISNNYAYAQNRSSQIASEAIYNHKIVTSLGSTKKIIEIFDNAQY 889
Query: 893 GPRRESIRQSWYAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTG 952
+R+ + +W AG G+ +Q L TWALDFWYGG L+ G IS+ +F+TF +LVSTG
Sbjct: 890 EAKRKGRKAAWLAGFGMGSAQCLTFLTWALDFWYGGVLVQKGEISAGDVFKTFFVLVSTG 949
Query: 953 RVIADAGSMTTDIAKGSDAVGSVFAVMDRYTKIEPEDPEGHQPERITGNIELQNVHFAYP 1012
+VIA+AGSMT+D+AKG+ A+ SVF ++DR + E + G + I G IEL+N+ F+YP
Sbjct: 950 KVIAEAGSMTSDLAKGTAAISSVFNILDRPSSHENTN-HGEKMGTIQGRIELKNIDFSYP 1008
Query: 1013 ARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYH 1072
RP +++ FS+ I+ G S LVG SG GKST+I LI+RFYD G VKID ++R +
Sbjct: 1009 NRPSILVLRDFSLDIKPGTSIGLVGTSGCGKSTVIALIQRFYDVEIGCVKIDSENLRDIN 1068
Query: 1073 LRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYD 1132
++ R+H ALVSQEP +++G+I++NI G E E E+VEAAKAANAHDFI+ + +GY
Sbjct: 1069 IKWYRKHTALVSQEPVVYSGSIQDNIILG-RPEATEDEVVEAAKAANAHDFISAMEKGYK 1127
Query: 1133 T 1133
T
Sbjct: 1128 T 1128
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LJX0|AB19B_ARATH ABC transporter B family member 19 OS=Arabidopsis thaliana GN=ABCB19 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1007 bits (2603), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 525/1138 (46%), Positives = 761/1138 (66%), Gaps = 16/1138 (1%)
Query: 5 KKARGSSEVTKTKNGSFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNI 64
K +E K ++ F +F AD D LM +G +GAI G S P+ L + +N
Sbjct: 10 KTVPAEAEKKKEQSLPFFKLFSFADKFDYLLMFVGSLGAIVHGSSMPVFFLLFGQMVNGF 69
Query: 65 GGVSNVPIDVFTHNINKNTVHLLYLALGSWVACFLEGYCWTRTGERQATRMRARYLKAVL 124
G + + + H +++ +++ +YL L + + E CW +GERQ +R +YL+AVL
Sbjct: 70 GK-NQMDLHQMVHEVSRYSLYFVYLGLVVCFSSYAEIACWMYSGERQVAALRKKYLEAVL 128
Query: 125 RQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLWRL 184
+QDVG+FD T +++ SVS D+L++QDAISEK+ NF+ S F +V F+ W+L
Sbjct: 129 KQDVGFFDTD-ARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWKL 187
Query: 185 AIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTI 244
A++ + + G +Y TL + K R+ Y AG IAEQAI+ +RTVY++VGESK +
Sbjct: 188 ALLSVAVIPGIAFAGGLYAYTLTGITSKSRESYANAGVIAEQAIAQVRTVYSYVGESKAL 247
Query: 245 NEFSSALQGSVQLGLKQGLAKGLAIGSNGVTFGI----WSFLCYYGSRMVMYHGAQGGTV 300
N +S A+Q +++LG K G+AKGL +G T+GI W+ + +Y + GG
Sbjct: 248 NAYSDAIQYTLKLGYKAGMAKGLGLG---CTYGIACMSWALVFWYAGVFIRNGQTDGGKA 304
Query: 301 FAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEILENVLGE 360
F S VGG++LG NL FS+ AAG ++ME+I + P I D ++G+ L+ V G
Sbjct: 305 FTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIINQRPTIIQDPLDGKCLDQVHGN 364
Query: 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI 420
+EFK V F+YPSRP+ +IF++F + P+GKTVA+VGGSGSGKSTV++L++RFY P G+I
Sbjct: 365 IEFKDVTFSYPSRPDVMIFRNFNIFFPSGKTVAVVGGSGSGKSTVVSLIERFYDPNSGQI 424
Query: 421 ILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHN 480
+LDGV I LQLK+LR Q+GLV+QEPALFAT+I ENIL+GK DA+M EV AA A+NAH+
Sbjct: 425 LLDGVEIKTLQLKFLREQIGLVNQEPALFATTILENILYGKPDATMVEVEAAASAANAHS 484
Query: 481 FIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQE 540
FI LP+ YDTQVGERGVQ+SGGQKQRIAIARA++K P+ILLLDEATSALD+ SE +VQE
Sbjct: 485 FITLLPKGYDTQVGERGVQLSGGQKQRIAIARAMLKDPKILLLDEATSALDASSESIVQE 544
Query: 541 ALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQT 600
ALD+ +VGRTT+++AHRL TIRN D IAV+Q GQV+ETG+H+ELI A+SG Y SL+R Q
Sbjct: 545 ALDRVMVGRTTVVVAHRLCTIRNVDSIAVIQQGQVVETGTHEELI-AKSGAYASLIRFQE 603
Query: 601 T--TPDDNNNATMHSLASK-SSNMDMNSTSSRRLSIVSLSSSANSFAQGRGASQSNEEDI 657
T D +N +T + +++ S ++ S S R S+ +LS S ++ A GR SN E
Sbjct: 604 MVGTRDFSNPSTRRTRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMISNAETD 663
Query: 658 KKLPVPS--FRRLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEI 715
+K P F RL+ LN+PEW + +G VG+ L G + P +A M +MI V++ TD+D +
Sbjct: 664 RKTRAPENYFYRLLKLNSPEWPYSIMGAVGSILSGFIGPTFAIVMSNMIEVFYYTDYDSM 723
Query: 716 KKKTSIYAFCFLGLAVFTLVINIIQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDE 775
++KT Y F ++G ++ + +IQHY F+ MGE+LT R+R MLS IL EVGWFD+DE
Sbjct: 724 ERKTKEYVFIYIGAGLYAVGAYLIQHYFFSIMGENLTTRVRRMMLSAILRNEVGWFDEDE 783
Query: 776 NSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWRLALVMIAVQPLV 835
++S I +RLA DA V+S + +R ++++Q ++++ +F + + WR++L+++ PL+
Sbjct: 784 HNSSLIAARLATDAADVKSAIAERISVILQNMTSLLTSFIVAFIVEWRVSLLILGTFPLL 843
Query: 836 IICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPR 895
++ +A+++ LK + KA A++S +A E VSN+RT+ AF++Q +IL + + P+
Sbjct: 844 VLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQSKILSLFCHELRVPQ 903
Query: 896 RESIRQSWYAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVI 955
+ S+ +S +G SQ + AL WYG L++ G + + + F++LV T +
Sbjct: 904 KRSLYRSQTSGFLFGLSQLALYGSEALILWYGAHLVSKGVSTFSKVIKVFVVLVITANSV 963
Query: 956 ADAGSMTTDIAKGSDAVGSVFAVMDRYTKIEPEDPEGHQPERITGNIELQNVHFAYPARP 1015
A+ S+ +I +G +AVGSVF+V+DR T+I+P+D + E I G+IE ++V FAYP+RP
Sbjct: 964 AETVSLAPEIIRGGEAVGSVFSVLDRQTRIDPDDADADPVETIRGDIEFRHVDFAYPSRP 1023
Query: 1016 DVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRS 1075
DVM+F F+++I AG S ALVG SGSGKS++I +IERFYDPL G V ID +DIR +L+S
Sbjct: 1024 DVMVFRDFNLRIRAGHSQALVGASGSGKSSVIAMIERFYDPLAGKVMIDGKDIRRLNLKS 1083
Query: 1076 LRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133
LR I LV QEP LFA TI +NIAYG D ESE+++AA+AANAH FI+GL EGY T
Sbjct: 1084 LRLKIGLVQQEPALFAATIFDNIAYG-KDGATESEVIDAARAANAHGFISGLPEGYKT 1140
|
Auxin efflux transporter that acts as a negative regulator of light signaling to promote hypocotyl elongation. Mediates the accumulation of chlorophyll and anthocyanin, as well as the expression of genes in response to light. Participates in auxin efflux and thus regulates the polar auxin basipetal transport (from auxin-producing leaves to auxin-sensitive tissues, and from root tips to root elongating zone). Involved in divers auxin-mediated responses including gravitropism, phototropism and lateral root formation. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZR72|AB1B_ARATH ABC transporter B family member 1 OS=Arabidopsis thaliana GN=ABCB1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 940 bits (2430), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 494/1131 (43%), Positives = 730/1131 (64%), Gaps = 21/1131 (1%)
Query: 20 SFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNI 79
+F+ +F ADG+D LM +G +GA G S PL L + +N+ G SN ++ +
Sbjct: 28 AFKELFRFADGLDYVLMGIGSVGAFVHGCSLPLFLRFFADLVNSFGSNSN-NVEKMMEEV 86
Query: 80 NKNTVHLLYLALGSWVACFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTA 139
K ++ L + W + + E CW +GERQ T+MR +YL+A L QD+ +FD V T+
Sbjct: 87 LKYALYFLVVGAAIWASSWAEISCWMWSGERQTTKMRIKYLEAALNQDIQFFDTEV-RTS 145
Query: 140 EVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLWRLAIVGFPFVVLLVIPG 199
+V+ +++ D++++QDAISEKL NF+ + F ++V F +W+LA+V V L+ + G
Sbjct: 146 DVVFAINTDAVMVQDAISEKLGNFIHYMATFVSGFIVGFTAVWQLALVTLAVVPLIAVIG 205
Query: 200 LMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGL 259
++ TL L+ K ++ ++AG I EQ + IR V AFVGES+ +SSAL+ + +LG
Sbjct: 206 GIHTTTLSKLSNKSQESLSQAGNIVEQTVVQIRVVMAFVGESRASQAYSSALKIAQKLGY 265
Query: 260 KQGLAKGLAIGSNG-VTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGL 318
K GLAKG+ +G+ V F ++ L +YG +V +H GG A ++ +GGLALG
Sbjct: 266 KTGLAKGMGLGATYFVVFCCYALLLWYGGYLVRHHLTNGGLAIATMFAVMIGGLALGQSA 325
Query: 319 PNLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESII 378
P++ F++A A +I +I P I+ +S G L++V G VE K V F+YPSRP+ I
Sbjct: 326 PSMAAFAKAKVAAAKIFRIIDHKPTIERNSESGVELDSVTGLVELKNVDFSYPSRPDVKI 385
Query: 379 FKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438
+FCL++PAGKT+ALVG SGSGKSTV++L++RFY P G+++LDG + L+L+WLR Q
Sbjct: 386 LNNFCLSVPAGKTIALVGSSGSGKSTVVSLIERFYDPNSGQVLLDGQDLKTLKLRWLRQQ 445
Query: 439 MGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGV 498
+GLVSQEPALFATSIKENIL G+ DA E+ EAA+ +NAH+FI +LP +DTQVGERG+
Sbjct: 446 IGLVSQEPALFATSIKENILLGRPDADQVEIEEAARVANAHSFIIKLPDGFDTQVGERGL 505
Query: 499 QMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRL 558
Q+SGGQKQRIAIARA++K P ILLLDEATSALDSESE++VQEALD+ ++GRTT+IIAHRL
Sbjct: 506 QLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLIIAHRL 565
Query: 559 STIRNADVIAVVQDGQVMETGSHDELI-QAESGLYTSLVRLQ--------------TTTP 603
STIR AD++AV+Q G V E G+HDEL + E+G+Y L+++Q + P
Sbjct: 566 STIRKADLVAVLQQGSVSEIGTHDELFSKGENGVYAKLIKMQEAAHETAMSNARKSSARP 625
Query: 604 DDNNNATMHSLASKSSNMDMNSTSSRRLSIVSLSSSANSFAQGRGASQSNEEDIKKLPVP 663
N+ + +++S+ S SRRLS S S + S + NE+ K
Sbjct: 626 SSARNSVSSPIMTRNSSYG-RSPYSRRLSDFSTSDFSLSIDASSYPNYRNEKLAFKDQAN 684
Query: 664 SFRRLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYA 723
SF RL +N+PEWK A LG VG+ + G++ +A+ + +++SVY+ DH+ + K+ Y
Sbjct: 685 SFWRLAKMNSPEWKYALLGSVGSVICGSLSAFFAYVLSAVLSVYYNPDHEYMIKQIDKYC 744
Query: 724 FCFLGLAVFTLVINIIQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICS 783
+ +GL+ LV N +QH + +GE+LTKR+RE+MLS +L E+ WFDQ+EN S I +
Sbjct: 745 YLLIGLSSAALVFNTLQHSFWDIVGENLTKRVREKMLSAVLKNEMAWFDQEENESARIAA 804
Query: 784 RLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWRLALVMIAVQPLVIICFYARR 843
RLA DAN VRS +GDR +++VQ + + +A T G + WRLALV++AV P+V+ ++
Sbjct: 805 RLALDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLVAVFPVVVAATVLQK 864
Query: 844 VLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSW 903
+ + S A A+ ++LA EA++N+RT+ AF+S+ +I+++ + P + +
Sbjct: 865 MFMTGFSGDLEAAHAKGTQLAGEAIANVRTVAAFNSEAKIVRLYTANLEPPLKRCFWKGQ 924
Query: 904 YAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTT 963
AG G +Q ++AL WY L+ G FM+L+ + A+ ++
Sbjct: 925 IAGSGYGVAQFCLYASYALGLWYASWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAP 984
Query: 964 DIAKGSDAVGSVFAVMDRYTKIEPEDPEGHQ-PERITGNIELQNVHFAYPARPDVMIFEG 1022
D KG A+ SVF ++DR T+IEP+DP+ P+R+ G +EL+++ F+YP+RPD+ IF
Sbjct: 985 DFIKGGQAMRSVFELLDRKTEIEPDDPDTTPVPDRLRGEVELKHIDFSYPSRPDIQIFRD 1044
Query: 1023 FSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIAL 1082
S++ AGK+ ALVG SG GKS++I LI+RFY+P G V ID +DIR Y+L+++R+HIA+
Sbjct: 1045 LSLRARAGKTLALVGPSGCGKSSVISLIQRFYEPSSGRVMIDGKDIRKYNLKAIRKHIAI 1104
Query: 1083 VSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133
V QEP LF TI ENIAYG + E+EI++AA A+AH FI+ L EGY T
Sbjct: 1105 VPQEPCLFGTTIYENIAYG-HECATEAEIIQAATLASAHKFISALPEGYKT 1154
|
Auxin efflux transporter that acts as a negative regulator of light signaling to promote hypocotyl elongation. Mediates the accumulation of chlorophyll and anthocyanin, as well as the expression of genes in response to light. Participates directly in auxin efflux and thus regulates the polar (presumably basipetal) auxin transport (from root tips to root elongating zone). Transports also some auxin metabolites such as oxindoleacetic acid and indoleacetaldehyde. Involved in divers auxin-mediated responses including gravitropism, phototropism and lateral root formation. Confers resistance to herbicides such as dicamba, pendimethalin, oryzalin, and monosodium acid methanearsonate (MSMA), but not to herbicides such as glyphosate, atrazine, bentazon and fluazifop-p-butyl. Mediates also resistance to xenobiotics such as cycloheximide and the cytokinin N6-(2-isopentenyl)adenine (2IP). Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8LPK2|AB2B_ARATH ABC transporter B family member 2 OS=Arabidopsis thaliana GN=ABCB2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 910 bits (2352), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 485/1137 (42%), Positives = 703/1137 (61%), Gaps = 25/1137 (2%)
Query: 2 SGEKKARGSSEVTKTKNGSFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFM 61
SG+ E+T+ K S +F AD D LM LG +GA G S P+ K +
Sbjct: 44 SGDPAPEKEKEMTQPKV-SLLKLFSFADFYDCVLMTLGSVGACIHGASVPIFFIFFGKLI 102
Query: 62 NNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACFLEGYCWTRTGERQATRMRARYLK 121
N IG P +H + K ++ +YL++ + +LE CW TGERQA +MR YL+
Sbjct: 103 NIIGLAYLFPKQA-SHRVAKYSLDFVYLSVAILFSSWLEVACWMHTGERQAAKMRRAYLR 161
Query: 122 AVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLML 181
++L QD+ FD ST EVI+++++D LV+QDA+SEK+ NF+ S F + + F +
Sbjct: 162 SMLSQDISLFDTE-ASTGEVISAITSDILVVQDALSEKVGNFLHYISRFIAGFAIGFTSV 220
Query: 182 WRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGES 241
W++++V V L+ + G +Y + L ++R Y KAG IAE+ I ++RTV AF GE
Sbjct: 221 WQISLVTLSIVPLIALAGGIYAFVAIGLIARVRKSYIKAGEIAEEVIGNVRTVQAFTGEE 280
Query: 242 KTINEFSSALQGSVQLGLKQGLAKGLAIGS-NGVTFGIWSFLCYYGSRMVMYHGAQGGTV 300
+ + + AL+ + + G K GL KGL +GS + V F W+ L ++ S +V A GG
Sbjct: 281 RAVRLYREALENTYKYGRKAGLTKGLGLGSMHCVLFLSWALLVWFTSVVVHKDIADGGKS 340
Query: 301 FAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEILENVLGE 360
F ++ + GL+LG P++ F A AA I +MI+R + + G L V G
Sbjct: 341 FTTMLNVVIAGLSLGQAAPDISAFVRAKAAAYPIFKMIERNTVTKTSAKSGRKLGKVDGH 400
Query: 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI 420
++FK F+YPSRP+ +IF L IPAGK VALVGGSGSGKSTVI+L++RFY P+ G +
Sbjct: 401 IQFKDATFSYPSRPDVVIFDRLNLAIPAGKIVALVGGSGSGKSTVISLIERFYEPISGAV 460
Query: 421 ILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHN 480
+LDG +I +L +KWLR Q+GLV+QEPALFAT+I+ENIL+GK+DA+ EE+ AAK S A +
Sbjct: 461 LLDGNNISELDIKWLRGQIGLVNQEPALFATTIRENILYGKDDATAEEITRAAKLSEAIS 520
Query: 481 FIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQE 540
FI LP+ ++TQVGERG+Q+SGGQKQRIAI+RAI+K P ILLLDEATSALD+ESE+ VQE
Sbjct: 521 FINNLPEGFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQE 580
Query: 541 ALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQT 600
ALD+ +VGRTT+++AHRLST+RNAD+IAVV +G+++E G+H+ LI G Y+SL+RLQ
Sbjct: 581 ALDRVMVGRTTVVVAHRLSTVRNADIIAVVHEGKIVEFGNHENLISNPDGAYSSLLRLQE 640
Query: 601 TTPDDNNNATMHSLASKSSNMDMNSTSSRRLSIV---SLSSSANSFAQGR-GASQSNEED 656
T AS N +N T SR SI LS + +SF R ++ + D
Sbjct: 641 T-------------ASLQRNPSLNRTLSRPHSIKYSRELSRTRSSFCSERESVTRPDGAD 687
Query: 657 IKKLPVPSFRRLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIK 716
K + RL ++ P+W G + A + G+ P++A + + Y+ + DE +
Sbjct: 688 PSKKVKVTVGRLYSMIRPDWMYGVCGTICAFIAGSQMPLFALGVSQALVSYY-SGWDETQ 746
Query: 717 KKTSIYAFCFLGLAVFTLVINIIQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDEN 776
K+ A F +V TL++ I+H F MGE LT R+RE M IL E+GWFD+ +N
Sbjct: 747 KEIKKIAILFCCASVITLIVYTIEHICFGTMGERLTLRVRENMFRAILKNEIGWFDEVDN 806
Query: 777 SSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWRLALVMIAVQPLVI 836
+S + SRL DA +++++V DR+ +L+Q + V +F + + WRL LV++A PLVI
Sbjct: 807 TSSMLASRLESDATLLKTIVVDRSTILLQNLGLVVTSFIIAFILNWRLTLVVLATYPLVI 866
Query: 837 ICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRR 896
+ ++ ++ KA +++ LA E+VSN+RT+ AF ++ +IL++ + P +
Sbjct: 867 SGHISEKLFMQGYGGDLNKAYLKANMLAGESVSNIRTVAAFCAEEKILELYSRELLEPSK 926
Query: 897 ESIRQSWYAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIA 956
S R+ AG+ SQ ++ L WYG L+ G K++ +TFM+L+ T +
Sbjct: 927 SSFRRGQIAGLFYGVSQFFIFSSYGLALWYGSTLMDKGLAGFKSVMKTFMVLIVTALAMG 986
Query: 957 DAGSMTTDIAKGSDAVGSVFAVMDRYTKIEPEDPEGHQPERITGNIELQNVHFAYPARPD 1016
+ ++ D+ KG+ V SVF ++DR T+I E E + + G IEL+ VHF+YP+RPD
Sbjct: 987 ETLALAPDLLKGNQMVASVFEILDRKTQIVGETSE--ELNNVEGTIELKGVHFSYPSRPD 1044
Query: 1017 VMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSL 1076
V+IF F + + AGKS ALVGQSGSGKS++I LI RFYDP G V I+ +DI+ L++L
Sbjct: 1045 VVIFRDFDLIVRAGKSMALVGQSGSGKSSVISLILRFYDPTAGKVMIEGKDIKKLDLKAL 1104
Query: 1077 RRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133
R+HI LV QEP LFA TI ENI YG ++ +SE+VE+A ANAH FI L EGY T
Sbjct: 1105 RKHIGLVQQEPALFATTIYENILYG-NEGASQSEVVESAMLANAHSFITSLPEGYST 1160
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1133 | ||||||
| 325977001 | 1250 | multidrug/pheromone exporter protein [He | 0.980 | 0.888 | 0.813 | 0.0 | |
| 224141315 | 1242 | multidrug/pheromone exporter, MDR family | 0.991 | 0.904 | 0.790 | 0.0 | |
| 359488881 | 1242 | PREDICTED: ABC transporter B family memb | 0.978 | 0.892 | 0.803 | 0.0 | |
| 296087758 | 1216 | unnamed protein product [Vitis vinifera] | 0.923 | 0.860 | 0.806 | 0.0 | |
| 449449176 | 1251 | PREDICTED: ABC transporter B family memb | 0.976 | 0.884 | 0.753 | 0.0 | |
| 357496247 | 1279 | ABC transporter B family member [Medicag | 0.997 | 0.883 | 0.743 | 0.0 | |
| 357496215 | 1275 | ABC transporter B family member [Medicag | 0.978 | 0.869 | 0.737 | 0.0 | |
| 297818436 | 1239 | abc transporter family protein [Arabidop | 0.977 | 0.894 | 0.759 | 0.0 | |
| 15229473 | 1240 | ABC transporter B family member 15 [Arab | 0.978 | 0.894 | 0.760 | 0.0 | |
| 224141005 | 1238 | multidrug/pheromone exporter, MDR family | 0.969 | 0.886 | 0.732 | 0.0 |
| >gi|325977001|gb|ADZ48235.1| multidrug/pheromone exporter protein [Hevea brasiliensis] | Back alignment and taxonomy information |
|---|
Score = 1866 bits (4833), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 912/1121 (81%), Positives = 1013/1121 (90%), Gaps = 10/1121 (0%)
Query: 19 GSFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHN 78
GS RSIFMHADGVD FLMVLG IG++GDGFSTPLVLF+TSK MNNIGG S+ D F+HN
Sbjct: 10 GSIRSIFMHADGVDWFLMVLGVIGSVGDGFSTPLVLFVTSKLMNNIGGASSFQSD-FSHN 68
Query: 79 INKNTVHLLYLALGSWVACFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTST 138
INKN + L YLA G WV CF+EGYCWTRTGERQATRMRARYLKAVLRQ+VGYFDLHVTST
Sbjct: 69 INKNALALCYLACGQWVVCFVEGYCWTRTGERQATRMRARYLKAVLRQEVGYFDLHVTST 128
Query: 139 AEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLWRLAIVGFPFVVLLVIP 198
AEVITSVSNDS VIQD +SEK+PN +MNAS+FFGCYLV FL+LWRLAIVGFPF+V+LVIP
Sbjct: 129 AEVITSVSNDSFVIQDVLSEKVPNLLMNASMFFGCYLVGFLLLWRLAIVGFPFIVILVIP 188
Query: 199 GLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLG 258
GLMYGRTLM LARK+++EYNKAGTIAEQA+SSIRTVYAFVGESKT+ +S+AL SV+LG
Sbjct: 189 GLMYGRTLMGLARKIKEEYNKAGTIAEQALSSIRTVYAFVGESKTVTAYSAALDFSVKLG 248
Query: 259 LKQGLAKGLAIGSNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGL 318
LKQGLAKGLAIGSNGV F IWSF+ YYGSR+VMYH A+GGTVFAVGASIAVGGLALGAGL
Sbjct: 249 LKQGLAKGLAIGSNGVVFAIWSFMSYYGSRLVMYHNARGGTVFAVGASIAVGGLALGAGL 308
Query: 319 PNLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESII 378
N+KY SEA AGERIME+I+R+P+ID +++EGEILENV GEVEFK V+FAYPSRPESII
Sbjct: 309 SNVKYLSEACTAGERIMEVIRRIPRIDLENLEGEILENVGGEVEFKHVEFAYPSRPESII 368
Query: 379 FKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438
FKDF L IPAG+TVALVGGSGSGKSTVIALLQRFY PL GEI+LDGV+IDKLQLKWLRSQ
Sbjct: 369 FKDFTLKIPAGRTVALVGGSGSGKSTVIALLQRFYDPLDGEILLDGVAIDKLQLKWLRSQ 428
Query: 439 MGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGV 498
MGLVSQEPALFATSIKENILFGKEDA+MEEV+EAAKASNAHNFI QLPQ YDTQVGERGV
Sbjct: 429 MGLVSQEPALFATSIKENILFGKEDATMEEVVEAAKASNAHNFICQLPQGYDTQVGERGV 488
Query: 499 QMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRL 558
QMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESER+VQ+ALDKA +GRTTIIIAHRL
Sbjct: 489 QMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERIVQQALDKAAIGRTTIIIAHRL 548
Query: 559 STIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQTTTPDDNNNATMHSLASKS 618
STIRN DVI VVQ+GQVMETGSHDEL++ E GLYT+L+RLQ T + +N + + S S
Sbjct: 549 STIRNVDVITVVQNGQVMETGSHDELMEIEDGLYTTLIRLQQTEKEKSNEDDQYHIPSSS 608
Query: 619 --SNMDMNSTSSRRLSIVSLSSSANSFAQGRGASQSNEEDI----KKLPVPSFRRLVALN 672
S MDMN+TSSRRLS+VS +SSANS A R + N E+I +K PVPSFRRL+ALN
Sbjct: 609 LISKMDMNNTSSRRLSMVSRTSSANSIAPSRAS--VNAENIQLEEQKFPVPSFRRLLALN 666
Query: 673 APEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVF 732
PEWKQA+ GC+GA LFG VQP+YAFAMGSMISVYF TDHDEIKK+ IY+ CFLGL++F
Sbjct: 667 LPEWKQASFGCLGAILFGGVQPLYAFAMGSMISVYFYTDHDEIKKRIRIYSLCFLGLSIF 726
Query: 733 TLVINIIQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVV 792
T ++NI+QHYNFAYMGE+LTKRIRE+MLSK+LTFEVGWFDQDENSSGAICSRLAKDANVV
Sbjct: 727 TFIVNIVQHYNFAYMGEYLTKRIREKMLSKMLTFEVGWFDQDENSSGAICSRLAKDANVV 786
Query: 793 RSLVGDRTALLVQTISAVTIAFTMGLFIAWRLALVMIAVQPLVIICFYARRVLLKSMSNK 852
RSLVGDR AL+VQT+SAV IA TMGLFIAWRLA+VMIAVQPL+I+CFY RRVLLKSMS+K
Sbjct: 787 RSLVGDRMALVVQTVSAVVIACTMGLFIAWRLAIVMIAVQPLIIVCFYTRRVLLKSMSHK 846
Query: 853 AIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSWYAGIGLAFS 912
AIKAQ ESSKLAAEAVSNLRTITAFSSQ RIL+MLEKAQ+GP RESIRQS +AGIGL S
Sbjct: 847 AIKAQDESSKLAAEAVSNLRTITAFSSQDRILRMLEKAQEGPLRESIRQSLFAGIGLGTS 906
Query: 913 QSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAV 972
QSL SCTWALDFWYGG+LI+ GYI++K LFETFMILVSTGRVIADAGSMTTD+AKGSDAV
Sbjct: 907 QSLMSCTWALDFWYGGKLISKGYITAKDLFETFMILVSTGRVIADAGSMTTDLAKGSDAV 966
Query: 973 GSVFAVMDRYTKIEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKS 1032
GSVFAV+DRYTKIEPE +G +PE I G++EL++V+FAYPARPDV+IFEGFSIKIEAGKS
Sbjct: 967 GSVFAVLDRYTKIEPEGADGLKPEMIMGHVELRDVNFAYPARPDVIIFEGFSIKIEAGKS 1026
Query: 1033 TALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAG 1092
TALVGQSGSGKSTIIGLIERFYDP++G VKID RDI+SYHLRSLR+HIALVSQEPTLFAG
Sbjct: 1027 TALVGQSGSGKSTIIGLIERFYDPIRGIVKIDGRDIKSYHLRSLRKHIALVSQEPTLFAG 1086
Query: 1093 TIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133
TIRENIAYG S DESEI+EAAKAANAHDFIAGL +GYDT
Sbjct: 1087 TIRENIAYGTSKN-DESEIIEAAKAANAHDFIAGLKDGYDT 1126
|
Source: Hevea brasiliensis Species: Hevea brasiliensis Genus: Hevea Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224141315|ref|XP_002324019.1| multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa] gi|222867021|gb|EEF04152.1| multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1845 bits (4780), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 893/1129 (79%), Positives = 1012/1129 (89%), Gaps = 6/1129 (0%)
Query: 10 SSEVTKTKNGSFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSN 69
+S+ ++ GS RSIFMHAD VD LMVLG+IG+IGDGFSTPLVLF+TSK MNN+GG S+
Sbjct: 6 NSKKSRDHVGSIRSIFMHADRVDWLLMVLGFIGSIGDGFSTPLVLFVTSKLMNNLGGASS 65
Query: 70 VPIDVFTHNINKNTVHLLYLALGSWVACFLEGYCWTRTGERQATRMRARYLKAVLRQDVG 129
+ FTH+INKN + L YLA G WV FLEGYCWTRTGERQATRMRARYLKAVLRQDVG
Sbjct: 66 -SAEAFTHSINKNALALCYLACGQWVVSFLEGYCWTRTGERQATRMRARYLKAVLRQDVG 124
Query: 130 YFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLWRLAIVGF 189
YFDLHVTSTAEVITSVSNDSLVIQD +SEK+PNF+MN ++FFGCY++ F++LWRLAIVG
Sbjct: 125 YFDLHVTSTAEVITSVSNDSLVIQDVLSEKVPNFLMNVAMFFGCYIIGFVLLWRLAIVGL 184
Query: 190 PFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSS 249
PFVV+LVIPGL+YGRTLM +ARK R+EYNK+GTIAEQAISSIRTV+AFV E+KTI +S+
Sbjct: 185 PFVVILVIPGLVYGRTLMGIARKTREEYNKSGTIAEQAISSIRTVFAFVSEAKTIAAYSA 244
Query: 250 ALQGSVQLGLKQGLAKGLAIGSNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAV 309
AL+ SV+LGL+QGLAKGLAIGSNGV FGIWSF+ YYGSRMVMYHG+ GGTVFAVGA+IAV
Sbjct: 245 ALEFSVKLGLRQGLAKGLAIGSNGVVFGIWSFMSYYGSRMVMYHGSAGGTVFAVGAAIAV 304
Query: 310 GGLALGAGLPNLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFA 369
GGLALGAGL N+KYFSEA +AGERI+EMI RVPKID ++MEGE LENV GEVEF+ V+FA
Sbjct: 305 GGLALGAGLSNVKYFSEASSAGERIVEMINRVPKIDLENMEGETLENVTGEVEFRHVEFA 364
Query: 370 YPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDK 429
YPSRPES+IFKDFCL IPAGKTVALVGGSGSGKSTVIALLQRFY PLGGEI++DG+++DK
Sbjct: 365 YPSRPESMIFKDFCLRIPAGKTVALVGGSGSGKSTVIALLQRFYDPLGGEILVDGIAVDK 424
Query: 430 LQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQY 489
LQLKWLRSQMGLVSQEPALFAT+IKENILFGKEDA++ EV+EAAKASNAHNFI LPQ+Y
Sbjct: 425 LQLKWLRSQMGLVSQEPALFATTIKENILFGKEDATINEVVEAAKASNAHNFISHLPQEY 484
Query: 490 DTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGR 549
DTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKA VGR
Sbjct: 485 DTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAAVGR 544
Query: 550 TTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQTTTPDDNNNA 609
TTIIIAHRLSTIRNADVIAVVQDGQ++E+GSH ELI+ E+GLYTSLV LQ T + N
Sbjct: 545 TTIIIAHRLSTIRNADVIAVVQDGQILESGSHGELIENENGLYTSLVLLQQTEKEKTNED 604
Query: 610 TMHSLASKS--SNMDMNSTSSRRLSIVSLSSSANSFAQGRGASQSNEEDI---KKLPVPS 664
++S S SNMD+N+ SSRRLSIVS SSS NS R + + E + ++LPVPS
Sbjct: 605 ASTDISSPSLVSNMDVNNASSRRLSIVSRSSSQNSVTPSRASLTAGENALVEEQQLPVPS 664
Query: 665 FRRLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAF 724
FRRL+ALN PEWKQA++GC+GA +FG VQP+YAF MGSMIS+YFL DH+EIK+K IY+
Sbjct: 665 FRRLLALNLPEWKQASIGCLGAIIFGGVQPLYAFTMGSMISIYFLADHNEIKEKIRIYSL 724
Query: 725 CFLGLAVFTLVINIIQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSR 784
CFLGLA +L++N++QHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQD+NSSGAICSR
Sbjct: 725 CFLGLAFLSLIVNVLQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDKNSSGAICSR 784
Query: 785 LAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWRLALVMIAVQPLVIICFYARRV 844
LA DANVVRSLVGDR AL+VQTISAVTIA TMGL IAWRLA+VMIAVQP++I+CFY RRV
Sbjct: 785 LATDANVVRSLVGDRMALIVQTISAVTIACTMGLIIAWRLAVVMIAVQPIIIVCFYVRRV 844
Query: 845 LLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSWY 904
LL SMS KAIKAQ ES+KLAA+AVSNLRTITAFSSQ RILKML KAQ+GPR+E+IRQSWY
Sbjct: 845 LLTSMSQKAIKAQDESTKLAADAVSNLRTITAFSSQDRILKMLGKAQEGPRKENIRQSWY 904
Query: 905 AGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTD 964
AGIGL SQSL SCTWALDFWYGGRLI+ GYI++KALFETFMILVSTGRVIADAGSMTTD
Sbjct: 905 AGIGLGTSQSLMSCTWALDFWYGGRLISQGYITAKALFETFMILVSTGRVIADAGSMTTD 964
Query: 965 IAKGSDAVGSVFAVMDRYTKIEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFS 1024
+AKGSD++ SVFAV+DRYT+IEPEDPEG+QP I G++EL +V FAYPARPDV IF+GFS
Sbjct: 965 LAKGSDSIRSVFAVLDRYTRIEPEDPEGYQPGEIKGHVELCDVDFAYPARPDVRIFKGFS 1024
Query: 1025 IKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVS 1084
I IEAGKSTALVGQSGSGKSTIIGLIERFYDPL+G VKID RDIRSYHLRSLR++IALVS
Sbjct: 1025 ISIEAGKSTALVGQSGSGKSTIIGLIERFYDPLRGTVKIDGRDIRSYHLRSLRKYIALVS 1084
Query: 1085 QEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133
QEPTLFAGT++ENI YGA++E+ ESE++EAAKAANAHDFIAGL +GYDT
Sbjct: 1085 QEPTLFAGTVKENIIYGAANEVSESEVMEAAKAANAHDFIAGLKDGYDT 1133
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359488881|ref|XP_003633838.1| PREDICTED: ABC transporter B family member 15-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1823 bits (4722), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 899/1119 (80%), Positives = 1002/1119 (89%)
Query: 15 KTKNGSFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDV 74
K NGS RSIFMHAD D++LM G++GA+GDGFS P+VL++TS+ MNNIG S D
Sbjct: 5 KKSNGSVRSIFMHADAADLWLMAFGFLGALGDGFSMPVVLYVTSEIMNNIGSSSTSAADA 64
Query: 75 FTHNINKNTVHLLYLALGSWVACFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLH 134
F INKN V LLY+A GSWVACFLEGYCW+RT ERQATRMRARYLKAVLRQDVGYFDLH
Sbjct: 65 FVDKINKNAVTLLYIACGSWVACFLEGYCWSRTAERQATRMRARYLKAVLRQDVGYFDLH 124
Query: 135 VTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLWRLAIVGFPFVVL 194
VTSTAEVITSVSNDSLVIQD +SEK+PNF+MNA+ F G Y+ AF MLWRLAIVGFPFVV+
Sbjct: 125 VTSTAEVITSVSNDSLVIQDVLSEKVPNFLMNAATFLGSYIAAFAMLWRLAIVGFPFVVV 184
Query: 195 LVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGS 254
LVIPGLMYGRTLM LAR +R+EYNKAGTIAEQAISSIRTVY+FVGESKT ++FS+ALQGS
Sbjct: 185 LVIPGLMYGRTLMGLARTIREEYNKAGTIAEQAISSIRTVYSFVGESKTRSDFSAALQGS 244
Query: 255 VQLGLKQGLAKGLAIGSNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLAL 314
V+LGL+QGLAKGLAIGSNG+ F IWSF+ +YGSRMVMYHGA+GGTVF VGA+IAVGGL+L
Sbjct: 245 VKLGLRQGLAKGLAIGSNGIVFAIWSFMSWYGSRMVMYHGARGGTVFVVGAAIAVGGLSL 304
Query: 315 GAGLPNLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRP 374
GAGL NLKYFSEA +AGERIMEMIKRVPKIDSD+MEG+ILENV GEVEF+ V+FAYPSRP
Sbjct: 305 GAGLSNLKYFSEACSAGERIMEMIKRVPKIDSDNMEGQILENVSGEVEFRHVEFAYPSRP 364
Query: 375 ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKW 434
ESIIFKDF L IPAGKTVALVGGSGSGKST I+LLQRFY PLGGEI+LDGV+IDKLQLKW
Sbjct: 365 ESIIFKDFNLKIPAGKTVALVGGSGSGKSTAISLLQRFYDPLGGEILLDGVAIDKLQLKW 424
Query: 435 LRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVG 494
+RSQMGLVSQEPALFAT+IKENILFGKEDA MEEV+ AAKASNAHNFI QLPQ YDTQVG
Sbjct: 425 VRSQMGLVSQEPALFATTIKENILFGKEDAVMEEVVAAAKASNAHNFICQLPQGYDTQVG 484
Query: 495 ERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIII 554
ERGVQMSGGQKQRIAIARAIIKAP+ILLLDEATSALDSESERVVQEALD A VGRTTIII
Sbjct: 485 ERGVQMSGGQKQRIAIARAIIKAPQILLLDEATSALDSESERVVQEALDNAAVGRTTIII 544
Query: 555 AHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQTTTPDDNNNATMHSL 614
AHRLSTIRNAD+I VVQ+GQ+METGSHD+LIQ + GLYTSLVRLQ T + + + S
Sbjct: 545 AHRLSTIRNADIITVVQNGQIMETGSHDDLIQNDDGLYTSLVRLQQTEKSEAPSLPISST 604
Query: 615 ASKSSNMDMNSTSSRRLSIVSLSSSANSFAQGRGASQSNEEDIKKLPVPSFRRLVALNAP 674
A+ S++MD++STSSRRLS+VS SSSANS A R A + + PVPSFRRL+A+N P
Sbjct: 605 AAISTSMDLHSTSSRRLSLVSRSSSANSNAPSRPAGEVFTAAEQDFPVPSFRRLLAMNLP 664
Query: 675 EWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTL 734
EWKQA++GC+ A LFGAVQP+YAFAMGSMISVYF +HDEIKKKT YA CF+GLAVF+
Sbjct: 665 EWKQASMGCLSAVLFGAVQPVYAFAMGSMISVYFFPEHDEIKKKTRTYALCFVGLAVFSF 724
Query: 735 VINIIQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRS 794
++NI QHYNFA MGE+LTKR+RERM SKILTFEVGWFDQD+NS+GAICSRLAKDANVVRS
Sbjct: 725 LVNISQHYNFAAMGEYLTKRVRERMFSKILTFEVGWFDQDQNSTGAICSRLAKDANVVRS 784
Query: 795 LVGDRTALLVQTISAVTIAFTMGLFIAWRLALVMIAVQPLVIICFYARRVLLKSMSNKAI 854
LVGDR ALLVQT SAV IA TMGL IAWRLA+VMIAVQPL+I+C+Y RRVLLKSMS K I
Sbjct: 785 LVGDRMALLVQTFSAVIIACTMGLVIAWRLAVVMIAVQPLIIVCYYTRRVLLKSMSAKGI 844
Query: 855 KAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSWYAGIGLAFSQS 914
KAQ ESSKLAAEAVSNLR ITAFSSQ RILKMLE AQ+GP RESIRQSW+AGIGL SQS
Sbjct: 845 KAQEESSKLAAEAVSNLRIITAFSSQARILKMLEAAQEGPLRESIRQSWFAGIGLGTSQS 904
Query: 915 LASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGS 974
L +CTWALDFWYGG+LI+ GYISSKALFETFMILVSTGRVIADAGSMT+D+AKGSDAVGS
Sbjct: 905 LMTCTWALDFWYGGKLISQGYISSKALFETFMILVSTGRVIADAGSMTSDLAKGSDAVGS 964
Query: 975 VFAVMDRYTKIEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTA 1034
VFAV+DRYT+IEPEDP+GHQPE+I G +E+++V FAYPARPDV++F+ FSI I+AGKSTA
Sbjct: 965 VFAVLDRYTRIEPEDPDGHQPEKIIGRVEIRDVDFAYPARPDVLVFKSFSINIDAGKSTA 1024
Query: 1035 LVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTI 1094
LVGQSGSGKSTIIGLIERFYDPL+G VKID +DIRSYHLR LR+HIALVSQEPTLFAGTI
Sbjct: 1025 LVGQSGSGKSTIIGLIERFYDPLQGSVKIDGKDIRSYHLRVLRKHIALVSQEPTLFAGTI 1084
Query: 1095 RENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133
RENIAYGASD+IDESEI+EAA+AANAHDFIAGL GYDT
Sbjct: 1085 RENIAYGASDKIDESEIIEAARAANAHDFIAGLKNGYDT 1123
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296087758|emb|CBI35014.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1791 bits (4639), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 885/1098 (80%), Positives = 986/1098 (89%)
Query: 36 MVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWV 95
M G++GA+GDGFS P+VL++TS+ MNNIG S D F INKN V LLY+A GSWV
Sbjct: 1 MAFGFLGALGDGFSMPVVLYVTSEIMNNIGSSSTSAADAFVDKINKNAVTLLYIACGSWV 60
Query: 96 ACFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDA 155
ACFLEGYCW+RT ERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQD
Sbjct: 61 ACFLEGYCWSRTAERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDV 120
Query: 156 ISEKLPNFVMNASLFFGCYLVAFLMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRD 215
+SEK+PNF+MNA+ F G Y+ AF MLWRLAIVGFPFVV+LVIPGLMYGRTLM LAR +R+
Sbjct: 121 LSEKVPNFLMNAATFLGSYIAAFAMLWRLAIVGFPFVVVLVIPGLMYGRTLMGLARTIRE 180
Query: 216 EYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGLKQGLAKGLAIGSNGVT 275
EYNKAGTIAEQAISSIRTVY+FVGESKT ++FS+ALQGSV+LGL+QGLAKGLAIGSNG+
Sbjct: 181 EYNKAGTIAEQAISSIRTVYSFVGESKTRSDFSAALQGSVKLGLRQGLAKGLAIGSNGIV 240
Query: 276 FGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIM 335
F IWSF+ +YGSRMVMYHGA+GGTVF VGA+IAVGGL+LGAGL NLKYFSEA +AGERIM
Sbjct: 241 FAIWSFMSWYGSRMVMYHGARGGTVFVVGAAIAVGGLSLGAGLSNLKYFSEACSAGERIM 300
Query: 336 EMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALV 395
EMIKRVPKIDSD+MEG+ILENV GEVEF+ V+FAYPSRPESIIFKDF L IPAGKTVALV
Sbjct: 301 EMIKRVPKIDSDNMEGQILENVSGEVEFRHVEFAYPSRPESIIFKDFNLKIPAGKTVALV 360
Query: 396 GGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKE 455
GGSGSGKST I+LLQRFY PLGGEI+LDGV+IDKLQLKW+RSQMGLVSQEPALFAT+IKE
Sbjct: 361 GGSGSGKSTAISLLQRFYDPLGGEILLDGVAIDKLQLKWVRSQMGLVSQEPALFATTIKE 420
Query: 456 NILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAII 515
NILFGKEDA MEEV+ AAKASNAHNFI QLPQ YDTQVGERGVQMSGGQKQRIAIARAII
Sbjct: 421 NILFGKEDAVMEEVVAAAKASNAHNFICQLPQGYDTQVGERGVQMSGGQKQRIAIARAII 480
Query: 516 KAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQV 575
KAP+ILLLDEATSALDSESERVVQEALD A VGRTTIIIAHRLSTIRNAD+I VVQ+GQ+
Sbjct: 481 KAPQILLLDEATSALDSESERVVQEALDNAAVGRTTIIIAHRLSTIRNADIITVVQNGQI 540
Query: 576 METGSHDELIQAESGLYTSLVRLQTTTPDDNNNATMHSLASKSSNMDMNSTSSRRLSIVS 635
METGSHD+LIQ + GLYTSLVRLQ T + + + S A+ S++MD++STSSRRLS+VS
Sbjct: 541 METGSHDDLIQNDDGLYTSLVRLQQTEKSEAPSLPISSTAAISTSMDLHSTSSRRLSLVS 600
Query: 636 LSSSANSFAQGRGASQSNEEDIKKLPVPSFRRLVALNAPEWKQATLGCVGATLFGAVQPI 695
SSSANS A R A + + PVPSFRRL+A+N PEWKQA++GC+ A LFGAVQP+
Sbjct: 601 RSSSANSNAPSRPAGEVFTAAEQDFPVPSFRRLLAMNLPEWKQASMGCLSAVLFGAVQPV 660
Query: 696 YAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINIIQHYNFAYMGEHLTKRI 755
YAFAMGSMISVYF +HDEIKKKT YA CF+GLAVF+ ++NI QHYNFA MGE+LTKR+
Sbjct: 661 YAFAMGSMISVYFFPEHDEIKKKTRTYALCFVGLAVFSFLVNISQHYNFAAMGEYLTKRV 720
Query: 756 RERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFT 815
RERM SKILTFEVGWFDQD+NS+GAICSRLAKDANVVRSLVGDR ALLVQT SAV IA T
Sbjct: 721 RERMFSKILTFEVGWFDQDQNSTGAICSRLAKDANVVRSLVGDRMALLVQTFSAVIIACT 780
Query: 816 MGLFIAWRLALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTIT 875
MGL IAWRLA+VMIAVQPL+I+C+Y RRVLLKSMS K IKAQ ESSKLAAEAVSNLR IT
Sbjct: 781 MGLVIAWRLAVVMIAVQPLIIVCYYTRRVLLKSMSAKGIKAQEESSKLAAEAVSNLRIIT 840
Query: 876 AFSSQHRILKMLEKAQQGPRRESIRQSWYAGIGLAFSQSLASCTWALDFWYGGRLIADGY 935
AFSSQ RILKMLE AQ+GP RESIRQSW+AGIGL SQSL +CTWALDFWYGG+LI+ GY
Sbjct: 841 AFSSQARILKMLEAAQEGPLRESIRQSWFAGIGLGTSQSLMTCTWALDFWYGGKLISQGY 900
Query: 936 ISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRYTKIEPEDPEGHQP 995
ISSKALFETFMILVSTGRVIADAGSMT+D+AKGSDAVGSVFAV+DRYT+IEPEDP+GHQP
Sbjct: 901 ISSKALFETFMILVSTGRVIADAGSMTSDLAKGSDAVGSVFAVLDRYTRIEPEDPDGHQP 960
Query: 996 ERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYD 1055
E+I G +E+++V FAYPARPDV++F+ FSI I+AGKSTALVGQSGSGKSTIIGLIERFYD
Sbjct: 961 EKIIGRVEIRDVDFAYPARPDVLVFKSFSINIDAGKSTALVGQSGSGKSTIIGLIERFYD 1020
Query: 1056 PLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAA 1115
PL+G VKID +DIRSYHLR LR+HIALVSQEPTLFAGTIRENIAYGASD+IDESEI+EAA
Sbjct: 1021 PLQGSVKIDGKDIRSYHLRVLRKHIALVSQEPTLFAGTIRENIAYGASDKIDESEIIEAA 1080
Query: 1116 KAANAHDFIAGLNEGYDT 1133
+AANAHDFIAGL GYDT
Sbjct: 1081 RAANAHDFIAGLKNGYDT 1098
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449449176|ref|XP_004142341.1| PREDICTED: ABC transporter B family member 15-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1761 bits (4561), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 841/1116 (75%), Positives = 971/1116 (87%), Gaps = 10/1116 (0%)
Query: 23 SIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPI-DVFTHNINK 81
SIFMHAD VD FLM LG+IGA+GDGF+TPLVL ++S MNNIG S+ I D F NI+K
Sbjct: 28 SIFMHADAVDKFLMTLGFIGAVGDGFTTPLVLVVSSHLMNNIGHTSSSSITDSFVANIDK 87
Query: 82 NTVHLLYLALGSWVACFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEV 141
N V LLY+A G +V+CFLEGYCWTRTGERQA RMRARYLKAVLRQDVGYFDLHVTST+EV
Sbjct: 88 NAVALLYVACGGFVSCFLEGYCWTRTGERQAARMRARYLKAVLRQDVGYFDLHVTSTSEV 147
Query: 142 ITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLWRLAIVGFPFVVLLVIPGLM 201
ITSVSNDSLVIQD +SEK+PNF+MNA++F G YL A ++ WRLA+VGFPFVVLLVIPGL+
Sbjct: 148 ITSVSNDSLVIQDVLSEKIPNFLMNAAIFIGSYLAAVILFWRLAVVGFPFVVLLVIPGLL 207
Query: 202 YGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGLKQ 261
YG+TLM LARK + Y KAGT+AEQAISSIRTVYAF GE KTI+E+SSAL+ SV+ G+KQ
Sbjct: 208 YGKTLMGLARKSMEGYQKAGTVAEQAISSIRTVYAFAGEDKTISEYSSALERSVKFGIKQ 267
Query: 262 GLAKGLAIGSNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNL 321
G +KGLAIGSNGV+F IWSF+ +YGSRMVMYHGAQGGTVFAVGA+IAVGGL++G+GL N+
Sbjct: 268 GFSKGLAIGSNGVSFAIWSFMSWYGSRMVMYHGAQGGTVFAVGAAIAVGGLSIGSGLSNI 327
Query: 322 KYFSEAMAAGERIMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKD 381
KYFSEA AAGERIME+I RVPKIDS MEG+IL N+ G+V+F V FAYPSRP++I+ D
Sbjct: 328 KYFSEACAAGERIMEVINRVPKIDSADMEGQILRNISGQVQFTNVHFAYPSRPDTIVLND 387
Query: 382 FCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGL 441
LTIPAG+TVALVGGSGSGKSTVI+LLQRFY P+ G I +DG+ I+KLQLKWLRSQMGL
Sbjct: 388 LTLTIPAGQTVALVGGSGSGKSTVISLLQRFYDPISGSISVDGIGIEKLQLKWLRSQMGL 447
Query: 442 VSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMS 501
VSQEPALF TSIKENILFGKED SM++V+EA KASNAH+FI PQ YDTQVGERGVQMS
Sbjct: 448 VSQEPALFGTSIKENILFGKEDGSMDDVVEAGKASNAHSFISLFPQGYDTQVGERGVQMS 507
Query: 502 GGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTI 561
GGQKQRIAIARAIIK PRILLLDEATSALDSESER+VQEALDKA VGRTTIIIAHRLST+
Sbjct: 508 GGQKQRIAIARAIIKRPRILLLDEATSALDSESERIVQEALDKAAVGRTTIIIAHRLSTV 567
Query: 562 RNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQTTTPDDNNNATMHSLASKSSNM 621
RNAD+IAV+QDGQV E G HD+LI+ ++GLYTSLV LQ +P + + +T + ++
Sbjct: 568 RNADLIAVLQDGQVREIGPHDDLIKNQTGLYTSLVHLQHKSPPEPSLSTTSHIEKITT-- 625
Query: 622 DMNSTSSRRLSIVSLSSSANSFA----QGRGASQSNEEDIKKLPVPSFRRLVALNAPEWK 677
+TSSRRLS++S S+SANS A SN E ++LP+PSFRRL+ALN PEWK
Sbjct: 626 ---TTSSRRLSLLSHSNSANSGASDLVHETAPPSSNIEKEQELPIPSFRRLLALNLPEWK 682
Query: 678 QATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVIN 737
QA +GC GA +FGAVQP+YAFAMGSMISVYFL H+EIK KT YA CF+GLA+ +L++N
Sbjct: 683 QALMGCSGAVVFGAVQPLYAFAMGSMISVYFLKSHEEIKAKTRTYALCFVGLALLSLLVN 742
Query: 738 IIQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVG 797
IIQHYNFAYMGE+LTKR+RE MLSKILTFE+GWFDQDE+SSGA+CSRL+KDANVVRSLVG
Sbjct: 743 IIQHYNFAYMGEYLTKRVREMMLSKILTFEIGWFDQDEHSSGALCSRLSKDANVVRSLVG 802
Query: 798 DRTALLVQTISAVTIAFTMGLFIAWRLALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQ 857
DR AL+VQTISAVTIAFTMGL I+W+LALVMIAVQPLVI CFY RRVLLK MSNKAIKAQ
Sbjct: 803 DRLALIVQTISAVTIAFTMGLVISWKLALVMIAVQPLVICCFYTRRVLLKKMSNKAIKAQ 862
Query: 858 AESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSWYAGIGLAFSQSLAS 917
+SSKLAAEAVSNLRTITAFSSQ RILKMLEKAQ+GP+RESI+QSWYAGIGL SQSL +
Sbjct: 863 EQSSKLAAEAVSNLRTITAFSSQERILKMLEKAQEGPKRESIKQSWYAGIGLGCSQSLTT 922
Query: 918 CTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFA 977
C+WALDFWYGG+L+A G ++KALFETFMILVSTGRVIADAGSMT+D+AKGS+AVGSVF
Sbjct: 923 CSWALDFWYGGKLVAQGQTTAKALFETFMILVSTGRVIADAGSMTSDLAKGSEAVGSVFD 982
Query: 978 VMDRYTKIEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVG 1037
V+DR+TKIEP+DPEG++P ++ G IE+ NV F YP+RP+ MIF GFSI IEAGKSTALVG
Sbjct: 983 VLDRFTKIEPDDPEGYKPNKLIGQIEINNVDFNYPSRPEAMIFRGFSISIEAGKSTALVG 1042
Query: 1038 QSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIREN 1097
QSGSGKSTIIGLIERFYDP+KG + ID RDI+SYHLR+LR+HIALVSQEPTLFAGTIREN
Sbjct: 1043 QSGSGKSTIIGLIERFYDPIKGTINIDGRDIKSYHLRTLRKHIALVSQEPTLFAGTIREN 1102
Query: 1098 IAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133
I YG S +DESEI+EAAKA+NAHDFI+GL +GY+T
Sbjct: 1103 IIYGVSKTVDESEIIEAAKASNAHDFISGLKDGYET 1138
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357496247|ref|XP_003618412.1| ABC transporter B family member [Medicago truncatula] gi|355493427|gb|AES74630.1| ABC transporter B family member [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1736 bits (4495), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 861/1158 (74%), Positives = 989/1158 (85%), Gaps = 28/1158 (2%)
Query: 1 MSGEKKARGSSEVTKTKNGSFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKF 60
M G + S V K KNGSFRSIFMHAD +D F M G IGAIGDG TPLVLF+TS+
Sbjct: 1 MGGGDQKNVSINVKKKKNGSFRSIFMHADVLDCFFMAFGLIGAIGDGLMTPLVLFITSRI 60
Query: 61 MNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACFL---EGYCWTRTGERQATRMRA 117
MN+IG +S F HNIN+N + LLYLA S+ ACFL EGYCWTRTGERQA RMRA
Sbjct: 61 MNSIGTISGSSSTNFVHNINENALVLLYLACASFAACFLGTSEGYCWTRTGERQAARMRA 120
Query: 118 RYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVA 177
RYLKAVLRQ+V YFDLHVTST+EVITSVSNDSLVIQD +SEK+PNF+MNAS+F G Y+VA
Sbjct: 121 RYLKAVLRQEVAYFDLHVTSTSEVITSVSNDSLVIQDVLSEKVPNFLMNASMFIGSYIVA 180
Query: 178 FLMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAF 237
F +LWRLAIVGFPFVVLLVIPG MYGRTLM LARKMR+EYN+AGTIAEQAISSIRTVY+F
Sbjct: 181 FALLWRLAIVGFPFVVLLVIPGFMYGRTLMGLARKMREEYNQAGTIAEQAISSIRTVYSF 240
Query: 238 VGESKTINEFSSALQGSVQLGLKQGLAKGLAIGSNGVTFGIWSFLCYYGSRMVMYHGAQG 297
GESKTI FS+AL+GSV+LGLKQGLAKGLAIGSNGV F IWSF+ +YGSRMVMYHGA+G
Sbjct: 241 AGESKTIAAFSNALEGSVKLGLKQGLAKGLAIGSNGVVFAIWSFMSFYGSRMVMYHGAKG 300
Query: 298 GTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEILENV 357
GTVFAVGAS+A+GGLALGAGL N+KYFSEA AGERIMEMIKRVPKIDS+++EGEILE V
Sbjct: 301 GTVFAVGASLALGGLALGAGLSNVKYFSEASVAGERIMEMIKRVPKIDSENIEGEILEKV 360
Query: 358 LGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLG 417
LGEVEF V+F YPSRPES++ DFCL +P+GKTVALVGGSGSGKSTV++LLQRFY P+G
Sbjct: 361 LGEVEFNHVEFVYPSRPESVVLNDFCLKVPSGKTVALVGGSGSGKSTVVSLLQRFYDPIG 420
Query: 418 GEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASN 477
GEI+LDGV+I KLQLKWLRSQMGLVSQEPALFATSI ENILFG+EDA+ EE+++AAKASN
Sbjct: 421 GEILLDGVAIHKLQLKWLRSQMGLVSQEPALFATSIMENILFGREDATYEEIVDAAKASN 480
Query: 478 AHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERV 537
AHNFI LPQ YDTQVGERGVQMSGGQKQRIAIARAIIK P+ILLLDEATSALDSESERV
Sbjct: 481 AHNFISMLPQGYDTQVGERGVQMSGGQKQRIAIARAIIKMPKILLLDEATSALDSESERV 540
Query: 538 VQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVR 597
VQEALDKA VGRTTIIIAHRLSTI+NAD+IAVVQ+G++METGSH+ L+Q E+ LYTSLVR
Sbjct: 541 VQEALDKAAVGRTTIIIAHRLSTIQNADIIAVVQNGKIMETGSHESLMQNENSLYTSLVR 600
Query: 598 LQTT-------TPDDNNNATMHSLASKSSNM--------------DMNSTSSRRLSIVSL 636
LQ T TP N M + +S+ D+ + ++ IV+
Sbjct: 601 LQQTRNDQTDDTPSIMNRGHMQNTSSRRLVSRSSSSFNSMTHGGDDILNYNNVVEDIVNN 660
Query: 637 SSSANSFAQGRGASQSNEEDIKKLPVPSFRRLVALNAPEWKQATLGCVGATLFGAVQPIY 696
+ + + +E +K VPSFRRL+A+N PEWKQA LGC+ A LFGA+QP+Y
Sbjct: 661 VVVVDDRNNHNSINNTKKEKVK---VPSFRRLLAMNVPEWKQACLGCINAVLFGAIQPVY 717
Query: 697 AFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINIIQHYNFAYMGEHLTKRIR 756
+FA+GS++SVYFL DHDEIKK+ IY FCFLGLAV +LV+N++QHY+FAYMGE+LTKR+R
Sbjct: 718 SFALGSVVSVYFLEDHDEIKKQIRIYVFCFLGLAVISLVVNVLQHYSFAYMGEYLTKRVR 777
Query: 757 ERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTM 816
ERM SKILTFEVGWFD+D NS+G++CSRLAKDANVVRSLVGDR AL+VQTISAV IAFTM
Sbjct: 778 ERMFSKILTFEVGWFDEDRNSTGSVCSRLAKDANVVRSLVGDRLALVVQTISAVVIAFTM 837
Query: 817 GLFIAWRLALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITA 876
GL IAWRLA+VMIAVQP++I CFY RRVLLK+MS+KAIKAQ E SK+AAEAVSNLRTI A
Sbjct: 838 GLIIAWRLAIVMIAVQPVIICCFYTRRVLLKNMSSKAIKAQDECSKIAAEAVSNLRTINA 897
Query: 877 FSSQHRILKMLEKAQQGPRRESIRQSWYAGIGLAFSQSLASCTWALDFWYGGRLIADGYI 936
FSSQ RILKMLEKAQQGP ESIRQSW+AGIGLA SQSL CTWALDFWYGG+L++ GYI
Sbjct: 898 FSSQDRILKMLEKAQQGPSHESIRQSWFAGIGLACSQSLNFCTWALDFWYGGKLVSQGYI 957
Query: 937 SSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRYTKIEPEDPEGHQPE 996
S+KALFETFMILVSTGRVIADAGSMT D+AKGSDAVGSVFAV+DRYTKIEP+D E +Q E
Sbjct: 958 SAKALFETFMILVSTGRVIADAGSMTNDLAKGSDAVGSVFAVLDRYTKIEPDDLESYQAE 1017
Query: 997 RITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDP 1056
++ G IEL++V+F+YPARP+VMIF+GFSIKI+AGKSTALVG+SGSGKSTIIGLIERFYDP
Sbjct: 1018 KLIGKIELRDVYFSYPARPNVMIFQGFSIKIDAGKSTALVGESGSGKSTIIGLIERFYDP 1077
Query: 1057 LKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDE-IDESEIVEAA 1115
LKG V ID RDI++Y+LRSLR+HIALVSQEPTLF+GTIRENIAYGA D+ +DESEI+EA+
Sbjct: 1078 LKGIVTIDGRDIKTYNLRSLRKHIALVSQEPTLFSGTIRENIAYGAYDDTVDESEIIEAS 1137
Query: 1116 KAANAHDFIAGLNEGYDT 1133
KA+NAHDFI+ L +GYDT
Sbjct: 1138 KASNAHDFISSLKDGYDT 1155
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357496215|ref|XP_003618396.1| ABC transporter B family member [Medicago truncatula] gi|355493411|gb|AES74614.1| ABC transporter B family member [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1734 bits (4490), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 841/1141 (73%), Positives = 970/1141 (85%), Gaps = 32/1141 (2%)
Query: 18 NGSFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTH 77
NGSF+SIFMHAD +D F MV G IG+IGDG S PL+LF+ + MN+IG S + F H
Sbjct: 18 NGSFKSIFMHADVLDWFFMVFGLIGSIGDGISVPLLLFIAGRLMNSIGSASGASSNNFVH 77
Query: 78 NINKNTVHLLYLALGSWVACFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTS 137
+INKN V LYLA S+VACFLEGYCWTRTGERQA RMR RYLKA+LRQDV YFDLH+TS
Sbjct: 78 DINKNAVLFLYLACASFVACFLEGYCWTRTGERQAARMRVRYLKAILRQDVAYFDLHITS 137
Query: 138 TAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLWRLAIVGFPFVVLLVI 197
T+EVITSVSNDSLVIQD ISEK+PNF+MNAS+F G Y+ AF +LWRLAIVGFPF+VLLVI
Sbjct: 138 TSEVITSVSNDSLVIQDVISEKVPNFLMNASMFLGSYIAAFALLWRLAIVGFPFLVLLVI 197
Query: 198 PGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQL 257
PG MYGR M LARK+R+EYNKAGTIA+QAISSIRTVY+F GESKTI FS+AL+GSV+L
Sbjct: 198 PGFMYGRISMGLARKIREEYNKAGTIAQQAISSIRTVYSFAGESKTIAAFSNALEGSVKL 257
Query: 258 GLKQGLAKGLAIGSNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAG 317
GLKQGLAKG+ IGSNG+ F +WS + YYGSRMVMYHGA+GGTV++VG SI +GGLA G
Sbjct: 258 GLKQGLAKGIGIGSNGLVFAVWSLMSYYGSRMVMYHGAKGGTVYSVGISITLGGLAFGTS 317
Query: 318 LPNLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESI 377
L N+KYFSEA AAGERIME+IKRVPKIDS++MEGEI+E VLGEVEF V+F YPSRPES+
Sbjct: 318 LSNVKYFSEASAAGERIMEVIKRVPKIDSENMEGEIIEKVLGEVEFNHVEFVYPSRPESV 377
Query: 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRS 437
I DFCL +P+GKTVALVGGSGSGKSTV++LLQRFY P+GGEI+LDGV+I KLQLKWLRS
Sbjct: 378 ILNDFCLKVPSGKTVALVGGSGSGKSTVVSLLQRFYDPIGGEILLDGVAIHKLQLKWLRS 437
Query: 438 QMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERG 497
QMGLVSQEPALFATSIKENILFG+EDA+ EE+++AAKASNAHNFI LPQ YDTQVGERG
Sbjct: 438 QMGLVSQEPALFATSIKENILFGREDATYEEIVDAAKASNAHNFISLLPQGYDTQVGERG 497
Query: 498 VQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHR 557
VQMSGGQKQRIAIARAIIK P+ILLLDEATSALDSESERVVQEALDKA VGRTTIIIAHR
Sbjct: 498 VQMSGGQKQRIAIARAIIKMPKILLLDEATSALDSESERVVQEALDKAAVGRTTIIIAHR 557
Query: 558 LSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQTTTPDDNNNATMHSLASK 617
LSTI+NAD+IAVVQ+G VME GSHD L+Q ++ LYTSLVRLQ T D +++ S+ ++
Sbjct: 558 LSTIQNADIIAVVQNGLVMEMGSHDSLMQNDNSLYTSLVRLQQTRNDQSDDTP--SIMNR 615
Query: 618 SSNMDMNSTSSRRLSIVSLSSSANSFAQGR------------------GASQSNEEDIK- 658
M TSSRRL VS SSS NS G N D K
Sbjct: 616 DH---MEITSSRRL--VSHSSSFNSMTHGGDDIVNYNNDVEDTVNNDVAVVDHNNNDHKY 670
Query: 659 -----KLPVPSFRRLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHD 713
+ VPSFRRL+A+N PEWKQA LGC A LFGA+QP+Y+FAMGS+ISVYF+ DHD
Sbjct: 671 NKKRENVEVPSFRRLLAMNGPEWKQACLGCFNAVLFGAIQPVYSFAMGSVISVYFIEDHD 730
Query: 714 EIKKKTSIYAFCFLGLAVFTLVINIIQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQ 773
EIKK+ IY FCFLGLAV ++VIN++QHY+FAYMGE+LTKR+RE+M SKILTFEVGWFD+
Sbjct: 731 EIKKQIRIYGFCFLGLAVISMVINMLQHYSFAYMGEYLTKRVREKMFSKILTFEVGWFDE 790
Query: 774 DENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWRLALVMIAVQP 833
D+NS+G++CSRLAKDANVVRSLVGDR AL+VQTISAV IAFTMGL IAW+LA+VMIAVQP
Sbjct: 791 DQNSTGSVCSRLAKDANVVRSLVGDRLALVVQTISAVVIAFTMGLIIAWKLAIVMIAVQP 850
Query: 834 LVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQG 893
L+I CFY RRVLLK+MS+KAIKAQ + SK+AAEAVSNLRTI AFSSQ RILKMLEKAQQG
Sbjct: 851 LIIYCFYTRRVLLKNMSSKAIKAQDQCSKIAAEAVSNLRTINAFSSQDRILKMLEKAQQG 910
Query: 894 PRRESIRQSWYAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGR 953
P ES+RQSW+AGIGLA SQ L TWALDFWYGG+L++ GYIS+KALF+TFMILVSTGR
Sbjct: 911 PSHESVRQSWFAGIGLACSQCLNYSTWALDFWYGGKLVSQGYISAKALFKTFMILVSTGR 970
Query: 954 VIADAGSMTTDIAKGSDAVGSVFAVMDRYTKIEPEDPEGHQPERITGNIELQNVHFAYPA 1013
VIADAGSMT+D+AKGSDA+GSVFA++DRYTKI+P D G++ E++ G IEL +VHFAYPA
Sbjct: 971 VIADAGSMTSDLAKGSDAIGSVFAILDRYTKIKPNDLRGYKAEKLIGIIELFDVHFAYPA 1030
Query: 1014 RPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHL 1073
RP+VMIF+GFSIKI+AGKSTALVG+SGSGKSTIIGLIERFYDPLKG V ID RDI++Y+L
Sbjct: 1031 RPNVMIFQGFSIKIDAGKSTALVGESGSGKSTIIGLIERFYDPLKGIVTIDGRDIKTYNL 1090
Query: 1074 RSLRRHIALVSQEPTLFAGTIRENIAYGA-SDEIDESEIVEAAKAANAHDFIAGLNEGYD 1132
RSLR HIALVSQEPTLF+GTIRENIAYGA D++DESEI+EA+KAA+AHDFI+ L +GYD
Sbjct: 1091 RSLREHIALVSQEPTLFSGTIRENIAYGAYDDKVDESEIIEASKAASAHDFISSLKDGYD 1150
Query: 1133 T 1133
T
Sbjct: 1151 T 1151
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297818436|ref|XP_002877101.1| abc transporter family protein [Arabidopsis lyrata subsp. lyrata] gi|297322939|gb|EFH53360.1| abc transporter family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1729 bits (4478), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 848/1116 (75%), Positives = 974/1116 (87%), Gaps = 8/1116 (0%)
Query: 19 GSFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHN 78
GS RSIFMHADGVD LM LG IGA+GDGF+TPLVL +TSK MNN+GG S+ D F +
Sbjct: 18 GSVRSIFMHADGVDWLLMSLGLIGAVGDGFTTPLVLLITSKLMNNLGG-SSFNTDTFMQS 76
Query: 79 INKNTVHLLYLALGSWVACFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTST 138
I+KN+V LLY+A GSWV CFLEGYCWTRTGERQ RMR +YL+AVLRQDVGYFDLHVTST
Sbjct: 77 ISKNSVALLYVACGSWVVCFLEGYCWTRTGERQTARMREKYLRAVLRQDVGYFDLHVTST 136
Query: 139 AEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLWRLAIVGFPFVVLLVIP 198
++VITSVS+DS VIQD +SEKLPNF+M+AS F G Y+V F++LWRLAIVG PF+VLLVIP
Sbjct: 137 SDVITSVSSDSFVIQDVLSEKLPNFLMSASTFVGSYIVGFILLWRLAIVGLPFIVLLVIP 196
Query: 199 GLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLG 258
GLMYGR L+S++RK+R+EYN+AG +AEQAISS+RTVYAF GE KTI++FS+ALQGSV+LG
Sbjct: 197 GLMYGRALISISRKIREEYNEAGFVAEQAISSVRTVYAFSGERKTISKFSTALQGSVKLG 256
Query: 259 LKQGLAKGLAIGSNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGL 318
+KQGLAKG+ IGSNG+TF +W F+ +YGSRMVMYHGAQGGTVFAV A+IA+GG++LG GL
Sbjct: 257 IKQGLAKGITIGSNGITFAMWGFMSWYGSRMVMYHGAQGGTVFAVTAAIAIGGVSLGGGL 316
Query: 319 PNLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESII 378
NLKYF EA + GERIME+I RVPKIDSD+ +G LE + GEVEFK V+F YPSR E+ I
Sbjct: 317 SNLKYFFEAASVGERIMEVINRVPKIDSDNPDGHKLEKIRGEVEFKNVKFVYPSRLETSI 376
Query: 379 FKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438
F DFCL +P+GKTVALVGGSGSGKSTVI+LLQRFY PL GEI++DGVSIDKLQ+KWLRSQ
Sbjct: 377 FDDFCLRVPSGKTVALVGGSGSGKSTVISLLQRFYDPLAGEILIDGVSIDKLQVKWLRSQ 436
Query: 439 MGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGV 498
MGLVSQEPALFAT+IKENILFGKEDASM++V+EAAKASNAHNFI QLP Y+TQV ERGV
Sbjct: 437 MGLVSQEPALFATTIKENILFGKEDASMDDVVEAAKASNAHNFISQLPNGYETQVRERGV 496
Query: 499 QMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRL 558
QMSGGQKQRIAIARAIIK+P ILLLDEATSALDSESERVVQEAL+ A +GRTTI+IAHRL
Sbjct: 497 QMSGGQKQRIAIARAIIKSPTILLLDEATSALDSESERVVQEALENASIGRTTILIAHRL 556
Query: 559 STIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQTTTPDD-NNNATMHSLASK 617
STIRNADVI+VV++G ++ETGSHDEL++ G Y +LV LQ D N + M ++
Sbjct: 557 STIRNADVISVVKNGHIVETGSHDELMENLDGQYATLVHLQQIEKQDINVSVQMGPISDP 616
Query: 618 SSNMDMNSTSSRRLSIVSLSSSANSFAQGRGASQSNEEDIKKLPVPSFRRLVALNAPEWK 677
S ++ SS R+S +S SSSANS G ++ ED K +PSF+RL+A+N PEWK
Sbjct: 617 SKDI----RSSSRVSTLSRSSSANSVT-GPSIVKNLSED-NKPQLPSFKRLLAMNLPEWK 670
Query: 678 QATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVIN 737
QA GC+ ATLFGA+QP YA+++GSM+SVYFLT HDEIK+KT IYA F+GLAV + +IN
Sbjct: 671 QALYGCISATLFGAIQPAYAYSLGSMVSVYFLTSHDEIKEKTRIYALSFVGLAVLSFLIN 730
Query: 738 IIQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVG 797
I QHYNFAYMGE+LTKRIRERMLSK+LTFEVGWFD+DENSSGAICSRLAKDANVVRSLVG
Sbjct: 731 ISQHYNFAYMGEYLTKRIRERMLSKVLTFEVGWFDRDENSSGAICSRLAKDANVVRSLVG 790
Query: 798 DRTALLVQTISAVTIAFTMGLFIAWRLALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQ 857
DR ALLVQT+SAVTIAFTMGL IAWRLALVMIAVQP++I+CFY RRVLLKSMS KAIKAQ
Sbjct: 791 DRMALLVQTVSAVTIAFTMGLVIAWRLALVMIAVQPVIIVCFYTRRVLLKSMSKKAIKAQ 850
Query: 858 AESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSWYAGIGLAFSQSLAS 917
ESSKLAAEAVSN+RTITAFSSQ RI+KMLEKAQ+ PRRESIRQSW+AG GLA SQSL S
Sbjct: 851 DESSKLAAEAVSNVRTITAFSSQERIMKMLEKAQESPRRESIRQSWFAGFGLAMSQSLTS 910
Query: 918 CTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFA 977
CTWALDFWYGGRLI DGYI++KALFETFMILVSTGRVIADAGSMTTD+AKGSDAVGSVFA
Sbjct: 911 CTWALDFWYGGRLIQDGYITAKALFETFMILVSTGRVIADAGSMTTDLAKGSDAVGSVFA 970
Query: 978 VMDRYTKIEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVG 1037
V+DRYT I+PEDP+G++ ERITG +E +VHF+YP RPDV+IF+ FSIKIE GKSTA+VG
Sbjct: 971 VLDRYTSIDPEDPDGYETERITGQVEFVDVHFSYPTRPDVIIFKNFSIKIEEGKSTAIVG 1030
Query: 1038 QSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIREN 1097
SGSGKSTIIGLIERFYDPLKG VKID RDIRSYHLRSLR+HIALVSQEPTLFAGTIREN
Sbjct: 1031 PSGSGKSTIIGLIERFYDPLKGIVKIDGRDIRSYHLRSLRQHIALVSQEPTLFAGTIREN 1090
Query: 1098 IAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133
I YGASD+IDE+EI+EAAKAANAHDFI L +GYDT
Sbjct: 1091 IIYGASDKIDEAEIIEAAKAANAHDFITSLTDGYDT 1126
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15229473|ref|NP_189475.1| ABC transporter B family member 15 [Arabidopsis thaliana] gi|75334996|sp|Q9LHD1.1|AB15B_ARATH RecName: Full=ABC transporter B family member 15; Short=ABC transporter ABCB.15; Short=AtABCB15; AltName: Full=Multidrug resistance protein 13; AltName: Full=P-glycoprotein 15 gi|11994581|dbj|BAB02627.1| multidrug resistance p-glycoprotein [Arabidopsis thaliana] gi|332643915|gb|AEE77436.1| ABC transporter B family member 15 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1710 bits (4428), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 849/1116 (76%), Positives = 971/1116 (87%), Gaps = 7/1116 (0%)
Query: 19 GSFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHN 78
GS RSIFMHADGVD LM LG IGA+GDGF+TPLVL +TSK MNNIGG S+ D F +
Sbjct: 18 GSVRSIFMHADGVDWLLMGLGLIGAVGDGFTTPLVLLITSKLMNNIGG-SSFNTDTFMQS 76
Query: 79 INKNTVHLLYLALGSWVACFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTST 138
I+KN+V LLY+A GSWV CFLEGYCWTRTGERQ RMR +YL+AVLRQDVGYFDLHVTST
Sbjct: 77 ISKNSVALLYVACGSWVVCFLEGYCWTRTGERQTARMREKYLRAVLRQDVGYFDLHVTST 136
Query: 139 AEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLWRLAIVGFPFVVLLVIP 198
++VITSVS+DS VIQD +SEKLPNF+M+AS F G Y+V F++LWRLAIVG PF+VLLVIP
Sbjct: 137 SDVITSVSSDSFVIQDVLSEKLPNFLMSASTFVGSYIVGFILLWRLAIVGLPFIVLLVIP 196
Query: 199 GLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLG 258
GLMYGR L+S++RK+R+EYN+AG +AEQAISS+RTVYAF GE KTI++FS+ALQGSV+LG
Sbjct: 197 GLMYGRALISISRKIREEYNEAGFVAEQAISSVRTVYAFSGERKTISKFSTALQGSVKLG 256
Query: 259 LKQGLAKGLAIGSNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGL 318
+KQGLAKG+ IGSNG+TF +W F+ +YGSRMVMYHGAQGGTVFAV A+IA+GG++LG GL
Sbjct: 257 IKQGLAKGITIGSNGITFAMWGFMSWYGSRMVMYHGAQGGTVFAVAAAIAIGGVSLGGGL 316
Query: 319 PNLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESII 378
NLKYF EA + GERIME+I RVPKIDSD+ +G LE + GEVEFK V+F YPSR E+ I
Sbjct: 317 SNLKYFFEAASVGERIMEVINRVPKIDSDNPDGHKLEKIRGEVEFKNVKFVYPSRLETSI 376
Query: 379 FKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438
F DFCL +P+GKTVALVGGSGSGKSTVI+LLQRFY PL GEI++DGVSIDKLQ+KWLRSQ
Sbjct: 377 FDDFCLRVPSGKTVALVGGSGSGKSTVISLLQRFYDPLAGEILIDGVSIDKLQVKWLRSQ 436
Query: 439 MGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGV 498
MGLVSQEPALFAT+IKENILFGKEDASM++V+EAAKASNAHNFI QLP Y+TQVGERGV
Sbjct: 437 MGLVSQEPALFATTIKENILFGKEDASMDDVVEAAKASNAHNFISQLPNGYETQVGERGV 496
Query: 499 QMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRL 558
QMSGGQKQRIAIARAIIK+P ILLLDEATSALDSESERVVQEAL+ A +GRTTI+IAHRL
Sbjct: 497 QMSGGQKQRIAIARAIIKSPTILLLDEATSALDSESERVVQEALENASIGRTTILIAHRL 556
Query: 559 STIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQTTTPDDNNNATMHSLASKS 618
STIRNADVI+VV++G ++ETGSHDEL++ G Y++LV LQ D N + S
Sbjct: 557 STIRNADVISVVKNGHIVETGSHDELMENIDGQYSTLVHLQQIEKQDINVSVKIGPISDP 616
Query: 619 SNMDMNSTSSRRLSIVSLSSSANSFAQGRGASQSNEEDIKKLPVPSFRRLVALNAPEWKQ 678
S NS+ R+S +S SSSANS G ++ ED K +PSF+RL+A+N PEWKQ
Sbjct: 617 SKDIRNSS---RVSTLSRSSSANSVT-GPSTIKNLSED-NKPQLPSFKRLLAMNLPEWKQ 671
Query: 679 ATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINI 738
A GC+ ATLFGA+QP YA+++GSM+SVYFLT HDEIK+KT IYA F+GLAV + +INI
Sbjct: 672 ALYGCISATLFGAIQPAYAYSLGSMVSVYFLTSHDEIKEKTRIYALSFVGLAVLSFLINI 731
Query: 739 IQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGD 798
QHYNFAYMGE+LTKRIRERMLSK+LTFEVGWFD+DENSSGAICSRLAKDANVVRSLVGD
Sbjct: 732 SQHYNFAYMGEYLTKRIRERMLSKVLTFEVGWFDRDENSSGAICSRLAKDANVVRSLVGD 791
Query: 799 RTALLVQTISAVTIAFTMGLFIAWRLALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQA 858
R AL+VQT+SAVTIAFTMGL IAWRLALVMIAVQP++I+CFY RRVLLKSMS KAIKAQ
Sbjct: 792 RMALVVQTVSAVTIAFTMGLVIAWRLALVMIAVQPVIIVCFYTRRVLLKSMSKKAIKAQD 851
Query: 859 ESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSWYAGIGLAFSQSLASC 918
ESSKLAAEAVSN+RTITAFSSQ RI+KMLEKAQ+ PRRESIRQSW+AG GLA SQSL SC
Sbjct: 852 ESSKLAAEAVSNVRTITAFSSQERIMKMLEKAQESPRRESIRQSWFAGFGLAMSQSLTSC 911
Query: 919 TWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAV 978
TWALDFWYGGRLI DGYI++KALFETFMILVSTGRVIADAGSMTTD+AKGSDAVGSVFAV
Sbjct: 912 TWALDFWYGGRLIQDGYITAKALFETFMILVSTGRVIADAGSMTTDLAKGSDAVGSVFAV 971
Query: 979 MDRYTKIEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQ 1038
+DRYT I+PEDP+G++ ERITG +E +V F+YP RPDV+IF+ FSIKIE GKSTA+VG
Sbjct: 972 LDRYTSIDPEDPDGYETERITGQVEFLDVDFSYPTRPDVIIFKNFSIKIEEGKSTAIVGP 1031
Query: 1039 SGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENI 1098
SGSGKSTIIGLIERFYDPLKG VKID RDIRSYHLRSLRRHIALVSQEPTLFAGTIRENI
Sbjct: 1032 SGSGKSTIIGLIERFYDPLKGIVKIDGRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENI 1091
Query: 1099 AYGA-SDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133
YG SD+IDE+EI+EAAKAANAHDFI L EGYDT
Sbjct: 1092 IYGGVSDKIDEAEIIEAAKAANAHDFITSLTEGYDT 1127
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224141005|ref|XP_002323866.1| multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa] gi|222866868|gb|EEF03999.1| multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1709 bits (4427), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 818/1116 (73%), Positives = 963/1116 (86%), Gaps = 18/1116 (1%)
Query: 29 DGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLY 88
+ +D FLMVLG IG+IG+GFS+PL+ F++SK +NN+ G + DVF+ +INKN + L Y
Sbjct: 8 NSLDCFLMVLGLIGSIGEGFSSPLIFFVSSKLLNNLAGADSAS-DVFSDSINKNALALCY 66
Query: 89 LALGSWVACFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSND 148
LA G W+ CF+EGYCWTRTGERQA RMR RYLKAVLRQDVGYFDLHVTSTAE+IT VSND
Sbjct: 67 LACGQWLVCFIEGYCWTRTGERQAMRMRTRYLKAVLRQDVGYFDLHVTSTAEIITGVSND 126
Query: 149 SLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLWRLAIVGFPFVVLLVIPGLMYGRTLMS 208
S VIQD +SEK+PNF+MN S F GCY++AF++LWRL IV FPF++LLVIPG+MYG+ LM
Sbjct: 127 SFVIQDVLSEKVPNFLMNVSTFIGCYIMAFILLWRLTIVMFPFILLLVIPGVMYGKILMG 186
Query: 209 LARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGLKQGLAKGLA 268
++RK++ EY KA TIAEQAISS RT+YAFVGE+K I +S ALQ ++LGL+QG+AKGLA
Sbjct: 187 ISRKIKREYTKAETIAEQAISSTRTIYAFVGETKAIAAYSEALQLPLKLGLRQGMAKGLA 246
Query: 269 IGSNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAM 328
+GSN V F +WSF+ YYGSRMVMYHG +GGTVF GA + VGGLA GAGL N+KYF++A
Sbjct: 247 VGSNAVIFAVWSFMSYYGSRMVMYHGCRGGTVFNAGACVMVGGLAFGAGLSNMKYFADAC 306
Query: 329 AAGERIMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPA 388
+AGERIME+I+RVPKID D+MEGEIL+N GEVEF+ V+FAYPSRPESIIF+DFCL IPA
Sbjct: 307 SAGERIMEVIRRVPKIDLDNMEGEILDNFRGEVEFRQVKFAYPSRPESIIFEDFCLQIPA 366
Query: 389 GKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPAL 448
GK+VALVGGSGSGKST IALL+RFY PLGGEI+LDG++IDKLQLKWLRSQ+GLVSQEPAL
Sbjct: 367 GKSVALVGGSGSGKSTAIALLKRFYDPLGGEILLDGIAIDKLQLKWLRSQIGLVSQEPAL 426
Query: 449 FATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRI 508
FAT+IKENILFGKE A+M+EV+EAAKASNAHNFI Q P Y TQVGERGVQ+SGGQKQRI
Sbjct: 427 FATTIKENILFGKETATMDEVVEAAKASNAHNFISQFPHGYSTQVGERGVQLSGGQKQRI 486
Query: 509 AIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIA 568
AIARA+IK+PRILLLDEATSALD+ESER+VQEALD+A VGRTTIIIAHRLSTIRN D+IA
Sbjct: 487 AIARAVIKSPRILLLDEATSALDTESERIVQEALDRAAVGRTTIIIAHRLSTIRNVDIIA 546
Query: 569 VVQDGQVMETGSHDELIQAESGLYTSLVRLQTT-TPDDNNNATMHSLASKS-----SNMD 622
VVQDG+V E GSH+ELI+ E G+YTSLVRLQ T T N T S++S + +N
Sbjct: 547 VVQDGRVTEIGSHNELIENEYGMYTSLVRLQQTRTEKPCENVTKTSVSSSAIPVMKTNRT 606
Query: 623 MNSTSSRRLSIVSLSSSANSFAQGRGASQSNEEDI----KKLPVPSFRRLVALNAPEWKQ 678
+ TSSRR LS SANS A + S S EE++ +K PSF RL+ALN PEWKQ
Sbjct: 607 SSDTSSRR-----LSHSANSVAPSK-VSISAEENVAMEEQKFSAPSFLRLLALNLPEWKQ 660
Query: 679 ATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINI 738
A+ GC+GA LFG VQP+YAF +GSMISV+FL DH+EIK+K IY+ FLGL F+L+IN+
Sbjct: 661 ASFGCLGAILFGGVQPVYAFVLGSMISVFFLKDHNEIKEKIKIYSLFFLGLTFFSLIINV 720
Query: 739 IQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGD 798
IQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRL KDA+ VRS+VGD
Sbjct: 721 IQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLTKDADAVRSVVGD 780
Query: 799 RTALLVQTISAVTIAFTMGLFIAWRLALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQA 858
R AL+VQT+SAVTIA+TMGL IAWRLA+VMIAVQP++I C+Y R VLLKSMS KAIKAQ
Sbjct: 781 RIALVVQTMSAVTIAWTMGLVIAWRLAIVMIAVQPIIIACYYTRSVLLKSMSRKAIKAQD 840
Query: 859 ESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSWYAGIGLAFSQSLASC 918
ESSKLAA+AVSNLRTITAFSSQ RILKMLEK Q+GPRRE+IRQS +AGIGL+ S+S+ SC
Sbjct: 841 ESSKLAADAVSNLRTITAFSSQERILKMLEKVQEGPRRENIRQSLFAGIGLSTSRSIMSC 900
Query: 919 TWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAV 978
T ALD+WYGG+LIA GY++ KA+FETF+ILVSTGRVIADAGSMT D+AKGSD++ SVFAV
Sbjct: 901 TLALDYWYGGKLIAQGYMTYKAMFETFLILVSTGRVIADAGSMTMDLAKGSDSIRSVFAV 960
Query: 979 MDRYTKIEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQ 1038
+DR TKIEPEDP+G++PE+ITG++ELQ+V FAYPARP+VM+F+ FSI IEAGKSTALVGQ
Sbjct: 961 LDRCTKIEPEDPDGYRPEKITGHVELQDVDFAYPARPNVMVFKDFSINIEAGKSTALVGQ 1020
Query: 1039 SGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENI 1098
SGSGKSTIIGLIER+YDPLKG V+ID RDI+SY+LRSLR+ IALVSQEPTLFAGTI+ENI
Sbjct: 1021 SGSGKSTIIGLIERYYDPLKGTVRIDGRDIKSYNLRSLRKCIALVSQEPTLFAGTIKENI 1080
Query: 1099 AYGA-SDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133
YGA SD+I+ESEI+EAAKAANAHDFI+GL +GY+T
Sbjct: 1081 IYGASSDKINESEIIEAAKAANAHDFISGLKDGYET 1116
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1133 | ||||||
| TAIR|locus:2088897 | 1240 | ABCB15 "ATP-binding cassette B | 0.990 | 0.904 | 0.713 | 0.0 | |
| UNIPROTKB|Q6YUU5 | 1245 | LOC_Os02g09720 "Putative multi | 0.978 | 0.890 | 0.654 | 0.0 | |
| TAIR|locus:2088927 | 1240 | ABCB17 "ATP-binding cassette B | 0.982 | 0.897 | 0.658 | 0.0 | |
| TAIR|locus:2088942 | 1225 | ABCB18 "ATP-binding cassette B | 0.976 | 0.902 | 0.654 | 0.0 | |
| TAIR|locus:504955759 | 1229 | ABCB22 "ATP-binding cassette B | 0.979 | 0.903 | 0.658 | 0.0 | |
| TAIR|locus:2088912 | 1228 | ABCB16 "ATP-binding cassette B | 0.977 | 0.902 | 0.641 | 0.0 | |
| UNIPROTKB|Q8GU81 | 1234 | mdr17 "Uncharacterized protein | 0.971 | 0.892 | 0.477 | 6.1e-284 | |
| TAIR|locus:2090734 | 1252 | ABCB19 "ATP-binding cassette B | 0.990 | 0.896 | 0.433 | 1.3e-249 | |
| UNIPROTKB|Q0JCP1 | 1259 | Os04g0459000 "Os04g0459000 pro | 0.987 | 0.888 | 0.425 | 1.8e-245 | |
| TAIR|locus:2057961 | 1286 | ABCB1 "ATP-binding cassette B1 | 0.980 | 0.863 | 0.408 | 2.2e-231 |
| TAIR|locus:2088897 ABCB15 "ATP-binding cassette B15" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4086 (1443.4 bits), Expect = 0., P = 0.
Identities = 807/1131 (71%), Positives = 923/1131 (81%)
Query: 4 EKKARGSSEVTKTKNGSFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNN 63
E+K G +++ GS RSIFMHADGVD LM LG IGA+GDGF+TPLVL +TSK MNN
Sbjct: 5 EEKESGRNKMNCF--GSVRSIFMHADGVDWLLMGLGLIGAVGDGFTTPLVLLITSKLMNN 62
Query: 64 IGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACFLEGYCWTRTGERQATRMRARYLKAV 123
IGG S+ D F +I+KN+V LLY+A GSWV CFLEGYCWTRTGERQ RMR +YL+AV
Sbjct: 63 IGG-SSFNTDTFMQSISKNSVALLYVACGSWVVCFLEGYCWTRTGERQTARMREKYLRAV 121
Query: 124 LRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLWR 183
LRQDVGYFDLHVTST++VITSVS+DS VIQD +SEKLPNF+M+AS F G Y+V F++LWR
Sbjct: 122 LRQDVGYFDLHVTSTSDVITSVSSDSFVIQDVLSEKLPNFLMSASTFVGSYIVGFILLWR 181
Query: 184 LAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKT 243
LAIVG PF+VLLVIPGLMYGR L+S++RK+R+EYN+AG +AEQAISS+RTVYAF GE KT
Sbjct: 182 LAIVGLPFIVLLVIPGLMYGRALISISRKIREEYNEAGFVAEQAISSVRTVYAFSGERKT 241
Query: 244 INEFSSALQGSVXXXXXXXXXXXXXXXSNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFXX 303
I++FS+ALQGSV SNG+TF +W F+ +YGSRMVMYHGAQGGTVF
Sbjct: 242 ISKFSTALQGSVKLGIKQGLAKGITIGSNGITFAMWGFMSWYGSRMVMYHGAQGGTVFAV 301
Query: 304 XXXXXXXXXXXXXXXPNLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEILENVLGEVEF 363
NLKYF EA + GERIME+I RVPKIDSD+ +G LE + GEVEF
Sbjct: 302 AAAIAIGGVSLGGGLSNLKYFFEAASVGERIMEVINRVPKIDSDNPDGHKLEKIRGEVEF 361
Query: 364 KCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILD 423
K V+F YPSR E+ IF DFCL +P+GKTVALVGGSGSGKSTVI+LLQRFY PL GEI++D
Sbjct: 362 KNVKFVYPSRLETSIFDDFCLRVPSGKTVALVGGSGSGKSTVISLLQRFYDPLAGEILID 421
Query: 424 GVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIR 483
GVSIDKLQ+KWLRSQMGLVSQEPALFAT+IKENILFGKEDASM++V+EAAKASNAHNFI
Sbjct: 422 GVSIDKLQVKWLRSQMGLVSQEPALFATTIKENILFGKEDASMDDVVEAAKASNAHNFIS 481
Query: 484 QLPQQYDTQVGERGVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESERVVQEALD 543
QLP Y+TQVGERGVQMSGG P ILLLDEATSALDSESERVVQEAL+
Sbjct: 482 QLPNGYETQVGERGVQMSGGQKQRIAIARAIIKSPTILLLDEATSALDSESERVVQEALE 541
Query: 544 KAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQTTTP 603
A +GRTTI+IAHRLSTIRNADVI+VV++G ++ETGSHDEL++ G Y++LV LQ
Sbjct: 542 NASIGRTTILIAHRLSTIRNADVISVVKNGHIVETGSHDELMENIDGQYSTLVHLQQIEK 601
Query: 604 DDNNNATMHSLASKSSNMDMXXXXXXXXXXXXXXXXXXXFAQGRGASQSNEEDIKKLPVP 663
D N + S S D+ G ++ ED K +P
Sbjct: 602 QDINVSVKIGPISDPSK-DIRNSSRVSTLSRSSSANSVT---GPSTIKNLSED-NKPQLP 656
Query: 664 SFRRLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYA 723
SF+RL+A+N PEWKQA GC+ ATLFGA+QP YA+++GSM+SVYFLT HDEIK+KT IYA
Sbjct: 657 SFKRLLAMNLPEWKQALYGCISATLFGAIQPAYAYSLGSMVSVYFLTSHDEIKEKTRIYA 716
Query: 724 FCFLGLAVFTLVINIIQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICS 783
F+GLAV + +INI QHYNFAYMGE+LTKRIRERMLSK+LTFEVGWFD+DENSSGAICS
Sbjct: 717 LSFVGLAVLSFLINISQHYNFAYMGEYLTKRIRERMLSKVLTFEVGWFDRDENSSGAICS 776
Query: 784 RLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWRLALVMIAVQPLVIICFYARR 843
RLAKDANVVRSLVGDR AL+VQT+SAVTIAFTMGL IAWRLALVMIAVQP++I+CFY RR
Sbjct: 777 RLAKDANVVRSLVGDRMALVVQTVSAVTIAFTMGLVIAWRLALVMIAVQPVIIVCFYTRR 836
Query: 844 VLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSW 903
VLLKSMS KAIKAQ ESSKLAAEAVSN+RTITAFSSQ RI+KMLEKAQ+ PRRESIRQSW
Sbjct: 837 VLLKSMSKKAIKAQDESSKLAAEAVSNVRTITAFSSQERIMKMLEKAQESPRRESIRQSW 896
Query: 904 YAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTT 963
+AG GLA SQSL SCTWALDFWYGGRLI DGYI++KALFETFMILVSTGRVIADAGSMTT
Sbjct: 897 FAGFGLAMSQSLTSCTWALDFWYGGRLIQDGYITAKALFETFMILVSTGRVIADAGSMTT 956
Query: 964 DIAKGSDAVGSVFAVMDRYTKIEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGF 1023
D+AKGSDAVGSVFAV+DRYT I+PEDP+G++ ERITG +E +V F+YP RPDV+IF+ F
Sbjct: 957 DLAKGSDAVGSVFAVLDRYTSIDPEDPDGYETERITGQVEFLDVDFSYPTRPDVIIFKNF 1016
Query: 1024 SIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALV 1083
SIKIE GKSTA+VG SGSGKSTIIGLIERFYDPLKG VKID RDIRSYHLRSLRRHIALV
Sbjct: 1017 SIKIEEGKSTAIVGPSGSGKSTIIGLIERFYDPLKGIVKIDGRDIRSYHLRSLRRHIALV 1076
Query: 1084 SQEPTLFAGTIRENIAYGA-SDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133
SQEPTLFAGTIRENI YG SD+IDE+EI+EAAKAANAHDFI L EGYDT
Sbjct: 1077 SQEPTLFAGTIRENIIYGGVSDKIDEAEIIEAAKAANAHDFITSLTEGYDT 1127
|
|
| UNIPROTKB|Q6YUU5 LOC_Os02g09720 "Putative multidrug resistance protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 3731 (1318.4 bits), Expect = 0., P = 0.
Identities = 729/1114 (65%), Positives = 880/1114 (78%)
Query: 20 SFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNI 79
SF ++FMHAD D+ LMVLG +GA+GDG STP++L +TS+ N++G +++ + F+ +
Sbjct: 19 SFMTVFMHADAADVALMVLGLLGAMGDGISTPVMLLITSRIFNDLGSGADI-VKEFSSKV 77
Query: 80 NKNTVHLLYLALGSWVACFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTA 139
N N +L++LA SWV FLEGYCW RT ERQA+RMRARYL+AVLRQDV YFDL STA
Sbjct: 78 NVNARNLVFLAAASWVMAFLEGYCWARTAERQASRMRARYLRAVLRQDVEYFDLKKGSTA 137
Query: 140 EVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLWRLAIVGFPFVVLLVIPG 199
EVITSVSNDSLV+QD +SEK+PNFVMNA++F G Y V F +LWRL +V P VVLL+IPG
Sbjct: 138 EVITSVSNDSLVVQDVLSEKVPNFVMNAAMFAGSYAVGFALLWRLTLVALPSVVLLIIPG 197
Query: 200 LMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVXXXX 259
MYGR L+ LAR++R++Y + G IAEQA+SS RTVY+FV E T+ +FS+AL+ S
Sbjct: 198 FMYGRILVGLARRIREQYTRPGAIAEQAVSSARTVYSFVAERTTMAQFSAALEESARLGL 257
Query: 260 XXXXXXXXXXXSNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFXXXXXXXXXXXXXXXXXP 319
SNG+TF IW+F +YGSR+VMYHG QGGTVF
Sbjct: 258 KQGLAKGIAVGSNGITFAIWAFNVWYGSRLVMYHGYQGGTVFAVSAAIVVGGLALGSGLS 317
Query: 320 NLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIF 379
N+KYFSEA +A ERI+E+I+RVPKIDS+S GE L NV GEVEF+ V+F YPSRPES IF
Sbjct: 318 NVKYFSEASSAAERILEVIRRVPKIDSESDTGEELANVTGEVEFRNVEFCYPSRPESPIF 377
Query: 380 KDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439
F L +PAG+TVALVGGSGSGKSTVIALL+RFY P GE+++DGV I +L+LKWLR+QM
Sbjct: 378 VSFNLRVPAGRTVALVGGSGSGKSTVIALLERFYDPSAGEVMVDGVDIRRLRLKWLRAQM 437
Query: 440 GLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQ 499
GLVSQEPALFATSI+ENILFGKE+A+ EEV+ AAKA+NAHNFI QLPQ YDTQVGERGVQ
Sbjct: 438 GLVSQEPALFATSIRENILFGKEEATAEEVVAAAKAANAHNFISQLPQGYDTQVGERGVQ 497
Query: 500 MSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLS 559
MSGG P+ILLLDEATSALD+ESERVVQEALD A +GRTTI+IAHRLS
Sbjct: 498 MSGGQKQRIAIARAILKSPKILLLDEATSALDTESERVVQEALDLASMGRTTIVIAHRLS 557
Query: 560 TIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQTTTPDDNNNATMHSLASKSS 619
TIRNAD+IAV+Q G+V E G HDELI ++GLY+SLVRLQ T D+N + +S
Sbjct: 558 TIRNADIIAVMQSGEVKELGPHDELIANDNGLYSSLVRLQQTR--DSNEIDEIGVTGSTS 615
Query: 620 NMDMXXXXXXXXXXXXXXXXXXXFAQGRGASQSNEEDIKKLPVPSFRRLVALNAPEWKQA 679
+ + G N E KLPVPSFRRL+ LNAPEWKQA
Sbjct: 616 AVGQSSSHSMSRRFSAASRSSSARSLGDARDDDNTEK-PKLPVPSFRRLLMLNAPEWKQA 674
Query: 680 TLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINII 739
+G A +FG +QP YA+AMGSMISVYFLTDH EIK KT YA F+GLAV + +INI
Sbjct: 675 LMGSFSAVVFGGIQPAYAYAMGSMISVYFLTDHAEIKDKTRTYALIFVGLAVLSFLINIG 734
Query: 740 QHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDR 799
QHYNF MGE+LTKRIRE+ML+KILTFE+GWFD+DENSSGAICS+LAKDANVVRSLVGDR
Sbjct: 735 QHYNFGAMGEYLTKRIREQMLAKILTFEIGWFDRDENSSGAICSQLAKDANVVRSLVGDR 794
Query: 800 TALLVQTISAVTIAFTMGLFIAWRLALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAE 859
AL++QTISAV IA TMGL IAWRLALVMIAVQPL+I+CFYARRVLLKSMS K+I AQAE
Sbjct: 795 MALVIQTISAVLIACTMGLVIAWRLALVMIAVQPLIIVCFYARRVLLKSMSKKSIHAQAE 854
Query: 860 SSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSWYAGIGLAFSQSLASCT 919
SSKLAAEAVSNLRTITAFSSQ RIL++ E++Q GPR+ESIRQSW+AG+GL S SL +CT
Sbjct: 855 SSKLAAEAVSNLRTITAFSSQERILRLFEQSQDGPRKESIRQSWFAGLGLGTSMSLMTCT 914
Query: 920 WALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVM 979
WALDFWYGGRL+A+ +IS+K LF+TFMILVSTGRVIADAGSMTTD+AKG+DAV SVFAV+
Sbjct: 915 WALDFWYGGRLMAEHHISAKELFQTFMILVSTGRVIADAGSMTTDLAKGADAVASVFAVL 974
Query: 980 DRYTKIEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQS 1039
DR T+I+P++P+G++PE++ G ++++ V FAYP+RPDV+IF+GF++ I+ GKSTALVGQS
Sbjct: 975 DRETEIDPDNPQGYKPEKLKGEVDIRGVDFAYPSRPDVIIFKGFTLSIQPGKSTALVGQS 1034
Query: 1040 GSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIA 1099
GSGKSTIIGLIERFYDP++G VKID RDI++Y+LR+LRRHI LVSQEPTLFAGTIRENI
Sbjct: 1035 GSGKSTIIGLIERFYDPIRGSVKIDGRDIKAYNLRALRRHIGLVSQEPTLFAGTIRENIV 1094
Query: 1100 YGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133
YG ++ E+EI +AA++ANAHDFI+ L +GYDT
Sbjct: 1095 YG-TETASEAEIEDAARSANAHDFISNLKDGYDT 1127
|
|
| TAIR|locus:2088927 ABCB17 "ATP-binding cassette B17" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3730 (1318.1 bits), Expect = 0., P = 0.
Identities = 738/1121 (65%), Positives = 878/1121 (78%)
Query: 15 KTKN-GSFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPID 73
K K+ GS RSIFMHADGVD LM LG IGA+GDGF TP+V+F+ + +NN+G S+
Sbjct: 13 KMKSFGSIRSIFMHADGVDWILMALGLIGAVGDGFITPVVVFIFNTLLNNLG-TSSSNNK 71
Query: 74 VFTHNINKNTVHLLYLALGSWVACFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDL 133
F I+KN V LLY+A GSWV CFLEGYCWTRTGERQA RMR +YL+AVLRQDVGYFDL
Sbjct: 72 TFMQTISKNVVALLYVACGSWVICFLEGYCWTRTGERQAARMREKYLRAVLRQDVGYFDL 131
Query: 134 HVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLWRLAIVGFPFVV 193
HVTST++VITS+S+DSLVIQD +SEKLPNF+MNAS F Y+V+F+++WRL IVGFPF++
Sbjct: 132 HVTSTSDVITSISSDSLVIQDFLSEKLPNFLMNASAFVASYIVSFILMWRLTIVGFPFII 191
Query: 194 LLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQG 253
LL++PGLMYGR L+S++RK+ ++YN+AG+IAEQAISS+RTVYAF E+K I +FS+AL+G
Sbjct: 192 LLLVPGLMYGRALVSISRKIHEQYNEAGSIAEQAISSVRTVYAFGSENKMIGKFSTALRG 251
Query: 254 SVXXXXXXXXXXXXXXXSNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFXXXXXXXXXXXX 313
SV SNGVT IW+FL +YGSR+VM HG++GGTVF
Sbjct: 252 SVKLGLRQGLAKGITIGSNGVTHAIWAFLTWYGSRLVMNHGSKGGTVFVVISCITYGGVS 311
Query: 314 XXXXXPNLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSR 373
NLKYFSEA A ERI+E+IKRVP IDS+ EG+ILE + GEVEF V+F Y SR
Sbjct: 312 LGQSLSNLKYFSEAFVAWERILEVIKRVPDIDSNKKEGQILERMKGEVEFNHVKFTYLSR 371
Query: 374 PESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLK 433
PE+ IF D CL IPAGKTVALVGGSGSGKSTVI+LLQRFY P+ GEI++DGVSIDKLQ+
Sbjct: 372 PETTIFDDLCLKIPAGKTVALVGGSGSGKSTVISLLQRFYDPIAGEILIDGVSIDKLQVN 431
Query: 434 WLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQV 493
WLRSQMGLVSQEP LFATSI ENILFGKEDAS++EV+EAAKASNAH FI Q P Y TQV
Sbjct: 432 WLRSQMGLVSQEPVLFATSITENILFGKEDASLDEVVEAAKASNAHTFISQFPLGYKTQV 491
Query: 494 GERGVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESERVVQEALDKAVVGRTTII 553
GERGVQMSGG P+ILLLDEATSALDSESERVVQE+LD A +GRTTI+
Sbjct: 492 GERGVQMSGGQKQRIAIARAIIKSPKILLLDEATSALDSESERVVQESLDNASIGRTTIV 551
Query: 554 IAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQTTTPDDNNNATMHS 613
IAHRLSTIRNADVI V+ +GQ++ETGSH+EL++ G YTSLV LQ ++ +N ++
Sbjct: 552 IAHRLSTIRNADVICVIHNGQIVETGSHEELLKRIDGQYTSLVSLQQME-NEESNVNINV 610
Query: 614 LASKSSNMDMXXXXXXXXXXXXXXXXXXXFAQGRGASQSNEEDIKKLPVPSFRRLVALNA 673
+K M + S D + L VPSF RL+ +N
Sbjct: 611 SVTKDQVMSLSKDFKYSQHNSIGSTSSSIVTN---VSDLIPNDNQPL-VPSFTRLMVMNR 666
Query: 674 PEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFT 733
PEWK A GC+ A L G +QP+ A++ GS+ISV+FLT HD+IK+KT IY F+GLA+F+
Sbjct: 667 PEWKHALYGCLSAALVGVLQPVSAYSAGSVISVFFLTSHDQIKEKTRIYVLLFVGLAIFS 726
Query: 734 LVINIIQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVR 793
++NI QHY FAYMGE+LTKRIRE+MLSKILTFEV WFD D+NSSGAICSRLAKDANVVR
Sbjct: 727 FLVNISQHYGFAYMGEYLTKRIREQMLSKILTFEVNWFDIDDNSSGAICSRLAKDANVVR 786
Query: 794 SLVGDRTALLVQTISAVTIAFTMGLFIAWRLALVMIAVQPLVIICFYARRVLLKSMSNKA 853
S+VGDR +LLVQTISAV IA +GL IAWRLA+VMI+VQPL+++CFY +RVLLKS+S KA
Sbjct: 787 SMVGDRMSLLVQTISAVIIACIIGLVIAWRLAIVMISVQPLIVVCFYTQRVLLKSLSEKA 846
Query: 854 IKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSWYAGIGLAFSQ 913
KAQ ESSKLAAEAVSN+RTITAFSSQ RI+K+L+K Q+GPRRES+ +SW AGI L S+
Sbjct: 847 SKAQDESSKLAAEAVSNIRTITAFSSQERIIKLLKKVQEGPRRESVHRSWLAGIVLGTSR 906
Query: 914 SLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVG 973
SL +CT AL+FWYGGRLIADG I SKA FE F+I V+TGRVIADAG+MTTD+A+G DAVG
Sbjct: 907 SLITCTSALNFWYGGRLIADGKIVSKAFFEIFLIFVTTGRVIADAGTMTTDLARGLDAVG 966
Query: 974 SVFAVMDRYTKIEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKST 1033
SVFAV+DR T IEP++P+G+ E+I G I NV FAYP RPDV+IFE FSI+I+ GKST
Sbjct: 967 SVFAVLDRCTTIEPKNPDGYVAEKIKGQITFLNVDFAYPTRPDVVIFENFSIEIDEGKST 1026
Query: 1034 ALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGT 1093
A+VG SGSGKSTIIGLIERFYDPLKG VKID RDIRSYHLRSLR++I+LVSQEP LFAGT
Sbjct: 1027 AIVGTSGSGKSTIIGLIERFYDPLKGTVKIDGRDIRSYHLRSLRKYISLVSQEPMLFAGT 1086
Query: 1094 IRENIAYGA-SDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133
IRENI YG SD+IDESEI+EAAKAANAHDFI L+ GYDT
Sbjct: 1087 IRENIMYGGTSDKIDESEIIEAAKAANAHDFITSLSNGYDT 1127
|
|
| TAIR|locus:2088942 ABCB18 "ATP-binding cassette B18" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3725 (1316.3 bits), Expect = 0., P = 0.
Identities = 730/1116 (65%), Positives = 869/1116 (77%)
Query: 19 GSFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHN 78
GS RSIFMHADGVD LM LG IGA+GDGF TP++ F+ SK +NN+GG S+ + F
Sbjct: 6 GSIRSIFMHADGVDWMLMALGLIGAVGDGFITPIIFFICSKLLNNVGG-SSFDDETFMQT 64
Query: 79 INKNTVHLLYLALGSWVACFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTST 138
+ KN V L+Y+A SWV CF+EGYCWTRTGERQA +MR +YLKAVLRQDVGYFDLHVTST
Sbjct: 65 VAKNAVALVYVACASWVICFIEGYCWTRTGERQAAKMREKYLKAVLRQDVGYFDLHVTST 124
Query: 139 AEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLWRLAIVGFPFVVLLVIP 198
++VITSVS+DSLVIQD +SEKLPNF+MN S F Y+V FL+LWRL IVGFPF++LL+IP
Sbjct: 125 SDVITSVSSDSLVIQDFLSEKLPNFLMNTSAFVASYIVGFLLLWRLTIVGFPFIILLLIP 184
Query: 199 GLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVXXX 258
GLMYGR L+ ++ K+R+EYN+AG+IAEQ ISS+RTVYAF E K I +FS+ALQGSV
Sbjct: 185 GLMYGRALIRISMKIREEYNEAGSIAEQVISSVRTVYAFGSEKKMIEKFSTALQGSVKLG 244
Query: 259 XXXXXXXXXXXXSNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFXXXXXXXXXXXXXXXXX 318
SNG+T+ IW FL +YGSRMVM HG++GGTV
Sbjct: 245 LRQGLAKGIAIGSNGITYAIWGFLTWYGSRMVMNHGSKGGTVSSVIVCVTFGGTSLGQSL 304
Query: 319 PNLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESII 378
NLKYFSEA GERIM++I RVP IDSD++EG+ILE GEVEF V+F YPSRPE+ I
Sbjct: 305 SNLKYFSEAFVVGERIMKVINRVPGIDSDNLEGQILEKTRGEVEFNHVKFTYPSRPETPI 364
Query: 379 FKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438
F D CL +P+GKTVALVGGSGSGKSTVI+LLQRFY P+ GEI++DG+ I+KLQ+KWLRSQ
Sbjct: 365 FDDLCLRVPSGKTVALVGGSGSGKSTVISLLQRFYDPIAGEILIDGLPINKLQVKWLRSQ 424
Query: 439 MGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGV 498
MGLVSQEP LFATSIKENILFGKEDASM+EV+EAAKASNAH+FI Q P Y TQVGERGV
Sbjct: 425 MGLVSQEPVLFATSIKENILFGKEDASMDEVVEAAKASNAHSFISQFPNSYQTQVGERGV 484
Query: 499 QMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRL 558
Q+SGG P ILLLDEATSALDSESERVVQEALD A +GRTTI+IAHRL
Sbjct: 485 QLSGGQKQRIAIARAIIKSPIILLLDEATSALDSESERVVQEALDNASIGRTTIVIAHRL 544
Query: 559 STIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQTTTPDDNNNATMHSLASKS 618
STIRNADVI VV +G+++ETGSH+EL++ G YTSLVRLQ ++++ ++ + S
Sbjct: 545 STIRNADVICVVHNGRIIETGSHEELLEKLDGQYTSLVRLQQVDNKESDHISVEEGQASS 604
Query: 619 SNMDMXXXXXXXXXXXXXXXXXXXFAQGRGASQSNEEDIKKLPVPSFRRLVALNAPEWKQ 678
+ D+ R + +D K L VPSF+RL+++N PEWK
Sbjct: 605 LSKDLKYSPKEFIHSTSSNIV-------RDFPNLSPKDGKSL-VPSFKRLMSMNRPEWKH 656
Query: 679 ATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINI 738
A GC+GA LFGAVQPIY+++ GSM+SVYFL HD+IK+KT IY F+GLA+FT + NI
Sbjct: 657 ALYGCLGAALFGAVQPIYSYSSGSMVSVYFLASHDQIKEKTRIYVLLFVGLALFTFLSNI 716
Query: 739 IQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGD 798
QHY FAYMGE+LTKRIRERML KILTFEV WFD+DENSSGAICSRLAKDAN+VRSLVGD
Sbjct: 717 SQHYGFAYMGEYLTKRIRERMLGKILTFEVNWFDKDENSSGAICSRLAKDANMVRSLVGD 776
Query: 799 RTALLVQTISAVTIAFTMGLFIAWRLALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQA 858
R +LLVQTISAV+I +GL I+WR ++VM++VQP++++CFY +RVLLKSMS AIK Q
Sbjct: 777 RMSLLVQTISAVSITCAIGLVISWRFSIVMMSVQPVIVVCFYTQRVLLKSMSRNAIKGQD 836
Query: 859 ESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSWYAGIGLAFSQSLASC 918
ESSKLAAEAVSN+RTITAFSSQ RI+ +L+ Q+GPR++S RQSW AGI L SQSL +C
Sbjct: 837 ESSKLAAEAVSNIRTITAFSSQERIINLLKMVQEGPRKDSARQSWLAGIMLGTSQSLITC 896
Query: 919 TWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAV 978
AL+FWYGG+LIADG + SK E F+I STGRVIA+AG+MT D+ KGSDAV SVFAV
Sbjct: 897 VSALNFWYGGKLIADGKMMSKEFLEIFLIFASTGRVIAEAGTMTKDLVKGSDAVASVFAV 956
Query: 979 MDRYTKIEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQ 1038
+DR T IEPE+P+G+ P+++ G I NV FAYP RPDV+IF+ FSI IE GKSTA+VG
Sbjct: 957 LDRNTTIEPENPDGYVPKKVKGQISFSNVDFAYPTRPDVIIFQNFSIDIEDGKSTAIVGP 1016
Query: 1039 SGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENI 1098
SGSGKSTII LIERFYDPLKG VKID RDIRS HLRSLR+HIALVSQEPTLFAGTIRENI
Sbjct: 1017 SGSGKSTIISLIERFYDPLKGIVKIDGRDIRSCHLRSLRQHIALVSQEPTLFAGTIRENI 1076
Query: 1099 AYG-ASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133
YG AS++IDESEI+EAAKAANAHDFI L+ GYDT
Sbjct: 1077 MYGGASNKIDESEIIEAAKAANAHDFITSLSNGYDT 1112
|
|
| TAIR|locus:504955759 ABCB22 "ATP-binding cassette B22" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3722 (1315.3 bits), Expect = 0., P = 0.
Identities = 736/1117 (65%), Positives = 884/1117 (79%)
Query: 19 GSFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHN 78
GS RSIFMHA+ VD+ LM LG IGA+GDGF TP++ F+T +N+IG S+ F H
Sbjct: 5 GSVRSIFMHANSVDLVLMGLGLIGAVGDGFITPIIFFITGLLLNDIGD-SSFGDKTFMHA 63
Query: 79 INKNTVHLLYLALGSWVACFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTST 138
I KN V LLY+A S V CF+EGYCWTRTGERQA+RMR +YL+AVLRQDVGYFDLHVTST
Sbjct: 64 IMKNAVALLYVAGASLVICFVEGYCWTRTGERQASRMREKYLRAVLRQDVGYFDLHVTST 123
Query: 139 AEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLWRLAIVGFPFVVLLVIP 198
++VITSVS+D+LVIQD +SEKLPNF+M+AS F Y+V F+MLWRL IVGFPF +LL+IP
Sbjct: 124 SDVITSVSSDTLVIQDVLSEKLPNFLMSASAFVASYIVGFIMLWRLTIVGFPFFILLLIP 183
Query: 199 GLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVXXX 258
GLM GR L++++RK+R+EYN+AG+IAEQAIS +RTVYAF E K I++FS+AL+GSV
Sbjct: 184 GLMCGRALINISRKIREEYNEAGSIAEQAISLVRTVYAFGSERKMISKFSAALEGSVKLG 243
Query: 259 XXXXXXXXXXXXSNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFXXXXXXXXXXXXXXXXX 318
SNGVT+ IW F+ +YGSRMVMYHGA+GGT+F
Sbjct: 244 LRQGIAKGIAIGSNGVTYAIWGFMTWYGSRMVMYHGAKGGTIFAVIICITYGGTSLGRGL 303
Query: 319 PNLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESII 378
NLKYFSEA+ AGERI+E+IKRVP IDSD+ G++LEN+ GEV+FK V+F Y SRPE+ I
Sbjct: 304 SNLKYFSEAVVAGERIIEVIKRVPDIDSDNPRGQVLENIKGEVQFKHVKFMYSSRPETPI 363
Query: 379 FKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438
F D CL IP+GK+VALVGGSGSGKSTVI+LLQRFY P+ GEI++DGVSI KLQ+KWLRSQ
Sbjct: 364 FDDLCLRIPSGKSVALVGGSGSGKSTVISLLQRFYDPIVGEILIDGVSIKKLQVKWLRSQ 423
Query: 439 MGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGV 498
MGLVSQEPALFATSI+ENILFGKEDAS +EV+EAAK+SNAH+FI Q P Y TQVGERGV
Sbjct: 424 MGLVSQEPALFATSIEENILFGKEDASFDEVVEAAKSSNAHDFISQFPLGYKTQVGERGV 483
Query: 499 QMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRL 558
QMSGG P +LLLDEATSALDSESERVVQEALD A +GRTTI+IAHRL
Sbjct: 484 QMSGGQKQRISIARAIIKSPTLLLLDEATSALDSESERVVQEALDNATIGRTTIVIAHRL 543
Query: 559 STIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQTTTPDDNN-NATMHSLASK 617
STIRN DVI V ++GQ++ETGSH+EL++ G YTSLVRLQ +++N N ++ +
Sbjct: 544 STIRNVDVICVFKNGQIVETGSHEELMENVDGQYTSLVRLQIMENEESNDNVSVSMREGQ 603
Query: 618 SSNMDMXXXXXXXXXXXXXXXXXXXFAQGRGASQSNEEDIKKLPVPSFRRLVALNAPEWK 677
SN + + + S +D KK PSF+RL+A+N PEWK
Sbjct: 604 FSNFNKDVKYSSRLSIQSRSSLFATSSIDTNLAGSIPKD-KK---PSFKRLMAMNKPEWK 659
Query: 678 QATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVIN 737
A GC+ A L+GA+ PIYA+A GSM+SVYFLT HDE+K+KT IY F+GLAV +I+
Sbjct: 660 HALYGCLSAVLYGALHPIYAYASGSMVSVYFLTSHDEMKEKTRIYVLLFVGLAVLCFLIS 719
Query: 738 IIQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVG 797
IIQ Y+FAYMGE+LTKRIRE +LSK+LTFEV WFD+DENSSG+ICSRLAKDANVVRSLVG
Sbjct: 720 IIQQYSFAYMGEYLTKRIRENILSKLLTFEVSWFDEDENSSGSICSRLAKDANVVRSLVG 779
Query: 798 DRTALLVQTISAVTIAFTMGLFIAWRLALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQ 857
+R +LLVQTISAV++A T+GL I+W+L++VMIA+QP+V+ CFY +R++LKS+S KAIKAQ
Sbjct: 780 ERVSLLVQTISAVSVACTLGLAISWKLSIVMIAIQPVVVGCFYTQRIVLKSISKKAIKAQ 839
Query: 858 AESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSWYAGIGLAFSQSLAS 917
ESSKLAAEAVSN+RTITAFSSQ RILK+L+ Q+GP+RE+IRQSW AGI LA S+SL +
Sbjct: 840 DESSKLAAEAVSNIRTITAFSSQERILKLLKMVQEGPQRENIRQSWLAGIVLATSRSLMT 899
Query: 918 CTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFA 977
CT AL++WYG RLI DG I+SKA FE F++ VSTGRVIADAG+MT D+AKGSDAVGSVFA
Sbjct: 900 CTSALNYWYGARLIIDGKITSKAFFELFILFVSTGRVIADAGAMTMDLAKGSDAVGSVFA 959
Query: 978 VMDRYTKIEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVG 1037
V+DRYT IEPE P+G P+ I G I+ NV FAYP RPDV+IF+ FSI I+ GKSTA+VG
Sbjct: 960 VLDRYTNIEPEKPDGFVPQNIKGQIKFVNVDFAYPTRPDVIIFKNFSIDIDEGKSTAIVG 1019
Query: 1038 QSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIREN 1097
SGSGKSTIIGLIERFYDPLKG VKID RDIRSYHLRSLR+HI LVSQEP LFAGTIREN
Sbjct: 1020 PSGSGKSTIIGLIERFYDPLKGIVKIDGRDIRSYHLRSLRQHIGLVSQEPILFAGTIREN 1079
Query: 1098 IAYG-ASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133
I YG ASD+IDESEI+EAAKAANAHDFI L++GYDT
Sbjct: 1080 IMYGGASDKIDESEIIEAAKAANAHDFIVTLSDGYDT 1116
|
|
| TAIR|locus:2088912 ABCB16 "ATP-binding cassette B16" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3613 (1276.9 bits), Expect = 0., P = 0.
Identities = 716/1116 (64%), Positives = 862/1116 (77%)
Query: 19 GSFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHN 78
GS RSIFMHADGVD LM LG IGA+GDGF TP++ F+T+ +N+ G S + F
Sbjct: 5 GSMRSIFMHADGVDWMLMGLGLIGAVGDGFITPILFFITAMLLNDFGSFS-FNDETFMQP 63
Query: 79 INKNTVHLLYLALGSWVACFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTST 138
I+KN + +LY+A SWV CFLEGYCWTRTGERQA +MR RYL+AVLRQDVGYFDLHVTST
Sbjct: 64 ISKNALAMLYVACASWVICFLEGYCWTRTGERQAAKMRERYLRAVLRQDVGYFDLHVTST 123
Query: 139 AEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLWRLAIVGFPFVVLLVIP 198
+++ITSVS+DSLVIQD +SEKLPN +MNAS F G Y+V F++LWRL IVGFPF++LL+IP
Sbjct: 124 SDIITSVSSDSLVIQDFLSEKLPNILMNASAFVGSYIVGFMLLWRLTIVGFPFIILLLIP 183
Query: 199 GLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVXXX 258
GLMYGR L+ ++RK+R+EYN+AG+IAEQAISS+RTVYAFV E K I +FS ALQGSV
Sbjct: 184 GLMYGRALIGISRKIREEYNEAGSIAEQAISSVRTVYAFVSEKKMIEKFSDALQGSVKLG 243
Query: 259 XXXXXXXXXXXXSNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFXXXXXXXXXXXXXXXXX 318
SNG+ + IW FL +YGSRMVM +G +GGTV
Sbjct: 244 LRQGLAKGIAIGSNGIVYAIWGFLTWYGSRMVMNYGYKGGTVSTVTVCVTFGGTALGQAL 303
Query: 319 PNLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESII 378
NLKYFSEA AGERI +MIKRVP IDSD++ G ILE + GEVEF V+ YPSRPE++I
Sbjct: 304 SNLKYFSEAFVAGERIQKMIKRVPDIDSDNLNGHILETIRGEVEFNNVKCKYPSRPETLI 363
Query: 379 FKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438
F D CL IP+GKTVALVGGSGSGKSTVI+LLQRFY P G+I++D VSI+ +Q+KWLRSQ
Sbjct: 364 FDDLCLKIPSGKTVALVGGSGSGKSTVISLLQRFYDPNEGDILIDSVSINNMQVKWLRSQ 423
Query: 439 MGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGV 498
MG+VSQEP+LFATSIKENILFGKEDAS +EV+EAAKASNAHNFI Q P Y TQVGERGV
Sbjct: 424 MGMVSQEPSLFATSIKENILFGKEDASFDEVVEAAKASNAHNFISQFPHGYQTQVGERGV 483
Query: 499 QMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRL 558
MSGG P ILLLDEATSALD ESERVVQEALD A VGRTTI+IAHRL
Sbjct: 484 HMSGGQKQRIAIARALIKSPIILLLDEATSALDLESERVVQEALDNASVGRTTIVIAHRL 543
Query: 559 STIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQTTTPDDNNNATMHSLASKS 618
STIRNAD+I V+ +G ++ETGSHD+L++ + G YTSLVRLQ +++ + T S+ K
Sbjct: 544 STIRNADIICVLHNGCIVETGSHDKLMEID-GKYTSLVRLQQMKNEESCDNT--SVGVKE 600
Query: 619 SNMDMXXXXXXXXXXXXXXXXXXXFAQGRGASQSNEEDIKKLPVPSFRRLVALNAPEWKQ 678
+ S S +D K L VPSF+RL+A+N PEWK
Sbjct: 601 GRVSSLRNDLDYNPRDLAHSMSSSIVTN--LSDSIPQDKKPL-VPSFKRLMAMNRPEWKH 657
Query: 679 ATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINI 738
A GC+ A+L GAVQPIYA++ G MISV+FLT+H++IK+ T IY F GLA+FT +I
Sbjct: 658 ALCGCLSASLGGAVQPIYAYSSGLMISVFFLTNHEQIKENTRIYVLLFFGLALFTFFTSI 717
Query: 739 IQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGD 798
Q Y+F+YMGE+LTKRIRE+MLSKILTFEV WFD++ENSSGAICSRLAKDANVVRSLVG+
Sbjct: 718 SQQYSFSYMGEYLTKRIREQMLSKILTFEVNWFDEEENSSGAICSRLAKDANVVRSLVGE 777
Query: 799 RTALLVQTISAVTIAFTMGLFIAWRLALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQA 858
R +LLVQTIS V +A T+GL IAWR +VMI+VQP++I+C+Y +RVLLK+MS KAI AQ
Sbjct: 778 RMSLLVQTISTVMVACTIGLVIAWRFTIVMISVQPVIIVCYYIQRVLLKNMSKKAIIAQD 837
Query: 859 ESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSWYAGIGLAFSQSLASC 918
ESSKLAAEAVSN+RTIT FSSQ RI+K+LE+ Q+GPRRES RQSW AGI L +QSL +C
Sbjct: 838 ESSKLAAEAVSNIRTITTFSSQERIMKLLERVQEGPRRESARQSWLAGIMLGTTQSLITC 897
Query: 919 TWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAV 978
T AL+FWYGG+LIADG + SKA FE F+I +TGR IA+AG+MTTD+AKGS++V SVF V
Sbjct: 898 TSALNFWYGGKLIADGKMVSKAFFELFLIFKTTGRAIAEAGTMTTDLAKGSNSVDSVFTV 957
Query: 979 MDRYTKIEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQ 1038
+DR T IEPE+P+G+ E+I G I NV FAYP RP+++IF FSI+I GKSTA+VG
Sbjct: 958 LDRRTTIEPENPDGYILEKIKGQITFLNVDFAYPTRPNMVIFNNFSIEIHEGKSTAIVGP 1017
Query: 1039 SGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENI 1098
S SGKST+IGLIERFYDPL+G VKID RDIRSYHLRSLR+H++LVSQEPTLFAGTIRENI
Sbjct: 1018 SRSGKSTVIGLIERFYDPLQGIVKIDGRDIRSYHLRSLRQHMSLVSQEPTLFAGTIRENI 1077
Query: 1099 AYG-ASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133
YG AS++IDESEI+EA K ANAH+FI L++GYDT
Sbjct: 1078 MYGRASNKIDESEIIEAGKTANAHEFITSLSDGYDT 1113
|
|
| UNIPROTKB|Q8GU81 mdr17 "Uncharacterized protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 2728 (965.4 bits), Expect = 6.1e-284, P = 6.1e-284
Identities = 537/1125 (47%), Positives = 754/1125 (67%)
Query: 20 SFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIG-------GVSNVPI 72
S R +F AD VD+ LM LG +GAIGDG ST L+L S MN++G G +
Sbjct: 15 SLRGMFKFADRVDVLLMALGTLGAIGDGCSTNLLLIFASDVMNSLGYARAGAHGGAAAAT 74
Query: 73 DV-FTHNINKNTVHLLYLALGSWVACFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYF 131
V F + K+ ++ +YLA F+EGYCW+RT ERQ R+R YL+A+LRQ+VG+F
Sbjct: 75 GVDFMREVEKSCLNFVYLAFAVLAVAFMEGYCWSRTSERQVLRIRYLYLQAILRQEVGFF 134
Query: 132 DLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLWRLAIVGFPF 191
D +T+E+I S+S D+ +IQ+ +SEK+P F+M++++F + WRLA+V FP
Sbjct: 135 DSQEATTSEIINSISKDASLIQEVLSEKVPLFLMHSTVFISGLAFSTYFSWRLALVSFPL 194
Query: 192 VVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSAL 251
V+LL+IPGL+YG+ L+ L+R+ R EY A ++ EQA+ SI+TVY+F E + I +++ L
Sbjct: 195 VLLLIIPGLIYGKYLLYLSRQSRHEYTNANSLVEQALGSIKTVYSFTAEKRIIQRYTAVL 254
Query: 252 QGSVXXXXXXXXXXXXXXXSNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFXXXXXXXXXX 311
++ G++F IW+FL +YGSR+VMYH GG ++
Sbjct: 255 DKTIKLGIRQGIAKGLAVGFTGLSFAIWAFLAWYGSRLVMYHHESGGRIYAAGISFVLGG 314
Query: 312 XXXXXXXPNLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYP 371
P LK+F+EA A RI++ I RVP+I++D +G IL+ V GE++F+ V+F YP
Sbjct: 315 LSLGMALPELKHFTEASVAATRILDRINRVPEINADDPKGLILDQVRGELQFESVRFVYP 374
Query: 372 SRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQ 431
SRP + KDF L IPAG+TVALVG SGSGKST IAL+QRFY G + +DGV+I +LQ
Sbjct: 375 SRPNMTVLKDFNLQIPAGQTVALVGSSGSGKSTAIALVQRFYDATEGTVKVDGVNIKELQ 434
Query: 432 LKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDT 491
LKW+RS+MGLVSQ+ ALF TSIKENILFGK DA+M+E+ AA +NAHNFIR LP++Y+T
Sbjct: 435 LKWIRSKMGLVSQDHALFGTSIKENILFGKPDATMDELYAAAMTANAHNFIRGLPEEYET 494
Query: 492 QVGERGVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESERVVQEALDKAVVGRTT 551
++GERG +SGG P ILLLDEATSALDSESE++VQ ALD+A +GRTT
Sbjct: 495 KIGERGALLSGGQKQRIAIARAVIKNPAILLLDEATSALDSESEKLVQHALDQASMGRTT 554
Query: 552 IIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQTTTPDDNNNATM 611
+++AH+LST++NAD IAVV G + E G+HDELI + G Y+ LV+LQ +
Sbjct: 555 LVVAHKLSTVKNADQIAVVDGGTIAEIGTHDELIN-KGGPYSRLVKLQKM---------V 604
Query: 612 HSLASKSSNMDMXXXXXXXXXXXXXXXXXXXFAQGRGASQSNEEDIKKLPVPSFRRLVAL 671
+ + + G S+ + + P PSF RL+A+
Sbjct: 605 SYIDQEGGDQFRASSVARTSTSRLSMSRASPMPLTPGISKETDSSVSP-PAPSFSRLLAM 663
Query: 672 NAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAV 731
NAPEW+QA +G + A ++G++QPIYA +G MI+ +F+ D E+ S YA F L+V
Sbjct: 664 NAPEWRQAVIGSLSALVYGSLQPIYAITIGGMIAAFFVQDLKEMNAIISRYALIFCSLSV 723
Query: 732 FTLVINIIQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANV 791
++V+N++QHYNFAYMGEHL +RIR ++L KILTFE WFD++ NSSG++CSRL+ +A++
Sbjct: 724 ISIVVNLLQHYNFAYMGEHLVRRIRVQVLEKILTFEAAWFDEETNSSGSLCSRLSNEASL 783
Query: 792 VRSLVGDRTALLVQTISAVTIAFTMGLFIAWRLALVMIAVQPLVIICFYARRVLLKSMSN 851
V++LV DR +LL+QT S + IA TMGL +AW+LALVMIAVQP +IC+YA++++L ++S
Sbjct: 784 VKTLVADRISLLLQTASGIIIAVTMGLIVAWKLALVMIAVQPTTMICYYAKKIVLSNVSR 843
Query: 852 KAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSWYAGIGLAF 911
KAQ +S+++A EAV N R +T+F ++L++ E Q+ P + + ++SW AGI
Sbjct: 844 DLAKAQHQSTQIAIEAVYNHRMVTSFGCSSKVLQLFEHTQEEPLKRARKKSWVAGITTGL 903
Query: 912 SQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDA 971
S L+ +WALDFWYGG+L G IS+ +F+TF +LVSTG++IADAGSMT+D+AKG++A
Sbjct: 904 SPCLSFLSWALDFWYGGKLAQSGEISAGDVFKTFFVLVSTGKLIADAGSMTSDLAKGANA 963
Query: 972 VGSVFAVMDRYTKIEPEDPE---GHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIE 1028
V SVF V+DR + I P++ + +Q +I G IE + V FAYP RP +I + FS+ ++
Sbjct: 964 VASVFEVLDRKS-ISPQNSQVEKDNQKNKIQGRIEFKRVDFAYPTRPQCLILQDFSLDVK 1022
Query: 1029 AGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPT 1088
AG S LVG+SG GKSTIIGLI+RFYD +G VK+D D+R + R ALVSQEP
Sbjct: 1023 AGTSIGLVGRSGCGKSTIIGLIQRFYDVDRGAVKVDGMDVREMDILWYRGFTALVSQEPA 1082
Query: 1089 LFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133
+F+G++R+NIA+G E DE EIVEAAKAANAH+FI+ L +GY T
Sbjct: 1083 IFSGSVRDNIAFG-KPEADEDEIVEAAKAANAHEFISSLKDGYHT 1126
|
|
| TAIR|locus:2090734 ABCB19 "ATP-binding cassette B19" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2404 (851.3 bits), Expect = 1.3e-249, P = 1.3e-249
Identities = 493/1138 (43%), Positives = 718/1138 (63%)
Query: 5 KKARGSSEVTKTKNGSFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNI 64
K +E K ++ F +F AD D LM +G +GAI G S P+ L + +N
Sbjct: 10 KTVPAEAEKKKEQSLPFFKLFSFADKFDYLLMFVGSLGAIVHGSSMPVFFLLFGQMVNGF 69
Query: 65 GGVSNVPIDVFTHNINKNTVHLLYLALGSWVACFLEGYCWTRTGERQATRMRARYLKAVL 124
G + + + H +++ +++ +YL L + + E CW +GERQ +R +YL+AVL
Sbjct: 70 GK-NQMDLHQMVHEVSRYSLYFVYLGLVVCFSSYAEIACWMYSGERQVAALRKKYLEAVL 128
Query: 125 RQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLWRL 184
+QDVG+FD T +++ SVS D+L++QDAISEK+ NF+ S F +V F+ W+L
Sbjct: 129 KQDVGFFDTDAR-TGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWKL 187
Query: 185 AIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTI 244
A++ + + G +Y TL + K R+ Y AG IAEQAI+ +RTVY++VGESK +
Sbjct: 188 ALLSVAVIPGIAFAGGLYAYTLTGITSKSRESYANAGVIAEQAIAQVRTVYSYVGESKAL 247
Query: 245 NEFSSALQGSVXXXXXXXXXXXXXXXSNGVTFGI----WSFLCYYGSRMVMYHGAQGGTV 300
N +S A+Q ++ G T+GI W+ + +Y + GG
Sbjct: 248 NAYSDAIQYTLKLGYKAGMAKGLGL---GCTYGIACMSWALVFWYAGVFIRNGQTDGGKA 304
Query: 301 FXXXXXXXXXXXXXXXXXPNLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEILENVLGE 360
F NL FS+ AAG ++ME+I + P I D ++G+ L+ V G
Sbjct: 305 FTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIINQRPTIIQDPLDGKCLDQVHGN 364
Query: 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI 420
+EFK V F+YPSRP+ +IF++F + P+GKTVA+VGGSGSGKSTV++L++RFY P G+I
Sbjct: 365 IEFKDVTFSYPSRPDVMIFRNFNIFFPSGKTVAVVGGSGSGKSTVVSLIERFYDPNSGQI 424
Query: 421 ILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHN 480
+LDGV I LQLK+LR Q+GLV+QEPALFAT+I ENIL+GK DA+M EV AA A+NAH+
Sbjct: 425 LLDGVEIKTLQLKFLREQIGLVNQEPALFATTILENILYGKPDATMVEVEAAASAANAHS 484
Query: 481 FIRQLPQQYDTQVGERGVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESERVVQE 540
FI LP+ YDTQVGERGVQ+SGG P+ILLLDEATSALD+ SE +VQE
Sbjct: 485 FITLLPKGYDTQVGERGVQLSGGQKQRIAIARAMLKDPKILLLDEATSALDASSESIVQE 544
Query: 541 ALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQT 600
ALD+ +VGRTT+++AHRL TIRN D IAV+Q GQV+ETG+H+ELI A+SG Y SL+R Q
Sbjct: 545 ALDRVMVGRTTVVVAHRLCTIRNVDSIAVIQQGQVVETGTHEELI-AKSGAYASLIRFQE 603
Query: 601 T--TPDDNNNATMHSLASK-SSNMDMXXXXXXXXXXXXXXXXXXXFAQGRGASQSNEEDI 657
T D +N +T + +++ S ++ A GR SN E
Sbjct: 604 MVGTRDFSNPSTRRTRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMISNAETD 663
Query: 658 KKLPVPS--FRRLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEI 715
+K P F RL+ LN+PEW + +G VG+ L G + P +A M +MI V++ TD+D +
Sbjct: 664 RKTRAPENYFYRLLKLNSPEWPYSIMGAVGSILSGFIGPTFAIVMSNMIEVFYYTDYDSM 723
Query: 716 KKKTSIYAFCFLGLAVFTLVINIIQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDE 775
++KT Y F ++G ++ + +IQHY F+ MGE+LT R+R MLS IL EVGWFD+DE
Sbjct: 724 ERKTKEYVFIYIGAGLYAVGAYLIQHYFFSIMGENLTTRVRRMMLSAILRNEVGWFDEDE 783
Query: 776 NSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWRLALVMIAVQPLV 835
++S I +RLA DA V+S + +R ++++Q ++++ +F + + WR++L+++ PL+
Sbjct: 784 HNSSLIAARLATDAADVKSAIAERISVILQNMTSLLTSFIVAFIVEWRVSLLILGTFPLL 843
Query: 836 IICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPR 895
++ +A+++ LK + KA A++S +A E VSN+RT+ AF++Q +IL + + P+
Sbjct: 844 VLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQSKILSLFCHELRVPQ 903
Query: 896 RESIRQSWYAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVI 955
+ S+ +S +G SQ + AL WYG L++ G + + + F++LV T +
Sbjct: 904 KRSLYRSQTSGFLFGLSQLALYGSEALILWYGAHLVSKGVSTFSKVIKVFVVLVITANSV 963
Query: 956 ADAGSMTTDIAKGSDAVGSVFAVMDRYTKIEPEDPEGHQPERITGNIELQNVHFAYPARP 1015
A+ S+ +I +G +AVGSVF+V+DR T+I+P+D + E I G+IE ++V FAYP+RP
Sbjct: 964 AETVSLAPEIIRGGEAVGSVFSVLDRQTRIDPDDADADPVETIRGDIEFRHVDFAYPSRP 1023
Query: 1016 DVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRS 1075
DVM+F F+++I AG S ALVG SGSGKS++I +IERFYDPL G V ID +DIR +L+S
Sbjct: 1024 DVMVFRDFNLRIRAGHSQALVGASGSGKSSVIAMIERFYDPLAGKVMIDGKDIRRLNLKS 1083
Query: 1076 LRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133
LR I LV QEP LFA TI +NIAYG D ESE+++AA+AANAH FI+GL EGY T
Sbjct: 1084 LRLKIGLVQQEPALFAATIFDNIAYG-KDGATESEVIDAARAANAHGFISGLPEGYKT 1140
|
|
| UNIPROTKB|Q0JCP1 Os04g0459000 "Os04g0459000 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 2365 (837.6 bits), Expect = 1.8e-245, P = 1.8e-245
Identities = 484/1138 (42%), Positives = 705/1138 (61%)
Query: 9 GSSEVTKTK---NGSFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIG 65
G E K + + +F +F AD +D LM G GA+ G + P+ L + +N G
Sbjct: 16 GGCEAVKKRVDQSVAFHELFGFADPLDWLLMAAGSAGAVVHGAAMPVFFLLFGELINGFG 75
Query: 66 GVSNVPIDVFTHNINKNTVHLLYLALGSWVACFLEGYCWTRTGERQATRMRARYLKAVLR 125
+ + T ++K +++ +YL L + +LE CW TGERQ +R RYL+AVLR
Sbjct: 76 KNQH-SLRRMTDEVSKYSLYFVYLGLVVCASSYLEIACWMYTGERQVGALRRRYLEAVLR 134
Query: 126 QDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLWRLA 185
QDVG+FD T +V+ SVS D+L++QDAI EK+ NF+ S F +V F+ WRLA
Sbjct: 135 QDVGFFDTDAR-TGDVVFSVSTDTLLVQDAIGEKVGNFIHYLSTFLAGLVVGFVSAWRLA 193
Query: 186 IVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTIN 245
++ + + G +Y TL L K RD Y AG IAEQAI+ +RTVY++VGESK +N
Sbjct: 194 LLSIAVIPGIAFAGGLYAYTLTGLTSKSRDSYANAGIIAEQAIAQVRTVYSYVGESKALN 253
Query: 246 EFSSALQGSVXXXXXXXXXXXXXXXSNGVTFGI----WSFLCYYGSRMVMYHGAQGGTVF 301
+S A+Q ++ G T+GI W+ + +Y + GG F
Sbjct: 254 SYSEAIQNTLKLGYKAGMAKGLGI---GCTYGIACMSWALVFWYAGVFIRNGQTDGGKAF 310
Query: 302 XXXXXXXXXXXXXXXXXPNLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEILENVLGEV 361
NL FS+ AG +++E+I++ P I D +G L+ V G +
Sbjct: 311 TAIFSAIVGGLSLGQSFSNLGAFSKGKIAGYKLLEVIRQRPTIVQDPADGRCLDEVHGNI 370
Query: 362 EFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEII 421
EFK V F+YPSRP+ +IF+DF L PAGKT A+VGGSGSGKSTV+AL++RFY P G+++
Sbjct: 371 EFKEVAFSYPSRPDVMIFRDFSLFFPAGKTAAVVGGSGSGKSTVVALIERFYDPNQGQVL 430
Query: 422 LDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNF 481
LD V I LQLKWLR Q+GLV+QEPALFAT+I ENIL+GK DA+M EV AA ++NAH+F
Sbjct: 431 LDNVDIKTLQLKWLRDQIGLVNQEPALFATTILENILYGKPDATMAEVEAAATSANAHSF 490
Query: 482 IRQLPQQYDTQVGERGVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESERVVQEA 541
I LP Y+TQVGERG+Q+SGG P+ILLLDEATSALD+ SE +VQEA
Sbjct: 491 IALLPNGYNTQVGERGLQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSENIVQEA 550
Query: 542 LDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELI-QAESGLYTSLVRLQ- 599
LD+ +VGRTT+++AHRLSTIR D+IAV+Q GQV+ETG+HDEL+ + SG Y +L+R Q
Sbjct: 551 LDRLMVGRTTVVVAHRLSTIRCVDMIAVIQQGQVVETGTHDELLAKGSSGAYAALIRFQE 610
Query: 600 -TTTPDDNNNATMHSLASKSSN-MDMXXXXXXXXXXXXXXXXXXXFAQGRGASQSNEEDI 657
D +T S +S+ SN + A GR SN ++
Sbjct: 611 MARNRDFRGPSTRKSRSSRLSNSLSTRSLSLRSGSLRNLSYSYSTGADGRIEMVSNADND 670
Query: 658 KKLPVPS--FRRLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEI 715
+K P P F +L+ LNAPEW LG +G+ L G + P +A M +MI V++ D + +
Sbjct: 671 RKYPAPKGYFFKLLKLNAPEWPYTILGAIGSILSGFIGPTFAIVMSNMIEVFYFRDPNAM 730
Query: 716 KKKTSIYAFCFLGLAVFTLVINIIQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDE 775
++KT Y F ++G ++ +V ++QHY F+ MGE+LT R+R ML+ IL +VGWFDQ+E
Sbjct: 731 ERKTREYVFIYIGTGLYAVVAYLVQHYFFSIMGENLTTRVRRMMLAAILRNDVGWFDQEE 790
Query: 776 NSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWRLALVMIAVQPLV 835
N+S + +RL+ DA V+S + +R ++++Q ++++ ++F +G I WR+A++++ PL+
Sbjct: 791 NNSSLVAARLSTDAADVKSAIAERISVILQNMTSLLVSFVVGFIIEWRVAVLILVTFPLL 850
Query: 836 IICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPR 895
++ +A+++ +K + KA A++S +A E VSN+RT+ AF++Q ++L + + P+
Sbjct: 851 VLANFAQQLSMKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQDKVLSLFCTELRVPQ 910
Query: 896 RESIRQSWYAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVI 955
S+R+S +G SQ + AL WYG L+ + + + F++LV T +
Sbjct: 911 MHSLRRSQISGALFGLSQLSLYASEALILWYGAHLVRHHVSTFSKVIKVFVVLVITANTV 970
Query: 956 ADAGSMTTDIAKGSDAVGSVFAVMDRYTKIEPEDPEGHQPERITGNIELQNVHFAYPARP 1015
A+ S+ +I +G +++ SVFA+++ T+I+P++PE E + G+I+ ++V FAYP+RP
Sbjct: 971 AETVSLAPEIVRGGESIRSVFAILNYRTRIDPDEPETEPVESVRGDIDFRHVDFAYPSRP 1030
Query: 1016 DVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRS 1075
DVM+F+ FS++I AG+S ALVG SGSGKST+I LIERFYDPL G V ID +DIR ++RS
Sbjct: 1031 DVMVFKDFSLRIRAGQSQALVGASGSGKSTVIALIERFYDPLAGKVMIDGKDIRRLNVRS 1090
Query: 1076 LRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133
LR I LV QEP LFA +I ENIAYG D E E++EAAK AN H F++ L EGY T
Sbjct: 1091 LRLKIGLVQQEPVLFATSIFENIAYG-KDGATEEEVIEAAKVANMHGFVSALPEGYKT 1147
|
|
| TAIR|locus:2057961 ABCB1 "ATP-binding cassette B1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2232 (790.8 bits), Expect = 2.2e-231, P = 2.2e-231
Identities = 462/1130 (40%), Positives = 685/1130 (60%)
Query: 20 SFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNI 79
+F+ +F ADG+D LM +G +GA G S PL L + +N+ G SN ++ +
Sbjct: 28 AFKELFRFADGLDYVLMGIGSVGAFVHGCSLPLFLRFFADLVNSFGSNSN-NVEKMMEEV 86
Query: 80 NKNTVHLLYLALGSWVACFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTA 139
K ++ L + W + + E CW +GERQ T+MR +YL+A L QD+ +FD V T+
Sbjct: 87 LKYALYFLVVGAAIWASSWAEISCWMWSGERQTTKMRIKYLEAALNQDIQFFDTEVR-TS 145
Query: 140 EVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLWRLAIVGFPFVVLLVIPG 199
+V+ +++ D++++QDAISEKL NF+ + F ++V F +W+LA+V V L+ + G
Sbjct: 146 DVVFAINTDAVMVQDAISEKLGNFIHYMATFVSGFIVGFTAVWQLALVTLAVVPLIAVIG 205
Query: 200 LMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQ-GSVXXX 258
++ TL L+ K ++ ++AG I EQ + IR V AFVGES+ +SSAL+
Sbjct: 206 GIHTTTLSKLSNKSQESLSQAGNIVEQTVVQIRVVMAFVGESRASQAYSSALKIAQKLGY 265
Query: 259 XXXXXXXXXXXXSNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFXXXXXXXXXXXXXXXXX 318
+ V F ++ L +YG +V +H GG
Sbjct: 266 KTGLAKGMGLGATYFVVFCCYALLLWYGGYLVRHHLTNGGLAIATMFAVMIGGLALGQSA 325
Query: 319 PNLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESII 378
P++ F++A A +I +I P I+ +S G L++V G VE K V F+YPSRP+ I
Sbjct: 326 PSMAAFAKAKVAAAKIFRIIDHKPTIERNSESGVELDSVTGLVELKNVDFSYPSRPDVKI 385
Query: 379 FKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438
+FCL++PAGKT+ALVG SGSGKSTV++L++RFY P G+++LDG + L+L+WLR Q
Sbjct: 386 LNNFCLSVPAGKTIALVGSSGSGKSTVVSLIERFYDPNSGQVLLDGQDLKTLKLRWLRQQ 445
Query: 439 MGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGV 498
+GLVSQEPALFATSIKENIL G+ DA E+ EAA+ +NAH+FI +LP +DTQVGERG+
Sbjct: 446 IGLVSQEPALFATSIKENILLGRPDADQVEIEEAARVANAHSFIIKLPDGFDTQVGERGL 505
Query: 499 QMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRL 558
Q+SGG P ILLLDEATSALDSESE++VQEALD+ ++GRTT+IIAHRL
Sbjct: 506 QLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLIIAHRL 565
Query: 559 STIRNADVIAVVQDGQVMETGSHDELI-QAESGLYTSLVRLQTTTPDDN-NNATMHSLAS 616
STIR AD++AV+Q G V E G+HDEL + E+G+Y L+++Q + +NA S
Sbjct: 566 STIRKADLVAVLQQGSVSEIGTHDELFSKGENGVYAKLIKMQEAAHETAMSNARKSSARP 625
Query: 617 KSSNMDMXXXXXXXXXXXXXX--------XXXXXFAQGRGASQ----SNEEDIKKLPVPS 664
S+ + F+ AS NE+ K S
Sbjct: 626 SSARNSVSSPIMTRNSSYGRSPYSRRLSDFSTSDFSLSIDASSYPNYRNEKLAFKDQANS 685
Query: 665 FRRLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAF 724
F RL +N+PEWK A LG VG+ + G++ +A+ + +++SVY+ DH+ + K+ Y +
Sbjct: 686 FWRLAKMNSPEWKYALLGSVGSVICGSLSAFFAYVLSAVLSVYYNPDHEYMIKQIDKYCY 745
Query: 725 CFLGLAVFTLVINIIQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSR 784
+GL+ LV N +QH + +GE+LTKR+RE+MLS +L E+ WFDQ+EN S I +R
Sbjct: 746 LLIGLSSAALVFNTLQHSFWDIVGENLTKRVREKMLSAVLKNEMAWFDQEENESARIAAR 805
Query: 785 LAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWRLALVMIAVQPLVIICFYARRV 844
LA DAN VRS +GDR +++VQ + + +A T G + WRLALV++AV P+V+ +++
Sbjct: 806 LALDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLVAVFPVVVAATVLQKM 865
Query: 845 LLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSWY 904
+ S A A+ ++LA EA++N+RT+ AF+S+ +I+++ + P + +
Sbjct: 866 FMTGFSGDLEAAHAKGTQLAGEAIANVRTVAAFNSEAKIVRLYTANLEPPLKRCFWKGQI 925
Query: 905 AGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTD 964
AG G +Q ++AL WY L+ G FM+L+ + A+ ++ D
Sbjct: 926 AGSGYGVAQFCLYASYALGLWYASWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPD 985
Query: 965 IAKGSDAVGSVFAVMDRYTKIEPEDPEGHQ-PERITGNIELQNVHFAYPARPDVMIFEGF 1023
KG A+ SVF ++DR T+IEP+DP+ P+R+ G +EL+++ F+YP+RPD+ IF
Sbjct: 986 FIKGGQAMRSVFELLDRKTEIEPDDPDTTPVPDRLRGEVELKHIDFSYPSRPDIQIFRDL 1045
Query: 1024 SIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALV 1083
S++ AGK+ ALVG SG GKS++I LI+RFY+P G V ID +DIR Y+L+++R+HIA+V
Sbjct: 1046 SLRARAGKTLALVGPSGCGKSSVISLIQRFYEPSSGRVMIDGKDIRKYNLKAIRKHIAIV 1105
Query: 1084 SQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133
QEP LF TI ENIAYG + E+EI++AA A+AH FI+ L EGY T
Sbjct: 1106 PQEPCLFGTTIYENIAYG-HECATEAEIIQAATLASAHKFISALPEGYKT 1154
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| P36619 | PMD1_SCHPO | No assigned EC number | 0.3190 | 0.9770 | 0.8127 | yes | no |
| P21449 | MDR2_CRIGR | 3, ., 6, ., 3, ., 4, 4 | 0.3500 | 0.9708 | 0.8620 | yes | no |
| P08183 | MDR1_HUMAN | 3, ., 6, ., 3, ., 4, 4 | 0.3628 | 0.9708 | 0.8593 | yes | no |
| Q6YUU5 | MDR_ORYSJ | No assigned EC number | 0.6912 | 0.9788 | 0.8907 | yes | no |
| Q9LHD1 | AB15B_ARATH | No assigned EC number | 0.7607 | 0.9788 | 0.8943 | yes | no |
| P06795 | MDR1B_MOUSE | 3, ., 6, ., 3, ., 4, 4 | 0.3480 | 0.9761 | 0.8667 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| gw1.XVII.765.1 | multidrug/pheromone exporter, MDR family, ABC transporter family (1242 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1133 | |||
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-144 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 1e-126 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-125 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-125 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 1e-110 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-109 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 1e-106 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 1e-99 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 3e-97 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 5e-97 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 5e-87 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 9e-86 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 3e-84 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 1e-82 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 4e-82 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 3e-79 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 4e-78 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 9e-76 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 3e-75 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 1e-71 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 1e-70 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 4e-68 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 6e-67 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 5e-66 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 2e-65 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 6e-65 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 2e-64 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 1e-61 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 4e-61 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 1e-59 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 2e-59 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 2e-58 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 1e-56 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 2e-56 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 3e-56 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 6e-55 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 8e-54 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 2e-50 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 7e-50 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 1e-49 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 2e-49 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 2e-47 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 6e-47 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 1e-46 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 2e-46 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 8e-46 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 2e-44 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 3e-44 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 2e-43 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 5e-42 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 1e-41 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 1e-40 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 2e-40 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 3e-40 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 5e-40 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 7e-39 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 1e-38 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-38 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 4e-38 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 4e-38 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 1e-37 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 2e-37 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 4e-37 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 1e-36 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 1e-36 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 2e-36 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 3e-36 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 7e-36 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 4e-35 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 4e-35 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 4e-35 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 7e-35 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 8e-35 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 2e-34 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 2e-34 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 2e-34 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 4e-34 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 8e-34 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 2e-33 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 5e-33 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 7e-33 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 1e-32 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-32 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 3e-32 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 3e-32 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 3e-32 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 6e-32 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 7e-32 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 8e-32 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 2e-31 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 3e-31 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 4e-31 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 2e-30 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 2e-30 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 2e-30 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 4e-30 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 5e-30 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 7e-30 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 1e-29 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 1e-29 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-29 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 2e-29 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 2e-29 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 3e-29 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 5e-29 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 5e-29 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 8e-29 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 2e-28 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-28 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 2e-28 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 3e-28 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 4e-28 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 6e-28 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 6e-28 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 6e-28 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 7e-28 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 1e-27 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 1e-27 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 2e-27 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 2e-27 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 3e-27 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 5e-27 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 1e-26 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-26 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 1e-26 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 3e-26 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 3e-26 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 6e-26 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 6e-26 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 6e-26 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 6e-26 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 7e-26 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 8e-26 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 1e-25 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 1e-25 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 1e-25 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 2e-25 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 2e-25 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 2e-25 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 2e-25 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 3e-25 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 4e-25 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 6e-25 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 7e-25 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 7e-25 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 8e-25 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 9e-25 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 1e-24 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 1e-24 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 1e-24 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 1e-24 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 1e-24 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 2e-24 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 2e-24 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 2e-24 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 4e-24 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 5e-24 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 5e-24 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 7e-24 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 7e-24 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 7e-24 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 8e-24 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 9e-24 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 1e-23 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 2e-23 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 2e-23 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 3e-23 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 3e-23 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 4e-23 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 4e-23 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 4e-23 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 5e-23 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 6e-23 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 7e-23 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 7e-23 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 9e-23 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 9e-23 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 1e-22 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 1e-22 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 1e-22 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 2e-22 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 2e-22 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 2e-22 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 4e-22 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 4e-22 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 5e-22 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 6e-22 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 6e-22 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 6e-22 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 6e-22 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 7e-22 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 9e-22 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-21 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 2e-21 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 2e-21 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 2e-21 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 2e-21 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 2e-21 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 3e-21 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 3e-21 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 3e-21 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 3e-21 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 3e-21 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 4e-21 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 5e-21 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 5e-21 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 6e-21 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 6e-21 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 7e-21 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 7e-21 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 9e-21 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 1e-20 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 1e-20 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 1e-20 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 1e-20 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 1e-20 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 1e-20 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 1e-20 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 2e-20 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 2e-20 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 2e-20 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 2e-20 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 4e-20 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 4e-20 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 5e-20 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 6e-20 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 1e-19 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 1e-19 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 1e-19 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 1e-19 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 1e-19 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-19 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 2e-19 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 2e-19 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 2e-19 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 2e-19 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 2e-19 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 3e-19 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 3e-19 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 3e-19 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 3e-19 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 4e-19 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 4e-19 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 4e-19 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 4e-19 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 5e-19 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 7e-19 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 1e-18 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 1e-18 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 1e-18 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 1e-18 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 2e-18 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 2e-18 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 2e-18 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 2e-18 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 2e-18 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 3e-18 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 3e-18 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 4e-18 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 4e-18 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 4e-18 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 4e-18 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 4e-18 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 4e-18 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 5e-18 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 5e-18 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 8e-18 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 9e-18 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 9e-18 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 1e-17 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 1e-17 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 1e-17 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 2e-17 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 2e-17 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 2e-17 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 3e-17 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 3e-17 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 4e-17 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 4e-17 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 4e-17 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 4e-17 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 4e-17 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 4e-17 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 5e-17 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 5e-17 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 6e-17 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 8e-17 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 8e-17 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 1e-16 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 1e-16 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 1e-16 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 1e-16 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 1e-16 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 1e-16 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 2e-16 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 2e-16 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 2e-16 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 2e-16 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 2e-16 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 4e-16 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 4e-16 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 4e-16 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 5e-16 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 5e-16 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 7e-16 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 9e-16 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 1e-15 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 1e-15 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 1e-15 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 1e-15 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-15 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 2e-15 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 2e-15 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 2e-15 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 2e-15 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 2e-15 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 3e-15 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 3e-15 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 3e-15 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 4e-15 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 4e-15 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 4e-15 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 5e-15 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 5e-15 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 1e-14 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 1e-14 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 2e-14 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 2e-14 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 2e-14 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 2e-14 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 2e-14 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 2e-14 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 3e-14 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 3e-14 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 3e-14 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 3e-14 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 4e-14 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 5e-14 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 5e-14 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 5e-14 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 7e-14 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 7e-14 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 8e-14 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 9e-14 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 9e-14 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 1e-13 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 2e-13 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 2e-13 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 2e-13 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 3e-13 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 3e-13 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 3e-13 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 4e-13 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 4e-13 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 5e-13 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 6e-13 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 7e-13 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 7e-13 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 7e-13 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 9e-13 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 9e-13 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 1e-12 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 1e-12 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 1e-12 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 1e-12 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 2e-12 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 2e-12 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 2e-12 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 2e-12 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 3e-12 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 4e-12 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 5e-12 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 5e-12 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 5e-12 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 6e-12 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 7e-12 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 7e-12 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 9e-12 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 1e-11 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 1e-11 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 1e-11 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 2e-11 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 2e-11 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-11 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 2e-11 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 2e-11 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 2e-11 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 3e-11 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 3e-11 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 3e-11 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 3e-11 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 4e-11 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 4e-11 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 4e-11 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 5e-11 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 5e-11 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 6e-11 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 6e-11 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 6e-11 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 7e-11 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 7e-11 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 7e-11 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 9e-11 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 1e-10 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 1e-10 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 1e-10 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 1e-10 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 1e-10 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 2e-10 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 2e-10 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 2e-10 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 2e-10 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 3e-10 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 3e-10 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 3e-10 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 4e-10 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 4e-10 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 5e-10 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 5e-10 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 5e-10 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 6e-10 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 6e-10 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 6e-10 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 8e-10 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 8e-10 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 1e-09 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 1e-09 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 1e-09 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 1e-09 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 1e-09 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 2e-09 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 2e-09 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 2e-09 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 2e-09 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 3e-09 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 3e-09 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 3e-09 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 3e-09 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 3e-09 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 3e-09 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 4e-09 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 4e-09 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 4e-09 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 4e-09 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 5e-09 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 6e-09 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 6e-09 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 7e-09 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 7e-09 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 7e-09 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-08 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 1e-08 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 1e-08 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 1e-08 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 1e-08 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 2e-08 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 2e-08 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-08 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 2e-08 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 2e-08 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 2e-08 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 2e-08 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 3e-08 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 3e-08 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 3e-08 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 3e-08 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 4e-08 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 4e-08 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 4e-08 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 4e-08 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 5e-08 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 5e-08 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 5e-08 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 6e-08 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 6e-08 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 7e-08 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 7e-08 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 7e-08 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 7e-08 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 7e-08 | |
| cd03271 | 261 | cd03271, ABC_UvrA_II, ATP-binding cassette domain | 7e-08 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 9e-08 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 9e-08 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 9e-08 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 1e-07 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 1e-07 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 1e-07 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 1e-07 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-07 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 1e-07 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 1e-07 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 1e-07 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 2e-07 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 2e-07 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 2e-07 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 2e-07 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 2e-07 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 2e-07 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 2e-07 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 2e-07 | |
| PRK13541 | 195 | PRK13541, PRK13541, cytochrome c biogenesis protei | 2e-07 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 3e-07 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 3e-07 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 3e-07 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 4e-07 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 4e-07 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 5e-07 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 6e-07 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 6e-07 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 7e-07 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 8e-07 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 9e-07 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 9e-07 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 9e-07 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 1e-06 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 1e-06 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 1e-06 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 1e-06 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 1e-06 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 1e-06 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 1e-06 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 2e-06 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 2e-06 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 2e-06 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 2e-06 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 2e-06 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 2e-06 | |
| PRK15093 | 330 | PRK15093, PRK15093, antimicrobial peptide ABC tran | 2e-06 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 3e-06 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 3e-06 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 3e-06 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 3e-06 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 3e-06 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 3e-06 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 3e-06 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 3e-06 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 3e-06 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 3e-06 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 3e-06 | |
| COG4170 | 330 | COG4170, SapD, ABC-type antimicrobial peptide tran | 4e-06 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 4e-06 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 5e-06 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 6e-06 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 7e-06 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 7e-06 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 1e-05 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 1e-05 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 1e-05 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 1e-05 | |
| PRK13546 | 264 | PRK13546, PRK13546, teichoic acids export protein | 1e-05 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 2e-05 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 2e-05 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 2e-05 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 2e-05 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 2e-05 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 2e-05 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 2e-05 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 2e-05 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 2e-05 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 2e-05 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 4e-05 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 6e-05 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 6e-05 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 7e-05 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 7e-05 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 7e-05 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 7e-05 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 7e-05 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 8e-05 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 8e-05 | |
| COG0178 | 935 | COG0178, UvrA, Excinuclease ATPase subunit [DNA re | 8e-05 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 9e-05 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 9e-05 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-04 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 1e-04 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 1e-04 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 1e-04 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 1e-04 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 1e-04 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 1e-04 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 1e-04 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 2e-04 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 2e-04 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 2e-04 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 2e-04 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 3e-04 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 3e-04 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 3e-04 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 3e-04 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 3e-04 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 4e-04 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 4e-04 | |
| TIGR00630 | 925 | TIGR00630, uvra, excinuclease ABC, A subunit | 4e-04 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 5e-04 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 5e-04 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 5e-04 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 5e-04 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 5e-04 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 5e-04 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 6e-04 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 6e-04 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 7e-04 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 7e-04 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 8e-04 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 9e-04 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 0.001 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 0.001 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 0.001 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 0.001 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 0.001 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 0.001 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 0.001 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 0.001 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 0.001 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 0.001 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 0.001 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 0.002 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 0.002 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 0.002 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 0.002 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 0.002 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 0.002 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 0.003 | |
| pfam13558 | 79 | pfam13558, SbcCD_C, Putative exonuclease SbcCD, C | 0.003 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 0.004 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 0.004 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 0.004 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 0.004 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 0.004 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 0.004 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 431 bits (1111), Expect = e-144
Identities = 163/239 (68%), Positives = 196/239 (82%), Gaps = 1/239 (0%)
Query: 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI 420
+EFK V F YPSRP+ I K LTIP GKTVALVG SG GKSTV++LL+RFY P GEI
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 421 ILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHN 480
+LDGV I L L+WLRSQ+GLVSQEP LF +I ENI +GK DA+ EEV EAAK +N H+
Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHD 120
Query: 481 FIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQE 540
FI LP YDT VGERG Q+SGGQKQRIAIARA+++ P+ILLLDEATSALD+ESE++VQE
Sbjct: 121 FIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQE 180
Query: 541 ALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQ 599
ALD+A+ GRTTI+IAHRLSTIRNAD+IAV+Q+GQV+E G+HDEL+ A+ G+Y LV+ Q
Sbjct: 181 ALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELM-AQKGVYAKLVKAQ 238
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 398 bits (1025), Expect = e-126
Identities = 203/527 (38%), Positives = 304/527 (57%), Gaps = 10/527 (1%)
Query: 77 HNINKNTVHLLYLALGSWVACFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVT 136
+N+ LL +AL + Y T GER +R ++ +FD
Sbjct: 55 GLLNRYFAFLLVVALVLALGTAARFYLVTWLGERVVADIRRAVFAHLISLSPSFFD--KN 112
Query: 137 STAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLWRLAIVGFPFVVLLV 196
+ EV++ ++ D+ ++Q I L + NA + G ++ F+ +L + V L++
Sbjct: 113 RSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLAVPLVL 172
Query: 197 IPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQ 256
+P L++GR + L+R+ +D AG+ A + + +IRTV AF E + F A++ + +
Sbjct: 173 LPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYE 232
Query: 257 LGLKQGLAKGLAIGSNGV-TFGIWSFLCYYGSRMVMYHGAQGGTV--FAVGASIAVGGL- 312
++ + L V FG + + G+ V+ GT+ F A + G +
Sbjct: 233 AARQRIRTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIG 292
Query: 313 ALGAGLPNLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPS 372
L L A A ER++E+++ P I + + + + GE+EF+ V FAYP+
Sbjct: 293 TLSEVWGEL---QRAAGAAERLIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPA 349
Query: 373 RPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQL 432
RP+ LT+ G+TVALVG SG+GKST+ LL RFY P G I+LDGV + +L
Sbjct: 350 RPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDP 409
Query: 433 KWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQ 492
LR++M LV Q+P LFA S+ ENI +G+ DA+ EEV AA+A++AH FI LP+ YDT
Sbjct: 410 AELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTY 469
Query: 493 VGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTI 552
+GERGV +SGGQ+QRIAIARAI+K ILLLDEATSALD+ESE++VQ+AL+ + GRTT+
Sbjct: 470 LGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTL 529
Query: 553 IIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQ 599
IIAHRL+T+ AD I V+ G+++ G+H ELI A+ GLY L RLQ
Sbjct: 530 IIAHRLATVLKADRIVVMDQGRIVAQGTHAELI-AKGGLYARLARLQ 575
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 396 bits (1020), Expect = e-125
Identities = 190/568 (33%), Positives = 313/568 (55%), Gaps = 17/568 (2%)
Query: 35 LMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSW 94
L++L + + + L+ L + ++ + + + + LL LAL
Sbjct: 15 LLLLAILLLLLSALLSLLLPLLIGRIIDALLADLG--------ELLELLLLLLLLALLGG 66
Query: 95 VACFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQD 154
V L+ Y +R G++ +R + +LR + +FD + ++I+ ++ND + +
Sbjct: 67 VLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKA--KSGDLISRLTNDVEAVSN 124
Query: 155 AISEKLPNFVMNASLFFGCYLVAFLMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMR 214
+S L + L G ++ F + WRLA++ + LL + + R L+R++R
Sbjct: 125 LVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSRRVR 184
Query: 215 DEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGLKQGLAKGLAIGSNGV 274
+ + +++S IR + AF E + + F A + + L+ + L +
Sbjct: 185 EALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLL 244
Query: 275 TFGI-WSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGER 333
+ + G +V+ G + A + + + A AA ER
Sbjct: 245 LSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAER 304
Query: 334 IMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVA 393
+ E++ P+++ + L++ +G +EF+ V F+YP + + KD +I G+ VA
Sbjct: 305 LFELLDEEPEVED---PPDPLKDTIGSIEFENVSFSYPGKKP--VLKDISFSIEPGEKVA 359
Query: 394 LVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSI 453
+VG SGSGKST+I LL R Y P GEI++DG+ I + L LR ++G+VSQ+P LF+ +I
Sbjct: 360 IVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTI 419
Query: 454 KENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARA 513
+ENI G+ DA+ EE+ EA K +NAH FI LP YDT VGERGV +SGGQ+QR+AIARA
Sbjct: 420 RENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARA 479
Query: 514 IIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDG 573
+++ P IL+LDEATSALD+E+E ++Q+AL K + GRTT+IIAHRLSTI+NAD I V+ +G
Sbjct: 480 LLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNG 539
Query: 574 QVMETGSHDELIQAESGLYTSLVRLQTT 601
+++E G+H+EL+ A+ GLY L + Q
Sbjct: 540 RIVERGTHEELL-AKGGLYARLYQAQGG 566
|
Length = 567 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 399 bits (1026), Expect = e-125
Identities = 191/513 (37%), Positives = 300/513 (58%), Gaps = 16/513 (3%)
Query: 89 LALGSWVACFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSND 148
L++ S V+ L G + T R R+R +++LRQD+G+FD + T E+ + +S+D
Sbjct: 210 LSIASSVSAGLRGGSFNYTMARINLRIREDLFRSLLRQDLGFFDEN--KTGELTSRLSSD 267
Query: 149 SLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLWRLAIVGFPFVVLLVIPGLMYGRTLMS 208
+ + ++S + + N + G + RL +V + L+ + ++G+
Sbjct: 268 TQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVFGKRYQL 327
Query: 209 LARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGLKQGLAKGLA 268
L+ ++++ KA +AE+A+S +RTV +F E + F AL+ ++QL ++ LA
Sbjct: 328 LSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGY 387
Query: 269 IGSNGVT-FGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYF--- 324
+ + V I + YYG ++V+ G + S + LG + L Y
Sbjct: 388 LWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLV----SFLLYQEQLGEAVRVLSYVYSG 443
Query: 325 -SEAMAAGERIMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFC 383
+A+ A E++ E + R P I N+ G +EF+ V F+YP+RP+ + K
Sbjct: 444 MMQAVGASEKVFEYLDRKPNIPLTGTLAP--LNLEGLIEFQDVSFSYPNRPDVPVLKGLT 501
Query: 384 LTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVS 443
T+ G+ VALVG SGSGKSTV ALLQ Y P GG+++LDGV + + +L Q+ LV
Sbjct: 502 FTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVG 561
Query: 444 QEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGG 503
QEP LF+ S++ENI +G D EE++ AAKA+NAH+FI + P YDT+VGE+G Q+SGG
Sbjct: 562 QEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGG 621
Query: 504 QKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN 563
QKQRIAIARA+++ PR+L+LDEATSALD+E E+++QE ++ RT ++IAHRLST+
Sbjct: 622 QKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVER 679
Query: 564 ADVIAVVQDGQVMETGSHDELIQAESGLYTSLV 596
AD I V++ G V+E G+H +L+ + G Y LV
Sbjct: 680 ADQILVLKKGSVVEMGTHKQLM-EDQGCYKHLV 711
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 341 bits (878), Expect = e-110
Identities = 132/235 (56%), Positives = 175/235 (74%), Gaps = 2/235 (0%)
Query: 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI 420
VEFK V F YP ++ +D L IPAG+TVALVG SGSGKST++ L+ RFY G I
Sbjct: 1 VEFKNVTFRYPGDGPPVL-RDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI 59
Query: 421 ILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHN 480
++DG + L LR Q+GLVSQ+ LF ++ ENI +G+ A+ EEV EAA+A+NAH
Sbjct: 60 LIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHE 119
Query: 481 FIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQE 540
FI +LP+ YDT +GERGV++SGGQ+QRIAIARA++K P IL+LDEATSALD+ESER+VQ
Sbjct: 120 FIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQA 179
Query: 541 ALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSL 595
AL++ + RTT +IAHRLSTI NAD I V++DG+++E G+H+EL+ G+Y L
Sbjct: 180 ALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQG-GVYAKL 233
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 372 bits (955), Expect = e-109
Identities = 298/1185 (25%), Positives = 537/1185 (45%), Gaps = 181/1185 (15%)
Query: 35 LMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSW 94
L+ + ++ A G + P + + M N+ N+N L+ + + +
Sbjct: 61 LLGVSFVCATISGGTLPFFVSVFGVIMKNMN---------LGENVNDIIFSLVLIGIFQF 111
Query: 95 VACFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSL-VIQ 153
+ F+ +C + ++ +LK+V QD G F H + +TS + L +
Sbjct: 112 ILSFISSFCMDVVTTKILKTLKLEFLKSVFYQD-GQF--HDNNPGSKLTSDLDFYLEQVN 168
Query: 154 DAISEKLPNFVMNASLFFGCYLVAFLMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKM 213
I K AS F G Y+ + RL + L+ I G++ + + + +K
Sbjct: 169 AGIGTKFITIFTYASAFLGLYIWSLFKNARLTLCITCVFPLIYICGVICNKK-VKINKKT 227
Query: 214 RDEYNK-AGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGLKQGLAKGLAIGS- 271
YN +I E+A+ IRTV ++ GE + +F+ + + + LK + L IG
Sbjct: 228 SLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIGMI 287
Query: 272 NGVTFGIWSFLCYYGSRMVMYHGA--------QGGTVFAVGASIAVGGLALGAGLPNLKY 323
NG ++F +YG+R+++ + GG+V ++ + + L LPN+
Sbjct: 288 NGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITE 347
Query: 324 FSEAMAAGERIMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFC 383
+ +++ A + E+I R P ++++ +G+ L+++ +++FK V+F Y +R + I+KD
Sbjct: 348 YMKSLEATNSLYEIINRKPLVENND-DGKKLKDI-KKIQFKNVRFHYDTRKDVEIYKDLN 405
Query: 384 LTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIIL-DGVSIDKLQLKWLRSQMGLV 442
T+ GKT A VG SG GKST++ L++R Y P G+II+ D ++ + LKW RS++G+V
Sbjct: 406 FTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVV 465
Query: 443 SQEPALFATSIKENILFG--------------KEDAS----------------------- 465
SQ+P LF+ SIK NI + ED +
Sbjct: 466 SQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDM 525
Query: 466 -----MEEVIEAAKASNA---------------HNFIRQLPQQYDTQVGERGVQMSGGQK 505
E+IE K H+F+ LP +Y+T VG ++SGGQK
Sbjct: 526 SNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQK 585
Query: 506 QRIAIARAIIKAPRILLLDEATSALDSESERVVQEALD--KAVVGRTTIIIAHRLSTIRN 563
QRI+IARAII+ P+IL+LDEATS+LD++SE +VQ+ ++ K R TIIIAHRLSTIR
Sbjct: 586 QRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRY 645
Query: 564 ADVIAVVQDGQ-----------------------------------------------VM 576
A+ I V+ + + ++
Sbjct: 646 ANTIFVLSNRERGSTVDVDIIGEDPTKDNKENNNKNNKDDNNNNNNNNNNKINNAGSYII 705
Query: 577 ETGSHDELIQAESGLYTSLVRLQ------TTTPDDNNNATMHSLASKSSNMDMNSTSSRR 630
E G+HD L++ ++G+Y +++ Q ++ D++ ++ M S A K S +
Sbjct: 706 EQGTHDALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDSDMKSSAYKDSERGYDPDEMNG 765
Query: 631 LSI-VSLSSSANSFAQGRGASQSNEEDIKKLP-----------VPSFRRLVALNAPEWKQ 678
S + S+S + + S KLP P+ R+V +K+
Sbjct: 766 NSKHENESASNKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYKK 825
Query: 679 -ATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVIN 737
T+ + + G + P++A +S F D ++ ++ Y+ L +A+ +
Sbjct: 826 DVTIIALSILVAGGLYPVFALLYAKYVSTLF--DFANLEANSNKYSLYILVIAIAMFISE 883
Query: 738 IIQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVG 797
+++Y +GE + K ++ R+ IL E+ +FDQD+++ G + + + +D +++++ +
Sbjct: 884 TLKNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLV 943
Query: 798 DRTALLVQTISAVTIAFTMGLFIAWRLALVMIAVQPLVIICFYARRVLLKS--MSNKAIK 855
+ + I ++ M + +A V+ + + F R L + + K I
Sbjct: 944 NNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAIRARLTANKDVEKKEIN 1003
Query: 856 AQA-------------ESSKLAAEAVSNLRTITAFSSQHRILKMLEKA----QQGPRRES 898
+ S L EA N+ T+ + + ++EKA +G +R++
Sbjct: 1004 QPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKT 1063
Query: 899 IRQSWYAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADA 958
+ S G FSQS + +W+G LI G I ++ + TG
Sbjct: 1064 LVNSMLWG----FSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKL 1119
Query: 959 GSMTTDIAKGSDAVGSVFAVMDRYTKIEPEDPEG---HQPERITGNIELQNVHFAYPARP 1015
S+ D + + ++ R + I+ D G I G IE+ +V+F Y +RP
Sbjct: 1120 MSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRP 1179
Query: 1016 DVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGD 1060
+V I++ + ++ K+TA+VG++GSGKST++ L+ RFYD LK D
Sbjct: 1180 NVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYD-LKND 1223
|
Length = 1466 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 349 bits (898), Expect = e-106
Identities = 194/579 (33%), Positives = 305/579 (52%), Gaps = 33/579 (5%)
Query: 37 VLGYIGAIGDGFSTPLVL----FLTSKFMNNIGGVSNVPID-VFTHNINKNTVHLLYLAL 91
+ Y + + L+L T F + ID V +++T+ +L + L
Sbjct: 149 LFKYRRLLFEVLLASLLLQLLALATPLFSQIV-------IDKVLPDA-SRSTLTVLAIGL 200
Query: 92 GSWVACF------LEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSV 145
A F L Y G+R + R+ + +LR + YF+ S E+I+ V
Sbjct: 201 L-LAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEKR--SVGEIISRV 257
Query: 146 SNDSLVIQDAISEKLPNFVMNASLFFGCYLVA-FLMLWRLAIVGFPFVVLLVIPGLMYGR 204
+ I++ ++ + +++ LF +L FL W+L ++ + L V+ L++
Sbjct: 258 -RELEQIREFLTGSILTLIID-LLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQP 315
Query: 205 TLMSLARK-MRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGLKQGL 263
L RK + + + + E I I TV A E + +++ + L V +G K
Sbjct: 316 LLRRKTRKLIEESAEQQSFLVE-TIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEK 374
Query: 264 AKGLAIGSNGVTFGIWSFLC-YYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNL- 321
+ + + S L ++G+ +V+ G + A +A ++ L L
Sbjct: 375 LALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAF-NMLAGYFISPITRLSQLW 433
Query: 322 KYFSEAMAAGERIMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKD 381
F +A A ER+ +++ P+ + D L + GE+EF+ V F Y ++ +D
Sbjct: 434 TDFQQAKVALERLGDILDTPPEQEGDK-TLIHLPKLQGEIEFENVSFRYGPDDPPVL-ED 491
Query: 382 FCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGL 441
L IP G+ VA+VG SGSGKST++ LL Y P G I+LDGV ++ + L LR Q+G
Sbjct: 492 LSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGY 551
Query: 442 VSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMS 501
V Q+P LF+ SI+ENI G +A+ EE+IEAA+ + AH FI LP YDT VGE G +S
Sbjct: 552 VLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLS 611
Query: 502 GGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTI 561
GGQ+QR+A+ARA++ P+ILLLDEATSALD E+E ++ + L + + GRT IIIAHRLSTI
Sbjct: 612 GGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTI 671
Query: 562 RNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQT 600
R+AD I V+ G+++E GSH+EL+ A+ GLY L + Q
Sbjct: 672 RSADRIIVLDQGKIVEQGSHEELL-AQGGLYARLYQQQE 709
|
Length = 709 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 314 bits (807), Expect = 1e-99
Identities = 131/239 (54%), Positives = 172/239 (71%), Gaps = 3/239 (1%)
Query: 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI 420
+EF+ V FAY P + KD TIPAGK VA+VG SGSGKST++ LL RFY G I
Sbjct: 1 IEFENVTFAYD--PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI 58
Query: 421 ILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHN 480
++DG I ++ L LR +G+V Q+ LF +I NI +G+ DA+ EEVIEAAKA+ H+
Sbjct: 59 LIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHD 118
Query: 481 FIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQE 540
I + P YDT VGERG+++SGG+KQR+AIARAI+K P ILLLDEATSALD+ +ER +Q
Sbjct: 119 KIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQA 178
Query: 541 ALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQ 599
AL GRTTI+IAHRLSTI NAD I V++DG+++E G+H+EL+ A+ GLY + + Q
Sbjct: 179 ALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELL-AKGGLYAEMWKAQ 236
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 308 bits (790), Expect = 3e-97
Identities = 118/228 (51%), Positives = 172/228 (75%), Gaps = 2/228 (0%)
Query: 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGG 418
GE+EF+ V F+Y + + KD +I G+TVA+VG +G+GK+T+I LL RFY P G
Sbjct: 1 GEIEFENVNFSY--DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKG 58
Query: 419 EIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNA 478
+I++DG+ I + K LRS +G+V Q+ LF+ +I ENI G+ +A+ EEVIEAAK + A
Sbjct: 59 QILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGA 118
Query: 479 HNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVV 538
H+FI +LP YDT +GE G +S G++Q +AIARA+++ P+IL+LDEATS +D+E+E+++
Sbjct: 119 HDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLI 178
Query: 539 QEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQ 586
QEAL+K + GRT+IIIAHRLSTI+NAD I V+ DG+++E G+HDEL+
Sbjct: 179 QEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA 226
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 320 bits (821), Expect = 5e-97
Identities = 177/524 (33%), Positives = 282/524 (53%), Gaps = 31/524 (5%)
Query: 89 LALGSWVACFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSND 148
LA+ + F+ Y + + +R R + +L V +FD T +++ ++ D
Sbjct: 63 LAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQ--PTGTLLSRITFD 120
Query: 149 SLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLWRLAIVGFPFVVLLVIPGLM--YGRTL 206
S + A ++ V G ++V W+L ++ V+L V+ LM + L
Sbjct: 121 SEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLI--VVVMLPVLSILMRRVSKRL 178
Query: 207 MSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGLKQGLAKG 266
+++++++ + T+AE+ + R V F G++ F + + +L +K A
Sbjct: 179 RRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGS 238
Query: 267 LAIGSNGVTFGIWSFLCYYGSRMVMY---HGAQGGTVFAVGASIAVGGLALGAGLPNLKY 323
+ S+ +T + +V++ AQ G++ A A+ A + LK
Sbjct: 239 I---SSPIT----QLIASLALAVVLFIALFQAQAGSLTA--GDFTAFITAMIALIRPLKS 289
Query: 324 FSE-------AMAAGERIMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPES 376
+ +AA E + ++ P+ D+ + +E G+VEF+ V F YP R +
Sbjct: 290 LTNVNAPMQRGLAAAESLFTLLDSPPEKDTGTRA---IERARGDVEFRNVTFRYPGR-DR 345
Query: 377 IIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLR 436
L I G+TVALVG SGSGKST++ L+ RFY P G+I+LDG + L LR
Sbjct: 346 PALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLR 405
Query: 437 SQMGLVSQEPALFATSIKENILFGK-EDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGE 495
Q+ LVSQ+ LF +I NI +G+ E A E+ A A+ A +F+ +LP DT +GE
Sbjct: 406 RQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGE 465
Query: 496 RGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIA 555
GV +SGGQ+QR+AIARA++K IL+LDEATSALD+ESER+VQ AL++ + GRTT++IA
Sbjct: 466 NGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIA 525
Query: 556 HRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQ 599
HRLSTI AD I V+ DG+++E G+H+EL+ A +GLY L +Q
Sbjct: 526 HRLSTIEKADRIVVMDDGRIVERGTHNELL-ARNGLYAQLHNMQ 568
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 293 bits (751), Expect = 5e-87
Identities = 124/252 (49%), Positives = 171/252 (67%), Gaps = 3/252 (1%)
Query: 354 LENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFY 413
L V G VEF V F+Y + + + +D G+TVA+VG +G+GKST+I LLQR +
Sbjct: 328 LGRVKGAVEFDDVSFSYDNSRQGV--EDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVF 385
Query: 414 APLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAA 473
P G I++DG I + LR + +V Q+ LF SI++NI G+ DA+ EE+ AA
Sbjct: 386 DPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAA 445
Query: 474 KASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSE 533
+ + AH+FI + P YDT VGERG Q+SGG++QR+AIARA++K P IL+LDEATSALD E
Sbjct: 446 ERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVE 505
Query: 534 SERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYT 593
+E V+ ALD+ + GRTT IIAHRLST+RNAD I V +G+V+E+GS DEL+ A G +
Sbjct: 506 TEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELV-ARGGRFA 564
Query: 594 SLVRLQTTTPDD 605
+L+R Q +D
Sbjct: 565 ALLRAQGMLQED 576
|
Length = 588 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 289 bits (742), Expect = 9e-86
Identities = 180/517 (34%), Positives = 283/517 (54%), Gaps = 35/517 (6%)
Query: 98 FLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAIS 157
F+ YC + + MR R ++ V +FD ST +++ ++ DS + + S
Sbjct: 83 FISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQ--STGTLLSRITYDSEQVASSSS 140
Query: 158 EKLPNFVMNASLFFGCYLVAFLMLWRLAIVGF---PFVVLLVIPGLMYGRTLMSLARKMR 214
L V + G +++ F W+L+++ P V + + ++ R ++++ M+
Sbjct: 141 GALITVVREGASIIGLFIMMFYYSWQLSLILIVIAPIVSIAI--RVVSKR-FRNISKNMQ 197
Query: 215 DEYNKAGTIAEQAISSIRTVYAFVG---ESKTINEFSSALQGSVQLGLKQGLAKGLAIGS 271
+ + T AEQ + + V F G E+K ++ S+ ++ Q G+K A + S
Sbjct: 198 NTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMR---QQGMKMVSASSI---S 251
Query: 272 NGVTFGIWS----FLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNL----KY 323
+ + I S F+ Y S + GT+ V +S+ +AL L +L
Sbjct: 252 DPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSM----IALMRPLKSLTNVNAQ 307
Query: 324 FSEAMAAGERIMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFC 383
F MAA + + ++ + D +E G++EF+ V F YP + E ++
Sbjct: 308 FQRGMAACQTLFAILDLEQEKDEGKRV---IERAKGDIEFRNVTFTYPGK-EVPALRNIN 363
Query: 384 LTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVS 443
IPAGKTVALVG SGSGKST+ LL RFY GEI+LDG + L LR+Q+ LVS
Sbjct: 364 FKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVS 423
Query: 444 QEPALFATSIKENILFGKEDA-SMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSG 502
Q LF +I NI + + + S E++ EAA+ + A +FI ++ DT +GE GV +SG
Sbjct: 424 QNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSG 483
Query: 503 GQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIR 562
GQ+QRIAIARA+++ IL+LDEATSALD+ESER +Q ALD+ RT+++IAHRLSTI
Sbjct: 484 GQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE 543
Query: 563 NADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQ 599
AD I VV+DG+++E G+H EL+ A++G+Y L ++Q
Sbjct: 544 KADEILVVEDGEIVERGTHAELL-AQNGVYAQLHKMQ 579
|
Length = 582 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 272 bits (697), Expect = 3e-84
Identities = 116/217 (53%), Positives = 164/217 (75%)
Query: 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGG 418
G V+F+ V FAYP+RP++++ +D T+ G+ ALVG SGSGKSTV+ALL+ FY P GG
Sbjct: 10 GIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGG 69
Query: 419 EIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNA 478
+++LDG I + + K+L S++ LV QEP LFA S+++NI +G + S E V EAA+ ++A
Sbjct: 70 QVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHA 129
Query: 479 HNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVV 538
H+FI +L YDT+VGE+G Q+SGGQKQR+AIARA+I+ P++L+LDEATSALD+ESE+ V
Sbjct: 130 HSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQV 189
Query: 539 QEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQV 575
Q+AL RT ++IAHRLST+ AD I V+ G++
Sbjct: 190 QQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 268 bits (688), Expect = 1e-82
Identities = 125/240 (52%), Positives = 165/240 (68%), Gaps = 4/240 (1%)
Query: 361 VEFKCVQFAYPSRPES-IIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGE 419
+ F+ V+F Y +P+ +I + L I G+ V +VG SGSGKST+ L+QRFY P G
Sbjct: 1 ITFEHVRFRY--KPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGR 58
Query: 420 IILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAH 479
+++DG + WLR Q+G+V QE LF SI++NI SME VIEAAK + AH
Sbjct: 59 VLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAH 118
Query: 480 NFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQ 539
+FI +LP+ YDT VGE+G +SGGQ+QRIAIARA+I PRIL+ DEATSALD ESE +
Sbjct: 119 DFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIM 178
Query: 540 EALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQ 599
+ GRT IIIAHRLST++NAD I V++ G+++E GSHDEL+ AE+GLY L +LQ
Sbjct: 179 RNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELL-AENGLYAYLYQLQ 237
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 282 bits (723), Expect = 4e-82
Identities = 189/580 (32%), Positives = 288/580 (49%), Gaps = 65/580 (11%)
Query: 55 FLTSKFMNNIGGVS----NVPID-VFTHNINKNTVHLLYLALGSWVACFLEGYCWTRT-- 107
L S + V+ V ID V H +T+ +L LA+ VA F RT
Sbjct: 145 LLISLALQLFALVTPLLFQVVIDKVLVHR-GLSTLSVLALAM-LAVAIFEPALGGLRTYL 202
Query: 108 ----GERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNF 163
R + AR + +L +GYF+ + + V E++ NF
Sbjct: 203 FAHLTSRIDVELGARLYRHLLGLPLGYFESR--RVGDTVARVRE---------LEQIRNF 251
Query: 164 VMNASL------FFGCYLVAFLMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEY 217
+ ++L F +A +M + + + LV L+ L +++ D++
Sbjct: 252 LTGSALTVVLDLLFVVVFLA-VMFFYSPTLTGVVIGSLVCYALLSVFVGPILRKRVEDKF 310
Query: 218 NK---AGTIAEQAISSIRTVYAFVGESKTINEFSSAL-------QGSVQLGLKQGLAKGL 267
+ A + ++++ I T+ A E + N + L LG G A L
Sbjct: 311 ERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIEL 370
Query: 268 AIGSNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKY---- 323
+TF I L ++G+ +V+ GG + + G +A LA P L+
Sbjct: 371 I---QKLTFAI---LLWFGAHLVI-----GGAL-SPGQLVAFNMLAGRVTQPVLRLAQLW 418
Query: 324 --FSEAMAAGERIMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAY-PSRPESIIFK 380
F + A ER+ +++ + S + L + G + F+ ++F Y P PE +
Sbjct: 419 QDFQQTGIALERLGDILNSPTEPRSAGLAA--LPELRGAITFENIRFRYAPDSPE--VLS 474
Query: 381 DFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440
+ L I G+ + +VG SGSGKST+ LLQR Y P G++++DGV + WLR QMG
Sbjct: 475 NLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMG 534
Query: 441 LVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQM 500
+V QE LF+ SI++NI A E VI AAK + AH+FI +LPQ Y+T+VGE+G +
Sbjct: 535 VVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANL 594
Query: 501 SGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLST 560
SGGQ+QRIAIARA++ PRIL+ DEATSALD ESE ++ + + GRT IIIAHRLST
Sbjct: 595 SGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLST 654
Query: 561 IRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQT 600
+R D I V++ GQ+ E+G H+EL+ A GLY L + Q+
Sbjct: 655 VRACDRIIVLEKGQIAESGRHEELL-ALQGLYARLWQQQS 693
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 271 bits (694), Expect = 3e-79
Identities = 148/457 (32%), Positives = 231/457 (50%), Gaps = 13/457 (2%)
Query: 677 KQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVI 736
K L + L + + +G +I + ++ L LA+ V+
Sbjct: 14 KLLLLAILLLLLSALLSLLLPLLIGRIIDALLADLGELLE-----LLLLLLLLALLGGVL 68
Query: 737 NIIQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLV 796
+Q Y + +G+ + +R + K+L + +FD+ SG + SRL D V +LV
Sbjct: 69 RALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDK--AKSGDLISRLTNDVEAVSNLV 126
Query: 797 GDRTALLVQTISAVTIAFTMGLFIAWRLALVMIAVQPLVIICFYARRVLLKSMSNKAIKA 856
L+ +I + + + ++WRLAL+++ + PL+ + + +S + +A
Sbjct: 127 STVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSRRVREA 186
Query: 857 QAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSWYAGIGLAFSQSLA 916
E + E++S +R I AF ++ R LK E+A + RR ++R S + L+
Sbjct: 187 LGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLS 246
Query: 917 SCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVF 976
S L GG L+ G ++ AL + L+ I G + + + + S A +F
Sbjct: 247 SLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLF 306
Query: 977 AVMDRYTKIEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALV 1036
++D + E EDP + I G+IE +NV F+YP + + S IE G+ A+V
Sbjct: 307 ELLD--EEPEVEDPPDPLKDTI-GSIEFENVSFSYP--GKKPVLKDISFSIEPGEKVAIV 361
Query: 1037 GQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRE 1096
G SGSGKST+I L+ R YDP G++ ID DIR L SLR+ I +VSQ+P LF+GTIRE
Sbjct: 362 GPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRE 421
Query: 1097 NIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133
NIA G D DE EI EA K ANAH+FIA L +GYDT
Sbjct: 422 NIALGRPDATDE-EIEEALKLANAHEFIANLPDGYDT 457
|
Length = 567 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 265 bits (679), Expect = 4e-78
Identities = 148/397 (37%), Positives = 221/397 (55%), Gaps = 26/397 (6%)
Query: 211 RKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGLKQGLAKG-LAI 269
R M + + A A ++ + TV F E + AL+ + +K ++ L
Sbjct: 112 RLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLVLNF 171
Query: 270 GSNGVTFGIWSFLCYYGSRMVMYHGAQG--------GTVFAVGA---SIAVGGLALGAGL 318
G + F G R++M A G G + V A +++ LG
Sbjct: 172 GQTAI-FST-------GLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSY 223
Query: 319 PNLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESII 378
++ +A+ E++ +++ ++ + LG V F V FAY P I
Sbjct: 224 REIR---QALTDMEKMFDLLDVEAEVSDAPDAPPLWPVRLGAVAFINVSFAY--DPRRPI 278
Query: 379 FKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438
TIP GKTVA+VG SG+GKST++ LL RFY G I +DG I + + LR
Sbjct: 279 LNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRA 338
Query: 439 MGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGV 498
+G+V Q+ LF +I NI +G+ DA+ EEV AA+A+ H+FI+ LP+ YDT VGERG+
Sbjct: 339 IGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGL 398
Query: 499 QMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRL 558
++SGG+KQR+AIAR I+K P IL+LDEATSALD+ +E+ +Q AL + GRTT++IAHRL
Sbjct: 399 KLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRL 458
Query: 559 STIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSL 595
STI +AD I V+ +G+++E G+H+EL+ A GLY +
Sbjct: 459 STIIDADEIIVLDNGRIVERGTHEELLAAG-GLYAEM 494
|
Length = 497 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 265 bits (678), Expect = 9e-76
Identities = 150/511 (29%), Positives = 248/511 (48%), Gaps = 28/511 (5%)
Query: 632 SIVSLSSSANSFAQGRGASQSNEEDIKKLPVPSFRRLVALNAPEWKQATLGCVGATLFGA 691
++ + + A + G ++ + + + RL+ L+ +W V TL
Sbjct: 118 ALPAAALWAVLSSAGASEKEAEQGQSETADL--LFRLLGLSGRDWPWLISAFVFLTLSSL 175
Query: 692 VQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINIIQHYNFAYMGEHL 751
+ F G +I D ++I+ C L +A +N+ +
Sbjct: 176 GEMFIPFYTGRVIDT-LGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFNYTM--ARI 232
Query: 752 TKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVT 811
RIRE + +L ++G+FD EN +G + SRL+ D + + +L++ + +
Sbjct: 233 NLRIREDLFRSLLRQDLGFFD--ENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLL 290
Query: 812 IAFTMGLFIAWRLALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQ---AESSKLAAEAV 868
L+++ RL +V + PLV F A +V K + + Q A+++++A EA+
Sbjct: 291 GLLGFMLWLSPRLTMVTLINLPLV---FLAEKVFGKRYQLLSEELQEAVAKANQVAEEAL 347
Query: 869 SNLRTITAFSSQH----RILKMLEKAQQGPRRESIRQSWYAGIGLAFSQSL-ASCTWALD 923
S +RT+ +F+++ R + LE+ Q +R+++ A G ++ S+ L
Sbjct: 348 SGMRTVRSFAAEEGEASRFKEALEETLQLNKRKAL-----AYAGYLWTTSVLGMLIQVLV 402
Query: 924 FWYGGRLIADGYISSKALFETFMIL-VSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRY 982
+YGG+L+ G +SS L +F++ G + + + + + A VF +DR
Sbjct: 403 LYYGGQLVLTGKVSSGNLV-SFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRK 461
Query: 983 TKIEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSG 1042
I P + G IE Q+V F+YP RPDV + +G + + G+ ALVG SGSG
Sbjct: 462 PNIPL--TGTLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSG 519
Query: 1043 KSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGA 1102
KST+ L++ Y P G V +D + Y L R +ALV QEP LF+G++RENIAYG
Sbjct: 520 KSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGL 579
Query: 1103 SDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133
+D DE EI+ AAKAANAHDFI GYDT
Sbjct: 580 TDTPDE-EIMAAAKAANAHDFIMEFPNGYDT 609
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 245 bits (628), Expect = 3e-75
Identities = 98/214 (45%), Positives = 128/214 (59%), Gaps = 43/214 (20%)
Query: 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI 420
+EFK V F+YP RP+ + KD LTI G+ VA+VG SGSGKST++ LL R Y P GEI
Sbjct: 1 IEFKNVSFSYPGRPK-PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI 59
Query: 421 ILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHN 480
++DGV + L L+ LR + V Q+P LF+ +I+ENIL
Sbjct: 60 LIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENIL---------------------- 97
Query: 481 FIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQE 540
SGGQ+QRIAIARA+++ P IL+LDEATSALD E+E ++ E
Sbjct: 98 --------------------SGGQRQRIAIARALLRDPPILILDEATSALDPETEALILE 137
Query: 541 ALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQ 574
AL G+T I+IAHRLSTIR+AD I V+ DG+
Sbjct: 138 ALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 250 bits (639), Expect = 1e-71
Identities = 164/449 (36%), Positives = 248/449 (55%), Gaps = 41/449 (9%)
Query: 176 VAFLMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARK----MRDEYNKAGTIAEQAISSI 231
AF M WRL+IV +++L I ++ + +M + + Y+ +IS++
Sbjct: 150 TAFAMDWRLSIV----LMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNV 205
Query: 232 RTVYAF---VGESKTINEFSSALQGSVQLGLKQGLAKGLAIGSNGVTFGIWSFLCYYGSR 288
V+++ E+ + +F++ L S Q + A LA G N + I S +C
Sbjct: 206 SVVHSYNRIEAETSALKQFTNNLL-SAQYPVLDWWA--LASGLNRMASTI-SMMCI---- 257
Query: 289 MVMYHGAQGGTVFAVGASIAVGGLALGAGLPNL--------KYFS----EAMAAGERIME 336
+V+ GTV + ++VG + G NL F EA A E +
Sbjct: 258 LVI------GTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFD 311
Query: 337 MIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVG 396
+ V + + + E L NV G VEF+ + F + + + + D AG+TVA+VG
Sbjct: 312 LEDSVFQREEPADAPE-LPNVKGAVEFRHITFEFANSSQGV--FDVSFEAKAGQTVAIVG 368
Query: 397 GSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKEN 456
+G+GK+T+I LLQR Y P G+I++DG+ I+ + + LR + V Q+ LF SI+EN
Sbjct: 369 PTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIREN 428
Query: 457 ILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIK 516
I G+E A+ EEV EAAKA+ AH+FI + YDT VGERG ++SGG++QR+AIARAI+K
Sbjct: 429 IRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILK 488
Query: 517 APRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVM 576
IL+LDEATSALD E+E V+ A+D RTT IIAHRLST+RNAD++ + G+++
Sbjct: 489 NAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLI 548
Query: 577 ETGSHDELIQAESGLYTSLVRLQTTTPDD 605
E GS ELIQ + G + L+R +
Sbjct: 549 EKGSFQELIQ-KDGRFYKLLRRSGLLTNQ 576
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 250 bits (640), Expect = 1e-70
Identities = 151/526 (28%), Positives = 256/526 (48%), Gaps = 37/526 (7%)
Query: 90 ALGSWVACFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSV-SND 148
AL V +L+ Y R + A M AR+L +LR V +F ++ + V ND
Sbjct: 204 ALLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFAQR--HAGDIASRVQLND 261
Query: 149 SLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLWRLAIVGFPFVVLLVIPGLMYGRTLMS 208
+ + +S +L ++A + L+ L L ++G F + V+ + R +
Sbjct: 262 Q--VAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVD 319
Query: 209 LARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFS----SALQGSVQLGLKQ--- 261
R+++ + K +A + SI T+ A ES + ++ L +LG+
Sbjct: 320 ANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQIL 379
Query: 262 -GLAKGLAIGSNGVTFGIWSFLCYYGSRMV-MYHGAQGGTVFAVGASIAVGGL-ALGAGL 318
L L ++ + + G + M Q V L G L
Sbjct: 380 GVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQS---LMSSFLEPVNNLVGFGGTL 436
Query: 319 P----NLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRP 374
+L + + + +++ + S L G VE + + F Y S
Sbjct: 437 QELEGDLNRLDDVLRN--PVDPLLEEEEAPAAGSEPSPRLS---GYVELRNITFGY-SPL 490
Query: 375 ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKW 434
E + ++F LT+ G+ VALVGGSGSGKST+ L+ Y P GEI+ DG+ +++ +
Sbjct: 491 EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREV 550
Query: 435 LRSQMGLVSQEPALFATSIKENI-LFGKEDASM--EEVIEAAKASNAHNFIRQLPQQYDT 491
L + + +V Q+ LF ++++N+ L+ D ++ +++ A K + H+ I P YD
Sbjct: 551 LANSVAMVDQDIFLFEGTVRDNLTLW---DPTIPDADLVRACKDAAIHDVITSRPGGYDA 607
Query: 492 QVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTT 551
++ E G +SGGQ+QR+ IARA+++ P IL+LDEATSALD E+E+++ + L + G T
Sbjct: 608 ELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRR--GCTC 665
Query: 552 IIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVR 597
II+AHRLSTIR+ D I V++ G+V++ G+H+EL G Y L+R
Sbjct: 666 IIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAVG-GAYARLIR 710
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 239 bits (612), Expect = 4e-68
Identities = 136/475 (28%), Positives = 228/475 (48%), Gaps = 19/475 (4%)
Query: 664 SFRRLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYA 723
+FRRL + P L V L A + A + L D + S+
Sbjct: 1 TFRRLWSYVRPYKAGLVLAGVAMILVAATESTLAALLKP------LLDDGFGGRDRSVLW 54
Query: 724 FCFL---GLAVFTLVINIIQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGA 780
+ L GLAV + + + Y +++ + + IR RM K+L V +FD +G
Sbjct: 55 WVPLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFD--RQPTGT 112
Query: 781 ICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWRLALVMIAVQPLV--IIC 838
+ SR+ D+ V S D +LV+ V F + L+ +W+L L+++ + P++ ++
Sbjct: 113 LLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMR 172
Query: 839 FYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRES 898
++R L+ +S + + + + +A E + R + F Q + + RR +
Sbjct: 173 RVSKR--LRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLA 230
Query: 899 IRQSWYAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADA 958
++ + I +Q +AS A+ + G +++ +++ R +
Sbjct: 231 MKMTSAGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSL 290
Query: 959 GSMTTDIAKGSDAVGSVFAVMDRYTKIEPEDPEGHQPERITGNIELQNVHFAYPARPDVM 1018
++ + +G A S+F ++D + E D ER G++E +NV F YP R D
Sbjct: 291 TNVNAPMQRGLAAAESLFTLLD--SPPEK-DTGTRAIERARGDVEFRNVTFRYPGR-DRP 346
Query: 1019 IFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRR 1078
+ S+ IE G++ ALVG+SGSGKST++ LI RFY+P G + +D D+ Y L SLRR
Sbjct: 347 ALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRR 406
Query: 1079 HIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133
+ALVSQ+ LF TI NIAYG +++ D +EI A AA A DF+ L G DT
Sbjct: 407 QVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDT 461
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 236 bits (603), Expect = 6e-67
Identities = 100/240 (41%), Positives = 152/240 (63%), Gaps = 4/240 (1%)
Query: 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGE 419
E+ + + F YP ++ D LTI AG+ ALVG SG+GKST++ LL F AP GE
Sbjct: 320 EISLENLSFRYPDGKPAL--SDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGE 377
Query: 420 IILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAH 479
I ++G+ + L + R Q+ VSQ P LFA +I+ENIL + DAS EE+I A +
Sbjct: 378 IRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLL 437
Query: 480 NFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQ 539
F+ + P DT +GE G +SGGQ QR+A+ARA++ +LLLDE T+ LD+E+E+++
Sbjct: 438 EFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIIL 496
Query: 540 EALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQ 599
+AL + +T ++I HRL +AD I V+ +G+++E G+H+EL + GLY +L++ Q
Sbjct: 497 QALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEEL-SEKQGLYANLLKQQ 555
|
Length = 559 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 222 bits (568), Expect = 5e-66
Identities = 79/132 (59%), Positives = 93/132 (70%), Gaps = 1/132 (0%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
IE +NV F YP+RPDV I +G S+ I GK+ ALVG SG GKST++ L+ERFYDP G++
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 1062 KIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAH 1121
+D DIR +LR LR I LVSQEP LF GTI ENI YG D DE E+ EAAK AN H
Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDE-EVEEAAKKANIH 119
Query: 1122 DFIAGLNEGYDT 1133
DFI L +GYDT
Sbjct: 120 DFIMSLPDGYDT 131
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 234 bits (600), Expect = 2e-65
Identities = 144/463 (31%), Positives = 236/463 (50%), Gaps = 39/463 (8%)
Query: 137 STAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLWRLAIVGFPFVVLLV 196
S + TS + +L+ LP F + LF LV ++ L V + L++
Sbjct: 254 SVRDFFTSATLTALI-------DLP-FAL---LFL---LVIAIIGGPLVWVPLVAIPLIL 299
Query: 197 IPGLMYGRTLMSLARK-MRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSV 255
+PGL+ R L LA + MR+ + + E ++S + T+ A E + + +
Sbjct: 300 LPGLLLQRPLSRLAEESMRESAQRNAVLVE-SLSGLETIKALNAEGRFQRRWEQTVAALA 358
Query: 256 QLGLKQGLAKGLAIGSNG-----VTFGIWSFLCYYGS--RMVMYHGAQGGTVFAVG-ASI 307
+ GLK LA V+ I Y S + M GG + V +
Sbjct: 359 RSGLKSRFLSNLATNFAQFIQQLVSVAIVVVGVYLISDGELTM-----GGLIACVMLSGR 413
Query: 308 AVGGLALGAGLPNLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEIL---ENVLGEVEFK 364
A+ L AGL L + +A A + + E+++ + EG + GE+EF+
Sbjct: 414 ALAPLGQLAGL--LTRYQQAKTALQSLDELMQL----PVERPEGTRFLHRPRLQGEIEFR 467
Query: 365 CVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDG 424
V FAYP + + + LTI G+ VA++G GSGKST++ LL Y P G ++LDG
Sbjct: 468 NVSFAYPGQETPAL-DNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDG 526
Query: 425 VSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQ 484
V I ++ LR +G V Q+P LF ++++NI G A EE++ AA+ + F+R+
Sbjct: 527 VDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRR 586
Query: 485 LPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDK 544
P D Q+GERG +SGGQ+Q +A+ARA+++ P ILLLDE TSA+D+ SE ++ L +
Sbjct: 587 HPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKR 646
Query: 545 AVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQA 587
+ G+T +++ HR S + D I V+ +G+++ G D++++A
Sbjct: 647 WLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 218 bits (558), Expect = 6e-65
Identities = 88/217 (40%), Positives = 133/217 (61%), Gaps = 1/217 (0%)
Query: 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGG 418
G +EF+ V F+YP++ + + LTI AG+ VA++G GSGKST++ LL Y P G
Sbjct: 1 GRIEFRNVSFSYPNQEIPAL-DNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSG 59
Query: 419 EIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNA 478
++LDG I +L LR +G V Q+ LF ++++NI G A E ++ AA+ +
Sbjct: 60 SVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGV 119
Query: 479 HNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVV 538
+F+ + P D Q+GERG +SGGQ+Q +A+ARA++ P ILLLDE TSA+D SE +
Sbjct: 120 TDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERL 179
Query: 539 QEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQV 575
+E L + + +T III HR S + D I V+ G++
Sbjct: 180 KERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRI 216
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 229 bits (585), Expect = 2e-64
Identities = 122/417 (29%), Positives = 204/417 (48%), Gaps = 18/417 (4%)
Query: 726 FLGLAVFTLVINI---IQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAIC 782
F L V LV+ + + Y ++GE + IR + + +++ +FD+ N SG +
Sbjct: 61 FAFLLVVALVLALGTAARFYLVTWLGERVVADIRRAVFAHLISLSPSFFDK--NRSGEVV 118
Query: 783 SRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWRLALVMIAVQPLVI--ICFY 840
SRL D +++S++G ++ ++ M + +L +++ PLV+ I +
Sbjct: 119 SRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLF 178
Query: 841 ARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQH----RILKMLEKAQQGPRR 896
RRV + +S ++ A++ A E + +RT+ AF + R +EKA + R+
Sbjct: 179 GRRV--RKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQ 236
Query: 897 ESIRQSWYAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIA 956
++ A L W G + G +S+ L + V I
Sbjct: 237 RIRTRALL----TAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIG 292
Query: 957 DAGSMTTDIAKGSDAVGSVFAVMDRYTKIEPEDPEGHQPERITGNIELQNVHFAYPARPD 1016
+ ++ + + A + ++ I+ P + G IE + V+FAYPARPD
Sbjct: 293 TLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPD 352
Query: 1017 VMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSL 1076
+G ++ + G++ ALVG SG+GKST+ L+ RFYDP G + +D D+R L
Sbjct: 353 QPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAEL 412
Query: 1077 RRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133
R +ALV Q+P LFA ++ ENI YG D DE E+ AA+AA+AH+FI+ L EGYDT
Sbjct: 413 RARMALVPQDPVLFAASVMENIRYGRPDATDE-EVEAAARAAHAHEFISALPEGYDT 468
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 219 bits (560), Expect = 1e-61
Identities = 94/245 (38%), Positives = 136/245 (55%), Gaps = 4/245 (1%)
Query: 326 EAMAAGERIMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLT 385
+ +AA E + ++ P+ + + +EF V AYP R ++ + T
Sbjct: 289 DGVAAAEALFAVLDAAPRPLAGK--APVTAAPAPSLEFSGVSVAYPGRRPAL--RPVSFT 344
Query: 386 IPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQE 445
+P G+ VALVG SG+GKST++ LL F P G I ++GV + R Q+ V Q
Sbjct: 345 VPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQH 404
Query: 446 PALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQK 505
P LFA +I ENI + DAS E+ EA + + F+ LPQ DT +GE G +SGGQ
Sbjct: 405 PFLFAGTIAENIRLARPDASDAEIREALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQA 464
Query: 506 QRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNAD 565
QR+A+ARA ++ +LLLDE T+ LD+E+E V EAL GRT +++ HRL+ AD
Sbjct: 465 QRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVTHRLALAALAD 524
Query: 566 VIAVV 570
I V+
Sbjct: 525 RIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 222 bits (567), Expect = 4e-61
Identities = 165/515 (32%), Positives = 249/515 (48%), Gaps = 56/515 (10%)
Query: 110 RQATRMRARYLKAV----LRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVM 165
R TRM A AV LR V +F + ST ++ + S I+ +S ++
Sbjct: 202 RLETRMDASLQAAVWDRLLRLPVSFFRQY--STGDLASRAMGIS-QIRRILSGSTLTTLL 258
Query: 166 NASLFFGCYLVAFLML---WRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGT 222
+ +F L LM W+LA+V + LV + L+ + RK R +G
Sbjct: 259 -SGIFALLNLG--LMFYYSWKLALVAV--ALALVAIAVTLVLGLLQV-RKERRLLELSGK 312
Query: 223 IAEQA------ISSIRT----VYAFVGESKTINEFSSALQGSVQLGLKQGLA---KGLAI 269
I+ IS +R AF +K + L+ S Q ++ L L +
Sbjct: 313 ISGLTVQLINGISKLRVAGAENRAFARWAKLFSR-QRKLELSAQ-RIENLLTVFNAVLPV 370
Query: 270 GSNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASI-AVGGLALGAGLPNLKYFSEAM 328
++ F L + G+ A G+ AV L+ +
Sbjct: 371 LTSAALFAAAISL---LGGAGLSLGSFLAFNTAFGSFSGAVTQLSNT--------LISIL 419
Query: 329 AA---GERIMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPES-IIFKDFCL 384
A ER +++ +P++D + L G +E V F Y RP+ +I D L
Sbjct: 420 AVIPLWERAKPILEALPEVDEAKTDPGKLS---GAIEVDRVTFRY--RPDGPLILDDVSL 474
Query: 385 TIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQ 444
I G+ VA+VG SGSGKST++ LL F P G + DG + L ++ +R Q+G+V Q
Sbjct: 475 QIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQ 534
Query: 445 EPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQ 504
L + SI ENI G +++E EAA+ + IR +P T + E G +SGGQ
Sbjct: 535 NGRLMSGSIFENIA-GGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQ 593
Query: 505 KQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNA 564
+QR+ IARA+++ PRILL DEATSALD+ ++ +V E+L++ V R I+IAHRLSTIRNA
Sbjct: 594 RQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLKVTR--IVIAHRLSTIRNA 651
Query: 565 DVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQ 599
D I V+ G+V++ G++DEL+ E GL+ L R Q
Sbjct: 652 DRIYVLDAGRVVQQGTYDELMARE-GLFAQLARRQ 685
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 203 bits (519), Expect = 1e-59
Identities = 85/224 (37%), Positives = 138/224 (61%), Gaps = 6/224 (2%)
Query: 359 GEVEFKCVQFAYPSRPES-IIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLG 417
G++EFK V Y RP + K+ +I G+ V +VG +GSGKS+++ L R
Sbjct: 1 GDIEFKNVSLRY--RPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSS 58
Query: 418 GEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENI-LFGKEDASMEEVIEAAKAS 476
G I++DGV I K+ L LRS++ ++ Q+P LF+ +I+ N+ FG+ S EE+ +A +
Sbjct: 59 GSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGE--YSDEELWQALERV 116
Query: 477 NAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESER 536
F+ LP DT V E G +S GQ+Q + +ARA+++ +IL+LDEAT+++D E++
Sbjct: 117 GLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDA 176
Query: 537 VVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGS 580
++Q+ + +A T + IAHRL TI ++D I V+ G+V+E S
Sbjct: 177 LIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 214 bits (546), Expect = 2e-59
Identities = 108/271 (39%), Positives = 163/271 (60%), Gaps = 5/271 (1%)
Query: 329 AAGERIMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPA 388
AA RI M+ P + S E + GE++ QF YP + ++ T+
Sbjct: 285 AAYSRIRAMLAEAPVVKDGS---EPVPEGRGELDVNIRQFTYPQTDHPAL-ENVNFTLKP 340
Query: 389 GKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPAL 448
G+ + + G +GSGKST+++L+QR + G+I + + KLQL RS++ +VSQ P L
Sbjct: 341 GQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFL 400
Query: 449 FATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRI 508
F+ ++ NI G+ DA+ +E+ A+ ++ H+ I +LPQ YDT+VGERGV +SGGQKQRI
Sbjct: 401 FSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRI 460
Query: 509 AIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIA 568
+IARA++ IL+LD+A SA+D +E + L + GRT II AHRLS + A I
Sbjct: 461 SIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEIL 520
Query: 569 VVQDGQVMETGSHDELIQAESGLYTSLVRLQ 599
V+Q G + + G+HD+L Q +SG Y + R Q
Sbjct: 521 VMQHGHIAQRGNHDQLAQ-QSGWYRDMYRYQ 550
|
Length = 569 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 211 bits (540), Expect = 2e-58
Identities = 120/432 (27%), Positives = 201/432 (46%), Gaps = 38/432 (8%)
Query: 184 LAIVGFPFVVLLVIPGL--MYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGES 241
L + ++LL+IP L GR + + R T Q + +
Sbjct: 162 LLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLI-------F 214
Query: 242 KTINEFSSALQGSVQLGLKQGLAKGLAIGSNGVTFGIWS---FLCYYG---SRMVMYHGA 295
+ + +AL+ + LK + F S L G ++++ A
Sbjct: 215 GAEDAYRTALEATEASWLKAQRKQA--------RFTGLSDAILLLIAGLLVIGLLLWMAA 266
Query: 296 QGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAG-----ERIMEMIKRVPKIDSDSME 350
Q G A + LAL L+ F E +A G +++ +R+ I E
Sbjct: 267 QVG---AGALAQPGAALALLVIFAALEAF-EPLAPGAFQHLGQVIASARRLNDILDQKPE 322
Query: 351 ----GEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVI 406
E +E + V F YP ++ K+F LT+ G+ VA++G SGSGKST++
Sbjct: 323 VTFPDEQTATTGQALELRNVSFTYPG-QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLL 381
Query: 407 ALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASM 466
LL + P G I L+GV I L + LR + +++Q LF+ ++++N+ DAS
Sbjct: 382 QLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASD 441
Query: 467 EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEA 526
EE+ A + + P +T +GE G ++SGG+++R+A+ARA++ + LLDE
Sbjct: 442 EELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEP 501
Query: 527 TSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQ 586
T LD +ER V L + G+T +++ HRL + D I V+ +G+++E G+H EL+
Sbjct: 502 TEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELL- 560
Query: 587 AESGLYTSLVRL 598
A +G Y L +L
Sbjct: 561 ANNGRYKRLYQL 572
|
Length = 573 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 206 bits (526), Expect = 1e-56
Identities = 133/463 (28%), Positives = 228/463 (49%), Gaps = 67/463 (14%)
Query: 163 FVMNASLFFGCYLVAFLMLWRLAIV--GFPFVVLLVIPGLMY------GRTLMSLARKMR 214
V+ L G ++F LA+ G ++LL++P L Y G+ L L + R
Sbjct: 145 LVVILVLTIG---LSFFD-LTLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYR 200
Query: 215 D---EYNKAGTIAEQAISSIRTVYAFVGESK---TINEFSSALQGS--VQLGLKQGLAKG 266
E+ + QA ++ F E + + + + Q L GL++
Sbjct: 201 VQLTEW-----LQGQAELTL-----FGAEDRYRQQLEQTEQQWLAAQRRQANL-TGLSQA 249
Query: 267 LAIGSNGVTFGIWSFLCYYGSRMVMY---HGAQGGT---------VFAVGASI-AVGGLA 313
L I +NG+T + ++++ G G VFA A+ A+ +A
Sbjct: 250 LMILANGLT------VV-----LMLWLAAGGVGGNAQPGALIALFVFAALAAFEALMPVA 298
Query: 314 LGAGLPNLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSR 373
GA ++ + +A+ RI E+ ++ P++ + + + V F YP +
Sbjct: 299 -GA----FQHLGQVIASARRINEITEQKPEVTFPTTSTAAADQ--VSLTLNNVSFTYPDQ 351
Query: 374 PESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLK 433
P+ ++ K L I AG+ VAL+G +G GKST++ LL R + P GEI+L+G I
Sbjct: 352 PQPVL-KGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEA 410
Query: 434 WLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQV 493
LR + +VSQ LF+ ++++N+L +AS E +IE + + + + + +
Sbjct: 411 ALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLL-EDDKGLNAWL 469
Query: 494 GERGVQMSGGQKQRIAIARAIIK-APRILLLDEATSALDSESERVVQEALDKAVVGRTTI 552
GE G Q+SGG+++R+ IARA++ AP +LLLDE T LD+E+ER + E L + +T +
Sbjct: 470 GEGGRQLSGGEQRRLGIARALLHDAP-LLLLDEPTEGLDAETERQILELLAEHAQNKTVL 528
Query: 553 IIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSL 595
+I HRL+ + D I V+ +GQ++E G+H EL+ + G Y L
Sbjct: 529 MITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQQ-GRYYQL 570
|
Length = 574 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 208 bits (532), Expect = 2e-56
Identities = 155/562 (27%), Positives = 257/562 (45%), Gaps = 75/562 (13%)
Query: 72 IDVFTHNINKNTVHLLYLAL-GSW----VACFLEGYCWTRTGERQATRMRARYLKAVLRQ 126
ID + + T+ ++ + L ++ + +++ + G+R + + Y+K +
Sbjct: 183 IDTYIPHKMMGTLGIISIGLIIAYIIQQILSYIQIFLLNVLGQRLSIDIILSYIKHLFEL 242
Query: 127 DVGYFDLHVTSTAEV--ITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLWRL 184
+ +F ST I S D+ I DA++ + L FL +W L
Sbjct: 243 PMSFF-----STRRTGEIVSRFTDASSIIDALASTI--------------LSLFLDMWIL 283
Query: 185 AIVGFPFV---------VLLVIPGLMYGRTLMSLAR---KMRDEYNKAGTIAEQAI---- 228
IVG V LL IP +Y ++ R K+ + +A + +I
Sbjct: 284 VIVGLFLVRQNMLLFLLSLLSIP--VYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDL 341
Query: 229 SSIRTVYAFVGE----SKTINEFSSALQGS--------VQLGLKQGLAKGLAIGSNGVTF 276
+ I T+ + E SK +EF L S Q +K L +
Sbjct: 342 NGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKAVTKLILNV------- 394
Query: 277 GIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLK-YFSEAMAAGERIM 335
+ + G+ +VM G + A ++ L + NL+ A A R+
Sbjct: 395 ----VILWTGAYLVMRGKLTLGQLITFNALLSYFLTPL-ENIINLQPKLQAARVANNRLN 449
Query: 336 EMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALV 395
E + V + + L N+ G++ V ++Y I D LTI +V
Sbjct: 450 E-VYLVDSEFINKKKRTELNNLNGDIVINDVSYSYGYGSN--ILSDISLTIKMNSKTTIV 506
Query: 396 GGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKE 455
G SGSGKST+ LL F+ GEI+L+G S+ + LR + + QEP +F+ SI E
Sbjct: 507 GMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILE 566
Query: 456 NILFG-KEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAI 514
N+L G KE+ S +E+ A + + + I +P Y T++ E G +SGGQKQRIA+ARA+
Sbjct: 567 NLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARAL 626
Query: 515 IKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQ 574
+ ++L+LDE+TS LD+ +E+ + L + +T I +AHRLS + +D I V+ G+
Sbjct: 627 LTDSKVLILDESTSNLDTITEKKIVNNLLN-LQDKTIIFVAHRLSVAKQSDKIIVLDHGK 685
Query: 575 VMETGSHDELIQAESGLYTSLV 596
++E GSHDEL+ +G Y SL+
Sbjct: 686 IIEQGSHDELL-DRNGFYASLI 706
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 208 bits (531), Expect = 3e-56
Identities = 119/420 (28%), Positives = 202/420 (48%), Gaps = 24/420 (5%)
Query: 723 AFCFLGLAVFTLVINIIQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAIC 782
A L A+F ++ +++ Y A++G+ L + R +L + +F++ S G I
Sbjct: 197 AIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEK--RSVGEII 254
Query: 783 SRLAKDANVVRSLV-GDRTALLVQTISAVTIAFTMGLFIAWRLALVMIAVQPLVIICFYA 841
SR+ + +R + G L++ + A+ M L +W+L L+++A PL ++
Sbjct: 255 SRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFL-YSWKLTLIVLAAIPLNVLITLI 312
Query: 842 RRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEK--AQQGPRRESI 899
+ LL+ + K I+ AE E + + T+ A +++ R + A+Q
Sbjct: 313 FQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKT 372
Query: 900 RQSWYAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAG 959
+ A I L + L W+G L+ +G ++ L M+ G I+
Sbjct: 373 EKL--ALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNML---AGYFISPIT 427
Query: 960 SMT---TDIAKGSDAVGSVFAVMDRYTKIEPEDPEGHQPE---RITGNIELQNVHFAYPA 1013
++ TD + A+ + ++D PE ++ G IE +NV F Y
Sbjct: 428 RLSQLWTDFQQAKVALERLGDILDT----PPEQEGDKTLIHLPKLQGEIEFENVSFRYGP 483
Query: 1014 RPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHL 1073
D + E S++I G+ A+VG+SGSGKST++ L+ Y P +G + +D D+ L
Sbjct: 484 D-DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDL 542
Query: 1074 RSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133
SLRR + V Q+P LF+G+IRENIA G + + EI+EAA+ A AH+FI L GYDT
Sbjct: 543 ASLRRQVGYVLQDPFLFSGSIRENIALGNPE-ATDEEIIEAAQLAGAHEFIENLPMGYDT 601
|
Length = 709 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 201 bits (514), Expect = 6e-55
Identities = 80/214 (37%), Positives = 139/214 (64%), Gaps = 2/214 (0%)
Query: 384 LTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVS 443
T+PAG+ +ALVG SG+GK++++ L F P G + ++G+ + +L + R + V
Sbjct: 371 FTLPAGQRIALVGPSGAGKTSLLNALLGF-LPYQGSLKINGIELRELDPESWRKHLSWVG 429
Query: 444 QEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGG 503
Q P L ++++N+L G DAS E++ +A + + F+ LPQ DT +G++ +S G
Sbjct: 430 QNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVG 489
Query: 504 QKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN 563
Q QR+A+ARA+++ ++LLLDE T++LD+ SE++V +AL+ A +TT+++ H+L +
Sbjct: 490 QAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQ 549
Query: 564 ADVIAVVQDGQVMETGSHDELIQAESGLYTSLVR 597
D I V+QDGQ+++ G + EL QA GL+ +L+
Sbjct: 550 WDQIWVMQDGQIVQQGDYAELSQAG-GLFATLLA 582
|
Length = 588 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 198 bits (505), Expect = 8e-54
Identities = 105/278 (37%), Positives = 165/278 (59%), Gaps = 16/278 (5%)
Query: 326 EAMAAGERIMEMIKRVPK---IDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDF 382
+A+ AGER+ E++ + D ++ G ++ V FAY R ++++ ++
Sbjct: 310 QAVVAGERVFELMDGPRQQYGNDDRPLQS-------GRIDIDNVSFAY--RDDNLVLQNI 360
Query: 383 CLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLV 442
L++P+ VALVG +GSGKST+ +LL +Y GEI LDG + L LR + +V
Sbjct: 361 NLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMV 420
Query: 443 SQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSG 502
Q+P + A + N+ G+ D S E+V +A + R LP T +GE+G +S
Sbjct: 421 QQDPVVLADTFLANVTLGR-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSV 479
Query: 503 GQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTT-IIIAHRLSTI 561
GQKQ +A+AR +++ P+IL+LDEAT+ +DS +E+ +Q+AL AV TT ++IAHRLSTI
Sbjct: 480 GQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQAL-AAVREHTTLVVIAHRLSTI 538
Query: 562 RNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQ 599
AD I V+ GQ +E G+H +L+ A+ G Y + +LQ
Sbjct: 539 VEADTILVLHRGQAVEQGTHQQLLAAQ-GRYWQMYQLQ 575
|
Length = 592 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 187 bits (476), Expect = 2e-50
Identities = 100/306 (32%), Positives = 157/306 (51%), Gaps = 12/306 (3%)
Query: 286 GSRMVMYHGAQGGTVFAVGASIAVGGLALG---AGLPNLKYFSEAMAAGERIMEMIKRVP 342
G+ + + G + A SI VG AL + K FS A A +R+ E++ P
Sbjct: 246 GAYLAIDGEITPGMMIA--GSILVGR-ALAPIDGAIGGWKQFSGARQAYKRLNELLANYP 302
Query: 343 KIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGK 402
D +M L G + + V P + + ++ AG+ +A++G SGSGK
Sbjct: 303 SRD-PAMP---LPEPEGHLSVENVTIVPPG-GKKPTLRGISFSLQAGEALAIIGPSGSGK 357
Query: 403 STVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKE 462
ST+ L+ + P G + LDG + + + +G + Q+ LF ++ ENI E
Sbjct: 358 STLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGE 417
Query: 463 DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILL 522
+A E++IEAAK + H I +LP YDT +G G +SGGQ+QRIA+ARA+ P++++
Sbjct: 418 NADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVV 477
Query: 523 LDEATSALDSESERVVQEALDKA-VVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSH 581
LDE S LD E E+ + A+ G T ++I HR S + D I V+QDG++ G
Sbjct: 478 LDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGER 537
Query: 582 DELIQA 587
DE++
Sbjct: 538 DEVLAK 543
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 193 bits (491), Expect = 7e-50
Identities = 178/680 (26%), Positives = 312/680 (45%), Gaps = 134/680 (19%)
Query: 21 FRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNIN 80
+R IF + V + + + G + P+ L +K+++ + +N+ N N
Sbjct: 817 YREIFSYKKDVTIIALSILVAGGL-----YPVFALLYAKYVSTLFDFANL-----EANSN 866
Query: 81 KNTVHLLYLALGSWVACFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFD-------- 132
K ++++L +A+ +++ L+ Y GE+ M+ R + +L Q++ +FD
Sbjct: 867 KYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGL 926
Query: 133 --LHVTSTAEVI-TSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLWRLAIVGF 189
H+ ++ T + N+ ++ I L + VM+ F+ C +VA A++
Sbjct: 927 LSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMS---FYFCPIVA-------AVLTG 976
Query: 190 PFVVLLVIPGLMYGRTLMSLARKM-RDEYNKAGTI----------------AEQAISSIR 232
+ + + + + R ++ + + + E N+ GT+ ++A ++
Sbjct: 977 TYFIFMRVFAI---RARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMN 1033
Query: 233 TVYAFVGESKTINEFSSALQGSVQLGLKQGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVM 291
TV + E N A+ S + ++ L + G S I SF ++GS ++
Sbjct: 1034 TVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLI- 1092
Query: 292 YHGAQGGTVF------AVGASIAVGGLALGAGLPNLKYFSE-AMAAGERIMEMIKRVPKI 344
+ GT+ ++ + G A L +LK SE A + E+ +I R I
Sbjct: 1093 ----RRGTILVDDFMKSLFTFLFTGSYA--GKLMSLKGDSENAKLSFEKYYPLIIRKSNI 1146
Query: 345 DSDSMEGEILEN---VLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSG 401
D G ++N + G++E V F Y SRP I+KD + + KT A+VG +GSG
Sbjct: 1147 DVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSG 1206
Query: 402 KSTVIALLQRFYAPLGGEIIL------DGVSIDKLQLKWLRSQMGL-------VSQEPA- 447
KSTV++LL RFY I+ + ++ ++ +G+ +++E
Sbjct: 1207 KSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGS 1266
Query: 448 ------------------------------LFATSIKENILF----------GKEDASME 467
LF+ +E +LF GKEDA+ E
Sbjct: 1267 GEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATRE 1326
Query: 468 EVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEAT 527
+V A K + FI LP +YDT VG G +SGGQKQRIAIARA+++ P+ILLLDEAT
Sbjct: 1327 DVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEAT 1386
Query: 528 SALDSESERVVQEAL----DKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQ-----VMET 578
S+LDS SE+++++ + DKA +T I IAHR+++I+ +D I V + V
Sbjct: 1387 SSLDSNSEKLIEKTIVDIKDKA--DKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAH 1444
Query: 579 GSHDELIQAESGLYTSLVRL 598
G+H+EL+ + G+Y V+L
Sbjct: 1445 GTHEELLSVQDGVYKKYVKL 1464
|
Length = 1466 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 175 bits (446), Expect = 1e-49
Identities = 70/132 (53%), Positives = 85/132 (64%), Gaps = 2/132 (1%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
+E +NV F YP + S+ I AG++ ALVG SGSGKST++ LI RFYD G +
Sbjct: 1 VEFKNVTFRYPGDGP-PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI 59
Query: 1062 KIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAH 1121
ID D+R Y L SLRR I LVSQ+ LF T+ ENIAYG E E+ EAA+AANAH
Sbjct: 60 LIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATRE-EVEEAARAANAH 118
Query: 1122 DFIAGLNEGYDT 1133
+FI L EGYDT
Sbjct: 119 EFIMELPEGYDT 130
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 185 bits (471), Expect = 2e-49
Identities = 109/327 (33%), Positives = 168/327 (51%), Gaps = 20/327 (6%)
Query: 286 GSRMVMYHGAQGGTVFAVGASIAVGGLALG---AGLPNLKYFSEAMAAGERIMEMIKRVP 342
G+ +V+ G + A SI G AL + N K F A + +R+ E++ +P
Sbjct: 264 GAWLVIKGEITPGMMIA--GSILSG-RALAPIDLAIANWKQFVAARQSYKRLNELLAELP 320
Query: 343 KIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGK 402
+ E L G + + + A P + + I+ K + AG+ + ++G SGSGK
Sbjct: 321 ----AAAERMPLPAPQGALSVERLTAAPPGQKKPIL-KGISFALQAGEALGIIGPSGSGK 375
Query: 403 STVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM----GLVSQEPALFATSIKENIL 458
ST+ LL + P G + LDG + + W R Q+ G + Q+ LF +I ENI
Sbjct: 376 STLARLLVGIWPPTSGSVRLDGADLRQ----WDREQLGRHIGYLPQDVELFDGTIAENIA 431
Query: 459 FGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAP 518
E+A E+VIEAA+ + H I +LPQ YDT++GE G +SGGQ+QRIA+ARA+ P
Sbjct: 432 RFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDP 491
Query: 519 RILLLDEATSALDSESERVVQEALDKA-VVGRTTIIIAHRLSTIRNADVIAVVQDGQVME 577
+++LDE S LDSE E + A+ A G T ++IAHR S + + D I V+QDG++
Sbjct: 492 FLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAA 551
Query: 578 TGSHDELIQAESGLYTSLVRLQTTTPD 604
G +E++ + T
Sbjct: 552 FGPREEVLAKVLRPPPRQAKPGTVVAP 578
|
Length = 580 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 178 bits (453), Expect = 2e-47
Identities = 99/303 (32%), Positives = 152/303 (50%), Gaps = 25/303 (8%)
Query: 263 LAKGLAIGSNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAV------GASIAVGGLALGA 316
LA GLA V +W+ G V G AV A A L A
Sbjct: 246 LAAGLA-----VLGALWA-----GGPAVA-DGRLAPVTLAVLVLLPLAAFEAFAALPAAA 294
Query: 317 GLPNLKYFSEAMAAGERIMEMIK-RVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPE 375
+ AA ERI+E++ P + + + +E + + YP P
Sbjct: 295 Q-----QLTRVRAAAERIVEVLDAAGPVAEGSAPAAGAVGLGKPTLELRDLSAGYPGAPP 349
Query: 376 SIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWL 435
+ L +P G+ VA++G SGSGKST++A L PL GE+ LDGV + L +
Sbjct: 350 --VLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEV 407
Query: 436 RSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGE 495
R ++ + +Q+ LF T+++EN+ + DA+ EE+ A + +++R LP DT +GE
Sbjct: 408 RRRVSVCAQDAHLFDTTVRENLRLARPDATDEELWAALERVGLADWLRALPDGLDTVLGE 467
Query: 496 RGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIA 555
G ++SGG++QR+A+ARA++ ILLLDE T LD+E+ + E L A+ GRT ++I
Sbjct: 468 GGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAALSGRTVVLIT 527
Query: 556 HRL 558
H L
Sbjct: 528 HHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 177 bits (452), Expect = 6e-47
Identities = 126/428 (29%), Positives = 202/428 (47%), Gaps = 40/428 (9%)
Query: 723 AFCFLGLAVFTLVINIIQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAIC 782
+GL + + + I Y +++ + +R R+ ++ V +FD+ S+G +
Sbjct: 68 PLVVIGLMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDK--QSTGTLL 125
Query: 783 SRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWRLALVMIAVQPLVIICFYAR 842
SR+ D+ V S +V+ +++ F M + +W+L+L++I + P+V A
Sbjct: 126 SRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIVIAPIV---SIAI 182
Query: 843 RVLLKSMSNKAIKAQAESSKLAAEAVSNL---RTITAFSSQHRILKMLEKAQQGPRRESI 899
RV+ K N + Q ++ A L + + F Q K +K R++ +
Sbjct: 183 RVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGM 242
Query: 900 RQSWYAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAG 959
+ + I Q +AS L Y +S F + M ++ G +
Sbjct: 243 KMVSASSISDPIIQLIASLA----------LAFVLYAAS---FPSVMDTLTAGTITVVFS 289
Query: 960 SM-------------TTDIAKGSDAVGSVFAVMDRYTKIEPEDPEG-HQPERITGNIELQ 1005
SM +G A ++FA++D +E E EG ER G+IE +
Sbjct: 290 SMIALMRPLKSLTNVNAQFQRGMAACQTLFAILD----LEQEKDEGKRVIERAKGDIEFR 345
Query: 1006 NVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDD 1065
NV F YP + +V + KI AGK+ ALVG+SGSGKSTI L+ RFYD +G++ +D
Sbjct: 346 NVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDG 404
Query: 1066 RDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIA 1125
D+R Y L SLR +ALVSQ LF TI NIAY +++ +I EAA+ A A DFI
Sbjct: 405 HDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFIN 464
Query: 1126 GLNEGYDT 1133
++ G DT
Sbjct: 465 KMDNGLDT 472
|
Length = 582 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 166 bits (423), Expect = 1e-46
Identities = 68/135 (50%), Positives = 82/135 (60%), Gaps = 9/135 (6%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
IE +NV FAY P + + S I AGK A+VG SGSGKSTI+ L+ RFYD G +
Sbjct: 1 IEFENVTFAYD--PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI 58
Query: 1062 KIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYG---ASDEIDESEIVEAAKAA 1118
ID +DIR L SLRR I +V Q+ LF TI NI YG A+DE E++EAAKAA
Sbjct: 59 LIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDE----EVIEAAKAA 114
Query: 1119 NAHDFIAGLNEGYDT 1133
HD I +GYDT
Sbjct: 115 QIHDKIMRFPDGYDT 129
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 182 bits (463), Expect = 2e-46
Identities = 192/786 (24%), Positives = 350/786 (44%), Gaps = 66/786 (8%)
Query: 368 FAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSI 427
F++ S+ D L IP G VA+VGG+G GK+++I+ A LG + S+
Sbjct: 622 FSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLIS------AMLGELSHAETSSV 675
Query: 428 DKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQ 487
+R + V Q +F +++ENILFG D E A + + + LP
Sbjct: 676 V------IRGSVAYVPQVSWIFNATVRENILFG-SDFESERYWRAIDVTALQHDLDLLPG 728
Query: 488 QYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSE-SERVVQEALDKAV 546
+ T++GERGV +SGGQKQR+++ARA+ I + D+ SALD+ + +V + +
Sbjct: 729 RDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDEL 788
Query: 547 VGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQTTTPDDN 606
G+T +++ ++L + D I +V +G + E G+ EL ++ L+ L+
Sbjct: 789 KGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKS-GSLFKKLME--------- 838
Query: 607 NNATMHSLASKSSNMDMNSTSSRRLSIVSLSSSANSFAQG-RGASQSNEEDIKKLPVPSF 665
N M + ++N + ++I + S QG RG S +++ ++ + S+
Sbjct: 839 NAGKMDATQEVNTNDENILKLGPTVTIDVSERNLGSTKQGKRGRSVLVKQEERETGIISW 898
Query: 666 RRLVALNAPEWKQATLGC-VGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAF 724
L+ + +A G V L + S + TD K + +
Sbjct: 899 NVLM-----RYNKAVGGLWVVMILLVCYLTTEVLRVSSSTWLSIWTDQSTPKSYSPGFYI 953
Query: 725 CFLGLAVFTLV-INIIQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICS 783
L F V + + H KR+ + ML+ IL + +F N +G + +
Sbjct: 954 VVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHT--NPTGRVIN 1011
Query: 784 RLAKDANV----VRSLVGDRTALLVQTISAVTIAFTMGLFIAWRLALVMIAVQPLVIICF 839
R +KD V +L+ L Q +S + T+ W A+ PL+I+ F
Sbjct: 1012 RFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTISLW-------AIMPLLIL-F 1063
Query: 840 YARRVLLKSMSNKAIKAQAESSK----LAAEAVSNLRTITAFSSQHRILKMLEKAQQGPR 895
YA + +S S + + + + EA++ L +I A+ + R+ K+ K+
Sbjct: 1064 YAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNI 1123
Query: 896 RESIRQSWYAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFM--ILVSTGR 953
R ++ + ++L L + ++ +G ++A F + M +L T
Sbjct: 1124 RFTLANTSSNRWLTIRLETLGGVMIWLTATFA--VLRNGNAENQAGFASTMGLLLSYTLN 1181
Query: 954 VIADAGSMTTDIAKGSDAVGSVFAVMDRYTKIEPEDP---EGHQPER---ITGNIELQNV 1007
+ + +K +++ SV V Y + E E ++P G+I+ ++V
Sbjct: 1182 ITTLLSGVLRQASKAENSLNSVERV-GNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDV 1240
Query: 1008 HFAY-PARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDR 1066
H Y P P V+ G S + + +VG++G+GKS+++ + R + KG + IDD
Sbjct: 1241 HLRYRPGLPPVL--HGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDC 1298
Query: 1067 DIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAG 1126
D+ + L LRR ++++ Q P LF+GT+R NI E +++++ EA + A+ D I
Sbjct: 1299 DVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNI--DPFSEHNDADLWEALERAHIKDVIDR 1356
Query: 1127 LNEGYD 1132
G D
Sbjct: 1357 NPFGLD 1362
|
Length = 1495 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 180 bits (458), Expect = 8e-46
Identities = 199/819 (24%), Positives = 363/819 (44%), Gaps = 117/819 (14%)
Query: 354 LENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVI-ALLQRF 412
LE L + K F++ S+ E + L +P G VA+VG +G GK+++I A+L
Sbjct: 608 LEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGEL 667
Query: 413 YAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKE-DASMEEVIE 471
+++ R + V Q +F ++++NILFG D E
Sbjct: 668 PPRSDASVVI-------------RGTVAYVPQVSWIFNATVRDNILFGSPFDPERYE--R 712
Query: 472 AAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALD 531
A + + + LP T++GERGV +SGGQKQR+++ARA+ + + D+ SALD
Sbjct: 713 AIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALD 772
Query: 532 SESER-VVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESG 590
+ R V + + + G+T +++ ++L + D I +V +G + E G+++EL
Sbjct: 773 AHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELS-NNGP 831
Query: 591 LYTSLVRLQTTTPDDNNNATMHSLASKSSNMDMNSTSSRRLSIVSLSSSANSFAQGRGAS 650
L+ L+ N M ++ + + TSS+ ++ + +AN+ + +S
Sbjct: 832 LFQKLME---------NAGKMEEYVEENGEEEDDQTSSKPVA----NGNANNLKK-DSSS 877
Query: 651 QSNEEDIKKLPVPSFRR---LVALNAPEWKQATLG--CVGATLFGAVQPIYAFAMGSMIS 705
+ ++ K + + R +V+ E + LG V LF F + S
Sbjct: 878 KKKSKEGKSVLIKQEERETGVVSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTW 937
Query: 706 VYFLTDHDEIK-KKTSIYAFCFLGLAVFTLVINIIQHYNFAYMGEHLTKRIRERMLSKIL 764
+ TD K Y + L+ +++ ++ Y + KR+ + ML IL
Sbjct: 938 LSEWTDQGTPKTHGPLFYNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSIL 997
Query: 765 TFEVGWFDQDENSSGAICSRLAKD--------ANVVRSLVGDRTALLVQTISAVTIAFTM 816
+ +F N G I +R AKD A V +G LL T + I T+
Sbjct: 998 RAPMSFFHT--NPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLL-STFVLIGIVSTI 1054
Query: 817 GLFIAWRLALVMIAVQPLVIICFY---------ARRV-LLKSMSNKAIKAQAESSKLAAE 866
L W A+ PL+++ FY AR V L S++ + AQ E
Sbjct: 1055 SL---W-------AIMPLLVL-FYGAYLYYQSTAREVKRLDSITRSPVYAQF------GE 1097
Query: 867 AVSNLRTITAFSSQHRILKMLEKAQQ-----------GPRRESIRQSWYAGIGLAFSQSL 915
A++ L TI A+ + R+ ++ ++ R +IR G+ + + S
Sbjct: 1098 ALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSNRWLAIRLETLGGLMIWLTASF 1157
Query: 916 ASCTWALDFWYGGRLIADGYISSKALFETFM-ILVSTGRVIADAGSMTTDIAKGSDAVGS 974
A ++ +G ++A F + M +L+S I +T + S A S
Sbjct: 1158 A-------------VMQNGRAENQAAFASTMGLLLSYALNIT--SLLTAVLRLASLAENS 1202
Query: 975 VFAV--MDRYTKIEPEDP---EGHQPER---ITGNIELQNVHFAYPARPDVM-IFEGFSI 1025
+ AV + Y + E P E ++P +G+I+ ++V Y RP++ + G S
Sbjct: 1203 LNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRY--RPELPPVLHGLSF 1260
Query: 1026 KIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQ 1085
+I + +VG++G+GKS+++ + R + +G + ID DI + L LR+ + ++ Q
Sbjct: 1261 EISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQ 1320
Query: 1086 EPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFI 1124
P LF+GT+R N+ +E +++++ E+ + A+ D I
Sbjct: 1321 APVLFSGTVRFNL--DPFNEHNDADLWESLERAHLKDVI 1357
|
Length = 1622 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 160 bits (407), Expect = 2e-44
Identities = 64/139 (46%), Positives = 89/139 (64%), Gaps = 1/139 (0%)
Query: 995 PERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFY 1054
P+ + G ++ QNV FAYP RPD ++ + S + G+ TALVG SGSGKST++ L+E FY
Sbjct: 5 PDHLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFY 64
Query: 1055 DPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEA 1114
P G V +D + I Y + L ++LV QEP LFA ++++NIAYG E + EA
Sbjct: 65 QPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFE-CVKEA 123
Query: 1115 AKAANAHDFIAGLNEGYDT 1133
A+ A+AH FI+ L GYDT
Sbjct: 124 AQKAHAHSFISELASGYDT 142
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 159 bits (405), Expect = 3e-44
Identities = 61/134 (45%), Positives = 84/134 (62%), Gaps = 3/134 (2%)
Query: 1000 GNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKG 1059
G IE +NV+F+Y + + + I+ G++ A+VG +G+GK+T+I L+ RFYDP KG
Sbjct: 1 GEIEFENVNFSY--DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKG 58
Query: 1060 DVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAAN 1119
+ ID DIR +SLR I +V Q+ LF+GTI ENI G + E++EAAK A
Sbjct: 59 QILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLG-RPNATDEEVIEAAKEAG 117
Query: 1120 AHDFIAGLNEGYDT 1133
AHDFI L GYDT
Sbjct: 118 AHDFIMKLPNGYDT 131
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 169 bits (431), Expect = 2e-43
Identities = 100/370 (27%), Positives = 179/370 (48%), Gaps = 22/370 (5%)
Query: 772 DQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLF------IAWRLA 825
+ S G+ ++L ++ VR T + + + F + LF I L
Sbjct: 236 EARPASVGSFANQL-REFESVRDFFTSATLT-----ALIDLPFAL-LFLLVIAIIGGPLV 288
Query: 826 LVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILK 885
V + PL+++ + L ++ ++++ A+ + + E++S L TI A +++ R +
Sbjct: 289 WVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQR 348
Query: 886 MLEKAQQGPRRESIRQSWYAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETF 945
E+ R ++ + + + F+Q + G LI+DG ++ L
Sbjct: 349 RWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACV 408
Query: 946 MILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRYTKIEPEDPEGHQP---ERITGNI 1002
M+ +GR +A G + + + A ++ ++ D ++ E PEG + R+ G I
Sbjct: 409 ML---SGRALAPLGQLAGLLTRYQQAKTALQSL-DELMQLPVERPEGTRFLHRPRLQGEI 464
Query: 1003 ELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVK 1062
E +NV FAYP + + + S+ I G+ A++G+ GSGKST++ L+ Y P +G V
Sbjct: 465 EFRNVSFAYPGQETPAL-DNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVL 523
Query: 1063 IDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHD 1122
+D DIR LRR+I V Q+P LF GT+R+NIA GA D+ EI+ AA+ A +
Sbjct: 524 LDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAP-YADDEEILRAAELAGVTE 582
Query: 1123 FIAGLNEGYD 1132
F+ +G D
Sbjct: 583 FVRRHPDGLD 592
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 153 bits (389), Expect = 5e-42
Identities = 78/223 (34%), Positives = 119/223 (53%), Gaps = 26/223 (11%)
Query: 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFY-----APLGGEIILDGVSIDKLQL 432
KD L IP G+ AL+G SG GKST++ LL R AP GE++LDG I L +
Sbjct: 15 ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDV 74
Query: 433 K--WLRSQMGLVSQEPALFATSIKENILFG------KEDASMEEVIEAA--KASNAHNFI 482
LR ++G+V Q+P F SI +N+ +G K ++E +E A KA
Sbjct: 75 DVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKA------- 127
Query: 483 RQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEAL 542
L + ++ G +SGGQ+QR+ +ARA+ P +LLLDE TSALD S ++E +
Sbjct: 128 -ALWDEVKDRLHALG--LSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELI 184
Query: 543 DKAVVGRTTIIIAHRLS-TIRNADVIAVVQDGQVMETGSHDEL 584
+ T +I+ H + R AD A + +G+++E G +++
Sbjct: 185 AELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 150 bits (380), Expect = 1e-41
Identities = 71/211 (33%), Positives = 103/211 (48%), Gaps = 44/211 (20%)
Query: 366 VQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGV 425
V F YP ++ ++ +I G+++A++G SGSGKST+ L+ P G + LDG
Sbjct: 6 VSFRYPGAEPPVL-RNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGA 64
Query: 426 SIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQL 485
I + L +G + Q+ LF+ SI ENIL
Sbjct: 65 DISQWDPNELGDHVGYLPQDDELFSGSIAENIL--------------------------- 97
Query: 486 PQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKA 545
SGGQ+QR+ +ARA+ PRIL+LDE S LD E ER + +A+
Sbjct: 98 ---------------SGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAAL 142
Query: 546 -VVGRTTIIIAHRLSTIRNADVIAVVQDGQV 575
G T I+IAHR T+ +AD I V++DG+V
Sbjct: 143 KAAGATRIVIAHRPETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 148 bits (377), Expect = 1e-40
Identities = 82/223 (36%), Positives = 115/223 (51%), Gaps = 22/223 (9%)
Query: 362 EFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEII 421
E K + F+YP D LTI G+ V +VG +GSGKST++ LL P GE++
Sbjct: 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVL 59
Query: 422 LDGVSIDKLQLKWLRSQMGLVSQEPA--LFATSIKENILFGKEDASMEE------VIEAA 473
+DG + KL LK LR ++GLV Q P F +++E + FG E+ + E V EA
Sbjct: 60 VDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEAL 119
Query: 474 KASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSE 533
+ + P +SGGQKQR+AIA + P ILLLDE T+ LD
Sbjct: 120 ELVGLEGLRDRSPF-----------TLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPA 168
Query: 534 SERVVQEALDK-AVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQ 574
R + E L K G+T II+ H L + AD + V++DG+
Sbjct: 169 GRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 147 bits (372), Expect = 2e-40
Identities = 67/219 (30%), Positives = 111/219 (50%), Gaps = 41/219 (18%)
Query: 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI 420
+ V F+YP + E + K+ L + G+ +AL+G SGSGKST++ LL P GEI
Sbjct: 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI 59
Query: 421 ILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHN 480
LDGV + L+ K L S + +++Q P LF T+++ N+
Sbjct: 60 TLDGVPVSDLE-KALSSLISVLNQRPYLFDTTLRNNL----------------------- 95
Query: 481 FIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQE 540
G + SGG++QR+A+AR +++ I+LLDE T LD +ER +
Sbjct: 96 ----------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLS 139
Query: 541 ALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETG 579
+ + + +T I I H L+ I + D I +++G+++ G
Sbjct: 140 LIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 147 bits (373), Expect = 3e-40
Identities = 75/224 (33%), Positives = 116/224 (51%), Gaps = 30/224 (13%)
Query: 361 VEFKCVQFAYPSRPESI--IFKDFCLTIPAGKTVALVGGSGSGKSTVI-ALLQRFYAPLG 417
+ + F + S + KD L +P G+ VA+VG GSGKS+++ ALL
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALL-------- 52
Query: 418 GEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKE-DASM-EEVIEAAKA 475
GE+ S+ + + VSQEP + +I+ENILFGK D E+VI+A
Sbjct: 53 GELEKLSGSV------SVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACAL 106
Query: 476 SNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSES- 534
+ LP T++GE+G+ +SGGQKQRI++ARA+ I LLD+ SA+D+
Sbjct: 107 EPD---LEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVG 163
Query: 535 ----ERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQ 574
E + L +T I++ H+L + +AD I V+ +G+
Sbjct: 164 RHIFENCILGLLLN---NKTRILVTHQLQLLPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 161 bits (409), Expect = 5e-40
Identities = 186/805 (23%), Positives = 343/805 (42%), Gaps = 107/805 (13%)
Query: 384 LTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVS 443
+IP G VA+VG G GKS++++ L + G + + G + V
Sbjct: 659 FSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-------------SVAYVP 705
Query: 444 QEPALFATSIKENILFGK--EDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMS 501
Q+ + S++ENILFGK + ++V+EA + LP T++GE+GV +S
Sbjct: 706 QQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPD---LEILPSGDRTEIGEKGVNLS 762
Query: 502 GGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV------VGRTTIIIA 555
GGQKQR+++ARA+ I L D+ SA+D+ V + + + +T I++
Sbjct: 763 GGQKQRVSLARAVYSNADIYLFDDPLSAVDAH---VGKHIFEHVIGPEGVLKNKTRILVT 819
Query: 556 HRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQTTTPDDNNNATMHSLA 615
H +S + DVI V+ G++ E GS+ EL+Q G + +R T PD+ S
Sbjct: 820 HGISYLPQVDVIIVMSGGKISEMGSYQELLQ-RDGAFAEFLR--TYAPDEQQGHLEDSWT 876
Query: 616 SKSSNMDMNSTSSRRLSIVSLSSSANSFAQGRGASQSNEEDIKKLPVPSFRRLVALNAPE 675
+ S + +V+ + AS S+ D + S A E
Sbjct: 877 ALVSGEGKEAKLIENGMLVT-DVVGKQLQRQLSASSSDSGDQSRHHGSSAELQKAEAKEE 935
Query: 676 -WK-----QATLGCVGAT----------LFGAVQPIYAF------AMGSMISVYFLTD-- 711
WK +A G V + LF I+ F A+ S + TD
Sbjct: 936 TWKLMEADKAQTGQVELSVYWDYMKAIGLFITFLSIFLFVCNHVSALASNYWLSLWTDDP 995
Query: 712 -----HDEIKKKTSIYAFCFL--GLAVFTLVINIIQHYNFAYMGEHLTKRIRERMLSKIL 764
+ + S+Y + G AVF + + + G ++ + + +L L
Sbjct: 996 MVNGTQNNTSLRLSVYGALGILQGFAVFGYSMAV------SIGGIQASRVLHQDLLHNKL 1049
Query: 765 TFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWRL 824
+ +F++ SG + +R +K+ + V S++ + + ++ V I + + +A +
Sbjct: 1050 RSPMSFFER--TPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNV-IGALIVILLATPI 1106
Query: 825 ALVMIAVQPLVIICFYARRVLLKSMSN-KAIKAQAESSKLA--AEAVSNLRTITAFSSQH 881
A V+I PL ++ F+ +R + S K +++ + S + E + + I AF Q
Sbjct: 1107 AAVIIP--PLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQE 1164
Query: 882 RILKMLE---KAQQGPRRESIRQSWYAGIGLAFSQSLASCT--WALDFWYGGRLIADGYI 936
R + + Q SI + + + L + +C +A F R +
Sbjct: 1165 RFIHQSDLKVDENQKAYYPSIVANRWLAVRLEC---VGNCIVLFAALFAVISRHSLSAGL 1221
Query: 937 SSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRYTKIEPEDP---EGH 993
++ + + ++ + M T+I AV + Y++ E E P +
Sbjct: 1222 VGLSVSYSLQVTFYLNWLVRMSSEMETNIV----AVERL----KEYSETEKEAPWQIQET 1273
Query: 994 QPERI---TGNIELQNVHFAYPARPDV-MIFEGFSIKIEAGKSTALVGQSGSGKSTIIGL 1049
P G +E +N Y R D+ ++ ++ I G+ +VG++G+GKS++
Sbjct: 1274 APPSGWPPRGRVEFRNYCLRY--REDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLG 1331
Query: 1050 IERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENI-AYGA-SDEID 1107
+ R + +G++ ID +I L LR I ++ Q+P LF+G++R N+ + SDE
Sbjct: 1332 LFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDE-- 1389
Query: 1108 ESEIVEAAKAANAHDFIAGLNEGYD 1132
E+ A + A+ F++ L + D
Sbjct: 1390 --EVWWALELAHLKTFVSALPDKLD 1412
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 144 bits (366), Expect = 7e-39
Identities = 80/243 (32%), Positives = 119/243 (48%), Gaps = 25/243 (10%)
Query: 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI 420
+E + + F YP R KD L I G+ V L+G +GSGKST++ LL P GE+
Sbjct: 4 IEAENLSFRYPGRKA--ALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV 61
Query: 421 ILDGVSIDKLQLKW-LRSQMGLVSQEPA--LFATSIKENILFG------KEDASMEEVIE 471
++DG+ + LR ++GLV Q P LF ++++ + FG + E V E
Sbjct: 62 LVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAE 121
Query: 472 AAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALD 531
A + + + P +SGGQKQR+AIA + P ILLLDE T+ LD
Sbjct: 122 ALELVGLEELLDRPPFN-----------LSGGQKQRVAIAGVLAMGPEILLLDEPTAGLD 170
Query: 532 SESERVVQEALDK--AVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQAE 588
+ R + E L K G+T II+ H L + AD + V+ DG+++ G E+
Sbjct: 171 PKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA 230
Query: 589 SGL 591
L
Sbjct: 231 ELL 233
|
Length = 235 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 1e-38
Identities = 75/225 (33%), Positives = 127/225 (56%), Gaps = 26/225 (11%)
Query: 359 GEVEFK--CVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPL 416
GE+E + V++A P P + K+ + AG+ + +VG +G+GKST+I L RF
Sbjct: 5 GEIEVENLSVRYA-PDLPP--VLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAE 61
Query: 417 GGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENI-LFGKEDASMEEVIEAAKA 475
G+I +DG+ I + L+ LRS + ++ Q+P LF+ +I+ N+ F + EE+ A +
Sbjct: 62 EGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSD--EEIYGALR- 118
Query: 476 SNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESE 535
V E G+ +S GQ+Q + +ARA++K PR+L+LDEAT+++D ++
Sbjct: 119 -----------------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATD 161
Query: 536 RVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGS 580
++Q+ + + T + IAHRL TI + D I V+ G+V E
Sbjct: 162 ALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 140 bits (357), Expect = 2e-38
Identities = 50/97 (51%), Positives = 68/97 (70%), Gaps = 1/97 (1%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
IE +NV F+YP RP + + S+ I+ G+ A+VG SGSGKST++ L+ R YDP G++
Sbjct: 1 IEFKNVSFSYPGRP-KPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI 59
Query: 1062 KIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENI 1098
ID D+R L SLR++IA V Q+P LF+GTIRENI
Sbjct: 60 LIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI 96
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 142 bits (361), Expect = 4e-38
Identities = 75/244 (30%), Positives = 126/244 (51%), Gaps = 36/244 (14%)
Query: 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI 420
+E + + ++ R + K L + G+ +A++G SGSGKST++ L+ P GE+
Sbjct: 1 IELRGLTKSFGGRT---VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEV 57
Query: 421 ILDGVSIDKL---QLKWLRSQMGLVSQEPALF-ATSIKENILF-----GKEDASMEEVIE 471
++DG I L +L LR +MG++ Q ALF + ++ EN+ F +
Sbjct: 58 LIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEE----- 112
Query: 472 AAKASNAHNFIRQLPQQYDTQVGERGV------QMSGGQKQRIAIARAIIKAPRILLLDE 525
IR++ + VG RG ++SGG K+R+A+ARA+ P +LL DE
Sbjct: 113 ----------IREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDE 162
Query: 526 ATSALDSESERVVQEALD--KAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHD 582
T+ LD + V+ + + K +G T+I++ H L T AD IAV+ DG+++ G+ +
Sbjct: 163 PTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPE 222
Query: 583 ELIQ 586
EL
Sbjct: 223 ELRA 226
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 143 bits (364), Expect = 4e-38
Identities = 64/270 (23%), Positives = 131/270 (48%), Gaps = 3/270 (1%)
Query: 681 LGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINIIQ 740
+ + L GA ++ +G + + + + A + + V ++
Sbjct: 3 IAILLLILAGATALVFPLLLGRFLDSLIDGN-GDERSSLISLAILLIAVGVLQGLLLQGS 61
Query: 741 HYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRT 800
Y +G+ + KR+ +L +IL + +FD NS G + SRL D + +R +GD+
Sbjct: 62 FYLGERLGQRIRKRLFRALLRQILGLPMSFFD--TNSVGELTSRLTNDVSKIRDGLGDKL 119
Query: 801 ALLVQTISAVTIAFTMGLFIAWRLALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAES 860
L Q+++ V F + + W+L LV++A+ PL+I+ L+ ++ K KA A++
Sbjct: 120 GLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKAYAKA 179
Query: 861 SKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSWYAGIGLAFSQSLASCTW 920
+A E++S +RT+ AF + L+ +KA + + I+++ AG+ +Q ++ ++
Sbjct: 180 GSVAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAITAGLSFGITQLISYLSY 239
Query: 921 ALDFWYGGRLIADGYISSKALFETFMILVS 950
AL W+G L+ G +S +F + +
Sbjct: 240 ALALWFGAYLVISGGLSVGTVFAFLSLGLQ 269
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 151 bits (383), Expect = 1e-37
Identities = 108/430 (25%), Positives = 177/430 (41%), Gaps = 52/430 (12%)
Query: 730 AVFTLVINIIQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDA 789
A+ V+ +Q Y + L + R L IL V +F Q +G I SR+ +
Sbjct: 204 ALLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFAQ--RHAGDIASRVQLND 261
Query: 790 NVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWRLALVMIAVQPLVIICFYARRVLLKSM 849
V L G + + V A M L+ L L+ IA + ++ A +++ +
Sbjct: 262 QVAEFLSGQLATTALDAVMLVFYALLMLLY-DPVLTLIGIAFAAINVL---ALQLVSRRR 317
Query: 850 SNKAIKAQAESSKLAAEAVSNLR---TITAFSSQHRIL--------KMLEKAQQGPRRES 898
+ + Q ++ KL A+S L+ T+ A + K+L Q+
Sbjct: 318 VDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQ 377
Query: 899 IRQSWYAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKAL--FETFMI--------L 948
I +G L S AL GG + +G ++ L F++ M L
Sbjct: 378 I-------LG-VLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNL 429
Query: 949 VSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRYTKIEPEDPEGHQ-----PERITGNIE 1003
V G + + + D+ + D V+ E+ E R++G +E
Sbjct: 430 VGFGGTLQE---LEGDLNRLDD-------VLRNPVDPLLEEEEAPAAGSEPSPRLSGYVE 479
Query: 1004 LQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKI 1063
L+N+ F Y + + + E FS+ ++ G+ ALVG SGSGKSTI L+ Y P G++
Sbjct: 480 LRNITFGY-SPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILF 538
Query: 1064 DDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDF 1123
D L +A+V Q+ LF GT+R+N+ I ++++V A K A HD
Sbjct: 539 DGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTL-WDPTIPDADLVRACKDAAIHDV 597
Query: 1124 IAGLNEGYDT 1133
I GYD
Sbjct: 598 ITSRPGGYDA 607
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 152 bits (386), Expect = 2e-37
Identities = 82/243 (33%), Positives = 145/243 (59%), Gaps = 11/243 (4%)
Query: 359 GEVEFK--CVQFAYPSRPE-SIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP 415
G VEF+ C+++ R + ++ + +TI G+ V +VG +G+GKS++ L R
Sbjct: 1283 GRVEFRNYCLRY----REDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINES 1338
Query: 416 LGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENI-LFGKEDASMEEVIEAAK 474
GEII+DG++I K+ L LR ++ ++ Q+P LF+ S++ N+ F + S EEV A +
Sbjct: 1339 AEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQ--YSDEEVWWALE 1396
Query: 475 ASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSES 534
++ F+ LP + D + E G +S GQ+Q + +ARA+++ +IL+LDEAT+A+D E+
Sbjct: 1397 LAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLET 1456
Query: 535 ERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTS 594
+ ++Q + T + IAHRL+TI + + V+ G+V E G+ L+Q G++ S
Sbjct: 1457 DNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQR-GIFYS 1515
Query: 595 LVR 597
+ +
Sbjct: 1516 MAK 1518
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 139 bits (352), Expect = 4e-37
Identities = 68/216 (31%), Positives = 102/216 (47%), Gaps = 25/216 (11%)
Query: 380 KDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKL---QLKWLR 436
D +I G+T+ LVG SGSGKST+ + P G II DG + KL K R
Sbjct: 22 DDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81
Query: 437 SQMGLVSQEP--ALFAT-SIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQV 493
++ +V Q+P +L +I E I E + + ++ V
Sbjct: 82 KEIQMVFQDPMSSLNPRMTIGEQI---------AEPLRIHGKLSKKEARKEAVLLLLVGV 132
Query: 494 GERGV-------QMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV 546
G ++SGGQ+QR+AIARA+ P++L+ DE TSALD + + + L K
Sbjct: 133 GLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQ 192
Query: 547 V--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETG 579
G T + I H L + AD +AV+ G+++E G
Sbjct: 193 EELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 138 bits (349), Expect = 1e-36
Identities = 68/218 (31%), Positives = 107/218 (49%), Gaps = 31/218 (14%)
Query: 378 IFKDFCLTIPAGKTVALVGGSGSGKST---VIALLQRFYAPLGGEIILDGVSIDKLQLKW 434
KD L I AG+ VA+VG SGSGKST ++ L + P GE++++G + KL K
Sbjct: 20 ALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK---PTSGEVLINGKDLTKLSEKE 76
Query: 435 L----RSQMGLVSQEPALFAT-SIKENILFG------KEDASMEEVIEAAKASN-AHNFI 482
L R ++G V Q L ++ EN+ E + +
Sbjct: 77 LAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLL 136
Query: 483 RQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEAL 542
++ P + +SGGQ+QR+AIARA+I P+I+L DE T LDS++ + V E L
Sbjct: 137 KKKPSE-----------LSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELL 185
Query: 543 DKAV--VGRTTIIIAHRLSTIRNADVIAVVQDGQVMET 578
+ G+T I++ H + AD + ++DG++ E
Sbjct: 186 RELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEEE 223
|
Length = 226 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 138 bits (351), Expect = 1e-36
Identities = 75/243 (30%), Positives = 120/243 (49%), Gaps = 30/243 (12%)
Query: 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI 420
+E + + F Y +P I D +IP G+ ++G +GSGKST++ L P GE+
Sbjct: 3 LEVENLSFGYGGKP---ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEV 59
Query: 421 ILDGVSIDKLQLKWLRSQMGLVSQEP-ALFATSIKENILFGK----------EDASMEEV 469
+LDG I L K L ++ V Q P A F ++ E +L G+ E V
Sbjct: 60 LLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIV 119
Query: 470 IEAAKASNAHNFIRQLPQQYDTQVGERGV-QMSGGQKQRIAIARAIIKAPRILLLDEATS 528
EA + + +R V ++SGG++QR+ IARA+ + ILLLDE TS
Sbjct: 120 EEALELLGLEHLA------------DRPVDELSGGERQRVLIARALAQETPILLLDEPTS 167
Query: 529 ALDSESERVVQEALDKAVV--GRTTIIIAHRLS-TIRNADVIAVVQDGQVMETGSHDELI 585
LD + V E L G T +++ H L+ R AD + +++DG+++ G+ +E++
Sbjct: 168 HLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227
Query: 586 QAE 588
E
Sbjct: 228 TEE 230
|
Length = 258 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 138 bits (349), Expect = 2e-36
Identities = 82/241 (34%), Positives = 139/241 (57%), Gaps = 6/241 (2%)
Query: 359 GEVEFK--CVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPL 416
GE++ CV++ +P + K I G+ V + G +GSGKS++ R
Sbjct: 18 GEIKIHDLCVRYENNLKP---VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIF 74
Query: 417 GGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKAS 476
G+I++DG+ I KL L LRS++ ++ Q+P LF+ SI+ N L + + + + EA + +
Sbjct: 75 DGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFN-LDPECKCTDDRLWEALEIA 133
Query: 477 NAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESER 536
N ++ LP D V E G S GQ+Q +ARA ++ IL++DEAT+++D +E
Sbjct: 134 QLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATEN 193
Query: 537 VVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLV 596
++Q+ + A RT + IAHR+STI +AD++ V+ G ++E + + L+ E G++ SLV
Sbjct: 194 ILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLV 253
Query: 597 R 597
R
Sbjct: 254 R 254
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 144 bits (366), Expect = 3e-36
Identities = 102/414 (24%), Positives = 167/414 (40%), Gaps = 47/414 (11%)
Query: 744 FAYMGEHLTKR--------IRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSL 795
++ E R +RER+L + W SG + + + V +L
Sbjct: 60 LGWLQERAAARAAAAVKSQLRERLLEAVAALGPRW--LQGRPSGELATLALEG---VEAL 114
Query: 796 VGDRTALLVQTISAVTIAFTMGLFIA---WRLALVMIAVQPLVIICFYARRVLLKSMSNK 852
G L Q + AV + + + W L+++ PL+ I F L+ +
Sbjct: 115 DGYFARYLPQLVLAVIVPLAILAAVFPQDWISGLILLLTAPLIPI-FMI---LIGWAAQA 170
Query: 853 AIKAQ-AESSKLAA---EAVSNLRTITAFSSQHRILKMLEKAQQGPRRESI---RQSWYA 905
A + Q A S+L+ + + L T+ F + ++ + R ++ R ++ +
Sbjct: 171 AARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIRRSSEEYRERTMRVLRIAFLS 230
Query: 906 GIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRV---IADAGSMT 962
L +L+ A+ G RL+A L +L+ + G+
Sbjct: 231 SAVLELFATLSVALVAVYI--GFRLLA----GDLDLATGLFVLLLAPEFYLPLRQLGAQY 284
Query: 963 TDIAKGSDAVGSVFAVMDRYTKIEPED---PEGHQPERITGNIELQNVHFAYPARPDVMI 1019
A G A ++FAV+D + P +E V AYP R +
Sbjct: 285 HARADGVAAAEALFAVLDAAPRPLAGKAPVTAAPAPS-----LEFSGVSVAYPGRRPAL- 338
Query: 1020 FEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRH 1079
S + G+ ALVG SG+GKST++ L+ F DP +G + ++ + S R
Sbjct: 339 -RPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQ 397
Query: 1080 IALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133
IA V Q P LFAGTI ENI D ++EI EA + A +F+A L +G DT
Sbjct: 398 IAWVPQHPFLFAGTIAENIRLARPDA-SDAEIREALERAGLDEFVAALPQGLDT 450
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 144 bits (366), Expect = 7e-36
Identities = 107/360 (29%), Positives = 163/360 (45%), Gaps = 68/360 (18%)
Query: 806 TISAVTIAFTMGLFIAWRLALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAES--SKL 863
T+ A+ + + LF+ WRL+LV++ + ++ V+ K+ K +A E L
Sbjct: 140 TLVALVVLLPLALFMNWRLSLVLVVL--GIVYTLITTLVMRKT---KDGQAAVEEHYHDL 194
Query: 864 AA---EAVSNLRTITAF-------SSQHRILKMLEKAQQGPRRESIRQSWYAGIGLAFSQ 913
A +A+ N+ + ++ + I L AQ P SW+A LA
Sbjct: 195 FAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQM-PV-----LSWWA---LASVL 245
Query: 914 SLASCTWALDFWYGGRLIADGYISSKALFETFMILV-----STGRVIADAGSMTTDIAKG 968
+ A+ T I+ A+ LV G V+A G T I +
Sbjct: 246 NRAAST----------------ITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRL 289
Query: 969 SDAVGSV-------------FAVMDRYTKIEPEDPEG-HQPERITGNIELQNVHFAYP-A 1013
V + F V D + DP G R+ G +E +V F+Y +
Sbjct: 290 DQVVAFINQVFMAAPKLEEFFEVED--AVPDVRDPPGAIDLGRVKGAVEFDDVSFSYDNS 347
Query: 1014 RPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHL 1073
R V E S + + G++ A+VG +G+GKST+I L++R +DP G + ID DIR+
Sbjct: 348 RQGV---EDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTR 404
Query: 1074 RSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133
SLRR+IA+V Q+ LF +I +NI G D DE E+ AA+ A AHDFI +GYDT
Sbjct: 405 ASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDE-EMRAAAERAQAHDFIERKPDGYDT 463
|
Length = 588 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 4e-35
Identities = 54/134 (40%), Positives = 76/134 (56%), Gaps = 2/134 (1%)
Query: 1000 GNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKG 1059
G IE +NV F+YP + + + S+ I AG+ A++G+ GSGKST++ L+ Y P G
Sbjct: 1 GRIEFRNVSFSYPNQEIPAL-DNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSG 59
Query: 1060 DVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAAN 1119
V +D DIR LRR+I V Q+ TLF GT+R+NI GA D+ I+ AA+ A
Sbjct: 60 SVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAP-LADDERILRAAELAG 118
Query: 1120 AHDFIAGLNEGYDT 1133
DF+ G D
Sbjct: 119 VTDFVNKHPNGLDL 132
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 134 bits (340), Expect = 4e-35
Identities = 83/248 (33%), Positives = 135/248 (54%), Gaps = 39/248 (15%)
Query: 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI 420
+E + V ++ R +I L +P G+ +A++GGSGSGKST++ L+ P GEI
Sbjct: 9 IEVRGVTKSFGDR---VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEI 65
Query: 421 ILDGVSIDKL---QLKWLRSQMGLVSQEPALF-ATSIKENILFG-KEDASMEEVIEAAKA 475
++DG I +L +L +R +MG++ Q+ ALF + ++ EN+ F +E + E
Sbjct: 66 LIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPE------- 118
Query: 476 SNAHNFIRQLPQQYDTQVGERGV-------QMSGGQKQRIAIARAIIKAPRILLLDEATS 528
+ IR+L VG RG ++SGG ++R+A+ARAI P +L LDE TS
Sbjct: 119 ----SLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTS 174
Query: 529 ALDSESERV-------VQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGS 580
LD S V + +AL G T I++ H L ++ AD +AV+ DG+V+ G+
Sbjct: 175 GLDPISAGVIDELIRELNDAL-----GLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGT 229
Query: 581 HDELIQAE 588
+EL+ ++
Sbjct: 230 PEELLASD 237
|
Length = 263 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 4e-35
Identities = 70/209 (33%), Positives = 104/209 (49%), Gaps = 45/209 (21%)
Query: 372 SRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKL- 430
+ + D L I AG+ VAL+G SGSGKST++ + P G I++DG + L
Sbjct: 9 RYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLE 68
Query: 431 -QLKWLRSQMGLVSQEPALFAT-SIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQ 488
+L LR ++G+V Q+ ALF ++ ENI G
Sbjct: 69 DELPPLRRRIGMVFQDFALFPHLTVLENIALG---------------------------- 100
Query: 489 YDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALD--KAV 546
+SGGQ+QR+A+ARA+ P +LLLDE TSALD + R V+ L +A
Sbjct: 101 -----------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQ 149
Query: 547 VGRTTIIIAHRLS-TIRNADVIAVVQDGQ 574
+G T +++ H L R AD + V++DG+
Sbjct: 150 LGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 7e-35
Identities = 74/224 (33%), Positives = 109/224 (48%), Gaps = 34/224 (15%)
Query: 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSI-DKLQLKWLR 436
+ K L++ G+ V ++G SGSGKST++ L P G I +DG + DK + LR
Sbjct: 17 VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLR 76
Query: 437 SQMGLVSQEPALFA-TSIKENILFG-----KEDASMEEVIEAAK--------ASNAHNFI 482
++G+V Q+ LF ++ EN+ K S E E A A A +
Sbjct: 77 RKVGMVFQQFNLFPHLTVLENVTLAPVKVKKL--SKAEAREKALELLEKVGLADKADAYP 134
Query: 483 RQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEAL 542
QL SGGQ+QR+AIARA+ P+++L DE TSALD E V + +
Sbjct: 135 AQL---------------SGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVM 179
Query: 543 -DKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584
D A G T II+ H + R AD + + G+++E G +E
Sbjct: 180 KDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEF 223
|
Length = 240 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 134 bits (340), Expect = 8e-35
Identities = 66/235 (28%), Positives = 116/235 (49%), Gaps = 30/235 (12%)
Query: 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRS 437
+ G+ L+G +G+GK+T++ +L P GEI++ G + K + +R
Sbjct: 20 ALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVK-EPAKVRR 78
Query: 438 QMGLVSQEPALFAT-SIKENILF---------GKEDASMEEVIEAAK-ASNAHNFIRQLP 486
++G V QEP+L+ +++EN+ F + + +EE++E A+ +R L
Sbjct: 79 RIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTL- 137
Query: 487 QQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEAL-DKA 545
SGG KQR++IA A++ P +L+LDE TS LD ES R + E L + A
Sbjct: 138 --------------SGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELA 183
Query: 546 VVGRTTIIIA-HRLSTI-RNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRL 598
G TI+++ H L D + ++ DG+++ G+ +EL + G +
Sbjct: 184 KEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGVIELEP 238
|
Length = 293 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 2e-34
Identities = 108/427 (25%), Positives = 187/427 (43%), Gaps = 33/427 (7%)
Query: 720 SIYAFCFLGLAVFTLVINIIQHYNFAYMGEHLTKRIR----ERMLSKILTFEVGWFDQDE 775
S+ A L +A+F + ++ Y FA HLT RI R+ +L +G+F+
Sbjct: 179 SVLALAMLAVAIFEPALGGLRTYLFA----HLTSRIDVELGARLYRHLLGLPLGYFESRR 234
Query: 776 NSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWRLALVMIAVQPLV 835
G +R+ + + L G +++ + V M F + L V+I
Sbjct: 235 --VGDTVARVRELEQIRNFLTGSALTVVLDLLFVVVFLAVM-FFYSPTLTGVVIGSLVCY 291
Query: 836 IICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPR 895
+ +L+ + A ++ E+V+ + TI A +++ + ++
Sbjct: 292 ALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYV 351
Query: 896 RESIRQSWYAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVI 955
S R + I + + T+A+ W+G L+ G +S L M+ GRV
Sbjct: 352 AASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNML---AGRVT 408
Query: 956 ADAGSMTT---DIAKGSDAVGSVFAVMDRYTKIEPEDPEGHQ-----PERITGNIELQNV 1007
+ D + A+ + +++ P +P PE + G I +N+
Sbjct: 409 QPVLRLAQLWQDFQQTGIALERLGDILN-----SPTEP-RSAGLAALPE-LRGAITFENI 461
Query: 1008 HFAY-PARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDR 1066
F Y P P+V+ ++ I+ G+ +VG SGSGKST+ L++R Y P G V +D
Sbjct: 462 RFRYAPDSPEVL--SNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGV 519
Query: 1067 DIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAG 1126
D+ LRR + +V QE LF+ +IR+NIA + ++ AAK A AHDFI+
Sbjct: 520 DLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALC-NPGAPFEHVIHAAKLAGAHDFISE 578
Query: 1127 LNEGYDT 1133
L +GY+T
Sbjct: 579 LPQGYNT 585
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 2e-34
Identities = 68/215 (31%), Positives = 112/215 (52%), Gaps = 23/215 (10%)
Query: 375 ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKW 434
D LT+ G+ +AL+G SG GK+T++ L+ P GEI++DG + + +
Sbjct: 12 SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPE- 70
Query: 435 LRSQMGLVSQEPALFAT-SIKENILFG------KEDASMEEVIEAAKASNAHNFIRQLPQ 487
R +G+V Q+ ALF ++ ENI FG + V E + + + P
Sbjct: 71 -RRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPH 129
Query: 488 QYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDK--A 545
+ +SGGQ+QR+A+ARA+ + P +LLLDE SALD++ ++E L +
Sbjct: 130 E-----------LSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQR 178
Query: 546 VVGRTTIIIAHRLS-TIRNADVIAVVQDGQVMETG 579
+G TTI + H + AD IAV+ +G++++ G
Sbjct: 179 ELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 134 bits (340), Expect = 2e-34
Identities = 72/233 (30%), Positives = 122/233 (52%), Gaps = 14/233 (6%)
Query: 361 VEFKCVQFAYPSRPES--IIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGG 418
+E + V + D L IP G+ ++G SG+GKST++ L+ P G
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 419 EIILDGVSIDKL---QLKWLRSQMGLVSQEPALFAT-SIKENILFGKEDASMEEVIEAAK 474
+ +DG + L +L+ LR ++G++ Q L ++ ++ EN+ F E A + + +
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQR 121
Query: 475 ASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSES 534
+ + L + D Q+SGGQKQR+AIARA+ P+ILL DEATSALD E+
Sbjct: 122 VAELLELV-GLSDKADR----YPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPET 176
Query: 535 ERVVQEALDK--AVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584
+ + E L +G T ++I H + ++ D +AV+ G+++E G+ E+
Sbjct: 177 TQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEV 229
|
Length = 339 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 4e-34
Identities = 70/223 (31%), Positives = 119/223 (53%), Gaps = 24/223 (10%)
Query: 380 KDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFY-----APLGGEIILDGVSI--DKLQL 432
K+ L IP + AL+G SG GKST++ L R + G+++ DG I K+ +
Sbjct: 18 KNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDV 77
Query: 433 KWLRSQMGLVSQEPALFATSIKENILFG------KEDASMEEVIEAA--KASNAHNFIRQ 484
LR ++G+V Q+P F SI +NI +G K+ ++E++E + KA+
Sbjct: 78 VELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAA-------- 129
Query: 485 LPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDK 544
L + ++ + + +SGGQ+QR+ IARA+ P +LLLDE TSALD + ++E + +
Sbjct: 130 LWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQE 189
Query: 545 AVVGRTTIIIAHRLS-TIRNADVIAVVQDGQVMETGSHDELIQ 586
T +I+ H + R +D A DG+++E G +++
Sbjct: 190 LKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFT 232
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 8e-34
Identities = 117/470 (24%), Positives = 211/470 (44%), Gaps = 53/470 (11%)
Query: 657 IKKLPVPSFRRLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDH-DEI 715
IK +P F L A K + V AT+ G P + G ++ L ++ ++I
Sbjct: 40 IKTQKIPFFLPFKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLGENVNDI 99
Query: 716 KKKTSIYAFCFLGLAVFTLVINIIQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDE 775
I++ +G+ F +++ I + + + K ++ L + ++ G F D
Sbjct: 100 -----IFSLVLIGI--FQFILSFISSFCMDVVTTKILKTLKLEFLKSVF-YQDGQF-HDN 150
Query: 776 NSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWRLALVMIAVQPLV 835
N + S L V + +G + + SA + LF RL L + V PL+
Sbjct: 151 NPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTLCITCVFPLI 210
Query: 836 IICFYARRVLLKSMSNKAIKAQAESSKL--------AAEAVSNLRTITAFSSQHRILKML 887
IC + NK +K ++S L EA+ +RT+ ++ + ILK
Sbjct: 211 YIC--------GVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKF 262
Query: 888 EKAQQGPRRESIRQSWYAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKA------- 940
+++ + ++ ++ + + ++A FWYG R+I + +
Sbjct: 263 NLSEKLYSKYILKANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGG 322
Query: 941 ---------LFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRYTKIEPEDPE 991
L FM+ + + T+ K +A S++ +++R +E D +
Sbjct: 323 SVISILLGVLISMFMLTIILPNI--------TEYMKSLEATNSLYEIINRKPLVENND-D 373
Query: 992 GHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIE 1051
G + + I I+ +NV F Y R DV I++ + + GK+ A VG+SG GKSTI+ LIE
Sbjct: 374 GKKLKDIK-KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIE 432
Query: 1052 RFYDPLKGDVKIDD-RDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAY 1100
R YDP +GD+ I+D +++ +L+ R I +VSQ+P LF+ +I+ NI Y
Sbjct: 433 RLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKY 482
|
Length = 1466 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 128 bits (325), Expect = 2e-33
Identities = 71/243 (29%), Positives = 120/243 (49%), Gaps = 33/243 (13%)
Query: 361 VEFKCVQFAYPSRPESII-FKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGE 419
+E K V + + KD L++P G+ ++G SG+GKST+I + P G
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61
Query: 420 IILDGVSIDKL---QLKWLRSQMGLVSQEPALFAT-SIKENILFGKEDA--SMEEVIEAA 473
+++DG + L +L+ R ++G++ Q L ++ ++ EN+ E A E+ E
Sbjct: 62 VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERV 121
Query: 474 K--------ASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDE 525
A + QL SGGQKQR+ IARA+ P++LL DE
Sbjct: 122 LELLELVGLEDKADAYPAQL---------------SGGQKQRVGIARALANNPKVLLCDE 166
Query: 526 ATSALDSESERVVQEALDK--AVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHD 582
ATSALD E+ + + L +G T ++I H + ++ D +AV++ G+V+E G+ +
Sbjct: 167 ATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVE 226
Query: 583 ELI 585
E+
Sbjct: 227 EVF 229
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 5e-33
Identities = 78/247 (31%), Positives = 128/247 (51%), Gaps = 40/247 (16%)
Query: 362 EFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEII 421
E + + YP+ +++ KD L+I G+ VAL+G SG+GKST++ L P G ++
Sbjct: 2 EVENLSKTYPNGKKAL--KDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVL 59
Query: 422 LDGVSIDKLQ---LKWLRSQMGLVSQEPALFA-TSIKENILFGKEDASMEEVIEAAKASN 477
+DG I+KL+ L+ LR Q+G++ Q+ L S+ EN+L G+
Sbjct: 60 IDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGR--------------LG 105
Query: 478 AHNFIRQLPQQYD-----------TQVG------ERGVQMSGGQKQRIAIARAIIKAPRI 520
+ R L + +VG +R Q+SGGQ+QR+AIARA+++ P++
Sbjct: 106 RRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKL 165
Query: 521 LLLDEATSALDSESERVVQEALDKA--VVGRTTIIIAHRLSTIR-NADVIAVVQDGQVME 577
+L DE ++LD S R V + L + G T I+ H++ R AD I ++DG+++
Sbjct: 166 ILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVF 225
Query: 578 TGSHDEL 584
G EL
Sbjct: 226 DGPPAEL 232
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 138 bits (349), Expect = 7e-33
Identities = 79/242 (32%), Positives = 137/242 (56%), Gaps = 8/242 (3%)
Query: 359 GEVEFKCVQFAYPSRPE-SIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLG 417
G ++F+ V Y RPE + I + V +VG +G+GKS+++ L R
Sbjct: 1236 GSIKFEDVVLRY--RPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELER 1293
Query: 418 GEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENI-LFGKE-DASMEEVIEAAKA 475
G I++DG I K L LR +G++ Q P LF+ +++ N+ F + DA + E +E A
Sbjct: 1294 GRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHL 1353
Query: 476 SNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESE 535
+ IR+ D +V E G S GQ+Q +++ARA+++ +IL+LDEAT+A+D ++
Sbjct: 1354 KDV---IRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTD 1410
Query: 536 RVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSL 595
++Q+ + + T +IIAHRL+TI + D I V+ G+V+E + + L+ E ++ +
Sbjct: 1411 ALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKM 1470
Query: 596 VR 597
V+
Sbjct: 1471 VQ 1472
|
Length = 1622 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 130 bits (328), Expect = 1e-32
Identities = 70/233 (30%), Positives = 124/233 (53%), Gaps = 19/233 (8%)
Query: 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGG 418
+E + V ++ D L I G+ V L+G SG GK+T++ ++ F P G
Sbjct: 4 PALEIRNVSKSFGD---FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSG 60
Query: 419 EIILDGVSIDKLQLKWLRSQMGLVSQEPALFAT-SIKENILFGKEDASM--EEVIEAAKA 475
EI+LDG I + + + +G+V Q ALF +++EN+ FG + + I+A +
Sbjct: 61 EILLDGEDITDVPPE--KRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKA-RV 117
Query: 476 SNAHNFIRQLPQQYDTQVGERGV-QMSGGQKQRIAIARAIIKAPRILLLDEATSALDSES 534
A + +R Q+SGGQ+QR+A+ARA++ P++LLLDE SALD++
Sbjct: 118 EEALELVG------LEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKL 171
Query: 535 ERVVQEALDKAV--VGRTTIIIAH-RLSTIRNADVIAVVQDGQVMETGSHDEL 584
+++ L + +G T + + H + + +D IAV+ DG++ + G+ +E+
Sbjct: 172 REQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEI 224
|
Length = 352 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 2e-32
Identities = 76/280 (27%), Positives = 129/280 (46%), Gaps = 39/280 (13%)
Query: 339 KRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESII--------FKDFCLTIPAGK 390
KI G + L V + + Y SR + D + G+
Sbjct: 261 LGDEKIIRLPRRGPLRAEPLLSV--RNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGE 318
Query: 391 TVALVGGSGSGKSTVIALLQRFYAPLGGEIILDG--VSIDKLQLKWLRSQMGLVSQEPAL 448
T+ LVG SGSGKST+ +L P G II DG + + +L+ LR ++ +V Q+P
Sbjct: 319 TLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDP-- 376
Query: 449 FAT-----SIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVG-ERGV---- 498
+++ ++ + + E + A+ ++ + + VG
Sbjct: 377 YSSLNPRMTVGDIL---AEPLRIHGGGSGAERR------ARVAELLE-LVGLPPEFLDRY 426
Query: 499 --QMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIII 554
++SGGQ+QR+AIARA+ P++L+LDE SALD + V L +G T + I
Sbjct: 427 PHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFI 486
Query: 555 AHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQAESGLYT 593
+H L+ +R AD +AV+ DG+++E G +++ + YT
Sbjct: 487 SHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQHPYT 526
|
Length = 539 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 127 bits (320), Expect = 3e-32
Identities = 65/260 (25%), Positives = 121/260 (46%), Gaps = 7/260 (2%)
Query: 47 GFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACFLEGYCWTR 106
+ + + ++ +L +A+G L
Sbjct: 8 LILAGATALVFPLLLGRFLDSLID--GNGDERSSLISLAILLIAVGVLQGLLL--QGSFY 63
Query: 107 TGERQATRMRARYLKAVLRQDVGYFD--LHVTSTAEVITSVSNDSLVIQDAISEKLPNFV 164
GER R+R R +A+LRQ +G S E+ + ++ND I+D + +KL F
Sbjct: 64 LGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLGDKLGLFF 123
Query: 165 MNASLFFGCYLVAFLMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIA 224
+ + G ++V F W+L +V + LL++ + + L L RK + Y KAG++A
Sbjct: 124 QSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKAYAKAGSVA 183
Query: 225 EQAISSIRTVYAFVGESKTINEFSSALQGSVQLGLKQGLAKGLAIG-SNGVTFGIWSFLC 283
E+++S IRTV AF E + + AL+ + + G+K+ + GL+ G + +++ ++
Sbjct: 184 EESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAITAGLSFGITQLISYLSYALAL 243
Query: 284 YYGSRMVMYHGAQGGTVFAV 303
++G+ +V+ G GTVFA
Sbjct: 244 WFGAYLVISGGLSVGTVFAF 263
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 127 bits (320), Expect = 3e-32
Identities = 71/238 (29%), Positives = 129/238 (54%), Gaps = 22/238 (9%)
Query: 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI 420
++ + V F+YP+ E+ K+ I G+ VA++G +GSGKST+ +L P GEI
Sbjct: 8 IKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI 66
Query: 421 ILDGVSIDKLQLKWLRSQMGLVSQEP--ALFATSIKENILFGKED-----ASMEEVI-EA 472
+DG++I K LK +R ++G++ Q P +++++I FG E+ M+++I +
Sbjct: 67 KIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDL 126
Query: 473 AKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDS 532
AK +++ + PQ +SGGQKQR+AIA + P I++ DE+TS LD
Sbjct: 127 AKKVGMEDYLDKEPQ-----------NLSGGQKQRVAIASVLALNPEIIIFDESTSMLDP 175
Query: 533 ESERVVQEALD--KAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAE 588
+ +R +++ + + +T I I H + AD + V +G+++ G E++ +
Sbjct: 176 KGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNNK 233
|
Length = 271 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 124 bits (315), Expect = 3e-32
Identities = 61/206 (29%), Positives = 99/206 (48%), Gaps = 26/206 (12%)
Query: 361 VEFKCVQFAYPSRPESI-IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGE 419
+E + V Y ++ +D L++ G+ VALVG SG GKST++ ++ P GE
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 420 IILDGVSIDKLQLKWLRSQMGLVSQEPALFA-TSIKENILFGKEDASMEEVIEAAKASNA 478
+++DG + G V Q+ AL ++ +N+ G +E A
Sbjct: 61 VLVDGEPVTGP-----GPDRGYVFQQDALLPWLTVLDNVALG---------LELQGVPKA 106
Query: 479 HNFIRQLPQQYDTQVGERGV------QMSGGQKQRIAIARAIIKAPRILLLDEATSALDS 532
R+ ++ VG G Q+SGG +QR+A+ARA+ P +LLLDE SALD+
Sbjct: 107 E--ARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDA 164
Query: 533 ESERVVQEALDKAVV--GRTTIIIAH 556
+ +QE L G+T +++ H
Sbjct: 165 LTREQLQEELLDIWRETGKTVLLVTH 190
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 124 bits (314), Expect = 6e-32
Identities = 75/229 (32%), Positives = 116/229 (50%), Gaps = 26/229 (11%)
Query: 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGE 419
E+EFK V + S I KD + G +VG SG+GKST+I L+ R P G
Sbjct: 3 EIEFKEVSY---SSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGS 59
Query: 420 IILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENI-----LFGKEDASMEEVIEAAK 474
I++DGV I + + LR ++G+V Q+P LF ++K+NI L G+++ +E +
Sbjct: 60 ILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVG 119
Query: 475 ASNAHNFIRQLPQQYDTQVGERGVQ-MSGGQKQRIAIARAIIKAPRILLLDEATSALDSE 533
+ + R V+ +SGG+ QR++IAR + P +LLLDE TSALD
Sbjct: 120 LNKEYAT--------------RDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPT 165
Query: 534 SERVVQEALD--KAVVGRTTIIIAHRLSTI-RNADVIAVVQDGQVMETG 579
S +++E + K + T I I H + R D A + G ++E
Sbjct: 166 STEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYA 214
|
Length = 241 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 7e-32
Identities = 75/253 (29%), Positives = 120/253 (47%), Gaps = 38/253 (15%)
Query: 361 VEFKCVQFAYPSRPESI-IFKDFCLTIPAGKTVALVGGSGSGKST---VIALLQRFYAPL 416
+ + + Y + + L I G+T+ +VG SGSGKST ++A L++ +
Sbjct: 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSS-- 61
Query: 417 GGEIILDGVSIDKLQ-LKWLRSQMGLVSQEPAL-------FATSIKENILFGKEDASMEE 468
G I+LDG + + K + +V Q+P + E + S +
Sbjct: 62 -GSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQR 120
Query: 469 VIEAAKASNAHN-FIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEAT 527
+ E F+ + P ++SGGQ+QRIAIARA+I P++L+LDE T
Sbjct: 121 IAELLDQVGLPPSFLDRRP-----------HELSGGQRQRIAIARALIPEPKLLILDEPT 169
Query: 528 SALDSESERVVQ-EALD-----KAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGS 580
SALD VQ + L+ K G T + I+H L+ + + D IAV+ +GQ++E G
Sbjct: 170 SALDV----SVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGP 225
Query: 581 HDELIQAESGLYT 593
+EL+ S YT
Sbjct: 226 TEELLSHPSHPYT 238
|
Length = 252 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 135 bits (340), Expect = 8e-32
Identities = 143/566 (25%), Positives = 246/566 (43%), Gaps = 62/566 (10%)
Query: 89 LALGSWVACFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSND 148
L G F + + A R+ L ++LR + +F H T VI S D
Sbjct: 959 LGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFF--HTNPTGRVINRFSKD 1016
Query: 149 SLVIQDAISEKLPNFVMNA----SLFFGCYLVAFLMLWRLAIVGFPFVVLLVIPGLMYGR 204
I ++ + F+ S F V+ + LW + P ++L L Y
Sbjct: 1017 IGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTISLWAI----MPLLILFYAAYLYYQS 1072
Query: 205 TLMSLARKMR--DEYNKAGTIAE-----QAISSIRTVYAFVGESKTINEFSSALQGSVQL 257
T +R++R D ++ A+ +SSIR A+ +K IN ++ +++
Sbjct: 1073 T----SREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAK-IN--GKSMDNNIRF 1125
Query: 258 GLKQGLAKG-LAIGSNGVTFG---IWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLA 313
L + L I T G IW + ++ A+ FA + GL
Sbjct: 1126 TLANTSSNRWLTIRL--ETLGGVMIWLTATF---AVLRNGNAENQAGFA-----STMGLL 1175
Query: 314 LGAGLPNLKYFSEAM---AAGERIMEMIKRVPK-IDSDSMEGEILEN--------VLGEV 361
L L S + + E + ++RV ID S I+EN G +
Sbjct: 1176 LSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSI 1235
Query: 362 EFKCVQFAYPSRPE-SIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI 420
+F+ V Y RP + + + V +VG +G+GKS+++ L R G I
Sbjct: 1236 KFEDVHLRY--RPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRI 1293
Query: 421 ILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKE--DASMEEVIEAAKASNA 478
++D + K L LR + ++ Q P LF+ +++ NI E DA + E +E A +
Sbjct: 1294 MIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDV 1353
Query: 479 HNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVV 538
I + P D +V E G S GQ+Q +++ARA+++ +IL+LDEAT+++D ++ ++
Sbjct: 1354 ---IDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLI 1410
Query: 539 QEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRL 598
Q + + T ++IAHRL+TI + D I V+ GQV+E S EL+ ++ + +V
Sbjct: 1411 QRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMV-- 1468
Query: 599 QTTTPDDNNNATMHSLASKSSNMDMN 624
+T P N + +L + M+
Sbjct: 1469 HSTGPA--NAQYLSNLVFERRENGMS 1492
|
Length = 1495 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 2e-31
Identities = 74/233 (31%), Positives = 108/233 (46%), Gaps = 33/233 (14%)
Query: 361 VEFKCVQFAYPSRPESI-IFKDFCLTIPAGKTVALVGGSGSGKST---VIALLQRFYAPL 416
+E K + Y E + K L+I G+ VA+VG SGSGKST ++ L R P
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR---PT 57
Query: 417 GGEIILDGVSIDKLQLKWL----RSQMGLVSQEPALFAT-SIKENILF-----GKEDASM 466
GE+ +DG I KL K L R +G V Q L + EN+ G
Sbjct: 58 SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKER 117
Query: 467 EEVIEAAKASNAHNFIRQ--LPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLD 524
E A + + L + + ++SGGQ+QR+AIARA+ P+I+L D
Sbjct: 118 RER--------AEELLERVGLGDRLNHYPS----ELSGGQQQRVAIARALANDPKIILAD 165
Query: 525 EATSALDSESERVVQEALDK--AVVGRTTIIIAHRLSTIRNADVIAVVQDGQV 575
E T LDSE+ + V E L + G T +++ H AD I ++DG++
Sbjct: 166 EPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 3e-31
Identities = 92/370 (24%), Positives = 154/370 (41%), Gaps = 27/370 (7%)
Query: 777 SSGAICSRLAKDAN-----VVRSLVGDRTALLVQTISAVTIAFTMGLFIAWRLALVMIAV 831
G + RL D + VR +V AL+V + IA ++ AL++ A
Sbjct: 108 RRGDLLGRLGADVDALQDLYVRVIVPAGVALVVGAAAVAAIAV-----LSVPAALILAAG 162
Query: 832 QPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLR---TITAFSSQHRILKMLE 888
L++ F A V L++ +LAA+ L + A + L +E
Sbjct: 163 --LLLAGFVAPLVSLRAARAAEQALARLRGELAAQLTDALDGAAELVASGALPAALAQVE 220
Query: 889 KAQQGPRRESIRQSWYAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMIL 948
+A + R R + +G A + A W GG +ADG ++ L +L
Sbjct: 221 EADRELTRAERRAAAATALGAALTLLAAGLAVLGALWAGGPAVADGRLAPVTL----AVL 276
Query: 949 VSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRYTKIEPEDPEGHQPERITG-----NIE 1003
V +A + A+ V + + EG P +E
Sbjct: 277 VLLPLAAFEAFAALPAAAQQLTRVRAAAERIVEVLDAAGPVAEGSAPAAGAVGLGKPTLE 336
Query: 1004 LQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKI 1063
L+++ YP P V +G S+ + G+ A++G SGSGKST++ + DPL+G+V +
Sbjct: 337 LRDLSAGYPGAPPV--LDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTL 394
Query: 1064 DDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDF 1123
D + S +RR +++ +Q+ LF T+REN+ D DE E+ A + D+
Sbjct: 395 DGVPVSSLDQDEVRRRVSVCAQDAHLFDTTVRENLRLARPDATDE-ELWAALERVGLADW 453
Query: 1124 IAGLNEGYDT 1133
+ L +G DT
Sbjct: 454 LRALPDGLDT 463
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 4e-31
Identities = 67/221 (30%), Positives = 117/221 (52%), Gaps = 25/221 (11%)
Query: 380 KDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKL---QLKWLR 436
D L + G+ ++G SGSGKST++ + R P G++++DG I + +L+ LR
Sbjct: 41 NDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELR 100
Query: 437 SQ-MGLVSQEPALFA-TSIKENILFGKEDASMEEVIEAAKASNA------HNFIRQLPQQ 488
+ + +V Q AL ++ EN+ FG E + +A+ A + + P +
Sbjct: 101 RKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDE 160
Query: 489 YDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDK--AV 546
+SGG +QR+ +ARA+ P ILL+DEA SALD R +Q+ L + A
Sbjct: 161 -----------LSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAE 209
Query: 547 VGRTTIIIAHRLS-TIRNADVIAVVQDGQVMETGSHDELIQ 586
+ +T + I H L +R D IA+++DG++++ G+ +E++
Sbjct: 210 LQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILT 250
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 2e-30
Identities = 72/217 (33%), Positives = 111/217 (51%), Gaps = 37/217 (17%)
Query: 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSI--DKLQLKWL 435
+ K LT+ G+ V ++G SGSGKST++ + P G II+DG+ + DK + L
Sbjct: 15 VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINEL 74
Query: 436 RSQMGLVSQEPALFA-TSIKENILFG--------KEDA---SMEEVIEAAKASNAHNFIR 483
R ++G+V Q+ LF ++ ENI K +A ++E + + A A +
Sbjct: 75 RQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPA 134
Query: 484 QLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALD 543
QL SGGQ+QR+AIARA+ P+++L DE TSALD E +V E LD
Sbjct: 135 QL---------------SGGQQQRVAIARALAMNPKVMLFDEPTSALDPE---LVGEVLD 176
Query: 544 K----AVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQV 575
A G T +++ H + R AD + + DG++
Sbjct: 177 VMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 2e-30
Identities = 75/224 (33%), Positives = 120/224 (53%), Gaps = 31/224 (13%)
Query: 380 KDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLG-----GEIILDGVSI--DKLQL 432
KD L IP K AL+G SG GKST++ L R + GE++LDG +I K+ +
Sbjct: 24 KDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83
Query: 433 KWLRSQMGLVSQEPALFATSIKENI-----LFGKEDASMEEVIEAA--KASNAHNFIRQL 485
LR ++G+V Q+P F SI +N+ L G +D ++E++E++ KA+
Sbjct: 84 VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWD------ 137
Query: 486 PQQYDTQVGER----GVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEA 541
+V +R + +SGGQ+QR+ IARA+ P +LL+DE TSALD S ++E
Sbjct: 138 ------EVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEEL 191
Query: 542 LDKAVVGRTTIIIAHRLS-TIRNADVIAVVQDGQVMETGSHDEL 584
+ + T +I+ H + R +D A G+++E G D++
Sbjct: 192 ITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKI 235
|
Length = 253 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 2e-30
Identities = 64/206 (31%), Positives = 105/206 (50%), Gaps = 29/206 (14%)
Query: 377 IIFKDFCLTIPAGKTVALVGGSGSGKST---VIALLQRFYAPLGGEIILDGVSI----DK 429
+I D LTI GK A++G SGSGKST +I LL++F G++ L+G K
Sbjct: 12 VILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFD---SGQVYLNGQETPPLNSK 68
Query: 430 LQLKWLRSQMGLVSQEPALFAT-SIKENILFG------KEDASMEEVIEAAKASNAHNFI 482
K+ R ++G + Q AL +++EN+ G + E+ EA + + +
Sbjct: 69 KASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKL 128
Query: 483 RQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEAL 542
+Q + +SGG++QR+A+ARAI+K P ++L DE T +LD ++ V + L
Sbjct: 129 KQKIYE-----------LSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLL 177
Query: 543 DKAV-VGRTTIIIAHRLSTIRNADVI 567
+ G+T II+ H + AD +
Sbjct: 178 LELNDEGKTIIIVTHDPEVAKQADRV 203
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 4e-30
Identities = 61/221 (27%), Positives = 102/221 (46%), Gaps = 52/221 (23%)
Query: 366 VQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGV 425
+ Y R + D L+I AG+ V ++G +G+GKST++ L P GEI+LDG
Sbjct: 5 LSVGYGGRT---VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGK 61
Query: 426 SIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASN-AHNFIRQ 484
+ L K L ++ V Q +E ++ A +
Sbjct: 62 DLASLSPKELARKIAYVPQ------------------------ALELLGLAHLADRPFNE 97
Query: 485 LPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALD--SESE---RVVQ 539
L SGG++QR+ +ARA+ + P ILLLDE TS LD + E + +
Sbjct: 98 L---------------SGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRR 142
Query: 540 EALDKAVVGRTTIIIAHRLS-TIRNADVIAVVQDGQVMETG 579
A ++ G+T +++ H L+ R AD + +++DG+++ G
Sbjct: 143 LARER---GKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 121 bits (307), Expect = 5e-30
Identities = 75/238 (31%), Positives = 125/238 (52%), Gaps = 32/238 (13%)
Query: 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGE 419
E+E K V+ ++ S + KD L I G+ V L+G SG GKST++ ++ P GE
Sbjct: 3 ELELKNVRKSFGSFE---VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGE 59
Query: 420 IILDGVSIDKLQLKWLRSQMGLVSQEPALFAT-SIKENILFG-------KEDASMEEVIE 471
I++DG + L + + + +V Q AL+ ++ ENI FG K + + V E
Sbjct: 60 ILIDGRDVTDLPPE--KRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEID-KRVKE 116
Query: 472 AAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALD 531
AK + + + P +Q+SGGQ+QR+A+ARA+++ P++ LLDE S LD
Sbjct: 117 VAKLLGLEHLLNRKP-----------LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLD 165
Query: 532 SESERVVQEAL--DKAVVGRTTIIIAHRL---STIRNADVIAVVQDGQVMETGSHDEL 584
++ +++ + +G TTI + H T+ AD I V+ DG++ + G+ EL
Sbjct: 166 AKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTL--ADRIVVMNDGRIQQVGTPLEL 221
|
Length = 338 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 7e-30
Identities = 77/251 (30%), Positives = 121/251 (48%), Gaps = 40/251 (15%)
Query: 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI 420
+E K + YP KD L I G+ VA++G SG+GKST++ L P GEI
Sbjct: 4 IEVKNLSKTYPGG--HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEI 61
Query: 421 ILDGVSIDKL---QLKWLRSQMGLVSQEPALFA-TSIKENILFGKEDASMEEVIEAAKAS 476
+ +GV I KL +L+ LR +G++ Q+ L S+ EN+L G+
Sbjct: 62 LFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRL-------------- 107
Query: 477 NAHNFIRQL-----PQQYD------TQVG------ERGVQMSGGQKQRIAIARAIIKAPR 519
+ R L + +VG +R +SGGQ+QR+AIARA+++ P+
Sbjct: 108 GYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPK 167
Query: 520 ILLLDEATSALDSESERVVQEALDK--AVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVM 576
I+L DE ++LD ES + V + L G T I+ H++ + AD I ++ G+++
Sbjct: 168 IILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIV 227
Query: 577 ETGSHDELIQA 587
G EL
Sbjct: 228 FDGPASELTDE 238
|
Length = 258 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 1e-29
Identities = 121/535 (22%), Positives = 225/535 (42%), Gaps = 73/535 (13%)
Query: 377 IIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLR 436
++ +D +++P GK ++G +GSGKST++ L + G + W
Sbjct: 674 VLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRV-------------WAE 720
Query: 437 SQMGLVSQEPALFATSIKENILF-GKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGE 495
+ V Q+ + +++ NILF +EDA + +A + S + QL +T++GE
Sbjct: 721 RSIAYVPQQAWIMNATVRGNILFFDEEDA--ARLADAVRVSQLEADLAQLGGGLETEIGE 778
Query: 496 RGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSE-SERVVQEALDKAVVGRTTIII 554
+GV +SGGQK R+++ARA+ + LLD+ SALD+ ERVV+E A+ G+T ++
Sbjct: 779 KGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLA 838
Query: 555 AHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQTTTPDDNNNATMHSL 614
H++ + AD + + DG+V +GS + + LY +L D
Sbjct: 839 THQVHVVPRADYVVALGDGRVEFSGSSADF--MRTSLYATLAAELKENKD---------- 886
Query: 615 ASKSSNMDMNSTSSRRLSIVSLSSSANSFAQGRGASQSNEEDIKKLPVPSFRRLV----- 669
SK + D ++ Q A D L + RL+
Sbjct: 887 -SKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAE---GGDGAALD-AAAGRLMTREEK 941
Query: 670 ALNAPEWK--QATLG-CVGATLFGAVQPIYA----FAMGSMISVYFLTDHDEIKKKTSIY 722
A + W A L C G G V +A + S + + + K + Y
Sbjct: 942 ASGSVPWSTYVAYLRFCGGLHAAGFVLATFAVTELVTVSSGVWLSMWST-RSFKLSAATY 1000
Query: 723 AFCFLGLAVFTLVINIIQHYNFAY-MGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAI 781
+ +LG+ V ++ + +Y ++ + +L + + +FD G I
Sbjct: 1001 LYVYLGI-VLLGTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDT--TPLGRI 1057
Query: 782 CSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWRLALVMIAVQPLVII---- 837
+R ++D +++ + + L+Q + ++ + LV A QP V++
Sbjct: 1058 LNRFSRDIDILDNTLPMSYLYLLQCLFSICSSI-----------LVTSASQPFVLVALVP 1106
Query: 838 -CF-YARRVLLKSMSNKAIKAQAESSK-----LAAEAVSNLRTITAFSSQHRILK 885
+ Y R + + +N+ I+ +K L EA+ TITA+ H +++
Sbjct: 1107 CGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQ 1161
|
Length = 1560 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 1e-29
Identities = 71/231 (30%), Positives = 125/231 (54%), Gaps = 13/231 (5%)
Query: 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI 420
+EF+ V Y +++ + L I G+ + L+G SGSGK+T + ++ R P GEI
Sbjct: 1 IEFENVTKRYGGGKKAV--NNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEI 58
Query: 421 ILDGVSIDKLQLKWLRSQMGLVSQEPALFA-TSIKENI-LFGKEDASMEEVIEAAKASNA 478
+DG I + LR ++G V Q+ LF +++ENI L K +E I +A
Sbjct: 59 FIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIR-ERADEL 117
Query: 479 HNFIRQLPQQYDTQVGER-GVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERV 537
+ P ++ +R ++SGGQ+QR+ +ARA+ P +LL+DE ALD +
Sbjct: 118 LALVGLDPAEF----ADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQ 173
Query: 538 VQEALDK--AVVGRTTIIIAHRL-STIRNADVIAVVQDGQVMETGSHDELI 585
+QE + +G+T + + H + R AD IA++++G++++ G+ DE++
Sbjct: 174 LQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEIL 224
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 2e-29
Identities = 63/215 (29%), Positives = 88/215 (40%), Gaps = 60/215 (27%)
Query: 362 EFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEII 421
E + + F Y R + LT+ AG+ VALVG +GSGKST++ + P GE
Sbjct: 1 EIENLSFRYGGRT---ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGE-- 55
Query: 422 LDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNF 481
IL +D I
Sbjct: 56 -----------------------------------ILIDGKD------IAKLPLEELRRR 74
Query: 482 IRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEA 541
I +PQ +SGGQ+QR+A+ARA++ P +LLLDE TS LD S + E
Sbjct: 75 IGYVPQ------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLEL 122
Query: 542 LDKAVV-GRTTIIIAHRLSTIRNA-DVIAVVQDGQ 574
L + GRT II+ H A D + V++DG+
Sbjct: 123 LRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 2e-29
Identities = 56/218 (25%), Positives = 100/218 (45%), Gaps = 48/218 (22%)
Query: 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI 420
+E + + Y + D LT+ G+ L+G +G+GK+T+I ++ P GEI
Sbjct: 1 IEVRNLSKRYGKKT---ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEI 57
Query: 421 ILDGVSIDKLQLKWLRSQMGLVSQEPALFAT-SIKENILFGKEDASMEEVIEAAKASNAH 479
+ G I K + ++ ++G + +EP+L+ +++EN+
Sbjct: 58 KVLGKDIKKEPEE-VKRRIGYLPEEPSLYENLTVRENLKL-------------------- 96
Query: 480 NFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQ 539
SGG KQR+A+A+A++ P +L+LDE TS LD ES R
Sbjct: 97 ---------------------SGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFW 135
Query: 540 EALDKAVVGRTTIIIA-HRLSTIRN-ADVIAVVQDGQV 575
E L + TI+++ H L D +A++ +G++
Sbjct: 136 ELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 2e-29
Identities = 74/219 (33%), Positives = 112/219 (51%), Gaps = 20/219 (9%)
Query: 380 KDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLG-----GEIILDGVSI--DKLQL 432
K+ L I + A +G SG GKST++ R Y GEI+LDG +I K +
Sbjct: 30 KNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDI 89
Query: 433 KWLRSQMGLVSQEPALFATSIKENILFGKE------DASMEEVIEAAKASNAHNFIRQLP 486
LR+++G+V Q+P F SI +NI FG A M+E +E A A L
Sbjct: 90 ALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAA------LW 143
Query: 487 QQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV 546
+ ++ + G +SGGQ+QR+ IAR I P +LLLDE SALD S ++E + +
Sbjct: 144 NEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK 203
Query: 547 VGRTTIIIAHRL-STIRNADVIAVVQDGQVMETGSHDEL 584
T +I+ H + R +D A + G+++E G+ D +
Sbjct: 204 QDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTI 242
|
Length = 260 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 123 bits (312), Expect = 3e-29
Identities = 84/402 (20%), Positives = 166/402 (41%), Gaps = 49/402 (12%)
Query: 758 RMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTAL---LVQTISAVTIAF 814
R+LS + V F++ E S A+ R + +++ LV D AL ++ I+ +A
Sbjct: 88 RVLSAL---RVRLFEKLEPLSPALLLRY-RSGDLLNRLVADVDALDNLYLRVIAPAVVAL 143
Query: 815 TMGL-------FIAWRLAL-VMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAE 866
+ F + LAL + + + L++I + + +A +
Sbjct: 144 VLIAVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTD 203
Query: 867 AVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSWYAGIGLAFSQSLASCTWALDFWY 926
V + F ++ LE + + +Q+ + G+ A +A +
Sbjct: 204 WVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLW 263
Query: 927 GGRLIADGYISSK----------ALFETFMIL-----VSTGRVIADAGSMTTDIAKGSDA 971
+ G ++ A E F L G+VIA A +
Sbjct: 264 MAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLN--------- 314
Query: 972 VGSVFAVMDRYTKIEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGK 1031
++D+ ++ D + + +EL+NV F YP + + F++ + G+
Sbjct: 315 -----DILDQKPEVTFPDEQTATTGQA---LELRNVSFTYPGQQ-TKALKNFNLTLAQGE 365
Query: 1032 STALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFA 1091
A++G+SGSGKST++ L+ +DP +G + ++ +I S ++LR I++++Q LF+
Sbjct: 366 KVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFS 425
Query: 1092 GTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133
GT+R+N+ D DE E+ A + + +G +T
Sbjct: 426 GTLRDNLRLANPDASDE-ELWAALQQVGLEKLLESAPDGLNT 466
|
Length = 573 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 5e-29
Identities = 59/133 (44%), Positives = 82/133 (61%), Gaps = 4/133 (3%)
Query: 1002 IELQNVHFAYPARPD-VMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGD 1060
I ++V F Y +PD +I + S++I+ G+ +VG+SGSGKST+ LI+RFY P G
Sbjct: 1 ITFEHVRFRY--KPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGR 58
Query: 1061 VKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANA 1120
V +D D+ LRR + +V QE LF +IR+NIA A + ++EAAK A A
Sbjct: 59 VLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIAL-ADPGMSMERVIEAAKLAGA 117
Query: 1121 HDFIAGLNEGYDT 1133
HDFI+ L EGYDT
Sbjct: 118 HDFISELPEGYDT 130
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 5e-29
Identities = 72/227 (31%), Positives = 118/227 (51%), Gaps = 25/227 (11%)
Query: 380 KDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSI---DKLQLKWL- 435
D L I G+ ++G SGSGKST + +L R P G+I +DG +I ++L+ +
Sbjct: 10 NDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVR 69
Query: 436 RSQMGLVSQEPALFA-TSIKENILFGKEDASM------EEVIEAAKASNAHNFIRQLPQQ 488
R ++G+V Q+ ALF +I +N G E E+ +E K + + P +
Sbjct: 70 RKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDE 129
Query: 489 YDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDK--AV 546
+SGG +QR+ +ARA+ P ILL+DEA SALD +Q+ L K A
Sbjct: 130 -----------LSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQAT 178
Query: 547 VGRTTIIIAHRL-STIRNADVIAVVQDGQVMETGSHDELIQAESGLY 592
+ +T + I H L IR D I +++ G++++ G+ DE+++ + Y
Sbjct: 179 LQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEY 225
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 8e-29
Identities = 81/328 (24%), Positives = 144/328 (43%), Gaps = 41/328 (12%)
Query: 802 LLVQTISAVTIAFTMGLFIAW---RLA-------LVMIAVQPLVIICFYARRVLLKSMSN 851
L+ ++A+ + + + +++ LA L+++ + PL+ FY L K
Sbjct: 137 LISPLVAALVVILVLTIGLSFFDLTLALTLGGILLLLLLLLPLL---FYR---LGKKPGQ 190
Query: 852 KAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSWYAGIGLAF 911
+A+ E + +T F ++ R + LE+ +Q + Q A +
Sbjct: 191 DLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQ---QWLAAQRRQANLT-GL 246
Query: 912 SQSL----ASCTWALDFWYGGRLIADGYISSK--ALFETFMILVSTGRVIADAGSMTTDI 965
SQ+L T L W + ALF F L + +
Sbjct: 247 SQALMILANGLTVVLMLWLAAGGVGGNAQPGALIALF-VFAALAAF--------EALMPV 297
Query: 966 AKGSDAVGSVFAVMDRYTKI-----EPEDPEGHQPERITGNIELQNVHFAYPARPDVMIF 1020
A +G V A R +I E P ++ L NV F YP +P +
Sbjct: 298 AGAFQHLGQVIASARRINEITEQKPEVTFPTTSTAAADQVSLTLNNVSFTYPDQPQ-PVL 356
Query: 1021 EGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHI 1080
+G S++I+AG+ AL+G++G GKST++ L+ R +DP +G++ ++ + I Y +LR+ I
Sbjct: 357 KGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAI 416
Query: 1081 ALVSQEPTLFAGTIRENIAYGASDEIDE 1108
++VSQ LF+ T+R+N+ A + DE
Sbjct: 417 SVVSQRVHLFSATLRDNLLLAAPNASDE 444
|
Length = 574 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 2e-28
Identities = 68/137 (49%), Positives = 82/137 (59%), Gaps = 5/137 (3%)
Query: 998 ITGNIELQNVHFAY-PARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDP 1056
G + NV FAY P RP I G S I GK+ A+VG+SG+GKSTI+ L+ RFYD
Sbjct: 259 RLGAVAFINVSFAYDPRRP---ILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDV 315
Query: 1057 LKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAK 1116
G + ID +DIR +SLRR I +V Q+ LF TI NI YG D E E+ AA+
Sbjct: 316 NSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAE-EVGAAAE 374
Query: 1117 AANAHDFIAGLNEGYDT 1133
AA HDFI L EGYDT
Sbjct: 375 AAQIHDFIQSLPEGYDT 391
|
Length = 497 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 2e-28
Identities = 67/257 (26%), Positives = 112/257 (43%), Gaps = 35/257 (13%)
Query: 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKST----VIALLQRFYAP 415
EVE V+FA + +D + G+ + +VG SGSGKST ++ LL
Sbjct: 7 EVENLTVEFATDGGRVPAV-RDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRI 65
Query: 416 LGGEIILDGVSIDKLQLKWLRSQMG----LVSQEP-ALFA------TSIKENILF---GK 461
GE+ILDG + L + +R G ++ Q+P I+E + G
Sbjct: 66 TSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGS 125
Query: 462 EDASMEEVIEAAKASNAHN--FIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPR 519
+ + +E + + + P Q SGG +QR+ IA A+ P+
Sbjct: 126 RAEARKRAVELLEQVGLPDPERRDRYPHQL-----------SGGMRQRVMIAMALALKPK 174
Query: 520 ILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVM 576
+L+ DE T+ALD ++ + + L G + I H L + AD + V+ G+++
Sbjct: 175 LLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIV 234
Query: 577 ETGSHDELIQAESGLYT 593
ETG +E++ YT
Sbjct: 235 ETGPTEEILSNPQHPYT 251
|
Length = 539 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 116 bits (294), Expect = 2e-28
Identities = 60/236 (25%), Positives = 108/236 (45%), Gaps = 37/236 (15%)
Query: 384 LTIPAGKTVALVGGSGSGKST----VIALLQRFYAP-LGGEIILDGVSIDKL----QLKW 434
+ G+ + +VG SGSGKS ++ LL + A +GGEI+ DG + L K
Sbjct: 26 FELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKI 85
Query: 435 LRSQMGLVSQEP--AL---------FATSIKENILFGKEDASMEEVIEAAKA---SNAHN 480
++ ++ Q+P +L A ++ + + + E IE + +
Sbjct: 86 RGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPER 145
Query: 481 FIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQE 540
++ P ++SGG +QR+ IA A+ P++L+ DE T+ALD + + +
Sbjct: 146 RLKSYP-----------HELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILD 194
Query: 541 ALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQAESGLYT 593
L + G I+I H L + AD +AV+ G+++E G +E+ + YT
Sbjct: 195 LLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFKNPKHPYT 250
|
Length = 316 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 117 bits (294), Expect = 3e-28
Identities = 75/246 (30%), Positives = 115/246 (46%), Gaps = 47/246 (19%)
Query: 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKST---VIALLQRFYAPL 416
+ +F + D L I +G+ VAL+G SG+GKST +IA L+ P
Sbjct: 4 RINNVKKRF--GAFGA---LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET---PD 55
Query: 417 GGEIILDG-VSIDKLQLKWLRSQMGLVSQEPALFA-TSIKENILFG-----------KED 463
G I L+G V D L ++G V Q ALF ++ +NI FG +
Sbjct: 56 AGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIR 115
Query: 464 ASMEEVIEAAKASN-AHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILL 522
A +EE++ + A + QL SGGQ+QR+A+ARA+ P++LL
Sbjct: 116 ARVEELLRLVQLEGLADRYPAQL---------------SGGQRQRVALARALAVEPKVLL 160
Query: 523 LDEATSALD----SESERVVQEALDKAVVGRTTIIIAHRLS-TIRNADVIAVVQDGQVME 577
LDE ALD E R +++ D+ +G TT+ + H + AD + V+ G++ +
Sbjct: 161 LDEPFGALDAKVRKELRRWLRKLHDR--LGVTTVFVTHDQEEALELADRVVVLNQGRIEQ 218
Query: 578 TGSHDE 583
G DE
Sbjct: 219 VGPPDE 224
|
Length = 345 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 4e-28
Identities = 71/239 (29%), Positives = 123/239 (51%), Gaps = 28/239 (11%)
Query: 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI 420
+EF+ V Y ++ D LTI G+ + L+G SGSGK+T + ++ R P GEI
Sbjct: 2 IEFENVSKRYGNK---KAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEI 58
Query: 421 ILDGVSIDKLQLKWLRSQMGLVSQEPALFA-TSIKENILF-------GKE--DASMEEVI 470
++DG I L LR ++G V Q+ LF ++ ENI KE +E++
Sbjct: 59 LIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELL 118
Query: 471 EAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSAL 530
+ + + + P + +SGGQ+QR+ +ARA+ P ILL+DE AL
Sbjct: 119 DLVGLDPSE-YADRYPHE-----------LSGGQQQRVGVARALAADPPILLMDEPFGAL 166
Query: 531 DSESERVVQEALDK--AVVGRTTIIIAHRLS-TIRNADVIAVVQDGQVMETGSHDELIQ 586
D + + +QE + + +G+T + + H + ++ AD IAV+ G++++ + DE++
Sbjct: 167 DPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILA 225
|
Length = 309 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 117 bits (294), Expect = 6e-28
Identities = 72/220 (32%), Positives = 116/220 (52%), Gaps = 25/220 (11%)
Query: 380 KDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLR--- 436
D L + G+ ++G SGSGKST++ LL R P GEI++DG I KL LR
Sbjct: 45 NDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELR 104
Query: 437 -SQMGLVSQEPALFA-TSIKENILFGKEDASM------EEVIEAAKASNAHNFIRQLPQQ 488
++ +V Q AL ++ EN+ FG E + E +EA + + + P +
Sbjct: 105 RKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNE 164
Query: 489 YDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDK--AV 546
+SGG +QR+ +ARA+ P ILL+DEA SALD +Q+ L + A
Sbjct: 165 -----------LSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAK 213
Query: 547 VGRTTIIIAHRLS-TIRNADVIAVVQDGQVMETGSHDELI 585
+ +T + I H L +R D IA+++DG++++ G+ +E++
Sbjct: 214 LKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEIL 253
|
Length = 386 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 6e-28
Identities = 61/207 (29%), Positives = 98/207 (47%), Gaps = 32/207 (15%)
Query: 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI 420
+E + V ++ + +D L++ G+ VA++G SG GKST++ L+ P GE+
Sbjct: 4 LEIEGVSKSFGGVE---VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV 60
Query: 421 ILDGVSIDKLQLKWLRSQMGLVSQEPALFA-TSIKENILFGKEDASM--EEVIEAAKASN 477
+LDG + +G V QE AL ++ +N+ G E E E AK
Sbjct: 61 LLDGRPVTGP-----GPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKE-- 113
Query: 478 AHNFIRQLPQQYDTQVGERGV------QMSGGQKQRIAIARAIIKAPRILLLDEATSALD 531
VG G Q+SGG +QR+AIARA+ P++LLLDE ALD
Sbjct: 114 -----------LLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALD 162
Query: 532 SESERVVQEALDKAV--VGRTTIIIAH 556
+ + +Q+ L + +T +++ H
Sbjct: 163 ALTREELQDELLRLWEETRKTVLLVTH 189
|
Length = 248 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 6e-28
Identities = 72/234 (30%), Positives = 112/234 (47%), Gaps = 26/234 (11%)
Query: 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI 420
+E + V Y + L I G+ L+G SG GK+T++ L+ F P GEI
Sbjct: 1 IELENVSKFYGG---FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEI 57
Query: 421 ILDGVSIDKLQLKWLRSQMGLVSQEPALFA-TSIKENILFG------KEDASMEEVIEAA 473
+LDG I L + + V Q ALF ++ ENI FG + E V EA
Sbjct: 58 LLDGKDI--TNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEAL 115
Query: 474 KASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSE 533
+ + P Q +SGGQ+QR+AIARA++ P++LLLDE ALD +
Sbjct: 116 DLVQLEGYANRKPSQ-----------LSGGQQQRVAIARALVNEPKVLLLDEPLGALDLK 164
Query: 534 SERVVQEALDK--AVVGRTTIIIAHRLS-TIRNADVIAVVQDGQVMETGSHDEL 584
+ +Q L + +G T + + H + +D IAV+ G++ + G+ +E+
Sbjct: 165 LRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEI 218
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 7e-28
Identities = 59/196 (30%), Positives = 92/196 (46%), Gaps = 23/196 (11%)
Query: 370 YPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSID- 428
YP PE + K G+ +AL+G +G+GKST++ L P G +++DG +D
Sbjct: 1 YPGGPE--VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDY 58
Query: 429 -KLQLKWLRSQMGLVSQEP--ALFATSIKENILFG------KEDASMEEVIEAAKASNAH 479
+ L R ++GLV Q+P LFA + +++ FG E V EA A A
Sbjct: 59 SRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGAS 118
Query: 480 NFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQ 539
+ +SGG+K+R+AIA A+ P +LLLDE T+ LD +
Sbjct: 119 GLRERPTHC-----------LSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQML 167
Query: 540 EALDKAVVGRTTIIIA 555
L + T++I+
Sbjct: 168 AILRRLRAEGMTVVIS 183
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 1e-27
Identities = 73/216 (33%), Positives = 114/216 (52%), Gaps = 25/216 (11%)
Query: 381 DFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440
F LT+PAG+ VA++G SG+GKST++ L+ F P GEI+++GV D +
Sbjct: 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGV--DHTASPPAERPVS 74
Query: 441 LVSQEPALFA-TSIKENILFG-----KEDASMEEVIEAAKAS-NAHNFIRQLPQQYDTQV 493
++ QE LFA ++ +NI G K +A E +EAA A F+++LP
Sbjct: 75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG------ 128
Query: 494 GERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVV---GRT 550
++SGGQ+QR+A+AR +++ ILLLDE SALD + R AL + T
Sbjct: 129 -----ELSGGQRQRVALARCLVREQPILLLDEPFSALD-PALRAEMLALVSQLCDERKMT 182
Query: 551 TIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELI 585
+++ H AD + + +G++ GS EL+
Sbjct: 183 LLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELL 218
|
Length = 231 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 1e-27
Identities = 61/207 (29%), Positives = 96/207 (46%), Gaps = 47/207 (22%)
Query: 384 LTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVS 443
+I G+T+ LVG SG GKST+ L+ P GEI+ +G I KL
Sbjct: 34 FSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS------------ 81
Query: 444 QEPALFATSIKENILFGKEDASMEEVIEAA--KASNAHNFIRQLPQQYDTQVGERGVQMS 501
KE + + E++E + + +L S
Sbjct: 82 ----------KE-----ERRERVLELLEKVGLPEEFLYRYPHEL---------------S 111
Query: 502 GGQKQRIAIARAIIKAPRILLLDEATSALD-SESERVVQEALD-KAVVGRTTIIIAHRLS 559
GGQ+QRI IARA+ P++++ DE SALD S +++ D + +G T + I+H LS
Sbjct: 112 GGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLS 171
Query: 560 TIRN-ADVIAVVQDGQVMETGSHDELI 585
+R +D IAV+ G+++E G +E+
Sbjct: 172 VVRYISDRIAVMYLGKIVEIGPTEEVF 198
|
Length = 268 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 2e-27
Identities = 67/210 (31%), Positives = 103/210 (49%), Gaps = 22/210 (10%)
Query: 379 FKDFCLTIP---AGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGV----SIDKLQ 431
DF L I + + G SG+GKST++ + P GG I+L+G S K+
Sbjct: 10 LPDFTLKIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKIN 69
Query: 432 LKWLRSQMGLVSQEPALFA-TSIKENILFG-KEDASMEEVIEAAKASNAHNFIRQLPQQY 489
L + ++GLV Q+ ALF +++EN+ FG K + E+ I + +
Sbjct: 70 LPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGL-------- 121
Query: 490 DTQVGERGV-QMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDK--AV 546
+ R Q+SGG+KQR+A+ARA+ P +LLLDE SALD + L +
Sbjct: 122 -DHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKN 180
Query: 547 VGRTTIIIAHRLSTI-RNADVIAVVQDGQV 575
+ I + H LS AD I V++DG++
Sbjct: 181 LNIPVIFVTHDLSEAEYLADRIVVMEDGRL 210
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 2e-27
Identities = 77/244 (31%), Positives = 113/244 (46%), Gaps = 28/244 (11%)
Query: 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI 420
+ FK V F Y S S KD IP G+ ++VG +GSGKST+ L+ GEI
Sbjct: 8 IVFKNVSFQYQS-DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEI 66
Query: 421 ILDGVSIDKLQLKWLRSQMGLVSQEPA-LFATSI-KENILFGKEDASM------EEVIEA 472
+ +I + LR +G+V Q P F SI K ++ FG E+ ++ V EA
Sbjct: 67 FYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEA 126
Query: 473 AKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDS 532
K + P +SGGQKQR+AIA + P +++LDEATS LD
Sbjct: 127 LKQVDMLERADYEPN-----------ALSGGQKQRVAIAGVLALNPSVIILDEATSMLDP 175
Query: 533 ESE----RVVQEA-LDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQA 587
++ +V++ + + T I I H LS AD + V+ G V + G+ E+
Sbjct: 176 DARQNLLDLVRKVKSEHNI---TIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232
Query: 588 ESGL 591
L
Sbjct: 233 AEEL 236
|
Length = 269 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 3e-27
Identities = 46/135 (34%), Positives = 73/135 (54%), Gaps = 5/135 (3%)
Query: 1000 GNIELQNVHFAY-PARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLK 1058
G+IE +NV Y P P V+ + S I+ G+ +VG++GSGKS+++ + R +
Sbjct: 1 GDIEFKNVSLRYRPNLPPVL--KNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSS 58
Query: 1059 GDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAA 1118
G + ID DI L LR I+++ Q+P LF+GTIR N+ E + E+ +A +
Sbjct: 59 GSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLD--PFGEYSDEELWQALERV 116
Query: 1119 NAHDFIAGLNEGYDT 1133
+F+ L G DT
Sbjct: 117 GLKEFVESLPGGLDT 131
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 109 bits (276), Expect = 5e-27
Identities = 71/236 (30%), Positives = 117/236 (49%), Gaps = 27/236 (11%)
Query: 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI 420
+ F+ V AYP E +D IP G+ V L G SG+GKST++ L+ P G+I
Sbjct: 2 IRFENVSKAYPGGRE--ALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKI 59
Query: 421 ILDGVSIDKL---QLKWLRSQMGLVSQEPALFAT-SIKENILF-----GKEDASMEE-VI 470
+++G + +L ++ +LR Q+G+V Q+ L ++ EN+ GK + V
Sbjct: 60 LVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVS 119
Query: 471 EAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSAL 530
E + R LP Q+SGG++QR+AIARAI+ P +LL DE T L
Sbjct: 120 EVLDLVGLKHKARALP-----------SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNL 168
Query: 531 DSE-SERVVQEALDKAVVGRTTIIIAHRLSTI--RNADVIAVVQDGQVMETGSHDE 583
D + S +++ + +G T ++ H L + V+A ++DG+++ S
Sbjct: 169 DPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLA-LEDGRLVRDESRGV 223
|
Length = 223 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 1e-26
Identities = 105/468 (22%), Positives = 189/468 (40%), Gaps = 40/468 (8%)
Query: 684 VGATLFGAVQPIYAFAMGSMISVYFLTD--HDEIKKKTSIYAFCFLGLAVFTLVINIIQH 741
V + L + I A ++++ LT ++ + L V + ++
Sbjct: 3 VISALLAVLSGIAIIAQAALLA-DILTKLIEGQLFQSLLPLLILLLIALVLRAFLAWLRE 61
Query: 742 YNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTA 801
+ +R+ +L K+ ++G + +G+ + + +
Sbjct: 62 RLGYRAAAKVRASLRQLVLDKL--AKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLP 119
Query: 802 LLVQTISAVTIAFTMGLFIAWRLALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESS 861
+ + + F W AL+++ PL+ + + K S K A A S
Sbjct: 120 QMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILVGLAAKDASEKQFSALARLS 179
Query: 862 KLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSWYAGIGLAFSQSLASCTWA 921
+ + L T+ AF + + K + R+ ++ + +AF S
Sbjct: 180 GHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSV-----LRIAFLSSAV----- 229
Query: 922 LDFW-YGG----------RLIADGYISSKALFETFMILVSTGRV---IADAGSMTTDIAK 967
L+F+ Y RL+ +G ++ LF +L+ + D GS A
Sbjct: 230 LEFFAYLSIALVAVYIGFRLLGEGDLT---LFAGLFVLILAPEFFQPLRDLGSFFHAAAA 286
Query: 968 GSDAVGSVFAVMDR--YTKIEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSI 1025
G A +F +++ T E E I I L+N+ F YP + ++
Sbjct: 287 GEAAADKLFTLLESPVATPGSGEKAEVANEPPIE--ISLENLSFRYPDGKPAL--SDLNL 342
Query: 1026 KIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQ 1085
I+AG+ TALVG SG+GKST++ L+ F P +G+++++ D+R + R+ I+ VSQ
Sbjct: 343 TIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQ 402
Query: 1086 EPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133
P LFAGTIRENI D + EI+ A A +F+ +G DT
Sbjct: 403 NPYLFAGTIRENILLARPD-ASDEEIIAALDQAGLLEFVPK-PDGLDT 448
|
Length = 559 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 1e-26
Identities = 71/232 (30%), Positives = 111/232 (47%), Gaps = 39/232 (16%)
Query: 380 KDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ- 438
LT+ G+ AL+G +G+GKST++ +L Y P GEI++DG + + +
Sbjct: 25 DGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPR--DALA 82
Query: 439 --MGLVSQEPALFAT-SIKENILFGKE---------DASMEEVIEAAKASNAHNFIRQLP 486
+ V QE +L S+ ENI G+E +M A +
Sbjct: 83 AGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRR--RARELLARLGLDIDP- 139
Query: 487 QQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALD-SESER---VVQEAL 542
DT VG+ +S Q+Q + IARA+ R+L+LDE T+AL E+ER +++
Sbjct: 140 ---DTLVGD----LSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLK 192
Query: 543 DKAVVGRTTIIIAHRLSTI-RNADVIAVVQDGQVMETG------SHDELIQA 587
+ G I I+HRL + AD I V++DG+V+ T S DEL++
Sbjct: 193 AQ---GVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAETSEDELVRL 241
|
Length = 500 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 1e-26
Identities = 67/226 (29%), Positives = 121/226 (53%), Gaps = 20/226 (8%)
Query: 375 ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRF--YAP---LGGEIILDGVSI-- 427
E K+ + I + A++G SG GK+T++ + R + P + G+I G I
Sbjct: 15 EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYD 74
Query: 428 DKLQLKWLRSQMGLVSQEPALFATSIKENILFG------KEDASMEEVIEAAKASNAHNF 481
+L + R ++G+V Q+P F SI +N+ FG K ++ ++E + A
Sbjct: 75 PQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAA--- 131
Query: 482 IRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEA 541
L + +++ + G ++SGGQ+QR+ IARA+ P ++LLDE TSALD + + +++
Sbjct: 132 ---LWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKL 188
Query: 542 LDKAVVGRTTIIIAHRLS-TIRNADVIAVVQDGQVMETGSHDELIQ 586
L++ T +I+ H + IR AD IA + G+++E G E+++
Sbjct: 189 LEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVE 234
|
Length = 250 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 107 bits (271), Expect = 3e-26
Identities = 62/224 (27%), Positives = 105/224 (46%), Gaps = 23/224 (10%)
Query: 370 YPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDK 429
Y D L + G+ L+G +G+GK+T + +L P G ++G SI
Sbjct: 10 YKKGT-KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRT 68
Query: 430 LQLKWLRSQMGLVSQEPALFAT-SIKENILF-----GKEDASMEEVIEAAKASNAHNFIR 483
K R +G Q ALF +++E++ F G + ++E +E +R
Sbjct: 69 -DRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVE--------LLLR 119
Query: 484 Q--LPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEA 541
L + + + +SGG K+++++A A+I P +LLLDE TS LD S R + +
Sbjct: 120 VLGLTDKANKRAR----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDL 175
Query: 542 LDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584
+ + GR+ I+ H + D IA++ DG++ GS EL
Sbjct: 176 ILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 3e-26
Identities = 72/237 (30%), Positives = 122/237 (51%), Gaps = 31/237 (13%)
Query: 361 VEFKCVQFAYPSRPESII-FKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGE 419
+E K + +P +I + L IPAG+ ++G SG+GKST+I + P G
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 420 IILDGVSIDKL---QLKWLRSQMGLVSQEPALFAT-SIKENILFGKE---------DASM 466
+++DG + L +L+ R Q+G++ Q L ++ ++ +N+ E A +
Sbjct: 62 VLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARV 121
Query: 467 EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEA 526
E++E S+ + Y Q +SGGQKQR+AIARA+ P++LL DEA
Sbjct: 122 TELLELVGLSDKADR-------YPAQ-------LSGGQKQRVAIARALASNPKVLLCDEA 167
Query: 527 TSALDSESERVVQEALDK--AVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGS 580
TSALD + R + E L +G T ++I H + ++ D +AV+ G+++E G+
Sbjct: 168 TSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGT 224
|
Length = 343 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 6e-26
Identities = 63/216 (29%), Positives = 120/216 (55%), Gaps = 6/216 (2%)
Query: 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVI-ALLQRFYAPLGGEIILDGVSIDKLQLKWLR 436
+ ++ +I G+ V L+G +GSGKST++ A L+ G+I +DGVS + + L+ R
Sbjct: 19 VLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE--GDIQIDGVSWNSVPLQKWR 76
Query: 437 SQMGLVSQEPALFATSIKENI-LFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGE 495
G++ Q+ +F+ + ++N+ +GK S EE+ + A+ + I Q P Q D + +
Sbjct: 77 KAFGVIPQKVFIFSGTFRKNLDPYGKW--SDEEIWKVAEEVGLKSVIEQFPGQLDFVLVD 134
Query: 496 RGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIA 555
G +S G KQ + +AR+++ +ILLLDE ++ LD + +V+++ L +A T I+
Sbjct: 135 GGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSE 194
Query: 556 HRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGL 591
HR+ + V+++ +V + S +L+ +S
Sbjct: 195 HRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHF 230
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 6e-26
Identities = 72/251 (28%), Positives = 122/251 (48%), Gaps = 32/251 (12%)
Query: 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI 420
+ + + F YP + KD ++ G+ VA+VG +GSGKST+ LL P G I
Sbjct: 6 IRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTI 64
Query: 421 ILDGVSIDKLQLKWLRSQMGLVSQEP--ALFATSIKENILFGKEDASM------EEVIEA 472
+ G+ + + + +R Q+G+V Q P ++++++ FG E+ + E V +A
Sbjct: 65 TVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQA 124
Query: 473 AKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDS 532
+ +F+ + P + +SGGQKQR+AIA + P I++LDEATS LD
Sbjct: 125 LRQVGMEDFLNREPHR-----------LSGGQKQRVAIAGVLALQPDIIILDEATSMLDP 173
Query: 533 ESERVVQEALD-----KAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQA 587
+E L+ K G T + I H L AD + V+ G+++E G+ +E+ +
Sbjct: 174 RGR---REVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFK- 229
Query: 588 ESGLYTSLVRL 598
L +
Sbjct: 230 ---SGHMLQEI 237
|
Length = 279 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 6e-26
Identities = 67/230 (29%), Positives = 112/230 (48%), Gaps = 32/230 (13%)
Query: 373 RPESIIFKDFCL-----TIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSI 427
S +K+F L + G ++G +GSGKS ++ + F P G+I+L+G I
Sbjct: 4 ENLSKDWKEFKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDI 63
Query: 428 DKLQLKWLRSQMGLVSQEPALFA-TSIKENILFG--------KEDASMEEVIEAAKASNA 478
L + + V Q ALF ++ +NI +G KE +V+E A+
Sbjct: 64 T--NLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIE--RKVLEIAEMLG- 118
Query: 479 HNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVV 538
I L + +SGG++QR+AIARA++ P+ILLLDE SALD ++ +
Sbjct: 119 ---IDHLLNRKPET-------LSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKL 168
Query: 539 QEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELI 585
+E L K G T + + H AD +A++ +G++++ G +E+
Sbjct: 169 REELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVF 218
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 6e-26
Identities = 71/231 (30%), Positives = 111/231 (48%), Gaps = 24/231 (10%)
Query: 380 KDFCLTIPAGKTVALVGGSGSGKSTVIALLQRF-----YAPLGGEIILDGVSIDK--LQL 432
K + K AL+G SGSGKST + L R A + G+I+ G+ I++ + +
Sbjct: 37 KGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINV 96
Query: 433 KWLRSQMGLVSQEPALFATSIKENILFG------KEDASMEEVIEAAKASNAHNFIRQ-- 484
+R +G+V Q P FA SI ENI F K+ ++E++E + ++Q
Sbjct: 97 YEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETS--------LKQAA 148
Query: 485 LPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDK 544
L Q + + + +SGGQ+QR+ IARAI P ILL+DE SALD S ++E + +
Sbjct: 149 LWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFE 208
Query: 545 AVVGRTTIIIAHRLS-TIRNADVIAVVQDGQVMETGSHDELIQAESGLYTS 594
T II+ H + R +D A G ++E + T+
Sbjct: 209 LKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIFTNPKLQSTN 259
|
Length = 267 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 7e-26
Identities = 68/219 (31%), Positives = 113/219 (51%), Gaps = 20/219 (9%)
Query: 380 KDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFY-----APLGGEIILDGVSI--DKLQL 432
K L I + AL+G SG GKST + L R + GE++LDG I + +
Sbjct: 20 KKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79
Query: 433 KWLRSQMGLVSQEPALFATSIKENILFG------KEDASMEEVIEAAKASNAHNFIRQLP 486
LR ++G+V Q+P F SI +N+ +G K+ ++E++E + A L
Sbjct: 80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAA------LW 133
Query: 487 QQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV 546
+ ++ + + +SGGQ+QR+ IARA+ P +LL+DE TSALD S ++E + +
Sbjct: 134 DEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK 193
Query: 547 VGRTTIIIAHRL-STIRNADVIAVVQDGQVMETGSHDEL 584
T +I+ H + R +D A +G+++E G +L
Sbjct: 194 KDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDL 232
|
Length = 250 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 114 bits (286), Expect = 8e-26
Identities = 95/460 (20%), Positives = 192/460 (41%), Gaps = 55/460 (11%)
Query: 697 AFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINIIQHYNFAYMGEHLTKRIR 756
++ + +I Y ++ I + + + +++ IQ + +G+ L+ I
Sbjct: 176 SYYLQKIIDTYI---PHKMMGTLGIISIGLIIAYIIQQILSYIQIFLLNVLGQRLSIDII 232
Query: 757 ERMLSKILTFEVGWFDQDENSSGAICSRLAKDAN--------VVRSLVGDRTALLVQTIS 808
+ + + +F +G I SR DA+ + SL D L+ +
Sbjct: 233 LSYIKHLFELPMSFFST--RRTGEIVSRFT-DASSIIDALASTILSLFLDMWILV--IVG 287
Query: 809 AVTIAFTMGLFIAWRLALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAV 868
+ M LF+ L+L+ I V ++II F +++ A++A A + E +
Sbjct: 288 LFLVRQNMLLFL---LSLLSIPVYAVIIILFKR---TFNKLNHDAMQANAVLNSSIIEDL 341
Query: 869 SNLRTITAFSSQ--------HRILKMLEKAQQGPRRESIRQSWYAGIGLAFSQSLASCTW 920
+ + TI + +S+ L K+ + + + +Q+ A L + +
Sbjct: 342 NGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKAVTKLILNVVI----- 396
Query: 921 ALDFWYGGRLIADGYISSKALFETFMILVST-GRVIADAGSMTTDIAKGSDA---VGSVF 976
W G L+ G ++ L TF L+S + + ++ + A + V+
Sbjct: 397 ---LWTGAYLVMRGKLTLGQLI-TFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVY 452
Query: 977 AVMDRYTKIEPEDPEGHQP---ERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKST 1033
V + E + + G+I + +V ++Y +++ S+ I+ T
Sbjct: 453 LV-------DSEFINKKKRTELNNLNGDIVINDVSYSYGYGSNIL--SDISLTIKMNSKT 503
Query: 1034 ALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGT 1093
+VG SGSGKST+ L+ F+ G++ ++ ++ +LR+ I + QEP +F+G+
Sbjct: 504 TIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGS 563
Query: 1094 IRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133
I EN+ GA + + + EI A + A D I + GY T
Sbjct: 564 ILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQT 603
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 109 bits (273), Expect = 1e-25
Identities = 68/210 (32%), Positives = 112/210 (53%), Gaps = 25/210 (11%)
Query: 394 LVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFA-TS 452
L+G SG GK+T++ LL F P G I+LDG + + LR + +V Q ALF +
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVP-PHLRH-INMVFQSYALFPHMT 58
Query: 453 IKENILFG----KEDAS--MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQ 506
++EN+ FG K + V+EA + F + P Q+SGGQ+Q
Sbjct: 59 VEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKP-----------HQLSGGQQQ 107
Query: 507 RIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV---VGRTTIIIAHRLS-TIR 562
R+A+ARA++ P+ILLLDE SALD + +Q L K + +G T + + H +
Sbjct: 108 RVALARALVFKPKILLLDEPLSALDKKLRDQMQLEL-KTIQEQLGITFVFVTHDQEEAMT 166
Query: 563 NADVIAVVQDGQVMETGSHDELIQAESGLY 592
+D IA+++ G++ + G+ +E+ + + L+
Sbjct: 167 MSDRIAIMRKGKIAQIGTPEEIYEEPANLF 196
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 1e-25
Identities = 66/219 (30%), Positives = 110/219 (50%), Gaps = 19/219 (8%)
Query: 379 FKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFY-----APLGGEIILDGVSI-DKLQL 432
K L IPA + AL+G SG GKST++ L R + G++ +DG I + +
Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV 78
Query: 433 KWLRSQMGLVSQEPALFATSIKENILFG------KEDASMEEVIEAAKASNAHNFIRQLP 486
LR ++G+V Q+P F SI EN+ +G K+ ++EV+E + A L
Sbjct: 79 ADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAA------LW 132
Query: 487 QQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV 546
+ ++ +SGGQ+QR+ IAR I P ++L+DE TSALD + ++E +++
Sbjct: 133 DEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELK 192
Query: 547 VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584
T +I+ H + R +D A G+++E +
Sbjct: 193 KNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVI 231
|
Length = 249 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 1e-25
Identities = 72/238 (30%), Positives = 123/238 (51%), Gaps = 21/238 (8%)
Query: 361 VEFKCVQFAY----PSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPL 416
+ F V + Y P ++I D GK A+VG +GSGKST+I + P
Sbjct: 3 IRFDNVSYTYQKGTPYEHQAI--HDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT 60
Query: 417 GGEIILDGVSI-----DKLQLKWLRSQMGLVSQ--EPALFATSIKENILFGKEDASMEEV 469
G + +D ++I DK ++ +R ++G+V Q E LF +++ I+FG ++ M
Sbjct: 61 TGTVTVDDITITHKTKDK-YIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMN-- 117
Query: 470 IEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSA 529
++ K + AH + L D + + QMSGGQ ++IAI + P I++LDE T+
Sbjct: 118 LDEVK-NYAHRLLMDLGFSRDV-MSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAG 175
Query: 530 LDSESERVVQEALDKAVV--GRTTIIIAHRLSTI-RNADVIAVVQDGQVMETGSHDEL 584
LD +S+R V L +T I+++H ++ + R AD + V+++G ++ S EL
Sbjct: 176 LDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKEL 233
|
Length = 286 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 2e-25
Identities = 78/231 (33%), Positives = 123/231 (53%), Gaps = 25/231 (10%)
Query: 376 SIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWL 435
S+ KD L I G+ ++G SGSGKST++ LL R P G++++DGV I K+ L
Sbjct: 41 SLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAEL 100
Query: 436 RS----QMGLVSQEPALFA-TSIKENILFGKEDASM------EEVIEAAKASNAHNFIRQ 484
R ++ +V Q AL ++ +N FG E A + E+ ++A + N+
Sbjct: 101 REVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHS 160
Query: 485 LPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDK 544
P ++SGG +QR+ +ARA+ P ILL+DEA SALD +Q+ L K
Sbjct: 161 YPD-----------ELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVK 209
Query: 545 --AVVGRTTIIIAHRL-STIRNADVIAVVQDGQVMETGSHDELIQAESGLY 592
A RT + I+H L +R D IA++Q+G+V++ G+ DE++ + Y
Sbjct: 210 LQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDY 260
|
Length = 400 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 2e-25
Identities = 75/250 (30%), Positives = 128/250 (51%), Gaps = 27/250 (10%)
Query: 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI 420
+E + + F Y +++ K L+IP G AL+G +G+GKST++ L Y P G +
Sbjct: 5 IEVEDLHFRYKDGTKAL--KGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRV 62
Query: 421 ILDGVSIDKLQLKWLRSQMGLVSQEP--ALFATSIKENILFG------KEDASMEEVIEA 472
+ G ++ KW+RS++GLV Q+P +F++++ +++ FG +D V EA
Sbjct: 63 KVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEA 122
Query: 473 AKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDS 532
KA +F + P +S GQK+R+AIA + P +++LDE + LD
Sbjct: 123 LKAVRMWDFRDKPPY-----------HLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDP 171
Query: 533 ESERVVQEALDKAVVGRTTIIIA-HRLS-TIRNADVIAVVQDGQVMETGSH----DELIQ 586
+ + E LD+ T+I+A H + AD + V+++G+V+ G DE I
Sbjct: 172 RGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLTDEDIV 231
Query: 587 AESGLYTSLV 596
++GL LV
Sbjct: 232 EQAGLRLPLV 241
|
Length = 274 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 2e-25
Identities = 72/210 (34%), Positives = 113/210 (53%), Gaps = 13/210 (6%)
Query: 380 KDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439
D L +P G VAL+G SGSGKST++ ++ P G I L+G D ++ ++
Sbjct: 17 DDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQ--DATRVHARDRKI 74
Query: 440 GLVSQEPALFA-TSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGER-G 497
G V Q ALF ++++NI FG E + A+ + QL +G+R
Sbjct: 75 GFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELV-QL-----EGLGDRYP 128
Query: 498 VQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKA--VVGRTTIIIA 555
Q+SGGQ+QR+A+ARA+ P++LLLDE ALD++ + ++ L K V TT+ +
Sbjct: 129 NQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVT 188
Query: 556 HRLS-TIRNADVIAVVQDGQVMETGSHDEL 584
H + AD I V+ +G++ + GS DE+
Sbjct: 189 HDQEEAMEVADRIVVMSNGKIEQIGSPDEV 218
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 2e-25
Identities = 47/129 (36%), Positives = 73/129 (56%), Gaps = 13/129 (10%)
Query: 403 STVIALLQRFYAPLGGEIILDGVSIDKL-QLKWLRSQMGLVSQEPALFAT-SIKENILFG 460
ST++ L+ P G I+LDG L K LR ++G+V Q+P LF +++EN+ FG
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 461 -KEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPR 519
++ + EA + +F+ + E +SGGQKQR+AIARA++K P+
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDR----------EPVGTLSGGQKQRVAIARALLKKPK 110
Query: 520 ILLLDEATS 528
+LLLDE T+
Sbjct: 111 LLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 3e-25
Identities = 77/232 (33%), Positives = 115/232 (49%), Gaps = 30/232 (12%)
Query: 380 KDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKL---QLKWLR 436
LT+ G+T+ LVG SGSGKST+ L R GEI DG ID L +++ LR
Sbjct: 304 DGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS-QGEIRFDGQDIDGLSRKEMRPLR 362
Query: 437 SQMGLVSQEP--AL-----FATSIKENILFGKEDAS----MEEVIEAAKASNAHNFIR-Q 484
+M +V Q+P +L I+E + + S + VIEA + R +
Sbjct: 363 RRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNR 422
Query: 485 LPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDK 544
P ++ SGGQ+QRIAIARA+I P ++LLDE TSALD + V + L
Sbjct: 423 YPHEF-----------SGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRD 471
Query: 545 --AVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQAESGLYT 593
G + + I+H L+ +R + V++DG+++E G + + YT
Sbjct: 472 LQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFANPQHEYT 523
|
Length = 534 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 4e-25
Identities = 73/239 (30%), Positives = 119/239 (49%), Gaps = 31/239 (12%)
Query: 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI 420
+E K + F Y E D + G+ ++++G +GSGKST + L+ G+I
Sbjct: 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64
Query: 421 ILDGVSIDKLQLK--W-LRSQMGLVSQEP--ALFATSIKENILFGKEDASM------EEV 469
I+DG D L + W +R ++G+V Q P ++++++ FG E+ + E V
Sbjct: 65 IIDG---DLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERV 121
Query: 470 IEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSA 529
EA + +F + P ++SGGQKQR+AIA A+ P+I++LDEATS
Sbjct: 122 NEALELVGMQDFKEREP-----------ARLSGGQKQRVAIAGAVAMRPKIIILDEATSM 170
Query: 530 LDSESE----RVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDEL 584
LD E + ++ D T I I H L + +D + V+++GQV T + EL
Sbjct: 171 LDPEGRLELIKTIKGIRDD--YQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPREL 227
|
Length = 279 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 6e-25
Identities = 72/248 (29%), Positives = 126/248 (50%), Gaps = 40/248 (16%)
Query: 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI 420
+E + + YP+ +++ K+ L I G+ VA++G SG+GKST++ + R P G I
Sbjct: 2 LEVENLSKVYPNGKQAL--KNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSI 59
Query: 421 ILDGVSIDKLQ---LKWLRSQMGLVSQEPALFA-TSIKENILFGKEDASMEEVIEAAKAS 476
+L+G I KL+ L+ LR ++G++ Q L ++ EN+L G+
Sbjct: 60 LLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGR--------------L 105
Query: 477 NAHNFIRQLPQQYD-----------TQVG------ERGVQMSGGQKQRIAIARAIIKAPR 519
R L ++ +VG +R Q+SGGQ+QR+AIARA+ + P
Sbjct: 106 GYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPD 165
Query: 520 ILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVM 576
++L DE ++LD ++ + V + L + G T II H++ + AD I ++ G+++
Sbjct: 166 LILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIV 225
Query: 577 ETGSHDEL 584
G+ EL
Sbjct: 226 FDGAPSEL 233
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 7e-25
Identities = 74/243 (30%), Positives = 124/243 (51%), Gaps = 36/243 (14%)
Query: 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI 420
+EFK V + + + + L I G+ V ++G SGSGKST++ + + G++
Sbjct: 2 IEFKNVSKHFG---PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDL 58
Query: 421 ILDGVSI--DKLQLKWLRSQMGLVSQEPALFA--TSIKENILFG--------KEDA---S 465
I+DG+ + K+ + +R + G+V Q+ LF T++ EN++FG KE+A +
Sbjct: 59 IVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTAL-ENVMFGPLRVRGASKEEAEKQA 117
Query: 466 MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDE 525
E + + A AH++ +L SGGQ+QR+AIARA+ P+++L DE
Sbjct: 118 RELLAKVGLAERAHHYPSEL---------------SGGQQQRVAIARALAVKPKLMLFDE 162
Query: 526 ATSALDSE-SERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDE 583
TSALD E V++ D A G T +I+ H + A + + G++ E G
Sbjct: 163 PTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQV 222
Query: 584 LIQ 586
LI+
Sbjct: 223 LIK 225
|
Length = 240 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 7e-25
Identities = 64/225 (28%), Positives = 115/225 (51%), Gaps = 21/225 (9%)
Query: 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRF--YAP---LGGEIILDGVSI--DKL 430
I D L I + A +G SG GKST + R + P + GE+ +DG+ +
Sbjct: 20 ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDT 79
Query: 431 QLKWLRSQMGLVSQEPALFATSIKENILFG-------KEDASMEEVIEAAKASNAHNFIR 483
+ LR+++G+V Q+P F SI +N+ +G K ++E++E + S
Sbjct: 80 NVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVG----- 134
Query: 484 QLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALD 543
L ++ ++ + ++SGGQ+QR+ IARAI P +LL+DE SALD + V++ +
Sbjct: 135 -LWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQ 193
Query: 544 KAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQA 587
+ T I++ H + + +D +A Q G+++E + E+ +
Sbjct: 194 ELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFKN 238
|
Length = 251 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 8e-25
Identities = 68/224 (30%), Positives = 116/224 (51%), Gaps = 20/224 (8%)
Query: 375 ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLG-----GEIILDGVSI-- 427
++ I K+ L IP AL+G SG GKST I L R + G I LDGV I
Sbjct: 15 DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYD 74
Query: 428 DKLQLKWLRSQMGLVSQEPALFATSIKENILFG------KEDASMEEVIEAAKASNAHNF 481
+ + LR ++G+V Q+P F SI +N+ +G ++ +EE +E + + A
Sbjct: 75 PAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAA--- 131
Query: 482 IRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEA 541
L + ++ + + +SGGQ+QR+ IAR I +P ++L+DE SALD S +++
Sbjct: 132 ---LWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDL 188
Query: 542 LDKAVVGRTTIIIAHRL-STIRNADVIAVVQDGQVMETGSHDEL 584
+ K T +I+ H + R + + +G+++E+G D++
Sbjct: 189 IHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQI 232
|
Length = 250 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 103 bits (257), Expect = 9e-25
Identities = 70/205 (34%), Positives = 111/205 (54%), Gaps = 25/205 (12%)
Query: 382 FCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGL 441
F L + G+ VA++G SG+GKST++ L+ F P G I ++ S L + + +
Sbjct: 17 FDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSH--TGLAPYQRPVSM 74
Query: 442 VSQEPALFA-TSIKENILFG-----KEDA-SMEEVIEAAKASNAHNFIRQLPQQYDTQVG 494
+ QE LFA ++++NI G K +A E+V++AA+ +++ +LP+Q
Sbjct: 75 LFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQ------ 128
Query: 495 ERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVG---RTT 551
+SGGQ+QR+A+AR +++ ILLLDE SALD R AL K + RT
Sbjct: 129 -----LSGGQRQRVALARCLVRPNPILLLDEPFSALD-PLLREEMLALVKQLCSERQRTL 182
Query: 552 IIIAHRLS-TIRNADVIAVVQDGQV 575
+++ H LS A IAVV G++
Sbjct: 183 LMVTHHLSDARAIASQIAVVSQGKI 207
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 1e-24
Identities = 59/158 (37%), Positives = 88/158 (55%), Gaps = 3/158 (1%)
Query: 976 FAVMDRYTKIEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTAL 1035
F ++ E + + + G +E +++ F + + S + +AG++ A+
Sbjct: 309 FFDLEDSVFQREEPADAPELPNVKGAVEFRHITFEFANSSQGV--FDVSFEAKAGQTVAI 366
Query: 1036 VGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIR 1095
VG +G+GK+T+I L++R YDP G + ID DI + SLR+ IA V Q+ LF +IR
Sbjct: 367 VGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIR 426
Query: 1096 ENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133
ENI G DE E+ EAAKAA AHDFI + GYDT
Sbjct: 427 ENIRLGREGATDE-EVYEAAKAAAAHDFILKRSNGYDT 463
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 1e-24
Identities = 65/210 (30%), Positives = 107/210 (50%), Gaps = 23/210 (10%)
Query: 380 KDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439
D L I G+ V L+G SG GK+T + ++ P G I + G + L K +
Sbjct: 17 DDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDI 74
Query: 440 GLVSQEPALFA-TSIKENILFG------KEDASMEEVIEAAKASNAHNFIRQLPQQYDTQ 492
+V Q AL+ ++ +NI FG +D E V E A+ + + + P+Q
Sbjct: 75 AMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQ---- 130
Query: 493 VGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDK--AVVGRT 550
+SGGQ+QR+A+ RAI++ P++ L+DE S LD++ ++ L + +G T
Sbjct: 131 -------LSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTT 183
Query: 551 TIIIAH-RLSTIRNADVIAVVQDGQVMETG 579
TI + H ++ + AD IAV+ DGQ+ + G
Sbjct: 184 TIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (260), Expect = 1e-24
Identities = 71/219 (32%), Positives = 114/219 (52%), Gaps = 20/219 (9%)
Query: 380 KDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFY-----APLGGEIILDGVSI--DKLQL 432
D L + AL+G SG GKST + L R A + GEI+LDG +I + +
Sbjct: 23 HDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82
Query: 433 KWLRSQMGLVSQEPALFATSIKENILFG------KEDASMEEVIEAAKASNAHNFIRQLP 486
LR ++G+V Q+P F SI EN+ +G K+ A + E +E + A L
Sbjct: 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAA------LW 136
Query: 487 QQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV 546
+ ++ E + +SGGQ+QR+ IARA+ P +LL+DE SALD + + ++E + +
Sbjct: 137 DEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK 196
Query: 547 VGRTTIIIAHRL-STIRNADVIAVVQDGQVMETGSHDEL 584
T II+ H + R +DV A G+++E G +++
Sbjct: 197 ARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQI 235
|
Length = 253 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 1e-24
Identities = 72/227 (31%), Positives = 118/227 (51%), Gaps = 25/227 (11%)
Query: 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRS 437
+ + LTI G+ + L+G SG GK+TV+ L+ F P G I+LDG I + +
Sbjct: 29 VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NR 86
Query: 438 QMGLVSQEPALFA-TSIKENILFG------KEDASMEEVIEAAKASNAHNFIRQLPQQYD 490
+ V Q ALF ++ EN+ FG V+EA + F ++ P Q
Sbjct: 87 HVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQ-- 144
Query: 491 TQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV---V 547
+SGGQ+QR+AIARA++ P++LLLDE+ SALD + + +Q L KA+ +
Sbjct: 145 ---------LSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNEL-KALQRKL 194
Query: 548 GRTTIIIAH-RLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYT 593
G T + + H + + +D I V++DG++ + G+ E+ + L+
Sbjct: 195 GITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPKNLFV 241
|
Length = 375 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 1e-24
Identities = 72/217 (33%), Positives = 115/217 (52%), Gaps = 25/217 (11%)
Query: 381 DFCLTIPAGKTVALVGGSGSGKST---VIALLQRFYAPLGGEIILDGVSIDKLQLKWLRS 437
D L IP+G+ VAL+G SGSGK+T +IA L+R P G I+ G + ++
Sbjct: 20 DVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER---PDSGTILFGGEDATDVPVQ--ER 74
Query: 438 QMGLVSQEPALFA-TSIKENILFG-KEDASMEEVIEAAKASNAHNFIR--QLPQQYDTQV 493
+G V Q ALF ++ +N+ FG + E EA + H ++ QL +
Sbjct: 75 NVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQL-----DWL 129
Query: 494 GER-GVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDS----ESERVVQEALDKAVVG 548
+R Q+SGGQ+QR+A+ARA+ P++LLLDE ALD+ E R ++ D+ +
Sbjct: 130 ADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDE--LH 187
Query: 549 RTTIIIAHRLS-TIRNADVIAVVQDGQVMETGSHDEL 584
TT+ + H + AD + V+ G++ + G+ DE+
Sbjct: 188 VTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEV 224
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (278), Expect = 2e-24
Identities = 79/243 (32%), Positives = 123/243 (50%), Gaps = 11/243 (4%)
Query: 359 GEVEFKCVQFAY----PSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYA 414
G + F+ VQ Y P ++ + I + V +VG +GSGKST++ R
Sbjct: 1307 GSLVFEGVQMRYREGLP-----LVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE 1361
Query: 415 PLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAK 474
GGEI ++G I L+ LR Q ++ Q+P LF ++++N+ E AS EV A +
Sbjct: 1362 VCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLE-ASSAEVWAALE 1420
Query: 475 ASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIK-APRILLLDEATSALDSE 533
+ + D++V E G S GQ+Q + +ARA++K +L+DEAT+ +D
Sbjct: 1421 LVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPA 1480
Query: 534 SERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYT 593
+R +Q + A T I IAHRL T+ D I V+ G V E GS EL+ ++
Sbjct: 1481 LDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFH 1540
Query: 594 SLV 596
S+V
Sbjct: 1541 SMV 1543
|
Length = 1560 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 2e-24
Identities = 63/227 (27%), Positives = 109/227 (48%), Gaps = 34/227 (14%)
Query: 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI 420
+EF V YP + ++I AG+ V LVG SG+GKST++ L+ + P G I
Sbjct: 1 IEFINVTKTYP--NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTI 58
Query: 421 ILDGVSIDKL---QLKWLRSQMGLVSQEPALFAT-SIKENILFGKEDASMEEVIEAAKAS 476
++G + L + +LR ++G+V Q+ L ++ EN+ F ++E +
Sbjct: 59 RVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAF-----ALEVTGVPPREI 113
Query: 477 NAHNFIRQLPQQYDTQVGERG------VQMSGGQKQRIAIARAIIKAPRILLLDEATSAL 530
+++P + VG ++SGG++QR+AIARAI+ +P IL+ DE T L
Sbjct: 114 R-----KRVPAALE-LVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNL 167
Query: 531 DSESERVVQEALDKAVVGRTTIIIA-----------HRLSTIRNADV 566
D ++ + L K TT+++A HR+ + +
Sbjct: 168 DPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 2e-24
Identities = 72/219 (32%), Positives = 110/219 (50%), Gaps = 20/219 (9%)
Query: 380 KDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFY-----APLGGEIILDGVSI--DKLQL 432
D + IP + A +G SG GKST++ R + GEI LDG +I K+ +
Sbjct: 42 FDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDV 101
Query: 433 KWLRSQMGLVSQEPALFATSIKENILFG------KEDASMEEVIEAAKASNAHNFIRQLP 486
LR ++G+V Q P F SI EN+++G ++E +E + A L
Sbjct: 102 AELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAA------LW 155
Query: 487 QQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV 546
+ ++ E +SGGQ+QR+ IARAI P +LLLDE TSALD S ++E + +
Sbjct: 156 DEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELK 215
Query: 547 VGRTTIIIAHRL-STIRNADVIAVVQDGQVMETGSHDEL 584
T +I+ H + R +D A + G+++E G D L
Sbjct: 216 SKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTL 254
|
Length = 272 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 4e-24
Identities = 68/224 (30%), Positives = 114/224 (50%), Gaps = 20/224 (8%)
Query: 375 ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRF-----YAPLGGEIILDGVSI-D 428
E D L I K AL+G SG GKST + L R + GE++LDG +I D
Sbjct: 16 EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYD 75
Query: 429 K-LQLKWLRSQMGLVSQEPALFATSIKENILFG------KEDASMEEVIEAAKASNAHNF 481
K + + LR ++G+V Q+P F SI +N+ +G K+ +++++E A A
Sbjct: 76 KDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAA--- 132
Query: 482 IRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEA 541
L + + + +++SGGQ+QR+ IAR I P ++L+DE TSALD S +++
Sbjct: 133 ---LWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDL 189
Query: 542 LDKAVVGRTTIIIAHRLSTI-RNADVIAVVQDGQVMETGSHDEL 584
+ + T +I+ H + R +D A G ++E +++
Sbjct: 190 MVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKI 233
|
Length = 251 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 5e-24
Identities = 71/235 (30%), Positives = 113/235 (48%), Gaps = 38/235 (16%)
Query: 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDG------------- 424
+ K L AG ++++G SGSGKST + + P G I ++G
Sbjct: 21 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQL 80
Query: 425 VSIDKLQLKWLRSQMGLVSQEPALFA-TSIKENIL------FGKEDASMEEVIEAAKASN 477
DK QL+ LR+++G+V Q L++ ++ EN++ G S E IE A+
Sbjct: 81 KPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGV---SKAEAIERAEKYL 137
Query: 478 AHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERV 537
A I + Y +SGGQ+QR+AIARA+ P ++L DE TSALD E +
Sbjct: 138 AKVGIAEKADAYP-------AHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPE---L 187
Query: 538 VQEAL----DKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQA 587
V E L D A GRT +++ H + R+ + + + G++ E G +++
Sbjct: 188 VGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVFGN 242
|
Length = 256 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (254), Expect = 5e-24
Identities = 66/221 (29%), Positives = 109/221 (49%), Gaps = 25/221 (11%)
Query: 381 DFCLTIPAGKTVALVGGSGSGKSTVIALLQRF---YAPLGGEIILDGVSIDKLQLKWLRS 437
D + I K AL+G SG GKST + R A + G + ++G + + LR
Sbjct: 20 DINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK 79
Query: 438 QMGLVSQEPALFATSIKENILFG-----------KEDASMEEVIEAAKASNAHNFIRQLP 486
+G+V Q+P +F SI ENI + +E+A + + ++ L
Sbjct: 80 NVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVG----------LF 129
Query: 487 QQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV 546
++ ++ + + +SGGQ+QR+ IARA+ P++LLLDE TSALD S V++E L +
Sbjct: 130 EEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELS 189
Query: 547 VGRTTIIIAHRLST-IRNADVIAVVQDGQVMETGSHDELIQ 586
+ I++ H + R AD A G+++E G E +
Sbjct: 190 HNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFE 230
|
Length = 246 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 100 bits (253), Expect = 7e-24
Identities = 67/218 (30%), Positives = 110/218 (50%), Gaps = 36/218 (16%)
Query: 384 LTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGL-- 441
LT+P G+ VAL+G +G+GK+T++ + P G I DG I L R++ G+
Sbjct: 21 LTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPP-HERARAGIGY 79
Query: 442 VSQEPALFAT-SIKENILFG-------KEDASMEEVIEAAKASNAHNFIRQLPQQYDTQV 493
V + +F +++EN+L G K A +E V E F R L ++
Sbjct: 80 VPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYEL--------FPR-LKERRKQLA 130
Query: 494 GERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQE---ALDKAVVGRT 550
G +SGG++Q +AIARA++ P++LLLDE + L + ++V+E A+ +
Sbjct: 131 G----TLSGGEQQMLAIARALMSRPKLLLLDEPSEGL---APKIVEEIFEAIRELRDEGV 183
Query: 551 TIII----AHRLSTIRNADVIAVVQDGQVMETGSHDEL 584
TI++ A I AD V++ G+V+ G+ EL
Sbjct: 184 TILLVEQNARFALEI--ADRAYVLERGRVVLEGTAAEL 219
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 7e-24
Identities = 56/219 (25%), Positives = 104/219 (47%), Gaps = 37/219 (16%)
Query: 362 EFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEII 421
E + + +Y P + +D + G+ +A+VG +G+GKST++ + P G I
Sbjct: 1 EVEDLTVSYGGHP---VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIR 57
Query: 422 LDGVSIDKLQLKWLRSQMGLVSQEPAL---FATSIKENILFG------------KEDASM 466
+ G ++K R ++G V Q ++ F S+++ +L G K D
Sbjct: 58 VFGKPLEKE-----RKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKAD--K 110
Query: 467 EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEA 526
+V EA + + Q+GE +SGGQ+QR+ +ARA+++ P +LLLDE
Sbjct: 111 AKVDEALERVGLSELADR-------QIGE----LSGGQQQRVLLARALVQDPDLLLLDEP 159
Query: 527 TSALDSESERVVQEALDK-AVVGRTTIIIAHRLSTIRNA 564
+ +D +++ + E L + G T +++ H L +
Sbjct: 160 FAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEY 198
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 7e-24
Identities = 61/205 (29%), Positives = 103/205 (50%), Gaps = 18/205 (8%)
Query: 381 DFCLTIPAGKTVALVGGSGSGKSTVIALLQRF-----YAPLGGEIILDGVSI--DKLQLK 433
D + IP + A++G SG GKST + + R A + GE+ G ++ +
Sbjct: 57 DVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPV 116
Query: 434 WLRSQMGLVSQEPALFATSIKENILFG----KEDASMEEVIEAAKASNAHNFIRQLPQQY 489
LR ++G+V Q+P F SI +N+ +G D ++E +E + A L +
Sbjct: 117 ALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAA------LWDEV 170
Query: 490 DTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGR 549
Q+ G+ +SGGQ+QR+ IARAI P ++L+DE SALD + +++ +++
Sbjct: 171 KDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEY 230
Query: 550 TTIIIAHRL-STIRNADVIAVVQDG 573
T +I+ H + R +D AV G
Sbjct: 231 TVVIVTHNMQQAARISDKTAVFLTG 255
|
Length = 285 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 104 bits (260), Expect = 8e-24
Identities = 73/223 (32%), Positives = 115/223 (51%), Gaps = 33/223 (14%)
Query: 381 DFCL----TIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGV----SIDKLQL 432
DF L T+P A+ G SGSGK+T+I L+ P GEI+L+G S + L
Sbjct: 11 DFSLDADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFL 70
Query: 433 KWLRSQMGLVSQEPALFA-TSIKENILFGKEDA-------SMEEVIEAAKASNAHNFIRQ 484
+ ++G V QE LF S++ N+ +G + A S E VIE + + +
Sbjct: 71 PPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELL---GIGHLLGR 127
Query: 485 LPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDK 544
LP + +SGG+KQR+AI RA++ +PR+LL+DE +ALD + + L++
Sbjct: 128 LPGR-----------LSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLER 176
Query: 545 --AVVGRTTIIIAHRLSTI-RNADVIAVVQDGQVMETGSHDEL 584
A G + ++H L + R AD + V++DG+V G E+
Sbjct: 177 LHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEV 219
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 9e-24
Identities = 70/225 (31%), Positives = 114/225 (50%), Gaps = 31/225 (13%)
Query: 380 KDFCLTIPAGKTVALVGGSGSGKSTVIALLQRF-----YAPLGGEIILDGV-----SIDK 429
D L IP A +G SG GKST + L R + G+I LDG +D
Sbjct: 36 FDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDV 95
Query: 430 LQLKWLRSQMGLVSQEPALFATSIKENILFG-------KEDASMEEVIEAA--KASNAHN 480
++L R+++G+V Q+P F SI EN+ +G + A ++E++E + KA
Sbjct: 96 VEL---RARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAG---- 148
Query: 481 FIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQE 540
L ++ ++ E G +SGGQ+QR+ IARAI +P ++L+DE SALD + V+E
Sbjct: 149 ----LWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEE 204
Query: 541 ALDKAVVGRTTIIIAHRLS-TIRNADVIAVVQDGQVMETGSHDEL 584
+D+ T +I+ H + R + A G ++E G +++
Sbjct: 205 LIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKM 249
|
Length = 267 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 1e-23
Identities = 68/204 (33%), Positives = 106/204 (51%), Gaps = 29/204 (14%)
Query: 382 FCLTIPAGKTVALVGGSGSGKSTVIALLQRFY-----APLGGEIILDGV-----SIDKLQ 431
FC IP GK AL+G SG GKSTV+ L R L G ++ DG +D ++
Sbjct: 33 FC-DIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVE 91
Query: 432 LKWLRSQMGLVSQEPALFATSIKENILFGKE----DASMEEVIEAAKASNAHNFIRQ--L 485
+ R ++G+V Q+P F SI ENI FG M+E++E + +R+ +
Sbjct: 92 V---RRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERS--------LRKAAV 140
Query: 486 PQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKA 545
+ ++ E G +SGGQ+QR+ IAR I P ++L+DE SALD S ++E + +
Sbjct: 141 WDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHEL 200
Query: 546 VVGRTTIIIAHRL-STIRNADVIA 568
T +I+ H + +R +D+ A
Sbjct: 201 KKNFTIVIVTHNMQQAVRVSDMTA 224
|
Length = 269 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 98.9 bits (247), Expect = 2e-23
Identities = 59/194 (30%), Positives = 95/194 (48%), Gaps = 21/194 (10%)
Query: 368 FAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSI 427
F+Y E I D L + AG+ +AL G +G+GK+T+ +L G I+L+G
Sbjct: 7 FSYKKGTE--ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNG--- 61
Query: 428 DKLQLKWLRSQMGLVSQEP--ALFATSIKENILFGKEDAS--MEEVIEAAKASNAHNFIR 483
++ K R +G V Q+ LF S++E +L G ++ E+ K + +
Sbjct: 62 KPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKE 121
Query: 484 QLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALD 543
+ P +SGGQKQR+AIA A++ +L+ DE TS LD ++ V E +
Sbjct: 122 RHPLS-----------LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIR 170
Query: 544 K-AVVGRTTIIIAH 556
+ A G+ I+I H
Sbjct: 171 ELAAQGKAVIVITH 184
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 2e-23
Identities = 71/242 (29%), Positives = 110/242 (45%), Gaps = 29/242 (11%)
Query: 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLG- 417
G + ++ AY + + D L I AG+ +AL+G SG GK+T++ + F G
Sbjct: 4 GGIRIDHLRVAYGAN---TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGL 60
Query: 418 -GEIILDGVSIDKLQLKWLRSQMGLVSQEPALFA-TSIKENILFGKEDASM------EEV 469
G I + D + + L+ Q ALF +++N+ FG M E V
Sbjct: 61 TGRIAIADR--DLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERV 118
Query: 470 IEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSA 529
+A K + LP Q +SGG +QRIAIARAI P +LLLDE SA
Sbjct: 119 ADALKLVGLGDAAAHLPAQ-----------LSGGMQQRIAIARAIAIEPDVLLLDEPLSA 167
Query: 530 LDSESERVVQE---ALDKAVVGRTTIIIAH-RLSTIRNADVIAVVQDGQVMETGSHDELI 585
LD+ ++E AL + + T + + H + + AD +++DG++ G L
Sbjct: 168 LDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALY 227
Query: 586 QA 587
A
Sbjct: 228 DA 229
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 3e-23
Identities = 52/149 (34%), Positives = 82/149 (55%), Gaps = 5/149 (3%)
Query: 988 EDPEGHQPERI---TGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKS 1044
E P + + G + ++ + A P + I +G S ++AG++ ++G SGSGKS
Sbjct: 318 ELPAAAERMPLPAPQGALSVERLTAAPPGQKKP-ILKGISFALQAGEALGIIGPSGSGKS 376
Query: 1045 TIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASD 1104
T+ L+ + P G V++D D+R + L RHI + Q+ LF GTI ENIA +
Sbjct: 377 TLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFG-E 435
Query: 1105 EIDESEIVEAAKAANAHDFIAGLNEGYDT 1133
E D +++EAA+ A H+ I L +GYDT
Sbjct: 436 EADPEKVIEAARLAGVHELILRLPQGYDT 464
|
Length = 580 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 99.4 bits (248), Expect = 3e-23
Identities = 59/221 (26%), Positives = 107/221 (48%), Gaps = 27/221 (12%)
Query: 380 KDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439
+D G+ L+G +G+GK+T++ ++ P G++ +DGV + ++R ++
Sbjct: 19 RDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR-DPSFVRRKI 77
Query: 440 GLVSQEPALFA-TSIKENILF---------GKEDASMEEVIEAAKASNAHNFIRQLPQQY 489
G++ E L+A + +EN+ + + A + E+ + QL +
Sbjct: 78 GVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRL----------QLLEYL 127
Query: 490 DTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKA-VVG 548
D +VGE S G KQ++AIARA++ P IL+LDE TS LD + R + + + G
Sbjct: 128 DRRVGE----FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEG 183
Query: 549 RTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQAE 588
R I +H + + D + V+ G+V+ GS + L
Sbjct: 184 RAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDART 224
|
Length = 245 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 99.6 bits (249), Expect = 4e-23
Identities = 63/222 (28%), Positives = 105/222 (47%), Gaps = 24/222 (10%)
Query: 380 KDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439
D L + G+ V L+G +G+GK+T+ L+ FY P G +I G I L +++
Sbjct: 21 NDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPH-RIARL 79
Query: 440 GLVS--QEPALFAT-SIKENIL------------FGKEDASMEEVIEAAKASNAHNFIRQ 484
G+ Q LF ++ EN+ G+ A EE +A F+
Sbjct: 80 GIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVG- 138
Query: 485 LPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSAL-DSESERVVQEALD 543
L + D G +S GQ++R+ IARA+ P++LLLDE + L E+E + + +
Sbjct: 139 LGELADRPAGN----LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRE 194
Query: 544 -KAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDE 583
+ G T ++I H + + AD I V+ G+V+ G+ +E
Sbjct: 195 LRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEE 236
|
Length = 250 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 4e-23
Identities = 71/244 (29%), Positives = 117/244 (47%), Gaps = 25/244 (10%)
Query: 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP---LG 417
VEFK V F YP + + D +IP G AL+G +GSGKST+ L+ P
Sbjct: 6 VEFKHVSFTYPDSKKPAL-NDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPN 64
Query: 418 GEIILDGVSIDKLQLKWLRSQMGLVSQEP--ALFATSIKENILFGKED-----ASMEEVI 470
+I +DG+++ + +R ++G+V Q P ++ +++ FG E+ M +++
Sbjct: 65 SKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIV 124
Query: 471 EAAKAS-NAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSA 529
A ++I P +SGGQKQR+AIA + P+I++LDE+TS
Sbjct: 125 RDVLADVGMLDYIDSEPAN-----------LSGGQKQRVAIAGILAVEPKIIILDESTSM 173
Query: 530 LDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQA 587
LD + + + + K T I I H + AD + V+ DG+++ GS E+
Sbjct: 174 LDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSK 233
Query: 588 ESGL 591
L
Sbjct: 234 VEML 237
|
Length = 282 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 4e-23
Identities = 71/220 (32%), Positives = 115/220 (52%), Gaps = 18/220 (8%)
Query: 375 ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSI--DKLQL 432
E + + I G+ V L+G +GSGKST+I L P G+II+DGV I K++L
Sbjct: 19 EKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKL 78
Query: 433 KWLRSQMGLVSQEP--ALFATSIKENILFGKED--ASMEEVIEAAKASNAHNFIRQLPQQ 488
+R ++GLV Q P LF +I+++I FG + S EE+ K + + +
Sbjct: 79 SDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRA-----MNIVGLD 133
Query: 489 YDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALD----SESERVVQEALDK 544
Y+ + ++SGGQK+R+AIA + P+IL+LDE T+ LD E ++E +
Sbjct: 134 YEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKE 193
Query: 545 AVVGRTTIIIAHRLSTI-RNADVIAVVQDGQVMETGSHDE 583
T I+++H + + + AD I V+ G+ G+ E
Sbjct: 194 --YNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPRE 231
|
Length = 287 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 98.4 bits (245), Expect = 5e-23
Identities = 64/205 (31%), Positives = 112/205 (54%), Gaps = 9/205 (4%)
Query: 376 SIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWL 435
+ I + L++ AG+ +A+ G SG GKST++ ++ +P G ++ +G + L+ +
Sbjct: 16 AKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAY 75
Query: 436 RSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGE 495
R Q+ +Q PALF ++++N++F + + AA A LP D+ + +
Sbjct: 76 RQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLAR---FALP---DSILTK 129
Query: 496 RGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTII 553
++SGG+KQRIA+ R + P+ILLLDE TSALD ++R ++E + + V +
Sbjct: 130 NITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLW 189
Query: 554 IAH-RLSTIRNADVIAVVQDGQVME 577
I H + IR+AD + +Q G E
Sbjct: 190 ITHDKDQAIRHADKVITLQPGHAGE 214
|
Length = 223 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 99.2 bits (247), Expect = 6e-23
Identities = 69/215 (32%), Positives = 110/215 (51%), Gaps = 20/215 (9%)
Query: 379 FKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRF--YAP---LGGEIILDGVSI--DKLQ 431
K+ L+IP + A++G SG GKST I L P L GE+ +G +I K+
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 432 LKWLRSQMGLVSQEPALFATSIKENILFG------KEDASMEEVIEAAKASNAHNFIRQL 485
L LR +G+V Q+ F SI +N+ +G K ++E++E + A L
Sbjct: 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVA------L 141
Query: 486 PQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKA 545
+ ++ + + +SGGQ+QR+ IARA+ P +LL+DE TSALD S R ++E + K
Sbjct: 142 WDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKL 201
Query: 546 VVGRTTIIIAHRL-STIRNADVIAVVQDGQVMETG 579
T +I+ H + R +D A G+++E
Sbjct: 202 KEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECN 236
|
Length = 259 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 97.7 bits (244), Expect = 7e-23
Identities = 69/216 (31%), Positives = 106/216 (49%), Gaps = 28/216 (12%)
Query: 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI 420
+EF V AYP D L I G+ + L G SG+GK+T++ LL P G++
Sbjct: 2 IEFHNVSKAYPGGVA--ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQV 59
Query: 421 ILDGVSIDKL---QLKWLRSQMGLVSQEPALFAT-SIKENILFG------KEDASMEEVI 470
+ G +++L QL LR ++G+V Q+ L ++ EN+ KE V
Sbjct: 60 RIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVG 119
Query: 471 EAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSAL 530
A + + P+Q +SGG++QR+AIARAI+ +P +LL DE T L
Sbjct: 120 AALRQVGLEHKADAFPEQ-----------LSGGEQQRVAIARAIVNSPPLLLADEPTGNL 168
Query: 531 DSE-SERVVQ--EALDKAVVGRTTIIIAHRLSTIRN 563
D + SER++ + L+K G T I+ H LS +
Sbjct: 169 DPDLSERILDLLKRLNKR--GTTVIVATHDLSLVDR 202
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 99.1 bits (247), Expect = 7e-23
Identities = 60/191 (31%), Positives = 100/191 (52%), Gaps = 16/191 (8%)
Query: 370 YPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDK 429
Y +P S +D LTI +G+ V ++G SG GK+T++ L+ F P G I L+G I+
Sbjct: 13 YEGKPRSA-LEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEG 71
Query: 430 LQLKWLRSQMGLVSQEPALFA-TSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLP-Q 487
++ G+V Q AL ++ +N+ FG + +E+ A + AH + + +
Sbjct: 72 PG-----AERGVVFQNEALLPWLNVIDNVAFGLQLRGIEK---AQRREIAHQMLALVGLE 123
Query: 488 QYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKA-- 545
+ + Q+SGG +QR+ IARA+ P++LLLDE ALD+ + +QE L
Sbjct: 124 GAEHK---YIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQ 180
Query: 546 VVGRTTIIIAH 556
G+ ++I H
Sbjct: 181 ETGKQVLLITH 191
|
Length = 259 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 9e-23
Identities = 123/487 (25%), Positives = 196/487 (40%), Gaps = 71/487 (14%)
Query: 662 VPSFRRLV--ALNAPEWKQATLGCVG--ATLFGAVQPIYAFAMGSMISVYFLT-DHDEIK 716
R L+ AL + +G TL G + PI A G +I D +
Sbjct: 120 ALGLRDLLRFALRGARRDLLAILAMGLLGTLLGMLVPI---ATGILIGTAIPDADRSLLV 176
Query: 717 KKTSIYAFCFLGLAVFTLVINIIQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDEN 776
+ +G A F L ++ M L + +R+L V +F Q
Sbjct: 177 QIALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVWDRLLR----LPVSFFRQ--Y 230
Query: 777 SSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIA--WRLALVMIAVQPL 834
S+G + SR A + +R ++ T L +S + +GL W+LALV +A+ +
Sbjct: 231 STGDLASR-AMGISQIRRILSGST--LTTLLSGIFALLNLGLMFYYSWKLALVAVALALV 287
Query: 835 VIICFYARRVLLKSMSNKAIKAQAESSKLAAE---AVSNLRTITA-----------FSSQ 880
I +L + ++ + S L + +S LR A FS Q
Sbjct: 288 AIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQ 347
Query: 881 HRILKMLEKAQQGPRRESIRQSWYAGIGLA-FSQSLASCTWALDFWYGGRLIADGYISSK 939
++ L + L F+ L T A F L+ +S
Sbjct: 348 RKL--ELSAQR-------------IENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSL- 391
Query: 940 ALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRYTKI------EPE-DPEG 992
F F + G + S+ + S+ AV+ + + PE D
Sbjct: 392 GSFLAFNT--AFGSFSGAVTQL-------SNTLISILAVIPLWERAKPILEALPEVDEAK 442
Query: 993 HQPERITGNIELQNVHFAYPARPDVM-IFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIE 1051
P +++G IE+ V F Y RPD I + S++IE G+ A+VG SGSGKST++ L+
Sbjct: 443 TDPGKLSGAIEVDRVTFRY--RPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLL 500
Query: 1052 RFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEI 1111
F P G V D +D+ ++++RR + +V Q L +G+I ENIA GA +DE+
Sbjct: 501 GFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAW- 559
Query: 1112 VEAAKAA 1118
EAA+ A
Sbjct: 560 -EAARMA 565
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 98.6 bits (245), Expect = 9e-23
Identities = 69/213 (32%), Positives = 105/213 (49%), Gaps = 20/213 (9%)
Query: 379 FKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFY-----APLGGEIILDGVSI--DKLQ 431
K + I VA +G SG GKST + L R L GEI +DG +I +Q
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78
Query: 432 LKWLRSQMGLVSQEPALFATSIKENILFG------KEDASMEEVIEAAKASNAHNFIRQL 485
+ LR +G+V Q P F SI EN+ +G K++A + + +E A L
Sbjct: 79 VDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAA------L 132
Query: 486 PQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKA 545
+ ++ E +SGGQ+QR+ IARA+ +P +LL+DE SALD S V+E + +
Sbjct: 133 WDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHEL 192
Query: 546 VVGRTTIIIAHRL-STIRNADVIAVVQDGQVME 577
T +I+ H + R +D A G+++E
Sbjct: 193 KKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVE 225
|
Length = 250 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 1e-22
Identities = 36/110 (32%), Positives = 64/110 (58%), Gaps = 2/110 (1%)
Query: 1024 SIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALV 1083
+ + AG+ ALVG SG+GK++++ + F P +G +KI+ ++R S R+H++ V
Sbjct: 370 NFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWV 428
Query: 1084 SQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133
Q P L GT+R+N+ G D + ++ +A + A +F+ L +G DT
Sbjct: 429 GQNPQLPHGTLRDNVLLGNPD-ASDEQLQQALENAWVSEFLPLLPQGLDT 477
|
Length = 588 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 99.0 bits (247), Expect = 1e-22
Identities = 69/238 (28%), Positives = 115/238 (48%), Gaps = 25/238 (10%)
Query: 361 VEFKCVQFAYPSRPES---IIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLG 417
++ K V + Y S ES + D L + G+ + ++G +GSGKST+ + P
Sbjct: 5 IKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSE 64
Query: 418 GEIILDGVSIDKLQLKW-LRSQMGLVSQEP--ALFATSIKENILFGKEDASM------EE 468
G++ +DG+ + W +R++ G+V Q P + AT ++E++ FG E+ + E
Sbjct: 65 GKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRER 124
Query: 469 VIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATS 528
V E+ K + + R P +SGGQKQR+AIA + P ++ DE T+
Sbjct: 125 VDESLKKVGMYEYRRHAPHL-----------LSGGQKQRVAIAGILAMRPECIIFDEPTA 173
Query: 529 ALDSESERVVQEALDK--AVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDEL 584
LD R V + + G T I+I H + AD I V+ G+V+ G+ E+
Sbjct: 174 MLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEI 231
|
Length = 280 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 97.5 bits (244), Expect = 1e-22
Identities = 56/218 (25%), Positives = 103/218 (47%), Gaps = 19/218 (8%)
Query: 380 KDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439
D ++ G+ L+G +G+GK+T+ L+ F P G ++ DG I L +++
Sbjct: 17 DDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPH-EIARL 75
Query: 440 GLVS--QEPALFAT-SIKENILFG-----KEDASMEEVIEAAKASN--AHNFIRQ--LPQ 487
G+ Q P LF ++ EN++ + + + A + + L
Sbjct: 76 GIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLAD 135
Query: 488 QYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSAL-DSESERVVQEALDKAV 546
D GE +S GQ++R+ IARA+ P++LLLDE + L E+E + + +
Sbjct: 136 LADRPAGE----LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE 191
Query: 547 VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDE 583
G T +++ H + + + AD + V+ G+V+ G+ DE
Sbjct: 192 RGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDE 229
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 97.7 bits (244), Expect = 2e-22
Identities = 64/251 (25%), Positives = 123/251 (49%), Gaps = 37/251 (14%)
Query: 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGE 419
+E + + +Y +RP + +D L++ G+ AL+G +G+GKST++ + P GE
Sbjct: 4 MIEVENLTVSYGNRP---VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGE 60
Query: 420 IILDGVSIDKLQLKWLRSQMGLVSQEPAL---FATSIKENI---------LFGKEDASME 467
I + G + K + K LR +G V Q+ ++ F ++K+ + F + + +
Sbjct: 61 IKIFGKPVRK-RRKRLR--IGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDK 117
Query: 468 EVIEAA-KASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEA 526
E ++ A + + D Q+GE +SGGQKQR+ +ARA+ + P +LLLDE
Sbjct: 118 EKVDEALERVGMEDLR-------DRQIGE----LSGGQKQRVLLARALAQNPDLLLLDEP 166
Query: 527 TSALDSESERVVQEALDKAV-VGRTTIIIAHRLST-IRNADVIA-----VVQDGQVMETG 579
+ +D ++ + + L + G+T +++ H L + D + ++ G E
Sbjct: 167 FTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLIASGPPEEVL 226
Query: 580 SHDELIQAESG 590
+ + L +A G
Sbjct: 227 TEENLEKAFGG 237
|
Length = 254 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 99.6 bits (248), Expect = 2e-22
Identities = 68/214 (31%), Positives = 119/214 (55%), Gaps = 14/214 (6%)
Query: 379 FKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKL---QLKWL 435
+ L +PAG+ ++G SG+GKST+I + P G +I+DG + L +L
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80
Query: 436 RSQMGLVSQEPALFAT-SIKENILFGKE-DASMEEVIEAAKASNAHNFIRQLPQQYDTQV 493
R Q+G++ Q L ++ ++ N+ E D + ++ I+ K + + L ++D+
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKR-KVTELLALV-GLGDKHDSYP 138
Query: 494 GERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKA--VVGRTT 551
+SGGQKQR+AIARA+ P++LL DEATSALD + + + E L + +G T
Sbjct: 139 S----NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTI 194
Query: 552 IIIAHRLSTI-RNADVIAVVQDGQVMETGSHDEL 584
++I H + + R D +AV+ +G+++E G+ E+
Sbjct: 195 LLITHEMDVVKRICDCVAVISNGELIEQGTVSEI 228
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 97.0 bits (242), Expect = 2e-22
Identities = 70/243 (28%), Positives = 115/243 (47%), Gaps = 24/243 (9%)
Query: 366 VQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGV 425
+ F Y +R D T+ G+ VAL+G +G+GKST+ +LL R Y G+I + G
Sbjct: 7 LSFRYGARR---ALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGH 63
Query: 426 SIDKLQLKWLRSQMGLVSQEPAL-FATSIKENILF-----GKEDASMEEVIEAAKASNAH 479
+ + L ++G+V Q+P L S+++N+ + G A I A
Sbjct: 64 DLRRAPRAALA-RLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARARIAELLAR--- 119
Query: 480 NFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESER-VV 538
L ++ D +V E ++GG ++R+ IARA++ P +LLLDE T LD S +
Sbjct: 120 ---LGLAERADDKVRE----LNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIT 172
Query: 539 QEALDKAVVGRTTIIIA-HRLSTIRNADVIAVVQDGQVMETGSHDELIQAESG--LYTSL 595
A +++ A H + I D + V+ G+V+ G+ EL A G L +
Sbjct: 173 AHVRALARDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGATGGADLEAAF 232
Query: 596 VRL 598
+ L
Sbjct: 233 LAL 235
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 95.7 bits (239), Expect = 4e-22
Identities = 44/126 (34%), Positives = 68/126 (53%), Gaps = 15/126 (11%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYD-----P 1056
IEL++++ Y D + S+ I G+ TAL+G SG GKST++ L+ R D P
Sbjct: 1 IELRDLNVYYG---DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP 57
Query: 1057 LKGDVKIDDRDIRS--YHLRSLRRHIALVSQEPTLFAGTIRENIAYGA-----SDEIDES 1109
+G+V +D +DI + LRR + +V Q+P F G+I +N+AYG + +
Sbjct: 58 DEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELD 117
Query: 1110 EIVEAA 1115
E VE A
Sbjct: 118 ERVEEA 123
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 94.9 bits (237), Expect = 4e-22
Identities = 59/208 (28%), Positives = 97/208 (46%), Gaps = 44/208 (21%)
Query: 360 EVEFKCVQFAYPSRPES---IIFKDFCLTIPAGKTVALVGGSGSGKSTVIALL--QRFYA 414
+ F+ + S P + K+ G+ A++G SG+GKST++ L +R
Sbjct: 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL 62
Query: 415 PLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFAT-SIKENILFGKEDASMEEVIEAA 473
+ GE++++G +DK + R +G V Q+ L T +++E ++F AA
Sbjct: 63 GVSGEVLINGRPLDK---RSFRKIIGYVPQDDILHPTLTVRETLMF------------AA 107
Query: 474 KASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSE 533
K +R L SGG+++R++IA ++ P +L LDE TS LDS
Sbjct: 108 K-------LRGL---------------SGGERKRVSIALELVSNPSLLFLDEPTSGLDSS 145
Query: 534 SERVVQEALDK-AVVGRTTIIIAHRLST 560
S V L + A GRT I H+ S+
Sbjct: 146 SALQVMSLLRRLADTGRTIICSIHQPSS 173
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 103 bits (257), Expect = 5e-22
Identities = 62/212 (29%), Positives = 115/212 (54%), Gaps = 2/212 (0%)
Query: 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRS 437
+ +D ++ G+ V L+G +GSGKST+++ L R GEI +DGVS + + L+ R
Sbjct: 1234 VLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRL-LSTEGEIQIDGVSWNSVTLQTWRK 1292
Query: 438 QMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERG 497
G++ Q+ +F+ + ++N L E S EE+ + A+ + I Q P + D + + G
Sbjct: 1293 AFGVIPQKVFIFSGTFRKN-LDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGG 1351
Query: 498 VQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHR 557
+S G KQ + +AR+I+ +ILLLDE ++ LD + +++++ L ++ T I+ HR
Sbjct: 1352 YVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHR 1411
Query: 558 LSTIRNADVIAVVQDGQVMETGSHDELIQAES 589
+ + V++ V + S +L+ S
Sbjct: 1412 VEALLECQQFLVIEGSSVKQYDSIQKLLNETS 1443
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 96.4 bits (240), Expect = 6e-22
Identities = 62/206 (30%), Positives = 105/206 (50%), Gaps = 28/206 (13%)
Query: 380 KDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFY-----APLGGEIILDGVS-----IDK 429
K+ L IP + A +G SG GKST++ R + G++ G + +D
Sbjct: 27 KNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86
Query: 430 LQLKWLRSQMGLVSQEPALFATSIKENILFGKE----DASMEEVIEAAKASNAHNFIRQ- 484
+++ R ++G+V Q+P F SI +NI +G M+E++E + +RQ
Sbjct: 87 VEV---RRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERS--------LRQA 135
Query: 485 -LPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALD 543
L + ++ + G+ +SGGQ+QR+ IARAI P ++L+DE SALD S ++E +
Sbjct: 136 ALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMH 195
Query: 544 KAVVGRTTIIIAHRL-STIRNADVIA 568
+ T II+ H + R +D+ A
Sbjct: 196 ELKEQYTIIIVTHNMQQAARVSDMTA 221
|
Length = 264 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 99.1 bits (247), Expect = 6e-22
Identities = 72/214 (33%), Positives = 116/214 (54%), Gaps = 23/214 (10%)
Query: 381 DFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440
D LTI G+ AL+G SG GKST++ +L F P G+I+LDGV D + + +
Sbjct: 37 DVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGV--DLSHVPPYQRPIN 94
Query: 441 LVSQEPALFA-TSIKENILFG-KED--ASME---EVIEAAKASNAHNFIRQLPQQYDTQV 493
++ Q ALF ++++NI FG K+D E V E + F ++ P Q
Sbjct: 95 MMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQ----- 149
Query: 494 GERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSE-SERVVQEALD-KAVVGRTT 551
+SGGQ+QR+A+AR++ K P++LLLDE ALD + +R+ E +D VG T
Sbjct: 150 ------LSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTC 203
Query: 552 IIIAH-RLSTIRNADVIAVVQDGQVMETGSHDEL 584
+++ H + + A IA++ G+ ++ G +E+
Sbjct: 204 VMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEI 237
|
Length = 377 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 96.0 bits (239), Expect = 6e-22
Identities = 63/210 (30%), Positives = 111/210 (52%), Gaps = 28/210 (13%)
Query: 393 ALVGGSGSGKSTVIALLQRF-----YAPLGGEIILDGVSI-----DKLQLKWLRSQMGLV 442
AL+G SGSGKST++ + R + G I+ +G +I D + L R ++G+V
Sbjct: 35 ALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDL---RKEIGMV 91
Query: 443 SQEPALFATSIKENILFG------KEDASMEEVIEAA-KASNAHNFIRQLPQQYDTQVGE 495
Q+P F SI EN+++G K+ ++E +E + K ++ + ++ + +D+ +G
Sbjct: 92 FQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKD--RLHDSALG- 148
Query: 496 RGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIA 555
+SGGQ+QR+ IAR + +P+I+LLDE TSALD S ++E L T +++
Sbjct: 149 ----LSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVT 204
Query: 556 HRLSTI-RNADVIAVVQDGQVMETGSHDEL 584
+ R +D DG ++E ++
Sbjct: 205 RSMQQASRISDRTGFFLDGDLIEYNDTKQM 234
|
Length = 252 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 96.3 bits (239), Expect = 6e-22
Identities = 65/221 (29%), Positives = 116/221 (52%), Gaps = 14/221 (6%)
Query: 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDG---------VSID 428
I KD + IP ++G SGSGKST++ +L R +I +DG ID
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84
Query: 429 KLQLKWLRSQMGLVSQEPALFA-TSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQ 487
++L R ++G+V Q+P F SI +NI + + ++E E K L +
Sbjct: 85 AIKL---RKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWK 141
Query: 488 QYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVV 547
+ ++ Q+SGGQ+QR+ IARA+ P++LL+DE TS +D + + +++ + +
Sbjct: 142 EVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN 201
Query: 548 GRTTIIIAHRLSTI-RNADVIAVVQDGQVMETGSHDELIQA 587
+I++H + R AD +A + +G+++E GS +E+ +
Sbjct: 202 EIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTS 242
|
Length = 257 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 95.7 bits (238), Expect = 7e-22
Identities = 60/218 (27%), Positives = 109/218 (50%), Gaps = 27/218 (12%)
Query: 381 DFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSID------KLQLKW 434
D L P G+T+ L+G SG+GKS+++ +L P G + + G D ++
Sbjct: 20 DITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRD 79
Query: 435 LRSQMGLVSQEPALFA-TSIKENILFG-------KEDASMEEVIEAAKASNAHNFIRQLP 486
LR +G+V Q+ L+ +++EN++ +D ++ + K + + P
Sbjct: 80 LRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYP 139
Query: 487 QQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSE-SERVVQEALDKA 545
+ +SGGQ+QR+AIARA++ P++LL DE T+ALD E + ++V + A
Sbjct: 140 -----------LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELA 188
Query: 546 VVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHD 582
G T +I+ H + R A + +++G ++E G
Sbjct: 189 ETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDAS 226
|
Length = 242 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 9e-22
Identities = 52/144 (36%), Positives = 78/144 (54%), Gaps = 10/144 (6%)
Query: 990 PEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGL 1049
PEGH + ++NV P G S ++AG++ A++G SGSGKST+ L
Sbjct: 313 PEGH--------LSVENVTIV-PPGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARL 363
Query: 1050 IERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDES 1109
I + P G V++D D++ + + +HI + Q+ LF GT+ ENIA + D
Sbjct: 364 IVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIAR-FGENADPE 422
Query: 1110 EIVEAAKAANAHDFIAGLNEGYDT 1133
+I+EAAK A H+ I L +GYDT
Sbjct: 423 KIIEAAKLAGVHELILRLPDGYDT 446
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 1e-21
Identities = 75/251 (29%), Positives = 115/251 (45%), Gaps = 50/251 (19%)
Query: 375 ESIIFKDFCLTIPAGKTVALVGGSGSGKS----TVIALL-QRFYAPLGGEIILDGVSIDK 429
K I AG+T+ALVG SGSGKS +++ LL A G I+ DG +
Sbjct: 22 TVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLA 81
Query: 430 L---QLKWLR-SQMGLVSQEPALFATS----------IKENIL----FGKEDAS--MEEV 469
QL+ +R +++G++ QEP TS + E + + A E+
Sbjct: 82 ASERQLRGVRGNKIGMIFQEP---MTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALEL 138
Query: 470 IEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSA 529
+E + P ++SGGQ+QR+ IA A+ P +L+ DE T+A
Sbjct: 139 LELVGIPEPEKRLDAYPH-----------ELSGGQRQRVMIAMALANEPDLLIADEPTTA 187
Query: 530 LDSESERVVQ-EALD-----KAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHD 582
LD VQ + LD +A +G + I H L +R AD + V+Q G+++ETG+ +
Sbjct: 188 LDVT----VQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTE 243
Query: 583 ELIQAESGLYT 593
L A YT
Sbjct: 244 TLFAAPQHPYT 254
|
Length = 534 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 95.5 bits (238), Expect = 2e-21
Identities = 74/239 (30%), Positives = 124/239 (51%), Gaps = 31/239 (12%)
Query: 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI 420
+E + ++++YP E++ K G+ VAL+G +G+GKST+ P GE+
Sbjct: 2 LETRDLKYSYPDGTEAL--KGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEV 59
Query: 421 ILDGVSI--DKLQLKWLRSQMGLVSQEP--ALFATSIKENILFG------KEDASMEEVI 470
++ G I DK L +R +G+V Q P LFA +++E++ FG ++ + V
Sbjct: 60 LIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVK 119
Query: 471 EAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSAL 530
EA KA F + P +SGGQK+R+AIA + P I++LDE TS L
Sbjct: 120 EALKAVGMEGFENKPPHH-----------LSGGQKKRVAIAGILAMKPEIIVLDEPTSGL 168
Query: 531 D----SESERVVQEALDKAVVGRTTIIIAHRLSTI-RNADVIAVVQDGQVMETGSHDEL 584
D S+ +++ + L+K G T II H + + AD + V+ DG++++ G+ E+
Sbjct: 169 DPMGASQIMKLLYD-LNKE--GITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEV 224
|
Length = 275 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 95.1 bits (236), Expect = 2e-21
Identities = 66/215 (30%), Positives = 106/215 (49%), Gaps = 20/215 (9%)
Query: 384 LTIPAGKTVALVGGSGSGKSTVIALLQRFY-----APLGGEIILDGVSI--DKLQLKWLR 436
+ I AL+G SG GKST + L R + G +I +G +I + + LR
Sbjct: 28 IKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELR 87
Query: 437 SQMGLVSQEPALFATSIKENILFG------KEDASMEEVIEAAKASNAHNFIRQLPQQYD 490
++G+V Q P F SI +NI +G K+ ++E++E + +A L +
Sbjct: 88 RKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSA------LWNEVK 141
Query: 491 TQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRT 550
++ + +SGGQ+QR+ IAR + P ++L+DE TSALD S ++E + T
Sbjct: 142 DKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYT 201
Query: 551 TIIIAHRLSTI-RNADVIAVVQDGQVMETGSHDEL 584
II+ H + R +D A +G + E S DEL
Sbjct: 202 IIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDEL 236
|
Length = 254 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 96.6 bits (241), Expect = 2e-21
Identities = 76/220 (34%), Positives = 110/220 (50%), Gaps = 34/220 (15%)
Query: 385 TIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSI---DKLQLKWLRSQMGL 441
T+ GKT+A+VG SG GKST+ LL P GGE+ G + D K LR ++ +
Sbjct: 37 TLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQI 96
Query: 442 VSQEPALFAT--------SIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQV 493
V Q P + + I E L S E E A A A +R P+ YD
Sbjct: 97 VFQNP--YGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLR--PEHYD--- 149
Query: 494 GERGVQM-SGGQKQRIAIARAIIKAPRILLLDEATSALD-SESERV------VQEALDKA 545
R M SGGQ+QRIAIARA++ P +++ DE SALD S +V +Q+ L +
Sbjct: 150 --RYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLS 207
Query: 546 VVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584
V I+H LS + + AD + V+ G+ +E G+ +++
Sbjct: 208 YV-----FISHDLSVVEHIADEVMVMYLGRCVEKGTKEQI 242
|
Length = 327 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 94.7 bits (235), Expect = 2e-21
Identities = 68/239 (28%), Positives = 117/239 (48%), Gaps = 23/239 (9%)
Query: 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFY-----A 414
+++ + V F Y + K+ + P + A++G SG GKST++ L R A
Sbjct: 4 KIKIRGVNFFYHKHQ---VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGA 60
Query: 415 PLGGEIILDGVSI--DKLQLKWLRSQMGLVSQEPALFATSIKENILFGKE------DASM 466
L G ++LD +I L + LR ++G+V Q+P F SI +N+ FG + +
Sbjct: 61 RLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRL 120
Query: 467 EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEA 526
+EV+E + A L + + + G+ +SGGQ+QR+ IAR + P ++L+DE
Sbjct: 121 DEVVEKSLRQAA------LWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEP 174
Query: 527 TSALDSESERVVQEALDKAVVGRTTIIIAHRL-STIRNADVIAVVQDGQVMETGSHDEL 584
SALD S ++E + + T I+ H + R +D + G ++E G E+
Sbjct: 175 CSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEI 233
|
Length = 251 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 94.4 bits (235), Expect = 2e-21
Identities = 72/224 (32%), Positives = 109/224 (48%), Gaps = 39/224 (17%)
Query: 384 LTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSID--------KLQLKWL 435
L + G+ VA++G SGSGK+T++ + P G I + ++ID K ++ L
Sbjct: 24 LEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQL 83
Query: 436 RSQMGLVSQEPALFA-TSIKENILFGK---EDASMEEVIEAAKASNAHNFIRQLPQQYDT 491
R +G V Q LF ++ ENI+ G + EE A+ A
Sbjct: 84 RQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLA------------- 130
Query: 492 QVGERGVQ------MSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDK- 544
+VG G + +SGGQ+QR+AIARA+ P ++L DE TSALD E +V E L+
Sbjct: 131 KVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPE---LVGEVLNTI 187
Query: 545 ---AVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584
A RT +I+ H +S R+ AD + G+++E G L
Sbjct: 188 RQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKAL 231
|
Length = 250 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 93.2 bits (232), Expect = 3e-21
Identities = 45/119 (37%), Positives = 72/119 (60%), Gaps = 5/119 (4%)
Query: 999 TGNIELQNVHFAY-PARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPL 1057
G IE++N+ Y P P V+ + S K++AG+ +VG++G+GKST+I + RF +
Sbjct: 4 HGEIEVENLSVRYAPDLPPVL--KNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAE 61
Query: 1058 KGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAK 1116
+G ++ID DI + L LR + ++ Q+PTLF+GTIR N+ DE + EI A +
Sbjct: 62 EGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNL--DPFDEYSDEEIYGALR 118
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 94.1 bits (234), Expect = 3e-21
Identities = 49/134 (36%), Positives = 72/134 (53%), Gaps = 13/134 (9%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
IE + V ++ I + S+K E G +VG SG+GKST+I LI R DP +G +
Sbjct: 4 IEFKEVSYS---SFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSI 60
Query: 1062 KIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAH 1121
ID DI++ + LRR I +V Q+P LF GT+++NI YG ++ K +
Sbjct: 61 LIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPM--------LKGEKNVDVE 112
Query: 1122 DF--IAGLNEGYDT 1133
+ I GLN+ Y T
Sbjct: 113 YYLSIVGLNKEYAT 126
|
Length = 241 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 94.4 bits (235), Expect = 3e-21
Identities = 61/196 (31%), Positives = 103/196 (52%), Gaps = 28/196 (14%)
Query: 381 DFCLTIPAGKTVALVGGSGSGKSTVIALLQRFY-----APLGGEIILD-----GVSIDKL 430
D L I A +G SG GKSTV+ L R + A + GE++LD G +D +
Sbjct: 22 DVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81
Query: 431 QLKWLRSQMGLVSQEPALFAT-SIKENILFG------KEDASMEEVIEAA-KASNAHNFI 482
+ R +G+V Q P F T SI++N++ G + ++E++E + + +N N +
Sbjct: 82 AV---RRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEV 138
Query: 483 RQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEAL 542
+ ++ + G +SGGQ+QR+ IARAI P +LL+DE SALD S +++ +
Sbjct: 139 KD-------RLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLI 191
Query: 543 DKAVVGRTTIIIAHRL 558
++ T +I+ H +
Sbjct: 192 NELKQDYTIVIVTHNM 207
|
Length = 258 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 94.3 bits (234), Expect = 3e-21
Identities = 73/214 (34%), Positives = 114/214 (53%), Gaps = 16/214 (7%)
Query: 393 ALVGGSGSGKSTVIALLQRFY-----APLGGEIILDGVSI--DKLQLKWLRSQMGLVSQE 445
AL+G SG GKST + L R + GEI +G +I K+ L LR ++G+V Q+
Sbjct: 34 ALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQ 93
Query: 446 PALFATSIKENILFGKEDASME--EVIEAAKASNAHNFIRQLPQQYDTQVG-ERGVQ-MS 501
P F S+ +N+ +G + A ++ E+I+ ++Q +T+ +R Q S
Sbjct: 94 PTPFPFSVYDNVAYGLKIAGVKDKELID----QRVEESLKQAAIWKETKDNLDRNAQAFS 149
Query: 502 GGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTI 561
GGQ+QRI IARA+ P+++LLDE TSALD S ++E L + T I++ H L
Sbjct: 150 GGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQA 209
Query: 562 -RNADVIAVVQDGQVMETGSHDELIQAESGLYTS 594
R +D A + +G ++E G +E+ A TS
Sbjct: 210 GRISDQTAFLMNGDLIEAGPTEEMFIAPKKQITS 243
|
Length = 251 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 93.2 bits (231), Expect = 3e-21
Identities = 61/202 (30%), Positives = 106/202 (52%), Gaps = 12/202 (5%)
Query: 381 DFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ-- 438
+ + IP G+ +VG G GKS+++ + L G++ + + + RS+
Sbjct: 19 NINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNR 78
Query: 439 --MGLVSQEPALFATSIKENILFGK--EDASMEEVIEAAKASNAHNFIRQLPQQYDTQVG 494
+ +Q+P L +++ENI FG + V +A I LP T++G
Sbjct: 79 YSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPD---IDLLPFGDQTEIG 135
Query: 495 ERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSE-SERVVQEALDKAVVG--RTT 551
ERG+ +SGGQ+QRI +ARA+ + I+ LD+ SALD S+ ++QE + K + RT
Sbjct: 136 ERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTL 195
Query: 552 IIIAHRLSTIRNADVIAVVQDG 573
+++ H+L + +AD I ++DG
Sbjct: 196 VLVTHKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 93.8 bits (233), Expect = 4e-21
Identities = 68/223 (30%), Positives = 107/223 (47%), Gaps = 24/223 (10%)
Query: 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFY-----APLGGEIILDGVSIDKLQL 432
+ L IP AL+G SGSGKST++ + R A + GE+ LDG I K+ +
Sbjct: 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDV 77
Query: 433 KWLRSQMGLVSQEPALFAT-SIKENILFG-------KEDASMEEVIEAA--KASNAHNFI 482
LR ++ +V Q P SI EN+ G K ++E + A KA
Sbjct: 78 IELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKA------- 130
Query: 483 RQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEAL 542
QL + ++ ++SGGQ+QR+ IARA+ P +LL DE T+ LD E+ ++
Sbjct: 131 -QLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLF 189
Query: 543 DKAVVGRTTIIIAH-RLSTIRNADVIAVVQDGQVMETGSHDEL 584
+ T +++ H R +D +A + GQ++E G E+
Sbjct: 190 LELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREV 232
|
Length = 250 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 91.1 bits (227), Expect = 5e-21
Identities = 40/103 (38%), Positives = 57/103 (55%), Gaps = 13/103 (12%)
Query: 1002 IELQNVHFAYP--ARPDVMIFEGFSIKIEAGKSTALVGQSGSGKST----IIGLIERFYD 1055
+E++NV F YP P + S IE G+S A++G SGSGKST I+GL+
Sbjct: 1 LEVENVSFRYPGAEPP---VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR---- 53
Query: 1056 PLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENI 1098
P G V++D DI + L H+ + Q+ LF+G+I ENI
Sbjct: 54 PTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENI 96
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 95.9 bits (239), Expect = 5e-21
Identities = 73/220 (33%), Positives = 113/220 (51%), Gaps = 25/220 (11%)
Query: 378 IFKDFCLTIPAGKTVALVGGSGSGKST---VIALLQRFYAPLGGEIILDGVSIDKLQLKW 434
KD L++ G+ V L+G SG GK+T +IA L+R G I G I +L +
Sbjct: 19 ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER---QTAGTIYQGGRDITRLPPQ- 74
Query: 435 LRSQMGLVSQEPALFAT-SIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQV 493
+ G+V Q ALF ++ +NI +G ++ M A + + + + LP
Sbjct: 75 -KRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLV-GLPGSERKYP 132
Query: 494 GERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDS-ESERVVQE--ALDKAVVGRT 550
G Q+SGGQ+QR+A+ARA+ +P +LLLDE SALD+ E + E L + +G T
Sbjct: 133 G----QLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRR-LGVT 187
Query: 551 TIIIAH----RLSTIRNADVIAVVQDGQVMETGSHDELIQ 586
TI++ H LS AD I V+ G + + G+ E+ +
Sbjct: 188 TIMVTHDQEEALSM---ADRIVVMNHGVIEQVGTPQEIYR 224
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 92.1 bits (230), Expect = 6e-21
Identities = 41/119 (34%), Positives = 65/119 (54%), Gaps = 4/119 (3%)
Query: 1003 ELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVK 1062
EL+N+ F+YP + S+ I+ G+ +VG +GSGKST++ L+ P G+V
Sbjct: 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVL 59
Query: 1063 IDDRDIRSYHLRSLRRHIALVSQEPT--LFAGTIRENIAYGASDE-IDESEIVEAAKAA 1118
+D +D+ L+ LRR + LV Q P F T+ E +A+G + + E EI E + A
Sbjct: 60 VDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEA 118
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 93.9 bits (233), Expect = 6e-21
Identities = 68/200 (34%), Positives = 102/200 (51%), Gaps = 18/200 (9%)
Query: 381 DFCLTIPAGKTVALVGGSGSGKSTVIALLQRFY-----APLGGEIILDGVSI--DKLQLK 433
D L IPA K +A +G SG GKST++ R A + G ++ +I ++
Sbjct: 38 DVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSV 97
Query: 434 WLRSQMGLVSQEPALFATSIKENILFGKE----DASMEEVIEAAKASNAHNFIRQLPQQY 489
LR Q+G+V Q P F SI ENI F +++E++E + A + ++
Sbjct: 98 KLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAA------IWEEV 151
Query: 490 DTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGR 549
++ E+G +SGGQ+QR+ IARAI P +LL+DE SALD S R V+E +
Sbjct: 152 KDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQY 211
Query: 550 TTIIIAHRLSTI-RNADVIA 568
T I++ H + R AD A
Sbjct: 212 TIIMVTHNMQQASRVADWTA 231
|
Length = 274 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 90.8 bits (226), Expect = 7e-21
Identities = 30/97 (30%), Positives = 60/97 (61%), Gaps = 2/97 (2%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
+ + NV F+YP + + + + S++++ G+ AL+G+SGSGKST++ L+ P +G++
Sbjct: 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI 59
Query: 1062 KIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENI 1098
+D + ++L I++++Q P LF T+R N+
Sbjct: 60 TLDGVPVSDLE-KALSSLISVLNQRPYLFDTTLRNNL 95
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 93.6 bits (232), Expect = 7e-21
Identities = 69/236 (29%), Positives = 120/236 (50%), Gaps = 25/236 (10%)
Query: 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI 420
+E + + F Y + +I G+ V+++G +GSGKST L+ + G++
Sbjct: 5 LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV 64
Query: 421 ILDGVSIDKLQLKWLRSQMGLVSQEP--ALFATSIKENILFGKEDASM--EEVI----EA 472
+DG + + LR ++G+V Q P ++++++ FG E+ + EE+I EA
Sbjct: 65 KIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEA 124
Query: 473 AKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALD- 531
A N +F + P ++SGGQKQR+A+A I P I++LDE+TS LD
Sbjct: 125 LLAVNMLDFKTREP-----------ARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDP 173
Query: 532 ---SESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDEL 584
E RV+ E +K + T + I H L ++D I V++ G++++ + EL
Sbjct: 174 TGRQEIMRVIHEIKEKYQL--TVLSITHDLDEAASSDRILVMKAGEIIKEAAPSEL 227
|
Length = 277 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 89.8 bits (224), Expect = 9e-21
Identities = 55/201 (27%), Positives = 89/201 (44%), Gaps = 64/201 (31%)
Query: 384 LTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVS 443
L++ G+ AL+G +G+GKST++ +L Y P GEI++DG
Sbjct: 21 LSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDG------------------- 61
Query: 444 QEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQM--- 500
+ FA+ +A +A G+ M
Sbjct: 62 -KEVSFAS-----------------PRDARRA---------------------GIAMVYQ 82
Query: 501 -SGGQKQRIAIARAIIKAPRILLLDEATSAL-DSESERVVQEALDKAVVGRTTIIIAHRL 558
S G++Q + IARA+ + R+L+LDE T+AL +E ER+ + G I I+HRL
Sbjct: 83 LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRL 142
Query: 559 STIRN-ADVIAVVQDGQVMET 578
+ AD + V++DG+V+ T
Sbjct: 143 DEVFEIADRVTVLRDGRVVGT 163
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 94.1 bits (234), Expect = 1e-20
Identities = 68/234 (29%), Positives = 115/234 (49%), Gaps = 33/234 (14%)
Query: 380 KDFCLTIPAGKTVALVGGSGSGKSTVIALLQRF-----YAPLGGEIILDGVSI--DKLQL 432
K + IP AL+G SG GKST + L R A + G + LDG I D + L
Sbjct: 62 KGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNL 121
Query: 433 KWLRSQMGLVSQEPALFATSIKENI-----------------LFGKEDASME-EVIEAAK 474
LR ++G+V Q P F SI+ENI L G++D E E++E +
Sbjct: 122 VELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSL 181
Query: 475 ASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSES 534
A L + + ++ + + +SGGQ+QR+ IAR + P ++L+DE SALD +
Sbjct: 182 RQAA------LWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIA 235
Query: 535 ERVVQEALDKAVVGRTTIIIAHRL-STIRNADVIAV-VQDGQVMETGSHDELIQ 586
+++ +++ T +++ H + R +D AV + G+++E D++ +
Sbjct: 236 TSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELVEYDDTDKIFE 289
|
Length = 305 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.8 bits (230), Expect = 1e-20
Identities = 73/252 (28%), Positives = 123/252 (48%), Gaps = 32/252 (12%)
Query: 354 LENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFY 413
+ ++ ++ K + F Y + S + + I K A++G SG GKST I L R
Sbjct: 1 NQQLIPAIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRI- 56
Query: 414 APLGGEIILDGVSID---------KLQLKWLRSQMGLVSQEPALFATSIKENILFG---- 460
+ L G + ++GV +D ++ + LR Q+G+V Q P F SI EN+ +G
Sbjct: 57 SELEGPVKVEGV-VDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRIS 115
Query: 461 --KEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAP 518
A ++E++E+A A L Q+ ++ + + +SGGQ+QR+ IARA+ P
Sbjct: 116 AKLPQADLDEIVESALKGAA------LWQEVKDKLNKSALGLSGGQQQRLCIARALAIKP 169
Query: 519 RILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRL-STIRNADVIAVVQD----- 572
++LL+DE SALD + V+E + T I+ H + R +D A
Sbjct: 170 KVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRI 229
Query: 573 GQVMETGSHDEL 584
GQ++E G ++
Sbjct: 230 GQMVEFGVTTQI 241
|
Length = 259 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 97.0 bits (242), Expect = 1e-20
Identities = 74/219 (33%), Positives = 116/219 (52%), Gaps = 30/219 (13%)
Query: 384 LTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG--L 441
T+ AG+ AL+GG+G+GKST++ ++ P G + + G +L Q+G L
Sbjct: 32 FTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLT-PAKAHQLGIYL 90
Query: 442 VSQEPALFAT-SIKENILFG--KEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGV 498
V QEP LF S+KENILFG K ASM+++ + A D+ G V
Sbjct: 91 VPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQ-------LDLDSSAGSLEV 143
Query: 499 QMSGGQKQRIAIARAIIKAPRILLLDEATSALD-SESERV---VQEALDKAVVGRTTIII 554
+Q + I R +++ RIL+LDE T++L +E+ER+ ++E L + V + I
Sbjct: 144 ----ADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGV---GIVFI 196
Query: 555 AHRLSTIRN-ADVIAVVQDGQV-----METGSHDELIQA 587
+H+L IR AD I+V++DG + S D++IQA
Sbjct: 197 SHKLPEIRQLADRISVMRDGTIALSGKTADLSTDDIIQA 235
|
Length = 510 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 91.4 bits (227), Expect = 1e-20
Identities = 58/209 (27%), Positives = 102/209 (48%), Gaps = 23/209 (11%)
Query: 381 DFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440
F LT G+ A+VG SGSGKST++ L+ F P G ++++GV D +
Sbjct: 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGV--DVTAAPPADRPVS 73
Query: 441 LVSQEPALFA-TSIKENILFG-----KEDASMEEVIEAAKASNA-HNFIRQLPQQYDTQV 493
++ QE LFA ++++N+ G K A + IE A A ++LP
Sbjct: 74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPG------ 127
Query: 494 GERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDK--AVVGRTT 551
++SGG++QR+A+AR +++ +LLLDE +ALD + + + A T
Sbjct: 128 -----ELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTV 182
Query: 552 IIIAHRLSTIRN-ADVIAVVQDGQVMETG 579
+++ H+ + A + + +G++ G
Sbjct: 183 LMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 91.7 bits (228), Expect = 1e-20
Identities = 57/198 (28%), Positives = 99/198 (50%), Gaps = 19/198 (9%)
Query: 375 ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKW 434
++ I + ++ AG+ + G SG GKST++ ++ +P G ++ +G I L+ +
Sbjct: 19 DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEI 78
Query: 435 LRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVG 494
R Q+ +Q P LF ++ +N++F + ++ A + F LP DT +
Sbjct: 79 YRQQVSYCAQTPTLFGDTVYDNLIFPWQ-IRNQQPDPAIFLDDLERF--ALP---DTILT 132
Query: 495 ERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIII 554
+ ++SGG+KQRI++ R + P++LLLDE TSALD ++ V E I
Sbjct: 133 KNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNE-------------I 179
Query: 555 AHRLSTIRNADVIAVVQD 572
HR +N V+ V D
Sbjct: 180 IHRYVREQNIAVLWVTHD 197
|
Length = 225 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 91.6 bits (228), Expect = 1e-20
Identities = 64/218 (29%), Positives = 113/218 (51%), Gaps = 28/218 (12%)
Query: 375 ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKL---Q 431
++ + K L+I G+ VA+VG SGSGKST++ LL P GE++ +G S+ KL +
Sbjct: 17 DTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNE 76
Query: 432 LKWLRSQ-MGLVSQEPALFAT-SIKENI----LFGKEDASMEEVIEAA----KASNAHNF 481
LR++ +G + Q L + EN+ L GK+ S++E E A + +
Sbjct: 77 RAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKK--SVKEAKERAYEMLEKVGLEHR 134
Query: 482 IRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEA 541
I P + +SGG++QR+AIARA++ P ++L DE T LD+ + +++ +
Sbjct: 135 INHRPSE-----------LSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDL 183
Query: 542 LDKAVVGRTT--IIIAHRLSTIRNADVIAVVQDGQVME 577
+ + T +++ H L + D + ++DGQ+
Sbjct: 184 MLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLFN 221
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 91.1 bits (227), Expect = 1e-20
Identities = 55/204 (26%), Positives = 97/204 (47%), Gaps = 24/204 (11%)
Query: 384 LTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVS 443
L + G+ +G +G+GK+T + ++ P GEI DG S K ++G +
Sbjct: 21 LHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEAL--RRIGALI 78
Query: 444 QEPALFAT-SIKENI-----LFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERG 497
+ P + + +EN+ L G ++EV++ + L +V
Sbjct: 79 EAPGFYPNLTARENLRLLARLLGIRKKRIDEVLD----------VVGLKDSAKKKVK--- 125
Query: 498 VQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEAL-DKAVVGRTTIIIAH 556
S G KQR+ IA A++ P +L+LDE T+ LD + + ++E + G T +I +H
Sbjct: 126 -GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSH 184
Query: 557 RLSTIRN-ADVIAVVQDGQVMETG 579
LS I+ AD I ++ G+++E G
Sbjct: 185 LLSEIQKVADRIGIINKGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 92.6 bits (230), Expect = 2e-20
Identities = 71/254 (27%), Positives = 125/254 (49%), Gaps = 32/254 (12%)
Query: 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI 420
++ + + + Y ++ K + I G+ A++GG+G+GKST+ L P G I
Sbjct: 6 LKVEELNYNYSDGTHAL--KGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI 63
Query: 421 ILDGVSID--KLQLKWLRSQMGLVSQEP--ALFATSIKENILFG------KEDASMEEVI 470
+ DG ID + L LR +G+V Q+P LF+ S+ +++ FG ED + V
Sbjct: 64 LFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVD 123
Query: 471 EA-AKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSA 529
A + H ++ P +S GQK+R+AIA ++ P++L+LDE T+
Sbjct: 124 NALKRTGIEH--LKDKPTHC----------LSFGQKKRVAIAGVLVMEPKVLVLDEPTAG 171
Query: 530 LD----SESERVVQEALDKAVVGRTTIIIAHRLSTIR-NADVIAVVQDGQVMETGSHDEL 584
LD SE +++ E + +G T II H + + D + V+++G+V+ G+ E+
Sbjct: 172 LDPMGVSEIMKLLVEMQKE--LGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEV 229
Query: 585 IQAESGLYTSLVRL 598
+ L +RL
Sbjct: 230 FAEKEMLRKVNLRL 243
|
Length = 283 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.0 bits (228), Expect = 2e-20
Identities = 65/217 (29%), Positives = 111/217 (51%), Gaps = 25/217 (11%)
Query: 380 KDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFY-----APLGGEIILDGVSI--DKLQL 432
KD + P A++G SG GKSTV+ + R + A + G+I+LD I +
Sbjct: 21 KDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDP 80
Query: 433 KWLRSQMGLVSQEPALF-ATSIKENILFG--------KEDASMEEVIEAAKASNAHNFIR 483
+R ++G+V Q+P F A SI +N++ G + +A +E++E++ A
Sbjct: 81 VSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEA--DEIVESSLKRVA----- 133
Query: 484 QLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALD 543
L + ++ +++SGGQ+QR+ IAR I P ++L+DE SALD S ++E ++
Sbjct: 134 -LWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIE 192
Query: 544 KAVVGRTTIIIAHRL-STIRNADVIAVVQDGQVMETG 579
+ T II+ H + R +D A G ++E G
Sbjct: 193 ELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECG 229
|
Length = 252 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 92.6 bits (230), Expect = 2e-20
Identities = 75/244 (30%), Positives = 116/244 (47%), Gaps = 33/244 (13%)
Query: 361 VEFKCVQFAY-PSRP-ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYA---P 415
++F+ V + Y P P E + + G VALVG +GSGKST L+Q F A P
Sbjct: 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKST---LMQHFNALLKP 59
Query: 416 LGGEIILDGVSID----KLQLKWLRSQMGLVSQ--EPALFATSIKENILFGKED--ASME 467
G I + G I LK LR ++ LV Q E LF ++ +++ FG ++ S +
Sbjct: 60 SSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSED 119
Query: 468 EVIEAAKASNAHNFIRQLPQQYDTQVGERG-VQMSGGQKQRIAIARAIIKAPRILLLDEA 526
E E A +++++ + + ++SGGQ +R+AIA + P IL LDE
Sbjct: 120 EAKEKAL-----KWLKKV--GLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEP 172
Query: 527 TSALDSES-ERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELI 585
+ LD E + ++Q D G T I++ H + DV D V+E H +LI
Sbjct: 173 AAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-----DVAEYADDVLVLE---HGKLI 224
Query: 586 QAES 589
+ S
Sbjct: 225 KHAS 228
|
Length = 287 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 91.4 bits (227), Expect = 2e-20
Identities = 58/214 (27%), Positives = 106/214 (49%), Gaps = 20/214 (9%)
Query: 380 KDFCLTIPAGKTVALVGGSGSGKSTVIALLQRF-----YAPLGGEIILDGVSI--DKLQL 432
D ++IP + AL+G SG GKST++ R + G+I+ +G +I +
Sbjct: 23 YDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82
Query: 433 KWLRSQMGLVSQEPALFATSIKENILFG------KEDASMEEVIEAAKASNAHNFIRQLP 486
LR ++G+V Q P F SI EN+ +G K +++ ++E + A L
Sbjct: 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAA------LW 136
Query: 487 QQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV 546
+ ++ + + +SGGQ+QR+ IAR + P ++L+DE SALD + +++ ++
Sbjct: 137 DEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLK 196
Query: 547 VGRTTIIIAHRLS-TIRNADVIAVVQDGQVMETG 579
T II+ H + R +D + G+++E
Sbjct: 197 KEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFD 230
|
Length = 253 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 95.5 bits (238), Expect = 4e-20
Identities = 92/342 (26%), Positives = 160/342 (46%), Gaps = 41/342 (11%)
Query: 809 AVTIAFTMGLFIAWRLALVMIAVQPL--VIICFYARRVLLKSMSNKAIKAQAESSKL--- 863
AV I M I+W+L L+ + P+ ++I Y + + + AQA S L
Sbjct: 126 AVLIV--MSTQISWQLTLLALLPMPVMAIMIKRYGDQ-----LHERFKLAQAAFSSLNDR 178
Query: 864 AAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIR---------QSWYAGIGLAFSQS 914
E+++++R I AF + R + + ++++R + Y IG+A +
Sbjct: 179 TQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLA 238
Query: 915 LASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGS 974
+ +W + G + G ++S ++ MI ++A A M + +GS A
Sbjct: 239 IGGGSWMV--VNGS--LTLGQLTSFVMYLGLMIW----PMLALAW-MFNIVERGSAAYSR 289
Query: 975 VFAVMDRYTKIEPEDPEGHQP---ERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGK 1031
+ A++ P +G +P R ++ ++ F YP D E + ++ G+
Sbjct: 290 IRAMLAE----APVVKDGSEPVPEGRGELDVNIR--QFTYPQT-DHPALENVNFTLKPGQ 342
Query: 1032 STALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFA 1091
+ G +GSGKST++ LI+R +D +GD++ D + L S R +A+VSQ P LF+
Sbjct: 343 MLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFS 402
Query: 1092 GTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133
T+ NIA G D + EI A+ A+ HD I L +GYDT
Sbjct: 403 DTVANNIALGRPDATQQ-EIEHVARLASVHDDILRLPQGYDT 443
|
Length = 569 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 90.8 bits (225), Expect = 4e-20
Identities = 64/208 (30%), Positives = 101/208 (48%), Gaps = 20/208 (9%)
Query: 384 LTIPAGKTVALVGGSGSGKSTVIALLQRFY-----APLGGEIILDGVSI--DKLQLKWLR 436
L + AL+G SG GKST + L R + G + L G +I + LR
Sbjct: 26 LDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLR 85
Query: 437 SQMGLVSQEPALFATSIKENILFG------KEDASMEEVIEAAKASNAHNFIRQLPQQYD 490
Q+G+V Q+P F SI EN+++G K+ A ++E +E + A + +
Sbjct: 86 KQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAA------IWDEVK 139
Query: 491 TQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRT 550
+ E + +SGGQ+QR+ IAR + P ++LLDE TSALD S ++ L + T
Sbjct: 140 DHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYT 199
Query: 551 TIIIAHRLSTI-RNADVIAVVQDGQVME 577
I++ H + R +D A G ++E
Sbjct: 200 IILVTHSMHQASRISDKTAFFLTGNLIE 227
|
Length = 252 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.8 bits (225), Expect = 5e-20
Identities = 71/236 (30%), Positives = 121/236 (51%), Gaps = 39/236 (16%)
Query: 375 ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSI------- 427
E + K L AG ++++G SGSGKST + + P G I+++G +I
Sbjct: 17 EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKD 76
Query: 428 ------DKLQLKWLRSQMGLVSQEPALFA-TSIKENILFGKEDASMEEVIEAAKASNAHN 480
DK QL+ LR+++ +V Q L++ ++ EN+ ME I+ S
Sbjct: 77 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENV--------MEAPIQVLGLSKQE- 127
Query: 481 FIRQLPQQYDTQVG--ERG-----VQMSGGQKQRIAIARAIIKAPRILLLDEATSALD-- 531
R+ +Y +VG ER V +SGGQ+QR++IARA+ P +LL DE TSALD
Sbjct: 128 -ARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPE 186
Query: 532 --SESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584
E R++Q+ ++ G+T +++ H + R+ + + + G++ E G+ ++L
Sbjct: 187 LVGEVLRIMQQLAEE---GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQL 239
|
Length = 257 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 95.2 bits (237), Expect = 6e-20
Identities = 122/509 (23%), Positives = 210/509 (41%), Gaps = 87/509 (17%)
Query: 663 PSFRRLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKK---- 718
P+ +RL+A +P K L + L+ A A G ++ YF+ D+ K
Sbjct: 9 PTLKRLLAYGSPWRKPLGLAVL--MLWVAAA---AEVSGPLLISYFI-DNMVAKGNLPLG 62
Query: 719 -TSIYAFCFLGLAVFTLVINIIQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENS 777
+ A ++GL + ++ Q F + +++R ++ L + FD
Sbjct: 63 LVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAVGVVQQLRTDVMDAALRQPLSAFDT--QP 120
Query: 778 SGAICSRLAKDANVVRSLVGDRTALLVQTISAV--TIAFTMGLFIA-----WRLALVMIA 830
G + SR+ D V+R L V ++ V + A + +A WR+ALV I
Sbjct: 121 VGQLISRVTNDTEVIRDL-------YVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIM 173
Query: 831 VQP--LVIICFY-------ARRVLLKSMSNKAIKAQAESSKLA------AEAVSNLRTIT 875
+ P LV++ Y RRV + LA E ++ + I
Sbjct: 174 IFPAVLVVMVIYQRYSTPIVRRV---------------RAYLADINDGFNEVINGMSVIQ 218
Query: 876 AFSSQHRILKMLEKAQQG---PRRESIRQSWYAGIGLAFSQSLAS----CTWALDFWYGG 928
F Q R + + +A + R +++R G L SL S C + F +
Sbjct: 219 QFRQQARFGERMGEASRSHYMARMQTLRLD---GFLLRPLLSLFSALILCGLLMLFGFSA 275
Query: 929 RLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGS---VFAVMDRYTKI 985
G I L+ L GR+ +TT + AV + VF +MD
Sbjct: 276 S----GTIEVGVLYAFISYL---GRLNEPLIELTTQQSMLQQAVVAGERVFELMDG---- 324
Query: 986 EPEDPEGHQPERIT-GNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKS 1044
P G+ + G I++ NV FAY R D ++ + ++ + + ALVG +GSGKS
Sbjct: 325 -PRQQYGNDDRPLQSGRIDIDNVSFAY--RDDNLVLQNINLSVPSRGFVALVGHTGSGKS 381
Query: 1045 TIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASD 1104
T+ L+ +Y +G++++D R + S LR+ +A+V Q+P + A T N+ G
Sbjct: 382 TLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR-- 439
Query: 1105 EIDESEIVEAAKAANAHDFIAGLNEGYDT 1133
+I E ++ +A + + L +G T
Sbjct: 440 DISEEQVWQALETVQLAELARSLPDGLYT 468
|
Length = 592 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.5 bits (223), Expect = 1e-19
Identities = 43/132 (32%), Positives = 71/132 (53%), Gaps = 20/132 (15%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDP----- 1056
IE+++++ Y D + ++ I K TAL+G SG GKST++ + R D
Sbjct: 8 IEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGAR 64
Query: 1057 LKGDVKIDDRDIRSYHLR--SLRRHIALVSQEPTLFAGTIRENIAYG------ASDEIDE 1108
++G+V +D ++I + LRR + +V Q+P F +I +N+AYG E+D
Sbjct: 65 VEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELD- 123
Query: 1109 SEIVEAA--KAA 1118
EIVE++ KAA
Sbjct: 124 -EIVESSLKKAA 134
|
Length = 253 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 88.4 bits (220), Expect = 1e-19
Identities = 55/230 (23%), Positives = 108/230 (46%), Gaps = 30/230 (13%)
Query: 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI 420
++ + + Y + LT+ G L+G +G+GK+T++ +L P G I
Sbjct: 1 LQLENLTKRYGKK---RALDGVSLTLGPGMY-GLLGPNGAGKTTLMRILATLTPPSSGTI 56
Query: 421 ILDGVSIDKLQLKWLRSQMGLVSQEPALFAT-SIKE---------NILFGKEDASMEEVI 470
+DG + K Q + LR ++G + QE ++ +++E I + A ++EV+
Sbjct: 57 RIDGQDVLK-QPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVL 115
Query: 471 EAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSAL 530
E L + ++G +SGG ++R+ IA+A++ P IL++DE T+ L
Sbjct: 116 ELV----------NLGDRAKKKIG----SLSGGMRRRVGIAQALVGDPSILIVDEPTAGL 161
Query: 531 DSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETG 579
D E + L + R I+ H + + + + +AV+ G+++ G
Sbjct: 162 DPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 90.1 bits (223), Expect = 1e-19
Identities = 70/225 (31%), Positives = 113/225 (50%), Gaps = 28/225 (12%)
Query: 379 FKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFY-----APLGGEIIL--DGVSI---- 427
K+ + + + AL+G SG GKST + R + GEIIL D V+I
Sbjct: 32 LKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPE 91
Query: 428 -DKLQLKWLRSQMGLVSQEPALFATSIKENILFG------KEDASMEEVIEAAKASNAHN 480
D +++ R ++ +V Q+P F SI EN+ +G K + +EE +E A + A
Sbjct: 92 VDPIEV---RMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAA-- 146
Query: 481 FIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQE 540
L + ++G+ +SGGQ+QR+ IARA+ P ILL DE TSALD + ++E
Sbjct: 147 ----LWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEE 202
Query: 541 ALDKAVVGRTTIIIAHRL-STIRNADVIAVVQDGQVMETGSHDEL 584
+ T +I+ H + R +D A + G+++E G+ D +
Sbjct: 203 LISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTI 247
|
Length = 265 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 89.0 bits (221), Expect = 1e-19
Identities = 61/211 (28%), Positives = 100/211 (47%), Gaps = 20/211 (9%)
Query: 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKL---QLKW 434
I K L + G+TVA+VG SGSGKST++A+L P GE+ L G + KL
Sbjct: 25 ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAA 84
Query: 435 LRSQ-MGLVSQEPALFAT-SIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQ 492
LR++ +G V Q L + EN+ E + ++++ + L +
Sbjct: 85 LRARHVGFVFQSFHLIPNLTALENVALPLE-------LRGESSADSRAGAKALLEA--VG 135
Query: 493 VGER----GVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEAL--DKAV 546
+G+R Q+SGG++QR+A+ARA P +L DE T LD + + + L
Sbjct: 136 LGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRE 195
Query: 547 VGRTTIIIAHRLSTIRNADVIAVVQDGQVME 577
G T +++ H D ++ G+++E
Sbjct: 196 RGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226
|
Length = 228 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 1e-19
Identities = 57/231 (24%), Positives = 104/231 (45%), Gaps = 32/231 (13%)
Query: 375 ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKW 434
I D L++P GK AL+G +G GKST++ R P G + L I L +
Sbjct: 14 TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQ 73
Query: 435 LRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAK----------ASNAHNFIRQ 484
L ++ L+ Q E ++ E++ + ++ + + Q
Sbjct: 74 LARRLALLPQ------------HHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQ 121
Query: 485 LPQQYDT-QVGERGV-QMSGGQKQRIAIARAIIKAPRILLLDEATSALD----SESERVV 538
+Q + +R + +SGGQ+QR +A + + ++LLDE T+ LD E R++
Sbjct: 122 AMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLM 181
Query: 539 QEALDKAVVGRTTIIIAHRLS-TIRNADVIAVVQDGQVMETGSHDELIQAE 588
+E + G+T + + H L+ R D + V+ +G VM G+ +E++
Sbjct: 182 RELNTQ---GKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTPG 229
|
Length = 255 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 93.4 bits (233), Expect = 1e-19
Identities = 62/202 (30%), Positives = 107/202 (52%), Gaps = 12/202 (5%)
Query: 384 LTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDG--VSIDKLQLKWLRSQMGL 441
L++ G+ AL+G +G+GKST++ +L Y P GEI +DG V I + +R +G+
Sbjct: 25 LSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPR-DAIRLGIGM 83
Query: 442 VSQEPALFAT-SIKENILFGKEDASMEEVIEAAKASNAHNFIRQ--LPQQYDTQVGERGV 498
V Q L T ++ ENI+ G E + + + + LP D +V +
Sbjct: 84 VHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVAD--- 140
Query: 499 QMSGGQKQRIAIARAIIKAPRILLLDEATSAL-DSESERVVQEALDKAVVGRTTIIIAHR 557
+S G++QR+ I +A+ + R+L+LDE T+ L E++ + + A G+T I I H+
Sbjct: 141 -LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHK 199
Query: 558 LSTIRN-ADVIAVVQDGQVMET 578
L + AD + V++ G+V+ T
Sbjct: 200 LKEVMAIADRVTVLRRGKVVGT 221
|
Length = 501 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 88.8 bits (221), Expect = 2e-19
Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 13/134 (9%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
+E++N+ F Y +P I + S I G+ T ++G +GSGKST++ + P G+V
Sbjct: 3 LEVENLSFGYGGKP---ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEV 59
Query: 1062 KIDDRDIRSYHLRSLRRHIALVSQEPTLFAG-TIRENIAYGAS---------DEIDESEI 1111
+D +DI S + L + +A V Q P+ G T+ E + G + DE +
Sbjct: 60 LLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIV 119
Query: 1112 VEAAKAANAHDFIA 1125
EA +
Sbjct: 120 EEALELLGLEHLAD 133
|
Length = 258 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 92.8 bits (231), Expect = 2e-19
Identities = 77/242 (31%), Positives = 123/242 (50%), Gaps = 40/242 (16%)
Query: 375 ESIIFKDFCLTIPAGKTVALVGGSGSGKSTV-IALLQRFYAPLGGEIILDGVSIDKL--- 430
+++ K+ T+ G+T+ LVG SGSGKST +ALL+ + GEI DG + L
Sbjct: 298 HNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQ--GEIWFDGQPLHNLNRR 355
Query: 431 QLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVI-EAAKASNAHNFIRQLPQQY 489
QL +R ++ +V Q+P +S+ + ++ ++I E + Q QQ
Sbjct: 356 QLLPVRHRIQVVFQDPN---SSLNPRL-------NVLQIIEEGLRVHQPTLSAAQREQQV 405
Query: 490 DTQVGERGV----------QMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQ 539
+ E G+ + SGGQ+QRIAIARA+I P +++LDE TS+LD + VQ
Sbjct: 406 IAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLD----KTVQ 461
Query: 540 E---ALDKAVVGR---TTIIIAHRLSTIRNA--DVIAVVQDGQVMETGSHDELIQAESGL 591
AL K++ + + I+H L +R VI V++ G+V+E G + + A
Sbjct: 462 AQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVI-VLRQGEVVEQGDCERVFAAPQQE 520
Query: 592 YT 593
YT
Sbjct: 521 YT 522
|
Length = 529 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 89.3 bits (221), Expect = 2e-19
Identities = 62/219 (28%), Positives = 107/219 (48%), Gaps = 20/219 (9%)
Query: 380 KDFCLTIPAGKTVALVGGSGSGKSTVIALLQRF-----YAPLGGEIILDGVSI--DKLQL 432
D + I AL+G SG GKST + + R A GEI+ +G++I + +
Sbjct: 38 NDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97
Query: 433 KWLRSQMGLVSQEPALFATSIKENILFG------KEDASMEEVIEAAKASNAHNFIRQLP 486
LR ++G+V Q+P F SI NI + + ++E++E + A L
Sbjct: 98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAA------LW 151
Query: 487 QQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV 546
+ ++ + +SGGQ+QR+ IAR + P +LLLDE SALD S ++E + +
Sbjct: 152 DEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELK 211
Query: 547 VGRTTIIIAHRL-STIRNADVIAVVQDGQVMETGSHDEL 584
+ II+ H + +R +D A +G ++E +++
Sbjct: 212 EEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQI 250
|
Length = 268 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.4 bits (222), Expect = 2e-19
Identities = 69/239 (28%), Positives = 119/239 (49%), Gaps = 20/239 (8%)
Query: 361 VEFKCVQFAYPS-RP-ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGG 418
+ + V + Y + P E D LTI G A +G +GSGKST++ LL + P G
Sbjct: 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQG 62
Query: 419 EIILDGVSI----DKLQLKWLRSQMGLVSQ--EPALFATSIKENILFGKED--ASMEEVI 470
+ +D I +K +R ++GLV Q E LF ++ +++ FG ++ S EE
Sbjct: 63 SVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAE 122
Query: 471 EAAKASNAHNFIRQLPQQYDTQVGERG-VQMSGGQKQRIAIARAIIKAPRILLLDEATSA 529
A+ A I + E+ ++SGGQ +R+AIA + P+IL+LDE T+
Sbjct: 123 ALAREKLALVGI-------SESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAG 175
Query: 530 LDSESERVVQEALDKA-VVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586
LD + + + K G T +++ H + + N AD + V++ G+++ +G ++ Q
Sbjct: 176 LDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQ 234
|
Length = 280 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 87.8 bits (218), Expect = 2e-19
Identities = 65/228 (28%), Positives = 104/228 (45%), Gaps = 24/228 (10%)
Query: 381 DFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP----LGGEIILDGVSIDKLQLKWLR 436
D L++ G+ +ALVG SGSGKS + P GEI+LDG + L ++
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGR- 62
Query: 437 SQMGLVSQEP--ALFATSIKENILFGKEDASMEEVIEAAK-ASNAHNFIRQLPQQYDTQV 493
+ + Q P A N LF + ++E + K + A I + +
Sbjct: 63 -HIATIMQNPRTAF-------NPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPD 114
Query: 494 GERGV-----QMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVG 548
E + Q+SGG QR+ IA A++ P L+ DE T+ LD ++ V + L +
Sbjct: 115 PEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQL 174
Query: 549 RTT--IIIAHRLSTI-RNADVIAVVQDGQVMETGSHDELIQAESGLYT 593
T ++I H L + R AD +AV+ DG+++E G+ E+ T
Sbjct: 175 FGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETT 222
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 89.1 bits (221), Expect = 3e-19
Identities = 63/219 (28%), Positives = 109/219 (49%), Gaps = 20/219 (9%)
Query: 380 KDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPL-----GGEIILDGVSI--DKLQL 432
K+ L I + A++G SG GKST I L R + G+I+ +I +
Sbjct: 41 KNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100
Query: 433 KWLRSQMGLVSQEPALFATSIKENILFG------KEDASMEEVIEAAKASNAHNFIRQLP 486
+ LR+ +G+V Q+P F SI +N+ +G K+ +++E++E + A +
Sbjct: 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAA------IW 154
Query: 487 QQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV 546
+ ++ + +SGGQ+QR+ IAR + P ++L+DE TSALD S V+E + +
Sbjct: 155 DELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELK 214
Query: 547 VGRTTIIIAHRL-STIRNADVIAVVQDGQVMETGSHDEL 584
+ II+ H + R +D A +G V E D++
Sbjct: 215 KDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKI 253
|
Length = 271 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 3e-19
Identities = 57/192 (29%), Positives = 101/192 (52%), Gaps = 20/192 (10%)
Query: 370 YPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDK 429
Y +P +D LT+ +G+ + ++G SG GK+T++ L+ F G I LDG ++
Sbjct: 11 YGGKP---ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEG 67
Query: 430 LQLKWLRSQMGLVSQEPALFA-TSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQ 488
++ G+V Q L ++++N+ FG + A +E++ A Q+ ++
Sbjct: 68 PG-----AERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIA-------HQMLKK 115
Query: 489 YDTQ-VGERGV-QMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDK-- 544
+ +R + Q+SGGQ+QR+ IARA+ P++LLLDE ALD+ + +Q L K
Sbjct: 116 VGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLW 175
Query: 545 AVVGRTTIIIAH 556
G+ ++I H
Sbjct: 176 QETGKQVLLITH 187
|
Length = 255 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 87.6 bits (218), Expect = 3e-19
Identities = 66/232 (28%), Positives = 113/232 (48%), Gaps = 38/232 (16%)
Query: 375 ESIIFKDFCLTIPAGKTVALVGGSGSGKST----VIALLQRFYAPLGGEIILDGVSIDKL 430
+S I + L +P G+ ++G +G GK+T ++ LL G I LDG I KL
Sbjct: 12 QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP----VKSGSIRLDGEDITKL 67
Query: 431 QLKWL-RSQMGLVSQEPALFAT-SIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQ- 487
R+ + V Q +F +++EN+L G + A + R++P
Sbjct: 68 PPHERARAGIAYVPQGREIFPRLTVEENLLTG---------LAALPRRS-----RKIPDE 113
Query: 488 QYD------TQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALD----SESERV 537
Y+ +G RG +SGGQ+Q++AIARA++ P++LLLDE T + + RV
Sbjct: 114 IYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRV 173
Query: 538 VQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQAE 588
++ + G +++ L R AD V++ G+V+ +G+ DEL + +
Sbjct: 174 IRRLRAEG--GMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELDEDK 223
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.2 bits (224), Expect = 3e-19
Identities = 69/221 (31%), Positives = 113/221 (51%), Gaps = 27/221 (12%)
Query: 384 LTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVS 443
LTI G V L+G SG GK+TV+ L+ P G+I +DG + ++ + + +V
Sbjct: 27 LTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDICMVF 84
Query: 444 QEPALFA-TSIKENILFG-------KEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGE 495
Q ALF S+ EN+ +G KE+ + V EA + + F +
Sbjct: 85 QSYALFPHMSLGENVGYGLKMLGVPKEERK-QRVKEALELVDLAGF------------ED 131
Query: 496 RGV-QMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALD--KAVVGRTTI 552
R V Q+SGGQ+QR+A+ARA+I P++LL DE S LD+ R ++E + + T++
Sbjct: 132 RYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSL 191
Query: 553 IIAHRLS-TIRNADVIAVVQDGQVMETGSHDELIQAESGLY 592
+ H S +D + V+ G++M+ GS EL + + +
Sbjct: 192 YVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPASRF 232
|
Length = 351 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 89.8 bits (222), Expect = 4e-19
Identities = 69/232 (29%), Positives = 113/232 (48%), Gaps = 21/232 (9%)
Query: 362 EFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGG--- 418
E + F Y +R + ++ D L I K A +G SG GKST + L + + G
Sbjct: 82 EIRNFNFWYMNRTKHVL-HDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSH 140
Query: 419 --EIILDGVSI--DKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDAS------MEE 468
EI G + K+ LR+++G+V Q+P F SI +N+ +G + +E+
Sbjct: 141 EGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEK 200
Query: 469 VIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATS 528
++E + S A L + + + G +SGGQ+QR+ IARAI P +LL+DE TS
Sbjct: 201 IVEKSLKSAA------LWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTS 254
Query: 529 ALDSESERVVQEALDKAVVGRTTIIIAHRLSTI-RNADVIAVVQDGQVMETG 579
ALD + ++E + + + II+ H ++ R +D G + E G
Sbjct: 255 ALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAG 306
|
Length = 329 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 4e-19
Identities = 55/217 (25%), Positives = 103/217 (47%), Gaps = 16/217 (7%)
Query: 384 LTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVS 443
L + G+ +A++G +G+GKST++ L +P GE+ L+GV ++ + L ++
Sbjct: 22 LDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLP 81
Query: 444 QEPAL-FATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQ-VGERGVQM- 500
Q +L F +++E + G+ + Q D + R +
Sbjct: 82 QNSSLAFPFTVQEVVQMGRIPHR-----SGREPEEDERIAAQALAATDLSGLAGRDYRTL 136
Query: 501 SGGQKQRIAIAR------AIIKAPRILLLDEATSALD-SESERVVQEALDKAVVGRTTII 553
SGG++QR+ +AR + + R L LDE TSALD + ++ A A G +
Sbjct: 137 SGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLA 196
Query: 554 IAHRLS-TIRNADVIAVVQDGQVMETGSHDELIQAES 589
+ H L+ + AD I ++ G+V+ +GS +++ E+
Sbjct: 197 VLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTDET 233
|
Length = 259 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.9 bits (221), Expect = 4e-19
Identities = 71/239 (29%), Positives = 118/239 (49%), Gaps = 17/239 (7%)
Query: 360 EVEFKCVQFAY-PSRP-ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLG 417
++ F+ V+ Y P E D ++IP+G VA++G +GSGKST++ L P
Sbjct: 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTS 61
Query: 418 GEIILDGVSI----DKLQLKWLRSQMGLVSQ--EPALFATSIKENILFGKEDASMEEVIE 471
G + + I +LK LR ++G+V Q E LF +++++I FG + + E
Sbjct: 62 GTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDA 121
Query: 472 AAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALD 531
KA + LP++ + ++SGGQ +R+AIA + P +L+LDE T+ LD
Sbjct: 122 KQKAREMIELV-GLPEELLAR---SPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLD 177
Query: 532 SESERVVQE---ALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586
+ + + E L K G TT+++ H + AD I V+ G V G+ E+
Sbjct: 178 PKGRKEMMEMFYKLHKE-KGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFA 235
|
Length = 290 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 88.1 bits (218), Expect = 4e-19
Identities = 66/227 (29%), Positives = 109/227 (48%), Gaps = 23/227 (10%)
Query: 375 ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFY-----APLGGEIILDGVSI-- 427
E K+ + IP AL+G SG GKST I L R + G++ ++G I
Sbjct: 24 EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYE 83
Query: 428 DKLQLKWLRSQMGLVSQEPALFATSIKENILFG-------KEDASMEEVIEAAKASNAHN 480
+ + LR +G+V Q+P F SI +N+ +G K+D ++ V+E A S A
Sbjct: 84 PDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKD--LDGVVENALRSAA-- 139
Query: 481 FIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQE 540
L + ++ + +SGGQ+QR+ IAR + P+I+L DE TSALD S +++
Sbjct: 140 ----LWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIED 195
Query: 541 ALDKAVVGRTTIIIAHRL-STIRNADVIAVVQDGQVMETGSHDELIQ 586
+ T +I+ H + R +D G+++E G ++
Sbjct: 196 LIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFH 242
|
Length = 258 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 87.4 bits (217), Expect = 5e-19
Identities = 59/222 (26%), Positives = 109/222 (49%), Gaps = 27/222 (12%)
Query: 381 DFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDG------VSIDKLQLKW 434
D L P G+T+ L+G SG+GKS+++ +L P G + + G + ++
Sbjct: 20 DITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79
Query: 435 LRSQMGLVSQEPALFA-TSIKEN-------ILFGKEDASMEEVIEAAKASNAHNFIRQLP 486
LR +G+V Q+ L+ ++++N +L +D ++ + + + + P
Sbjct: 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFP 139
Query: 487 QQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSE-SERVVQEALDKA 545
+SGGQ+QR+AIARA++ P++LL DE T+ALD E + ++V + A
Sbjct: 140 L-----------HLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELA 188
Query: 546 VVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586
G T +I+ H + R A + +++G ++E G Q
Sbjct: 189 ETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTQ 230
|
Length = 242 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 87.6 bits (217), Expect = 7e-19
Identities = 66/224 (29%), Positives = 102/224 (45%), Gaps = 40/224 (17%)
Query: 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKL---QLKW 434
+ + L+I G+TV L+G SG GKST+ LL P G + G + +L Q +
Sbjct: 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRA 85
Query: 435 LRSQMGLVSQ-----------------EPALFATSIKENILFGKEDASMEEVIEAAKASN 477
R + LV Q EP TS+ E+ ++ A + E+++ +
Sbjct: 86 FRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDES----EQKARIAELLDMVGLRS 141
Query: 478 AHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERV 537
+LP+Q +SGGQ QRI IARA+ P++++LDEA S LD + V
Sbjct: 142 ED--ADKLPRQ-----------LSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAV 188
Query: 538 VQEALDK--AVVGRTTIIIAHRLSTI-RNADVIAVVQDGQVMET 578
+ E L K G + I H L + +AV+ GQ++E
Sbjct: 189 ILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEE 232
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 87.0 bits (215), Expect = 1e-18
Identities = 68/222 (30%), Positives = 114/222 (51%), Gaps = 19/222 (8%)
Query: 380 KDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFY-----APLGGEIILDGVSI--DKLQL 432
K+ L + G AL+G SG GK+T + + R + A + G I+LDG I ++
Sbjct: 21 KNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80
Query: 433 KWLRSQMGLVSQEPALFAT-SIKENILFGKEDASM---EEVIEAAKASNAHNFIR--QLP 486
+R ++G+V Q+P F T S+ +N++ G + A + + ++E A+ S +R L
Sbjct: 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERS-----LRGAALW 135
Query: 487 QQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV 546
+ ++ +SGGQ+QR+ IARA+ P ILL+DE TSALD S +++ +
Sbjct: 136 DEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLK 195
Query: 547 VGRTTIIIAHRL-STIRNADVIAVVQDGQVMETGSHDELIQA 587
T II+ H + R +D + G ++E G D+L
Sbjct: 196 KVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFTN 237
|
Length = 252 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 86.8 bits (215), Expect = 1e-18
Identities = 73/252 (28%), Positives = 107/252 (42%), Gaps = 58/252 (23%)
Query: 366 VQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGV 425
V F P R + LT PAGK L+G +GSGKST++ +L R P GEI+LD
Sbjct: 17 VSFRVPGR---TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQ 73
Query: 426 SIDKLQLKWLRSQMGLVSQE-PALFATSIKENIL------------FGKEDASMEEVIEA 472
++ K ++ + Q+ PA +++E + FG D E+V EA
Sbjct: 74 PLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAAD--REKVEEA 131
Query: 473 AKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDS 532
+L +SGG++QR IA + + R LLLDE TSALD
Sbjct: 132 ISLVGLKPLAHRLVD-----------SLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDI 180
Query: 533 ESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQD----------------GQVM 576
+ V + + HRLS R VIAV+ D G+++
Sbjct: 181 AHQVDV-------------LALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMI 227
Query: 577 ETGSHDELIQAE 588
G+ EL++ E
Sbjct: 228 AQGTPAELMRGE 239
|
Length = 265 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 86.0 bits (214), Expect = 1e-18
Identities = 60/221 (27%), Positives = 111/221 (50%), Gaps = 32/221 (14%)
Query: 384 LTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQL-KWLRSQMGLV 442
L + G+ VAL+G +G+GK+T++ + P G II DG I L + R + V
Sbjct: 24 LEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYV 83
Query: 443 SQEPALFAT-SIKENILFG--------KEDASMEEVIEAAKASNAHNFIRQLPQQYDTQV 493
+ +F +++EN+L G ++ +EEV E F R L ++ + +
Sbjct: 84 PEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYEL--------FPR-LKERRNQRA 134
Query: 494 GERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALD-----KAVVG 548
G +SGG++Q +AIARA++ P++LLLDE + L + ++V+E + + G
Sbjct: 135 G----TLSGGEQQMLAIARALMSRPKLLLLDEPSEGL---APKIVEEIFEAIKELRKEGG 187
Query: 549 RTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQAE 588
T +++ AD V+++G+++ +G+ EL+
Sbjct: 188 MTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADP 228
|
Length = 237 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 85.4 bits (212), Expect = 1e-18
Identities = 65/218 (29%), Positives = 105/218 (48%), Gaps = 38/218 (17%)
Query: 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEII-----LDGVSIDKLQL 432
+ D L I G+ V L G SGSGK+T++ L+ + G + L G S + +L
Sbjct: 20 VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGAS--EKEL 77
Query: 433 KWLRSQMGLVSQEPALF-----------ATSIKENILFGKEDASMEEVIEAAKASNAHNF 481
LR +G + Q L A ++ N+ + + ++EA + ++
Sbjct: 78 VQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDY 137
Query: 482 IRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEA 541
P +SGGQKQR+AIARA++ P+++L DE T+ALDS+S R V E
Sbjct: 138 ---YPHN-----------LSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVEL 183
Query: 542 LDKAVV--GRTTIIIAH--RLSTIRNADVIAVVQDGQV 575
+ K G T +I+ H R+ + AD I ++DG++
Sbjct: 184 MQKLAREQGCTILIVTHDNRILDV--ADRIVHMEDGKL 219
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 90.1 bits (224), Expect = 2e-18
Identities = 72/233 (30%), Positives = 120/233 (51%), Gaps = 26/233 (11%)
Query: 381 DFCLTIPAGKTVALVGGSGSGKS-TVIALLQRFYAP----LGGEIILDGVSI---DKLQL 432
D L I AG+T+ALVG SGSGKS T +++L+ +P G+I G S+ + L
Sbjct: 27 DVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTL 86
Query: 433 KWLR-SQMGLVSQEPALFATSIKENILFGKEDASMEEVI--------EAAKASNAHNFIR 483
+ +R +++ ++ QEP + N L E + EV+ EAA+ + R
Sbjct: 87 RGVRGNKIAMIFQEPM-----VSLNPLHTLEK-QLYEVLSLHRGMRREAARGEILNCLDR 140
Query: 484 QLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALD 543
+Q ++ + Q+SGG++QR+ IA A++ P +L+ DE T+ALD + + + L
Sbjct: 141 VGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLR 200
Query: 544 --KAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQAESGLYT 593
+ + + I H LS +R AD +AV+Q+G+ +E L A + YT
Sbjct: 201 ELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATLFSAPTHPYT 253
|
Length = 529 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 86.8 bits (215), Expect = 2e-18
Identities = 60/210 (28%), Positives = 110/210 (52%), Gaps = 19/210 (9%)
Query: 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRS 437
+ K+ L I G+ +A+ G +GSGK++++ L+ P G+I G
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG------------- 98
Query: 438 QMGLVSQEPALFATSIKENILFG--KEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGE 495
++ SQ + +IKENI+FG ++ + V+ KA I + P++ +T +GE
Sbjct: 99 RISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVV---KACQLEEDITKFPEKDNTVLGE 155
Query: 496 RGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEA-LDKAVVGRTTIII 554
G+ +SGGQ+ RI++ARA+ K + LLD LD +E+ + E+ + K + +T I++
Sbjct: 156 GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILV 215
Query: 555 AHRLSTIRNADVIAVVQDGQVMETGSHDEL 584
++ ++ AD I ++ +G G+ EL
Sbjct: 216 TSKMEHLKKADKILILHEGSSYFYGTFSEL 245
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 85.0 bits (211), Expect = 2e-18
Identities = 70/220 (31%), Positives = 114/220 (51%), Gaps = 27/220 (12%)
Query: 382 FCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGL 441
F LT+ G+ VA++G SG+GKST++ L+ F P G + L+G D R + +
Sbjct: 18 FDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNG--QDHTTTPPSRRPVSM 75
Query: 442 VSQEPALFA-TSIKENILFG-----KEDASMEEVIEA-AKASNAHNFIRQLPQQYDTQVG 494
+ QE LF+ ++ +NI G K +A+ E + A A+ + + +LP Q
Sbjct: 76 LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQ------ 129
Query: 495 ERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALD----SESERVVQEALDKAVVGRT 550
+SGGQ+QR+A+AR +++ ILLLDE SALD E +V + + + T
Sbjct: 130 -----LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQL--T 182
Query: 551 TIIIAHRLS-TIRNADVIAVVQDGQVMETGSHDELIQAES 589
++++H L R A VV DG++ G DEL+ ++
Sbjct: 183 LLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSGKA 222
|
Length = 232 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 85.7 bits (212), Expect = 2e-18
Identities = 69/236 (29%), Positives = 112/236 (47%), Gaps = 53/236 (22%)
Query: 382 FCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDG-------------VSID 428
++ AG+ VAL+G SGSGKST++ +L G+I ++G V D
Sbjct: 19 LNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPAD 78
Query: 429 KLQLKWLRSQMGLVSQEPALFA-TSIKENILFG-----------KEDASMEEVIEAAKAS 476
+ L+ +R+++G+V Q LF ++ +N+ E +ME + A
Sbjct: 79 EKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLAD 138
Query: 477 NAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESER 536
A + Q+SGGQ+QR+AIARA+ P+++L DE TSALD E
Sbjct: 139 KADHM---------------PAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPE--- 180
Query: 537 VVQEALDKAVVGR-------TTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584
+V E L+ V+ R T +++ H + R AD + G+++E G DE+
Sbjct: 181 LVGEVLN--VIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEI 234
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 86.0 bits (213), Expect = 2e-18
Identities = 59/206 (28%), Positives = 110/206 (53%), Gaps = 12/206 (5%)
Query: 385 TIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQ 444
P +A++G +G+GKST+ P G +++ G I K ++ +R +GLV Q
Sbjct: 26 IAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQ 85
Query: 445 EP--ALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLP-QQYDTQVGERGVQMS 501
P +F+ +++++I FG + ++E A + S+A + L ++ +V +S
Sbjct: 86 NPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSA---LHMLGLEELRDRVPH---HLS 139
Query: 502 GGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLS 559
GG+K+R+AIA I P++L+LDE T+ LD + + + + L+ G T I H+L
Sbjct: 140 GGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD 199
Query: 560 TIRN-ADVIAVVQDGQVMETGSHDEL 584
+ AD I V+ G+++ G+ +E+
Sbjct: 200 LVPEMADYIYVMDKGRIVAYGTVEEI 225
|
Length = 277 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 87.8 bits (218), Expect = 3e-18
Identities = 61/219 (27%), Positives = 105/219 (47%), Gaps = 37/219 (16%)
Query: 380 KDFCLTI----PAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDG---VSIDK-LQ 431
+F L PA AL G SGSGK+++I ++ P G I L+G V +K +
Sbjct: 11 GNFALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIF 70
Query: 432 LKWLRSQMGLVSQEPALFA-TSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYD 490
L + ++G V Q+ LF +++ N+ +G + + + + + + P
Sbjct: 71 LPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGT-- 128
Query: 491 TQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALD----SES----ERVVQEAL 542
+SGG+KQR+AI RA++ AP +LL+DE ++LD E ER+ E
Sbjct: 129 ---------LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEI- 178
Query: 543 DKAVVGRTTII-IAHRLSTI-RNADVIAVVQDGQVMETG 579
I+ ++H L + R AD + V+++G+V +G
Sbjct: 179 ------NIPILYVSHSLDEVLRLADRVVVLENGKVKASG 211
|
Length = 352 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 84.1 bits (208), Expect = 3e-18
Identities = 52/167 (31%), Positives = 80/167 (47%), Gaps = 22/167 (13%)
Query: 374 PESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP---LGGEIILDGVSIDKL 430
P S + + TI G+ V L+G SG GKST+++ + A GE+ L+ +D L
Sbjct: 13 PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDML 72
Query: 431 QLKWLRSQMGLVSQEPALFAT-SIKENILFG-----KEDASMEEVIEAAKASNAHNFIRQ 484
+ Q+G++ Q+ LF S+ +N+LF K +A A + S Q
Sbjct: 73 PAA--QRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQ 130
Query: 485 LPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALD 531
P +SGGQ+ R+A+ RA++ P+ LLLDE S LD
Sbjct: 131 DPAT-----------LSGGQRARVALLRALLAQPKALLLDEPFSRLD 166
|
Length = 213 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 85.3 bits (211), Expect = 4e-18
Identities = 63/218 (28%), Positives = 105/218 (48%), Gaps = 22/218 (10%)
Query: 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFY-----APLGGEIILDGVSI--DKL 430
+ K L IP AL+G SG GKST++ R A + GE+ L G +I +
Sbjct: 19 VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDV 78
Query: 431 QLKWLRSQMGLVSQEPALFA-TSIKENILFG-------KEDASMEEVIEAAKASNAHNFI 482
+R ++G+V Q P F +I +N+ G K ++E +E A A
Sbjct: 79 DPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAA---- 134
Query: 483 RQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEAL 542
L + ++ + +SGGQ+QR+ IARA+ P+ILL+DE T+ +D ++E L
Sbjct: 135 --LWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELL 192
Query: 543 DKAVVGRTTIIIAHR-LSTIRNADVIAVVQDGQVMETG 579
+ T +++ H R +D +A + G+++E G
Sbjct: 193 FELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVG 230
|
Length = 253 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 4e-18
Identities = 63/233 (27%), Positives = 102/233 (43%), Gaps = 48/233 (20%)
Query: 373 RPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKL-- 430
+ + L++ +G+TVAL+G SG GKST+ LL +P G + G + KL
Sbjct: 22 HQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNR 81
Query: 431 -QLKWLRSQMGLVSQ-----------------EPALFATSIKENILFGKEDASMEEVIEA 472
Q K R + +V Q EP S+ + + A E++ A
Sbjct: 82 AQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDK----AERLARASEMLRA 137
Query: 473 AKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDS 532
++ + + P Q +SGGQ QR+ +ARA+ P++L+LDEA S LD
Sbjct: 138 VDLDDSV--LDKRPPQ-----------LSGGQLQRVCLARALAVEPKLLILDEAVSNLD- 183
Query: 533 ESERVVQ-EALD-----KAVVGRTTIIIAHRLSTI-RNADVIAVVQDGQVMET 578
V+Q + + G + I H L + R + V+ +GQ++ET
Sbjct: 184 ---LVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVET 233
|
Length = 268 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 89.4 bits (222), Expect = 4e-18
Identities = 69/223 (30%), Positives = 114/223 (51%), Gaps = 12/223 (5%)
Query: 361 VEFKCVQFAYPSRPESI-IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGE 419
+E K ++ +YPS E + + K L I AG+ VA+VG SGSGKST++ +L P G
Sbjct: 5 LELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGT 64
Query: 420 IILDGVSIDKL---QLKWLRSQ-MGLVSQEPALFA-TSIKENILFGKEDASMEEVIEAAK 474
+ G + L L LR + G + Q L + + +N+ A +E +
Sbjct: 65 YRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLER---KQR 121
Query: 475 ASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSES 534
A +++L + +V + Q+SGGQ+QR++IARA++ +++L DE T ALDS S
Sbjct: 122 LLRAQELLQRL--GLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHS 179
Query: 535 ERVVQEALDK-AVVGRTTIIIAHRLSTIRNADVIAVVQDGQVM 576
V L + G T II+ H A+ + ++DG+++
Sbjct: 180 GEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIV 222
|
Length = 648 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 4e-18
Identities = 53/193 (27%), Positives = 93/193 (48%), Gaps = 10/193 (5%)
Query: 375 ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKW 434
E L I G V ++G +G+GKST++ + P G+I++DGV + K
Sbjct: 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKS-VA 76
Query: 435 LRSQM-GLVSQEPAL---FATSIKENILFGKEDASMEEVIEAAKASNAHNF---IRQLPQ 487
R+ + V Q+P +I+EN+ + + A +F + +L
Sbjct: 77 KRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGL 136
Query: 488 QYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVV 547
+ ++ +R +SGGQ+Q +++ A + P+ILLLDE T+ALD ++ V E K V
Sbjct: 137 GLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVE 196
Query: 548 GR--TTIIIAHRL 558
TT+++ H +
Sbjct: 197 EHKLTTLMVTHNM 209
|
Length = 263 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 4e-18
Identities = 52/207 (25%), Positives = 98/207 (47%), Gaps = 16/207 (7%)
Query: 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI 420
+E K V + I D + G+ A+VG +G+GK+T+++LL + P G++
Sbjct: 32 IELKNVSVRRNGKK---ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDV 88
Query: 421 ILDGVSIDKLQLKW-LRSQMGLVS---QEPALFATSIKENILFGKEDASM--EEVIEAAK 474
L G K + + LR ++GLVS E ++++ +L G + +E + A
Sbjct: 89 TLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAED 148
Query: 475 ASNAHNFIRQLPQQYDTQVGERGV-QMSGGQKQRIAIARAIIKAPRILLLDEATSALDSE 533
+ A + L + +R +S G+++R+ IARA++K P +L+LDE LD
Sbjct: 149 LAAAQWLLELL---GAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLI 205
Query: 534 S-ERVVQEALDKAVV--GRTTIIIAHR 557
+ E+++ + A + + H
Sbjct: 206 AREQLLNRLEELAASPGAPALLFVTHH 232
|
Length = 257 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 86.1 bits (213), Expect = 4e-18
Identities = 64/224 (28%), Positives = 112/224 (50%), Gaps = 19/224 (8%)
Query: 375 ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKW 434
+ ++ D TI G+ L+G +G+GKST+ +L +P G+I + G + + +
Sbjct: 16 DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPS-RARL 74
Query: 435 LRSQMGLVSQEPAL-FATSIKENIL-----FGKEDASMEEVIEAAKASNAHNFIRQLPQQ 488
R +G+V Q L +++EN+L FG +E VI + F R L +
Sbjct: 75 ARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLL-----EFAR-LESK 128
Query: 489 YDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVV- 547
D +V +SGG K+R+ +ARA+I P++L+LDE T+ LD + ++ E L +
Sbjct: 129 ADVRVA----LLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLAR 184
Query: 548 GRTTIIIAHRLSTI-RNADVIAVVQDGQVMETGSHDELIQAESG 590
G+T ++ H + R D + V++ G+ + G LI + G
Sbjct: 185 GKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDEQIG 228
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 90.0 bits (223), Expect = 5e-18
Identities = 62/222 (27%), Positives = 113/222 (50%), Gaps = 20/222 (9%)
Query: 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRS 437
+ K+ + G+ +A+ G +GSGKS+++ ++ P G+I G
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG------------- 487
Query: 438 QMGLVSQEPALFATSIKENILFG--KEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGE 495
++ Q + +IK+NI+FG ++ VI KA I P++ T +GE
Sbjct: 488 RISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVI---KACQLEEDIALFPEKDKTVLGE 544
Query: 496 RGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESER-VVQEALDKAVVGRTTIII 554
G+ +SGGQ+ RI++ARA+ K + LLD + LD +E+ + + L K + +T I++
Sbjct: 545 GGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILV 604
Query: 555 AHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLV 596
+L ++ AD I ++ +G G+ EL QA+ ++SL+
Sbjct: 605 TSKLEHLKKADKILLLHEGVCYFYGTFSEL-QAKRPDFSSLL 645
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 83.3 bits (207), Expect = 5e-18
Identities = 61/218 (27%), Positives = 99/218 (45%), Gaps = 43/218 (19%)
Query: 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRF--YAPLGGEIILDGVSIDKLQLKWL 435
I K LTI G+ AL+G +GSGKST+ + Y GEI+ G I L +
Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPE-E 73
Query: 436 RSQMG--LVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQV 493
R+++G L Q P E NA +F+R +
Sbjct: 74 RARLGIFLAFQYP-----------------------PEIPGVKNA-DFLRYV-------- 101
Query: 494 GERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDK-AVVGRTTI 552
SGG+K+R I + ++ P + +LDE S LD ++ R+V E ++K G++ +
Sbjct: 102 ---NEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVL 158
Query: 553 IIAH--RLSTIRNADVIAVVQDGQVMETGSHDELIQAE 588
II H RL D + V+ DG+++++G + ++ E
Sbjct: 159 IITHYQRLLDYIKPDRVHVLYDGRIVKSGDKELALEIE 196
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 84.7 bits (209), Expect = 8e-18
Identities = 61/233 (26%), Positives = 116/233 (49%), Gaps = 29/233 (12%)
Query: 366 VQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGV 425
V ++YP ++ ++ L I G+ + ++G +GSGKST+ L P G++++ G+
Sbjct: 7 VSYSYPDGTPAL--ENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGI 64
Query: 426 SI-DKLQLKWLRSQMGLVSQEP--ALFATSIKENILFGKEDASMEEVIEAAKASNAHNFI 482
D +L+ +R +G+V Q P +++E++ FG E+ + +
Sbjct: 65 DTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPI------------- 111
Query: 483 RQLPQQYDTQVGERGVQ---------MSGGQKQRIAIARAIIKAPRILLLDEATSALDSE 533
++ ++ D + E G++ +SGGQ Q +A+A + P L+ DE TS LD +
Sbjct: 112 -EIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPD 170
Query: 534 SERVVQEALDKA-VVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELI 585
S V E + K G+T + I H L + +AD I V+ G+++ G + ++
Sbjct: 171 SGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVL 223
|
Length = 274 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 9e-18
Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Query: 1003 ELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVK 1062
E++N+ F Y R + S+ ++AG+ ALVG +GSGKST++ I P G++
Sbjct: 1 EIENLSFRYGGRT---ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL 57
Query: 1063 IDDRDIRSYHLRSLRRHIALVSQ 1085
ID +DI L LRR I V Q
Sbjct: 58 IDGKDIAKLPLEELRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 83.8 bits (208), Expect = 9e-18
Identities = 64/223 (28%), Positives = 102/223 (45%), Gaps = 35/223 (15%)
Query: 378 IFKDFCLTIPAGKTVALVGGSGSGKST---VIALLQRFYAPLGGEIILDGVSIDKLQLKW 434
I K LT+ G+ A++G +GSGKST I + Y GEI+ DG I +L
Sbjct: 19 ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPK-YEVTEGEILFDGEDILELSPDE 77
Query: 435 LRSQMG--LVSQEPALFA-TSIKE------NILFGKEDASME---EVIEAAKASNAHNFI 482
R++ G L Q P + + N G E E+ E A+
Sbjct: 78 -RARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLG----- 131
Query: 483 RQLPQQYDTQVGERGVQM--SGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQE 540
D + ER V SGG+K+R I + ++ P++ +LDE S LD ++ ++V E
Sbjct: 132 ------LDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAE 185
Query: 541 ALDK-AVVGRTTIIIAHR---LSTIRNADVIAVVQDGQVMETG 579
++ GR +II H L I+ D + V+ DG+++++G
Sbjct: 186 GINALREEGRGVLIITHYQRLLDYIK-PDKVHVLYDGRIVKSG 227
|
Length = 251 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.0 bits (211), Expect = 1e-17
Identities = 37/100 (37%), Positives = 52/100 (52%), Gaps = 4/100 (4%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
IE +NV Y + + ++ IE G+ L+G SGSGK+T + +I R +P G++
Sbjct: 2 IEFENVSKRYGNKK---AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEI 58
Query: 1062 KIDDRDIRSYHLRSLRRHIALVSQEPTLFAG-TIRENIAY 1100
ID DI LRR I V Q+ LF T+ ENIA
Sbjct: 59 LIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIAT 98
|
Length = 309 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 1e-17
Identities = 52/206 (25%), Positives = 95/206 (46%), Gaps = 15/206 (7%)
Query: 380 KDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439
T+ G+ L+G +G+GK+T + +L P G +DG + K + R ++
Sbjct: 22 DGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAE-ARRRL 80
Query: 440 GLVSQEPALFA-TSIKENIL-FGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQ--VGE 495
G VS L+ + +EN+ F + K + +L + + +
Sbjct: 81 GFVSDSTGLYDRLTARENLEYFAG--------LYGLKGDELTARLEELADRLGMEELLDR 132
Query: 496 RGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIA 555
R S G +Q++AIARA++ P +LLLDE T+ LD + R ++E + + I+ +
Sbjct: 133 RVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFS 192
Query: 556 -HRLSTI-RNADVIAVVQDGQVMETG 579
H + + R D + V+ G+V+ G
Sbjct: 193 THIMQEVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 84.4 bits (208), Expect = 1e-17
Identities = 71/241 (29%), Positives = 115/241 (47%), Gaps = 37/241 (15%)
Query: 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGG-----EIILDGVSI----D 428
+ + PA +L+G +GSGK+T + L R + G +++L G SI D
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 429 KLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQ 488
L+ R ++G++ Q P F SI +N+L G + A K F R + Q
Sbjct: 96 VLEF---RRRVGMLFQRPNPFPMSIMDNVLAG---------VRAHKLVPRKEF-RGVAQA 142
Query: 489 YDTQVG----------ERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVV 538
T+VG + ++SGGQ+Q + +AR + P +LLLDE TSALD + +
Sbjct: 143 RLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKI 202
Query: 539 QEALDKAVVGRTTIIIAHRLS-TIRNADVIAVVQDGQVMETGSHDELI----QAESGLYT 593
+E + T II+ H L+ R +D A+ DG+++E G ++L AE+ Y
Sbjct: 203 EEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSSPKHAETARYV 262
Query: 594 S 594
+
Sbjct: 263 A 263
|
Length = 276 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 2e-17
Identities = 42/105 (40%), Positives = 56/105 (53%), Gaps = 6/105 (5%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
+EL+NV Y + S+ IEAG+ AL+G SGSGKST++ I +P G +
Sbjct: 1 LELKNVSKRYG---QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSI 57
Query: 1062 KIDDRDIRSY--HLRSLRRHIALVSQEPTLFAG-TIRENIAYGAS 1103
ID D+ L LRR I +V Q+ LF T+ ENIA G S
Sbjct: 58 LIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGLS 102
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 83.2 bits (206), Expect = 2e-17
Identities = 63/214 (29%), Positives = 103/214 (48%), Gaps = 38/214 (17%)
Query: 375 ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKW 434
E + L IPAG+ VA+VG SG GKST++ LL P GE+ L G + L
Sbjct: 24 ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGEL-LAGTA----PLAE 78
Query: 435 LRSQMGLVSQEPALFA-TSIKENI---LFGKEDASMEEVIEAAKASNAHNFIRQLPQQYD 490
R L+ Q+ L + +N+ L G+ + + + A ++
Sbjct: 79 AREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLAD------------- 125
Query: 491 TQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSES--------ERVVQEAL 542
+ E +SGGQKQR+A+ARA+I P +LLLDE ALD+ + E + Q+
Sbjct: 126 -RANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQH- 183
Query: 543 DKAVVGRTTIIIAHRLS-TIRNADVIAVVQDGQV 575
G T +++ H +S + AD + ++++G++
Sbjct: 184 -----GFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
Length = 257 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 2e-17
Identities = 48/212 (22%), Positives = 102/212 (48%), Gaps = 30/212 (14%)
Query: 380 KDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439
D ++ G+ L+G +G+GK+T I ++ P GE++ DG +D R+++
Sbjct: 17 DDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAA----RNRI 72
Query: 440 GLVSQEPALF-ATSIKENILF-------GKEDA--SMEEVIEAAKASNAHNFIRQLPQQY 489
G + +E L+ + + +++ KE+A ++E +E + S N
Sbjct: 73 GYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYAN--------- 123
Query: 490 DTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEAL-DKAVVG 548
+R ++S G +Q++ A+I P +L+LDE S LD + ++++ + + A G
Sbjct: 124 -----KRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAG 178
Query: 549 RTTIIIAHRLSTI-RNADVIAVVQDGQVMETG 579
+T I+ H++ + D + ++ G+ + G
Sbjct: 179 KTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 84.5 bits (209), Expect = 3e-17
Identities = 64/238 (26%), Positives = 119/238 (50%), Gaps = 22/238 (9%)
Query: 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI 420
++ V +Y + + T+ +G+ L+G +G+GKST+ ++ +P G+I
Sbjct: 42 IDLAGVSKSYGDKA---VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKI 98
Query: 421 ILDGVSIDKLQLKWLRSQMGLVSQEPAL-FATSIKENIL-----FGKEDASMEEVIEAAK 474
+ GV + + + R+++G+V Q L +++EN+L FG +E VI
Sbjct: 99 TVLGVPVPA-RARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVI---- 153
Query: 475 ASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSES 534
+ F R L + D +V + +SGG K+R+ +ARA+I P++L+LDE T+ LD +
Sbjct: 154 -PSLLEFAR-LESKADARVSD----LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHA 207
Query: 535 ERVVQEALDKAVV-GRTTIIIAHRLSTI-RNADVIAVVQDGQVMETGSHDELIQAESG 590
++ E L + G+T ++ H + R D + V++ G+ + G LI G
Sbjct: 208 RHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDEHIG 265
|
Length = 340 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 82.4 bits (203), Expect = 3e-17
Identities = 68/234 (29%), Positives = 107/234 (45%), Gaps = 40/234 (17%)
Query: 380 KDFCLTIPAGKTVALVGGSGSGKSTVIALLQRF------------YAPLGGEIILDGVSI 427
+D + I + +G SG GKSTV+ L R LG ++ G +
Sbjct: 25 RDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVY--GKGV 82
Query: 428 DKLQLKWLRSQMGLVSQEPALFATSIKENILFG------KEDASMEEVIEAAKASNAHNF 481
D + + R +G+V Q+P F+ SI +N+ FG K D + V A + +
Sbjct: 83 DPVVV---RRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLG-DRVKHALQGA----- 133
Query: 482 IRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEA 541
L + ++ G+ +SGGQ+QR+ IARAI P +LLLDE SALD + R V+E
Sbjct: 134 --ALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEEL 191
Query: 542 LDKAVVGRTTIIIAHRL-STIRNADVIAVV--------QDGQVMETGSHDELIQ 586
+ + T ++ H + IR AD A + G ++E G ++ Q
Sbjct: 192 MVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIFQ 245
|
Length = 261 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 4e-17
Identities = 37/99 (37%), Positives = 52/99 (52%), Gaps = 3/99 (3%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
IE +NV Y + +++I G+ L+G SGSGK+T + +I R +P G++
Sbjct: 1 IEFENVTKRYGGGKKAV--NNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEI 58
Query: 1062 KIDDRDIRSYHLRSLRRHIALVSQEPTLFAG-TIRENIA 1099
ID DIR LRR I V Q+ LF T+ ENIA
Sbjct: 59 FIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIA 97
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 82.2 bits (203), Expect = 4e-17
Identities = 54/216 (25%), Positives = 98/216 (45%), Gaps = 26/216 (12%)
Query: 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRS 437
I +T P G L+G +GSGKST++ LL P G + L GV + L +
Sbjct: 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARAR 75
Query: 438 QMGLVSQE-PALFATSIKENILFGK---------EDASMEEVIEA--AKASNAHNFIRQL 485
++ LV Q+ ++++ + G+ + V++ A+ +H R +
Sbjct: 76 RVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM 135
Query: 486 PQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKA 545
+SGG++QR+ +ARA+ + P++LLLDE T+ LD ++ + +
Sbjct: 136 ST------------LSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVREL 183
Query: 546 VVGRTTIIIA-HRLS-TIRNADVIAVVQDGQVMETG 579
T++ A H L+ D + V+ G+V+ G
Sbjct: 184 AATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAG 219
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 82.1 bits (204), Expect = 4e-17
Identities = 62/232 (26%), Positives = 109/232 (46%), Gaps = 37/232 (15%)
Query: 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRS 437
+ D LT+ G+ VA++G +G+GKST++ L +P GE+ L+G + +
Sbjct: 17 LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWS-PAELA 75
Query: 438 QM-GLVSQEPAL-FATSIKENILFG---------KEDASMEEVIEAAKASN-AHNFIRQL 485
+ ++ Q +L F +++E + G ++DA + + ++ A QL
Sbjct: 76 RRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQL 135
Query: 486 PQQYDTQVGERGVQMSGGQKQRIAIARAII------KAPRILLLDEATSALD-SESERVV 538
SGG++QR+ +AR + PR LLLDE TSALD + V+
Sbjct: 136 ---------------SGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVL 180
Query: 539 QEALDKAVV-GRTTIIIAHRLS-TIRNADVIAVVQDGQVMETGSHDELIQAE 588
+ A A G I++ H L+ R AD I ++ G+++ G+ E++ E
Sbjct: 181 RLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLTPE 232
|
Length = 258 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.6 bits (212), Expect = 4e-17
Identities = 115/493 (23%), Positives = 197/493 (39%), Gaps = 57/493 (11%)
Query: 105 TRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFV 164
T G+ ++R+ ++K +L + + +A ++ +++D I A S +LP V
Sbjct: 73 TTLGQHFIYKLRSEFIKKILDTPLERIER--LGSARLLAGLTSDVRNISFAFS-RLPELV 129
Query: 165 MNASLFFGCYLVAFLMLWRLAIVGFPFVVLLVIPGLMYGRTLMSL-------ARKMRDE- 216
L G A+L L+ F V+ ++ + G LM+ AR+ D+
Sbjct: 130 QAIILTLGS--AAYL--AYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKL 185
Query: 217 YNKAGTIAEQA----ISSIRTVYAFVGE-SKTINEFS-SALQGSVQLGLKQGLAKGLAIG 270
N TI E ++ R Y E+ ++ + L + + +G
Sbjct: 186 QNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLG 245
Query: 271 SNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAG-LPNLKYFSEAMA 329
G+ F W L + + L G LP L A
Sbjct: 246 LIGLVF--WLALSLG------WASTNVAATIVLVLLFLRTPLLSAVGILPTL---LTAQV 294
Query: 330 AGERIMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAG 389
A +I ++ K D + +E + V+FAY + LTI G
Sbjct: 295 AFNKIAKLELAPYKADFPR-PQAFPD--WKTLELRNVRFAYQ--DNAFHVGPINLTIKRG 349
Query: 390 KTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALF 449
+ V L+GG+GSGKST+ LL Y P GEI+LDG + QL+ R V + LF
Sbjct: 350 ELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLF 409
Query: 450 ATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGV---QMSGGQKQ 506
L G E + ++IE ++++L + T + + ++S GQK+
Sbjct: 410 DQ------LLGPEGKASPQLIEK--------WLQRLELAHKTSLNDGRFSNLKLSTGQKK 455
Query: 507 RIAIARAIIKAPRILLLDEATSALDSESERVVQEAL--DKAVVGRTTIIIAHRLSTIRNA 564
R+A+ A+++ IL+LDE + D R + L G+T I+H +A
Sbjct: 456 RLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHA 515
Query: 565 DVIAVVQDGQVME 577
D + +++GQ+ E
Sbjct: 516 DRLLEMRNGQLSE 528
|
Length = 546 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 83.2 bits (206), Expect = 4e-17
Identities = 49/205 (23%), Positives = 97/205 (47%), Gaps = 11/205 (5%)
Query: 384 LTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVS 443
+ G+ +G +G+GK+T I +L P G + G + + + + +R +G+V
Sbjct: 14 FKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVP 72
Query: 444 QEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYD-TQVGERGV-QMS 501
Q ++ + L G+E+ M + A +L + ++ + +R V S
Sbjct: 73 QYASV------DEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYS 126
Query: 502 GGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLST 560
GG ++R+ IA ++I P +L LDE T+ LD + R + + + G T ++ H +
Sbjct: 127 GGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEE 186
Query: 561 IRN-ADVIAVVQDGQVMETGSHDEL 584
D IA++ G+++ G+ +EL
Sbjct: 187 ADKLCDRIAIIDHGRIIAEGTPEEL 211
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 81.3 bits (201), Expect = 4e-17
Identities = 64/220 (29%), Positives = 96/220 (43%), Gaps = 51/220 (23%)
Query: 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI-------ILDGVSIDKL 430
+ K+ LT+ AG+ VAL G SG+GKST++ L Y P G I +D
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPR 82
Query: 431 QLKWLRSQ-MGLVSQ-------EPALFATSIKENILFGKEDASMEEVIE-----AAKASN 477
++ +R + +G VSQ AL + E ++E A +
Sbjct: 83 EVLEVRRKTIGYVSQFLRVIPRVSAL--------------EVVAEPLLERGVPREAARAR 128
Query: 478 AHNFIRQLPQQYDTQVGERGVQM-----SGGQKQRIAIARAIIKAPRILLLDEATSALDS 532
A + +L + ER + SGG++QR+ IAR I ILLLDE T++LD+
Sbjct: 129 ARELLARL------NIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDA 182
Query: 533 ESERVVQEALDKAVVGRTTII-IAH-----RLSTIRNADV 566
+ +VV E + +A +I I H L R DV
Sbjct: 183 ANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 5e-17
Identities = 41/121 (33%), Positives = 62/121 (51%), Gaps = 6/121 (4%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
IE +N+ F YP + S++IE G+ L+G +GSGKST++ L+ P G+V
Sbjct: 4 IEAENLSFRYP--GRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV 61
Query: 1062 KIDDRDIRSYH-LRSLRRHIALVSQEPT--LFAGTIRENIAYGASDE-IDESEIVEAAKA 1117
+D D S L LR+ + LV Q P LF T+ + +A+G + + EI E
Sbjct: 62 LVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAE 121
Query: 1118 A 1118
A
Sbjct: 122 A 122
|
Length = 235 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 83.0 bits (205), Expect = 5e-17
Identities = 62/234 (26%), Positives = 107/234 (45%), Gaps = 52/234 (22%)
Query: 381 DFCLTIPAGKTVALVGGSGSGKSTVI----ALLQRFYAPL-------GGEIILDGVSIDK 429
+ T K ++G SGSGKST++ L++ Y + G + + +
Sbjct: 44 NISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNP 103
Query: 430 LQ-----LKWLRSQMGLVSQEP--ALFATSIKENILFG-------KEDASMEEVIEAAKA 475
K LR ++ +V Q P LF +I+++I+FG K +A
Sbjct: 104 YSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEA----------- 152
Query: 476 SNAHNFIRQLPQQYDTQVG------ERG-VQMSGGQKQRIAIARAIIKAPRILLLDEATS 528
++L + Y ++G ER +SGGQK+R+AIA + P IL+ DE T+
Sbjct: 153 -------KKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTA 205
Query: 529 ALDSESER-VVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGS 580
LD + E ++Q LD +T +I H + + AD + V+ G++++TG+
Sbjct: 206 GLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGT 259
|
Length = 320 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 82.9 bits (205), Expect = 6e-17
Identities = 65/245 (26%), Positives = 123/245 (50%), Gaps = 36/245 (14%)
Query: 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI 420
++F+ V+ Y + ++ + G+ L+G +G+GK+T + +L P G I
Sbjct: 8 IDFRNVEKRYG---DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSI 64
Query: 421 ILDGVSIDKLQLKWLRSQMGLVSQ----EPALFATSIKENIL-----FGKEDASMEEVI- 470
L G + + + R ++G+V Q +P +++EN+L FG A+ ++
Sbjct: 65 SLCGEPVPS-RARHARQRVGVVPQFDNLDPDF---TVRENLLVFGRYFGLSAAAARALVP 120
Query: 471 ---EAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEAT 527
E AK L + D +VGE +SGG K+R+ +ARA++ P +L+LDE T
Sbjct: 121 PLLEFAK----------LENKADAKVGE----LSGGMKRRLTLARALVNDPDVLVLDEPT 166
Query: 528 SALDSESERVVQEALDKAVV-GRTTIIIAHRLSTI-RNADVIAVVQDGQVMETGSHDELI 585
+ LD ++ ++ E L + G+T ++ H + R D + V+++G+ + G+ LI
Sbjct: 167 TGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALI 226
Query: 586 QAESG 590
++E G
Sbjct: 227 ESEIG 231
|
Length = 306 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 80.6 bits (200), Expect = 8e-17
Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 7/103 (6%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
IEL+ + ++ R + +G + + G+ A++G SGSGKST++ LI P G+V
Sbjct: 1 IELRGLTKSFGGRT---VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEV 57
Query: 1062 KIDDRDIRS---YHLRSLRRHIALVSQEPTLFAG-TIRENIAY 1100
ID DI L LRR + ++ Q LF T+ EN+A+
Sbjct: 58 LIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAF 100
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 80.5 bits (199), Expect = 8e-17
Identities = 50/210 (23%), Positives = 102/210 (48%), Gaps = 12/210 (5%)
Query: 380 KDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439
+ + G+ L+G +G+GK+T I +L P G + G + + + + +R ++
Sbjct: 17 RGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR-EPREVRRRI 75
Query: 440 GLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYD-TQVGERGV 498
G+V Q+ ++ ++ L G E+ + + + I +L + +R V
Sbjct: 76 GIVFQDLSV------DDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLV 129
Query: 499 Q-MSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDK--AVVGRTTIIIA 555
+ SGG ++R+ IAR+++ P +L LDE T LD ++ V E ++K G T ++
Sbjct: 130 KTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTT 189
Query: 556 HRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584
H + D +A++ G+++ G+ +EL
Sbjct: 190 HYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 79.0 bits (196), Expect = 1e-16
Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Query: 1003 ELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVK 1062
E++N+ Y R + + S+ IEAG+ ++G +G+GKST++ + P G++
Sbjct: 1 EVENLSVGYGGRT---VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEIL 57
Query: 1063 IDDRDIRSYHLRSLRRHIALVSQ 1085
+D +D+ S + L R IA V Q
Sbjct: 58 LDGKDLASLSPKELARKIAYVPQ 80
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 1e-16
Identities = 67/221 (30%), Positives = 112/221 (50%), Gaps = 29/221 (13%)
Query: 384 LTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLG---GEIILDGVSIDKLQLKWLR--SQ 438
L + AG+ V+L G +G+GKST++ +L Y P G GEII +G ++LQ +R +
Sbjct: 26 LKVRAGEIVSLCGENGAGKSTLMKVLSGVY-PHGTYEGEIIFEG---EELQASNIRDTER 81
Query: 439 MGLV--SQEPALFAT-SIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGE 495
G+ QE AL S+ ENI G E + A A + QL + D
Sbjct: 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQL--KLDINPAT 139
Query: 496 RGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESE-----RVVQEALDKAVVGRT 550
+ GQ+Q + IA+A+ K R+L+LDE T++L +ESE ++++ +
Sbjct: 140 PVGNLGLGQQQLVEIAKALNKQARLLILDEPTASL-TESETAVLLDIIRDLKAHGI---A 195
Query: 551 TIIIAHRLSTIRN-ADVIAVVQDGQ-----VMETGSHDELI 585
I I+H+L+ ++ +D I V++DG+ + D++I
Sbjct: 196 CIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMTEDDII 236
|
Length = 506 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 81.7 bits (201), Expect = 1e-16
Identities = 63/238 (26%), Positives = 127/238 (53%), Gaps = 18/238 (7%)
Query: 361 VEFKCVQFAY-PSRP-ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGG 418
++F+ V + Y P+ P S D L + G AL+G +GSGKST++ L P G
Sbjct: 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEG 61
Query: 419 -----EIILDGVSIDKLQLKWLRSQMGLVSQEP--ALFATSIKENILFGKEDASMEEVIE 471
+I++ S K ++K +R ++G+V Q P LF ++ +++ FG ++ + + +
Sbjct: 62 KVTVGDIVVSSTSKQK-EIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKE-K 119
Query: 472 AAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALD 531
A K + + L ++ + ++SGGQ +R+AIA + P +L+LDE T+ LD
Sbjct: 120 AEKIAAEKLEMVGLADEFWEK---SPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLD 176
Query: 532 SESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586
++ R+ L +++ G+T +++ H + + + AD + +++ G ++ G+ ++ Q
Sbjct: 177 PKA-RIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQ 233
|
Length = 288 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 84.1 bits (208), Expect = 1e-16
Identities = 73/231 (31%), Positives = 113/231 (48%), Gaps = 26/231 (11%)
Query: 378 IFKDF---------CLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLG---GEIILDGV 425
I K F L + G+ V L G +G+GKST++ +L Y P G GEI G
Sbjct: 7 IVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVY-PHGTWDGEIYWSGS 65
Query: 426 SIDKLQLKWL-RSQMGLVSQEPALFAT-SIKENILFGKEDASMEEVIE-AAKASNAHNFI 482
+ ++ R+ + ++ QE L S+ ENI G E + A A N +
Sbjct: 66 PLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLL 125
Query: 483 RQLPQQYDTQVGERGV-QMSGGQKQRIAIARAIIKAPRILLLDEATSAL-DSESERVVQE 540
R+L Q D R V GGQ+Q + IA+A+ K R+L+LDE +S+L + E+E ++
Sbjct: 126 REL--QLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDI 183
Query: 541 ALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQ-----VMETGSHDELI 585
D G + I+H+L+ ++ D I V++DGQ M T S D++I
Sbjct: 184 IRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTMSEDDII 234
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 1e-16
Identities = 60/166 (36%), Positives = 87/166 (52%), Gaps = 22/166 (13%)
Query: 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPL----GGEIILDGVSIDKLQLK 433
+ D L IP+G+ VAL+G SGSGK+T L R A L G I G + +L +
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTT----LLRIIAGLEHQTSGHIRFHGTDVSRLHAR 72
Query: 434 WLRSQMGLVSQEPALFA-TSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYD-- 490
++G V Q ALF ++ +NI FG V+ + NA ++ Q +
Sbjct: 73 --DRKVGFVFQHYALFRHMTVFDNIAFGL------TVLPRRERPNAAAIKAKVTQLLEMV 124
Query: 491 --TQVGER-GVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSE 533
+ +R Q+SGGQKQR+A+ARA+ P+ILLLDE ALD++
Sbjct: 125 QLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQ 170
|
Length = 353 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.8 bits (199), Expect = 1e-16
Identities = 72/230 (31%), Positives = 103/230 (44%), Gaps = 28/230 (12%)
Query: 368 FAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSI 427
F Y P + K L LVG +G GKST+ L P G ++ G +
Sbjct: 9 FRYQDEP---VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPL 65
Query: 428 D--KLQLKWLRSQMGLVSQEP--ALFATSIKENILFG------KEDASMEEVIEAAKASN 477
D K L LR Q+ V Q+P +F T I +I F E V EA +
Sbjct: 66 DYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVD 125
Query: 478 AHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERV 537
A +F R P Q +S GQK+R+AIA A++ R LLLDE T+ LD R
Sbjct: 126 AQHF-RHQPIQC----------LSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAG-RT 173
Query: 538 VQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584
A+ + +V G II +H + I +D + V++ GQ++ G+ E+
Sbjct: 174 QMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEV 223
|
Length = 271 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 79.1 bits (196), Expect = 2e-16
Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 8/120 (6%)
Query: 1002 IELQNVHFAYP-ARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGD 1060
+E++NV Y V E S+ +E G+ ALVG SG GKST++ +I P G+
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 1061 VKIDDRDIRSYHLRSLRRHIALVSQEPTLFA-GTIRENIAYGAS-DEIDESEIVEAAKAA 1118
V +D + V Q+ L T+ +N+A G + ++E E A+
Sbjct: 61 VLVDGEPV-----TGPGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEEL 115
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 81.2 bits (200), Expect = 2e-16
Identities = 70/212 (33%), Positives = 109/212 (51%), Gaps = 16/212 (7%)
Query: 384 LTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSI----DKL-QLKWLRSQ 438
LT K ++G +GSGKST+I L G+ I+ +I K+ ++K LR +
Sbjct: 32 LTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKE 91
Query: 439 MGLVSQEP--ALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGER 496
+GLV Q P LF +I+++I FG + E EA K + QLP+ Y V
Sbjct: 92 IGLVFQFPEYQLFQETIEKDIAFGPVNLG-ENKQEAYKKVPELLKLVQLPEDY---VKRS 147
Query: 497 GVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESER---VVQEALDKAVVGRTTII 553
++SGGQK+R+A+A I L+LDE T LD + E + E L+K + I+
Sbjct: 148 PFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKE-YKKRIIM 206
Query: 554 IAHRLSTI-RNADVIAVVQDGQVMETGSHDEL 584
+ H + + R AD + V+ +G+V+ GS E+
Sbjct: 207 VTHNMDQVLRIADEVIVMHEGKVISIGSPFEI 238
|
Length = 289 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 80.6 bits (199), Expect = 2e-16
Identities = 64/238 (26%), Positives = 117/238 (49%), Gaps = 28/238 (11%)
Query: 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI 420
V+ + V F +R IF + LT+P GK A++G SG GK+T++ L+ AP GEI
Sbjct: 8 VDMRGVSF---TRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEI 64
Query: 421 ILDGVSIDKL---QLKWLRSQMGLVSQEPALFA-TSIKENILFG-KEDASMEEVIEAAKA 475
+ DG +I + +L +R +M ++ Q ALF ++ +N+ + +E + +
Sbjct: 65 LFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPL----- 119
Query: 476 SNAHNFIRQLPQQYDTQVGERGV------QMSGGQKQRIAIARAIIKAPRILLLDEATSA 529
+ VG RG ++SGG +R A+ARAI P +++ DE
Sbjct: 120 ------LHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVG 173
Query: 530 LDSESERVVQEALDK--AVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584
D + V+ + + + + +G T ++++H + + + AD +V D +++ GS L
Sbjct: 174 QDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQAL 231
|
Length = 269 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 79.5 bits (197), Expect = 2e-16
Identities = 60/232 (25%), Positives = 111/232 (47%), Gaps = 43/232 (18%)
Query: 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRS 437
+ L++ G+ V L+G +G+GK+T ++ P G+I+LDG I KL + R+
Sbjct: 15 VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMH-KRA 73
Query: 438 QMGL--VSQEPALFAT-SIKENIL-----FGKEDASMEEVIEAAKASNAHNF-IRQLPQQ 488
++G+ + QE ++F +++ENIL G EE +E F I L +
Sbjct: 74 RLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEEL----LEEFHITHLRKS 129
Query: 489 YDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALD----SESERVVQEALDK 544
+SGG+++R+ IARA+ P+ LLLDE + +D + +++++ D+
Sbjct: 130 K-------ASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDR 182
Query: 545 AVVG--------RTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAE 588
+G R T+ I R ++ +G+V+ G+ +E+ E
Sbjct: 183 G-IGVLITDHNVRETLSITDR---------AYIIYEGKVLAEGTPEEIAANE 224
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.1 bits (197), Expect = 2e-16
Identities = 62/247 (25%), Positives = 121/247 (48%), Gaps = 34/247 (13%)
Query: 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI 420
++ + F Y ++ I + + I K A++G SG GKST + L R L E+
Sbjct: 8 IKVNNLSFYYDTQK---ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRM-NELESEV 63
Query: 421 ILDG--------VSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFG------KEDASM 466
++G + ++ L LR Q+ +V +P LF S+ +N+ +G + +
Sbjct: 64 RVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEI 123
Query: 467 EEVIEAA-KASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDE 525
++++E+A K ++ + I+ ++ + + +SGGQ+QR+ IARA+ P++LL+DE
Sbjct: 124 DDIVESALKDADLWDEIKH-------KIHKSALDLSGGQQQRLCIARALAVKPKVLLMDE 176
Query: 526 ATSALDSESERVVQEALDKAVVGR--TTIIIAHRLSTI-RNADVIAVVQD-----GQVME 577
LD + V+ + + T +I++H L + R +D A + GQ++E
Sbjct: 177 PCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVE 236
Query: 578 TGSHDEL 584
G ++
Sbjct: 237 FGLTKKI 243
|
Length = 261 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 78.3 bits (194), Expect = 4e-16
Identities = 36/101 (35%), Positives = 56/101 (55%), Gaps = 6/101 (5%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
+EL+ + Y V + S+ +E G+ AL+G SG GK+T++ LI P G++
Sbjct: 1 LELKGLSKTYG---SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEI 57
Query: 1062 KIDDRDIRSYHLRSLRRHIALVSQEPTLFAG-TIRENIAYG 1101
ID RD+ + RR+I +V Q+ LF T+ ENIA+G
Sbjct: 58 LIDGRDV--TGVPPERRNIGMVFQDYALFPHLTVAENIAFG 96
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 4e-16
Identities = 67/237 (28%), Positives = 111/237 (46%), Gaps = 26/237 (10%)
Query: 379 FKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIIL---DGVSIDKLQL--- 432
+D + G+ + +VG SGSGKST++ L AP G G ++ QL
Sbjct: 19 CRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEA 78
Query: 433 ---KWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQY 489
+ +R++ G V Q P ++ + G A++ E + A A + N IR Q +
Sbjct: 79 ERRRLMRTEWGFVHQNPR---DGLRMRVSAG---ANIGERLMAIGARHYGN-IRATAQDW 131
Query: 490 -------DTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEAL 542
T++ + SGG +QR+ IAR ++ PR++ +DE T LD + + + L
Sbjct: 132 LEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLL 191
Query: 543 DKAVV--GRTTIIIAHRLSTIR-NADVIAVVQDGQVMETGSHDELIQAESGLYTSLV 596
V G II+ H L R A + V+Q G+V+E+G D+++ YT L+
Sbjct: 192 RGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLDDPQHPYTQLL 248
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 4e-16
Identities = 60/220 (27%), Positives = 104/220 (47%), Gaps = 38/220 (17%)
Query: 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRS 437
+ LT+P L+G +G+GKST++ ++ P GEII DG W R
Sbjct: 15 AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDG-------HPWTRK 67
Query: 438 QM---GLVSQEPALFAT-SIKENI-----LFGKEDASMEEVIEAAKASNAHNFIRQLPQQ 488
+ G + + P L+ + +EN+ L G D+ ++EV+ +N
Sbjct: 68 DLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTN----------- 116
Query: 489 YDTQVGERGV-QMSGGQKQRIAIARAIIKAPRILLLDEATSALDS---ESERVVQEALDK 544
G++ Q S G KQR+ IA A++ P++L+LDE T+ LD + R + + +
Sbjct: 117 ----TGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPE 172
Query: 545 AVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDE 583
G T I+ +H LS ++ AD I ++ +G + G ++
Sbjct: 173 Q--GITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 5e-16
Identities = 41/122 (33%), Positives = 65/122 (53%), Gaps = 13/122 (10%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
+EL+NV ++ + + ++ IE G+ L+G SG GKST++ +I +P G++
Sbjct: 4 LELKNVRKSFG---SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEI 60
Query: 1062 KIDDRDIRSYHLRSLRRHIALVSQEPTLF-AGTIRENIAYG------ASDEIDESEIVEA 1114
ID RD+ L +R IA+V Q L+ T+ ENIA+G EID+ + E
Sbjct: 61 LIDGRDVT--DLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDK-RVKEV 117
Query: 1115 AK 1116
AK
Sbjct: 118 AK 119
|
Length = 338 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 79.6 bits (196), Expect = 5e-16
Identities = 59/209 (28%), Positives = 104/209 (49%), Gaps = 26/209 (12%)
Query: 393 ALVGGSGSGKSTVIALLQRFYAPL-----GGEIILDGVSI-----DKLQLKWLRSQMGLV 442
A++G SG GKST + + R + G ++ DG I D++ L R ++G+V
Sbjct: 69 AIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLL---RKKIGMV 125
Query: 443 SQEPALFATSIKENILFG------KEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGER 496
Q+P F SI +NI +G + +EE++E + A L + ++ +
Sbjct: 126 FQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAA------LWDEVSDRLDKN 179
Query: 497 GVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAH 556
+ +SGGQ+QR+ +AR + P ILLLDE TSALD ++ +++ + + T +I+ H
Sbjct: 180 ALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTH 239
Query: 557 RLSTI-RNADVIAVVQDGQVMETGSHDEL 584
+ R +D +G ++E +L
Sbjct: 240 NMQQASRVSDYTMFFYEGVLVEHAPTAQL 268
|
Length = 286 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 7e-16
Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 13/139 (9%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
IE++N+ Y D +G S ++E G+ L+G +G+GK+T++ ++ P G++
Sbjct: 5 IEVRNLTKKY--GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI 62
Query: 1062 KIDDRDIRSYHLRSLRRHIALVSQEPTLFAG-TIRENI-----AYGASDEIDESEIVEAA 1115
+ D+ +RR I V QEP+L+ T+REN+ YG S E E I E
Sbjct: 63 LVLGYDVVKEP-AKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELL 121
Query: 1116 KAAN----AHDFIAGLNEG 1130
+ A+ + L+ G
Sbjct: 122 ELFGLEDKANKKVRTLSGG 140
|
Length = 293 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 9e-16
Identities = 56/208 (26%), Positives = 106/208 (50%), Gaps = 18/208 (8%)
Query: 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKW--- 434
+ + +I G+ +A+VG SGSGKST++ LL P G++I +G + KL
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83
Query: 435 LRSQ-MGLVSQEPALFA--TSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQ--Y 489
LR+Q +G + Q L T++ E+ +M +I K + ++ ++
Sbjct: 84 LRNQKLGFIYQFHHLLPDFTAL--------ENVAMPLLIGKKKPAEINSRALEMLAAVGL 135
Query: 490 DTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGR 549
+ + R ++SGG++QR+AIARA++ PR++L DE T LD+ + + + L + +
Sbjct: 136 EHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQ 195
Query: 550 TT--IIIAHRLSTIRNADVIAVVQDGQV 575
T +++ H L + ++DG++
Sbjct: 196 GTAFLVVTHDLQLAKRMSRQLEMRDGRL 223
|
Length = 233 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 81.4 bits (201), Expect = 1e-15
Identities = 71/212 (33%), Positives = 111/212 (52%), Gaps = 36/212 (16%)
Query: 389 GKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKL---QLKWLRSQMGLVSQE 445
G+T++LVG SGSGKST L R GGEII +G ID L +L+ LR + + Q+
Sbjct: 350 GETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQD 409
Query: 446 PALFAT---------SIKE-----NILFGKEDAS-MEEVIEAAKASNAHNFIRQLPQQYD 490
P +A+ SI E +L GK A+ + ++E H + + P ++
Sbjct: 410 P--YASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAW--RYPHEF- 464
Query: 491 TQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALD-SESERVVQEALD-KAVVG 548
SGGQ+QRI IARA+ P++++ DEA SALD S +++ LD + G
Sbjct: 465 ----------SGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFG 514
Query: 549 RTTIIIAHRLSTI-RNADVIAVVQDGQVMETG 579
+ I+H ++ + R + +AV+ GQ++E G
Sbjct: 515 IAYLFISHDMAVVERISHRVAVMYLGQIVEIG 546
|
Length = 623 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 1e-15
Identities = 55/217 (25%), Positives = 113/217 (52%), Gaps = 11/217 (5%)
Query: 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRS 437
+ D L IP G +++G +G+GKST+++++ R GEI +DG+ + K L
Sbjct: 16 VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAK 75
Query: 438 QMGLVSQEPALFAT-SIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYD-TQVGE 495
++ ++ QE + + ++++ + FG+ S + I + + + +
Sbjct: 76 KLSILKQENHINSRLTVRDLVGFGRFPYS-----QGRLTKEDRRIINEAIEYLHLEDLSD 130
Query: 496 RGV-QMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTI 552
R + ++SGGQ+QR IA + + +LLDE + LD + + + L + +G+T +
Sbjct: 131 RYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIV 190
Query: 553 IIAHRLS-TIRNADVIAVVQDGQVMETGSHDELIQAE 588
++ H ++ +D I +++G+V++ GS DE+IQ E
Sbjct: 191 VVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQPE 227
|
Length = 252 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 79.0 bits (195), Expect = 1e-15
Identities = 66/229 (28%), Positives = 108/229 (47%), Gaps = 31/229 (13%)
Query: 384 LTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKL---QLKWLRSQMG 440
L + G+T+ +VG SG GKST + GE+ G + + + + +RS +
Sbjct: 42 LRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQ 101
Query: 441 LVSQEP-------ALFATSIKENILFGKEDASMEEVIEAAKASNAH-----NFIRQLPQQ 488
++ Q+P I E + S +EV + KA N I + P +
Sbjct: 102 MIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHE 161
Query: 489 YDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALD-SESERVVQ--EALDKA 545
+ SGGQ QRI IARA+I P++++ DE SALD S +VV + L +
Sbjct: 162 F-----------SGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQRE 210
Query: 546 VVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQAESGLYT 593
+G + I IAH L+ +++ +D + V+ G +E G++DE+ YT
Sbjct: 211 -MGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNPLHPYT 258
|
Length = 331 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 77.1 bits (190), Expect = 1e-15
Identities = 58/186 (31%), Positives = 97/186 (52%), Gaps = 23/186 (12%)
Query: 380 KDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439
K LTI G+ ++L+G SG GKST++ L+ P G +IL+G I + +M
Sbjct: 2 KGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPG----PDRM 57
Query: 440 GLVSQEPALFA-TSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVG---- 494
+V Q +L +++ENI D + ++ ++ + R + +++ VG
Sbjct: 58 -VVFQNYSLLPWLTVRENIALAV-DRVLPDLSKSER--------RAIVEEHIALVGLTEA 107
Query: 495 --ERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRT 550
+R Q+SGG KQR+AIARA+ P++LLLDE ALD+ + +QE L + T
Sbjct: 108 ADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVT 167
Query: 551 TIIIAH 556
+++ H
Sbjct: 168 VLMVTH 173
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 1e-15
Identities = 53/198 (26%), Positives = 87/198 (43%), Gaps = 47/198 (23%)
Query: 366 VQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGV 425
+ AY RP + ++ LT+ G+ + LVG +G+GKST++ +L P GE+
Sbjct: 9 LSLAYGDRP---LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG 65
Query: 426 SIDKLQLKWLRSQMGLVSQEPALFAT-SIKENILFG-KEDASMEEVIEAAKASNAHNFIR 483
++G +SQEP L ++ + ++ G E + +E A A A
Sbjct: 66 L-----------RVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDE 114
Query: 484 QLPQ---------------------------QYDTQVGERGVQMSGGQKQRIAIARAIIK 516
L + D V +SGG ++R+A+ARA+++
Sbjct: 115 LLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSS----LSGGWRRRVALARALLE 170
Query: 517 APRILLLDEATSALDSES 534
P +LLLDE T+ LD ES
Sbjct: 171 EPDLLLLDEPTNHLDLES 188
|
Length = 530 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 2e-15
Identities = 51/178 (28%), Positives = 84/178 (47%), Gaps = 25/178 (14%)
Query: 372 SRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQ 431
R +F T+ AG+ + + G +GSGK+T++ +L PL G ++L+G +D +
Sbjct: 9 ERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR 68
Query: 432 LKWLRSQMGLVSQEPALFAT-SIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYD 490
R + + P + T S+ EN+ F D S E+V EA
Sbjct: 69 DSIARG-LLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEAL----------------- 110
Query: 491 TQVGERGV------QMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEAL 542
+VG G Q+S GQ++R+A+AR ++ + +LDE T+ALD EA+
Sbjct: 111 ARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAM 168
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 2e-15
Identities = 62/238 (26%), Positives = 113/238 (47%), Gaps = 40/238 (16%)
Query: 370 YPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDK 429
Y R + D L + +G+ V L+G +G+GK+T ++ P G+I+LD I K
Sbjct: 14 YKKRK---VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITK 70
Query: 430 LQLKWLRSQMGL--VSQEPALF-ATSIKENIL----FGKEDASMEEVIEAAKASNAHNFI 482
L + R+++G+ + QE ++F ++++NI+ ++D E E A I
Sbjct: 71 LPM-HKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHI 129
Query: 483 RQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALD----SESERVV 538
L + +SGG+++R+ IARA+ P+ +LLDE + +D + +R++
Sbjct: 130 THLRDS-------KAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRII 182
Query: 539 QEALDKAVVG--------RTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAE 588
+ D+ +G R T+ I R I DG+V+ GS +E++ E
Sbjct: 183 KHLKDRG-IGVLITDHNVRETLDICDRAYIIS---------DGKVLAEGSPEEIVNNE 230
|
Length = 243 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 2e-15
Identities = 63/237 (26%), Positives = 109/237 (45%), Gaps = 26/237 (10%)
Query: 379 FKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIIL---DGVSIDKLQL--- 432
+D + G+ + +VG SGSGK+T++ + P G + DG D +
Sbjct: 22 CRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEA 81
Query: 433 ---KWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQY 489
+ LR++ G V Q P ++ + G ++ E + A A + N IR Q +
Sbjct: 82 ERRRLLRTEWGFVHQNPR---DGLRMQVSAG---GNIGERLMAIGARHYGN-IRAEAQDW 134
Query: 490 -------DTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEAL 542
++ + SGG +QR+ IAR ++ PR++ +DE T LD + + + L
Sbjct: 135 LEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLL 194
Query: 543 DKAVV--GRTTIIIAHRLSTIR-NADVIAVVQDGQVMETGSHDELIQAESGLYTSLV 596
V G +I+ H L+ R AD + V++ GQV+E+G D ++ YT L+
Sbjct: 195 RGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLTDRVLDDPHHPYTQLL 251
|
Length = 258 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 76.0 bits (188), Expect = 2e-15
Identities = 62/227 (27%), Positives = 100/227 (44%), Gaps = 44/227 (19%)
Query: 368 FAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSI 427
E KD +P G+ + L+G +G+GKST++ LL Y P G + + G
Sbjct: 27 GRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRG--- 83
Query: 428 DKLQLKWLRSQMGL-VSQEPALFATSIKENILF--------GKE-DASMEEVIEAAKASN 477
++ L +GL P L + +ENI KE D ++E+IE +
Sbjct: 84 ---RVSSL---LGLGGGFNPEL---TGRENIYLNGRLLGLSRKEIDEKIDEIIEFS---- 130
Query: 478 AHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSE---- 533
+L D V S G K R+A A A P ILL+DE + D+
Sbjct: 131 ------ELGDFIDLPVKT----YSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEK 180
Query: 534 SERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETG 579
+R ++E L + G+T I+++H S+I+ D V++ G++ G
Sbjct: 181 CQRRLRELLKQ---GKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 80.5 bits (199), Expect = 2e-15
Identities = 63/234 (26%), Positives = 111/234 (47%), Gaps = 32/234 (13%)
Query: 373 RPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLG----GEIILDGVSID 428
RP + K+ G+ +A++G SG+GK+T++ L F +P G G ++L+G+ ID
Sbjct: 35 RPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALA-FRSPKGVKGSGSVLLNGMPID 93
Query: 429 KLQLKWLRSQMGLVSQEPALFAT-SIKENILF------------GKEDASMEEVIEAAKA 475
+++ S V Q+ T +++E+++F ++ ++EV++A
Sbjct: 94 AKEMR-AIS--AYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGL 150
Query: 476 SNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSES- 534
N V R +SGG+++R+A A ++ P +L DE TS LDS
Sbjct: 151 RKCANTR--------IGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMA 202
Query: 535 ERVVQEALDKAVVGRTTIIIAHRLST--IRNADVIAVVQDGQVMETGSHDELIQ 586
VVQ A G+T I H+ S+ D I ++ +G+V GS D+ +
Sbjct: 203 YSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVP 256
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 3e-15
Identities = 34/105 (32%), Positives = 55/105 (52%), Gaps = 6/105 (5%)
Query: 1002 IELQNVHFAYPAR--PDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKG 1059
IEL+NV + V + S++I G+ ++G SG+GKST++ LI P G
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 1060 DVKIDDRDI---RSYHLRSLRRHIALVSQEPTLFAG-TIRENIAY 1100
V +D +D+ LR LR+ I ++ Q L + T+ EN+A+
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAF 106
|
Length = 339 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 3e-15
Identities = 35/120 (29%), Positives = 63/120 (52%), Gaps = 8/120 (6%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
+E++NV ++ D + S+ I+ G+ L+G SG GK+T++ +I F P G++
Sbjct: 6 LEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEI 62
Query: 1062 KIDDRDIRSYHLRSLRRHIALVSQEPTLFAG-TIRENIAYG--ASDEIDESEIVEAAKAA 1118
+D DI + +R I +V Q LF T+ EN+A+G ++ ++EI + A
Sbjct: 63 LLDGEDI--TDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEA 120
|
Length = 352 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 3e-15
Identities = 49/186 (26%), Positives = 87/186 (46%), Gaps = 14/186 (7%)
Query: 372 SRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQ 431
SR E ++F+ T+ AG+ + + G +G GK+T++ +L P GE+ +G ++ + +
Sbjct: 9 SRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR 68
Query: 432 LKWLRSQMGLVSQEPALFAT-SIKENILFGKEDASMEEV-IEAAKASNAHNFIRQLPQQY 489
+ R + + P L S EN+ F + IE A A+ LP
Sbjct: 69 DEPHR-NILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAA- 126
Query: 490 DTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGR 549
Q+S GQ++R+A+AR + + +LDE T+ALD ++ L A + R
Sbjct: 127 ---------QLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLR-AHLAR 176
Query: 550 TTIIIA 555
I++
Sbjct: 177 GGIVLL 182
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 79.9 bits (197), Expect = 4e-15
Identities = 64/249 (25%), Positives = 113/249 (45%), Gaps = 51/249 (20%)
Query: 380 KDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDK---------- 429
++ ++ G+T+A+VG SGSGKS L R GG + D + + +
Sbjct: 33 RNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSE 92
Query: 430 ---LQLKWLR-SQMGLVSQEPAL-----------FATSIKENILFGKEDASME--EVIEA 472
Q++ +R + M ++ QEP A SI+ + +E+A +E +++
Sbjct: 93 QSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQ 152
Query: 473 AKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDS 532
+ A + + P Q +SGG +QR+ IA A+ P +L+ DE T+ALD
Sbjct: 153 VRIPEAQTILSRYPHQ-----------LSGGMRQRVMIAMALSCRPAVLIADEPTTALDV 201
Query: 533 ESE-------RVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584
+ +V+Q+ + V I I H + + AD + V+ G+ +ETGS +++
Sbjct: 202 TIQAQILQLIKVLQKEMSMGV-----IFITHDMGVVAEIADRVLVMYQGEAVETGSVEQI 256
Query: 585 IQAESGLYT 593
A YT
Sbjct: 257 FHAPQHPYT 265
|
Length = 623 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 4e-15
Identities = 54/235 (22%), Positives = 109/235 (46%), Gaps = 32/235 (13%)
Query: 372 SRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQ 431
++ + L++ G V LVG +G+GK+T++ + P G +++ G ++ L
Sbjct: 12 EFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALS 71
Query: 432 LKWLRSQMGLVSQEPAL-FATSIKENILFGK-------------EDASMEEVIEAAKASN 477
+ ++ V Q+ +L F +++ + G+ + A++E +E
Sbjct: 72 ARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGV-- 129
Query: 478 AHNFIRQLPQQYDTQVGERGV-QMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESE- 535
Q +R V +SGG++QR+ +ARA+ +A +LLLDE T++LD +
Sbjct: 130 -------------AQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQV 176
Query: 536 RVVQEALDKAVVGRTTIIIAHRLS-TIRNADVIAVVQDGQVMETGSHDELIQAES 589
R ++ G+T + H L R D + ++ DG+V G +++ A++
Sbjct: 177 RTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTADT 231
|
Length = 402 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 4e-15
Identities = 52/198 (26%), Positives = 86/198 (43%), Gaps = 37/198 (18%)
Query: 372 SRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDK-- 429
R E +F D T+ AG+ + + G +G+GK+T++ +L P GE+ G I
Sbjct: 11 ERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR 70
Query: 430 ----LQLKWLRSQMGLVSQEPALFATSIKENILFGKE--DASMEEVIEAAKASNAHNFIR 483
L +L Q G+ + L + EN+ F + + I A A
Sbjct: 71 ESYHQALLYLGHQPGI---KTEL---TALENLHFWQRFHGSGNAATIWEALA-------- 116
Query: 484 QLPQQYDTQVGERGV------QMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERV 537
QVG G+ Q+S GQ++R+A+AR + + +LDE +ALD E +
Sbjct: 117 --------QVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVAL 168
Query: 538 VQEALDKAVVGRTTIIIA 555
+ AL A + I++
Sbjct: 169 L-TALMAAHAAQGGIVLL 185
|
Length = 209 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 5e-15
Identities = 58/194 (29%), Positives = 92/194 (47%), Gaps = 24/194 (12%)
Query: 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIIL--DGVSIDKLQ---- 431
+ ++ L++ AG+ V L G SGSGKST++ L Y P G+I++ +G +D +
Sbjct: 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPR 85
Query: 432 --LKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIE-AAKASNAHNFIRQLPQQ 488
L+ R+ +G VSQ F I D E ++ A L +
Sbjct: 86 EVLEVRRTTIGYVSQ----FLRVIPR---VSALDVVAEPLLARGVPREVARAKAADLLTR 138
Query: 489 YDTQVGERGVQM-----SGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALD 543
+ + ER + SGG++QR+ IAR I ILLLDE T++LD+ + VV E +
Sbjct: 139 LN--LPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIR 196
Query: 544 KAVVGRTTII-IAH 556
+A ++ I H
Sbjct: 197 EAKARGAALVGIFH 210
|
Length = 235 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 74.5 bits (184), Expect = 5e-15
Identities = 53/178 (29%), Positives = 82/178 (46%), Gaps = 31/178 (17%)
Query: 373 RPESIIFKDFCLTIPAGKTVALVGGSGSGKST---VIALLQRFYAPLGGEIILDGVSIDK 429
R ++F T+ AG+ + L G +GSGK+T +IA L P G I LDG ID
Sbjct: 12 RGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP---PAAGTIKLDGGDID- 67
Query: 430 LQLKWLRSQMGLVSQEPALFAT-SIKENILF-----GKEDASMEEVIEAAKASN-AHNFI 482
+ + A+ ++ EN+ F G E+ + +EA + AH
Sbjct: 68 --DPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAH--- 122
Query: 483 RQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQE 540
LP Y +S GQK+R+A+AR ++ I +LDE T+ALD+ + + E
Sbjct: 123 --LPFGY----------LSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAE 168
|
Length = 207 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 1e-14
Identities = 43/131 (32%), Positives = 68/131 (51%), Gaps = 17/131 (12%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYD-----P 1056
IE++N++ Y + + ++ I + TAL+G SG GKST++ + R D
Sbjct: 2 IEIENLNLFYG---EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVR 58
Query: 1057 LKGDVKIDDRDIRSYHLR--SLRRHIALVSQEPTLFAGTIRENIAYG-----ASDEIDES 1109
++G V D +DI + LRR + +V Q+P F +I +NIAYG D+ +
Sbjct: 59 IEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELD 118
Query: 1110 EIVEAA--KAA 1118
EIVE + KAA
Sbjct: 119 EIVEESLKKAA 129
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 72.4 bits (179), Expect = 1e-14
Identities = 29/100 (29%), Positives = 56/100 (56%), Gaps = 5/100 (5%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
IE++N+ Y + + S+ +E G+ L+G +G+GK+T+I +I P G++
Sbjct: 1 IEVRNLSKRYGKKT---ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEI 57
Query: 1062 KIDDRDIRSYHLRSLRRHIALVSQEPTLFAG-TIRENIAY 1100
K+ +DI+ ++R I + +EP+L+ T+REN+
Sbjct: 58 KVLGKDIKK-EPEEVKRRIGYLPEEPSLYENLTVRENLKL 96
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 73.7 bits (182), Expect = 2e-14
Identities = 40/126 (31%), Positives = 59/126 (46%), Gaps = 13/126 (10%)
Query: 1002 IELQNVHFAYPARP-DVMIFEGFSIKIEAGKSTALVGQSGSGKST---IIGLIERFYDPL 1057
IEL+NV Y V + +++IEAG+ A+VG SGSGKST ++G +++ P
Sbjct: 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK---PT 58
Query: 1058 KGDVKIDDRDIRSYH---LRSLRR-HIALVSQEPTLFAG-TIRENIAYGAS-DEIDESEI 1111
G+V I+ +D+ L LRR I V Q L T+ EN+
Sbjct: 59 SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRR 118
Query: 1112 VEAAKA 1117
AA+
Sbjct: 119 KRAAEE 124
|
Length = 226 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 2e-14
Identities = 39/130 (30%), Positives = 71/130 (54%), Gaps = 8/130 (6%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
I+++NV F+YP + + S +I G+ A++G +GSGKSTI ++ P G++
Sbjct: 8 IKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI 66
Query: 1062 KIDDRDIRSYHLRSLRRHIALVSQEP-TLFAG-TIRENIAYGASDE-IDESE----IVEA 1114
KID I +L+ +R+ I ++ Q P F G T+ ++IA+G ++ + + I +
Sbjct: 67 KIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDL 126
Query: 1115 AKAANAHDFI 1124
AK D++
Sbjct: 127 AKKVGMEDYL 136
|
Length = 271 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 2e-14
Identities = 42/112 (37%), Positives = 63/112 (56%), Gaps = 16/112 (14%)
Query: 1002 IELQNVHFAYPA-RPDVMIFEG-----FSIKIEAGKSTALVGQSGSGKSTIIGLIERFYD 1055
I LQNV + Y A P FEG ++ IE G TA +G +GSGKSTI+ L+ +
Sbjct: 3 INLQNVSYTYQAGTP----FEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV 58
Query: 1056 PLKGDVKIDDRDIRSY----HLRSLRRHIALVSQ--EPTLFAGTIRENIAYG 1101
P +G V++DD I S ++ +R+ + LV Q E LF T+ +++A+G
Sbjct: 59 PTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFG 110
|
Length = 280 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 2e-14
Identities = 48/187 (25%), Positives = 90/187 (48%), Gaps = 13/187 (6%)
Query: 377 IIFKDFCLTIPAGKTVALVGGSGSGKST---VIALLQRFYAPLGGEIILDGVSIDKLQLK 433
I D L + +G+ +A++G SGSGK+T I+ G+I+ +G Q
Sbjct: 21 RILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQ-- 78
Query: 434 WLRSQMGLVSQEPALFAT-SIKENILFGKEDASMEEVIEAAKASNAHNF-IRQLPQQYDT 491
+ + + V Q+ L +++E + + + +A + + +R L T
Sbjct: 79 FQKC-VAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLA---LT 134
Query: 492 QVGERGVQ-MSGGQKQRIAIARAIIKAPRILLLDEATSALDSESE-RVVQEALDKAVVGR 549
++G V+ +SGG+++R++IA ++ P++L+LDE TS LDS + +V A R
Sbjct: 135 RIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNR 194
Query: 550 TTIIIAH 556
I+ H
Sbjct: 195 IVILTIH 201
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 2e-14
Identities = 49/199 (24%), Positives = 83/199 (41%), Gaps = 54/199 (27%)
Query: 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLG-GE 419
+E + + A P ++ KD I G + + G SG+GKS++ L + P G G
Sbjct: 1 IELENLSLATPD--GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLW-PWGSGR 57
Query: 420 IILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAH 479
I + + + Q P L +++E +++ +D
Sbjct: 58 IGMPE-----------GEDLLFLPQRPYLPLGTLREQLIYPWDDV--------------- 91
Query: 480 NFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQ 539
+SGG++QR+A AR ++ P+ + LDEATSALD ESE +
Sbjct: 92 --------------------LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLY 131
Query: 540 EALDKAVVGRTTII-IAHR 557
+ L + T+I + HR
Sbjct: 132 QLLKEL---GITVISVGHR 147
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 77.3 bits (191), Expect = 2e-14
Identities = 51/231 (22%), Positives = 102/231 (44%), Gaps = 31/231 (13%)
Query: 352 EILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQR 411
+ +N + + + P + + + G+ + + G SG+GK++++ L
Sbjct: 384 DFDDNADHGITLENLSLRTPD--GQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAG 441
Query: 412 FYAPLG-GEIILDGVSIDKLQLKWLRSQMGL--VSQEPALFATSIKENILF--GKEDASM 466
+ P G G I + + L + Q P L +++E + + D S
Sbjct: 442 LW-PWGSGRISM-------------PADSALLFLPQRPYLPQGTLREALCYPNAAPDFSD 487
Query: 467 EEVIEAAKASNAHNFIRQLPQQYD-TQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDE 525
E++ + +L ++ +V +SGG++QR+A AR ++ P+ + LDE
Sbjct: 488 AELVAVLHKVGLGDLAERLDEEDRWDRV------LSGGEQQRLAFARLLLHKPKWVFLDE 541
Query: 526 ATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN--ADVIAVVQDGQ 574
ATSALD E+E + + L + + T I + HR T+ N + + ++ D
Sbjct: 542 ATSALDEETEDRLYQLLKEELPDATVISVGHR-PTLWNFHSRQLELLDDAG 591
|
Length = 604 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.0 bits (182), Expect = 3e-14
Identities = 41/130 (31%), Positives = 74/130 (56%), Gaps = 11/130 (8%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
IE++++HF Y + +G S+ I G TAL+G +G+GKST++ + Y P +G V
Sbjct: 5 IEVEDLHFRY--KDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRV 62
Query: 1062 KIDDRDIRSYHLRSLRRHIALVSQEP--TLFAGTIRENIAYG------ASDEIDESEIVE 1113
K+ R++ + + + +R + LV Q+P +F+ T+ +++A+G DE++ + E
Sbjct: 63 KVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVER-RVEE 121
Query: 1114 AAKAANAHDF 1123
A KA DF
Sbjct: 122 ALKAVRMWDF 131
|
Length = 274 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.3 bits (186), Expect = 3e-14
Identities = 63/216 (29%), Positives = 106/216 (49%), Gaps = 41/216 (18%)
Query: 384 LTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDG-VSIDKLQLKWL---RSQM 439
LT+PA A+ G SG+GK+++I + P G I+L+G V D + L + ++
Sbjct: 19 LTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRI 78
Query: 440 GLVSQEPALFA-TSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGV 498
G V Q+ LF ++ N+ +G M + + Q+D V G+
Sbjct: 79 GYVFQDARLFPHYKVRGNLRYG-----MA---------------KSMVAQFDKIVALLGI 118
Query: 499 Q---------MSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQ---EALDKAV 546
+ +SGG+KQR+AI RA++ AP +LL+DE ++LD +R + E L + +
Sbjct: 119 EPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREI 178
Query: 547 VGRTTII-IAHRLSTI-RNADVIAVVQDGQVMETGS 580
I+ ++H L I R AD + V++ G+V G
Sbjct: 179 --NIPILYVSHSLDEILRLADRVVVLEQGKVKAFGP 212
|
Length = 352 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.9 bits (181), Expect = 3e-14
Identities = 63/228 (27%), Positives = 107/228 (46%), Gaps = 29/228 (12%)
Query: 377 IIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLR 436
+ ++ + IP G A++G +G GKST++ L R P G + LDG I K +
Sbjct: 21 TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVA 80
Query: 437 SQMGLVSQEPALFA-TSIKENILFG------------KEDASMEEVIEAAKASNAHNFIR 483
++GL++Q +++E + G KED E V +A +A+ +
Sbjct: 81 RRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDE--EAVTKAMQATGITHLAD 138
Query: 484 QLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALD 543
Q DT +SGGQ+QR IA + + I+LLDE T+ LD + + E L
Sbjct: 139 ---QSVDT--------LSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLS 187
Query: 544 K--AVVGRTTIIIAHRLS-TIRNADVIAVVQDGQVMETGSHDELIQAE 588
+ G T + H L+ R A + +++G+++ G+ E++ AE
Sbjct: 188 ELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVTAE 235
|
Length = 265 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 3e-14
Identities = 64/241 (26%), Positives = 106/241 (43%), Gaps = 39/241 (16%)
Query: 370 YPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDK 429
E KD I G+ V ++G +G+GKST++ L+ Y P G++ + G
Sbjct: 34 GRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTG----- 88
Query: 430 LQLKWLRSQMGL-VSQEPALFATSIKENILF--------GKE-DASMEEVIEAAKASNAH 479
++ L + L +P L + +ENI KE D ++E+IE A+
Sbjct: 89 -KVAPL---IELGAGFDPEL---TGRENIYLRGLILGLTRKEIDEKVDEIIEFAE---LG 138
Query: 480 NFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSE-SERVV 538
+FI Q + Y S G R+A + A P ILLLDE + D+ E+ +
Sbjct: 139 DFIDQPVKTY-----------SSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCL 187
Query: 539 QEALDKAVVGRTTIIIAHRLSTIRNA-DVIAVVQDGQVMETGSHDELIQA-ESGLYTSLV 596
+ + +T ++++H L I+ D ++ GQ+ GS +E+I A E L L
Sbjct: 188 ERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPAYEEDLADRLS 247
Query: 597 R 597
Sbjct: 248 L 248
|
Length = 249 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 4e-14
Identities = 34/103 (33%), Positives = 58/103 (56%), Gaps = 7/103 (6%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
IE++ V ++ R I +G + + G+ A++G SGSGKST++ LI P KG++
Sbjct: 9 IEVRGVTKSFGDRV---ILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEI 65
Query: 1062 KIDDRDIRSY---HLRSLRRHIALVSQEPTLFAG-TIRENIAY 1100
ID DI L +R+ + ++ Q+ LF+ T+ EN+A+
Sbjct: 66 LIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAF 108
|
Length = 263 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 72.1 bits (178), Expect = 5e-14
Identities = 42/110 (38%), Positives = 57/110 (51%), Gaps = 18/110 (16%)
Query: 1002 IELQNVHFAYPARPD-VMIFEGFSIKIEAGKSTALVGQSGSGKST---IIGLIERFYDPL 1057
IEL+N+ Y + V +G S+ IE G+ A+VG SGSGKST I+G ++R P
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR---PT 57
Query: 1058 KGDVKIDDRDIRSYHLRSL----RRHIALVSQE----PTLFAGTIRENIA 1099
G+V++D DI + L RRHI V Q P L T EN+
Sbjct: 58 SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDL---TALENVE 104
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 5e-14
Identities = 36/103 (34%), Positives = 55/103 (53%), Gaps = 6/103 (5%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
IE NV YP +G +I I AG+ LVG SG+GKST++ LI + P G +
Sbjct: 1 IEFINVTKTYP--NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTI 58
Query: 1062 KIDDRDIRSYHLRS---LRRHIALVSQEPTLFAG-TIRENIAY 1100
+++ +D+ R+ LRR I +V Q+ L + EN+A+
Sbjct: 59 RVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAF 101
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 5e-14
Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 4/103 (3%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
+ +N+ Y + I S+ + GK TAL+G +G GKST++ R P G V
Sbjct: 3 LRTENLTVGYGTKR---ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTV 59
Query: 1062 KIDDRDIRSYHLRSLRRHIALVSQEPTLFAG-TIRENIAYGAS 1103
+ D+ I R L R +AL+ Q G T+RE +AYG S
Sbjct: 60 FLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRS 102
|
Length = 255 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 7e-14
Identities = 63/221 (28%), Positives = 103/221 (46%), Gaps = 30/221 (13%)
Query: 384 LTIPAGKTVALVGGSGSGKSTVIALLQRFYAP----LGGEIILDGVSIDKLQLKWLRSQM 439
LT+ G+ +ALVGGSGSGKS A G ++LDG + L+ ++
Sbjct: 24 LTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALR--GRKI 81
Query: 440 GLVSQEP-ALF------ATSIKENIL-FGKE--DASMEEVIEAAKASNAHNFIRQLPQQY 489
+ Q P + F T +E L GK DA++ +EA NA ++ P
Sbjct: 82 ATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYP--- 138
Query: 490 DTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGR 549
+MSGG QR+ IA A++ ++ DE T+ LD ++ + + L+ V R
Sbjct: 139 --------FEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKR 190
Query: 550 T--TIIIAHRLSTI-RNADVIAVVQDGQVMETGSHDELIQA 587
+++ H + + R AD +AV+ G+++E G + L A
Sbjct: 191 ALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNA 231
|
Length = 254 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 7e-14
Identities = 55/224 (24%), Positives = 111/224 (49%), Gaps = 34/224 (15%)
Query: 384 LTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIIL----DGVSIDKLQLKWLRSQ- 438
L + G+ +VG SG+GK+T+ ++ P GE+ + + V + K R +
Sbjct: 305 LEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD-GRGRA 363
Query: 439 ---MGLVSQEPALFA-TSIKENIL------FGKEDASMEEVIEAAKA----SNAHNFIRQ 484
+G++ QE L+ ++ +N+ E A M+ VI A + +
Sbjct: 364 KRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDK 423
Query: 485 LPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDK 544
P + +S G++ R+A+A+ +IK PRI++LDE T +D ++ V ++ K
Sbjct: 424 YPDE-----------LSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILK 472
Query: 545 A--VVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELI 585
A + +T II++H + + + D A+++DG++++ G +E++
Sbjct: 473 AREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIV 516
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 8e-14
Identities = 59/224 (26%), Positives = 107/224 (47%), Gaps = 32/224 (14%)
Query: 384 LTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEII------------------LDGV 425
+ I G+ +A++G +GSGK+T I L P G I L+ +
Sbjct: 28 VEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKL 87
Query: 426 SIDKL------QLKWLRSQMGLVSQ--EPALFATSIKENILFGKEDASMEEVIEAAKASN 477
I K ++K +R ++G+V Q E LF +I+++I+FG + + EA K +
Sbjct: 88 VIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKE-EAKKRAA 146
Query: 478 AHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERV 537
+ + L + Y + ++SGGQK+R+A+A + P L+ DE T+ LD + +
Sbjct: 147 KYIELVGLDESY---LQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKE 203
Query: 538 VQEALDKA-VVGRTTIIIAHRL-STIRNADVIAVVQDGQVMETG 579
+ E D G+T I++ H L + + +DG++++ G
Sbjct: 204 ILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGKIIKDG 247
|
Length = 305 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 9e-14
Identities = 70/219 (31%), Positives = 106/219 (48%), Gaps = 21/219 (9%)
Query: 375 ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPL----GGEIILDGVSIDKL 430
+ +I KD L I G+ V VG SG GKST L R A L G++ + ++ +
Sbjct: 15 DVVISKDINLDIHEGEFVVFVGPSGCGKST----LLRMIAGLEDITSGDLFIGEKRMNDV 70
Query: 431 QLKWLRSQMGLVSQEPALFA-TSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQY 489
+G+V Q AL+ S+ EN+ FG + A ++ E + N + QL
Sbjct: 71 PPA--ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKK-EEINQRVNQVAEVLQLAHLL 127
Query: 490 DTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSE---SERVVQEALDKAV 546
D + +SGGQ+QR+AI R ++ P + LLDE S LD+ R+ L K
Sbjct: 128 DRKPKA----LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKR- 182
Query: 547 VGRTTIIIAH-RLSTIRNADVIAVVQDGQVMETGSHDEL 584
+GRT I + H ++ + AD I V+ G+V + G EL
Sbjct: 183 LGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
|
Length = 369 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 9e-14
Identities = 54/216 (25%), Positives = 109/216 (50%), Gaps = 17/216 (7%)
Query: 380 KDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439
K T+ G+T+A++G +GSGKST+ +L P GEI+++ + + ++
Sbjct: 30 KPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRI 89
Query: 440 GLVSQEPALFATSIKENILFG-------KEDASMEEVIEAAKASNAHNFIRQLPQQYDTQ 492
++ Q+P TS+ + G + + +E + + LP +
Sbjct: 90 RMIFQDPN---TSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYY 146
Query: 493 VGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALD-SESERVVQEALD-KAVVGRT 550
++ GQKQR+A+ARA+I P+I++ DEA ++LD S +++ L+ + G +
Sbjct: 147 PH----MLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGIS 202
Query: 551 TIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELI 585
I + + I++ +D + V+ +G+V+E GS +++
Sbjct: 203 YIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVL 238
|
Length = 267 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 71.1 bits (174), Expect = 1e-13
Identities = 60/224 (26%), Positives = 109/224 (48%), Gaps = 26/224 (11%)
Query: 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI 420
+ F+ V AY +++ F + G+ L G SG+GKST++ L+ P G+I
Sbjct: 2 IRFEHVSKAYLGGRQALQGVTFHMR--PGEMAFLTGHSGAGKSTLLKLICGIERPSAGKI 59
Query: 421 ILDGVSIDKL---QLKWLRSQMGLVSQEPALFAT-SIKENILFGKEDASMEEVIEAAKAS 476
G I +L ++ +LR Q+G++ Q+ L ++ +N+ ++ +I A
Sbjct: 60 WFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNV-------AIPLIIAGASGD 112
Query: 477 NAHNFIRQLPQQYDTQVG------ERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSAL 530
+ IR+ +VG +Q+SGG++QR+ IARA++ P +LL DE T L
Sbjct: 113 D----IRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNL 168
Query: 531 DSE-SERVVQEALDKAVVGRTTIIIAHRLSTI--RNADVIAVVQ 571
D SE +++ + VG T ++ H + I R+ ++ +
Sbjct: 169 DDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSD 212
|
Length = 222 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 2e-13
Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
IE++N+ YP + S+ I G+ AL+G SG+GKST++ + +P G V
Sbjct: 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSV 58
Query: 1062 KIDDRDIRSY---HLRSLRRHIALVSQEPTL 1089
ID DI LR LRR I ++ Q+ L
Sbjct: 59 LIDGTDINKLKGKALRQLRRQIGMIFQQFNL 89
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.7 bits (175), Expect = 2e-13
Identities = 43/129 (33%), Positives = 71/129 (55%), Gaps = 7/129 (5%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
+E++N+ F Y DV G S I G+ +++GQ+GSGKST LI+ ++ +G V
Sbjct: 5 LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV 64
Query: 1062 KIDDRDIRSYHLRSLRRHIALVSQEP--TLFAGTIRENIAYGASDE-IDESEIV----EA 1114
KID + + ++ +LRR I +V Q P T+ +++A+G ++ I E++ EA
Sbjct: 65 KIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEA 124
Query: 1115 AKAANAHDF 1123
A N DF
Sbjct: 125 LLAVNMLDF 133
|
Length = 277 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 2e-13
Identities = 75/253 (29%), Positives = 112/253 (44%), Gaps = 60/253 (23%)
Query: 379 FKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIIL---DGVSIDKLQL--- 432
+D + G+ + +VG SGSGK+T++ L AP GE+ DG D L
Sbjct: 22 CRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEA 81
Query: 433 ---KWLRSQMGLVSQEPA---LFATSIKENI---LFG---------KEDAS--MEEV-IE 471
+ LR++ G V Q P S NI L + A +E V I+
Sbjct: 82 ERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEID 141
Query: 472 AAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALD 531
AA+ I LP + SGG +QR+ IAR ++ PR++ +DE T LD
Sbjct: 142 AAR-------IDDLPTTF-----------SGGMQQRLQIARNLVTHPRLVFMDEPTGGLD 183
Query: 532 -SESERV-------VQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHD 582
S R+ V+E L AVV I+ H L+ R A + V++ G+V+E+G D
Sbjct: 184 VSVQARLLDLLRGLVRE-LGLAVV-----IVTHDLAVARLLAHRLLVMKQGRVVESGLTD 237
Query: 583 ELIQAESGLYTSL 595
+++ YT L
Sbjct: 238 QVLDDPQHPYTQL 250
|
Length = 258 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 74.0 bits (182), Expect = 3e-13
Identities = 38/116 (32%), Positives = 67/116 (57%), Gaps = 4/116 (3%)
Query: 985 IEPEDPEGHQPERI-TGNIELQNVHFAYPARPDV-MIFEGFSIKIEAGKSTALVGQSGSG 1042
IEP P P + G++ + V Y R + ++ G S +I + +VG++GSG
Sbjct: 1291 IEPASPTSAAPHPVQAGSLVFEGVQMRY--REGLPLVLRGVSFRIAPREKVGIVGRTGSG 1348
Query: 1043 KSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENI 1098
KST++ R + G+++++ R+I +Y LR LRR +++ Q+P LF GT+R+N+
Sbjct: 1349 KSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNV 1404
|
Length = 1560 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 74.7 bits (183), Expect = 3e-13
Identities = 61/226 (26%), Positives = 110/226 (48%), Gaps = 27/226 (11%)
Query: 384 LTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVS 443
+T + A +G +G+GK+T +++L P G +++ G I+ L +R +G+
Sbjct: 951 ITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSLGMCP 1009
Query: 444 QEPALFA-TSIKENILF-----GK--EDAS--MEEVIEAAKASNAHNFIRQLPQQYDTQV 493
Q LF ++ E+ILF G+ E+A ME ++E + N
Sbjct: 1010 QHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRN------------- 1056
Query: 494 GERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTII 553
E +SGG ++++++A A + ++++LDE TS +D S R + + L K GRT I+
Sbjct: 1057 -EEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIM 1115
Query: 554 IAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQA-ESGLYTSLVR 597
H + D IA++ G++ +G+ L +G Y +LVR
Sbjct: 1116 STHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNCFGTGFYLTLVR 1161
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.8 bits (173), Expect = 3e-13
Identities = 70/238 (29%), Positives = 115/238 (48%), Gaps = 28/238 (11%)
Query: 384 LTIPAGKTVALVGGSGSGKSTVIALLQRFYA---PLGGEIILDGVSIDKL-----QLKWL 435
L I G+ VAL+G SGSGKST++ L G I L G ++ + ++
Sbjct: 25 LNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKS 84
Query: 436 RSQMGLVSQEPALF-ATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQ---QYDT 491
R+ G + Q+ L S+ EN+L G ++ + F R+ Q Q T
Sbjct: 85 RANTGYIFQQFNLVNRLSVLENVLIGALGST------PFWRTCFSWFTREQKQRALQALT 138
Query: 492 QVG------ERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALD-- 543
+VG +R +SGGQ+QR+AIARA+++ +++L DE ++LD ES R+V + L
Sbjct: 139 RVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDI 198
Query: 544 KAVVGRTTIIIAHRLS-TIRNADVIAVVQDGQVMETGSHDELIQAE-SGLYTSLVRLQ 599
G T ++ H++ +R + I ++ G V GS + LY S+ R++
Sbjct: 199 NQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQFDNERFDHLYRSINRVE 256
|
Length = 262 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 4e-13
Identities = 59/265 (22%), Positives = 109/265 (41%), Gaps = 40/265 (15%)
Query: 332 ERIMEMIKRVPKIDSDSMEGEILENVLGE--VEFKCVQFAYPSRPESIIFKDFCLTIPAG 389
E + + V + + LG+ +EF+ V Y ++ KD I G
Sbjct: 291 EARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGGR--LLLKDLSFRIDRG 348
Query: 390 KTVALVGGSGSGKSTVIALLQRFYAPLGGEIIL-DGVSIDKLQLKWLRSQMGLVSQEPAL 448
+A+VG +G+GKST++ LL PL G + + + V I G Q
Sbjct: 349 DRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKI------------GYFDQHRDE 396
Query: 449 FATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDT---QVGERGVQMSGGQK 505
L + ++ E + +R ++ + +SGG+K
Sbjct: 397 ---------LDPDK--TVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEK 445
Query: 506 QRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDK---AVVGRTTIIIAHRLSTIR 562
R+ +A+ +++ P +LLLDE T+ LD ES ++EAL V ++++H +
Sbjct: 446 ARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEGTV-----LLVSHDRYFLD 500
Query: 563 N-ADVIAVVQDGQVMETGSHDELIQ 586
A I +V+D G +++ ++
Sbjct: 501 RVATRIWLVEDKVEEFEGGYEDYLE 525
|
Length = 530 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 4e-13
Identities = 56/212 (26%), Positives = 98/212 (46%), Gaps = 58/212 (27%)
Query: 369 AYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIIL-DGVSI 427
P P+ I KD L+ G + ++G +G+GKST++ ++ GE G+ +
Sbjct: 13 VVP--PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKV 70
Query: 428 DKLQLKWLRSQMGLVSQEPALFAT-SIKENI-------------------LFGKEDASME 467
G + QEP L T +++EN+ F + DA M+
Sbjct: 71 ------------GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMD 118
Query: 468 EVI-EAAK------ASNAHNFIRQLPQ--------QYDTQVGERGVQMSGGQKQRIAIAR 512
++ E A+ A++A + R+L +D V + +SGG+++R+A+ R
Sbjct: 119 ALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTK----LSGGERRRVALCR 174
Query: 513 AIIKAPRILLLDEATSALDSES----ERVVQE 540
++ P +LLLDE T+ LD+ES E+ +QE
Sbjct: 175 LLLSKPDMLLLDEPTNHLDAESVAWLEQHLQE 206
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.0 bits (171), Expect = 5e-13
Identities = 38/107 (35%), Positives = 60/107 (56%), Gaps = 10/107 (9%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYD-----P 1056
I+ ++V+F Y D +G S++IE A +G SG GKST + L R D
Sbjct: 4 IDARDVNFWYG---DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATR 60
Query: 1057 LKGDVKIDDRDI--RSYHLRSLRRHIALVSQEPTLFAGTIRENIAYG 1101
L+G+++ID R+I + + LR+++ +V Q P F +I EN+AYG
Sbjct: 61 LEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYG 107
|
Length = 250 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 72.7 bits (178), Expect = 6e-13
Identities = 70/272 (25%), Positives = 117/272 (43%), Gaps = 27/272 (9%)
Query: 321 LKYFSEAMAAGERIMEMIKRV----PKIDSDSMEGEIL---ENVLGEVEFKCVQFAYPSR 373
L ++A A +R+ + +R P+++ + +L + + +E K V +
Sbjct: 291 LPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAP 350
Query: 374 PESIIFK--DFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQ 431
S F L I G V +VG +G GKST+ L Y P GEI+LDG ++
Sbjct: 351 EGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADS 410
Query: 432 LKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDT 491
R LF+ + LF +D + E A NA ++++L
Sbjct: 411 RDDYRD----------LFSAIFADFHLF--DDLIGPDEGEHASLDNAQQYLQRLEIADKV 458
Query: 492 QVGERG----VQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEAL--DKA 545
++ + G +S GQ++R+A+ A ++ ILL DE + D +R E L D
Sbjct: 459 KIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLK 518
Query: 546 VVGRTTIIIAHRLSTIRNADVIAVVQDGQVME 577
G+T III+H AD I + G +++
Sbjct: 519 RQGKTIIIISHDDQYFELADQIIKLAAGCIVK 550
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 7e-13
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 9/101 (8%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
+E++ V ++ V + E ++ +E G+ A++G SG GKST++ LI P G+V
Sbjct: 4 LEIEGVSKSFG---GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV 60
Query: 1062 KIDDRDIRSYHLRSLRRHIALVSQEPTLFAG-TIRENIAYG 1101
+D R + I V QE L T+ +N+A G
Sbjct: 61 LLDGRPVTGPG-----PDIGYVFQEDALLPWLTVLDNVALG 96
|
Length = 248 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 67.8 bits (167), Expect = 7e-13
Identities = 41/207 (19%), Positives = 82/207 (39%), Gaps = 50/207 (24%)
Query: 379 FKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQ-LKWLRS 437
+D + AG+ V + G G+G++ + L P GEI LDG + + +R+
Sbjct: 16 VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRA 75
Query: 438 QMGLVSQEP---ALFAT-SIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQV 493
+ V ++ L S+ ENI
Sbjct: 76 GIAYVPEDRKREGLVLDLSVAENIALS--------------------------------- 102
Query: 494 GERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTII 553
+SGG +Q++ +AR + + PR+L+LDE T +D ++ + + + ++
Sbjct: 103 ----SLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVL 158
Query: 554 IAHRLST-----IRNADVIAVVQDGQV 575
+ +S+ + D I V+ +G++
Sbjct: 159 L---ISSELDELLGLCDRILVMYEGRI 182
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 7e-13
Identities = 62/214 (28%), Positives = 112/214 (52%), Gaps = 17/214 (7%)
Query: 384 LTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI-------ILDGVSIDKLQLKWLR 436
L I G+ L+G SGSGKST++ + G + +D + D L+ LR
Sbjct: 45 LDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATLRRLR 104
Query: 437 S-QMGLVSQEPALFA-TSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVG 494
+ ++ +V Q+ AL +++EN+ FG E M + E K + + L Q D + G
Sbjct: 105 THRVSMVFQQFALLPWRTVEENVAFGLEMQGMPKA-ERRKRVDEQLELVGLAQWADRKPG 163
Query: 495 ERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALD--KAVVGRTTI 552
E +SGG +QR+ +ARA ILL+DE SALD +Q+ L ++ + +T +
Sbjct: 164 E----LSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLELQSKLKKTIV 219
Query: 553 IIAHRL-STIRNADVIAVVQDGQVMETGSHDELI 585
++H L ++ + IA+++ G++++ G+ +E++
Sbjct: 220 FVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIV 253
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 9e-13
Identities = 66/230 (28%), Positives = 109/230 (47%), Gaps = 40/230 (17%)
Query: 381 DFCLTIPAGKTVALVGGSGSGKS-TVIALLQRFYAP--LGGEIILDGVSIDKL---QLKW 434
D ++ AG+T+ +VG SGSGKS T AL+ A +GG +G I L +L
Sbjct: 34 DLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNK 93
Query: 435 LRS-QMGLVSQEPALFATS------IKENIL--------FGKEDASMEEV--IEAAKASN 477
LR+ Q+ ++ Q+P TS + E ++ K +A E V ++A K
Sbjct: 94 LRAEQISMIFQDPM---TSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPE 150
Query: 478 AHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERV 537
A ++ P ++ SGG +QR+ IA A++ P++L+ DE T+ALD +
Sbjct: 151 ARKRMKMYPHEF-----------SGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQ 199
Query: 538 VQEALD--KAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584
+ L+ K I+I H L + D + V+ G+ ME G+ ++
Sbjct: 200 IMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDV 249
|
Length = 330 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 9e-13
Identities = 53/222 (23%), Positives = 105/222 (47%), Gaps = 31/222 (13%)
Query: 382 FCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWL-RSQMG 440
+ AG+ + LVG +G+GKST++A + G I G ++ L R +
Sbjct: 18 LSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSGSGSIQFAGQPLEAWSATELARHRAY 76
Query: 441 LVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQM 500
L Q+ FA + + + D + E++ + A +L + + Q+
Sbjct: 77 LSQQQTPPFAMPVWHYLTLHQPDKTRTELLN--DVAGALALDDKLGRSTN--------QL 126
Query: 501 SGGQKQRIAIARAIIK-------APRILLLDEATSALDSESERVVQE-ALDKAVV----- 547
SGG+ QR+ +A +++ A ++LLLDE ++LD V Q+ ALD+ +
Sbjct: 127 SGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLD-----VAQQSALDRLLSALCQQ 181
Query: 548 GRTTIIIAHRLS-TIRNADVIAVVQDGQVMETGSHDELIQAE 588
G ++ +H L+ T+R+A +++ G+++ +G +E++
Sbjct: 182 GLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTPP 223
|
Length = 248 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 1e-12
Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 5/104 (4%)
Query: 1002 IELQNVHFAYPARP-DVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGD 1060
IEL+NV + V + S+ + G+ ++G+SG+GKST+I I P G
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61
Query: 1061 VKIDDRDI---RSYHLRSLRRHIALVSQEPTLFAG-TIRENIAY 1100
V +D D+ LR RR I ++ Q L + T+ EN+A
Sbjct: 62 VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVAL 105
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 1e-12
Identities = 62/251 (24%), Positives = 111/251 (44%), Gaps = 51/251 (20%)
Query: 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRF--YAPLGGEIILDGVSIDKLQLKWL 435
+ K+ TI G+ + ++G SG+GKS ++ +L+ Y P G II +K
Sbjct: 15 VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVER 74
Query: 436 RSQMG---------LVSQEPALFATSIKENILFGKEDASM----------EEVIEAAKAS 476
S++G L +E + S K K A M + V++
Sbjct: 75 PSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLD----- 129
Query: 477 NAHNFIRQLPQ-QYD--------------TQVGER----GVQMSGGQKQRIAIARAIIKA 517
N + L + Y+ Q+ R +SGG+KQR+ +AR + K
Sbjct: 130 ---NVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKE 186
Query: 518 PRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQ 574
P + L DE T LD ++ ++V AL++AV G + ++ +H I + +D +++G+
Sbjct: 187 PFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGE 246
Query: 575 VMETGSHDELI 585
+ E G+ DE++
Sbjct: 247 IKEEGTPDEVV 257
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 1e-12
Identities = 54/219 (24%), Positives = 107/219 (48%), Gaps = 19/219 (8%)
Query: 380 KDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439
K T+ G+T+A++G +GSGKST+ +L P GE+++D + + ++
Sbjct: 30 KPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRI 89
Query: 440 GLVSQEPALFATSIKENILFGKE-DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGV 498
++ Q+P+ TS+ + D + + I L QVG
Sbjct: 90 RMIFQDPS---TSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETL-----RQVGLLPD 141
Query: 499 Q-------MSGGQKQRIAIARAIIKAPRILLLDEATSALD-SESERVVQEALD-KAVVGR 549
++ GQKQR+ +ARA+I P++++ DEA ++LD S +++ L+ + G
Sbjct: 142 HASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGI 201
Query: 550 TTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQA 587
+ I + L +++ +D + V+ G+V+E GS +++ +
Sbjct: 202 SYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLAS 240
|
Length = 267 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 1e-12
Identities = 50/164 (30%), Positives = 85/164 (51%), Gaps = 17/164 (10%)
Query: 384 LTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKL---QLKWLRSQ-M 439
L + G+T+AL+G SGSGKST++A+L GE+ L G + ++ LR++ +
Sbjct: 31 LVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHV 90
Query: 440 GLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGER--- 496
G V Q L T L E+ + ++ + + N + L +Q +G+R
Sbjct: 91 GFVFQSFMLIPT------LNALENVELPALLRGESSRQSRNGAKALLEQLG--LGKRLDH 142
Query: 497 -GVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSES-ERVV 538
Q+SGG++QR+A+ARA P +L DE T LD ++ +++
Sbjct: 143 LPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIA 186
|
Length = 228 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 2e-12
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGD 1060
IE++N+ YP + +++I G+ A++G SG+GKST++ + DP G+
Sbjct: 3 MIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGE 60
Query: 1061 VKIDDRDIRSYH---LRSLRRHIALVSQEPTL 1089
+ + I LR LRR I ++ Q+ L
Sbjct: 61 ILFNGVQITKLKGKELRKLRRDIGMIFQQFNL 92
|
Length = 258 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 2e-12
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 1044 STIIGLIERFYDPLKGDVKIDDRDIRSY-HLRSLRRHIALVSQEPTLFAG-TIRENIAYG 1101
ST++ LI P G + +D D + LR+ I +V Q+P LF T+REN+ +G
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 1102 ASDEIDESEIVEAAKAANAHDFI 1124
D+ ++ EA + DF+
Sbjct: 61 LRDKEADARAEEALERVGLPDFL 83
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 2e-12
Identities = 40/136 (29%), Positives = 70/136 (51%), Gaps = 17/136 (12%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
+ L V + Y P E F + + G+ A++G SG+GKST++ LI F +P G +
Sbjct: 1 LALDKVRYEYEHLP----ME-FDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSI 55
Query: 1062 KIDDRDIRSYHLRS--LRRHIALVSQEPTLFAG-TIRENIAYGAS-----DEIDESEIVE 1113
K++D+ H +R ++++ QE LFA T+R+NI G + + ++V+
Sbjct: 56 KVNDQS----HTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVD 111
Query: 1114 AAKAANAHDFIAGLNE 1129
AA+ D++ L E
Sbjct: 112 AAQQVGIADYLDRLPE 127
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 2e-12
Identities = 63/233 (27%), Positives = 111/233 (47%), Gaps = 44/233 (18%)
Query: 381 DFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKW------ 434
D AG+ AL+G +G+GKST++ +L Y P G I++DG ++++
Sbjct: 22 DISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQ-----EMRFASTTAA 76
Query: 435 LRSQMGLVSQE----PALFATSIKENILFGKEDASM-----EEVIEAAKASNAHNFIRQL 485
L + + ++ QE P + ++ EN+ G+ + A+ H +
Sbjct: 77 LAAGVAIIYQELHLVPEM---TVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDID 133
Query: 486 PQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDS-ESE---RVVQEA 541
P DT + +S GQ+Q + IA+A+ + R++ DE TS+L + E E RV++E
Sbjct: 134 P---DTPLKY----LSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIREL 186
Query: 542 LDKAVVGRTTIIIAHRLSTI-RNADVIAVVQDGQVMETG------SHDELIQA 587
+ GR + ++HR+ I D I V +DG+ + T D+L+QA
Sbjct: 187 RAE---GRVILYVSHRMEEIFALCDAITVFKDGRYVATFDDMAQVDRDQLVQA 236
|
Length = 501 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 3e-12
Identities = 45/188 (23%), Positives = 83/188 (44%), Gaps = 16/188 (8%)
Query: 373 RPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQL 432
E + ++ L I G VA+VG SG+GK+T++ ++ G E ++
Sbjct: 393 VIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPK 452
Query: 433 KWLRSQMGLVSQEPALFATSIKENILFGKEDASM-EEVIEAAKASNAHNFIRQLPQQYDT 491
+ S + EP +I E++ D + E++ A S+A + R+
Sbjct: 453 NTV-SALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFS----- 506
Query: 492 QVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGR 549
++S GQK+R +A+ + + P +LL+DE + LD + V + + G
Sbjct: 507 -------ELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGI 559
Query: 550 TTIIIAHR 557
T I++ HR
Sbjct: 560 TLIVVTHR 567
|
Length = 593 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 4e-12
Identities = 68/247 (27%), Positives = 112/247 (45%), Gaps = 40/247 (16%)
Query: 372 SRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVI-ALLQRFYAPLG-------GEIILD 423
+R I +D L I G+ AL+G +G+GKST++ AL G++ L+
Sbjct: 10 ARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLN 69
Query: 424 G---VSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHN 480
G +ID +L LR+ + +Q PA FA S +E +L G+ + A A +
Sbjct: 70 GEPLAAIDAPRLARLRAVLPQAAQ-PA-FAFSAREIVLLGRYPHA-----RRAGALTHRD 122
Query: 481 FIRQLPQQY------DTQVGERGVQMSGGQKQRIAIARAI---------IKAPRILLLDE 525
++ Q VG +SGG+ R+ AR + + PR LLLDE
Sbjct: 123 --GEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDE 180
Query: 526 ATSALD-SESERVVQEALDKAV---VGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSH 581
T+ALD + R++ A +G I+ L+ R+AD IA++ DG ++ G+
Sbjct: 181 PTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAA-RHADRIAMLADGAIVAHGAP 239
Query: 582 DELIQAE 588
+++
Sbjct: 240 ADVLTPA 246
|
Length = 272 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 5e-12
Identities = 39/126 (30%), Positives = 64/126 (50%), Gaps = 15/126 (11%)
Query: 1000 GNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYD---- 1055
G I ++++ Y D + ++ IE + TAL+G SG GKST + + R D
Sbjct: 2 GKISVKDLDLFYG---DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPS 58
Query: 1056 -PLKGDVKIDDRDI--RSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGA-----SDEID 1107
++G+V +D +DI + LR+ + +V Q+P F +I +N+AYG D+
Sbjct: 59 VKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKK 118
Query: 1108 ESEIVE 1113
EIVE
Sbjct: 119 LDEIVE 124
|
Length = 250 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 5e-12
Identities = 32/103 (31%), Positives = 57/103 (55%), Gaps = 5/103 (4%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
+E+ + F Y AR + + S + G+ AL+G +G+GKST+ L+ R Y +G +
Sbjct: 2 LEVAGLSFRYGARRAL---DDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQI 58
Query: 1062 KIDDRDIRSYHLRSLRRHIALVSQEPTL-FAGTIRENIAYGAS 1103
+ D+R +L R + +V Q+PTL ++R+N+ Y A+
Sbjct: 59 SVAGHDLRRAPRAALAR-LGVVFQQPTLDLDLSVRQNLRYHAA 100
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 5e-12
Identities = 58/227 (25%), Positives = 115/227 (50%), Gaps = 31/227 (13%)
Query: 380 KDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439
K LT+ G+ AL+G +G+GKST++ +L + P G I ++ ++ +KL K L +Q+
Sbjct: 22 KSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHK-LAAQL 80
Query: 440 G--LVSQEPALF-ATSIKENILFGK---EDASMEEVIEAAKASNAHNFIRQLPQQYDTQV 493
G ++ QE ++ ++ EN+ G+ + +I+ +R +V
Sbjct: 81 GIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIID-------WREMRVRAAMMLLRV 133
Query: 494 G------ERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSAL-DSESERV--VQEALDK 544
G E+ +S KQ + IA+ ++ +++++DE TS+L + E + + + L K
Sbjct: 134 GLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRK 193
Query: 545 AVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETG-----SHDELI 585
G + I+H+L+ IR D V++DG + +G S+D+++
Sbjct: 194 E--GTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSNDDIV 238
|
Length = 510 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 6e-12
Identities = 67/232 (28%), Positives = 108/232 (46%), Gaps = 23/232 (9%)
Query: 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGE 419
+E + V FAY S+ LTI G+ + L+GG+GSGKST+ LL Y P GE
Sbjct: 322 TLELRNVTFAYQDNGFSV--GPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGE 379
Query: 420 IILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAH 479
I+LDG + Q + R V + LF L G E + A +
Sbjct: 380 ILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQ------LLGPEG-------KPANPALVE 426
Query: 480 NFIRQLPQQYDTQVGE---RGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESER 536
++ +L + ++ + +++S GQK+R+A+ A+ + ILLLDE + D R
Sbjct: 427 KWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRR 486
Query: 537 VV-QEALD--KAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVME-TGSHDEL 584
Q L + +G+T I+H +AD + +++GQ+ E TG +
Sbjct: 487 EFYQVLLPLLQE-MGKTIFAISHDDHYFIHADRLLEMRNGQLSELTGEERDA 537
|
Length = 547 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 65.6 bits (161), Expect = 7e-12
Identities = 29/103 (28%), Positives = 54/103 (52%), Gaps = 6/103 (5%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
IE++N+H ++ + +G + ++ G+ ++G SGSGKST++ I +P G +
Sbjct: 1 IEIKNLHKSFGDFH---VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTI 57
Query: 1062 KIDDRDI--RSYHLRSLRRHIALVSQEPTLFAG-TIRENIAYG 1101
ID + ++ LR+ + +V Q+ LF T+ ENI
Sbjct: 58 IIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLA 100
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 7e-12
Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 7/88 (7%)
Query: 1021 EGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLK-----GDVKIDDRDI--RSYHL 1073
+G S+ I TAL+G SG GKST + + R D +K G V++D +DI +L
Sbjct: 62 KGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNL 121
Query: 1074 RSLRRHIALVSQEPTLFAGTIRENIAYG 1101
LR+ + +V Q P F +IRENI+YG
Sbjct: 122 VELRKRVGMVFQSPNPFPKSIRENISYG 149
|
Length = 305 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 9e-12
Identities = 51/225 (22%), Positives = 102/225 (45%), Gaps = 14/225 (6%)
Query: 384 LTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVS 443
L+ G+ + L+G +G+GK+T++ + P G + + G S K +G V
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKG-----WRHIGYVP 55
Query: 444 QEPAL---FATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGV-Q 499
Q F S+ ++ G+ + ++ L + T++ +R V +
Sbjct: 56 QRHEFAWDFPISVAHTVMSGR--TGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGE 113
Query: 500 MSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDK-AVVGRTTIIIAHRL 558
+SGGQ+QR+ +ARA+ P +LLLDE + LD ++ ++ E + A G ++ H L
Sbjct: 114 LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDL 173
Query: 559 STIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQTTTP 603
+ V+ +G+V+ G+ +L + + + ++P
Sbjct: 174 AQAMATCDRVVLLNGRVIADGTPQQLQDPA--PWMTTFGVSDSSP 216
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.6 bits (161), Expect = 1e-11
Identities = 30/102 (29%), Positives = 55/102 (53%), Gaps = 5/102 (4%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
IE++N+ ++ D + +G S+ +E G+ ++G SGSGKST++ + +P G +
Sbjct: 3 IEIKNLSKSFG---DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSI 59
Query: 1062 KIDDRDI-RSYHLRSLRRHIALVSQEPTLFAG-TIRENIAYG 1101
+D D+ + LRR + +V Q+ LF T+ EN+
Sbjct: 60 TVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLA 101
|
Length = 240 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.2 bits (161), Expect = 1e-11
Identities = 45/137 (32%), Positives = 77/137 (56%), Gaps = 18/137 (13%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
I++ N+ F Y + I EG S++I K TA++G SG GKST + + R + L+ +V
Sbjct: 8 IKVNNLSFYYDTQK---ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE-LESEV 63
Query: 1062 KIDDR------DI--RSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGAS-----DEIDE 1108
+++ R +I R +L LRR +++V +P LF ++ +N+AYG +++
Sbjct: 64 RVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEI 123
Query: 1109 SEIVEAA-KAANAHDFI 1124
+IVE+A K A+ D I
Sbjct: 124 DDIVESALKDADLWDEI 140
|
Length = 261 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.3 bits (159), Expect = 1e-11
Identities = 63/230 (27%), Positives = 110/230 (47%), Gaps = 23/230 (10%)
Query: 369 AYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSID 428
AY R + +D LT+ +G+ V L+G +G+GK+T ++ G II+D I
Sbjct: 12 AYKGRR---VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDIS 68
Query: 429 KLQL-KWLRSQMGLVSQEPALFAT-SIKEN---ILFGKEDASMEEVIEAAKASNAHNFIR 483
L L R +G + QE ++F S+ +N +L ++D S E+ + A I
Sbjct: 69 LLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIE 128
Query: 484 QLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSES----ERVVQ 539
L G +SGG+++R+ IARA+ P+ +LLDE + +D S +R+++
Sbjct: 129 HLRDSM-------GQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIE 181
Query: 540 EALDKAVVGRTTIIIAHRL-STIRNADVIAVVQDGQVMETGSHDELIQAE 588
D G +I H + T+ + +V G ++ G+ E++Q E
Sbjct: 182 HLRDS---GLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQDE 228
|
Length = 241 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 2e-11
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 6/103 (5%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
I +NV AYP + S I G+ L G SG+GKST++ LI P +G +
Sbjct: 2 IRFENVSKAYPGGRE--ALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKI 59
Query: 1062 KIDDRDI---RSYHLRSLRRHIALVSQEPTLFAG-TIRENIAY 1100
++ D+ + + LRR I +V Q+ L T+ EN+A
Sbjct: 60 LVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVAL 102
|
Length = 223 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 2e-11
Identities = 51/142 (35%), Positives = 69/142 (48%), Gaps = 24/142 (16%)
Query: 993 HQPERITGN--IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLI 1050
++I+ N I LQNV +Y V + I GK TAL+G SG GKST++ +
Sbjct: 3 KTNKKISKNIIISLQNVTISYGTFEAV---KNVFCDIPRGKVTALIGPSGCGKSTVLRSL 59
Query: 1051 ERFYD-----PLKGDVKIDDRDIRSYHLR----SLRRHIALVSQEPTLFAGTIRENIAYG 1101
R D LKG V D D+ Y R +RR I +V Q+P F +I ENIA+G
Sbjct: 60 NRMNDLIEGCSLKGRVLFDGTDL--YDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFG 117
Query: 1102 AS--------DEIDESEIVEAA 1115
A DE+ E + +AA
Sbjct: 118 ARINGYTGDMDELVERSLRKAA 139
|
Length = 269 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 2e-11
Identities = 54/229 (23%), Positives = 100/229 (43%), Gaps = 23/229 (10%)
Query: 380 KDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGV------SIDKLQLK 433
KD + AG+ V + G +G+G+S ++ + P G I+L+G S + +
Sbjct: 275 KDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRL 334
Query: 434 WL------RSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQ 487
L R GLV S+ EN++ G+ D F R+L +
Sbjct: 335 GLAYVPEDRHGHGLVLDL------SLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIE 388
Query: 488 QYDTQVGERGV---QMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDK 544
++D + +SGG +Q++ +AR + + P +L+ + T LD + + E L +
Sbjct: 389 EFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLE 448
Query: 545 AVVGRTTII-IAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQAESGL 591
++ I+ L I +D IAV+ +G+++ +E + E GL
Sbjct: 449 LRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPEEATREEIGL 497
|
Length = 501 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 2e-11
Identities = 59/285 (20%), Positives = 117/285 (41%), Gaps = 25/285 (8%)
Query: 372 SRPESII--FKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDK 429
R E I +D IP G+ V +G +G+GKST + +L P G++ ++G +
Sbjct: 31 HRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFR 90
Query: 430 LQLKWLRS---QMGLVSQ----EPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFI 482
+ ++LRS MG Q PAL + + + I E+ + A
Sbjct: 91 RREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLI---------YEIPDDEFAERLDFLT 141
Query: 483 RQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEAL 542
L + + ++S GQ+ R +A A++ P++L LDE T LD ++ ++E L
Sbjct: 142 EIL--DLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFL 199
Query: 543 -DKAVVGRTTIIIA-HRLSTI-RNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQ 599
+ + T+++ H I D + ++ GQ++ G+ +L + ++
Sbjct: 200 KEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGPYKE--FSVE 257
Query: 600 TTTPDDNNNATMHSLASKSSNMDMNSTSSRRLSIVSLSSSANSFA 644
+ + + +++ + SR S ++ F
Sbjct: 258 LKQAKSLSQLALLGDVTIEEGLNIKNDVSREESADIIAKLLAEFE 302
|
Length = 325 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 2e-11
Identities = 63/229 (27%), Positives = 104/229 (45%), Gaps = 43/229 (18%)
Query: 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALL--QRFYAPLGGEIILDGVSIDKLQLK-W 434
I K LT+ G+ A++G +GSGKST+ + Y G I+ G D L+L+
Sbjct: 15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKG--QDLLELEPD 72
Query: 435 LRSQMG--LVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAH------------N 480
R++ G L Q P E I S E + +A NA +
Sbjct: 73 ERARAGLFLAFQYP--------EEI----PGVSNLEFLRSAL--NARRSARGEEPLDLLD 118
Query: 481 FIRQLPQ-----QYDTQVGERGVQ--MSGGQKQRIAIARAIIKAPRILLLDEATSALDSE 533
F++ L D + R V SGG+K+R I + + P++ +LDE S LD +
Sbjct: 119 FLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDID 178
Query: 534 SERVVQEALDK-AVVGRTTIIIAH--RLSTIRNADVIAVVQDGQVMETG 579
+ ++V E +++ R+ +II H RL D + V+ DG+++++G
Sbjct: 179 ALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSG 227
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 2e-11
Identities = 64/204 (31%), Positives = 107/204 (52%), Gaps = 21/204 (10%)
Query: 383 CLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ---M 439
L + G+ +ALVG +G+GKST++ +L Y G I+ G + K SQ +
Sbjct: 24 ALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPK--SSQEAGI 81
Query: 440 GLVSQEPALFAT-SIKENILFGKEDASMEEVIEAAKA-SNAHNFIRQLPQQYDTQ--VGE 495
G++ QE L +I ENI G+E + I+ K + A + +L ++ + VGE
Sbjct: 82 GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGE 141
Query: 496 RGVQMSGGQKQRIAIARAIIKAPRILLLDEATSAL-DSESE---RVVQEALDKAVVGRTT 551
+S G++Q + IA+ + +++++DE T AL D+E+E RV++E + GR
Sbjct: 142 ----LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQ---GRGI 194
Query: 552 IIIAHRLSTIRN-ADVIAVVQDGQ 574
+ I+HRL I D + V +DGQ
Sbjct: 195 VYISHRLKEIFEICDDVTVFRDGQ 218
|
Length = 501 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 64.4 bits (158), Expect = 3e-11
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 1002 IELQNVHFAYPARPD-VMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGD 1060
+E++N+ ++P V + S I+ G++ LVG+SGSGKST+ I P G
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61
Query: 1061 VKIDDRDIRSY---HLRSLRRHIALVSQEP 1087
+ D +D+ + R+ I +V Q+P
Sbjct: 62 IIFDGKDLLKLSRRLRKIRRKEIQMVFQDP 91
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 3e-11
Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 11/122 (9%)
Query: 1011 YPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDR--DI 1068
YP P+V+ +G + E G+ AL+G +G+GKST++ + P G V ID D
Sbjct: 1 YPGGPEVL--KGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDY 58
Query: 1069 RSYHLRSLRRHIALVSQEP--TLFAGTIRENIAY-----GASDEIDESEIVEAAKAANAH 1121
L R+ + LV Q+P LFA + +++A+ G S+ E + EA A A
Sbjct: 59 SRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGAS 118
Query: 1122 DF 1123
Sbjct: 119 GL 120
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 3e-11
Identities = 36/102 (35%), Positives = 50/102 (49%), Gaps = 6/102 (5%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
IE NV AYP V S+ I G+ L G SG+GK+T++ L+ P +G V
Sbjct: 2 IEFHNVSKAYP--GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQV 59
Query: 1062 KIDDRDIRSYHLR---SLRRHIALVSQEPTLF-AGTIRENIA 1099
+I D+ R LRR I +V Q+ L T+ EN+A
Sbjct: 60 RIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVA 101
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 67.1 bits (165), Expect = 3e-11
Identities = 49/202 (24%), Positives = 90/202 (44%), Gaps = 54/202 (26%)
Query: 369 AYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIIL-DGVSI 427
P P+ I KD L+ G + ++G +G+GKST++ ++ GE G+ +
Sbjct: 15 VVP--PKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKV 72
Query: 428 DKLQLKWLRSQMGLVSQEPALFAT-SIKENI-------------------LFGKEDASME 467
G + QEP L +++EN+ + + DA +
Sbjct: 73 ------------GYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFD 120
Query: 468 EVI-EAAK------ASNAHNFIRQLPQ--------QYDTQVGERGVQMSGGQKQRIAIAR 512
+ E + A++A + QL +D +V ++SGG+++R+A+ R
Sbjct: 121 ALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVT----KLSGGERRRVALCR 176
Query: 513 AIIKAPRILLLDEATSALDSES 534
+++ P +LLLDE T+ LD+ES
Sbjct: 177 LLLEKPDMLLLDEPTNHLDAES 198
|
Length = 556 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 4e-11
Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 13/132 (9%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
+ L +V F+Y P F + + AG+ A++G SG+GKST++ LI F P G++
Sbjct: 2 LALDDVRFSYGHLP----MR-FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEI 56
Query: 1062 KIDDRDIRSYHLRSLRRHIALVSQEPTLFAG-TIRENIAYGAS-----DEIDESEIVEAA 1115
I+ D R ++++ QE LFA T+ +NI G S + ++ AA
Sbjct: 57 LINGVDHT--ASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAA 114
Query: 1116 KAANAHDFIAGL 1127
F+ L
Sbjct: 115 AQVGLAGFLKRL 126
|
Length = 231 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 4e-11
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
+E++N+ YP + ++ I G+ A++G SG+GKST++ I R +P G +
Sbjct: 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSI 59
Query: 1062 KIDDRDI---RSYHLRSLRRHIALVSQE 1086
++ DI R LR LRR I ++ Q
Sbjct: 60 LLEGTDITKLRGKKLRKLRRRIGMIFQH 87
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 4e-11
Identities = 43/128 (33%), Positives = 64/128 (50%), Gaps = 15/128 (11%)
Query: 1002 IELQNVHFAY-PARPDVMIFE-----GFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYD 1055
I+++N+ Y P FE +I+IE G+ L+G +GSGKST+I +
Sbjct: 3 IKIENLTHIYMEGTP----FEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK 58
Query: 1056 PLKGDVKIDDRDI--RSYHLRSLRRHIALVSQEP--TLFAGTIRENIAYGASD-EIDESE 1110
P G + ID DI + L +R+ + LV Q P LF TI ++IA+G + + E E
Sbjct: 59 PTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEE 118
Query: 1111 IVEAAKAA 1118
I K A
Sbjct: 119 IENRVKRA 126
|
Length = 287 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.3 bits (156), Expect = 5e-11
Identities = 44/126 (34%), Positives = 65/126 (51%), Gaps = 15/126 (11%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYD---PLK 1058
I+++++ F Y + EG S+ I K TA++G SG GKST I + R + P+K
Sbjct: 8 IKVKDLSFYYNTSKAI---EGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVK 64
Query: 1059 --GDVKIDDRDIRS--YHLRSLRRHIALVSQEPTLFAGTIRENIAYGA-----SDEIDES 1109
G V ++I ++ LRR I +V Q P F +I EN+AYG + D
Sbjct: 65 VEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLD 124
Query: 1110 EIVEAA 1115
EIVE+A
Sbjct: 125 EIVESA 130
|
Length = 259 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.0 bits (157), Expect = 5e-11
Identities = 30/122 (24%), Positives = 60/122 (49%), Gaps = 8/122 (6%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
+E +N+ R + + S+ + G+ A++G +G+GKST++ + P G+V
Sbjct: 3 LEARNLSVRLGGRT---LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEV 59
Query: 1062 KIDDRDIRSYHLRSLRRHIALVSQEPTL-FAGTIRENIAYGAS----DEIDESEIVEAAK 1116
+++ R + + L R A++ Q +L F T+ E +A G + ++ +V AA
Sbjct: 60 RLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAAL 119
Query: 1117 AA 1118
A
Sbjct: 120 AQ 121
|
Length = 258 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 6e-11
Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 6/101 (5%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
IE++NV + + + S+ I +G+ AL+G SGSGK+T++ LI P G +
Sbjct: 3 IEVRNVSKRFGDFVAL---DDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTI 59
Query: 1062 KIDDRDIRSYHLRSLRRHIALVSQEPTLFAG-TIRENIAYG 1101
D ++ R++ V Q LF T+ +N+A+G
Sbjct: 60 LFGGEDATDVPVQ--ERNVGFVFQHYALFRHMTVFDNVAFG 98
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 6e-11
Identities = 57/221 (25%), Positives = 102/221 (46%), Gaps = 20/221 (9%)
Query: 379 FKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438
+D T+P G ALVG +GSGKST+ L F G+I + G + K L +
Sbjct: 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAY 82
Query: 439 MGLVSQEPALFATSIKENILFGK---------EDASMEEVIEAAKASNAHNFIRQLPQQY 489
+ + F +++ ++ G+ +++ AA A R
Sbjct: 83 VPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRH----- 137
Query: 490 DTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESE-RVVQEALDKAVVG 548
Q+GE +SGGQK+R+ +ARAI + +++LLDE + +D ++E R++ + G
Sbjct: 138 -RQIGE----LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEG 192
Query: 549 RTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAES 589
+T ++ H L ++ V+ G V+ +G + AE+
Sbjct: 193 KTMLVSTHNLGSVTEFCDYTVMVKGTVLASGPTETTFTAEN 233
|
Length = 272 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 6e-11
Identities = 51/226 (22%), Positives = 99/226 (43%), Gaps = 37/226 (16%)
Query: 381 DFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLK-WLRSQM 439
D ++ G+ L+G +G+GK+T++ ++ P GE++ DG D +L ++
Sbjct: 23 DLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDG-DTDLTKLPEHRIARA 81
Query: 440 GLVS--QEPALF-ATSIKEN-------------ILFGK----EDASMEEVIEAAKASNAH 479
G+ Q+P +F +++EN LF + E ++E++
Sbjct: 82 GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLA-------- 133
Query: 480 NFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQ 539
I ++ +S GQKQ + I + + P++LLLDE + +
Sbjct: 134 -TIGLGDERDRL-----AALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTA 187
Query: 540 EALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584
E L + +++ H + +R AD + V+ +G V+ GS DE+
Sbjct: 188 ELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEV 233
|
Length = 249 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 62.5 bits (153), Expect = 7e-11
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 25/113 (22%)
Query: 1002 IELQNVHFAYPARPDV--MIFEGFSIKIEAGKSTALVGQSGSGKST----IIGLIERFYD 1055
I +++ F + + + ++++ G+ A+VG GSGKS+ ++G +E+
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEK--- 57
Query: 1056 PLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDE 1108
L G V S+ IA VSQEP + GTIRENI +G DE
Sbjct: 58 -LSGSV-------------SVPGSIAYVSQEPWIQNGTIRENILFGK--PFDE 94
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 7e-11
Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 5/103 (4%)
Query: 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGD 1060
+I + NV + A + S+ I++G+ AL+G SG+GKST++ +I P G
Sbjct: 2 SIRINNVKKRFGAFG---ALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGR 58
Query: 1061 VKIDDRDIR-SYHLRSLRRHIALVSQEPTLFAG-TIRENIAYG 1101
++++ R + +L R + V Q LF T+ +NIA+G
Sbjct: 59 IRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFG 101
|
Length = 345 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 7e-11
Identities = 37/107 (34%), Positives = 53/107 (49%), Gaps = 18/107 (16%)
Query: 1022 GFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKG----------DVKIDDRDIRSY 1071
G ++ E K TAL+G SGSGKST + + R D + + I+ ++I Y
Sbjct: 38 GIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVY 97
Query: 1072 HLRSLRRHIALVSQEPTLFAGTIRENIAY-----GASDEIDESEIVE 1113
+R +HI +V Q P FA +I ENI + G D+ EIVE
Sbjct: 98 EMR---KHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVE 141
|
Length = 267 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 9e-11
Identities = 60/222 (27%), Positives = 105/222 (47%), Gaps = 27/222 (12%)
Query: 384 LTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVS 443
L + + V+L+G +G+GK+TV L FY P GG I+L G I+ L ++MG+V
Sbjct: 26 LEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLP-GHQIARMGVVR 84
Query: 444 --QEPALFA--TSIKENILFGKEDASMEEVI------------EAAKASNAHNFIRQ--L 485
Q LF T I EN+L + + E+ A ++ + L
Sbjct: 85 TFQHVRLFREMTVI-ENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGL 143
Query: 486 PQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALD-- 543
+ + Q G ++ GQ++R+ IAR ++ P IL+LDE + L+ + + + E +
Sbjct: 144 LEHANRQAG----NLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAEL 199
Query: 544 KAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584
+ T ++I H + + +D I VV G + G+ +E+
Sbjct: 200 RNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEI 241
|
Length = 255 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 1e-10
Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 5/83 (6%)
Query: 1024 SIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYH---LRSLRRH- 1079
S+ + G+ ++G SGSGKST++ I R +P G V ID +DI + LR LRR
Sbjct: 44 SLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKK 103
Query: 1080 IALVSQEPTLFAG-TIRENIAYG 1101
I++V Q L T+ EN+A+G
Sbjct: 104 ISMVFQSFALLPHRTVLENVAFG 126
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 1e-10
Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 5/83 (6%)
Query: 1024 SIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYH---LRSLRRH- 1079
S+ +E G+ ++G SGSGKST++ L+ R +P +G++ +D +DI LR LRR
Sbjct: 48 SLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKK 107
Query: 1080 IALVSQEPTLFAG-TIRENIAYG 1101
I++V Q L T+ EN+A+G
Sbjct: 108 ISMVFQSFALLPHRTVLENVAFG 130
|
Length = 386 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 1e-10
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 13/122 (10%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
+EL+NV + +V + ++ I G+ L+G SG GK+T + +I +P G +
Sbjct: 1 VELENVTKRFG---NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRI 57
Query: 1062 KIDDRDIRSYHLRSLRRHIALVSQEPTLFAG-TIRENIAYG------ASDEIDESEIVEA 1114
I RD+ L R IA+V Q L+ T+ +NIA+G DEIDE + E
Sbjct: 58 YIGGRDVTD--LPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDE-RVREV 114
Query: 1115 AK 1116
A+
Sbjct: 115 AE 116
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 1e-10
Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 7/99 (7%)
Query: 1004 LQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKI 1063
+ ++ +Y +P E S+ I +G+ ++G SG GK+T++ LI F P +G +++
Sbjct: 6 VSHLSLSYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQL 64
Query: 1064 DDRDIRSYHLRSLRRHIALVSQEPTLFAG-TIRENIAYG 1101
+ R I R +V Q L + +N+A+G
Sbjct: 65 NGRRIEG---PGAER--GVVFQNEALLPWLNVIDNVAFG 98
|
Length = 259 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 1e-10
Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 15/133 (11%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
+E +++ ++YP +G + K E G+ AL+G +G+GKST+ P G+V
Sbjct: 2 LETRDLKYSYP--DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEV 59
Query: 1062 KIDDRDIRSYHLRSL---RRHIALVSQEP--TLFAGTIRENIAYG------ASDEIDESE 1110
I I Y +SL R+ + +V Q P LFA T+ E++A+G + +E+ E
Sbjct: 60 LIKGEPI-KYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEV-EKR 117
Query: 1111 IVEAAKAANAHDF 1123
+ EA KA F
Sbjct: 118 VKEALKAVGMEGF 130
|
Length = 275 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 2e-10
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 11/88 (12%)
Query: 1019 IFEGFSIKIEAGKSTALVGQSGSGKST---IIGLIERFYDPLKGDVKIDDRDIRSYHL-- 1073
I + ++ IE GK A++G+SGSGKST IIGL+E+F G V ++ ++ +
Sbjct: 13 ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFD---SGQVYLNGQETPPLNSKK 69
Query: 1074 -RSLRR-HIALVSQEPTLFAG-TIRENI 1098
RR + + Q L T+ EN+
Sbjct: 70 ASKFRREKLGYLFQNFALIENETVEENL 97
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 2e-10
Identities = 32/107 (29%), Positives = 57/107 (53%), Gaps = 10/107 (9%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYD--P--- 1056
I+++N++F Y + ++ I + TA +G SG GKST++ R Y+ P
Sbjct: 14 IQVRNLNFYYG---KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQR 70
Query: 1057 LKGDVKIDDRDI--RSYHLRSLRRHIALVSQEPTLFAGTIRENIAYG 1101
+G++ +D +I + LR + +V Q+PT F +I +NIA+G
Sbjct: 71 AEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFG 117
|
Length = 260 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.0 bits (150), Expect = 2e-10
Identities = 30/81 (37%), Positives = 52/81 (64%), Gaps = 3/81 (3%)
Query: 1024 SIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPL---KGDVKIDDRDIRSYHLRSLRRHI 1080
+++IE K TAL+G SG GKST + R D + G V+I+ +D+++ + +LR+++
Sbjct: 22 NMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNV 81
Query: 1081 ALVSQEPTLFAGTIRENIAYG 1101
+V Q+P +F +I ENI+Y
Sbjct: 82 GMVFQQPNVFVKSIYENISYA 102
|
Length = 246 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 2e-10
Identities = 36/111 (32%), Positives = 50/111 (45%), Gaps = 17/111 (15%)
Query: 1022 GFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYD-----PLKGDVKIDDRDIRSYHLR-- 1074
+I I + TAL+G SG GKST++ R D + GD+ + +I
Sbjct: 24 DITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83
Query: 1075 SLRRHIALVSQEPTLFAGTIRENIAYG----------ASDEIDESEIVEAA 1115
+LRR I +V Q P F +I EN+AYG D I E + AA
Sbjct: 84 ALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAA 134
|
Length = 253 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 3e-10
Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 7/85 (8%)
Query: 1024 SIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPL-----KGDVKIDDRDIRSYHLR--SL 1076
S++ E + TAL+G SG GKST + + R D + +G++ +D +I H+ L
Sbjct: 26 SLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVEL 85
Query: 1077 RRHIALVSQEPTLFAGTIRENIAYG 1101
RR + +V Q+P F +I EN+AYG
Sbjct: 86 RRRVGMVFQKPNPFPKSIFENVAYG 110
|
Length = 253 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 3e-10
Identities = 33/123 (26%), Positives = 58/123 (47%), Gaps = 14/123 (11%)
Query: 988 EDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTII 1047
+ +E++N++ Y D S++I + TA +G SG GKST++
Sbjct: 12 PLLDVLNLSDEQTALEVRNLNLFYG---DKQALFDISMRIPKNRVTAFIGPSGCGKSTLL 68
Query: 1048 GLIERFYDPL-----KGDVKIDDRDIRSYHLR----SLRRHIALVSQEPTLFAGTIRENI 1098
R D + +G++++D ++I Y + LRR + +V Q P F +I EN+
Sbjct: 69 RCFNRMNDLVDNCRIEGEIRLDGQNI--YDKKVDVAELRRRVGMVFQRPNPFPKSIYENV 126
Query: 1099 AYG 1101
YG
Sbjct: 127 VYG 129
|
Length = 272 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 3e-10
Identities = 46/149 (30%), Positives = 79/149 (53%), Gaps = 8/149 (5%)
Query: 384 LTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQL-KWLRSQMGLV 442
L I G+ V L+G +G+GK+T++ L G I+ DG I Q K +R + +V
Sbjct: 26 LHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIV 85
Query: 443 SQEPALFA-TSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMS 501
+ +F+ +++EN+ G A ++ E K P+ ++ ++ +R MS
Sbjct: 86 PEGRRVFSRMTVEENLAMGGFFAERDQFQERIK-----WVYELFPRLHERRI-QRAGTMS 139
Query: 502 GGQKQRIAIARAIIKAPRILLLDEATSAL 530
GG++Q +AI RA++ PR+LLLDE + L
Sbjct: 140 GGEQQMLAIGRALMSQPRLLLLDEPSLGL 168
|
Length = 237 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 4e-10
Identities = 26/114 (22%), Positives = 56/114 (49%), Gaps = 7/114 (6%)
Query: 1003 ELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVK 1062
++N+ F+Y +++ + S+ + AG+ AL G++G+GK+T+ ++ G +
Sbjct: 1 RIENISFSYKKGTEIL--DDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSIL 58
Query: 1063 IDDRDIRSYHLRSLRRHIALVSQEPT--LFAGTIRENIAYGASDEIDESEIVEA 1114
++ + I + R+ I V Q+ LF ++RE + G + +E E
Sbjct: 59 LNGKPI---KAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAET 109
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 4e-10
Identities = 61/224 (27%), Positives = 101/224 (45%), Gaps = 31/224 (13%)
Query: 378 IFKDFCLTIPAGKTVALVGGSGSGKST---VIALLQRFYAPLGGEIILDGVSIDKLQLKW 434
I K L+I G+ A++G +GSGKST VIA Y L G+I+ G SI L+ +
Sbjct: 22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAG-HPAYKILEGDILFKGESILDLEPE- 79
Query: 435 LRSQMGL------------VSQEPAL---FATSIKENILFGKEDASMEEVIEAAKASNAH 479
R+ +G+ VS L + + K L + E+I +
Sbjct: 80 ERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEII-----NEKL 134
Query: 480 NFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQ 539
+ P V E SGG+K+R I + + + +LDE S LD ++ +++
Sbjct: 135 KLVGMDPSFLSRNVNE---GFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIA 191
Query: 540 EALDK-AVVGRTTIIIAH--RLSTIRNADVIAVVQDGQVMETGS 580
E ++K + I+I H RL D + V+Q+G++++TG
Sbjct: 192 EGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGD 235
|
Length = 252 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 5e-10
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 14/109 (12%)
Query: 1020 FEGFSIKIE---AGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDR---DIR-SYH 1072
F++KI+ + T + G SG+GKST++ I P G + ++ D R +
Sbjct: 10 LPDFTLKIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKIN 69
Query: 1073 LRSLRRHIALVSQEPTLFAG-TIRENIAYG------ASDEIDESEIVEA 1114
L +R I LV Q+ LF +REN+A+G D I E+++
Sbjct: 70 LPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDL 118
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 60.6 bits (148), Expect = 5e-10
Identities = 22/100 (22%), Positives = 48/100 (48%), Gaps = 3/100 (3%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
++++N+ Y + + S+ + G+ L+G +G+GK+T + ++ P G
Sbjct: 1 LQIRNLTKTYKKGTKPAV-DDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTA 59
Query: 1062 KIDDRDIRSYHLRSLRRHIALVSQEPTLFAG-TIRENIAY 1100
I+ IR ++ R+ + Q LF T+RE++ +
Sbjct: 60 YINGYSIR-TDRKAARQSLGYCPQFDALFDELTVREHLRF 98
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 63.4 bits (154), Expect = 5e-10
Identities = 63/237 (26%), Positives = 115/237 (48%), Gaps = 18/237 (7%)
Query: 333 RIMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTV 392
+ M++ RV K ++ +G ++ +LG + E I G+ +
Sbjct: 41 KFMDVCYRV-KFENMKNKGSNIKRILGHKPKISDE--TRQIQERTILNGVTGMASPGEIL 97
Query: 393 ALVGGSGSGKSTVI-ALLQRFYAP-LGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFA 450
A++G SGSGKST++ AL R G I+ + K LK + G V+Q+ L+
Sbjct: 98 AVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILK----RTGFVTQDDILYP 153
Query: 451 -TSIKENILFGKEDASMEEVIEAAKASNAHNFIRQL--PQQYDTQVGE---RGVQMSGGQ 504
+++E ++F + + + K A + I +L + +T +G RG+ SGG+
Sbjct: 154 HLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGI--SGGE 211
Query: 505 KQRIAIARAIIKAPRILLLDEATSALDSESE-RVVQEALDKAVVGRTTIIIAHRLST 560
++R++IA ++ P +L+LDE TS LD+ + R+V A G+T + H+ S+
Sbjct: 212 RKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSS 268
|
Length = 659 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 60.1 bits (147), Expect = 6e-10
Identities = 32/104 (30%), Positives = 53/104 (50%), Gaps = 7/104 (6%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
+E++N++ Y I G S+ + G+ AL+G++G+GK+T++ I P G +
Sbjct: 1 LEVENLNAGYG---KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSI 57
Query: 1062 KIDDRDIRSY--HLRSLRRHIALVSQEPTLFAG-TIRENIAYGA 1102
+ D RDI H R R I V + +F T+ EN+ GA
Sbjct: 58 RFDGRDITGLPPHER-ARAGIGYVPEGRRIFPELTVEENLLLGA 100
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (147), Expect = 6e-10
Identities = 34/107 (31%), Positives = 58/107 (54%), Gaps = 10/107 (9%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLK--- 1058
I ++VH +Y + G S+ E + TAL+G SG GKST + + R D ++
Sbjct: 5 ISAKDVHLSYG---NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIK 61
Query: 1059 --GDVKIDDRDIRS--YHLRSLRRHIALVSQEPTLFAGTIRENIAYG 1101
G++K + ++I L LR+ + +V Q+PT F ++ +N+AYG
Sbjct: 62 ITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYG 108
|
Length = 251 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 6e-10
Identities = 33/99 (33%), Positives = 56/99 (56%), Gaps = 4/99 (4%)
Query: 1004 LQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKI 1063
L+NV F P R + S+ AGK T L+G +GSGKST++ ++ R P +G++ +
Sbjct: 14 LRNVSFRVPGR---TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILL 70
Query: 1064 DDRDIRSYHLRSLRRHIALVSQE-PTLFAGTIRENIAYG 1101
D + + S+ ++ R +A + Q+ P T+RE +A G
Sbjct: 71 DAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIG 109
|
Length = 265 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 8e-10
Identities = 25/101 (24%), Positives = 57/101 (56%), Gaps = 4/101 (3%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
I ++NV +Y + + + S+ I G T+++G +G+GKST++ ++ R G++
Sbjct: 2 ITIENVSKSYGTKV---VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEI 58
Query: 1062 KIDDRDIRSYHLRSLRRHIALVSQEPTLFAG-TIRENIAYG 1101
ID ++ S + L + ++++ QE + + T+R+ + +G
Sbjct: 59 TIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFG 99
|
Length = 252 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 58.2 bits (140), Expect = 8e-10
Identities = 36/187 (19%), Positives = 60/187 (32%), Gaps = 59/187 (31%)
Query: 389 GKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPAL 448
G+ + +VG GSGK+T+ L R P GG +I ++ +
Sbjct: 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLII-------- 53
Query: 449 FATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRI 508
VG + SG + R+
Sbjct: 54 --------------------------------------------VGGKKASGSGELRLRL 69
Query: 509 AIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-------VGRTTIIIAHRLSTI 561
A+A A P +L+LDE TS LD+E E ++ + + T I+ + +
Sbjct: 70 ALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDL 129
Query: 562 RNADVIA 568
A +
Sbjct: 130 GPALLRR 136
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 61.2 bits (148), Expect = 1e-09
Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 8/106 (7%)
Query: 999 TGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDP-- 1056
G I + ++ AY A + + S++IEAG+ AL+G+SG GK+T++ I F
Sbjct: 3 CGGIRIDHLRVAYGAN---TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAG 59
Query: 1057 LKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAG-TIRENIAYG 1101
L G + I DRD+ H +R +AL+ Q LF + +N+A+G
Sbjct: 60 LTGRIAIADRDLT--HAPPHKRGLALLFQNYALFPHLKVEDNVAFG 103
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 1e-09
Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 16/112 (14%)
Query: 1002 IELQNVHFAYPAR-PDVMIFEGFSIK-----IEAGKSTALVGQSGSGKSTIIGLIERFYD 1055
I Q V Y + P FE ++ I +G A++G +GSGKST++ +
Sbjct: 3 ITFQKVEHRYQYKTP----FERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ 58
Query: 1056 PLKGDVKIDDRDI----RSYHLRSLRRHIALVSQ--EPTLFAGTIRENIAYG 1101
P G V I +R I ++ L+ LR+ + +V Q E LF T+ ++I +G
Sbjct: 59 PTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFG 110
|
Length = 290 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 1e-09
Identities = 57/182 (31%), Positives = 90/182 (49%), Gaps = 30/182 (16%)
Query: 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPL---- 416
++ + V+ +Y + + I K L + G+ + LVG SG GKST L R A L
Sbjct: 4 LKLQAVRKSYDGKTQVI--KGIDLDVADGEFIVLVGPSGCGKST----LLRMVAGLERIT 57
Query: 417 GGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFA-TSIKENILFGKEDASM------EEV 469
GEI + G +++L+ M V Q AL+ S++EN+ +G + M E V
Sbjct: 58 SGEIWIGGRVVNELEPADRDIAM--VFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERV 115
Query: 470 IEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSA 529
EAA+ + + P+ ++SGGQ+QR+A+ RAI++ P + L DE S
Sbjct: 116 AEAARILELEPLLDRKPR-----------ELSGGQRQRVAMGRAIVREPAVFLFDEPLSN 164
Query: 530 LD 531
LD
Sbjct: 165 LD 166
|
Length = 356 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 1e-09
Identities = 47/225 (20%), Positives = 98/225 (43%), Gaps = 15/225 (6%)
Query: 385 TIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQ 444
G+ V +G +G+GKST + ++ + P G + + G + + + R+ L
Sbjct: 24 EAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEH 83
Query: 445 EPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQL---PQQYDTQVGERGVQMS 501
P ++E + F A + + I + P+Q+ ++G Q+S
Sbjct: 84 NPLYLDMYVREYLQF---IAGIYGMKGQLLKQRVEEMIELVGLRPEQH-KKIG----QLS 135
Query: 502 GGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTI 561
G +QR+ +A+A+I P++L+LDE T+ LD ++ + +T I+ H + +
Sbjct: 136 KGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEV 195
Query: 562 RN-ADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQTTTPDD 605
D + ++ G+++ DEL A ++ ++ D
Sbjct: 196 EAICDRVIIINKGKIVADKKLDELSAANK---KQVIEVEFEEQID 237
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 1e-09
Identities = 59/223 (26%), Positives = 96/223 (43%), Gaps = 63/223 (28%)
Query: 375 ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIIL-DGVSIDKL--- 430
+ II L + G + L+G +G+GKST+I LL AP+ GEI L G+ +
Sbjct: 324 DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQH 383
Query: 431 QLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYD 490
QL++LR A S + R PQ+ +
Sbjct: 384 QLEFLR------------------------------------ADESPLQHLARLAPQELE 407
Query: 491 TQ--------------VGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESER 536
+ V E + SGG+K R+ +A + + P +LLLDE T+ LD + +
Sbjct: 408 QKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQ 467
Query: 537 VVQEAL---DKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQV 575
+ EAL + A+V +++H +R+ D + +V DG+V
Sbjct: 468 ALTEALIDFEGALV-----VVSHDRHLLRSTTDDLYLVHDGKV 505
|
Length = 638 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 2e-09
Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 3/102 (2%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
I +NV F Y + + S I G+ T++VG +GSGKSTI L+ G++
Sbjct: 8 IVFKNVSFQYQS-DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEI 66
Query: 1062 KIDDRDIRSYHLRSLRRHIALVSQEP-TLFAGTI-RENIAYG 1101
+++ I + LR+HI +V Q P F G+I + ++A+G
Sbjct: 67 FYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFG 108
|
Length = 269 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 2e-09
Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 13/107 (12%)
Query: 1022 GFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPL-----KGDVKIDDRDI--RSYHLR 1074
+ I TA +G SG GKST + + R D + G + +D DI +
Sbjct: 37 DVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVV 96
Query: 1075 SLRRHIALVSQEPTLFAGTIRENIAYG------ASDEIDESEIVEAA 1115
LR + +V Q+P F +I EN+AYG A + + EIVE +
Sbjct: 97 ELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETS 143
|
Length = 267 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 2e-09
Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 3/97 (3%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
+EL+ V + I S+ + AG+ A+ G SG GKST++ ++ P G +
Sbjct: 4 LELKQVGYLAGDAK---ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTL 60
Query: 1062 KIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENI 1098
+ D+ + + R+ ++ +Q P LF T+ +N+
Sbjct: 61 LFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNL 97
|
Length = 223 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.2 bits (143), Expect = 2e-09
Identities = 35/108 (32%), Positives = 57/108 (52%), Gaps = 10/108 (9%)
Query: 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLK-- 1058
I+++N++ Y + + S++I TAL+G SG GKST I + R D +K
Sbjct: 12 QIKVENLNLWYGEK---QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNC 68
Query: 1059 ---GDVKIDDRDI--RSYHLRSLRRHIALVSQEPTLFAGTIRENIAYG 1101
G V I+ DI + LR+++ +V Q+P F +I +N+AYG
Sbjct: 69 RIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYG 116
|
Length = 258 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 3e-09
Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 15/120 (12%)
Query: 1006 NVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPL-----KGD 1060
NV + D + S+ I + TA++G SG GKST + I R D + +G+
Sbjct: 46 NVFYG-----DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGE 100
Query: 1061 VKIDDRDIRSYHLR--SLRRHIALVSQEPTLFAGTIRENIAYG---ASDEIDESEIVEAA 1115
+ +++ + +LRR I +V Q+P F +I +N+AYG + D E VE +
Sbjct: 101 LTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEES 160
|
Length = 285 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 3e-09
Identities = 41/128 (32%), Positives = 64/128 (50%), Gaps = 9/128 (7%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
+ L + F+Y +P F + G+ TA+VG SGSGKST++ LI F P G V
Sbjct: 1 VRLDKIRFSYGEQP-----MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRV 55
Query: 1062 KIDDRDIRSYHLRSLRRHIALVSQEPTLFAG-TIRENIAYGASDEIDESEI-VEAAKAAN 1119
I+ D+ R ++++ QE LFA T+ +N+ G S + + +A + A
Sbjct: 56 LINGVDVT--AAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVAL 113
Query: 1120 AHDFIAGL 1127
A +AGL
Sbjct: 114 ARVGLAGL 121
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 3e-09
Identities = 31/128 (24%), Positives = 62/128 (48%), Gaps = 11/128 (8%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
++L+N+ Y + +G S+ + G L+G +G+GK+T++ ++ P G +
Sbjct: 1 LQLENLTKRYGKK---RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTI 56
Query: 1062 KIDDRDIRSYHLRSLRRHIALVSQEPTLFAG-TIRENIAY-----GASDEIDESEIVEAA 1115
+ID +D+ + LRR I + QE ++ T+RE + Y G + ++ + E
Sbjct: 57 RIDGQDVLK-QPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVL 115
Query: 1116 KAANAHDF 1123
+ N D
Sbjct: 116 ELVNLGDR 123
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 3e-09
Identities = 75/385 (19%), Positives = 153/385 (39%), Gaps = 35/385 (9%)
Query: 719 TSIYAFCFLGLAVFTLVINIIQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSS 778
+ + FLGL + +V ++I +G+H ++R + KIL + ++ S
Sbjct: 47 SLLVLPEFLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIER--LGS 104
Query: 779 GAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAW----RLALVMIAVQPL 834
+ + L D + S R LVQ A+ + ++A+ L ++ +
Sbjct: 105 ARLLAGLTSDVRNI-SFAFSRLPELVQ---AIILTLGSAAYLAYLSPKMFLLTVVWIVVT 160
Query: 835 VIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRIL--KMLEKAQQ 892
+ F + K M+ A + + + + + +T + + + Q
Sbjct: 161 IWGGFVLMARVYKHMA-AARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQ 219
Query: 893 GPRRESIRQSWYAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETF--MILVS 950
R IR + + + + +S + L FW L +S + T ++L
Sbjct: 220 EYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALSL----GWASTNVAATIVLVLLFL 275
Query: 951 TGRVIADAGSMTTDIAKGSDAVGSVFAVMDRYTKIE--PEDPEGHQPERITG--NIELQN 1006
+++ G + T + + ++ K+E P + +P+ +EL+N
Sbjct: 276 RTPLLSAVGILPT--------LLTAQVAFNKIAKLELAPYKADFPRPQAFPDWKTLELRN 327
Query: 1007 VHFAYPARPDVMIFEG-FSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDD 1065
V FAY D G ++ I+ G+ L+G +GSGKST+ L+ Y P G++ +D
Sbjct: 328 VRFAYQ---DNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDG 384
Query: 1066 RDIRSYHLRSLRRHIALVSQEPTLF 1090
+ + + L R+ + V + LF
Sbjct: 385 KPVSAEQLEDYRKLFSAVFSDYHLF 409
|
Length = 546 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 3e-09
Identities = 61/227 (26%), Positives = 105/227 (46%), Gaps = 37/227 (16%)
Query: 382 FCLTIPAGKTVALVGGSGSGKSTVIA----LLQRFYAPLGGEIILDGVSIDKLQLKWLRS 437
+ AG+ + LVG +G+GKST++A LL P G I G ++ L
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-----PGSGSIQFAGQPLEAWSAAELAR 69
Query: 438 QMG-LVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGER 496
L Q+ FA + F + ++A N + + D R
Sbjct: 70 HRAYLSQQQTPPFAMPV-----FQYLTLHQPDKTRTEAVASALNEVAEALGLDDKL--GR 122
Query: 497 GV-QMSGGQKQRIAIARAIIK-APRI------LLLDEATSALDSESERVVQE-ALDKAVV 547
V Q+SGG+ QR+ +A +++ P I LLLDE ++LD V Q+ ALD+ +
Sbjct: 123 SVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLD-----VAQQAALDRLLS 177
Query: 548 -----GRTTIIIAHRLS-TIRNADVIAVVQDGQVMETGSHDELIQAE 588
G ++ +H L+ T+R+AD + +++ G+++ +G DE++ E
Sbjct: 178 ELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLTPE 224
|
Length = 248 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 3e-09
Identities = 41/170 (24%), Positives = 73/170 (42%), Gaps = 31/170 (18%)
Query: 368 FAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKST---VIALLQRFYAPLGGEIILDG 424
R + I KDF + G+ V ++G GSG ST +A + G+I +G
Sbjct: 12 TTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNG 71
Query: 425 VSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQ 484
+ + K+ ++ VS+E F T ++ E ++ A + F+R
Sbjct: 72 IPYKEFAEKY-PGEIIYVSEEDVHFPT------------LTVRETLDFALRCKGNEFVR- 117
Query: 485 LPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSES 534
G+ SGG+++R++IA A++ +L D +T LDS +
Sbjct: 118 ------------GI--SGGERKRVSIAEALVSRASVLCWDNSTRGLDSST 153
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 4e-09
Identities = 41/119 (34%), Positives = 64/119 (53%), Gaps = 7/119 (5%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
IEL+NV Y + +G S+ I+ G+ L+G SG GK+T++ LI F P G++
Sbjct: 1 IELENVSKFYG---GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEI 57
Query: 1062 KIDDRDIRSYHLRSLRRHIALVSQEPTLFAG-TIRENIAYGAS-DEIDESEIVEAAKAA 1118
+D +DI +L +R + V Q LF T+ ENIA+G ++ ++EI E A
Sbjct: 58 LLDGKDI--TNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEA 114
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 4e-09
Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 8/122 (6%)
Query: 1002 IELQNVHFAYP--ARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKG 1059
I ++++ F YP A + + S + G+ A+VG +GSGKST+ L+ P G
Sbjct: 6 IRVEHISFRYPDAATYAL---KDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAG 62
Query: 1060 DVKIDDRDIRSYHLRSLRRHIALVSQEP-TLFAG-TIRENIAYGASDE-IDESEIVEAAK 1116
+ + + + +RR + +V Q P F G T+++++A+G + + E+VE
Sbjct: 63 TITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVD 122
Query: 1117 AA 1118
A
Sbjct: 123 QA 124
|
Length = 279 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.4 bits (141), Expect = 4e-09
Identities = 37/109 (33%), Positives = 60/109 (55%), Gaps = 14/109 (12%)
Query: 1024 SIKIEAGKSTALVGQSGSGKSTIIGLIERFYD-----PLKGDVKIDDRDI--RSYHLRSL 1076
++ I K TAL+G SG GKST + + R D ++G+V +D ++I + + L
Sbjct: 24 NLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVEL 83
Query: 1077 RRHIALVSQEPTLFAGTIRENIAY-----GASDEIDESEIVEAA--KAA 1118
R+ + +V Q+P F +I +N+AY G D+ + +IVE A KAA
Sbjct: 84 RKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAA 132
|
Length = 251 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 4e-09
Identities = 44/157 (28%), Positives = 78/157 (49%), Gaps = 26/157 (16%)
Query: 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRS 437
+ D L + GK + L+G +G+GKST++ ++ AP G I +G +L+
Sbjct: 19 VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG------KLR---- 68
Query: 438 QMGLVSQEPALFAT---SIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVG 494
+G V Q+ L T ++ + + E+++ A K A + I P Q
Sbjct: 69 -IGYVPQKLYLDTTLPLTVNRFLRL-RPGTKKEDILPALKRVQAGHLIDA-PMQ------ 119
Query: 495 ERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALD 531
++SGG+ QR+ +ARA++ P++L+LDE T +D
Sbjct: 120 ----KLSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
|
Length = 251 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 5e-09
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 1024 SIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALV 1083
++++ G AL+G SGSGKST++ +I P G ++++ +D H R R I V
Sbjct: 20 NLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHAR--DRKIGFV 77
Query: 1084 SQEPTLFAG-TIRENIAYG 1101
Q LF T+R+NIA+G
Sbjct: 78 FQHYALFKHLTVRDNIAFG 96
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 6e-09
Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 1002 IELQNVHFAYPARPDVM-IFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGD 1060
+ ++N+ Y S++IE G++ +VG+SGSGKST+ L+ P G
Sbjct: 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGS 63
Query: 1061 VKIDDRDI-RSYHLRSLRRHIALVSQEPT 1088
+ +D + + ++ R + +V Q+P
Sbjct: 64 ILLDGKPLAPKKRAKAFYRPVQMVFQDPY 92
|
Length = 252 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 6e-09
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 6/84 (7%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
IE++N+ +Y RP + E S+ +E G+ TAL+G +G+GKST++ I P G++
Sbjct: 5 IEVENLTVSYGNRP---VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEI 61
Query: 1062 KIDDRDIRSYHLRSLRRHIALVSQ 1085
KI + +R R R I V Q
Sbjct: 62 KIFGKPVRK---RRKRLRIGYVPQ 82
|
Length = 254 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 7e-09
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 6/84 (7%)
Query: 1024 SIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDI----RSYHLRSLRRH 1079
+ + E GK A+VGQ+GSGKST+I I P G V +DD I + ++R +R+
Sbjct: 27 NTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKR 86
Query: 1080 IALVSQ--EPTLFAGTIRENIAYG 1101
I +V Q E LF T+ I +G
Sbjct: 87 IGMVFQFPESQLFEDTVEREIIFG 110
|
Length = 286 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 7e-09
Identities = 33/120 (27%), Positives = 61/120 (50%), Gaps = 3/120 (2%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
IE++N+ F Y + S ++ G+ +++G +GSGKST + LI+ + G +
Sbjct: 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64
Query: 1062 KIDDRDIRSYHLRSLRRHIALVSQEP-TLFAG-TIRENIAYGASDE-IDESEIVEAAKAA 1118
ID + ++ +R I +V Q P F G T+ +++A+G ++ I E+ E A
Sbjct: 65 IIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEA 124
|
Length = 279 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.7 bits (139), Expect = 7e-09
Identities = 41/131 (31%), Positives = 65/131 (49%), Gaps = 15/131 (11%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPL---- 1057
IE++N++ + D I + ++ I TAL+G SG GKST I + R D +
Sbjct: 4 IEVENLNTYFD---DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFR 60
Query: 1058 -KGDVKIDDRDI--RSYHLRSLRRHIALVSQEPTLFAGTIRENIAY-----GASDEIDES 1109
+G + +D DI + + LR+ + +V Q+P F +I +N+AY G DE
Sbjct: 61 HEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIE 120
Query: 1110 EIVEAAKAANA 1120
E VE + A A
Sbjct: 121 ERVEESLKAAA 131
|
Length = 250 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 1e-08
Identities = 39/131 (29%), Positives = 59/131 (45%), Gaps = 20/131 (15%)
Query: 1002 IELQN--VHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKST----IIGLIERFYD 1055
+E++N V FA V S ++E G+ +VG+SGSGKST ++GL+
Sbjct: 6 LEVENLTVEFATDGGR-VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGR 64
Query: 1056 PLKGDVKIDDRDIRSY---HLRSLR-RHIALVSQEP-TLFAG--TIRENIA------YGA 1102
G+V +D RD+ +R LR + IA++ Q+P T TI + I
Sbjct: 65 ITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKG 124
Query: 1103 SDEIDESEIVE 1113
S VE
Sbjct: 125 SRAEARKRAVE 135
|
Length = 539 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (141), Expect = 1e-08
Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 5/103 (4%)
Query: 1002 IELQNVHFAYP-ARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGD 1060
IEL+N+ +P + S+ I AG+ ++G SG+GKST+I I P G
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 1061 VKIDDRDIRSY---HLRSLRRHIALVSQEPTLFAG-TIRENIA 1099
V +D +D+ + LR RR I ++ Q L + T+ +N+A
Sbjct: 62 VLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVA 104
|
Length = 343 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 56.7 bits (138), Expect = 1e-08
Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 1022 GFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDI--RSYHLRSLRRH 1079
S + G+ L+G +G+GK+T+ LI F P G V D DI H + R
Sbjct: 18 DVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIA-RLG 76
Query: 1080 IALVSQEPTLFAG-TIRENIAYGA 1102
I Q P LF T+ EN+ A
Sbjct: 77 IGRTFQIPRLFPELTVLENVMVAA 100
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 1e-08
Identities = 60/233 (25%), Positives = 111/233 (47%), Gaps = 40/233 (17%)
Query: 379 FK---DFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKL-QLKW 434
FK D L + G+ ++G +G+GK+T++ ++ P G ++ G + L + +
Sbjct: 15 FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQI 74
Query: 435 LRSQMGLVSQEPALF-ATSIKEN-------------ILFGK----EDASMEEVIEAAKAS 476
R+ +G Q+P +F ++ EN LF + E +EEV+E
Sbjct: 75 ARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLE----- 129
Query: 477 NAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESER 536
I L + D G +S GQKQ + I +++ P++LLLDE + + ++ E
Sbjct: 130 ----TIG-LADEADRLAGL----LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGM-TDEET 179
Query: 537 VVQEALDKAVVG-RTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQA 587
L K++ G + +++ H + +R+ AD + V+ G V+ GS D+ +QA
Sbjct: 180 EKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQ-VQA 231
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 1e-08
Identities = 48/206 (23%), Positives = 92/206 (44%), Gaps = 20/206 (9%)
Query: 381 DFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440
+ +P G+ L+G +G+GK+T ++ P GEI +G + + ++++G
Sbjct: 20 NISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEI----KNRIG 75
Query: 441 LVSQEPALFA-TSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQ 499
+ +E L+ ++++ + + E M + K R T+ + +
Sbjct: 76 YLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLE--RLEIVGKKTKKIK---E 130
Query: 500 MSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVV-----GRTTIII 554
+S G +Q+I A+I P +L+LDE S LD V E L A+ G T I
Sbjct: 131 LSKGNQQKIQFISAVIHEPELLILDEPFSGLDP----VNVELLKDAIFELKEEGATIIFS 186
Query: 555 AHRLSTI-RNADVIAVVQDGQVMETG 579
+HR+ + D + +++ GQ + G
Sbjct: 187 SHRMEHVEELCDRLLMLKKGQTVLYG 212
|
Length = 300 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 2e-08
Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 12/114 (10%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
+EL+ + ++ + + + I G+ L+G SG GK+T++ LI F P G +
Sbjct: 15 VELRGISKSFDGKE---VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRI 71
Query: 1062 KIDDRDIRSYHLRSLRRHIALVSQEPTLFAG-TIRENIAYG------ASDEIDE 1108
+D +DI H+ + RH+ V Q LF T+ EN+A+G + EI
Sbjct: 72 MLDGQDIT--HVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITP 123
|
Length = 375 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 2e-08
Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 15/110 (13%)
Query: 1021 EGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPL-----KGDVKIDDRDIRSYHLR- 1074
+ + I + TA +G SG GKSTI+ R D + +G V +++ + +
Sbjct: 27 KNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86
Query: 1075 -SLRRHIALVSQEPTLFAGTIRENIAYGAS--------DEIDESEIVEAA 1115
+RR I +V Q+P F +I +NIAYGA DE+ E + +AA
Sbjct: 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAA 136
|
Length = 264 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 2e-08
Identities = 35/129 (27%), Positives = 60/129 (46%), Gaps = 15/129 (11%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
I L+N+ AY RP + E S+ + G+ LVG++G+GKST++ ++ +P G+V
Sbjct: 4 ITLENLSLAYGDRP---LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEV 60
Query: 1062 KIDDRDIRSYHLRSLRRHIALVSQEPTLFAG-TIRENIAYGASDEIDESEIVEAAKAANA 1120
+ +R + +SQEP L T+ + + G + + +E A A A
Sbjct: 61 TR-PKGLR----------VGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLA 109
Query: 1121 HDFIAGLNE 1129
L E
Sbjct: 110 DPDDELLAE 118
|
Length = 530 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 54.4 bits (132), Expect = 2e-08
Identities = 29/77 (37%), Positives = 49/77 (63%), Gaps = 3/77 (3%)
Query: 499 QMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRL 558
Q+SGG+K R+A+A+ +++ P +LLLDE T+ LD ES ++EAL + T I+++H
Sbjct: 70 QLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKE--YPGTVILVSHDR 127
Query: 559 STIRN-ADVIAVVQDGQ 574
+ A I ++DG+
Sbjct: 128 YFLDQVATKIIELEDGK 144
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 55.7 bits (134), Expect = 2e-08
Identities = 48/203 (23%), Positives = 90/203 (44%), Gaps = 18/203 (8%)
Query: 366 VQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGV 425
+ F Y +P + + +PAG + L G +G+GK+T++ L+ P GEI+ +
Sbjct: 7 LDFDYHDQP---LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQ 63
Query: 426 SIDKLQLKWLRSQMGLVSQEPALFAT-SIKENILFGKEDASME-EVIEAAKASNAHNFIR 483
SI K L + Q+ V + +++EN L+ + + E + +
Sbjct: 64 SIKK-DLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCR-------LF 115
Query: 484 QLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSES-ERVVQEAL 542
L D G +S GQK+++A+ R + ++ LLDE ALD S ++ +
Sbjct: 116 SLEHLIDYPCG----LLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQ 171
Query: 543 DKAVVGRTTIIIAHRLSTIRNAD 565
+ G ++ +H+ + AD
Sbjct: 172 EHRAKGGAVLLTSHQDLPLNKAD 194
|
Length = 200 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 2e-08
Identities = 47/177 (26%), Positives = 83/177 (46%), Gaps = 8/177 (4%)
Query: 380 KDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439
K TI G+ V +G +G+GK+T + +L P GE+ + G+ K + K+LR ++
Sbjct: 38 KGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLR-RI 96
Query: 440 GLV--SQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERG 497
G+V + + + ++ + K + + + L + DT V R
Sbjct: 97 GVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPA-RFKKRLDELSELLDLEELLDTPV--R- 152
Query: 498 VQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIII 554
Q+S GQ+ R IA A++ P IL LDE T LD ++ ++ L + R T ++
Sbjct: 153 -QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVL 208
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 2e-08
Identities = 66/236 (27%), Positives = 110/236 (46%), Gaps = 41/236 (17%)
Query: 385 TIPAGKTVALVGGSGSGKS-TVIALLQRFYAP---LGGEIILDGVSIDKLQLKWLR---- 436
++ G+ V +VG SGSGKS + +A++ P + ++ +G + ++ K R
Sbjct: 29 SVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVG 88
Query: 437 SQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHN--FIRQLPQQYDTQVG 494
+++ ++ Q+P TS+ G + ++EA K N RQ QVG
Sbjct: 89 AEVAMIFQDPM---TSLNPCYTVGFQ------IMEAIKVHQGGNKKTRRQRAIDLLNQVG 139
Query: 495 ------ERGV---QMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEAL--- 542
V Q+SGG QR+ IA AI P++L+ DE T+ALD + + E L
Sbjct: 140 IPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLEL 199
Query: 543 ----DKAVVGRTTIIIAHRLSTI-RNADVIAVVQDGQVMETGSHDELIQAESGLYT 593
+ A+ ++I H L+ + A I V+ GQV+ETG ++ +A YT
Sbjct: 200 QQKENMAL-----VLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIFRAPRHPYT 250
|
Length = 326 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.1 bits (139), Expect = 3e-08
Identities = 50/229 (21%), Positives = 104/229 (45%), Gaps = 30/229 (13%)
Query: 379 FKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQ-LKWLRS 437
+D T+ AG+ + + G G+G++ + L GEI+LDG + +++
Sbjct: 275 VRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKA 334
Query: 438 QMGLVS---QEPALFAT-SIKENILFG--KEDASMEEVIEAAKASNAHNFIRQL---PQQ 488
+ V + L SI ENI + + + + + A +IR+L
Sbjct: 335 GIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPS 394
Query: 489 YDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALD----SESERVVQEALDK 544
+ +G +SGG +Q++ +AR + P++L+LDE T +D +E R+++E +
Sbjct: 395 PEQPIGT----LSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAE 450
Query: 545 AVVGRTTIIIAHRLST-----IRNADVIAVVQDGQVMETGSHDELIQAE 588
G+ ++I S+ + +D I V+++G+++ +E +
Sbjct: 451 ---GKAILMI----SSELPELLGLSDRILVMREGRIVGELDREEATEEA 492
|
Length = 500 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 3e-08
Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 8/108 (7%)
Query: 1002 IELQNVHFAY-PARP-DVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKG 1059
I+ +NV + Y P P + + S ++E G ALVG +GSGKST++ P G
Sbjct: 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSG 62
Query: 1060 DVKIDDRDIR----SYHLRSLRRHIALVSQ--EPTLFAGTIRENIAYG 1101
+ I I + +L+ LR+ ++LV Q E LF T+ +++ +G
Sbjct: 63 TITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFG 110
|
Length = 287 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 3e-08
Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 15/104 (14%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKST----IIGLIERFYDPL 1057
+ +N+ +Y R V S+++ +G+ L+G +G+GK+T I+GL+ P
Sbjct: 5 LVAENLAKSYKKRKVV---NDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR----PD 57
Query: 1058 KGDVKIDDRDIRSY--HLRSLRRHIALVSQEPTLFAG-TIRENI 1098
G + +DD DI H R+ R I + QE ++F T+ +NI
Sbjct: 58 SGKILLDDEDITKLPMHKRA-RLGIGYLPQEASIFRKLTVEDNI 100
|
Length = 243 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (133), Expect = 3e-08
Identities = 47/174 (27%), Positives = 78/174 (44%), Gaps = 36/174 (20%)
Query: 372 SRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKL- 430
R E I+F T+ AG+ V + G +G+GK++++ +L P GE++ G I +
Sbjct: 10 ERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR 69
Query: 431 -----QLKWLRSQMGLVSQEPALFATSIKENILFGKEDASM--EEVIEAAKASNAHNFIR 483
L +L Q G+ + L A EN+ F + +E + A A
Sbjct: 70 DEYHQDLLYLGHQPGI---KTELTAL---ENLRFYQRLHGPGDDEALWEALA-------- 115
Query: 484 QLPQQYDTQVGERGV------QMSGGQKQRIAIARAIIKAPRILLLDEATSALD 531
QVG G Q+S GQ++R+A+AR + + +LDE +A+D
Sbjct: 116 --------QVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAID 161
|
Length = 204 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 4e-08
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 1024 SIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALV 1083
S+++E G ++G +GSGKS ++ I F P G + ++ +DI + L +R I+ V
Sbjct: 19 SLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITN--LPPEKRDISYV 76
Query: 1084 SQEPTLFAG-TIRENIAYG 1101
Q LF T+ +NIAYG
Sbjct: 77 PQNYALFPHMTVYKNIAYG 95
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (132), Expect = 4e-08
Identities = 42/132 (31%), Positives = 63/132 (47%), Gaps = 22/132 (16%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
IE +N++ Y D +IKI TAL+G SG GKST + + R D ++G +
Sbjct: 8 IETENLNLFYT---DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEG-I 63
Query: 1062 KIDDRDI--------RSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGAS---------- 1103
KI+ I ++ + LRR I +V Q P F +I +NI+YG
Sbjct: 64 KIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKL 123
Query: 1104 DEIDESEIVEAA 1115
DEI E + ++A
Sbjct: 124 DEIVEQSLKKSA 135
|
Length = 254 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 4e-08
Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 9/117 (7%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
+ +++ Y V + +G + AG+ AL+G +G+GKST++ +I P G +
Sbjct: 12 LCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTL 68
Query: 1062 KIDDRDIRSYHLRSLRRH---IALVSQEPTLFAG-TIRENIAYGASDEIDESEIVEA 1114
+I L + H I LV QEP LF +++ENI +G + ++
Sbjct: 69 EIGGN--PCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQ 123
|
Length = 510 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 4e-08
Identities = 58/195 (29%), Positives = 90/195 (46%), Gaps = 36/195 (18%)
Query: 385 TIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQ 444
TI G+ V LVG +G GKST++ALL+ EI DG S W Q+ V+Q
Sbjct: 23 TINPGQKVGLVGKNGCGKSTLLALLK-------NEISADGGSY-TFPGNW---QLAWVNQ 71
Query: 445 E-PALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDT------------ 491
E PAL +++ I +E +E + A N + I + + D
Sbjct: 72 ETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAAS 131
Query: 492 ----------QVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEA 541
Q+ SGG + R+ +A+A+I +LLLDE T+ LD ++ +++
Sbjct: 132 LLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKW 191
Query: 542 LDKAVVGRTTIIIAH 556
L K+ G T I+I+H
Sbjct: 192 L-KSYQG-TLILISH 204
|
Length = 638 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 5e-08
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 6/84 (7%)
Query: 1024 SIKIEAGKSTALVGQSGSGKSTIIGLIERFYD-----PLKGDVKIDDRDI-RSYHLRSLR 1077
++ I A + TAL+G SG GKST++ + R D + G + +D DI + + LR
Sbjct: 23 NLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLR 82
Query: 1078 RHIALVSQEPTLFAGTIRENIAYG 1101
+ +V Q+P F +I EN+AYG
Sbjct: 83 IKVGMVFQKPNPFPMSIYENVAYG 106
|
Length = 249 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 5e-08
Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 1022 GFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIR--SYHLRSLRRH 1079
S+++ G+ L+G +G+GK+T+ LI FY P G V RDI H + R
Sbjct: 22 DVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIA-RLG 80
Query: 1080 IALVSQEPTLFAG-TIRENIAYGA 1102
IA Q LF G T+ EN+A GA
Sbjct: 81 IARTFQITRLFPGLTVLENVAVGA 104
|
Length = 250 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 5e-08
Identities = 28/82 (34%), Positives = 48/82 (58%), Gaps = 7/82 (8%)
Query: 1023 FSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRS--LRRHI 1080
F + +E G+ A++G SG+GKST++ LI F P G + ++ +D H + RR +
Sbjct: 18 FDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQD----HTTTPPSRRPV 73
Query: 1081 ALVSQEPTLFAG-TIRENIAYG 1101
+++ QE LF+ T+ +NI G
Sbjct: 74 SMLFQENNLFSHLTVAQNIGLG 95
|
Length = 232 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 6e-08
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 9/86 (10%)
Query: 1021 EGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRD--IRSYHLRSLRR 1078
+ S + G++ LVG+SGSGKST+ ++ P G + D +D + LR LRR
Sbjct: 308 DDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRR 367
Query: 1079 HIALVSQEPTLFAG-----TIRENIA 1099
I +V Q+P ++ T+ + +A
Sbjct: 368 RIQMVFQDP--YSSLNPRMTVGDILA 391
|
Length = 539 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 6e-08
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 1002 IELQNVHFAYPAR------PDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYD 1055
+E++N+ +P V +G S I+ G++ LVG+SG GKST+ LI +
Sbjct: 5 LEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE 64
Query: 1056 PLKGDVKIDDRDIR 1069
P G++ + +DI
Sbjct: 65 PTSGEILFEGKDIT 78
|
Length = 268 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 7e-08
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 16/87 (18%)
Query: 1003 ELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKST----IIGLIERFYDPLK 1058
E++++ +Y P + E S +++ G+ A+VG +G+GKST I+GL++ P
Sbjct: 1 EVEDLTVSYGGHP---VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK----PTS 53
Query: 1059 GDVKIDDRDIRSYHLRSLRRHIALVSQ 1085
G +++ + L R+ I V Q
Sbjct: 54 GSIRVFGK-----PLEKERKRIGYVPQ 75
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 7e-08
Identities = 33/92 (35%), Positives = 52/92 (56%), Gaps = 6/92 (6%)
Query: 1016 DVMIFEGFSIKIEAGKSTALVGQSGSGKSTII----GLIERFYDP-LKGDVKIDDRDIRS 1070
V + +G +++I TAL+G SGSGKST++ LIE + + + G+V +D +DI
Sbjct: 15 QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFK 74
Query: 1071 YHLRSLRRHIALVSQEPTLFAG-TIRENIAYG 1101
+ LRR + +V Q P +I EN+A G
Sbjct: 75 MDVIELRRRVQMVFQIPNPIPNLSIFENVALG 106
|
Length = 250 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 7e-08
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
++LQNV + I S + AG+ + G SG GKST++ ++ P G +
Sbjct: 8 LQLQNVGYLAGDAK---ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTL 64
Query: 1062 KIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAY 1100
+ DI + R+ ++ +Q PTLF T+ +N+ +
Sbjct: 65 LFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIF 103
|
Length = 225 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.4 bits (132), Expect = 7e-08
Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 15/109 (13%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKST----IIGLIERFYDPL 1057
+E++N+ Y G S+++E G+ AL+G++G+GK+T I+GL+ P
Sbjct: 4 LEVENLSAGYGKIQ---ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR----PR 56
Query: 1058 KGDVKIDDRDIRSY--HLRSLRRHIALVSQEPTLFAG-TIRENIAYGAS 1103
G + D DI H R+ R IA V + +F T+ EN+ GA
Sbjct: 57 SGRIIFDGEDITGLPPHERA-RLGIAYVPEGRRIFPRLTVEENLLLGAY 104
|
Length = 237 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 7e-08
Identities = 59/210 (28%), Positives = 93/210 (44%), Gaps = 45/210 (21%)
Query: 384 LTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILD--------GVSIDKLQLKWL 435
L I + V LVG +G+GKST++ +L GE++LD + + +LQ
Sbjct: 24 LHIEDNERVCLVGRNGAGKSTLMKIL-------NGEVLLDDGRIIYEQDLIVARLQQDPP 76
Query: 436 RSQMGLVS-------QEPA-----------LFATSIKENILFGKEDASMEEVIEAAKA-- 475
R+ G V +E A L T E L E A ++E ++
Sbjct: 77 RNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNL--NELAKLQEQLDHHNLWQ 134
Query: 476 --SNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSE 533
+ + + QL D + +SGG ++ A+ RA++ P +LLLDE T+ LD E
Sbjct: 135 LENRINEVLAQLGLDPDAALSS----LSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIE 190
Query: 534 SERVVQEALDKAVVGRTTIIIAHRLSTIRN 563
+ ++ L K G + I I+H S IRN
Sbjct: 191 TIEWLEGFL-KTFQG-SIIFISHDRSFIRN 218
|
Length = 635 |
| >gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 7e-08
Identities = 64/259 (24%), Positives = 105/259 (40%), Gaps = 68/259 (26%)
Query: 380 KDFCLTIPAGKTVALVGGSGSGKSTVI------ALLQRFYAPLGGEIILDGVSIDKLQ-L 432
K+ + IP G + G SGSGKS++I AL +R + L E + I+ L+ +
Sbjct: 12 KNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLH--LKKEQPGNHDRIEGLEHI 69
Query: 433 KWLRSQMGLVSQEP-------------ALFATSIKENILF-------------------G 460
+ ++ Q P +F I+E LF G
Sbjct: 70 DKVI----VIDQSPIGRTPRSNPATYTGVF-DEIRE--LFCEVCKGKRYNRETLEVRYKG 122
Query: 461 KE-----DASMEEVIEA-AKASNAHNFIRQLPQ---QYDTQVGERGVQMSGGQKQRIAIA 511
K D ++EE +E ++ L Y ++G+ +SGG+ QRI +A
Sbjct: 123 KSIADVLDMTVEEALEFFENIPKIARKLQTLCDVGLGY-IKLGQPATTLSGGEAQRIKLA 181
Query: 512 RAIIKAPR---ILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRNADVI 567
+ + K + +LDE T+ L + + E L + V G T ++I H L I+ AD I
Sbjct: 182 KELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCADWI 241
Query: 568 ------AVVQDGQVMETGS 580
GQV+ +G+
Sbjct: 242 IDLGPEGGDGGGQVVASGT 260
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 9e-08
Identities = 29/98 (29%), Positives = 54/98 (55%), Gaps = 14/98 (14%)
Query: 1002 IELQNVHFAYP-ARPDVMIFEGFSIKIEAGKSTALVGQSGSGKST----IIGLIERFYDP 1056
+E++N+ ++P V +G S +++ G+ +VG+SGSGKS I+GL+
Sbjct: 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLP--KPN 59
Query: 1057 LK---GDVKIDDRDIRSYH---LRSLR-RHIALVSQEP 1087
+ G++ D +D+ S LR +R + IA++ Q+P
Sbjct: 60 ARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDP 97
|
Length = 316 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 9e-08
Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 10/124 (8%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
+EL+ + ++ V +G S+ + G+ AL+G++G+GKST++ ++ Y P G++
Sbjct: 9 LELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEI 65
Query: 1062 KIDDRDIRSYHLR-SLRRHIALVSQEPTLFAG-TIRENIAYG-----ASDEIDESEIVEA 1114
ID + + R +L IA V QE +L ++ ENI G ID +
Sbjct: 66 LIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRR 125
Query: 1115 AKAA 1118
A+
Sbjct: 126 AREL 129
|
Length = 500 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 9e-08
Identities = 34/110 (30%), Positives = 56/110 (50%), Gaps = 18/110 (16%)
Query: 1002 IELQNVHFAYP-ARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGD 1060
IE+ ++ ++ I +G + ++ G++ A+VG SGSGKST++ ++ DP G+
Sbjct: 7 IEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGE 66
Query: 1061 VKID-------DRDIRSYHLRSLRRHIALVSQE----PTLFAGTIRENIA 1099
V++ D D R+ LR RH+ V Q P L T EN+A
Sbjct: 67 VRLLGQPLHKLDEDARA-ALR--ARHVGFVFQSFHLIPNL---TALENVA 110
|
Length = 228 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 56.1 bits (135), Expect = 1e-07
Identities = 86/420 (20%), Positives = 169/420 (40%), Gaps = 62/420 (14%)
Query: 715 IKKKTSIYAF-CFLGLAVFTLVINIIQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQ 773
I ++ Y F ++G A L + + + ++KR+ E+ML +L + +
Sbjct: 919 ITPTSAYYIFYIYVGTADSVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNT 978
Query: 774 DENSSGAICSRLAKDANVVRSL----VGDRTALLVQTISAVTIAFTMGLFIAWRLALVMI 829
+ +G I +R KD ++ + + D L + + A+ + + +I I
Sbjct: 979 MK--AGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYI-------FI 1029
Query: 830 AVQPLVIICFYARRVLLK-SMSNKAIKAQAESSKLAAEAVS--NLRTITAFSSQHRILKM 886
A P+ +I R L+ S K ++++A S + S L TI AF Q +
Sbjct: 1030 AAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETL 1089
Query: 887 LEKAQQGPRRESIRQSWYAGIGLAFSQSLASCTWAL---DFWYGGRLIADGYIS------ 937
KA +W+ L++ W D + IA +I+
Sbjct: 1090 FHKALN-----LHTANWF--------LYLSTLRWFQMRIDIIFVFFFIAVTFIAIGTNQD 1136
Query: 938 ---SKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRYTKIEPEDPEGHQ 994
+ T + + + A S+ D S V VF +D + EP G
Sbjct: 1137 GEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRS--VSRVFKFIDLPQE-EPRPSGGGG 1193
Query: 995 PERITGNIELQNVHFA--YPARPDVM--------------IFEGFSIKIEAGKSTALVGQ 1038
+++ + ++N H +P+ + + + S +E G+ L+G+
Sbjct: 1194 KYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGR 1253
Query: 1039 SGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENI 1098
+GSGKST++ + R +G+++ID S L++ R+ ++ Q+ +F+GT R+N+
Sbjct: 1254 TGSGKSTLLSALLRLLST-EGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNL 1312
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 52.0 bits (126), Expect = 1e-07
Identities = 25/85 (29%), Positives = 48/85 (56%), Gaps = 4/85 (4%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
+EL+ + + V +G S+ + G+ AL+G++G+GKST++ ++ Y P G++
Sbjct: 1 LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEI 57
Query: 1062 KIDDRDIRSYHLRSLRRH-IALVSQ 1085
+D +++ R RR IA+V Q
Sbjct: 58 LVDGKEVSFASPRDARRAGIAMVYQ 82
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 1e-07
Identities = 32/131 (24%), Positives = 68/131 (51%), Gaps = 7/131 (5%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
++++ +++ Y + +G +I I+ G+ TA++G +G+GKST+ + P G +
Sbjct: 6 LKVEELNYNYSDGTHAL--KGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI 63
Query: 1062 KIDDR--DIRSYHLRSLRRHIALVSQEP--TLFAGTIRENIAYGASD-EIDESEIVEAAK 1116
D + D L LR + +V Q+P LF+ ++ +++++GA + ++ E E+ +
Sbjct: 64 LFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVD 123
Query: 1117 AANAHDFIAGL 1127
A I L
Sbjct: 124 NALKRTGIEHL 134
|
Length = 283 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 1e-07
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 9/111 (8%)
Query: 1017 VMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSL 1076
+I +G + G T L+G +GSGKST++ L+ P G V + D+ R+
Sbjct: 14 RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRAR 73
Query: 1077 RRHIALVSQE-PTLFAGTIRENIAYG--------ASDEIDESEIVEAAKAA 1118
R +ALV Q+ T T+R+ +A G A D ++ +V+ A A
Sbjct: 74 ARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALAR 124
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 1e-07
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 995 PERITGN--IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIER 1052
P + G +E +NV Y ++ + S +I+ G A+VG +G+GKST++ L+
Sbjct: 313 PGKRLGKLVLEFENVSKGYD--GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAG 370
Query: 1053 FYDPLKGDVKI 1063
PL G VK+
Sbjct: 371 ELGPLSGTVKV 381
|
Length = 530 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 1e-07
Identities = 53/203 (26%), Positives = 95/203 (46%), Gaps = 14/203 (6%)
Query: 384 LTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSID-KLQLKWLRSQMGLV 442
L + AL+G +G+GKST++ L Y G I+ G ID K + L + + +V
Sbjct: 19 LKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMV 78
Query: 443 SQEPALF-ATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMS 501
QE L S+ +N+ G+ V + + +L D + + +S
Sbjct: 79 HQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPR--AKVATLS 136
Query: 502 GGQKQRIAIARAIIKAPRILLLDEATSALDSESE-----RVVQEALDKAVVGRTTIIIAH 556
Q Q I IA+A +I+++DE TS+L +E E ++++ ++ G + I+H
Sbjct: 137 VSQMQMIEIAKAFSYNAKIVIMDEPTSSL-TEKEVNHLFTIIRKLKER---GCGIVYISH 192
Query: 557 RLSTIRN-ADVIAVVQDGQVMET 578
++ I D I +++DGQ + T
Sbjct: 193 KMEEIFQLCDEITILRDGQWIAT 215
|
Length = 491 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 1e-07
Identities = 39/166 (23%), Positives = 70/166 (42%), Gaps = 41/166 (24%)
Query: 381 DFCLTIPAG-----KTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWL 435
+F L + G + + ++G +G GK+T I +L P G+I ++ ++
Sbjct: 12 EFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTV-------- 63
Query: 436 RSQMGLVSQEPALFATSIKENILFGKEDASMEEVI-EAAKASNAHNFIR-------QLPQ 487
S K + + ++ +++ K H + + Q+ Q
Sbjct: 64 ----------------SYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQ 107
Query: 488 QYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSE 533
D +V E +SGG+ QR+AIA + K I LLDE ++ LD E
Sbjct: 108 ILDREVPE----LSGGELQRVAIAACLSKDADIYLLDEPSAYLDVE 149
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 1e-07
Identities = 53/220 (24%), Positives = 89/220 (40%), Gaps = 36/220 (16%)
Query: 384 LTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILD-----GVSIDKLQ----LKW 434
LT+ AG + A VG +GSGKS + L L GE +S ++LQ +W
Sbjct: 24 LTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEW 83
Query: 435 LRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVG 494
R+ ++S + E I +D +Q Q G
Sbjct: 84 QRNNTDMLSPGEDDTGRTTAEIIQDEVKDP-------------------ARCEQLAQQFG 124
Query: 495 ------ERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDK-AVV 547
R +S G+ ++ + +A++ P +L+LDE LD S + + E L
Sbjct: 125 ITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQS 184
Query: 548 GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586
G T +++ +R I + V+ D + ETG +E++Q
Sbjct: 185 GITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQ 224
|
Length = 490 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 53.4 bits (128), Expect = 2e-07
Identities = 26/72 (36%), Positives = 43/72 (59%)
Query: 1027 IEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQE 1086
I+ G+ + G++GSGKS++ R D G + ID DI L +LR ++++ Q+
Sbjct: 44 IKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQD 103
Query: 1087 PTLFAGTIRENI 1098
P LF+G+IR N+
Sbjct: 104 PILFSGSIRFNL 115
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 2e-07
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 1024 SIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSY---HLRSLRRH- 1079
+ I G+ ++G SGSGKST + ++ R +P G + ID +I LR +RR
Sbjct: 13 DLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKK 72
Query: 1080 IALVSQEPTLFAG-TIRENIAYG 1101
I +V Q+ LF TI +N + G
Sbjct: 73 IGMVFQQFALFPHMTILQNTSLG 95
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.4 bits (128), Expect = 2e-07
Identities = 35/131 (26%), Positives = 62/131 (47%), Gaps = 20/131 (15%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPL---- 1057
IE++N Y + + ++KI + TA++G SG GK+T++ I R D +
Sbjct: 4 IEIENFSAYYG---EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFR 60
Query: 1058 -KGDVKIDDRDIRS--YHLRSLRRHIALVSQEPTLFAGTIRENIAYGAS----------D 1104
+G + +DI + R+ + +V Q+PT F +I +N+A+G D
Sbjct: 61 VEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLD 120
Query: 1105 EIDESEIVEAA 1115
I E + +AA
Sbjct: 121 RIVEESLKKAA 131
|
Length = 250 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (129), Expect = 2e-07
Identities = 37/119 (31%), Positives = 64/119 (53%), Gaps = 9/119 (7%)
Query: 1003 ELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKG--- 1059
E++N +F Y R + ++ I+ K TA +G SG GKST + + + D ++G
Sbjct: 82 EIRNFNFWYMNRTK-HVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSH 140
Query: 1060 --DVKIDDRDIRSYHLRSL--RRHIALVSQEPTLFAGTIRENIAYGASDE-IDESEIVE 1113
++ + RS + SL R I +V Q+PT F +I +N+AYG + I++ +I+E
Sbjct: 141 EGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILE 199
|
Length = 329 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (129), Expect = 2e-07
Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 9/112 (8%)
Query: 999 TGNIELQNVHFAYPARP--DVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGL-----IE 1051
+ +I L NV + Y + + S+ + K T ++G +GSGKST+I L I
Sbjct: 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIIS 63
Query: 1052 RFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEP--TLFAGTIRENIAYG 1101
+ GD I + ++ LR+ I LV Q P LF TI ++IA+G
Sbjct: 64 ETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFG 115
|
Length = 289 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 2e-07
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 14/114 (12%)
Query: 984 KIEPEDPEGHQPERITG--NIELQNVHFAYPARPDVMIFEGFSIK-----IEAGKSTALV 1036
+ P E +P+ +EL+NV FAY GFS+ I+ G+ L+
Sbjct: 303 ALAPYKAEFPRPQAFPDWQTLELRNVTFAYQD-------NGFSVGPINLTIKRGELLFLI 355
Query: 1037 GQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLF 1090
G +GSGKST+ L+ Y P G++ +D + + + R+ + V + LF
Sbjct: 356 GGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLF 409
|
Length = 547 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 2e-07
Identities = 47/178 (26%), Positives = 74/178 (41%), Gaps = 40/178 (22%)
Query: 386 IPAGKTVALVGGSGSGKSTVIALL-QRFYAPL-GGEIILDGVSIDKLQLKWLRSQMGLVS 443
+ G AL+G SG+GK+T++ +L R A + GEI+++G +DK + G V
Sbjct: 30 VKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKN----FQRSTGYVE 85
Query: 444 QEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGG 503
Q+ V EA + S +R L +
Sbjct: 86 QQDVHSPNL---------------TVREALRFSAL---LRGLSVE--------------- 112
Query: 504 QKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDK-AVVGRTTIIIAHRLST 560
Q++R+ I + P IL LDE TS LDS++ + L K A G+ + H+ S
Sbjct: 113 QRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSA 170
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 2e-07
Identities = 45/196 (22%), Positives = 84/196 (42%), Gaps = 45/196 (22%)
Query: 381 DFCLTIPAGK-----TVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWL 435
DF L + G+ + ++G +G GK+T + LL G I D S + L++
Sbjct: 354 DFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLL-------AGVIKPDEGSEEDLKV--- 403
Query: 436 RSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAH-NFIR-------QLPQ 487
S K + D ++E+++ +A S ++ + L
Sbjct: 404 ----------------SYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLED 447
Query: 488 QYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVV 547
+ V E +SGG+ QR+AIA A+ + + LLDE ++ LD E +V + + + +
Sbjct: 448 LLERPVDE----LSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIE 503
Query: 548 GR--TTIIIAHRLSTI 561
T +++ H + I
Sbjct: 504 NNEKTALVVDHDIYMI 519
|
Length = 591 |
| >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 2e-07
Identities = 43/191 (22%), Positives = 84/191 (43%), Gaps = 20/191 (10%)
Query: 381 DFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQ---LKWLRS 437
D +T + G +G GKS+++ ++ P G I +I+ + ++
Sbjct: 18 DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGH 77
Query: 438 QMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERG 497
+GL + ++ EN+ F E + E + AA H F + + E+
Sbjct: 78 NLGLKLE------MTVFENLKFWSEIYNSAETLYAA----IHYF------KLHDLLDEKC 121
Query: 498 VQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALD-KAVVGRTTIIIAH 556
+S G ++ +AIAR I + LLDE + L E+ ++ + KA G ++ +H
Sbjct: 122 YSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSH 181
Query: 557 RLSTIRNADVI 567
S+I++A ++
Sbjct: 182 LESSIKSAQIL 192
|
Length = 195 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 3e-07
Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 1019 IFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRR 1078
+ E S I G+ L+G++GSGKST++ R + +GD++ID S L+ R+
Sbjct: 19 VLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRK 77
Query: 1079 HIALVSQEPTLFAGTIRENI-AYGA-SDE 1105
++ Q+ +F+GT R+N+ YG SDE
Sbjct: 78 AFGVIPQKVFIFSGTFRKNLDPYGKWSDE 106
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 3e-07
Identities = 29/102 (28%), Positives = 57/102 (55%), Gaps = 5/102 (4%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
+E++ + +P V+ + S+ ++ G+ AL+G++G+GKST++ ++ Y P G++
Sbjct: 5 LEMRGITKRFP---GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEI 61
Query: 1062 KIDDRDIRSYHLRSLRRH-IALVSQEPTLFAG-TIRENIAYG 1101
++D +++R R R I +V Q L T+ ENI G
Sbjct: 62 RVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILG 103
|
Length = 501 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 3e-07
Identities = 42/127 (33%), Positives = 63/127 (49%), Gaps = 20/127 (15%)
Query: 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKST----IIGLIERFYDP 1056
++LQ V +Y + V+ +G + + G+ LVG SG GKST + GL ER
Sbjct: 3 GLKLQAVRKSYDGKTQVI--KGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGL-ERITS- 58
Query: 1057 LKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAG-TIRENIAYG------ASDEIDES 1109
G++ I R + L R IA+V Q L+ ++REN+AYG EI+E
Sbjct: 59 --GEIWIGGRVVN--ELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEE- 113
Query: 1110 EIVEAAK 1116
+ EAA+
Sbjct: 114 RVAEAAR 120
|
Length = 356 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 4e-07
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 12/85 (14%)
Query: 1024 SIKIEAGKSTALVGQSGSGKSTIIGLI--ERFYDPLKGDVKIDDRDIRSYHLRSLRRHIA 1081
S K + G+ TA++G SG+GKST++ + R + G+V I+ R + RS R+ I
Sbjct: 29 SGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPL---DKRSFRKIIG 85
Query: 1082 LVSQE----PTLFAGTIRENIAYGA 1102
V Q+ PTL T+RE + + A
Sbjct: 86 YVPQDDILHPTL---TVRETLMFAA 107
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (124), Expect = 4e-07
Identities = 37/131 (28%), Positives = 68/131 (51%), Gaps = 20/131 (15%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYD-----P 1056
I+++ V+F Y + + ++ + TA++G SG GKST++ + R D
Sbjct: 5 IKIRGVNFFYHKH---QVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGAR 61
Query: 1057 LKGDVKIDDRDIRSYHLR--SLRRHIALVSQEPTLFAGTIRENIAYGAS----------D 1104
L+G V +D+ +I S +L +LR+ + +V Q+P F +I +N+A+G D
Sbjct: 62 LEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLD 121
Query: 1105 EIDESEIVEAA 1115
E+ E + +AA
Sbjct: 122 EVVEKSLRQAA 132
|
Length = 251 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 5e-07
Identities = 29/101 (28%), Positives = 54/101 (53%), Gaps = 20/101 (19%)
Query: 1002 IELQNVHFAYPARPDVM--------IFEGFSIKIEAGKSTALVGQSGSGKST----IIGL 1049
+E++++ +P + + +G S+ + G++ LVG+SGSGKST ++ L
Sbjct: 277 LEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRL 336
Query: 1050 IERFYDPLKGDVKIDDRDIRSYH---LRSLRRHIALVSQEP 1087
I P +G+++ D +DI +R LRR + +V Q+P
Sbjct: 337 I-----PSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDP 372
|
Length = 534 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 6e-07
Identities = 37/106 (34%), Positives = 52/106 (49%), Gaps = 15/106 (14%)
Query: 1025 IKIEAGKSTALVGQSGSGKSTIIGLIERFYD-----PLKGDVKIDDRDIRSYHLRS--LR 1077
+KI A K A +G SG GKST++ R D ++G + DR+I + S LR
Sbjct: 41 LKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLR 100
Query: 1078 RHIALVSQEPTLFAGTIRENIAY--------GASDEIDESEIVEAA 1115
R + +V Q P F +I ENIA+ G DE+ E + AA
Sbjct: 101 RQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAA 146
|
Length = 274 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 6e-07
Identities = 51/216 (23%), Positives = 90/216 (41%), Gaps = 42/216 (19%)
Query: 379 FKDFCLTIP-AGKTVALVGGSGSGKSTVIALLQ--------RFYAPLGGEIILDGVSIDK 429
FK + L P GK V ++G +G GKST + +L R+ P + ++ +
Sbjct: 89 FKLYRLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTE 148
Query: 430 LQ--LKWLRSQMGLVSQE-------PALFATSIKENILFGKEDASMEEVIEAAKASNAHN 480
LQ K L + P + + E + E +EV+E N +
Sbjct: 149 LQNYFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLD 208
Query: 481 FIRQLPQQYDTQVGERGV-QMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESE---- 535
R V ++SGG+ QR+AIA A+++ + DE +S LD
Sbjct: 209 ---------------RDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAA 253
Query: 536 RVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVV 570
RV++E + G+ I++ H L+ + +D + ++
Sbjct: 254 RVIRELAED---GKYVIVVEHDLAVLDYLSDFVHIL 286
|
Length = 591 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 7e-07
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 7/76 (9%)
Query: 1033 TALVGQSGSGKSTIIGLIERFYD-----PLKGDVKIDDRDIRSYHLRS--LRRHIALVSQ 1085
TAL+G SGSGKST++ I R D + G + + +I S + LR+ I +V Q
Sbjct: 34 TALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQ 93
Query: 1086 EPTLFAGTIRENIAYG 1101
+P F +I EN+ YG
Sbjct: 94 QPNPFPMSIYENVVYG 109
|
Length = 252 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 8e-07
Identities = 31/124 (25%), Positives = 61/124 (49%), Gaps = 10/124 (8%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
I +N+ ++ R + +G S+ + G+ A++G +G+GKST++ + P G+V
Sbjct: 2 IRAENLSYSLAGR---RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEV 58
Query: 1062 KIDDRDIRSYHLRSLRRHIALVSQEPTL-FAGTIRENIAYGA------SDEIDESEIVEA 1114
++ + S+ L RH A++ Q +L F T++E + G + ++ I
Sbjct: 59 TLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQ 118
Query: 1115 AKAA 1118
A AA
Sbjct: 119 ALAA 122
|
Length = 259 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 9e-07
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 17/108 (15%)
Query: 1025 IKIEAGKSTALVGQSGSGKSTIIGLIERFYDPL-----KGDVKIDDRDI--RSYHLRSLR 1077
+ I + TA++G SG GKST I + R + + G + D++I +SY + LR
Sbjct: 45 LDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELR 104
Query: 1078 RHIALVSQEPTLFAGTIRENIAYGAS----------DEIDESEIVEAA 1115
++ +V Q+P F +I +N+ YG DEI E + AA
Sbjct: 105 TNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAA 152
|
Length = 271 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (123), Expect = 9e-07
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 1025 IKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLK-----GDVKIDDRDIRSYHLRS--LR 1077
+ I + T +G SG GKST++ + R D +K G V +D+ + +R
Sbjct: 29 VPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVR 88
Query: 1078 RHIALVSQEPTLFAGTIRENIAYG 1101
R+I +V Q+P F+ +I +N+A+G
Sbjct: 89 RYIGMVFQQPNPFSMSIFDNVAFG 112
|
Length = 261 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 52.7 bits (126), Expect = 9e-07
Identities = 72/363 (19%), Positives = 131/363 (36%), Gaps = 39/363 (10%)
Query: 724 FCFLGLAVFTLVINIIQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICS 783
F F GL + L+ I AY G H+ +R + KIL + + D + +
Sbjct: 57 FSFGGLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPIE--EIDRRGAHNLIP 114
Query: 784 RLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWRLALVMIAVQPLVIICFYARR 843
L D + + + + + + A+ I F ++A+ L++ M A+ II A +
Sbjct: 115 LLTHDIDQINAFLFIFPPIAI----ALAIFFFCIAYLAY-LSVPMFAITISAIIIGTAAQ 169
Query: 844 VLLKSMSNKAI-KAQAESSKLA------AEAVSNLRTITAFSSQHRILKMLEKAQQGPRR 896
+L K A+ E A L+ + E A
Sbjct: 170 LLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADL 229
Query: 897 ESIRQSWYAGIGLAFSQSLASCTWALDFWYGGRLIADGY---ISSKALFETFMILVSTGR 953
I + +++ + L G L A I + A+ + L+
Sbjct: 230 HIIEILIFI-----AAENFGQLLFFL--LIGCALFAAAMFASIDAAAISAFVLALLYIKG 282
Query: 954 VIADAGSMTTDIAKGSDAVGSVFAVMDRYTKIEPEDPEGHQ-------PERITGNIELQN 1006
+ S +A+ A + +R+ + EPE ++ +IEL++
Sbjct: 283 PLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKD 342
Query: 1007 VHFAYPARPDVMIFEGFSI-----KIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
VH EGF++ +I G +VG++G GKST+ L Y P +G++
Sbjct: 343 VHMNPK---APEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEI 399
Query: 1062 KID 1064
+D
Sbjct: 400 LLD 402
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 1e-06
Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 13/96 (13%)
Query: 1031 KSTALVGQSGSGKSTIIGLIERFYD-----PLKGDVKIDDRDIRSYHLRS--LRRHIALV 1083
+ TA +G SG GKST + R D +KG++ ID D+ S LR + +V
Sbjct: 32 EVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMV 91
Query: 1084 SQEPTLFAGTIRENIAYG------ASDEIDESEIVE 1113
Q+P F +I +N+AYG A ++ EIVE
Sbjct: 92 FQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVE 127
|
Length = 251 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 1e-06
Identities = 37/140 (26%), Positives = 65/140 (46%), Gaps = 13/140 (9%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
+E+ ++ +Y V S + E G+ T L+G++G+GK+T++ +I P G V
Sbjct: 2 LEVTDLTKSYG--SKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKV 59
Query: 1062 KIDDRDIRSYHLRSLRRHIALVSQEPTLFAG-TIRENIAY-----GASDEIDESEIVEAA 1115
ID D +RR I ++ E L+A T REN+ Y G S + ++ I E +
Sbjct: 60 TIDGVDTVRDPS-FVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELS 118
Query: 1116 KAANAHDFI----AGLNEGY 1131
K +++ + G
Sbjct: 119 KRLQLLEYLDRRVGEFSTGM 138
|
Length = 245 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 1e-06
Identities = 36/124 (29%), Positives = 68/124 (54%), Gaps = 7/124 (5%)
Query: 990 PEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGL 1049
P+ + +T +E++N+ ++ + V + S+ I G+ AL+G SG GKST++ +
Sbjct: 8 PQAKTRKALTPLLEIRNLTKSFDGQHAV---DDVSLTIYKGEIFALLGASGCGKSTLLRM 64
Query: 1050 IERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAG-TIRENIAYG-ASDEID 1107
+ F P G + +D D+ H+ +R I ++ Q LF T+ +NIA+G D++
Sbjct: 65 LAGFEQPTAGQIMLDGVDLS--HVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLP 122
Query: 1108 ESEI 1111
++EI
Sbjct: 123 KAEI 126
|
Length = 377 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 1e-06
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 1024 SIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDI----RSYHLRSLRRH 1079
+ + A TAL G SGSGK+++I +I P +G ++++ R + + L +R
Sbjct: 18 NFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRR 77
Query: 1080 IALVSQEPTLFAG-TIRENIAYGA 1102
I V Q+ LF T+R N+ YG
Sbjct: 78 IGYVFQDARLFPHYTVRGNLRYGM 101
|
Length = 352 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 1e-06
Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 10/120 (8%)
Query: 1016 DVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRS 1075
D + +G + + G LVG +G+GK+T++ I P G V + D+ + R+
Sbjct: 15 DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARA 74
Query: 1076 LRRHIALVSQEPTL-FAGTIRENIAYGAS---------DEIDESEIVEAAKAANAHDFIA 1125
R +A V Q+ +L F +R+ + G + E D + + A + F
Sbjct: 75 ASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFAD 134
|
Length = 402 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 1e-06
Identities = 53/214 (24%), Positives = 100/214 (46%), Gaps = 34/214 (15%)
Query: 358 LGE--VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP 415
LG+ +E + + + + ++ D +P G V ++G +G+GKST+ ++ P
Sbjct: 318 LGDKVIEAENLSKGFGDK---LLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQP 374
Query: 416 LGGEIILDGVSIDKLQLKWLRSQMGLVSQE-PALFAT-SIKENILFGKEDASMEEVIEAA 473
G I + G ++ ++ V Q AL ++ E I G + + + +
Sbjct: 375 DSGTIKI-GETV----------KLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPS 423
Query: 474 KA-SNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDS 532
+A NF Q+ VG Q+SGG++ R+ +A+ + +LLLDE T+ LD
Sbjct: 424 RAYVGRFNFKGSDQQKK---VG----QLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDV 476
Query: 533 ESERVVQEALDKAVVGRTTIIIAH------RLST 560
E+ R ++EAL + ++I+H R++T
Sbjct: 477 ETLRALEEALLE--FAGCAVVISHDRWFLDRIAT 508
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 49.0 bits (118), Expect = 1e-06
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
IEL+N+ Y + + + S+ I G LVG++G+GKST++ LI +P +G V
Sbjct: 1 IELENLSKTYGGKL---LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV 57
Query: 1062 KIDDR 1066
Sbjct: 58 TWGST 62
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (122), Expect = 2e-06
Identities = 34/83 (40%), Positives = 48/83 (57%), Gaps = 5/83 (6%)
Query: 1024 SIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRD---IRSYHLRSLRR-H 1079
S+ IE G+ ++G SGSGKST++ L+ R +P +G V ID D I LR +RR
Sbjct: 48 SLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKK 107
Query: 1080 IALVSQEPTLFAG-TIRENIAYG 1101
IA+V Q L T+ +N A+G
Sbjct: 108 IAMVFQSFALMPHMTVLDNTAFG 130
|
Length = 400 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 2e-06
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 10/105 (9%)
Query: 1002 IELQNV--HFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKG 1059
IE +NV HF + + I+ G+ ++G SGSGKST++ I + + G
Sbjct: 2 IEFKNVSKHFG-----PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSG 56
Query: 1060 DVKIDDRDIRSYHL--RSLRRHIALVSQEPTLFAG-TIRENIAYG 1101
D+ +D + + R +R+ +V Q+ LF T EN+ +G
Sbjct: 57 DLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFG 101
|
Length = 240 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 2e-06
Identities = 44/133 (33%), Positives = 63/133 (47%), Gaps = 25/133 (18%)
Query: 1002 IELQNVHF-AYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYD----- 1055
+E NVHF A DV S+ TA++G SG GKST++ I R +D
Sbjct: 7 LEQLNVHFGKNHAVKDV------SMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSA 60
Query: 1056 PLKGDVKIDDRDI--RSYHLRSLRRHIALVSQEPTLF-AGTIRENIAYG----------A 1102
+ G + +DD DI R S+RR + +V Q+P F A +I +N+ G
Sbjct: 61 RVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSE 120
Query: 1103 SDEIDESEIVEAA 1115
+DEI ES + A
Sbjct: 121 ADEIVESSLKRVA 133
|
Length = 252 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 2e-06
Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 10/107 (9%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYD-----P 1056
I +VH Y +G + + TAL+G SG GKST + + R D
Sbjct: 6 ITSSDVHLFYGKFE---ALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVT 62
Query: 1057 LKGDVKIDDRDIRSYHLRS--LRRHIALVSQEPTLFAGTIRENIAYG 1101
+ G+V + ++I + + LR+ + +V Q+P F +I EN+ YG
Sbjct: 63 ITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFPFSIYENVIYG 109
|
Length = 252 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 49.8 bits (120), Expect = 2e-06
Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 15/108 (13%)
Query: 1003 ELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKST----IIGLIERFYDPLK 1058
E+ N++ Y I G S+++ G+ T ++G++G GK+T ++GL+
Sbjct: 2 EVSNLNVYYGQS---HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLL----PVKS 54
Query: 1059 GDVKIDDRDI--RSYHLRSLRRHIALVSQEPTLFAG-TIRENIAYGAS 1103
G +++D DI H R+ R IA V Q +F T+ EN+ G +
Sbjct: 55 GSIRLDGEDITKLPPHERA-RAGIAYVPQGREIFPRLTVEENLLTGLA 101
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 2e-06
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 20/128 (15%)
Query: 1013 ARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYH 1072
R ++F G S + AG++ L G +GSGK+T++ LI P G +K+D DI
Sbjct: 11 VRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPD 70
Query: 1073 LRSLRRHI----ALVSQEPTLFAGTIRENIA-----YGASDEIDESEIVEAAKAANAHDF 1123
+ ++ A+ +P L T+ EN+ G +E +I A +A
Sbjct: 71 VAEACHYLGHRNAM---KPAL---TVAENLEFWAAFLGG----EELDIAAALEAVGLAP- 119
Query: 1124 IAGLNEGY 1131
+A L GY
Sbjct: 120 LAHLPFGY 127
|
Length = 207 |
| >gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 2e-06
Identities = 32/103 (31%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 499 QMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTII--IAH 556
+++ G+ Q++ IA A+ PR+L+ DE T+A++ ++ + L + T I I+H
Sbjct: 158 ELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISH 217
Query: 557 RLSTIRN-ADVIAVVQDGQVMETGSHDELIQAESGLYT-SLVR 597
L + AD I V+ GQ +ET EL+ YT +L+R
Sbjct: 218 DLQMLSQWADKINVLYCGQTVETAPSKELVTTPHHPYTQALIR 260
|
Length = 330 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 3e-06
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 1035 LVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAG-T 1093
L+G SG GK+T++ L+ F P G + +D D+ ++ RHI +V Q LF T
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVT--NVPPHLRHINMVFQSYALFPHMT 58
Query: 1094 IRENIAYGAS-DEIDESEIVEAAKAA 1118
+ EN+A+G ++ +EI A
Sbjct: 59 VEENVAFGLKMRKVPRAEIKPRVLEA 84
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 3e-06
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 8/89 (8%)
Query: 1021 EGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPL-----KGDVKIDDRDIRSYHLR- 1074
E ++ IE TA +G SG GKST++ + R ++ + +G+V +D D+ +
Sbjct: 21 EDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80
Query: 1075 -SLRRHIALVSQEPTLF-AGTIRENIAYG 1101
++RR I +V Q P F +IR+N+ G
Sbjct: 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAG 109
|
Length = 258 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 3e-06
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 1016 DVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIR---SYH 1072
D + +G S+ I G+ A+VG SGSGKST++ L+ +P G+V + + + S
Sbjct: 17 DTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNE 76
Query: 1073 LRSLR-RHIALVSQEPTLFAG-TIRENIA 1099
LR + + + Q L T EN+A
Sbjct: 77 RAKLRNKKLGFIYQFHHLLPDFTALENVA 105
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 3e-06
Identities = 42/135 (31%), Positives = 64/135 (47%), Gaps = 23/135 (17%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYD-----P 1056
IE N+ Y + +G +KI AL+G SG GKST++ R +
Sbjct: 5 IETVNLRVYYG---SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEAR 61
Query: 1057 LKGDVKIDDRDIRSYHLRSL--RRHIALVSQEPTLFAG-TIRENIAYG--------ASDE 1105
++G+V++ R+I S + + RR + +V Q P F TI +N+A G + E
Sbjct: 62 VEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKE 121
Query: 1106 IDESEIVEAA--KAA 1118
+D E VE A KAA
Sbjct: 122 LD--ERVEWALKKAA 134
|
Length = 253 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (119), Expect = 3e-06
Identities = 33/103 (32%), Positives = 58/103 (56%), Gaps = 5/103 (4%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
I L+NV ++YP + E ++ I+ G+ ++G++GSGKST+ + P KG V
Sbjct: 2 IRLENVSYSYPDGTPAL--ENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKV 59
Query: 1062 KIDDRDIRSY-HLRSLRRHIALVSQEP-TLFAG-TIRENIAYG 1101
+ D + L+ +R+ + +V Q P T F G T+ E++A+G
Sbjct: 60 LVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFG 102
|
Length = 274 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (119), Expect = 3e-06
Identities = 34/127 (26%), Positives = 68/127 (53%), Gaps = 13/127 (10%)
Query: 1002 IELQNVHFAY-PARP--DVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLK 1058
I+ + V++ Y P P +F+ ++++ G TAL+G +GSGKST++ + P +
Sbjct: 2 IKFEKVNYTYQPNSPFASRALFD-IDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTE 60
Query: 1059 GDVKIDDRDIRSY----HLRSLRRHIALVSQEP--TLFAGTIRENIAYGASD---EIDES 1109
G V + D + S ++ +R+ + +V Q P LF T+ +++A+G + +++
Sbjct: 61 GKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKA 120
Query: 1110 EIVEAAK 1116
E + A K
Sbjct: 121 EKIAAEK 127
|
Length = 288 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 3e-06
Identities = 32/104 (30%), Positives = 58/104 (55%), Gaps = 9/104 (8%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
++++ V F R + IF+ S+ + GK TA++G SG GK+T++ LI P G++
Sbjct: 8 VDMRGVSFT---RGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEI 64
Query: 1062 KIDDRDI----RSYHLRSLRRHIALVSQEPTLFAG-TIRENIAY 1100
D +I RS L ++R+ ++++ Q LF + +N+AY
Sbjct: 65 LFDGENIPAMSRS-RLYTVRKRMSMLFQSGALFTDMNVFDNVAY 107
|
Length = 269 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 3e-06
Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 5/99 (5%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
+ +N+ Y R + G S+ ++ G+ L+G +G+GK+T +I P G +
Sbjct: 1 LRAENLSKRYGKRK---VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKI 57
Query: 1062 KIDDRDIRSYHL-RSLRRHIALVSQEPTLFAG-TIRENI 1098
+D +DI + + R I + QE ++F T+ ENI
Sbjct: 58 LLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENI 96
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 3e-06
Identities = 37/100 (37%), Positives = 50/100 (50%), Gaps = 14/100 (14%)
Query: 1033 TALVGQSGSGKSTIIGLIERFYDPL-----KGDVKIDDRDIRSYHLRS--LRRHIALVSQ 1085
TA++G SG GKST + I R D + G + D DI LR+ I +V Q
Sbjct: 68 TAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQ 127
Query: 1086 EPTLFAGTIRENIAY-----GASDEIDESEIVEAA--KAA 1118
+P F +I +NIAY G +D+ EIVE + KAA
Sbjct: 128 KPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAA 167
|
Length = 286 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 3e-06
Identities = 57/242 (23%), Positives = 105/242 (43%), Gaps = 29/242 (11%)
Query: 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALL--QRFYAPLGGEIILDGVSIDKLQLKWL 435
I + L + G+ A++G +GSGKST+ A L + Y GG + G + +L +
Sbjct: 16 ILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPE-D 74
Query: 436 RSQMG--LVSQEPA---------LFATSIKENILFGKEDA----SMEEVIEAAKASNAHN 480
R+ G + Q P T++ + ++ ++++E
Sbjct: 75 RAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEK------- 127
Query: 481 FIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQE 540
I L D V SGG+K+R I + + P + +LDE+ S LD ++ ++V +
Sbjct: 128 -IALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVAD 186
Query: 541 ALDKAVVG-RTTIIIAH--RLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVR 597
++ G R+ II+ H R+ D + V+ G+++++G + Q E Y L
Sbjct: 187 GVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQLEEQGYGWLTE 246
Query: 598 LQ 599
Q
Sbjct: 247 QQ 248
|
Length = 248 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 3e-06
Identities = 56/235 (23%), Positives = 90/235 (38%), Gaps = 61/235 (25%)
Query: 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI 420
+ F F YP P ++FK+ I +A+VG +G GKST++ L+ P G +
Sbjct: 509 ISFSDASFGYPGGP--LLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTV 566
Query: 421 ---------ILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIE 471
+ +D L L S P L+
Sbjct: 567 FRSAKVRMAVFSQHHVDGLDL----------SSNPLLYM--------------------- 595
Query: 472 AAKASNAHNFIRQLPQQYDTQVGERGVQ----------MSGGQKQRIAIARAIIKAPRIL 521
F Q+ +G GV +SGGQK R+A A+ K P IL
Sbjct: 596 ------MRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIL 649
Query: 522 LLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNA-DVIAVVQDGQV 575
LLDE ++ LD ++ + + L + ++++H I + D + VV +G+V
Sbjct: 650 LLDEPSNHLDLDAVEALIQGL--VLFQGGVLMVSHDEHLISGSVDELWVVSEGKV 702
|
Length = 718 |
| >gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 4e-06
Identities = 28/98 (28%), Positives = 53/98 (54%), Gaps = 3/98 (3%)
Query: 499 QMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDK--AVVGRTTIIIAH 556
+++ G+ Q++ IA A+ PR+L+ DE T++++ ++ + L + T ++I+H
Sbjct: 158 ELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISH 217
Query: 557 RLSTIRN-ADVIAVVQDGQVMETGSHDELIQAESGLYT 593
L I AD I V+ GQ +E+ +EL+ YT
Sbjct: 218 DLQMISQWADKINVLYCGQTVESAPSEELVTMPHHPYT 255
|
Length = 330 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 4e-06
Identities = 62/221 (28%), Positives = 96/221 (43%), Gaps = 55/221 (24%)
Query: 385 TIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVS---------------IDK 429
+P G+ V ++G +GSGKST+ L+ P G + + G + I+
Sbjct: 46 EVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQLTGIEN 105
Query: 430 LQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQY 489
++LK L MGL ++ IKE I E+IE A FI Q + Y
Sbjct: 106 IELKGL--MMGLTKEK-------IKEII---------PEIIEFADIG---KFIYQPVKTY 144
Query: 490 DTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDK----A 545
S G K R+ A ++ P IL++DEA S D + ++ LDK
Sbjct: 145 -----------SSGMKSRLGFAISVHINPDILVIDEALSVGD---QTFTKKCLDKMNEFK 190
Query: 546 VVGRTTIIIAHRLSTIRNADVIAV-VQDGQVMETGSHDELI 585
G+T I+H LS +++ A+ + GQV E G E++
Sbjct: 191 EQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVV 231
|
Length = 549 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 5e-06
Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 7/104 (6%)
Query: 987 PEDPEGHQPERITGN---IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGK 1043
PE E + I N IEL+NV + I S ++ G+ A+VG +G+GK
Sbjct: 14 PEPKEPKKRHPIEINEPLIELKNVSVRRNGKK---ILGDLSWQVNPGEHWAIVGPNGAGK 70
Query: 1044 STIIGLIERFYDPLKGDVKIDDRDIRSYHLRS-LRRHIALVSQE 1086
+T++ L+ + P GDV + R LR+ I LVS E
Sbjct: 71 TTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSE 114
|
Length = 257 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 6e-06
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 1019 IFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRR 1078
+ E +++I G TA++G +G GKST++ + R P G V +D I+ Y + + R
Sbjct: 22 VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVAR 81
Query: 1079 HIALVSQEPTLFAG-TIRENIAYG 1101
I L++Q T T++E +A G
Sbjct: 82 RIGLLAQNATTPGDITVQELVARG 105
|
Length = 265 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 7e-06
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Query: 1022 GFSIKIEAGKSTALVGQSGSGKSTI---IGLIERFYDPLKGDVKIDDRDIRSY---HLRS 1075
G S +E GK+ A+VG+SG GKST+ + +IE P G++ +D+ +
Sbjct: 33 GVSFTLERGKTLAVVGESGCGKSTLARLLTMIET---PTGGELYYQGQDLLKADPEAQKL 89
Query: 1076 LRRHIALVSQEP 1087
LR+ I +V Q P
Sbjct: 90 LRQKIQIVFQNP 101
|
Length = 327 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 7e-06
Identities = 45/192 (23%), Positives = 84/192 (43%), Gaps = 38/192 (19%)
Query: 386 IPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQE 445
+P+G + + G +G GKS++ +L + GG + + ++ V Q
Sbjct: 475 VPSGNNLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQR 523
Query: 446 PALFATSIKENILF----------GKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGE 495
P + ++++ I++ G D +E++++ QL + + G
Sbjct: 524 PYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNV----------QLTHILEREGGW 573
Query: 496 RGVQ-----MSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRT 550
VQ +SGG+KQRIA+AR P+ +LDE TSA+ + E + + G T
Sbjct: 574 SAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE--FGIT 631
Query: 551 TIIIAHRLSTIR 562
++HR S +
Sbjct: 632 LFSVSHRKSLWK 643
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-05
Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
IE +++ ++Y + A++G +G+GKST+ P G V
Sbjct: 4 IETRDLCYSY--SGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSV 61
Query: 1062 KIDDRDIRSYHLRSLRRHIALVSQEP--TLFAGTIRENIAYG 1101
I I ++R +R+ + LV Q P +F+ T+ ++IA+G
Sbjct: 62 LIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFG 103
|
Length = 277 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 1e-05
Identities = 34/119 (28%), Positives = 51/119 (42%), Gaps = 21/119 (17%)
Query: 1004 LQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKI 1063
+ + + S ++ G+ L+G++G+GKST++ L+ Y P G V +
Sbjct: 22 KLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTV 81
Query: 1064 DDRDIRSYHLRSLRRHIAL-VSQEPTLFAGTIRENI-----AYGAS-DEIDES--EIVE 1113
R + SL + L P L T RENI G S EIDE EI+E
Sbjct: 82 RGR------VSSL---LGLGGGFNPEL---TGRENIYLNGRLLGLSRKEIDEKIDEIIE 128
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 1e-05
Identities = 42/192 (21%), Positives = 85/192 (44%), Gaps = 34/192 (17%)
Query: 382 FCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGL 441
C+ + G+ L+G +G+GK+T +L G+ + G SI + + MG
Sbjct: 1958 LCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSI-LTNISDVHQNMGY 2016
Query: 442 VSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQ-- 499
Q A+ +++L G+E + + +R +P + +V +Q
Sbjct: 2017 CPQFDAI------DDLLTGREHLYL------------YARLRGVPAEEIEKVANWSIQSL 2058
Query: 500 ------------MSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV- 546
SGG K++++ A A+I P ++LLDE T+ +D ++ R++ + +
Sbjct: 2059 GLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIR 2118
Query: 547 VGRTTIIIAHRL 558
GR ++ +H +
Sbjct: 2119 EGRAVVLTSHSM 2130
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-05
Identities = 56/213 (26%), Positives = 92/213 (43%), Gaps = 36/213 (16%)
Query: 379 FKDFCLTIPA-GKTVALVGGSGSGKSTVIALLQ--------RFYAPLGGEIILDGVSIDK 429
FK L +P G+ + LVG +G GKST + +L +F P + ILD +
Sbjct: 15 FKLHRLPVPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSE 74
Query: 430 LQ--LKWLRSQMGLVSQEPA---LFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQ 484
LQ L V +P L ++K GK V E K + + +
Sbjct: 75 LQNYFTKLLEGDVKVIVKPQYVDLIPKAVK-----GK-------VGELLKKKDERGKLDE 122
Query: 485 LPQQYD-TQVGERGV-QMSGGQKQRIAIARAIIKAPRILLLDEATSALDS----ESERVV 538
L Q + V +R + Q+SGG+ QR+AIA A+ + DE +S LD + R++
Sbjct: 123 LVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLI 182
Query: 539 QEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVV 570
+E + +++ H L+ + +D I +
Sbjct: 183 RELAED---DNYVLVVEHDLAVLDYLSDYIHCL 212
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-05
Identities = 58/220 (26%), Positives = 94/220 (42%), Gaps = 45/220 (20%)
Query: 381 DFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDG-VSIDKLQLKWLRSQM 439
D L G + LVG +GSGKST+ ++ +P G++ +G VS+ +
Sbjct: 42 DISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSV-------IAISA 94
Query: 440 GLVSQEPALFATSIKENILFG--------KE-DASMEEVIEAAKASNAHNFIRQLPQQYD 490
GL Q + ENI F KE A ++IE S FI Q ++Y
Sbjct: 95 GLSGQLTGI------ENIEFKMLCMGFKRKEIKAMTPKIIE---FSELGEFIYQPVKKY- 144
Query: 491 TQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDK----AV 546
S G + ++ + I P IL++DEA S D + Q+ LDK
Sbjct: 145 ----------SSGMRAKLGFSINITVNPDILVIDEALSVGD---QTFAQKCLDKIYEFKE 191
Query: 547 VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELI 585
+T ++H L +R IA ++ G++ + G D+++
Sbjct: 192 QNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVL 231
|
Length = 264 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 2e-05
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 1024 SIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRS----YHLRSLRRH 1079
+ TA+ G+SGSGK+T+I LI P +G++ ++ R + L +R
Sbjct: 17 DFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRR 76
Query: 1080 IALVSQEPTLFAG-TIRENIAYGASD 1104
I V QE LF ++R N+ YG
Sbjct: 77 IGYVFQEARLFPHLSVRGNLRYGMKR 102
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGD- 1060
+E ++V F YP S I G TAL+G +GSGKSTI LI P
Sbjct: 6 VEFKHVSFTYPDSK-KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPN 64
Query: 1061 --VKIDDRDIRSYHLRSLRRHIALVSQEP-TLFAG-TIRENIAYG 1101
+ +D + + + +R + +V Q P F G T+ +++A+G
Sbjct: 65 SKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFG 109
|
Length = 282 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 2e-05
Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 20/136 (14%)
Query: 982 YTKIEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGS 1041
+ KI+ + QP G+ L +F+ P + + S K+E G+ A+ G +GS
Sbjct: 410 FEKIKQNNKARKQP---NGDDGLFFSNFSLYVTP---VLKNISFKLEKGQLLAVAGSTGS 463
Query: 1042 GKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYG 1101
GKS+++ +I +P +G +K R I+ Q + GTI++NI +G
Sbjct: 464 GKSSLLMMIMGELEPSEGKIKHSGR-------------ISFSPQTSWIMPGTIKDNIIFG 510
Query: 1102 AS-DEIDESEIVEAAK 1116
S DE + +++A +
Sbjct: 511 LSYDEYRYTSVIKACQ 526
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (111), Expect = 2e-05
Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 12/120 (10%)
Query: 1006 NVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKID- 1064
N+ Y D I + +IKI ++G SGSGKST++ ++ R + +K+D
Sbjct: 12 NISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDG 71
Query: 1065 -----DRDIRSYHLRSLRRHIALVSQEPTLFAG-TIRENIAY-----GASDEIDESEIVE 1113
+DI LR+ + +V Q+P F +I +NIAY G ++ + +IVE
Sbjct: 72 KVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVE 131
|
Length = 257 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 2e-05
Identities = 53/219 (24%), Positives = 91/219 (41%), Gaps = 38/219 (17%)
Query: 379 FKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438
F++ L + AG+ + L G G+G++ + L GG I+L+G I+ L R
Sbjct: 279 FRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTA-QRLA 337
Query: 439 MGLV-----SQEPALF----------ATSIKENILF---GKEDASMEEVIEA--AKASNA 478
GLV Q L+ A + + +E+A +E A K ++A
Sbjct: 338 RGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHA 397
Query: 479 HNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALD-SESERV 537
R L SGG +Q++ IA+ + +P++L++DE T +D S +
Sbjct: 398 EQAARTL---------------SGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDI 442
Query: 538 VQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQV 575
Q A + I+ L I AD + V+ G++
Sbjct: 443 YQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEI 481
|
Length = 510 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 2e-05
Identities = 35/109 (32%), Positives = 54/109 (49%), Gaps = 17/109 (15%)
Query: 1024 SIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPL-----KGDVKIDDRDI--RSYHLRSL 1076
S+ IE TAL+G SG GKST + I R D + +G++ + +I + ++ +L
Sbjct: 41 SMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNL 100
Query: 1077 RRHIALVSQEPTLFAGTIRENIAYGAS----------DEIDESEIVEAA 1115
RR I +V Q+P F +I NI + DEI E + +AA
Sbjct: 101 RREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAA 149
|
Length = 268 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 2e-05
Identities = 26/123 (21%), Positives = 47/123 (38%), Gaps = 25/123 (20%)
Query: 1004 LQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDP---LKGD 1060
L+NV P + + I G+ L+G SG GKST++ + G+
Sbjct: 5 LKNVSLRLPGS---CLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGE 61
Query: 1061 VKIDDRDIRSYHLRSLRRHIALVSQEPTLF-----------------AGTIRENIAYGAS 1103
+ ++++ + L + +R I ++ Q+ LF G R N A A
Sbjct: 62 LWLNEQRLDM--LPAAQRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAAL 119
Query: 1104 DEI 1106
+
Sbjct: 120 ERS 122
|
Length = 213 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 2e-05
Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 5/89 (5%)
Query: 1002 IELQNVHFAYPA-RPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGD 1060
+EL+++ +YP+ V + +G S+ I AG+ A+VG SGSGKST++ ++ P G
Sbjct: 5 LELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGT 64
Query: 1061 VKIDDRDIRSYH---LRSLRR-HIALVSQ 1085
++ +D+ + L LRR H + Q
Sbjct: 65 YRVAGQDVATLDADALAQLRREHFGFIFQ 93
|
Length = 648 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 2e-05
Identities = 53/182 (29%), Positives = 91/182 (50%), Gaps = 14/182 (7%)
Query: 389 GKTVALVGGSGSGKSTVI-ALLQRFYAPLGGEIILDG---VSIDKLQLKWLRSQMGLVSQ 444
G AL+G SG+GK+T++ L +R + +I G V+ L + RS +G V Q
Sbjct: 789 GTLTALMGASGAGKTTLLNVLAER----VTTGVITGGDRLVNGRPLDSSFQRS-IGYVQQ 843
Query: 445 EPALFATS-IKENILFGKEDASMEEVIEAAKASNAHNFIRQLP-QQY-DTQVGERGVQMS 501
+ TS ++E++ F + V ++ K I+ L + Y D VG G ++
Sbjct: 844 QDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLN 903
Query: 502 GGQKQRIAIARAIIKAPRILL-LDEATSALDSESERVVQEALDK-AVVGRTTIIIAHRLS 559
Q++R+ I ++ P++LL LDE TS LDS++ + + + K A G+ + H+ S
Sbjct: 904 VEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPS 963
Query: 560 TI 561
I
Sbjct: 964 AI 965
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 2e-05
Identities = 54/240 (22%), Positives = 91/240 (37%), Gaps = 91/240 (37%)
Query: 379 FKDFCLTIP-AGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRS 437
FK + L IP GK ++G +G GK+T + +L GE+I
Sbjct: 88 FKLYGLPIPKEGKVTGILGPNGIGKTTAVKIL-------SGELI---------------- 124
Query: 438 QMGLVSQEPALFATSIKENILFGK--EDASMEEVIEAAKASNAHNFIRQL---------- 485
P L G E+ S +EV++ + + N+ ++L
Sbjct: 125 --------PNL-----------GDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHK 165
Query: 486 PQQYD--------------TQVGERGV-------------------QMSGGQKQRIAIAR 512
PQ D +V ERG ++SGG+ QR+AIA
Sbjct: 166 PQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAA 225
Query: 513 AIIKAPRILLLDEATSALDSESERV-VQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVV 570
A+++ DE TS LD +R+ V + + G+ +++ H L+ + AD + +
Sbjct: 226 ALLRDADFYFFDEPTSYLDIR-QRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIA 284
|
Length = 590 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 4e-05
Identities = 46/169 (27%), Positives = 74/169 (43%), Gaps = 24/169 (14%)
Query: 372 SRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQ 431
SR E +F + AG+ + + G +G+GK+T++ +L G+I +DG + +
Sbjct: 20 SRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGD 79
Query: 432 LKWLRSQ-MGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYD 490
RS+ M + P L K D S E + + +Q+P
Sbjct: 80 ----RSRFMAYLGHLPGL------------KADLSTLENLHFLCGLHGRR-AKQMPGSAL 122
Query: 491 TQVGERGV------QMSGGQKQRIAIARAIIKAPRILLLDEATSALDSE 533
VG G Q+S GQK+R+A+AR + + LLDE + LD E
Sbjct: 123 AIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLE 171
|
Length = 214 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 6e-05
Identities = 27/107 (25%), Positives = 52/107 (48%), Gaps = 2/107 (1%)
Query: 1013 ARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYH 1072
+R + M+FEG S + AG++ + G +G GK+T++ ++ P G+V+ + + +
Sbjct: 9 SRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTAL-AEQ 67
Query: 1073 LRSLRRHIALVSQEPTLFAG-TIRENIAYGASDEIDESEIVEAAKAA 1118
R+I + P L + EN+ + A+ +E A AA
Sbjct: 68 RDEPHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAA 114
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (112), Expect = 6e-05
Identities = 46/197 (23%), Positives = 82/197 (41%), Gaps = 43/197 (21%)
Query: 379 FKDFCLTIPAGK-----TVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLK 433
DF L + G+ + +VG +G GK+T LL G + D +D +LK
Sbjct: 350 LGDFSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLL-------AGVLKPDEGEVDP-ELK 401
Query: 434 WLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIR-------QLP 486
S K + D ++E+++ + ++ + QL
Sbjct: 402 -----------------ISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLE 444
Query: 487 QQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV 546
+ D V + +SGG+ QR+AIA + + + LLDE ++ LD E V +A+ +
Sbjct: 445 RLLDKNVKD----LSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIA 500
Query: 547 VGR--TTIIIAHRLSTI 561
R T +++ H + I
Sbjct: 501 EEREATALVVDHDIYMI 517
|
Length = 590 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 7e-05
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 9/92 (9%)
Query: 1019 IFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYH------ 1072
+ G ++++ G+ A++G SGSGK+T++ I P G +++ D I +
Sbjct: 18 VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQK 77
Query: 1073 --LRSLRRHIALVSQEPTLFAG-TIRENIAYG 1101
+R LR+H+ V Q LF T+ ENI G
Sbjct: 78 GLIRQLRQHVGFVFQNFNLFPHRTVLENIIEG 109
|
Length = 250 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (107), Expect = 7e-05
Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 15/121 (12%)
Query: 996 ERITGNIELQNVHFAYPARPDVMIFEGF---------SIKIEAGKSTALVGQSGSGKSTI 1046
ER+ G +V A PA V + GF S+ A T+L+G +GSGK+T
Sbjct: 4 ERLGGQSGAADVDAAAPAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTF 63
Query: 1047 IGLIERFYDPL-----KGDVKIDDRDIRSYH-LRSLRRHIALVSQEPTLFAGTIRENIAY 1100
+ + R D + GDV + R I +Y + RR + ++ Q P F +I +N+
Sbjct: 64 LRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFPMSIMDNVLA 123
Query: 1101 G 1101
G
Sbjct: 124 G 124
|
Length = 276 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 7e-05
Identities = 26/93 (27%), Positives = 53/93 (56%), Gaps = 6/93 (6%)
Query: 1015 PDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDP---LKGDVKIDDRDIRSY 1071
V + S+K+ AG+ +L G++G+GKST++ ++ Y P +G++ + ++++
Sbjct: 16 GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVY-PHGTYEGEIIFEGEELQAS 74
Query: 1072 HLR-SLRRHIALVSQEPTLFAG-TIRENIAYGA 1102
++R + R IA++ QE L ++ ENI G
Sbjct: 75 NIRDTERAGIAIIHQELALVKELSVLENIFLGN 107
|
Length = 506 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 7e-05
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 1024 SIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALV 1083
S+ I +G+ AL+G SGSGK+T++ +I G ++ D+ H R R + V
Sbjct: 22 SLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARD--RKVGFV 79
Query: 1084 SQEPTLFAG-TIRENIAYGAS 1103
Q LF T+ +NIA+G +
Sbjct: 80 FQHYALFRHMTVFDNIAFGLT 100
|
Length = 353 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 7e-05
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI 420
+E + + Y + + KD LTI G + LVG +G+GKST++ L+ P G +
Sbjct: 1 IELENLSKTYGGKL---LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV 57
Query: 421 ILD 423
Sbjct: 58 TWG 60
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 8e-05
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 1013 ARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDI---- 1068
+ S+ +++G++ AL+G+SG GKST+ L+ P +G+V +
Sbjct: 21 KHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLN 80
Query: 1069 RSYHLRSLRRHIALVSQEP 1087
R+ ++ RR I +V Q+
Sbjct: 81 RAQR-KAFRRDIQMVFQDS 98
|
Length = 268 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 8e-05
Identities = 44/202 (21%), Positives = 86/202 (42%), Gaps = 56/202 (27%)
Query: 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI 420
+E + + + + P +FK+ L + AG+ +A++G +G GK+T++ L P G +
Sbjct: 320 LEVENLTKGFDNGP---LFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTV 376
Query: 421 ILDGVSIDKLQLKWL-RSQMGLVSQEPAL-FATSIKENILFGKEDASMEEVIEAAKASNA 478
KW + +G +Q+ A F D ++ +
Sbjct: 377 ------------KWSENANIGYYAQDHAYDFE-----------NDLTLFD---------- 403
Query: 479 HNFIRQLPQQYDTQVGERGV----------------QMSGGQKQRIAIARAIIKAPRILL 522
++ Q Q+ D + RG +SGG+K R+ + +++ P +L+
Sbjct: 404 --WMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLV 461
Query: 523 LDEATSALDSESERVVQEALDK 544
+DE T+ +D ES + AL+K
Sbjct: 462 MDEPTNHMDMESIESLNMALEK 483
|
Length = 530 |
| >gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 8e-05
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 11/103 (10%)
Query: 501 SGGQKQRIAIARAIIKA---PRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAH 556
SGG+ QR+ +A+ + K + +LDE T+ L + + + E L + V G T I+I H
Sbjct: 824 SGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEH 883
Query: 557 RLSTIRNADVI------AVVQDGQVMETGSHDELIQAESGLYT 593
L I+ AD I G+++ +G+ +E+ + + YT
Sbjct: 884 NLDVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAKVK-ASYT 925
|
Length = 935 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 9e-05
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 1022 GFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDP----LKGDVKIDDRDIRSYHLRSLR 1077
++ ++ G+ ALVG+SGSGKS I P G++ +D R + +R
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRG-- 61
Query: 1078 RHIALVSQEP 1087
RHIA + Q P
Sbjct: 62 RHIATIMQNP 71
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 9e-05
Identities = 20/66 (30%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 1024 SIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDI--RSYHLRSLRRHIA 1081
S + G++ A++G++GSGKST+ ++ +P G++ I+D + Y RS + I
Sbjct: 33 SFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRS--KRIR 90
Query: 1082 LVSQEP 1087
++ Q+P
Sbjct: 91 MIFQDP 96
|
Length = 267 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 1e-04
Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 9/81 (11%)
Query: 1016 DVMIFEGFSIKIEAGKSTALVGQSGSGKS----TIIGLI-ERFYDPLKGDVKIDDRDIRS 1070
V +G S IEAG++ ALVG+SGSGKS +I+GL+ G + D D+ +
Sbjct: 22 TVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLA 81
Query: 1071 YHLRSLRR----HIALVSQEP 1087
R LR I ++ QEP
Sbjct: 82 ASERQLRGVRGNKIGMIFQEP 102
|
Length = 534 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 1e-04
Identities = 34/140 (24%), Positives = 64/140 (45%), Gaps = 25/140 (17%)
Query: 1002 IELQNVHFAY---------PARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIER 1052
I+ +NV + Y A DV +++++ G+ ++G++GSGKSTI +
Sbjct: 5 IKCKNVSYKYESNEESTEKLALDDV------NLEVKKGEFLVILGRNGSGKSTIAKHMNA 58
Query: 1053 FYDPLKGDVKIDDRDIRSY-HLRSLRRHIALVSQEP--TLFAGTIRENIAYG------AS 1103
P +G V +D D +L +R +V Q P + A + E++A+G
Sbjct: 59 LLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPP 118
Query: 1104 DEIDESEIVEAAKAANAHDF 1123
+EI + E+ K +++
Sbjct: 119 EEI-RERVDESLKKVGMYEY 137
|
Length = 280 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 1e-04
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Query: 1015 PDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV----KIDDRDIRS 1070
+ +I+I G+ T +VGQ G GKS+++ I L+G V K +
Sbjct: 12 SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFE 71
Query: 1071 YHLRSLRRHIALVSQEPTLFAGTIRENIAYGA 1102
R +A +Q+P L T+ ENI +G+
Sbjct: 72 ATRSRNRYSVAYAAQKPWLLNATVEENITFGS 103
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 1e-04
Identities = 31/108 (28%), Positives = 55/108 (50%), Gaps = 12/108 (11%)
Query: 1003 ELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYD-----PL 1057
E+ ++F Y + ++ + + TAL+G SG GKST + R +D
Sbjct: 18 EVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHY 74
Query: 1058 KGDVKI--DDRDIRSYHLRSL--RRHIALVSQEPTLFAGTIRENIAYG 1101
+G++ + D+ +I S + + R I++V Q+P F +I EN+AYG
Sbjct: 75 EGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYG 122
|
Length = 265 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 1e-04
Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 17/110 (15%)
Query: 1008 HFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRD 1067
+ P + + ++KIE G+ A+ G +GSGK++++ LI +P +G +K R
Sbjct: 44 NLCLVGAP---VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGR- 99
Query: 1068 IRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGAS-DEIDESEIVEAAK 1116
I+ SQ + GTI+ENI +G S DE +V+A +
Sbjct: 100 ------------ISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQ 137
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 1e-04
Identities = 36/124 (29%), Positives = 54/124 (43%), Gaps = 21/124 (16%)
Query: 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGD 1060
L+ + + + S +I G+ ++G +G+GKST++ LI Y P G
Sbjct: 24 KKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGK 83
Query: 1061 VKIDDRDIRSYHLRSLRRHIAL-VSQEPTLFAGTIRENIA-----YGAS-DEIDES--EI 1111
VK+ + + L I L +P L T RENI G + EIDE EI
Sbjct: 84 VKVTGK------VAPL---IELGAGFDPEL---TGRENIYLRGLILGLTRKEIDEKVDEI 131
Query: 1112 VEAA 1115
+E A
Sbjct: 132 IEFA 135
|
Length = 249 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 1e-04
Identities = 51/191 (26%), Positives = 91/191 (47%), Gaps = 36/191 (18%)
Query: 389 GKTVALVGGSGSGKSTVIALL--QRFYAPLGGEIILDGVSIDKLQLKWLR-----SQMGL 441
G AL+G SG+GK+T++ +L ++ + G+I + G K Q + R Q +
Sbjct: 906 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFP--KKQETFARISGYCEQNDI 963
Query: 442 VSQEPALFATSIKENILF----------GKEDASM--EEVIEAAKASNAHNFIRQLPQQY 489
S + +++E++++ KE+ M +EV+E + N + I LP
Sbjct: 964 HSPQ-----VTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLP--- 1015
Query: 490 DTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VG 548
G G +S Q++R+ IA ++ P I+ +DE TS LD+ + +V + V G
Sbjct: 1016 ----GVTG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1069
Query: 549 RTTIIIAHRLS 559
RT + H+ S
Sbjct: 1070 RTVVCTIHQPS 1080
|
Length = 1470 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 498 VQMSGGQKQRIAIARAIIKA---PRIL-LLDEATSALDSESERVVQEALDK-AVVGRTTI 552
+Q+SGG+K+ A+A + A PR L +LDE LD + + EA+ + V G I
Sbjct: 76 LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVI 135
Query: 553 IIAHRLSTIRNADVIA 568
+I H AD +
Sbjct: 136 VITHLPELAELADKLI 151
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 2e-04
Identities = 34/105 (32%), Positives = 57/105 (54%), Gaps = 10/105 (9%)
Query: 114 RMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGC 173
++R + A LRQ + FD ++I+ V+ND+ VI+D + + +A+L G
Sbjct: 99 QLRTDVMDAALRQPLSAFDTQ--PVGQLISRVTNDTEVIRDLYVTVVATVLRSAAL-IGA 155
Query: 174 YLVAFLML-WRLAIVG---FPFVVLLVIPGLMYGRTLMSLARKMR 214
LVA L WR+A+V FP VL+V+ ++Y R + R++R
Sbjct: 156 MLVAMFSLDWRMALVAIMIFP-AVLVVM--VIYQRYSTPIVRRVR 197
|
Length = 592 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 2e-04
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 10/74 (13%)
Query: 1023 FSIKIEAGKSTALVGQSGSGKSTII----GLIERFYDPLKGDVKIDDRDIRSYHLRSLRR 1078
S ++ AG+ LVG +G+GKST++ GL+ P G ++ + + ++ L R
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-----PGSGSIQFAGQPLEAWSAAELAR 69
Query: 1079 HIA-LVSQEPTLFA 1091
H A L Q+ FA
Sbjct: 70 HRAYLSQQQTPPFA 83
|
Length = 248 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 2e-04
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 5/47 (10%)
Query: 489 YDTQVGE---RGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDS 532
+T+VG RGV SGG+++R++IA A + +I D AT LDS
Sbjct: 198 RNTKVGNDFVRGV--SGGERKRVSIAEASLGGAKIQCWDNATRGLDS 242
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 43/192 (22%), Positives = 73/192 (38%), Gaps = 57/192 (29%)
Query: 384 LTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVS 443
++IP V + G SGSGKST ++ +G
Sbjct: 16 VSIPLNVLVVVTGVSGSGKST---------------LVNEG------------------- 41
Query: 444 QEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVG----ERGVQ 499
S K ++ S ++I FI QL D +G + +
Sbjct: 42 -----LYASGKARLISFLPKFSRNKLI----------FIDQLQFLIDVGLGYLTLGQKLS 86
Query: 500 -MSGGQKQRIAIARAIIKAPR--ILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIA 555
+SGG+ QR+ +A + P + +LDE ++ L + + E + + +G T I+I
Sbjct: 87 TLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIE 146
Query: 556 HRLSTIRNADVI 567
H L + +AD I
Sbjct: 147 HNLDVLSSADWI 158
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 3e-04
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 14/94 (14%)
Query: 1019 IFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIR--------- 1069
+ +G S++ AG +++G SGSGKST + I P +G + ++ + I
Sbjct: 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79
Query: 1070 ----SYHLRSLRRHIALVSQEPTLFAG-TIRENI 1098
LR LR + +V Q L++ T+ EN+
Sbjct: 80 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENV 113
|
Length = 257 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 3e-04
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 1019 IFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDI---RSYHLRS 1075
+ S+ IE G++ L+G+SG GKST+ L+ P +G V +D+ R+
Sbjct: 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRA 85
Query: 1076 LRRHIALVSQE 1086
RR + LV Q+
Sbjct: 86 FRRDVQLVFQD 96
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 3e-04
Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 18/104 (17%)
Query: 1016 DVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDD---------R 1066
+++ S E K ++G SGSGKST++ G +++ D
Sbjct: 38 ELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNH 97
Query: 1067 DIRSYHL-------RSLRRHIALVSQEP--TLFAGTIRENIAYG 1101
++ + + LRR +++V Q P LF TI ++I +G
Sbjct: 98 ELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFG 141
|
Length = 320 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 3e-04
Identities = 40/159 (25%), Positives = 71/159 (44%), Gaps = 32/159 (20%)
Query: 1002 IELQNVHFAYPARPDVMI--FEGFSIKIEAGKSTALVGQSGSGKSTII-----------G 1048
I+++N+ + + + + S++I G+ A++GQ+GSGK+T I G
Sbjct: 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTG 62
Query: 1049 LIERFYDPLKGDVKIDDRDIRSYHL-------------RSLRRHIALVSQ--EPTLFAGT 1093
IE + K K +++ L + +RR + +V Q E LF T
Sbjct: 63 TIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQT 122
Query: 1094 IRENIAYGA-SDEIDESEIVEAAKAANAHDFIAGLNEGY 1131
I ++I +G S + + EA K A + + GL+E Y
Sbjct: 123 IEKDIIFGPVSMGVSKE---EAKKRAAKYIELVGLDESY 158
|
Length = 305 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 3e-04
Identities = 22/79 (27%), Positives = 44/79 (55%), Gaps = 7/79 (8%)
Query: 498 VQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSE----SERVVQEALDKAVVGRTTII 553
+ +SGG+ QR+AIA A+++ L DE ++ LD E + R ++ ++ +T ++
Sbjct: 70 IDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEG--KKTALV 127
Query: 554 IAHRLSTIRN-ADVIAVVQ 571
+ H L+ + +D I V +
Sbjct: 128 VEHDLAVLDYLSDRIHVFE 146
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 4e-04
Identities = 38/153 (24%), Positives = 70/153 (45%), Gaps = 21/153 (13%)
Query: 985 IEPEDPEGHQ----PERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSG 1040
+E GH+ ER +++ F + P V++ + S+ + GK T ++G +G
Sbjct: 639 VEGGTGGGHEATPTSERSAKTPKMKTDDF-FELEPKVLLRD-VSVSVPRGKLTVVLGATG 696
Query: 1041 SGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAY 1100
SGKST++ + ++ +G V + R IA V Q+ + T+R NI +
Sbjct: 697 SGKSTLLQSLLSQFEISEGRVWAE-------------RSIAYVPQQAWIMNATVRGNILF 743
Query: 1101 GASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133
DE D + + +A + + +A L G +T
Sbjct: 744 --FDEEDAARLADAVRVSQLEADLAQLGGGLET 774
|
Length = 1560 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 4e-04
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 9/95 (9%)
Query: 1016 DVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRD--IRSYH- 1072
V+ S+ IE G+ L+G SGSGKST++ + +G V + D D + +
Sbjct: 36 LVLGVHNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANC 95
Query: 1073 ----LRSLRRH-IALVSQEPTLFAG-TIRENIAYG 1101
LR LR H +++V Q+ L T+ EN+A+G
Sbjct: 96 DAATLRRLRTHRVSMVFQQFALLPWRTVEENVAFG 130
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 4e-04
Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 16/99 (16%)
Query: 500 MSGGQKQRIAIARAIIK---APRILLLDEATSALDSESER----VVQEALDKAVVGRTTI 552
+SGG+ QRI +A+ + K + +LDE T+ L + + V+Q +DK G T +
Sbjct: 830 LSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDK---GNTVV 886
Query: 553 IIAHRLSTIRNADVI------AVVQDGQVMETGSHDELI 585
+I H L I+ AD I G V+ +G+ +E+
Sbjct: 887 VIEHNLDVIKTADYIIDLGPEGGDGGGTVVASGTPEEVA 925
|
This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 5e-04
Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 1021 EGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHI 1080
+ S+ ++ G+ +G +G+GK+T + +I P G++ D + + R I
Sbjct: 17 DDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQ--KNIEALRRI 74
Query: 1081 ALVSQEPTLFAG-TIRENIAYGA 1102
+ + P + T REN+ A
Sbjct: 75 GALIEAPGFYPNLTARENLRLLA 97
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 5e-04
Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 3/101 (2%)
Query: 1002 IELQNVHFAY-PARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGD 1060
I + + + V +G S ++ G+ T L+G +G+GK+T + ++ +P G
Sbjct: 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGF 61
Query: 1061 VKIDDRDIRSYHLRSLRRHIALVSQEPTLFAG-TIRENIAY 1100
+D D+ RR + VS L+ T REN+ Y
Sbjct: 62 ATVDGFDV-VKEPAEARRRLGFVSDSTGLYDRLTARENLEY 101
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 5e-04
Identities = 23/90 (25%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 1016 DVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFY--DPLKGDVKIDDRDIRSYHL 1073
V +G +++ G+ L G++G+GKST++ ++ Y G++ +++ ++
Sbjct: 13 GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNI 72
Query: 1074 RSL-RRHIALVSQEPTLFAG-TIRENIAYG 1101
R R I ++ QE TL ++ ENI G
Sbjct: 73 RDTERAGIVIIHQELTLVPELSVAENIFLG 102
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 5e-04
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Query: 1013 ARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLK---GDVKIDDRDIR 1069
I S+ +E+G+ A++G SGSGK+T++ I + G + + + +
Sbjct: 16 WNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK 75
Query: 1070 SYHLRSLRRHIALVSQEPTLFAG-TIRENIAYGA 1102
++ +A V Q+ L G T+RE + Y A
Sbjct: 76 PD---QFQKCVAYVRQDDILLPGLTVRETLTYTA 106
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 5e-04
Identities = 22/67 (32%), Positives = 40/67 (59%), Gaps = 4/67 (5%)
Query: 1024 SIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIR--SYHLRSLRRHIA 1081
S + G++ A++G++GSGKST+ ++ +P G++ IDD + Y RS R I
Sbjct: 33 SFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQR--IR 90
Query: 1082 LVSQEPT 1088
++ Q+P+
Sbjct: 91 MIFQDPS 97
|
Length = 267 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 5e-04
Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Query: 1030 GKSTALVGQSGSGKSTIIGLIERFYDPLKGDVK-IDDRDIRSYHLRSLRRHIALVSQEPT 1088
G+ +VG GSGK+T+ + R P G V ID DI L L I +
Sbjct: 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASG 61
Query: 1089 LFAGTIR 1095
+R
Sbjct: 62 SGELRLR 68
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 6e-04
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 1024 SIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRD---IRSYHLRSLRRHI 1080
S+ + AG+ ++G SG+GKST+I + P G V +D +D + + L RR I
Sbjct: 25 SLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQI 84
Query: 1081 ALVSQEPTLFAG-TIRENIA 1099
++ Q L + T+ N+A
Sbjct: 85 GMIFQHFNLLSSRTVFGNVA 104
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 6e-04
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 14/92 (15%)
Query: 1005 QNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKST----IIGLIERFYDPLKGD 1060
+N+ AY R + E S+ + +G+ L+G +G+GK+T ++G++ R G+
Sbjct: 7 KNLAKAYKGR---RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD----AGN 59
Query: 1061 VKIDDRDIR--SYHLRSLRRHIALVSQEPTLF 1090
+ IDD DI H R+ RR I + QE ++F
Sbjct: 60 IIIDDEDISLLPLHARA-RRGIGYLPQEASIF 90
|
Length = 241 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 7e-04
Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 22/146 (15%)
Query: 1003 ELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKST----IIGLIERFYDPLK 1058
E++++H I +G ++ ++ G+ A++G +GSGKST I+G + Y+ +
Sbjct: 5 EIKDLH--VEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPK--YEVTE 60
Query: 1059 GDVKIDDRDIR--SYHLRSLRRHIALVSQEPTLFAG-TIRE------NIAYGASDEIDE- 1108
G++ D DI S R+ R I L Q P G T + N GA + E
Sbjct: 61 GEILFDGEDILELSPDERA-RAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEF 119
Query: 1109 -SEIVEAAKAANAHDFIA--GLNEGY 1131
E+ E A+ + +NEG+
Sbjct: 120 IKELKEKAELLGLDEEFLERYVNEGF 145
|
Length = 251 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 7e-04
Identities = 50/186 (26%), Positives = 80/186 (43%), Gaps = 39/186 (20%)
Query: 381 DFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLG-----------GEIILDGVS--- 426
D +T+ G+ LVG +G+GK+T + + +A G E++ D +
Sbjct: 195 DASVTLAFGRHYGLVGRNGTGKTTFLRYMA-MHAIDGIPKNCQILHVEQEVVGDDTTALQ 253
Query: 427 ------IDKLQLKWLRSQMGLVSQ-----EPALFATSIKENILFGKEDASME-------- 467
I++ QL L + LV+Q N +DA +
Sbjct: 254 CVLNTDIERTQL--LEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKR 311
Query: 468 -EVIEAAKA-SNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDE 525
E+I+A A + A + + L + QV + SGG + RIA+ARA+ P +LLLDE
Sbjct: 312 LELIDAYTAEARAASILAGLSFTPEMQV-KATKTFSGGWRMRIALARALFIEPDLLLLDE 370
Query: 526 ATSALD 531
T+ LD
Sbjct: 371 PTNHLD 376
|
Length = 718 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 8e-04
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 1024 SIKIEAGKSTALVGQSGSGKSTIIGLIERFYD-----PLKGDVKIDDRDI--RSYHLRSL 1076
++ I + TA++G SG GKST I + L G++ + +I L L
Sbjct: 32 NLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVEL 91
Query: 1077 RRHIALVSQEPTLFAGTIRENIAYG 1101
R++I +V Q+ F +I +N+AYG
Sbjct: 92 RKNIGMVFQKGNPFPQSIFDNVAYG 116
|
Length = 259 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 9e-04
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
Query: 1019 IFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDI--RSYHLRSL 1076
G S++I G ++G +G+GKST++ I P G + ID D+ +S R+
Sbjct: 21 ALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRAN 80
Query: 1077 RRHIALVSQEP---TLFAGTIRENIAYGAS 1103
+A V Q+P T TI EN+A S
Sbjct: 81 L--LARVFQDPLAGTAPELTIEENLALAES 108
|
Length = 263 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.001
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 1024 SIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALV 1083
S+ ++ G+ L+G SG GK+T++ +I G + RDI L +R +V
Sbjct: 24 SLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDIT--RLPPQKRDYGIV 81
Query: 1084 SQEPTLFAG-TIRENIAYG 1101
Q LF T+ +NIAYG
Sbjct: 82 FQSYALFPNLTVADNIAYG 100
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.001
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 1027 IEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLR-RHIALVSQ 1085
I+ G L+G SG GK+T++ L+ P +G + ID D+ RS++ R I +V Q
Sbjct: 29 IKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTH---RSIQQRDICMVFQ 85
Query: 1086 EPTLFAG-TIRENIAYG 1101
LF ++ EN+ YG
Sbjct: 86 SYALFPHMSLGENVGYG 102
|
Length = 351 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.001
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 19/88 (21%)
Query: 1019 IFEGFSIKIEAGKSTALVGQSGSGKSTIIGL---IERFYDPLKGDVKIDDRDI------- 1068
+ +G + + AG+ AL+G SGSGKSTI+ + +E + G ++++ +
Sbjct: 15 VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDE---GQIQVEGEQLYHMPGRN 71
Query: 1069 ------RSYHLRSLRRHIALVSQEPTLF 1090
HLR +R I +V Q LF
Sbjct: 72 GPLVPADEKHLRQMRNKIGMVFQSFNLF 99
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.001
Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 8/103 (7%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
+E++NV + V + S +E G+ L+G +G+GK+T I +I P G+V
Sbjct: 1 LEVENVTKRFG---RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEV 57
Query: 1062 KIDDRDIRSYHLRSLRRHIALVSQEPTLFAG-TIRENIAYGAS 1103
D + + R I + +E L+ + + + Y A
Sbjct: 58 LFDGKPLDIAA----RNRIGYLPEERGLYPKMKVIDQLVYLAQ 96
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.001
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
I+L V +Y + + G S + +G+ L+G +G+GKSTI +I P G +
Sbjct: 42 IDLAGVSKSYGDKA---VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKI 98
Query: 1062 KIDDRDIRSYHLRSLRRHIALVSQEPTL-FAGTIREN-IAYG 1101
+ + + R R I +V Q L T+REN + +G
Sbjct: 99 TVLGVPVPA-RARLARARIGVVPQFDNLDLEFTVRENLLVFG 139
|
Length = 340 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.001
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Query: 1019 IFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRD-------IRSY 1071
+ + S+ + AG+ AL G SG+GKST++ + Y P G + +
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPR 82
Query: 1072 HLRSLRRH-IALVSQ 1085
+ +RR I VSQ
Sbjct: 83 EVLEVRRKTIGYVSQ 97
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 0.001
Identities = 30/115 (26%), Positives = 56/115 (48%), Gaps = 13/115 (11%)
Query: 986 EPEDPEGHQPERITGN--IELQNVHFAYPARP--------DVMIFEGFSIKIEAGKSTAL 1035
++P Q + G ++++N+ +P R +V E S + G++ +L
Sbjct: 296 AKQEPPIEQDTVVDGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSL 355
Query: 1036 VGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRS---YHLRSLRRHIALVSQEP 1087
VG+SGSGKST + R + G++ + + I + L++LRR I + Q+P
Sbjct: 356 VGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDP 410
|
Length = 623 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 24/118 (20%), Positives = 47/118 (39%), Gaps = 12/118 (10%)
Query: 1014 RPDVMIFEGFSIKIEAGKSTALVGQSGSGKST----IIGLIERFYDPLKGDVKIDDRDIR 1069
R + +F S + AG++ + G +G+GK+T + GL+ P G+V I+
Sbjct: 12 RGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLR----PDAGEVYWQGEPIQ 67
Query: 1070 SYHLRSLRRHIALVSQEPTL-FAGTIRENIAY--GASDEIDESEIVEAAKAANAHDFI 1124
+ S + + + +P + T EN+ + + + I EA
Sbjct: 68 NVR-ESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLE 124
|
Length = 209 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 0.001
Identities = 26/130 (20%), Positives = 55/130 (42%), Gaps = 16/130 (12%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
I L+N+ P ++ + ++ G+ + G+SG+GK++++ + + G +
Sbjct: 393 ITLENLSLRTPDG-QTLL-SELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRI 450
Query: 1062 KI-DDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAY-GASDEIDESEIVEAAKAAN 1119
+ D + + Q P L GT+RE + Y A+ + ++E+V
Sbjct: 451 SMPADSA------------LLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVG 498
Query: 1120 AHDFIAGLNE 1129
D L+E
Sbjct: 499 LGDLAERLDE 508
|
Length = 604 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.001
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 21/86 (24%)
Query: 1027 IEAGKSTALVGQSGSGKST---------IIGLIERFYDPLKGDVKIDDRDIRSYHLRSLR 1077
++ G TAL+G+SG+GK+T G+I G++ I+ R + + +
Sbjct: 30 VKPGTLTALMGESGAGKTTLLDVLAGRKTAGVIT-------GEILINGRPLDK----NFQ 78
Query: 1078 RHIALVSQEPTLFAG-TIRENIAYGA 1102
R V Q+ T+RE + + A
Sbjct: 79 RSTGYVEQQDVHSPNLTVREALRFSA 104
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 0.001
Identities = 17/61 (27%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
+E++N+ + P +F+ ++ +EAG+ A++G++G GK+T++ + +P G V
Sbjct: 320 LEVENLTKGFDNGP---LFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTV 376
Query: 1062 K 1062
K
Sbjct: 377 K 377
|
Length = 530 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.002
Identities = 29/118 (24%), Positives = 56/118 (47%), Gaps = 25/118 (21%)
Query: 989 DPEGHQPERITGN----IELQNVHFAYPARPDVM--------IFEGFSIKIEAGKSTALV 1036
+P G P + ++++ + A+P R ++ + + S + G++ LV
Sbjct: 260 EPSG-DPVPLPEPASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLV 318
Query: 1037 GQSGSGKST----IIGLIERFYDPLKGDVKIDDRDIRSYHLRSL---RRHIALVSQEP 1087
G+SGSGKST ++ LI +G++ D + + + + R L R I +V Q+P
Sbjct: 319 GESGSGKSTTGLALLRLI-----NSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDP 371
|
Length = 529 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 0.002
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 5/98 (5%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
I+L V +Y D ++ S I G+ L+G +G+GKSTI ++ P +G +
Sbjct: 5 IDLVGVSKSYG---DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKI 61
Query: 1062 KIDDRDIRSYHLRSLRRHIALVSQEPTL-FAGTIRENI 1098
+ + S R R I +V Q L T+REN+
Sbjct: 62 TVLGEPVPS-RARLARVAIGVVPQFDNLDPEFTVRENL 98
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.002
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 1016 DVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERF--YDPLKGDVKIDDRDIR--SY 1071
I +G ++ I+ G+ AL+G +GSGKST+ I Y+ +G++ DI
Sbjct: 12 GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPP 71
Query: 1072 HLRSLRRHIALVSQEPTLFAG 1092
R+ R I L Q P G
Sbjct: 72 EERA-RLGIFLAFQYPPEIPG 91
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.002
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 6/98 (6%)
Query: 1018 MIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLR 1077
S+ + L+G +G+GKST++ +I P G++ D L
Sbjct: 14 TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHK-- 71
Query: 1078 RHIALVSQEPTLFAG-TIRENIAYGASDE-IDESEIVE 1113
I + + P L+ T REN+ + + +S I E
Sbjct: 72 --IGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDE 107
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.002
Identities = 31/102 (30%), Positives = 54/102 (52%), Gaps = 6/102 (5%)
Query: 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGD 1060
++ L+NV AY DV+I + ++ I G+ VG SG GKST++ +I D GD
Sbjct: 3 SVTLRNVTKAYG---DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGD 59
Query: 1061 VKIDDRDIRSYHLRSLRRHIALVSQEPTLFAG-TIRENIAYG 1101
+ I ++ R + R + +V Q L+ ++ EN+++G
Sbjct: 60 LFIGEK--RMNDVPPAERGVGMVFQSYALYPHLSVAENMSFG 99
|
Length = 369 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.002
Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 10/105 (9%)
Query: 1023 FSIKIEAGKSTALVGQSGSGKSTII----GLIERFYDPLKGDVKIDDRDIRSYHLRSLRR 1078
S ++ AG+ LVG +G+GKST++ G+ G ++ + + ++ L R
Sbjct: 18 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-----SGSGSIQFAGQPLEAWSATELAR 72
Query: 1079 HIALVSQEPT-LFAGTIRENIAYGASDEIDESEIVEAAKAANAHD 1122
H A +SQ+ T FA + + D+ + + A A D
Sbjct: 73 HRAYLSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDD 117
|
Length = 248 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.003
Identities = 31/129 (24%), Positives = 58/129 (44%), Gaps = 14/129 (10%)
Query: 1006 NVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDD 1065
+ F Y +P + + S + AG L G +G+GK+T++ LI +P KG++ +
Sbjct: 6 ELDFDYHDQP---LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFER 62
Query: 1066 RDIRSYHLRSLRRHIALVSQE----PTLFAGTIRENIAYG---ASDEIDESEIVEAAKAA 1118
+ I+ L + ++ + V P L T+REN Y + + +E+
Sbjct: 63 QSIKK-DLCTYQKQLCFVGHRSGINPYL---TLRENCLYDIHFSPGAVGITELCRLFSLE 118
Query: 1119 NAHDFIAGL 1127
+ D+ GL
Sbjct: 119 HLIDYPCGL 127
|
Length = 200 |
| >gnl|CDD|222219 pfam13558, SbcCD_C, Putative exonuclease SbcCD, C subunit | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 0.003
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 12/58 (20%)
Query: 499 QMSGGQKQR---IAIARAII---------KAPRILLLDEATSALDSESERVVQEALDK 544
+SGG+KQ +A+A A+ APR++ LDEA + LD E+ R + E L +
Sbjct: 22 TLSGGEKQVLAYLALAAALAAQYGSNRGGPAPRLIFLDEAFAKLDEENIRSLLELLRE 79
|
Possible exonuclease SbcCD, C subunit, on AAA proteins. Length = 79 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.004
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 1021 EGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHI 1080
+G ++ I+ G+ +L+G SG GKST++ LI P G V ++ + I +
Sbjct: 2 KGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRM---- 57
Query: 1081 ALVSQEPTLFAG-TIRENIA 1099
+V Q +L T+RENIA
Sbjct: 58 -VVFQNYSLLPWLTVRENIA 76
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.004
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 1033 TALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDR---DIRS-YHLRSLRRHIALVSQEPT 1088
TA+ G+SG+GK+++I I P KG + ++ R D L +R I V Q+
Sbjct: 27 TAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDAR 86
Query: 1089 LFAG-TIRENIAYG 1101
LF +R N+ YG
Sbjct: 87 LFPHYKVRGNLRYG 100
|
Length = 352 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.004
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 10/90 (11%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKS----TIIGLIERFYDPL 1057
IEL+N+ + G S+ ++ G+ ALVG SGSGKS +G++
Sbjct: 5 IELRNIALQ----AAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQT 60
Query: 1058 KGDVKIDDRDIRSYHLRSLRRHIALVSQEP 1087
G V +D + + LR R IA + Q P
Sbjct: 61 AGRVLLDGKPVAPCALRG--RKIATIMQNP 88
|
Length = 254 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.004
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 15/90 (16%)
Query: 1019 IFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYH------ 1072
I G + ++ G++ AL+G+SGSGKST++ ++ D G+V + + +
Sbjct: 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84
Query: 1073 LRSLRRHIALVSQE----PTLFAGTIRENI 1098
LR+ +H+ V Q PTL A EN+
Sbjct: 85 LRA--KHVGFVFQSFMLIPTLNA---LENV 109
|
Length = 228 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 0.004
Identities = 51/215 (23%), Positives = 96/215 (44%), Gaps = 62/215 (28%)
Query: 358 LGE--VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP 415
LG+ +E + + ++ R ++ D ++P G V ++G +G+GKST+ ++ P
Sbjct: 320 LGDKVIEAENLSKSFGDR---LLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQP 376
Query: 416 LGGEIIL-DGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAK 474
G I + + V ++ V Q ++ + + ++ E I
Sbjct: 377 DSGTIKIGETV------------KLAYVDQS--------RDAL---DPNKTVWEEI---- 409
Query: 475 ASNAHNFI----RQLP--------------QQYDTQVGERGVQMSGGQKQRIAIARAIIK 516
S + I R++P QQ +VG +SGG++ R+ +A+ + +
Sbjct: 410 -SGGLDIIKVGNREIPSRAYVGRFNFKGGDQQ--KKVG----VLSGGERNRLHLAKTLKQ 462
Query: 517 APRILLLDEATSALDSESERVVQEALDK----AVV 547
+LLLDE T+ LD E+ R ++EAL + AVV
Sbjct: 463 GGNVLLLDEPTNDLDVETLRALEEALLEFPGCAVV 497
|
Length = 556 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.004
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 1017 VMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHL-RS 1075
+ S+ I G+ L+G +G+GK+T++G + G + D +DI + +
Sbjct: 18 IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKI 77
Query: 1076 LRRHIALVSQEPTLFAG-TIRENIAYG 1101
+R +A+V + +F+ T+ EN+A G
Sbjct: 78 MREAVAIVPEGRRVFSRMTVEENLAMG 104
|
Length = 237 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1133 | |||
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 100.0 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 100.0 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 100.0 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 100.0 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.98 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 99.98 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 99.97 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.97 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 99.97 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 99.97 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 99.97 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.96 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 99.96 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.96 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 99.96 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.95 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.95 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.95 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.94 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 99.94 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.94 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 99.93 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.93 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.93 | |
| PF00664 | 275 | ABC_membrane: ABC transporter transmembrane region | 99.93 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.93 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.92 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.92 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.92 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.91 | |
| PF00664 | 275 | ABC_membrane: ABC transporter transmembrane region | 99.91 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.91 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.91 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.9 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.9 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 99.9 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 99.89 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.89 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.89 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 99.89 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 99.89 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 99.88 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.88 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 99.88 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 99.87 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.87 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 99.87 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 99.87 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 99.87 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.87 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 99.87 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.87 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 99.86 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 99.86 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 99.86 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 99.86 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 99.86 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 99.86 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 99.86 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.85 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.85 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 99.85 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.85 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 99.85 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 99.85 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 99.85 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 99.85 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 99.85 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 99.85 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 99.84 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 99.84 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 99.84 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.84 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.83 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 99.83 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 99.83 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 99.83 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 99.83 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 99.83 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 99.83 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.83 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 99.83 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 99.83 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.83 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.83 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 99.82 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.82 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 99.82 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 99.82 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.82 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 99.82 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.82 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.82 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.82 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 99.82 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 99.82 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 99.82 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 99.82 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 99.82 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 99.82 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 99.82 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 99.82 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 99.82 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 99.82 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.82 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 99.82 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 99.82 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 99.82 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 99.81 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.81 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 99.81 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 99.81 |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-189 Score=1701.78 Aligned_cols=1102 Identities=48% Similarity=0.801 Sum_probs=1007.4
Q ss_pred cchHHHHHhhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHH
Q 041277 18 NGSFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVAC 97 (1133)
Q Consensus 18 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (1133)
..++.++|+|..+.++.++++|.+++++.++..|++.++++++++.+....+ . ...+....+++.+++++++.+++.
T Consensus 12 ~~~~~~lf~~a~~~D~~Lm~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~--~-~~~~~~~~~~l~~~~lg~~~~~~~ 88 (1228)
T KOG0055|consen 12 TVSFFKLFRFADRFDYLLMILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTN--K-IASSEVSKVALYFVYLGVGVFISG 88 (1228)
T ss_pred ccchHHheeccchhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhccc--h-hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6679999999999999999999999999999999999999999998865421 1 112456677888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 041277 98 FLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVA 177 (1133)
Q Consensus 98 ~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (1133)
|++..||.+.++|...++|.++++.++|++++|||. + .+|++.+++++|++.|++.+++.++.+++.+.++++++++.
T Consensus 89 ~~q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~-~-~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~ 166 (1228)
T KOG0055|consen 89 FIQVSCWMRTGERQTARIRSKYLKAILRQDIGWFDT-N-STGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIG 166 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceeec-c-cccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999997 5 67999999999999999999999999999999999999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHH
Q 041277 178 FLMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQL 257 (1133)
Q Consensus 178 ~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~ 257 (1133)
|+..|+|+++++.+.|++++....+.+.+.+...+.+++++++.++++|+++++|||.+|+.|+++.+||.+.++..++.
T Consensus 167 F~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~ 246 (1228)
T KOG0055|consen 167 FYYGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKF 246 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 258 GLKQGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIME 336 (1133)
Q Consensus 258 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~ 336 (1133)
..+..+..++..+ ..++.+.++++.+|||+.++..+..++|++++++++++.....+++..|.+..+.+|++|+.+|++
T Consensus 247 gi~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~ 326 (1228)
T KOG0055|consen 247 GIKKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFE 326 (1228)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHH
Confidence 9999999999999 889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCCCCCCcccccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCC
Q 041277 337 MIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPL 416 (1133)
Q Consensus 337 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~ 416 (1133)
.++..|++++....+.......|.|+|+||+|+||.+++.++|+|+||+|++||++||||||||||||++++|.|+|+|+
T Consensus 327 ~i~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~ 406 (1228)
T KOG0055|consen 327 TIDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPT 406 (1228)
T ss_pred HhcCCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 99999887765433334556789999999999999999889999999999999999999999999999999999999999
Q ss_pred ccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCC
Q 041277 417 GGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGER 496 (1133)
Q Consensus 417 ~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~ 496 (1133)
+|+|++||.|+++++.+|+|++||+|+|+|.||++||+|||.||+|+++.+++.+|||.+++++|+..+|+||+|.+||+
T Consensus 407 ~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~ 486 (1228)
T KOG0055|consen 407 SGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGER 486 (1228)
T ss_pred CceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEE
Q 041277 497 GVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVM 576 (1133)
Q Consensus 497 g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~ 576 (1133)
|.+|||||||||||||||++||+||||||||||||+++|+.++++|++.++|+|+|+|||||+++++||+|+||++|+|+
T Consensus 487 g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~Iv 566 (1228)
T KOG0055|consen 487 GVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIV 566 (1228)
T ss_pred CCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCcchhccccchhhHHHHHhhcCCCCCCC--Cccc-ccccccccCCCCCCcccccccccccccccCccccCCC-CCCC
Q 041277 577 ETGSHDELIQAESGLYTSLVRLQTTTPDDNN--NATM-HSLASKSSNMDMNSTSSRRLSIVSLSSSANSFAQGRG-ASQS 652 (1133)
Q Consensus 577 ~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 652 (1133)
|.|+|+||++. .|.|.++++.|....+.+. ++.+ ......+........+..+.+ .. ........ .+..
T Consensus 567 E~G~h~ELi~~-~G~Y~~lv~~Q~~~~~~~~~~~~~~~~~~~~~s~~~s~~~~~~~~~~----~~--~~~~~~~~~~e~~ 639 (1228)
T KOG0055|consen 567 EQGTHDELIAL-GGIYSSLVRLQELEKAAEDEEEEESLKEERSRSLKSSSSSPSLSRGS----NR--SNLLSVKPEGEDP 639 (1228)
T ss_pred EecCHHHHHhc-cchHHHHHHHHhhhhhhhccccccchhhhhhhccccccccccccCCc----cc--ccccccccccccc
Confidence 99999999995 5999999999865543221 0000 000000000000000000000 00 00000000 0000
Q ss_pred cchhhcCCCchHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHH
Q 041277 653 NEEDIKKLPVPSFRRLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVF 732 (1133)
Q Consensus 653 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (1133)
.++........++++++++.+|+|+++++|++++++.++..|++++.+++++..+...+++........|.++|++++++
T Consensus 640 ~~~~~~~~~~~s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~ 719 (1228)
T KOG0055|consen 640 EEPVSEEDEKVSFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIV 719 (1228)
T ss_pred ccccccccccccHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHH
Confidence 00001111456799999999999999999999999999999999999999999988766555555555699999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHH
Q 041277 733 TLVINIIQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTI 812 (1133)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~ 812 (1133)
.++++++++|++.+++++++.++|..+|+++++++++|||+++|+ |+|.+|+.+|+..++..+++.+..+++++..+++
T Consensus 720 ~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~ 798 (1228)
T KOG0055|consen 720 SGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLSLVVQNIAAVII 798 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998 9999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhh
Q 041277 813 AFTMGLFIAWRLALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQ 892 (1133)
Q Consensus 813 ~~~~~~~~~w~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~ 892 (1133)
++++.|+++|+++++++++.|++++..+.+.++++....+.+++.++.+..+.|+++++|||++|++|+++.+.|.+.++
T Consensus 799 ~iiiaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~ 878 (1228)
T KOG0055|consen 799 GIIIAFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELE 878 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 041277 893 GPRRESIRQSWYAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAV 972 (1133)
Q Consensus 893 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 972 (1133)
...+...++.++.++.+++++++.++.+++.+|||++|+.+|.+++.+++.+++.+.+....+++...+.+++.++..|+
T Consensus 879 ~p~~~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa 958 (1228)
T KOG0055|consen 879 KPRKSSFKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAA 958 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCCCCCCCCCCCCCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhh
Q 041277 973 GSVFAVMDRYTKIEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIER 1052 (1133)
Q Consensus 973 ~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R 1052 (1133)
.+++++++++|++++.++.+..++..+|+|+|+||+|+||+||+.+||+|+||+|++||++||||||||||||++.||.|
T Consensus 959 ~~iF~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeR 1038 (1228)
T KOG0055|consen 959 GSIFEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLER 1038 (1228)
T ss_pred HHHHHHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999887665444445567899999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCeEEECCcccCCCChhHHhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccC
Q 041277 1053 FYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYD 1132 (1133)
Q Consensus 1053 ~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~d 1132 (1133)
||||++|.|.|||+||+++++++||++||+|.|||.||++||||||.||..+ +|++||++|||.||+|+||.+||+|||
T Consensus 1039 fYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~-vs~~eIi~Aak~ANaH~FI~sLP~GyD 1117 (1228)
T KOG0055|consen 1039 FYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEE-VSEEEIIEAAKLANAHNFISSLPQGYD 1117 (1228)
T ss_pred hcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCC-CCHHHHHHHHHHhhhHHHHhcCcCccc
Confidence 9999999999999999999999999999999999999999999999999544 899999999999999999999999999
Q ss_pred C
Q 041277 1133 T 1133 (1133)
Q Consensus 1133 T 1133 (1133)
|
T Consensus 1118 T 1118 (1228)
T KOG0055|consen 1118 T 1118 (1228)
T ss_pred C
Confidence 8
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-151 Score=1483.34 Aligned_cols=1101 Identities=27% Similarity=0.463 Sum_probs=920.1
Q ss_pred ccchHHHHHhhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHH
Q 041277 17 KNGSFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVA 96 (1133)
Q Consensus 17 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (1133)
++.+++++|+|..+.++.+++++++++++.+++.|+++++++.++|.+... ..+..+++.+++++++.+++
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~---------~~~~~~~~~~~~~~i~~~~~ 113 (1466)
T PTZ00265 43 QKIPFFLPFKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLG---------ENVNDIIFSLVLIGIFQFIL 113 (1466)
T ss_pred ccccHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------chHHHHHHHHHHHHHHHHHH
Confidence 456799999999988888899999999999999999999999999976321 11223345566677788899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 041277 97 CFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLV 176 (1133)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 176 (1133)
.+++.+++.+.++++..++|.++|++++++|++|||. . ++|++++++++|++.+++.++..+..++..++.+++++++
T Consensus 114 ~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~-~-~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~ 191 (1466)
T PTZ00265 114 SFISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDN-N-PGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIW 191 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcC-C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999996 6 8999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHH
Q 041277 177 AFLMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQ 256 (1133)
Q Consensus 177 ~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~ 256 (1133)
+|+++|+|++++++++|+++++..++.+++++..++.++..+++.+.+.|+++|+++||+|+.|+.+.++|++..+...+
T Consensus 192 ~~~~sw~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~ 271 (1466)
T PTZ00265 192 SLFKNARLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSK 271 (1466)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988888888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhc--------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 257 LGLKQGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVMYH--------GAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEA 327 (1133)
Q Consensus 257 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~--------~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (1133)
...+.....++..+ ..++.++++++++|+|++++..| .+++|.+++++++.+.....+..+.+.+..++++
T Consensus 272 ~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a 351 (1466)
T PTZ00265 272 YILKANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKS 351 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888877 77778888899999999999986 5789999988877777667777778889999999
Q ss_pred HHHHHHHHHHhccCCCCCCCCCcccccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHH
Q 041277 328 MAAGERIMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIA 407 (1133)
Q Consensus 328 ~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~ 407 (1133)
.+|++||+++++.+|+.+. ...+...+. .+.|+++||+|+|+++++.++|+|+||+|++||++|||||||||||||++
T Consensus 352 ~~a~~ri~~ii~~~~~~~~-~~~~~~~~~-~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~ 429 (1466)
T PTZ00265 352 LEATNSLYEIINRKPLVEN-NDDGKKLKD-IKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILK 429 (1466)
T ss_pred HHHHHHHHHHHcCCCCCCC-CCCCccCCC-CCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHH
Confidence 9999999999998776432 111111222 24799999999998654457999999999999999999999999999999
Q ss_pred HHHhccCCCccEEEE-CCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCC------------------------
Q 041277 408 LLQRFYAPLGGEIIL-DGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKE------------------------ 462 (1133)
Q Consensus 408 ~l~~~~~~~~G~i~~-~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~------------------------ 462 (1133)
+|+|+|+|++|+|++ ||+++++++.+++|++||||+|+|.||++||+|||.+|.+
T Consensus 430 lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (1466)
T PTZ00265 430 LIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKN 509 (1466)
T ss_pred HHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhcccccccccccccccc
Confidence 999999999999999 5799999999999999999999999999999999999742
Q ss_pred ---------------------------------CCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHH
Q 041277 463 ---------------------------------DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIA 509 (1133)
Q Consensus 463 ---------------------------------~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~ 509 (1133)
+.++++++++|+.+++++|+.++|+||||.+|++|.+|||||||||+
T Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRia 589 (1466)
T PTZ00265 510 KRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRIS 589 (1466)
T ss_pred ccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHH
Confidence 23568899999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhcCCEEEEEeCC--------------
Q 041277 510 IARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRNADVIAVVQDG-------------- 573 (1133)
Q Consensus 510 iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~G-------------- 573 (1133)
|||||+++|+|||||||||+||+++++.+++.|+++. +|+|+|+||||+++++.||+|++|++|
T Consensus 590 IARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~ 669 (1466)
T PTZ00265 590 IARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGED 669 (1466)
T ss_pred HHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCcccccccccccccc
Confidence 9999999999999999999999999999999999885 489999999999999999999999986
Q ss_pred ---------------------------------eEEeecCcchhccccchhhHHHHHhhcCCCCCCCCc-cc-ccccccc
Q 041277 574 ---------------------------------QVMETGSHDELIQAESGLYTSLVRLQTTTPDDNNNA-TM-HSLASKS 618 (1133)
Q Consensus 574 ---------------------------------~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~ 618 (1133)
+|+|+|+|+||++..+|.|+.+++.|.........+ .. .......
T Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~ 749 (1466)
T PTZ00265 670 PTKDNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDSDMKSS 749 (1466)
T ss_pred ccccccccccccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhccccccccccccccccccccc
Confidence 599999999999756899999998875432111000 00 0000000
Q ss_pred cCCCCCCcc-cccccc----cccc---cccCccccCCCCCCCcc-h-----h---hcCCCchHHHHHHHhhccchHHHHH
Q 041277 619 SNMDMNSTS-SRRLSI----VSLS---SSANSFAQGRGASQSNE-E-----D---IKKLPVPSFRRLVALNAPEWKQATL 681 (1133)
Q Consensus 619 ~~~~~~~~~-~~~~~~----~~~~---~~~~~~~~~~~~~~~~~-~-----~---~~~~~~~~~~~l~~~~~~~~~~~~~ 681 (1133)
...+..... ...... .... ........+...+...+ + + ........+++++++.+++++.+++
T Consensus 750 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 829 (1466)
T PTZ00265 750 AYKDSERGYDPDEMNGNSKHENESASNKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYKKDVTI 829 (1466)
T ss_pred cccccccccccccccccccccccccccccccccccccccchhccccchhhhhccccccccchhHHHHHHHHHHHHHHHHH
Confidence 000000000 000000 0000 00000000000000000 0 0 0000111345566667777778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 682 GCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINIIQHYNFAYMGEHLTKRIRERMLS 761 (1133)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~ 761 (1133)
+++++++.+++.|+++++++.+++.++.. .........|.+++++++++.+++.+++.|+..++++++..++|.++|+
T Consensus 830 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~ 907 (1466)
T PTZ00265 830 IALSILVAGGLYPVFALLYAKYVSTLFDF--ANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFE 907 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999876532 1122234456777788888888999999999999999999999999999
Q ss_pred HHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 041277 762 KILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWRLALVMIAVQPLVIICFYA 841 (1133)
Q Consensus 762 ~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~w~l~lv~l~~~pl~~~~~~~ 841 (1133)
+++++|++|||++++++|++++|+++|++.++..+...+..++..++.++++++++++++|++++++++++|++......
T Consensus 908 ~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~ 987 (1466)
T PTZ00265 908 NILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAI 987 (1466)
T ss_pred HHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999766899999999999999999999999999999999999999999999999988876555444333222
Q ss_pred HHHHHHH--HHH-------------HHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 041277 842 RRVLLKS--MSN-------------KAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSWYAG 906 (1133)
Q Consensus 842 ~~~~~~~--~~~-------------~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 906 (1133)
..+.... ..+ ..++..++.+..++|+++|++|||+|+.|+++.++|.+..+...+...+..++.+
T Consensus 988 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 1067 (1466)
T PTZ00265 988 RARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNS 1067 (1466)
T ss_pred HHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2121111 000 0233456778999999999999999999999999999999999998898999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCCCC
Q 041277 907 IGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRYTKIE 986 (1133)
Q Consensus 907 ~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~ 986 (1133)
...++.+.+..+..++++|+|++++..|.+++|++++++.+..+...++..+..++++++++..+++|++++++++++++
T Consensus 1068 ~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~ 1147 (1466)
T PTZ00265 1068 MLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNID 1147 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCC
Confidence 99999999999999999999999999999999999998877777767788899999999999999999999998765442
Q ss_pred CCCCCCCC---CCCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCC-------
Q 041277 987 PEDPEGHQ---PERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDP------- 1056 (1133)
Q Consensus 987 ~~~~~~~~---~~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp------- 1056 (1133)
..+..+.. ++...|.|+|+||+|+||++|+.+||+|+||+|+|||+||||||||||||||++||+|||||
T Consensus 1148 ~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~ 1227 (1466)
T PTZ00265 1148 VRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIV 1227 (1466)
T ss_pred CCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccc
Confidence 21111111 12345889999999999977767899999999999999999999999999999999999999
Q ss_pred -----------------------------------------------CCCeEEECCcccCCCChhHHhhccccccccccc
Q 041277 1057 -----------------------------------------------LKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTL 1089 (1133)
Q Consensus 1057 -----------------------------------------------~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~L 1089 (1133)
++|+|+|||+||+++++++||++||||||||+|
T Consensus 1228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~L 1307 (1466)
T PTZ00265 1228 FKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPML 1307 (1466)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcc
Confidence 699999999999999999999999999999999
Q ss_pred ccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1090 FAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1090 F~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
|+|||||||+||+| +++||||++|||.|++||||++||+||||
T Consensus 1308 F~gTIreNI~~g~~-~at~eeI~~A~k~A~l~~fI~~LP~GydT 1350 (1466)
T PTZ00265 1308 FNMSIYENIKFGKE-DATREDVKRACKFAAIDEFIESLPNKYDT 1350 (1466)
T ss_pred ccccHHHHHhcCCC-CCCHHHHHHHHHHcCCHHHHHhCccccCC
Confidence 99999999999987 57999999999999999999999999998
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-142 Score=1329.19 Aligned_cols=1031 Identities=22% Similarity=0.292 Sum_probs=782.8
Q ss_pred HhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH----H
Q 041277 47 GFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACFLEGYCW---TRTGERQATRMRAR----Y 119 (1133)
Q Consensus 47 ~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~lr~~----~ 119 (1133)
.+..| .+++.+++.+.... . .... .++++++.+++.+++..+. .+...+++.++|.. +
T Consensus 217 ~~~~P---~lL~~li~~~~~~~---~--~~~~-------g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~~~I 281 (1381)
T KOG0054|consen 217 GFVGP---LLLKKLILFFSEKR---L--PLNN-------GYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALISAI 281 (1381)
T ss_pred ccccH---HHHHHHHHHhcCCC---c--ccch-------hHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHHH
Confidence 44555 67788888765430 0 0011 1222333334444444332 24455666666665 5
Q ss_pred HHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 041277 120 LKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLWRLAIVGFPFVVLLVIPG 199 (1133)
Q Consensus 120 ~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~ 199 (1133)
|+|.++++...-.. . ++|+++|.+++|++++.++... +..+...++.+++++.+++..-..-++++++++.++++++
T Consensus 282 Y~K~L~ls~~~~~~-~-t~G~ivNlms~D~~ri~~~~~~-~h~~w~~Plqi~~~l~lLy~~LG~sa~~G~~~~il~~p~n 358 (1381)
T KOG0054|consen 282 YRKALRLSNSARGE-T-TVGEIVNLMSVDAQRLSDAACF-LHLLWSAPLQIILALYLLYGLLGPSALAGVAVMVLLIPLN 358 (1381)
T ss_pred HHhhhcCchhhccC-C-CcchhhhhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 66666666655442 4 8999999999999999987542 3344444444444444444333334788888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 041277 200 LMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGLKQGLAKGLAIG-SNGVTFGI 278 (1133)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 278 (1133)
.+++++.++.+++.++..|++.+.++|.++|||+||+|+||+.|.++.++.++++.+...|..+..++... ..+...+.
T Consensus 359 ~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p~lv 438 (1381)
T KOG0054|consen 359 SFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFFSPVLV 438 (1381)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998888887766 32333222
Q ss_pred HHHHHHHHHHH-HHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcccccccc
Q 041277 279 WSFLCYYGSRM-VMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEILENV 357 (1133)
Q Consensus 279 ~~~~~~~g~~~-v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~ 357 (1133)
..+.++.+. ...+.+|+..+|+.+.++..+..|+..++..+..+.++.+|.+|+.+++..++ .++........++.
T Consensus 439 --~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e-~~~~~~~~~~~~~~ 515 (1381)
T KOG0054|consen 439 --SVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEE-LDPDSVERSPDEAG 515 (1381)
T ss_pred --HHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-cCccccccCCCCCC
Confidence 233444454 45677899899999998888899999999999999999999999999998653 33222211122334
Q ss_pred cccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhh
Q 041277 358 LGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRS 437 (1133)
Q Consensus 358 ~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~ 437 (1133)
+..++++|.+|+|++....+.|+||||+|++|+.+|||||.|||||||+.+|+|+++..+|+|.++|
T Consensus 516 ~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~g------------- 582 (1381)
T KOG0054|consen 516 ENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNG------------- 582 (1381)
T ss_pred CceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcC-------------
Confidence 4579999999999864445599999999999999999999999999999999999999999999999
Q ss_pred hceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhC
Q 041277 438 QMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKA 517 (1133)
Q Consensus 438 ~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 517 (1133)
.++||||+||+|++||||||.||.| .+.++..++.+.|++.++++.||.|+.|+|||+|.+|||||||||+||||+|+|
T Consensus 583 siaYv~Q~pWI~ngTvreNILFG~~-~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~ 661 (1381)
T KOG0054|consen 583 SVAYVPQQPWIQNGTVRENILFGSP-YDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQD 661 (1381)
T ss_pred eEEEeccccHhhCCcHHHhhhcCcc-ccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhcc
Confidence 5999999999999999999999986 678888999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCcccCCChHHH-HHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhccccchhhHHHH
Q 041277 518 PRILLLDEATSALDSESE-RVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLV 596 (1133)
Q Consensus 518 ~~illlDE~ts~lD~~~~-~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 596 (1133)
+||+|||||+||+|+|+. +.+.++++...++||+|+|||+++.+++||+|++|+||+|.+.|+++||++ ....|.++.
T Consensus 662 adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~-~~~~~~~l~ 740 (1381)
T KOG0054|consen 662 ADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLK-SGGDFAELA 740 (1381)
T ss_pred CCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHh-cchhHHHHh
Confidence 999999999999999965 566778878889999999999999999999999999999999999999997 577788774
Q ss_pred HhhcCCCCCCCCcccccccccccCCCCCCcccccccccccccccCccccCCC-CCCCcchhhcCCCchHHHHHHHhhccc
Q 041277 597 RLQTTTPDDNNNATMHSLASKSSNMDMNSTSSRRLSIVSLSSSANSFAQGRG-ASQSNEEDIKKLPVPSFRRLVALNAPE 675 (1133)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~ 675 (1133)
.......+.+......+ ..... ..... +........ .+....... ..+..++++.+.+...++.+..|.+..
T Consensus 741 ~~~~~~~~~~~~~~~~~-~~~~~---~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~ee~~~G~v~~~vY~~Y~~a~ 813 (1381)
T KOG0054|consen 741 HEEESEQEEEASEKDLE-SGESS---RESES--RSLESLSSE-EEKSKDEKEEEDKLVQEEERETGKVSWSVYKKYIKAA 813 (1381)
T ss_pred hccchhhcccccccccc-ccccc---cchhh--hhhhhhccc-ccccccccchhhHHHHHHHHhcCEeeHHHHHHHHHhc
Confidence 33222211110000000 00000 00000 000000000 000000000 000011222244555555555555442
Q ss_pred hHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 676 WKQ--ATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINIIQHYNFAYMGEHLTK 753 (1133)
Q Consensus 676 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 753 (1133)
+.. ..+.+++.+....+.....+|++.|.+.-...... ......|..+|.+++++..++..++.+.+...+.++++
T Consensus 814 ~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~--~~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~ 891 (1381)
T KOG0054|consen 814 GGFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGEDNGTT--TVSTSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASR 891 (1381)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc--CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 22223344444455555566666665432111000 02345688899999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 041277 754 RIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWRLALVMIAVQP 833 (1133)
Q Consensus 754 ~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~w~l~lv~l~~~p 833 (1133)
+||++|+++++|.||+||| .||+|||+|||++|++.+|..++..+..+++.++.++++++++.+..|+ ++++++|
T Consensus 892 ~Lh~~ml~~Ilrapm~FFd--tTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~---fli~~~p 966 (1381)
T KOG0054|consen 892 KLHDKLLNSILRAPMSFFD--TTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPW---FLIAIIP 966 (1381)
T ss_pred HHHHHHHHHHHhCcchhcC--CCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHH---HHHHHHH
Confidence 9999999999999999999 6999999999999999999999999999999999999999988888775 5566777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q 041277 834 LVIICFYARRVLLKSMSNKAIKA----QAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSWYAGIGL 909 (1133)
Q Consensus 834 l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 909 (1133)
+.+++++++.+|.+. +|+.++. ++++.+|++|+++|+.|||||+.|++|.+++.+.+|.+.+..+-.... ..|.
T Consensus 967 l~v~~~~~~~~Y~~t-sReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a-~RWl 1044 (1381)
T KOG0054|consen 967 LGVIYYFVQRYYLAT-SRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISA-NRWL 1044 (1381)
T ss_pred HHHHHHHHHHHHHHH-hHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHH-HHHH
Confidence 777777766666654 5555444 568899999999999999999999999999999999988765543322 2333
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCCCCCC
Q 041277 910 AFSQ-SLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRYTKIEPE 988 (1133)
Q Consensus 910 ~~~~-~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~ 988 (1133)
++.. .+..+..+.+.. .+.+...+..++|.+...+.|.......+.-+.....++++.+.|+||+.++.+.+++.+.+
T Consensus 1045 a~Rle~ig~~~v~~~al-~~vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~ 1123 (1381)
T KOG0054|consen 1045 AVRLELLGNLVVLIAAL-FAVLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLE 1123 (1381)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCC
Confidence 3332 222222222222 22222222267888888899999999999999999999999999999999999976662222
Q ss_pred CCCC--CCCCCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCc
Q 041277 989 DPEG--HQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDR 1066 (1133)
Q Consensus 989 ~~~~--~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~ 1066 (1133)
.++. ++..|.+|+|+|+|++.||.++ .++|||||||+|+||||||||||||||||||+++|+|+.+|.+|+|.|||+
T Consensus 1124 ~~~~~pp~~WP~~G~I~f~~~~~RYrp~-lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgv 1202 (1381)
T KOG0054|consen 1124 IEESRPPPSWPSKGEIEFEDLSLRYRPN-LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGV 1202 (1381)
T ss_pred CcCCCCCCCCCCCCeEEEEEeEEEeCCC-CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCe
Confidence 2122 1223467999999999999532 257999999999999999999999999999999999999999999999999
Q ss_pred ccCCCChhHHhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1067 DIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1067 dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
||+++++++||+++++|||||+||+||+|.||++- ++++|+|||+|+|+|+++++|+++|+|+|+
T Consensus 1203 dI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf--~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~ 1267 (1381)
T KOG0054|consen 1203 DISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPF--DEYSDDEIWEALERCQLKDVVSSLPGGLDS 1267 (1381)
T ss_pred ecccccHHHHHhcCeeeCCCCceecCccccccCcc--cccCHHHHHHHHHHhChHHHHhhCCcCCCc
Confidence 99999999999999999999999999999999532 689999999999999999999999999985
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-133 Score=1327.86 Aligned_cols=984 Identities=18% Similarity=0.246 Sum_probs=735.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHH
Q 041277 105 TRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLWRL 184 (1133)
Q Consensus 105 ~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 184 (1133)
.+.+.++...++..+|+|+++++..++++ . ++|+++|++++|++++++.+. .+..++..++.+++++++++..-...
T Consensus 366 ~~~~~~ir~~L~~~i~~k~L~l~~~~~~~-~-~~G~ivnl~s~Dv~~i~~~~~-~l~~l~~~pl~ii~~~~lL~~~lg~~ 442 (1622)
T PLN03130 366 MRVGFRLRSTLVAAVFRKSLRLTHEGRKK-F-TSGKITNLMTTDAEALQQICQ-QLHTLWSAPFRIIIAMVLLYQQLGVA 442 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhcCC-C-CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888889999999999999985 6 899999999999999999874 45556666666555555544432223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 185 AIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGLKQGLA 264 (1133)
Q Consensus 185 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 264 (1133)
++++++++.+++++..++.++.++.+++.++..+++.+.+.|.++||++||+|+||+.+.+++++.++++.+...+....
T Consensus 443 ~l~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~ 522 (1622)
T PLN03130 443 SLIGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLL 522 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445566666778888899999999999999999999999999999999999999999999988887777666665
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 041277 265 KGLAIG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEMIKRVPK 343 (1133)
Q Consensus 265 ~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~ 343 (1133)
.++... ...+. ..+.++++|++.+..|.+|+|.+++++.++..+..|+..++..+..+.++++|++||.++++.++.
T Consensus 523 ~~~~~~~~~~~~--~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~ 600 (1622)
T PLN03130 523 SAFNSFILNSIP--VLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEER 600 (1622)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 554433 11111 134456788999999999999999999888888899999888999999999999999999976533
Q ss_pred CCCCCCcccccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCc-cEEEE
Q 041277 344 IDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLG-GEIIL 422 (1133)
Q Consensus 344 ~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~-G~i~~ 422 (1133)
.+... .......+.|+++|++|+|++++++++|+|+||+|++||+++||||||||||||+++|+|+++|++ |+|.+
T Consensus 601 ~~~~~---~~~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l 677 (1622)
T PLN03130 601 VLLPN---PPLEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI 677 (1622)
T ss_pred ccccC---CcccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE
Confidence 21111 001112346999999999986444579999999999999999999999999999999999999999 99985
Q ss_pred CCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCCh
Q 041277 423 DGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSG 502 (1133)
Q Consensus 423 ~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSg 502 (1133)
|++|+||+|+||+|++||||||.||.+ .+++++.++++.|+++++++.+|+|++|.|||+|.+|||
T Consensus 678 -------------~~~Iayv~Q~p~LfngTIreNI~fg~~-~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSG 743 (1622)
T PLN03130 678 -------------RGTVAYVPQVSWIFNATVRDNILFGSP-FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISG 743 (1622)
T ss_pred -------------cCeEEEEcCccccCCCCHHHHHhCCCc-ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCH
Confidence 448999999999999999999999987 578999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHH-HHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCc
Q 041277 503 GQKQRIAIARAIIKAPRILLLDEATSALDSESERVV-QEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSH 581 (1133)
Q Consensus 503 Gqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i-~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~ 581 (1133)
||||||+||||++++|+|+||||||||||+++++.+ .++++...+++|+|+|||+++.++.||+|++|++|+|+++|+|
T Consensus 744 GQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~ 823 (1622)
T PLN03130 744 GQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTY 823 (1622)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCH
Confidence 999999999999999999999999999999998766 5677777789999999999999999999999999999999999
Q ss_pred chhccccchhhHHHHHhhcCCCCCCCCcccccccccccCCCCCCcccccccccccccccCccccCCCCCCCcchhhcCCC
Q 041277 582 DELIQAESGLYTSLVRLQTTTPDDNNNATMHSLASKSSNMDMNSTSSRRLSIVSLSSSANSFAQGRGASQSNEEDIKKLP 661 (1133)
Q Consensus 582 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (1133)
+|+++ .++.|++++..+...++..+.+........ .. ...... ......... ..............+++.+..+
T Consensus 824 ~eL~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~e~~~~g 897 (1622)
T PLN03130 824 EELSN-NGPLFQKLMENAGKMEEYVEENGEEEDDQT-SS-KPVANG--NANNLKKDS-SSKKKSKEGKSVLIKQEERETG 897 (1622)
T ss_pred HHHHh-cchhHHHHHHhccccccccccccccccccc-cc-cccccc--ccccccccc-cccccccccchhhhhHHHHhcC
Confidence 99987 578888887654322111110000000000 00 000000 000000000 0000000000000111111223
Q ss_pred chHHHHHHHhhcc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 041277 662 VPSFRRLVALNAP--EWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINII 739 (1133)
Q Consensus 662 ~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 739 (1133)
...+..+..|.+. .++...+.+++.++..++....++|+..|.+..... ......|+.+|++++++..++.++
T Consensus 898 ~v~~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~-----~~~~~~~~~i~~~l~~~~~i~~~~ 972 (1622)
T PLN03130 898 VVSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPK-----THGPLFYNLIYALLSFGQVLVTLL 972 (1622)
T ss_pred ccCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC-----CCchhHHHHHHHHHHHHHHHHHHH
Confidence 3334444444332 122222222333333444444556666555432110 112344666788888888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 041277 740 QHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLF 819 (1133)
Q Consensus 740 ~~~~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~ 819 (1133)
+.+++.+.+.+++.++|.+++++++++|++||| ++|+|+|+||+++|++.++..++..+..++..++.+++.++++++
T Consensus 973 ~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd--~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~ 1050 (1622)
T PLN03130 973 NSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFH--TNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGI 1050 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhc--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998 689999999999999999999999999999999999988888888
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHH
Q 041277 820 IAWRLALVMIAVQPLVIICFYAR---RVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRR 896 (1133)
Q Consensus 820 ~~w~l~lv~l~~~pl~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~ 896 (1133)
++|... ++++|+.+++.... .+..++..+......+++.+++.|+++|++|||+|+.++++.+++.+..+...+
T Consensus 1051 ~~~~~~---~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~ 1127 (1622)
T PLN03130 1051 VSTISL---WAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIR 1127 (1622)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 887433 33344433333222 233333444445556788999999999999999999999888888777766554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCC-CC-----HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 041277 897 ESIRQSWYAGIGLAFSQSLASCTWALDFWYG-GRLIADGY-IS-----SKALFETFMILVSTGRVIADAGSMTTDIAKGS 969 (1133)
Q Consensus 897 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~l~~~g~-~t-----~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 969 (1133)
..........+....... ...++++++ ...+..+. .+ .+.+..++.+......++..+......+++.+
T Consensus 1128 ~~~~~~~~~~wl~~~l~~----~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~ 1203 (1622)
T PLN03130 1128 FTLVNMSSNRWLAIRLET----LGGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSL 1203 (1622)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433222111111111111 112222333 33333321 11 23333444555566667777778888999999
Q ss_pred HHHHHHHHHhccCCCCCCCCCCCCCC--CCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHH
Q 041277 970 DAVGSVFAVMDRYTKIEPEDPEGHQP--ERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTII 1047 (1133)
Q Consensus 970 ~s~~ri~~~l~~~~~~~~~~~~~~~~--~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~ 1047 (1133)
.+++|+.++++.+++.+...++..++ .+.+|.|+|+||+|+|+++ .++||+|+||+|+|||+||||||||||||||+
T Consensus 1204 ~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl 1282 (1622)
T PLN03130 1204 NAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFEISPSEKVGIVGRTGAGKSSML 1282 (1622)
T ss_pred HHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CCceecceeEEEcCCCEEEEECCCCCCHHHHH
Confidence 99999999998665432111111111 1346899999999999632 24699999999999999999999999999999
Q ss_pred HHHhhhcCCCCCeEEECCcccCCCChhHHhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhc
Q 041277 1048 GLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGL 1127 (1133)
Q Consensus 1048 ~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~L 1127 (1133)
++|+|||||++|+|+|||+||+++++++||++|++|||||+||+|||||||++++ +++|||+|+||++|+++|||++|
T Consensus 1283 ~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~--~~tdeei~~Al~~a~l~~~I~~l 1360 (1622)
T PLN03130 1283 NALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN--EHNDADLWESLERAHLKDVIRRN 1360 (1622)
T ss_pred HHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCC--CCCHHHHHHHHHHcCcHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999885 57999999999999999999999
Q ss_pred ccccCC
Q 041277 1128 NEGYDT 1133 (1133)
Q Consensus 1128 P~G~dT 1133 (1133)
|+||||
T Consensus 1361 p~GLdt 1366 (1622)
T PLN03130 1361 SLGLDA 1366 (1622)
T ss_pred ccccCc
Confidence 999997
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-132 Score=1318.11 Aligned_cols=1040 Identities=19% Similarity=0.238 Sum_probs=754.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 38 LGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACFLEGYCWTRTGERQATRMRA 117 (1133)
Q Consensus 38 ~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 117 (1133)
++.++.++..++....|++++.+++.+... +. .. ....++..+++..++..++.....+...+.+.++...++.
T Consensus 305 ~~~~~~i~~~~~~~~~P~ll~~li~~~~~~---~~-~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~l~~ 378 (1495)
T PLN03232 305 LGGIFKIGHDLSQFVGPVILSHLLQSMQEG---DP-AW--VGYVYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRSTLVA 378 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---Cc-cc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555557888999876432 11 00 0111111111111112222111122235677888888888
Q ss_pred HHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHH
Q 041277 118 RYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLWRLAIVG---FPFVVL 194 (1133)
Q Consensus 118 ~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~---l~~~~~ 194 (1133)
.+|+|+++++..++++ . ++|+++|++++|++++++.+ ..+..++..++.+++++++++ +.++++. ++++.+
T Consensus 379 ~i~~k~l~l~~~~~~~-~-~~G~i~n~ls~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~l~---~~lg~~~l~~~~v~~l 452 (1495)
T PLN03232 379 AIFHKSLRLTHEARKN-F-ASGKVTNMITTDANALQQIA-EQLHGLWSAPFRIIVSMVLLY---QQLGVASLFGSLILFL 452 (1495)
T ss_pred HHHHHHhcCChhhcCC-C-CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHH
Confidence 9999999999999985 6 89999999999999999986 344455555544444443332 2233322 223334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 041277 195 LVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGLKQGLAKGLAIG-SNG 273 (1133)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 273 (1133)
++++..++.++.++..++.++..+++.+.+.|.++||++||+|+||+.+.+++++.++++.+...+.....++... ...
T Consensus 453 ~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~ 532 (1495)
T PLN03232 453 LIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNS 532 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445677888999999999999999999999999999999999999999999999999888887777666554433 111
Q ss_pred HHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcccc
Q 041277 274 VTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEI 353 (1133)
Q Consensus 274 ~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~ 353 (1133)
. ...+.++++|++++.+|.+|+|.+++++.++.....|+..++..+..+.++.+|++||.++++.+++.+... ..
T Consensus 533 ~--~~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~---~~ 607 (1495)
T PLN03232 533 I--PVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQN---PP 607 (1495)
T ss_pred H--HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccc---CC
Confidence 1 122334678999999999999999999988888889999999999999999999999999998654322111 11
Q ss_pred cccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHH
Q 041277 354 LENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLK 433 (1133)
Q Consensus 354 ~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~ 433 (1133)
.....+.|+++|++|+|++++++++|+|+||+|++||+++||||||||||||+++|+|+|+|++|.+.
T Consensus 608 ~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~------------ 675 (1495)
T PLN03232 608 LQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV------------ 675 (1495)
T ss_pred cCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE------------
Confidence 11123479999999999864446799999999999999999999999999999999999999998763
Q ss_pred HHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHH
Q 041277 434 WLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARA 513 (1133)
Q Consensus 434 ~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa 513 (1133)
++|++|+||+|+||+|++||||||.||.+ .+++++.++++.|+++++++.+|+|++|.|||+|.+|||||||||+||||
T Consensus 676 ~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~-~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARA 754 (1495)
T PLN03232 676 VIRGSVAYVPQVSWIFNATVRENILFGSD-FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARA 754 (1495)
T ss_pred EecCcEEEEcCccccccccHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHH
Confidence 24678999999999999999999999985 68899999999999999999999999999999999999999999999999
Q ss_pred HhhCCCEEEEeCcccCCChHHHHHHH-HHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhccccchhh
Q 041277 514 IIKAPRILLLDEATSALDSESERVVQ-EALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLY 592 (1133)
Q Consensus 514 l~~~~~illlDE~ts~lD~~~~~~i~-~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 592 (1133)
++++|+|+||||||||||+++++.+. ++++...+++|+|+||||++.++.||+|++|++|+++++|+|+|+++ .++.|
T Consensus 755 ly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~-~~~~~ 833 (1495)
T PLN03232 755 VYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSK-SGSLF 833 (1495)
T ss_pred HhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHh-cchhH
Confidence 99999999999999999999988765 55776678999999999999999999999999999999999999997 67889
Q ss_pred HHHHHhhcCCCCCCCCcccccccccccCCCCCCcccccccccccccccCccccCCCCCCCcchhhcCCCchHHHHHHHhh
Q 041277 593 TSLVRLQTTTPDDNNNATMHSLASKSSNMDMNSTSSRRLSIVSLSSSANSFAQGRGASQSNEEDIKKLPVPSFRRLVALN 672 (1133)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 672 (1133)
.++++.+...++..+..+...... ...... ............. ..........+++....+...++.+..|.
T Consensus 834 ~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~e~~~~g~v~~~vy~~y~ 905 (1495)
T PLN03232 834 KKLMENAGKMDATQEVNTNDENIL------KLGPTV-TIDVSERNLGSTK-QGKRGRSVLVKQEERETGIISWNVLMRYN 905 (1495)
T ss_pred HHHHHhcccccccccccccccccc------cccccc-ccccccccccccc-ccccchhhhhhHHHHhcCcccHHHHHHHH
Confidence 988876543211111000000000 000000 0000000000000 00000000001111122333444455554
Q ss_pred ccch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 673 APEW--KQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINIIQHYNFAYMGEH 750 (1133)
Q Consensus 673 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 750 (1133)
+... +...+.+++.++..++.....+|+..|.+.. .........|+.+|++++++..++.+++.+++.+.+.+
T Consensus 906 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~-----~~~~~~~~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~ 980 (1495)
T PLN03232 906 KAVGGLWVVMILLVCYLTTEVLRVSSSTWLSIWTDQS-----TPKSYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLH 980 (1495)
T ss_pred HHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4322 2222222222222333333334444433211 00011234577788888888999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 041277 751 LTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWRLALVMIA 830 (1133)
Q Consensus 751 ~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~w~l~lv~l~ 830 (1133)
++.++|++++++++++|++||| ++++|+++||+++|++.+++.++..+..++..++.++++++++++++|... ++
T Consensus 981 ~~~~lr~~l~~~ll~~p~~ff~--~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~~~~~~~~~---~~ 1055 (1495)
T PLN03232 981 AAKRLHDAMLNSILRAPMLFFH--TNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTISL---WA 1055 (1495)
T ss_pred HHHHHHHHHHHHHHcCCeeeeC--cCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 9999999999999999999998 689999999999999999999999999999988888888887777775433 23
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q 041277 831 VQPLVIICFYAR---RVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSWYAGI 907 (1133)
Q Consensus 831 ~~pl~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 907 (1133)
++|+.+++.... .+..++..+......+++.+++.|+++|++|||+|+.++++.+++.+..+...+..........
T Consensus 1056 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 1134 (1495)
T PLN03232 1056 IMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTSSNR- 1134 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 334433333222 2233344455566667889999999999999999999999988888877766554433222211
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHh-cCCC----C-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhc
Q 041277 908 GLAFSQSLASCTWALDFWY-GGRLIA-DGYI----S-SKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMD 980 (1133)
Q Consensus 908 ~~~~~~~~~~~~~~~~~~~-g~~l~~-~g~~----t-~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~ 980 (1133)
+..+.. ..+. .+++++ +...+. .+.+ + .+.+..++.+......++..+...+.+++.++.+++|+.++++
T Consensus 1135 wl~~~~--~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~ 1211 (1495)
T PLN03232 1135 WLTIRL--ETLG-GVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYID 1211 (1495)
T ss_pred HHHHHH--HHHH-HHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 111111 1111 222333 333333 2332 1 1223334555666677788888899999999999999999998
Q ss_pred cCCCCCCCCCCCCCC--CCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCC
Q 041277 981 RYTKIEPEDPEGHQP--ERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLK 1058 (1133)
Q Consensus 981 ~~~~~~~~~~~~~~~--~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~ 1058 (1133)
.+++.+.......++ .+..|+|+|+||+|+|+++ .++||+|+||+|+|||+||||||||||||||+++|+|+|+|++
T Consensus 1212 ~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~ 1290 (1495)
T PLN03232 1212 LPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEK 1290 (1495)
T ss_pred CCccccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCC
Confidence 765432211111111 2346899999999999532 2469999999999999999999999999999999999999999
Q ss_pred CeEEECCcccCCCChhHHhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1059 GDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1059 G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
|+|+|||+||+++++++||++|++|||||+||+|||||||++++ +++|||+|+|+++|+++|||+++|+||||
T Consensus 1291 G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~--~~sdeei~~al~~a~l~~~I~~lp~GLdt 1363 (1495)
T PLN03232 1291 GRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS--EHNDADLWEALERAHIKDVIDRNPFGLDA 1363 (1495)
T ss_pred ceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC--CCCHHHHHHHHHHcCCHHHHHhCcCCCCc
Confidence 99999999999999999999999999999999999999999874 58999999999999999999999999997
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-128 Score=1284.45 Aligned_cols=1052 Identities=16% Similarity=0.170 Sum_probs=779.5
Q ss_pred HHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 45 GDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACFLEGYCWTRTGERQATRMRARYLKAVL 124 (1133)
Q Consensus 45 ~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll 124 (1133)
+..++....|++++.+++.+.... .. . .....++..++++.++..++.....+...+.+.++...++..+|+|++
T Consensus 328 ~~~~~~~~~P~ll~~li~~~~~~~--~~-~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~iy~K~L 402 (1522)
T TIGR00957 328 IHDLMMFIGPQILSLLIRFVNDPM--AP-D--WQGYFYTGLLFVCACLQTLILHQYFHICFVSGMRIKTAVMGAVYRKAL 402 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCC--cc-c--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444568889998764321 10 0 011111222222233333443333444567889999999999999999
Q ss_pred hCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 125 RQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLWRLAIVGFPFVVLLVIPGLMYGR 204 (1133)
Q Consensus 125 ~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~ 204 (1133)
+++...+++ . ++|+++|++++|++++.+.. ..+..++..++.+++++++++..-...+++.++++++++++..++.+
T Consensus 403 ~l~~~~~~~-~-~~G~i~nl~s~D~~~i~~~~-~~~~~~~~~~~~i~~~~~ll~~~~g~~~l~~l~~~~~~~~~~~~~~~ 479 (1522)
T TIGR00957 403 VITNSARKS-S-TVGEIVNLMSVDAQRFMDLA-TYINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLMVPLNAVMAM 479 (1522)
T ss_pred hCChhhcCC-C-CHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999985 6 89999999999999998865 34455555555555555444433333456666777788888888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 205 TLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGLKQGLAKGLAIGSNGVTFGIWSFLCY 284 (1133)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (1133)
++++.+++.++..+++.+.+.|.++||++||+|+||+.+.+++++.++++.+...+......+......... ..+.++.
T Consensus 480 ~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 558 (1522)
T TIGR00957 480 KTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCTP-FLVALIT 558 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 999999999999999999999999999999999999999999999998888776666655544332111111 1122233
Q ss_pred HHHHHHHh--cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcccccc-cccccE
Q 041277 285 YGSRMVMY--HGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEILE-NVLGEV 361 (1133)
Q Consensus 285 ~g~~~v~~--~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~-~~~~~i 361 (1133)
++.+.+.. +.++++.+++.+.++.....|+..++..+..+.++.+|.+||.++++.+++.+ ......... ...+.|
T Consensus 559 f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~-~~~~~~~~~~~~~~~i 637 (1522)
T TIGR00957 559 FAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEP-DSIERRTIKPGEGNSI 637 (1522)
T ss_pred HHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccc-ccccccccCCCCCCcE
Confidence 45566653 56899999988877777888999999999999999999999999998654321 110001111 112379
Q ss_pred EEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceE
Q 041277 362 EFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGL 441 (1133)
Q Consensus 362 ~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 441 (1133)
+++|++|+|++. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| +|+|
T Consensus 638 ~~~~~~~~~~~~-~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i~y 703 (1522)
T TIGR00957 638 TVHNATFTWARD-LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-------------SVAY 703 (1522)
T ss_pred EEEEeEEEcCCC-CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC-------------EEEE
Confidence 999999999753 34699999999999999999999999999999999999999999999997 5999
Q ss_pred EecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEE
Q 041277 442 VSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRIL 521 (1133)
Q Consensus 442 v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~il 521 (1133)
|+|+||+|++||+|||.+|.+ .++++..++++.+++.++++.+|+|++|.+|++|.+|||||||||+||||++++|+|+
T Consensus 704 v~Q~~~l~~~Ti~eNI~~g~~-~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~il 782 (1522)
T TIGR00957 704 VPQQAWIQNDSLRENILFGKA-LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIY 782 (1522)
T ss_pred EcCCccccCCcHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999999875 4567778888889999999999999999999999999999999999999999999999
Q ss_pred EEeCcccCCChHHHHHHHHHHHH---HhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhccccchhhHHHHHh
Q 041277 522 LLDEATSALDSESERVVQEALDK---AVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRL 598 (1133)
Q Consensus 522 llDE~ts~lD~~~~~~i~~~l~~---~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 598 (1133)
|||||||+||+++++.+.+.+.+ ..+++|+|+|||+++.+..||+|++|++|+++++|+++++.+ +++.|.++...
T Consensus 783 lLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~-~~~~~~~l~~~ 861 (1522)
T TIGR00957 783 LFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQ-RDGAFAEFLRT 861 (1522)
T ss_pred EEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHh-cchhHHHHHHh
Confidence 99999999999999999988853 456899999999999999999999999999999999999987 57788888764
Q ss_pred hcCCCCCCCCccc---c-cccccccC--C---CC---CCccccc----cccccccc-----ccCccccCCCC-C-C-Ccc
Q 041277 599 QTTTPDDNNNATM---H-SLASKSSN--M---DM---NSTSSRR----LSIVSLSS-----SANSFAQGRGA-S-Q-SNE 654 (1133)
Q Consensus 599 ~~~~~~~~~~~~~---~-~~~~~~~~--~---~~---~~~~~~~----~~~~~~~~-----~~~~~~~~~~~-~-~-~~~ 654 (1133)
+....+.+..+.. . ........ . +. .+....+ ........ +..+....... . . ..+
T Consensus 862 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 941 (1522)
T TIGR00957 862 YAPDEQQGHLEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASSSDSGDQSRHHGSSAELQKAEAKEETWKLME 941 (1522)
T ss_pred hccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccchhhhHH
Confidence 4322111000000 0 00000000 0 00 0000000 00000000 00000000000 0 0 001
Q ss_pred hhhcCCCchHHHHHHHhhcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHH
Q 041277 655 EDIKKLPVPSFRRLVALNAP-EWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFT 733 (1133)
Q Consensus 655 ~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (1133)
++.+..+...+..+..|.+. .+...++.+++.++..++....++|++.|.+....... ......|..+|++++++.
T Consensus 942 ~e~~~~g~v~~~~y~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~---~~~~~~~~~iy~~l~i~~ 1018 (1522)
T TIGR00957 942 ADKAQTGQVELSVYWDYMKAIGLFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGT---QNNTSLRLSVYGALGILQ 1018 (1522)
T ss_pred HHHHhcCcccHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCC---CCCcchHHHHHHHHHHHH
Confidence 11112222233334444332 22222222333333444445556666666542111000 111234556788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHH
Q 041277 734 LVINIIQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIA 813 (1133)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~ 813 (1133)
.++.+++.+++.+++.++++++|++++++++++|++||| ++++|+++|||++|++.++..++..+..++..++.+++.
T Consensus 1019 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~--~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~ 1096 (1522)
T TIGR00957 1019 GFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFE--RTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGA 1096 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhc--cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888889999999999999999999999999999998 589999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhc
Q 041277 814 FTMGLFIAWRLALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQG 893 (1133)
Q Consensus 814 ~~~~~~~~w~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~ 893 (1133)
++++++.+|.+++++++++++.++...++.+..++..+...+..+++.+++.|+++|++|||+|+.|+++.+++.+..+.
T Consensus 1097 li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~ 1176 (1522)
T TIGR00957 1097 LIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDE 1176 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHH
Confidence 98888888876665555555444444444444555555666677889999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 041277 894 PRRESIRQSWYAGIGLAFSQSLASCTWALDFWYGGRLIA-DGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAV 972 (1133)
Q Consensus 894 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~-~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 972 (1133)
..+..........+.......+.. +++++.++..+. .|.+++|.+.+++.+......++..+...+.+++.++.|+
T Consensus 1177 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~ 1253 (1522)
T TIGR00957 1177 NQKAYYPSIVANRWLAVRLECVGN---CIVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAV 1253 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877765544444433333333322 233344444443 5789999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCCCCCCCCCCC--CCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHH
Q 041277 973 GSVFAVMDRYTKIEPEDPEGHQP--ERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLI 1050 (1133)
Q Consensus 973 ~ri~~~l~~~~~~~~~~~~~~~~--~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL 1050 (1133)
+|+.++++.+++.+...+...++ .+..|+|+|+||+|+|+++. ++||+||||+|+|||+||||||||||||||+++|
T Consensus 1254 eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~-~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL 1332 (1522)
T TIGR00957 1254 ERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDL-DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGL 1332 (1522)
T ss_pred HHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCC-cccccceeEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 99999997655432111111111 13468999999999997542 3699999999999999999999999999999999
Q ss_pred hhhcCCCCCeEEECCcccCCCChhHHhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccc
Q 041277 1051 ERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEG 1130 (1133)
Q Consensus 1051 ~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G 1130 (1133)
+|||||++|+|+|||+||+++++++||++|++|||||+||+|||||||++. ++++|||||+|+++|+++|||++||+|
T Consensus 1333 ~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~--~~~sdeei~~al~~a~l~~~I~~lp~G 1410 (1522)
T TIGR00957 1333 FRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPF--SQYSDEEVWWALELAHLKTFVSALPDK 1410 (1522)
T ss_pred hcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcc--cCCCHHHHHHHHHHcCcHHHHhhCccC
Confidence 999999999999999999999999999999999999999999999999754 258999999999999999999999999
Q ss_pred cCC
Q 041277 1131 YDT 1133 (1133)
Q Consensus 1131 ~dT 1133 (1133)
|||
T Consensus 1411 Ldt 1413 (1522)
T TIGR00957 1411 LDH 1413 (1522)
T ss_pred CCc
Confidence 997
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-123 Score=1223.95 Aligned_cols=1056 Identities=17% Similarity=0.204 Sum_probs=772.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 38 LGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACFLEGYCWTRTGERQATRMRA 117 (1133)
Q Consensus 38 ~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 117 (1133)
++++..++..++....|++++.+++.+... +. .+ .....+.+.+++..++..++.....+...+.+.++...++.
T Consensus 248 ~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~---~~-~~-~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~~r~~L~~ 322 (1560)
T PTZ00243 248 WQIPFKLLSDVCTLTLPVLLKYFVKFLDAD---NA-TW-GRGLGLVLTLFLTQLIQSVCLHRFYYISIRCGLQYRSALNA 322 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---Cc-ch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555556788888865322 11 11 10111112222333344445555556667778888888899
Q ss_pred HHHHHHHhCCchhhcc-CCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 041277 118 RYLKAVLRQDVGYFDL-HVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLWRLAIVGFPFVVLLV 196 (1133)
Q Consensus 118 ~~~~~ll~~~~~~f~~-~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~ 196 (1133)
.+|+|+++++...+.. +. ++|+++|++++|++++.+++.. +..++..++.+++++++++.+..+.++++++++++.+
T Consensus 323 ~if~K~l~ls~~~~~~~~~-~~G~i~nl~s~Dv~~i~~~~~~-~~~l~~~Pl~li~~~~lL~~~lG~~al~gv~vl~v~~ 400 (1560)
T PTZ00243 323 LIFEKCFTISSKSLAQPDM-NTGRIINMMSTDVERINSFMQY-CMYLWSSPMVLLLSILLLSRLVGWCALMAVAVLLVTL 400 (1560)
T ss_pred HHHHHHHhCChhhhCCCCC-CHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 9999999999877752 13 7899999999999999999844 5667777788888788777777778899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 041277 197 IPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGLKQGLAKGLAIG-SNGVT 275 (1133)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 275 (1133)
++..++.++..+.+++.++..+++.+.+.|.++|||+||+++||+.+.+++++.++++.+...+......+... .....
T Consensus 401 pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~El~~l~~~~~~~~~~~~~~~~~p 480 (1560)
T PTZ00243 401 PLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDVQLARVATSFVNNATP 480 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988887777766655444 22222
Q ss_pred HHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-----CCCCC-
Q 041277 276 FGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEMIKRVPKI-----DSDSM- 349 (1133)
Q Consensus 276 ~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~-----~~~~~- 349 (1133)
.+. .++.++++.+..+.+|++.+|+++.++..+..|+..++..+..+.++.+|++||.++++.++.. +..+.
T Consensus 481 ~l~--~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~ 558 (1560)
T PTZ00243 481 TLM--IAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFLECDNATCSTVQDMEEYW 558 (1560)
T ss_pred HHH--HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccccchhhc
Confidence 222 2234567788889999999999999999999999999999999999999999999999764310 00000
Q ss_pred -------cc-c--------------c-----------------------------cccccccEEEEEEEEEcCCC-----
Q 041277 350 -------EG-E--------------I-----------------------------LENVLGEVEFKCVQFAYPSR----- 373 (1133)
Q Consensus 350 -------~~-~--------------~-----------------------------~~~~~~~i~~~~v~~~y~~~----- 373 (1133)
.. . + .....+.+.++|++|+++..
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (1560)
T PTZ00243 559 REQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSVVVEDTDYGSPSSASRHI 638 (1560)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccccccccccccccccccccc
Confidence 00 0 0 00011346777777764310
Q ss_pred --------------------------------CCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEE
Q 041277 374 --------------------------------PESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEII 421 (1133)
Q Consensus 374 --------------------------------~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~ 421 (1133)
.++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.
T Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~ 718 (1560)
T PTZ00243 639 VEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVW 718 (1560)
T ss_pred ccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEE
Confidence 124589999999999999999999999999999999999999999998
Q ss_pred ECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCC
Q 041277 422 LDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMS 501 (1133)
Q Consensus 422 ~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LS 501 (1133)
++ ++||||||+||+|++||+|||.++.+ .+.+++.++++.++++++++.+|+|++|.+|++|.+||
T Consensus 719 ~~-------------~~i~yv~Q~~~l~~~Tv~enI~~~~~-~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LS 784 (1560)
T PTZ00243 719 AE-------------RSIAYVPQQAWIMNATVRGNILFFDE-EDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLS 784 (1560)
T ss_pred EC-------------CeEEEEeCCCccCCCcHHHHHHcCCh-hhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCC
Confidence 64 37999999999999999999999864 34566778888899999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHH-HHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeecC
Q 041277 502 GGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQE-ALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGS 580 (1133)
Q Consensus 502 gGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~-~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~ 580 (1133)
|||||||+||||++++|+|+|||||||+||+++++.+.+ ++....+|+|+|+|||+++.+..||+|++|++|+++++|+
T Consensus 785 GGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G~ 864 (1560)
T PTZ00243 785 GGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGS 864 (1560)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEecC
Confidence 999999999999999999999999999999998777654 4555557899999999999999999999999999999999
Q ss_pred cchhccccchhhHHHHHhhcCCCCCCCCcccccccccccCCCC-CCcccccccccccccccCccccCCCCCCCcchhhcC
Q 041277 581 HDELIQAESGLYTSLVRLQTTTPDDNNNATMHSLASKSSNMDM-NSTSSRRLSIVSLSSSANSFAQGRGASQSNEEDIKK 659 (1133)
Q Consensus 581 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (1133)
++++++ ++.|..+........+..+.....+.......... ......................+.......+++.+.
T Consensus 865 ~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~ 942 (1560)
T PTZ00243 865 SADFMR--TSLYATLAAELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAEGGDGAALDAAAGRLMTREEKA 942 (1560)
T ss_pred HHHHHh--ChHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccchhhhHHHHh
Confidence 999986 34577776543221110000000000000000000 000000000000000000000000000000111111
Q ss_pred CCchHHHHHHHhhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHHHHHH
Q 041277 660 LPVPSFRRLVALNAPE--WKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVIN 737 (1133)
Q Consensus 660 ~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (1133)
.+...++.+..|.+.. +......+++.++..++.....+|++.|..... ......|+.+|+++.++..++.
T Consensus 943 ~g~v~~~~y~~Y~~~~g~~~~~~~~l~~~~~~~~~~~~~~~wl~~w~~~~~-------~~~~~~~l~~y~~~~~~~~~~~ 1015 (1560)
T PTZ00243 943 SGSVPWSTYVAYLRFCGGLHAAGFVLATFAVTELVTVSSGVWLSMWSTRSF-------KLSAATYLYVYLGIVLLGTFSV 1015 (1560)
T ss_pred cCcccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-------CCCcccHHHHHHHHHHHHHHHH
Confidence 2222333333333321 111111111122222333334444544432111 1112345666766666666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 041277 738 IIQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMG 817 (1133)
Q Consensus 738 ~~~~~~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~ 817 (1133)
+++.+.....+.+.++++|+++|++++++|++||| ++++|+++|||++|++.++..++..+..++..++.+++.++++
T Consensus 1016 ~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd--~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~ 1093 (1560)
T PTZ00243 1016 PLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFD--TTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVT 1093 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhcc--CCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777788888999999999999999999999 5899999999999999999999999999999999999999888
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcH
Q 041277 818 LFIAWRLALVMIAVQPLVIICFY---ARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGP 894 (1133)
Q Consensus 818 ~~~~w~l~lv~l~~~pl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~ 894 (1133)
++.+|.+.+ +++|+.+++.. ++.+..+...+......+++.+++.|+++|++|||+|+.++++.++|.+..+.+
T Consensus 1094 ~~~~p~~~~---~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~ 1170 (1560)
T PTZ00243 1094 SASQPFVLV---ALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVV 1170 (1560)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHH
Confidence 888885433 33444333332 333334444445556677889999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 041277 895 RRESIRQSWYAGIGLAFSQSLASCTWALDFWYGGRL--IADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAV 972 (1133)
Q Consensus 895 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l--~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 972 (1133)
.+..........+......++..+..+++.+++... ...+.+++|.+..++.+......++..+...+.+++.++.++
T Consensus 1171 ~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~ 1250 (1560)
T PTZ00243 1171 YSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSV 1250 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887766555554544444544444444444444433 334557888888888888888899999999999999999999
Q ss_pred HHHHHHhccCCCCC-CC-------------------------C--CCCCCC-CCCcccEEEEeEEEECCCCCCCccccCc
Q 041277 973 GSVFAVMDRYTKIE-PE-------------------------D--PEGHQP-ERITGNIELQNVHFAYPARPDVMIFEGF 1023 (1133)
Q Consensus 973 ~ri~~~l~~~~~~~-~~-------------------------~--~~~~~~-~~~~g~I~f~nVsF~Y~~~~~~~vL~~i 1023 (1133)
+|+.++++..++.+ ++ + ++...+ ++..|.|+|+||+|+|+++ .++||+||
T Consensus 1251 eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~-~~~vL~~v 1329 (1560)
T PTZ00243 1251 ERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREG-LPLVLRGV 1329 (1560)
T ss_pred HHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCC-CCceeecc
Confidence 99999997543211 00 0 000001 1235899999999999643 34699999
Q ss_pred cEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcccccccccccccccHHHHhccCCC
Q 041277 1024 SIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGAS 1103 (1133)
Q Consensus 1024 sl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~ 1103 (1133)
||+|+|||+||||||||||||||+++|+|||+|++|+|+|||+||+++++++||++|++|||||+||+|||||||+++
T Consensus 1330 sf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~-- 1407 (1560)
T PTZ00243 1330 SFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPF-- 1407 (1560)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcc--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred CCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1104 DEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1104 ~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
++++|+|||+||++|+++|||++||+||||
T Consensus 1408 ~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt 1437 (1560)
T PTZ00243 1408 LEASSAEVWAALELVGLRERVASESEGIDS 1437 (1560)
T ss_pred cCCCHHHHHHHHHHCCChHHHhhCcccccc
Confidence 368999999999999999999999999997
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-119 Score=1194.43 Aligned_cols=1042 Identities=17% Similarity=0.204 Sum_probs=745.4
Q ss_pred HHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh
Q 041277 51 PLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACFLEGYCWTRTGERQATRMRARYLKAVLRQDVGY 130 (1133)
Q Consensus 51 p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~ 130 (1133)
...|++++.+++.+.... ... ......+++.+++..++..++.....+...+.+.++...+...+|+|+++++...
T Consensus 97 ~~~P~ll~~li~~~~~~~--~~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~~iy~K~L~l~~~~ 172 (1490)
T TIGR01271 97 AVQPLLLGRIIASYDPFN--APE--REIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLIYKKTLKLSSRV 172 (1490)
T ss_pred HHHHHHHHHHHHHhccCC--CCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 344467888888763210 000 0011112222223333444444455555666777777777778899999999999
Q ss_pred hccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 131 FDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLA 210 (1133)
Q Consensus 131 f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~ 210 (1133)
+++ . ++|+++|++++|++++.+++... ..++..++.+++++++++...++.+++.++++++++++..++.+++.+.+
T Consensus 173 ~~~-~-~~g~i~nl~s~Dv~~i~~~~~~~-~~~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~~~~~~~~~~~~~~~~ 249 (1490)
T TIGR01271 173 LDK-I-STGQLVSLLSNNLNKFDEGLALA-HFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQACLGQKMMPYR 249 (1490)
T ss_pred hcC-C-CHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 985 6 89999999999999999987643 44556666666667777666667888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 211 RKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGLKQGLAKGLAIGSNGVTFGIWSFLCYYGSRMV 290 (1133)
Q Consensus 211 ~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v 290 (1133)
++.++..+++.+.+.|.++|||+||+|+||+.+.+++++.++++.+...+......+....... ....+.++.++++.+
T Consensus 250 ~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~y~~ 328 (1490)
T TIGR01271 250 DKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAFFF-SGFFVVFLSVVPYAL 328 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998888877776665443332222 222334556667766
Q ss_pred HhcCccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcccccccccccEEEEEEEEE
Q 041277 291 MYHGAQGGTVFAVGASIAVGGLALG-AGLPNLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFA 369 (1133)
Q Consensus 291 ~~~~~t~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~ 369 (1133)
..+ ++++.+|+++.++..+..++. .++..+..+.++.+|++||.++++.++..+ .. . ......++++|++|+
T Consensus 329 ~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~-~~---~--~~~~~~i~~~~~~f~ 401 (1490)
T TIGR01271 329 IKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKT-LE---Y--NLTTTEVEMVNVTAS 401 (1490)
T ss_pred hCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccc-cc---c--cCCCCceEEecceEe
Confidence 544 688999998877777767764 577788999999999999999997653211 11 0 011235899999999
Q ss_pred cCCCC-------------------------------CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCcc
Q 041277 370 YPSRP-------------------------------ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGG 418 (1133)
Q Consensus 370 y~~~~-------------------------------~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G 418 (1133)
|+... .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G 481 (1490)
T TIGR01271 402 WDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEG 481 (1490)
T ss_pred cCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 95310 13589999999999999999999999999999999999999999
Q ss_pred EEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCC
Q 041277 419 EIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGV 498 (1133)
Q Consensus 419 ~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~ 498 (1133)
+|.++| +|+||+|+||+|++||+|||.||.+ .+.++..++++.+++.++++.+|+|++|.+|++|.
T Consensus 482 ~i~~~g-------------~iayv~Q~~~l~~~Ti~eNI~~g~~-~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~ 547 (1490)
T TIGR01271 482 KIKHSG-------------RISFSPQTSWIMPGTIKDNIIFGLS-YDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGI 547 (1490)
T ss_pred eEEECC-------------EEEEEeCCCccCCccHHHHHHhccc-cchHHHHHHHHHHhHHHHHHhccccccccccCcCC
Confidence 999998 5999999999999999999999864 44556677778888999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHH-HHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEe
Q 041277 499 QMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQE-ALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVME 577 (1133)
Q Consensus 499 ~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~-~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~ 577 (1133)
+|||||||||+||||++++|+|+||||||||||+++++.+.+ ++.+..+++|+|+|||+++.+..||+|++|++|++++
T Consensus 548 ~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~ 627 (1490)
T TIGR01271 548 TLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYF 627 (1490)
T ss_pred CcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999887 5677778999999999999998999999999999999
Q ss_pred ecCcchhccccchhhHHHHHhhcC------CC--------------C--C-----CCC------ccccc--ccc------
Q 041277 578 TGSHDELIQAESGLYTSLVRLQTT------TP--------------D--D-----NNN------ATMHS--LAS------ 616 (1133)
Q Consensus 578 ~g~~~~l~~~~~~~~~~~~~~~~~------~~--------------~--~-----~~~------~~~~~--~~~------ 616 (1133)
.|+++++.+ .++.|.+.+..... .. + . ++. ++... ...
T Consensus 628 ~g~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (1490)
T TIGR01271 628 YGTFSELQA-KRPDFSSLLLGLEAFDNFSAERRNSILTETLRRVSIDGDSTVFSGPETIKQSFKQPPPEFAEKRKQSIIL 706 (1490)
T ss_pred EcCHHHHHh-cChHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999986 45556555531000 00 0 0 000 00000 000
Q ss_pred -----------------c---ccCCCCC-Ccc----------------cccccc----------c--------cc---cc
Q 041277 617 -----------------K---SSNMDMN-STS----------------SRRLSI----------V--------SL---SS 638 (1133)
Q Consensus 617 -----------------~---~~~~~~~-~~~----------------~~~~~~----------~--------~~---~~ 638 (1133)
. ....+.. +.. ..+... . .. ..
T Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1490)
T TIGR01271 707 NPIASARKFSFVQMGPQKAQATTIEDAVREPSERKFSLVPEDEQGEESLPRGNQYHHGLQHQAQRRQSVLQLMTHSNRGE 786 (1490)
T ss_pred cccccccccccccccccccccccccchhcccccccccccccccccccccccccccccccccccccccchhhccccccccc
Confidence 0 0000000 000 000000 0 00 00
Q ss_pred ccC-----cc------c------cC-----CC--CC------CC----------cchhhcCCCchHHHHHHHhhcc--ch
Q 041277 639 SAN-----SF------A------QG-----RG--AS------QS----------NEEDIKKLPVPSFRRLVALNAP--EW 676 (1133)
Q Consensus 639 ~~~-----~~------~------~~-----~~--~~------~~----------~~~~~~~~~~~~~~~l~~~~~~--~~ 676 (1133)
... .. . .. .. .+ .+ .+++....+...++.++.|.+. .+
T Consensus 787 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vY~~Y~~~~g~~ 866 (1490)
T TIGR01271 787 NRREQLQTSFRKKSSITQQNELASELDIYSRRLSKDSVYEISEEINEEDLKECFADERENVFETTTWNTYLRYITTNRNL 866 (1490)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhHHHHhhcCcccHHHHHHHHHhcCcH
Confidence 000 00 0 00 00 00 00 0001111122333334444332 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hc-CChh-H-H---------hhhhhHH-HHHHHHHHHHHHHHHHHHH
Q 041277 677 KQATLGCVGATLFGAVQPIYAFAMGSMISVY--FL-TDHD-E-I---------KKKTSIY-AFCFLGLAVFTLVINIIQH 741 (1133)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~-~-~---------~~~~~~~-~~~~~~~~~~~~~~~~~~~ 741 (1133)
..+.+.+++.++..++.....+|+..+.... +. .... . . ......| +.+|++++++..++.+++.
T Consensus 867 ~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 946 (1490)
T TIGR01271 867 VFVLIFCLVIFLAEVAASLLGLWLITDNPSAPNYVDQQHANASSPDVQKPVIITPTSAYYIFYIYVGTADSVLALGFFRG 946 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHhcccccccccccccccCCCccccccccccCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 2222223333333444444455554332100 00 0000 0 0 0011122 3445555555667778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 041277 742 YNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIA 821 (1133)
Q Consensus 742 ~~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 821 (1133)
+++.+.+.+++.++|.+++++++++|++||+ ++|+|+++|||++|++.+++.++..+..++..++.+++.++++++++
T Consensus 947 ~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~--~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~ 1024 (1490)
T TIGR01271 947 LPLVHTLLTVSKRLHEQMLHSVLQAPMAVLN--TMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQ 1024 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHhC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998 68999999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHHH
Q 041277 822 WRLALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQ 901 (1133)
Q Consensus 822 w~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~ 901 (1133)
|.+.+++++++.++++...++.+..++..+......+++.+++.|+++|+.|||+|+.++++.++|.+..+...+.....
T Consensus 1025 p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~ 1104 (1490)
T TIGR01271 1025 PYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLY 1104 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 87654433332222222233333344445555666788999999999999999999999999999999988665443332
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 041277 902 SWYAGIGLAFSQSLASCTW--ALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVM 979 (1133)
Q Consensus 902 ~~~~~~~~~~~~~~~~~~~--~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l 979 (1133)
.....+.......+..+.. +++++++. ..++.|.+..++.+...+..++..+...+.+++..+.+++|+.+++
T Consensus 1105 ~~~~~wl~~~~~~i~~~~~~~~~~l~~~~-----~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~ 1179 (1490)
T TIGR01271 1105 LSTLRWFQMRIDIIFVFFFIAVTFIAIGT-----NQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFI 1179 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2222222222222211111 11122222 2344555555566666677778888888899999999999999999
Q ss_pred ccCCCCCCCCCC--------------CCCC--CCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCH
Q 041277 980 DRYTKIEPEDPE--------------GHQP--ERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGK 1043 (1133)
Q Consensus 980 ~~~~~~~~~~~~--------------~~~~--~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGK 1043 (1133)
+.+++.+...+. ...+ .+..|+|+|+||+|+|++. .++||+|+||+|+|||||||||||||||
T Consensus 1180 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~is~~I~~GekvaIvGrSGsGK 1258 (1490)
T TIGR01271 1180 DLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA-GRAVLQDLSFSVEGGQRVGLLGRTGSGK 1258 (1490)
T ss_pred cCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC-CcceeeccEEEEcCCCEEEEECCCCCCH
Confidence 765543211000 0011 1345899999999999743 4579999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHH
Q 041277 1044 STIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDF 1123 (1133)
Q Consensus 1044 STL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~df 1123 (1133)
|||+++|+|+|+ ++|+|+|||+||+++++++||++|++|||||+||+|||||||++. ++++|+|+|+||++++++++
T Consensus 1259 STLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~--~~~tdeei~~aL~~~~L~~~ 1335 (1490)
T TIGR01271 1259 STLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPY--EQWSDEEIWKVAEEVGLKSV 1335 (1490)
T ss_pred HHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcc--cCCCHHHHHHHHHHCCCHHH
Confidence 999999999998 799999999999999999999999999999999999999999765 35799999999999999999
Q ss_pred HhhcccccCC
Q 041277 1124 IAGLNEGYDT 1133 (1133)
Q Consensus 1124 I~~LP~G~dT 1133 (1133)
|.++|+||||
T Consensus 1336 i~~lp~GLdt 1345 (1490)
T TIGR01271 1336 IEQFPDKLDF 1345 (1490)
T ss_pred HHhCcccccc
Confidence 9999999997
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-110 Score=964.13 Aligned_cols=574 Identities=36% Similarity=0.589 Sum_probs=536.0
Q ss_pred hHHHHHhhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 041277 20 SFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACFL 99 (1133)
Q Consensus 20 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (1133)
.+++++.|+++. |.++..+.++.++........|.+.|+++|.+.... + ....+...+..+.++.++..++.++
T Consensus 134 ~~~rl~~l~~~~-~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~--~---~~~~~~~~~~~l~~l~~~~a~~~~~ 207 (716)
T KOG0058|consen 134 LLKRLLGLLKPE-WKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGD--D---SADALKRACTILLGLFLIGALANAI 207 (716)
T ss_pred HHHHHHHHhchh-HHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhcc--c---hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999775 555667777777777777777899999999876511 1 1233444566677778889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 041277 100 EGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFL 179 (1133)
Q Consensus 100 ~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (1133)
+.+++.+.++++..++|..+|+++++++++|||. + .+|+++||++.|++.+.+.++..+...+.+.+..++++++|++
T Consensus 208 r~~~~~~a~~rv~~rlR~~lF~sil~QdiaFFD~-n-ktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~ 285 (716)
T KOG0058|consen 208 RGGLLQYAGERVVARLRTDLFRSLLRQDIAFFDE-N-KTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFS 285 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc-C-CccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhh
Confidence 9999999999999999999999999999999996 6 8999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHH
Q 041277 180 MLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGL 259 (1133)
Q Consensus 180 ~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 259 (1133)
++|+|+++.++.+|+++++..+++++.++..++.|++.+++++..+|.+++|||||+|+.|+.+.+||.+..++..+...
T Consensus 286 ~S~~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~ 365 (716)
T KOG0058|consen 286 LSWRLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSK 365 (716)
T ss_pred hhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041277 260 KQGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEMI 338 (1133)
Q Consensus 260 ~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l 338 (1133)
|.+...+++.. ..+..++....++|||++++..|.+|.|.+.+|++|......++..+...+..+.++..|.+|++|++
T Consensus 366 k~a~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~ 445 (716)
T KOG0058|consen 366 KEAVAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELM 445 (716)
T ss_pred HHHHHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHh
Confidence 99999988888 88888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCcccccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCcc
Q 041277 339 KRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGG 418 (1133)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G 418 (1133)
|.+|..+.+ ....|....|.|+|+||+|+||.+|+.+||+|+||+|+|||++|+||||||||||++++|.++|+|++|
T Consensus 446 dr~P~i~~~--G~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG 523 (716)
T KOG0058|consen 446 DRKPRIPLT--GTLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSG 523 (716)
T ss_pred ccCCCCCCC--CccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCC
Confidence 999987653 222233578999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCC
Q 041277 419 EIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGV 498 (1133)
Q Consensus 419 ~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~ 498 (1133)
+|.+||+||++++.++||++||+|.|||.||++||+|||.||.++.++|++.+|++.+++|+||.++|+||||.|||+|.
T Consensus 524 ~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~ 603 (716)
T KOG0058|consen 524 RILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGS 603 (716)
T ss_pred eEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEee
Q 041277 499 QMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMET 578 (1133)
Q Consensus 499 ~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~ 578 (1133)
+|||||||||||||||++||.||||||+|||||.++|..++++|.+..+++|||+|+|||+++++||+|+|+++|+++|.
T Consensus 604 qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~ 683 (716)
T KOG0058|consen 604 QLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEM 683 (716)
T ss_pred cccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcchhccccchhhHHHHHhhcCCC
Q 041277 579 GSHDELIQAESGLYTSLVRLQTTTP 603 (1133)
Q Consensus 579 g~~~~l~~~~~~~~~~~~~~~~~~~ 603 (1133)
|+|+||++++++.|+++++.|....
T Consensus 684 G~h~eLl~~~~gly~~Lv~~q~~~~ 708 (716)
T KOG0058|consen 684 GTHDELLSKPNGLYAKLVQRQLDSG 708 (716)
T ss_pred ccHHHHhhCcccHHHHHHHHhcccC
Confidence 9999999977799999999886543
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-106 Score=975.95 Aligned_cols=578 Identities=44% Similarity=0.697 Sum_probs=547.0
Q ss_pred ccchHHHHHhhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHH
Q 041277 17 KNGSFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVA 96 (1133)
Q Consensus 17 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (1133)
.+.++++++++.+| +|.++++|++++++.|..+|++.+++++++..+... +..........|+++++++++..+++
T Consensus 648 ~~~s~~~i~k~~~p-e~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~---~~~~~~~~~~~~al~f~~l~~~~~i~ 723 (1228)
T KOG0055|consen 648 EKVSFWRIFKLNKP-EWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPP---DDDELKREVRAWALIFLGLGIVSGIT 723 (1228)
T ss_pred ccccHHHHHHhccc-hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCC---ChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999876 688889999999999999999999999999988644 22222233334888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 041277 97 CFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLV 176 (1133)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 176 (1133)
.+++.+++...|+++..|+|..+|+++++++++|||.+.|+ |.|.+|+.+|...++..+++.+..+++++..+++++++
T Consensus 724 ~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iii 802 (1228)
T KOG0055|consen 724 NFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIII 802 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999985535 99999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHH
Q 041277 177 AFLMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQ 256 (1133)
Q Consensus 177 ~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~ 256 (1133)
.|+++|+|+++++++.|++++..+...+.+.....+..+..++..+.+.|+++|||||++|+.|+++.+.|.+..++..+
T Consensus 803 af~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~ 882 (1228)
T KOG0055|consen 803 AFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRK 882 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 257 LGLKQGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIM 335 (1133)
Q Consensus 257 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~ 335 (1133)
...|.+.+.++.++ .+.+.++.+++.+|||++++.+|.+++.+++.+++.+.+....+++.....+++.+|+.|+.+|+
T Consensus 883 ~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF 962 (1228)
T KOG0055|consen 883 SSFKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIF 962 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHH
Confidence 99999999999999 99999999999999999999999999999999999998888999999999999999999999999
Q ss_pred HHhccCCCCCCCCCcccccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCC
Q 041277 336 EMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP 415 (1133)
Q Consensus 336 ~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~ 415 (1133)
++++++|+++++++.+...+..+|+|+|+||+|+||.+|+.+||+|+||+|++||++||||||||||||++.+|.|+|+|
T Consensus 963 ~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp 1042 (1228)
T KOG0055|consen 963 EILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDP 1042 (1228)
T ss_pred HHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 99999998776543444456678999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccC
Q 041277 416 LGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGE 495 (1133)
Q Consensus 416 ~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~ 495 (1133)
++|.|.|||+|++++++++||++||.|.|||.||++||||||+||.++.+++|+.+||+.+++|+||.+||+||||.|||
T Consensus 1043 ~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGe 1122 (1228)
T KOG0055|consen 1043 DAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGE 1122 (1228)
T ss_pred CCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCc
Confidence 99999999999999999999999999999999999999999999966689999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeE
Q 041277 496 RGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQV 575 (1133)
Q Consensus 496 ~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i 575 (1133)
+|.+||||||||||||||+++||+||||||+|||||.++|+.+|++|++.+.|+|+|+|+|||+++++||.|+|++||+|
T Consensus 1123 rG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~V 1202 (1228)
T KOG0055|consen 1123 RGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKV 1202 (1228)
T ss_pred ccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCcchhccccchhhHHHHHhhc
Q 041277 576 METGSHDELIQAESGLYTSLVRLQT 600 (1133)
Q Consensus 576 ~~~g~~~~l~~~~~~~~~~~~~~~~ 600 (1133)
+|+|+|++|++ ++|.|.++++.|.
T Consensus 1203 vE~GtH~~L~~-~~G~Y~~Lv~~q~ 1226 (1228)
T KOG0055|consen 1203 VEQGTHDELLA-KRGIYFRLVQLQS 1226 (1228)
T ss_pred EecccHHHHHh-CCCchHHHhhhcc
Confidence 99999999999 7999999998774
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-93 Score=858.82 Aligned_cols=568 Identities=32% Similarity=0.479 Sum_probs=513.8
Q ss_pred ccchHHHHHhhhchhhHHH--HHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHH
Q 041277 17 KNGSFRSIFMHADGVDMFL--MVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSW 94 (1133)
Q Consensus 17 ~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (1133)
++..+.+++....++++.+ +++..++..+.+++.| ++...++|.+.... ..+.+....+.+++.++...
T Consensus 138 ~~~~~~~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p---~~~q~viD~Vl~~~------~~~tL~vl~ig~~~~~l~~~ 208 (709)
T COG2274 138 PPFGLSWFIPLLFKYRRLLFEVLLASLLLQLLALATP---LFSQIVIDKVLPDA------SRSTLTVLAIGLLLAALFEA 208 (709)
T ss_pred cccchHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhccC------chhHHHHHHHHHHHHHHHHH
Confidence 3344555555554443332 3333444444455555 67788999876542 12344445555666778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 041277 95 VACFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCY 174 (1133)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~ 174 (1133)
++.+++.+...+.+.|+..++-.++|+|++++|++||.+ + ++|++++|+. |.++|+++++..+...+.++.+.++.+
T Consensus 209 ~l~~lr~~~~~~~~~rld~~l~~~~~~hll~Lpl~~f~~-r-~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l 285 (709)
T COG2274 209 LLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEK-R-SVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFL 285 (709)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHccC-C-ChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999996 6 9999999985 999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHH
Q 041277 175 LVAFLMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGS 254 (1133)
Q Consensus 175 ~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 254 (1133)
++|++++|+|++++++.+|+++++..++.+.+++..++..+..++.++.+.|+++|+++||+.+.|..+..+|++...+.
T Consensus 286 ~vm~~ys~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~ 365 (709)
T COG2274 286 AVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQ 365 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 255 VQLGLKQGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGER 333 (1133)
Q Consensus 255 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~r 333 (1133)
.+...+.......... ..++..++.++++|+|+++|++|++|+|.+++|.+....+..|+..+...+..+++++.+.+|
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~r 445 (709)
T COG2274 366 VNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALER 445 (709)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888888777 778888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCCCCCCCcccccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhcc
Q 041277 334 IMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 334 i~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
+.++++.++|.+.+.. ....+...|+|+|+||+|+|+.++ +++|+|+||+|++||++||||+||||||||+|+|+|+|
T Consensus 446 L~dil~~~~E~~~~~~-~~~~~~~~g~I~~~nvsf~y~~~~-~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 446 LGDILDTPPEQEGDKT-LIHLPKLQGEIEFENVSFRYGPDD-PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred HHHHhcCCcccccccc-cccccccCceEEEEEEEEEeCCCC-cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 9999999877543221 123456679999999999998653 47999999999999999999999999999999999999
Q ss_pred CCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccc
Q 041277 414 APLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQV 493 (1133)
Q Consensus 414 ~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~ 493 (1133)
+|++|+|++||.|+.+++..++|++||||+||+.||+|||+|||+++.|+.++|++++||+.+++|+||.++|.||+|.+
T Consensus 524 ~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v 603 (709)
T COG2274 524 KPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPV 603 (709)
T ss_pred CCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCC
Q 041277 494 GERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDG 573 (1133)
Q Consensus 494 ~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G 573 (1133)
||+|.+||||||||++||||++++|+||||||||||||+++|+.|.+.|.+..+|+|+|+||||++++++||||+||++|
T Consensus 604 ~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~G 683 (709)
T COG2274 604 GEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQG 683 (709)
T ss_pred ccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeecCcchhccccchhhHHHHHhh
Q 041277 574 QVMETGSHDELIQAESGLYTSLVRLQ 599 (1133)
Q Consensus 574 ~i~~~g~~~~l~~~~~~~~~~~~~~~ 599 (1133)
+|+++|+|+|+++ .+|.|+++++.|
T Consensus 684 kiv~~gs~~ell~-~~g~y~~l~~~q 708 (709)
T COG2274 684 KIVEQGSHEELLA-QGGLYARLYQQQ 708 (709)
T ss_pred ceeccCCHHHHHH-hcChHHHHHhcc
Confidence 9999999999999 599999998765
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-87 Score=829.32 Aligned_cols=569 Identities=21% Similarity=0.256 Sum_probs=484.7
Q ss_pred chHHHHHhhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 041277 19 GSFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACF 98 (1133)
Q Consensus 19 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (1133)
..+++++++.+++++ .++++++++++.+++.+..|+++++++|.+.... . + ......+...++++.++..++.+
T Consensus 8 ~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~--~--~-~~~~~~~~~~~~~~~~~~~~~~~ 81 (588)
T PRK11174 8 ELTRWLKQQSKPAKR-WLNLSILLGFLSGLLLIAQAWLLATILQALIIEN--I--P-REALLPPFILLILLFVLRALLAW 81 (588)
T ss_pred hhhHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--C--c-hhHHHHHHHHHHHHHHHHHHHHH
Confidence 346778888876644 4556777777777777888899999999754210 0 0 01122233334445566778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 041277 99 LEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAF 178 (1133)
Q Consensus 99 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (1133)
++.++..+.+.++..++|.++|+|++++|.++|++ . ++|++++|+++|++.+++.+.+.+..++.+++.+++.+++++
T Consensus 82 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~-~-~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~ 159 (588)
T PRK11174 82 LRERVGFKAGQHIRQQIRQQVLDKLQQLGPAWIQG-K-PAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVF 159 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhcc-C-CHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999996 6 899999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHH
Q 041277 179 LMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLG 258 (1133)
Q Consensus 179 ~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~ 258 (1133)
+++|++++++++++|+.+++..++.++.++..++.++..++.++.+.|.++|+++||+|++|+.+.++|.+..++.++..
T Consensus 160 ~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~ 239 (588)
T PRK11174 160 PINWAAGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRT 239 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998899999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 259 LKQGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGTV---------FAVGASIAVGGLALGAGLPNLKYFSEAM 328 (1133)
Q Consensus 259 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (1133)
.+..+..+...+ ..++..+..+++++++++.+ .|.+|+|.+ +++..+......|+..+...+..++++.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~ 318 (588)
T PRK11174 240 MEVLRMAFLSSAVLEFFASISIALVAVYFGFSY-LGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAV 318 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 877776665555 44444444444445555544 377887754 1112333445678888888899999999
Q ss_pred HHHHHHHHHhccCCCCCCCCCcccccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHH
Q 041277 329 AAGERIMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIAL 408 (1133)
Q Consensus 329 ~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~ 408 (1133)
++++|+.++++.+++.+... ....+....+.|+|+||+|.|+++ +++|+|+||+|++||++|||||||||||||+++
T Consensus 319 ~~~~ri~~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~vsf~~~~~--~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~l 395 (588)
T PRK11174 319 GAAESLVTFLETPLAHPQQG-EKELASNDPVTIEAEDLEILSPDG--KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNA 395 (588)
T ss_pred HHHHHHHHHHcCCCcccCCC-ccccCCCCCceEEEEeeEEeccCC--CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHH
Confidence 99999999998764322111 101111123579999999877542 469999999999999999999999999999999
Q ss_pred HHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCc
Q 041277 409 LQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQ 488 (1133)
Q Consensus 409 l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g 488 (1133)
|+|+| |++|+|.+||+|+++++.+++|++|+||||||+||++||+|||++|+|+.++++++++|+.+++++|++++|+|
T Consensus 396 L~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G 474 (588)
T PRK11174 396 LLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQG 474 (588)
T ss_pred HhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccc
Confidence 99999 99999999999999999999999999999999999999999999999899999999999999999999999999
Q ss_pred ccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEE
Q 041277 489 YDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIA 568 (1133)
Q Consensus 489 ~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~ 568 (1133)
|||.+||+|.+|||||||||+||||+++||+|||||||||+||+++++.+++.|++..+++|+|+||||+++++.||+|+
T Consensus 475 ~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Ii 554 (588)
T PRK11174 475 LDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIW 554 (588)
T ss_pred cccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999888999999999999999999999
Q ss_pred EEeCCeEEeecCcchhccccchhhHHHHHhhcC
Q 041277 569 VVQDGQVMETGSHDELIQAESGLYTSLVRLQTT 601 (1133)
Q Consensus 569 ~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~ 601 (1133)
+|++|+++|+|+|+||++ +++.|++++..|..
T Consensus 555 vl~~G~i~e~G~~~eL~~-~~~~y~~l~~~q~~ 586 (588)
T PRK11174 555 VMQDGQIVQQGDYAELSQ-AGGLFATLLAHRQE 586 (588)
T ss_pred EEeCCeEeecCCHHHHHh-cchHHHHHHHHhhc
Confidence 999999999999999998 68899999987753
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-87 Score=879.45 Aligned_cols=571 Identities=30% Similarity=0.436 Sum_probs=490.3
Q ss_pred hHHHHHhhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 041277 20 SFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACFL 99 (1133)
Q Consensus 20 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (1133)
.+.+++++..++.+ .++++++++++.+.+.|+++++++.+++.+... .........+++++++++++.+++.++
T Consensus 812 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~~~~~~~l~~~~~~i~~~~~~~l 885 (1466)
T PTZ00265 812 NLRIVYREIFSYKK-DVTIIALSILVAGGLYPVFALLYAKYVSTLFDF-----ANLEANSNKYSLYILVIAIAMFISETL 885 (1466)
T ss_pred hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666654433 356778888889999999999999999976432 011122345566677778888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 041277 100 EGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFL 179 (1133)
Q Consensus 100 ~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (1133)
+.++..++++++..++|.++|++++++|++|||++.+++|++++|+++|++.+++.+...+..++..++.++++++++++
T Consensus 886 ~~~~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~ 965 (1466)
T PTZ00265 886 KNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFY 965 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999841238999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----------------HHHHHHHHHHHHHHHHhhHHHHHHHcchH
Q 041277 180 MLWRLAIVGFPFVVLLVIPGLMYGRTLMSLA-RK-----------------MRDEYNKAGTIAEQAISSIRTVYAFVGES 241 (1133)
Q Consensus 180 ~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~-~~-----------------~~~~~~~~~~~~~E~l~gi~~ik~~~~e~ 241 (1133)
++|.++++++++++++ ...+.++.+... ++ .++..++.+..++|+++|+++||+|+.|+
T Consensus 966 ~~~~l~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~ 1042 (1466)
T PTZ00265 966 FCPIVAAVLTGTYFIF---MRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLED 1042 (1466)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchH
Confidence 9999988766444333 333444332211 11 22346677899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 242 KTINEFSSALQGSVQLGLKQGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPN 320 (1133)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~ 320 (1133)
.+.++|.+..+...+...+.....++..+ ..++.+++.++++|+|++++..|.+|+|+++++++++.....++..+...
T Consensus 1043 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~ 1122 (1466)
T PTZ00265 1043 YFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSL 1122 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888888888888887 77777888889999999999999999999998887766655667788888
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCCCcccc---cccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcC
Q 041277 321 LKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEI---LENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGG 397 (1133)
Q Consensus 321 ~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~---~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~ 397 (1133)
+..++++++|++|++++++.+++.+..+..+.. ++...+.|+|+||+|+||++++.++|+|+||+|++|+++|||||
T Consensus 1123 ~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~ 1202 (1466)
T PTZ00265 1123 KGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGE 1202 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECC
Confidence 999999999999999999876643221111111 12345789999999999876556799999999999999999999
Q ss_pred CCCcHHHHHHHHHhccCC------------------------------------------------------CccEEEEC
Q 041277 398 SGSGKSTVIALLQRFYAP------------------------------------------------------LGGEIILD 423 (1133)
Q Consensus 398 sGsGKSTll~~l~~~~~~------------------------------------------------------~~G~i~~~ 423 (1133)
||||||||+++|+|+|+| ++|+|++|
T Consensus 1203 SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~id 1282 (1466)
T PTZ00265 1203 TGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLD 1282 (1466)
T ss_pred CCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEEC
Confidence 999999999999999999 69999999
Q ss_pred CeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChH
Q 041277 424 GVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGG 503 (1133)
Q Consensus 424 g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG 503 (1133)
|+|+++++.+++|++||||+|||.||++||+|||.||.++++++++++||+.+++++||.+||+||||.|||+|.+||||
T Consensus 1283 G~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGG 1362 (1466)
T PTZ00265 1283 GVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGG 1362 (1466)
T ss_pred CEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhcCCEEEEEeC----CeEE-
Q 041277 504 QKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRNADVIAVVQD----GQVM- 576 (1133)
Q Consensus 504 qkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~----G~i~- 576 (1133)
|||||||||||+++|+||||||||||||+++|+.|+++|.+.. +++|+|+||||+++++.||+|+||++ |+++
T Consensus 1363 QkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~ 1442 (1466)
T PTZ00265 1363 QKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQ 1442 (1466)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEE
Confidence 9999999999999999999999999999999999999999884 69999999999999999999999999 9955
Q ss_pred eecCcchhccccchhhHHHHHhh
Q 041277 577 ETGSHDELIQAESGLYTSLVRLQ 599 (1133)
Q Consensus 577 ~~g~~~~l~~~~~~~~~~~~~~~ 599 (1133)
|+|+|+||++.+++.|+++++.|
T Consensus 1443 e~Gth~eLl~~~~g~Y~~l~~~~ 1465 (1466)
T PTZ00265 1443 AHGTHEELLSVQDGVYKKYVKLA 1465 (1466)
T ss_pred EecCHHHHHhcCCChHHHHHhhc
Confidence 89999999974489999998765
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-86 Score=808.79 Aligned_cols=561 Identities=34% Similarity=0.533 Sum_probs=499.4
Q ss_pred HHHHHhhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 041277 21 FRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACFLE 100 (1133)
Q Consensus 21 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (1133)
+++++++.+ .+ .+.++.++.++........+++++.++|.+... . ........+++++.++..++.++.
T Consensus 4 ~~~l~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~----~~~~~~~~~~~~~~~~~~v~~~~~ 72 (567)
T COG1132 4 LRRLLKYLK--YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALLAD----L----GELLELLLLLLLLALLGGVLRALQ 72 (567)
T ss_pred HHHHHHHHH--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----H----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555544 34 455566666666666667778888899876511 1 122233344445555677788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 041277 101 GYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLM 180 (1133)
Q Consensus 101 ~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (1133)
.++..+.+.+...++|.+++++++++|+++|++ + ++|++++|+++|++.++..+.+....+...+..+++.+++++..
T Consensus 73 ~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~-~-~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (567)
T COG1132 73 SYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDK-A-KSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSL 150 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhCc-C-CcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 888888889999999999999999999999996 6 89999999999999999999988666666788888999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHH
Q 041277 181 LWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGLK 260 (1133)
Q Consensus 181 ~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 260 (1133)
+|.+++++++..|++.++..++.++.++..++.++..++.++.+.|.++|+++||+|+.|+.+.+++++..++..+...+
T Consensus 151 ~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~ 230 (567)
T COG1132 151 SWRLALILLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLR 230 (567)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888999999999999999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041277 261 QGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEMIK 339 (1133)
Q Consensus 261 ~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~ 339 (1133)
.....+...+ ...+..+...+++++|++.+..+.+++|.+.+++.+......|+..+...+..++++..|++|++++++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~ 310 (567)
T COG1132 231 ASRLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLD 310 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 8888887777 777888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCcccccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccE
Q 041277 340 RVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGE 419 (1133)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~ 419 (1133)
.+++...... ......++|+|+||+|+|++ ++++|+|+||++++||++||||||||||||++++|+|+|+|++|+
T Consensus 311 ~~~~~~~~~~---~~~~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~ 385 (567)
T COG1132 311 EEPEVEDPPD---PLKDTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGE 385 (567)
T ss_pred CCccccCCCC---CCCCCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCe
Confidence 8665332111 12234577999999999984 346999999999999999999999999999999999999999999
Q ss_pred EEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCC
Q 041277 420 IILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQ 499 (1133)
Q Consensus 420 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~ 499 (1133)
|++||+|+++++..++|++|++|||||+||++||+|||.+|+++++++++++||+.++++||++++|+||||.+||+|.+
T Consensus 386 I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~ 465 (567)
T COG1132 386 ILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVN 465 (567)
T ss_pred EEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeec
Q 041277 500 MSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETG 579 (1133)
Q Consensus 500 LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g 579 (1133)
|||||||||+||||+++||||||||||||+||+++|+.+++.+.++.++||+|+||||++++++||+|+||++|+|+|+|
T Consensus 466 LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G 545 (567)
T COG1132 466 LSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERG 545 (567)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEec
Confidence 99999999999999999999999999999999999999999999888899999999999999999999999999999999
Q ss_pred CcchhccccchhhHHHHHhhc
Q 041277 580 SHDELIQAESGLYTSLVRLQT 600 (1133)
Q Consensus 580 ~~~~l~~~~~~~~~~~~~~~~ 600 (1133)
+|+||++ .++.|+++++.|.
T Consensus 546 ~h~eLl~-~~g~y~~l~~~~~ 565 (567)
T COG1132 546 THEELLA-KGGLYARLYQAQG 565 (567)
T ss_pred CHHHHHH-cCCHHHHHHHHhh
Confidence 9999999 5999999998775
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-86 Score=825.11 Aligned_cols=564 Identities=34% Similarity=0.539 Sum_probs=496.2
Q ss_pred cchHHHHHhhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHH
Q 041277 18 NGSFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVAC 97 (1133)
Q Consensus 18 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (1133)
...+++++++.++. +..+++++++.++..+...+.|+++++++|.+.... +. .........++++.++..++.
T Consensus 146 ~~~~~~l~~~~~~~-~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~ 218 (711)
T TIGR00958 146 ADLLFRLLGLSGRD-WPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDK--GP----PALASAIFFMCLLSIASSVSA 218 (711)
T ss_pred hhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CH----HHHHHHHHHHHHHHHHHHHHH
Confidence 34577788887654 444555666666667777777889999999865321 11 112222233344555667788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 041277 98 FLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVA 177 (1133)
Q Consensus 98 ~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (1133)
+++.++..+.+.++..++|.++|++++++|.++|++ . ++|++++|+++|++.+++.+.+.+..++.+++.+++.++++
T Consensus 219 ~l~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~-~-~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l 296 (711)
T TIGR00958 219 GLRGGSFNYTMARINLRIREDLFRSLLRQDLGFFDE-N-KTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFM 296 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcC-C-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888889999999999999999999999999999995 6 99999999999999999999999999999999999999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHH
Q 041277 178 FLMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQL 257 (1133)
Q Consensus 178 ~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~ 257 (1133)
++++|+++++.++.+|+.+++..++.++.++..++.++..++.++.+.|.++|+++||+|++|+.+.++|.+..++..+.
T Consensus 297 ~~~s~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~ 376 (711)
T TIGR00958 297 LWLSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQL 376 (711)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 258 GLKQGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIME 336 (1133)
Q Consensus 258 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~ 336 (1133)
..+.....+.... ...+..+..++++++|++++.+|.+|+|.++++..+......|+..+...+..++++..+.+|+.+
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~ 456 (711)
T TIGR00958 377 NKRKALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFE 456 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8777766665555 455556666778889999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCCCCCCcccccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCC
Q 041277 337 MIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPL 416 (1133)
Q Consensus 337 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~ 416 (1133)
+++.+++.+... ...+.+..+.|+|+||+|+|++++++++|+|+||+|+|||++|||||||||||||+++|+|+|+|+
T Consensus 457 ~l~~~~~~~~~~--~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~ 534 (711)
T TIGR00958 457 YLDRKPNIPLTG--TLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPT 534 (711)
T ss_pred HhCCCCCCCCCC--CCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCC
Confidence 998765533211 112223456799999999998655567999999999999999999999999999999999999999
Q ss_pred ccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCC
Q 041277 417 GGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGER 496 (1133)
Q Consensus 417 ~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~ 496 (1133)
+|+|.+||+|+++++.+++|++|+||||||++|++||+|||.+|.++.+++++.++++.++++++++++|+|+||.+||+
T Consensus 535 ~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~ 614 (711)
T TIGR00958 535 GGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEK 614 (711)
T ss_pred CCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCC
Confidence 99999999999999999999999999999999999999999999888899999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEE
Q 041277 497 GVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVM 576 (1133)
Q Consensus 497 g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~ 576 (1133)
|.+|||||||||+||||++++|+|+|||||||+||+++++.+++ ....+++|+|+||||+++++.||+|++|++|+|+
T Consensus 615 G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~iv 692 (711)
T TIGR00958 615 GSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVV 692 (711)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998 3334789999999999999999999999999999
Q ss_pred eecCcchhccccchhhHHH
Q 041277 577 ETGSHDELIQAESGLYTSL 595 (1133)
Q Consensus 577 ~~g~~~~l~~~~~~~~~~~ 595 (1133)
|+|+|+||++ +++.|+++
T Consensus 693 e~Gt~~eL~~-~~~~y~~l 710 (711)
T TIGR00958 693 EMGTHKQLME-DQGCYKHL 710 (711)
T ss_pred EeeCHHHHHh-CCCchHhc
Confidence 9999999998 57888875
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-84 Score=812.48 Aligned_cols=563 Identities=27% Similarity=0.353 Sum_probs=493.2
Q ss_pred chHHHHHhh-hchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHH
Q 041277 19 GSFRSIFMH-ADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVAC 97 (1133)
Q Consensus 19 ~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (1133)
..+++++++ .++. +..++..++++++..+.....|++++.++|.+.... + ...+....+.++++.++..++.
T Consensus 121 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~--~----~~~l~~~~~~~~~~~~~~~~~~ 193 (686)
T TIGR03797 121 LGLRDLLRFALRGA-RRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDA--D----RSLLVQIALALLAAAVGAAAFQ 193 (686)
T ss_pred ccHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC--C----hhHHHHHHHHHHHHHHHHHHHH
Confidence 446666666 3333 333344455555555555566678899999765321 1 1222233334445556677888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 041277 98 FLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVA 177 (1133)
Q Consensus 98 ~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (1133)
+++.++..+.+.++..++|..+|+|++++|++||++ . ++|++++|++ |++.+++.+...+...+.++...+++++++
T Consensus 194 ~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~-~-~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l 270 (686)
T TIGR03797 194 LAQSLAVLRLETRMDASLQAAVWDRLLRLPVSFFRQ-Y-STGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLM 270 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCC-C-ChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999996 6 9999999997 899999999888888887887788888999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHH
Q 041277 178 FLMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQL 257 (1133)
Q Consensus 178 ~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~ 257 (1133)
++++|++++++++++|+++++..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|++..++..+.
T Consensus 271 ~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~ 350 (686)
T TIGR03797 271 FYYSWKLALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKL 350 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 258 GLKQGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIME 336 (1133)
Q Consensus 258 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~ 336 (1133)
..+.....+.... ..++..+..++++|+|++++.+|.+|+|.++++..+...+..|+..+...+..+++++.+.+|+.+
T Consensus 351 ~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ 430 (686)
T TIGR03797 351 ELSAQRIENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKP 430 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888777666 566667777888999999999999999999999999889899999999999999999999999999
Q ss_pred HhccCCCCCCCCCcccccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCC
Q 041277 337 MIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPL 416 (1133)
Q Consensus 337 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~ 416 (1133)
+++.+++.+.. ...+....+.|+|+||+|+|++. ++++|+|+||+|++||++|||||||||||||+++|+|+|+|+
T Consensus 431 ~l~~~~e~~~~---~~~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~ 506 (686)
T TIGR03797 431 ILEALPEVDEA---KTDPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE 506 (686)
T ss_pred HhcCCcccccC---cCCCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 99876543211 11122235689999999999743 356999999999999999999999999999999999999999
Q ss_pred ccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCC
Q 041277 417 GGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGER 496 (1133)
Q Consensus 417 ~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~ 496 (1133)
+|+|++||+|+++++.+++|++||||||||++|++||+|||.+++| .++++++++++.++++++++++|+|+||.+||+
T Consensus 507 ~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~ 585 (686)
T TIGR03797 507 SGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEG 585 (686)
T ss_pred CCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCC
Confidence 9999999999999999999999999999999999999999999988 899999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEE
Q 041277 497 GVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVM 576 (1133)
Q Consensus 497 g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~ 576 (1133)
|.+|||||||||+||||++++|+|||||||||+||+++|+.+.+.|++. ++|+|+||||+++++.||+|++|++|+|+
T Consensus 586 G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv 663 (686)
T TIGR03797 586 GGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVV 663 (686)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999999876 68999999999999999999999999999
Q ss_pred eecCcchhccccchhhHHHHHhh
Q 041277 577 ETGSHDELIQAESGLYTSLVRLQ 599 (1133)
Q Consensus 577 ~~g~~~~l~~~~~~~~~~~~~~~ 599 (1133)
++|+|+||++ +++.|+++++.|
T Consensus 664 ~~G~~~~Ll~-~~~~y~~l~~~q 685 (686)
T TIGR03797 664 QQGTYDELMA-REGLFAQLARRQ 685 (686)
T ss_pred EECCHHHHHh-CCcHHHHHHHhc
Confidence 9999999998 689999998754
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-84 Score=812.22 Aligned_cols=564 Identities=24% Similarity=0.347 Sum_probs=492.5
Q ss_pred chHHHHHhhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 041277 19 GSFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACF 98 (1133)
Q Consensus 19 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (1133)
..+++++++.++.++. ++..++++++..+.....|++++.++|.+.... . ...+......++++.++..++.+
T Consensus 142 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~--~----~~~l~~~~~~~~~~~~~~~~~~~ 214 (708)
T TIGR01193 142 NSLLKFIPLITRQKKL-IVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHK--M----MGTLGIISIGLIIAYIIQQILSY 214 (708)
T ss_pred chHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC--C----hHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777776654443 334444555555555566688899999765331 1 11222223333444556678888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 041277 99 LEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAF 178 (1133)
Q Consensus 99 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (1133)
++.++..+.+.++..++|.++|+|++++|+++|++ . ++|++++|++ |++.+++++...+...+.++..+++.+++++
T Consensus 215 ~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~f~~-~-~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~ 291 (708)
T TIGR01193 215 IQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFST-R-RTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLV 291 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-C-chhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999996 6 9999999998 9999999998888888888888888888899
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHH
Q 041277 179 LMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLG 258 (1133)
Q Consensus 179 ~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~ 258 (1133)
+++|+++++.++.+|+++++..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|++..++..+..
T Consensus 292 ~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~ 371 (708)
T TIGR01193 292 RQNMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKS 371 (708)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 259 LKQGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEM 337 (1133)
Q Consensus 259 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~ 337 (1133)
.+.....+.... ..++..+..++++|+|++++.+|.+|+|.++++..+...+..|+..+...+..+++++.+.+|+.++
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~ 451 (708)
T TIGR01193 372 FKYQKADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEV 451 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888777766665 5556666677888999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCCCcccccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCc
Q 041277 338 IKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLG 417 (1133)
Q Consensus 338 l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~ 417 (1133)
++.+++.+... .........+.|+++||+|+|+++ +++|+|+||+|++||++||+||||||||||+++|+|+|+|++
T Consensus 452 l~~~~e~~~~~-~~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~ 528 (708)
T TIGR01193 452 YLVDSEFINKK-KRTELNNLNGDIVINDVSYSYGYG--SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARS 528 (708)
T ss_pred HcCCCcccccc-cccCCCCCCCcEEEEEEEEEcCCC--CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCC
Confidence 98765532211 101122345689999999999743 469999999999999999999999999999999999999999
Q ss_pred cEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcC-CCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCC
Q 041277 418 GEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFG-KEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGER 496 (1133)
Q Consensus 418 G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~ 496 (1133)
|+|++||+|+++++.+++|++||||||||++|++||+|||.++ .++.++++++++|+.++++++++++|+||||.+||+
T Consensus 529 G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~ 608 (708)
T TIGR01193 529 GEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEE 608 (708)
T ss_pred cEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCC
Confidence 9999999999999999999999999999999999999999998 477899999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEE
Q 041277 497 GVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVM 576 (1133)
Q Consensus 497 g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~ 576 (1133)
|.+|||||||||+||||++++|+|||||||||+||+++++.+++.|++. +++|+|+||||+++++.||+|++|++|+++
T Consensus 609 G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~ 687 (708)
T TIGR01193 609 GSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKII 687 (708)
T ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999999875 689999999999999999999999999999
Q ss_pred eecCcchhccccchhhHHHHH
Q 041277 577 ETGSHDELIQAESGLYTSLVR 597 (1133)
Q Consensus 577 ~~g~~~~l~~~~~~~~~~~~~ 597 (1133)
+.|+|+||++ .++.|+++++
T Consensus 688 ~~G~~~~L~~-~~~~y~~l~~ 707 (708)
T TIGR01193 688 EQGSHDELLD-RNGFYASLIH 707 (708)
T ss_pred EECCHHHHHh-cCCcHHHHhh
Confidence 9999999998 5789998874
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-84 Score=811.17 Aligned_cols=564 Identities=26% Similarity=0.368 Sum_probs=490.5
Q ss_pred chHHHHHhhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 041277 19 GSFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACF 98 (1133)
Q Consensus 19 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (1133)
..++.++++.+++++ .+...++++++..+.....|++++.++|.+.... . ...+......++++.++..++.+
T Consensus 140 ~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~--~----~~~l~~~~~~~~~~~~~~~~~~~ 212 (710)
T TIGR03796 140 SLLRALWRRLRGSRG-ALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQG--R----QDWLRPLLLGMGLTALLQGVLTW 212 (710)
T ss_pred ccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--C----hhHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666554433 2233344444444444455678889999765331 1 11122223334445566778889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 041277 99 LEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAF 178 (1133)
Q Consensus 99 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (1133)
++.++..+.+.++..++|.++|+|++++|+++|++ . ++|++++|+++| +.+++++...+...+.++..+++.+++++
T Consensus 213 ~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~-~-~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~ 289 (710)
T TIGR03796 213 LQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFAQ-R-HAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLML 289 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcC-C-cccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999996 6 999999999988 78999999888889999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHH
Q 041277 179 LMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLG 258 (1133)
Q Consensus 179 ~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~ 258 (1133)
+++|+++++.++.+|+.+++..++.++.++..++.++..++..+.+.|.++|+++||++++|+.+.++|.+...+..+..
T Consensus 290 ~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~ 369 (710)
T TIGR03796 290 LYDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQ 369 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 259 LKQGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEM 337 (1133)
Q Consensus 259 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~ 337 (1133)
.+.....+.... ..++..+..++++++|++++.+|.+|+|.++++..+...+..|+..+...+..++++..+.+|+.++
T Consensus 370 ~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~i 449 (710)
T TIGR03796 370 QELGVLTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDV 449 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888777776666 6666777778889999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCCC---c-cccc-ccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhc
Q 041277 338 IKRVPKIDSDSM---E-GEIL-ENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRF 412 (1133)
Q Consensus 338 l~~~~~~~~~~~---~-~~~~-~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~ 412 (1133)
++.+++.+.... . ...+ ....+.|+++||+|+|++. ++++|+|+||+|++||++|||||||||||||+++|+|+
T Consensus 450 l~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl 528 (710)
T TIGR03796 450 LRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGL 528 (710)
T ss_pred HcCCCccccccccccccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 987654321110 0 0111 2235689999999999854 35699999999999999999999999999999999999
Q ss_pred cCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCccccc
Q 041277 413 YAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQ 492 (1133)
Q Consensus 413 ~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~ 492 (1133)
|+|++|+|.+||+|+++++.+++|++||||||+|++|++||+|||.++.++.++++++++|+.+++++++.++|+|+||.
T Consensus 529 ~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~ 608 (710)
T TIGR03796 529 YQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAE 608 (710)
T ss_pred CCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccce
Confidence 99999999999999999999999999999999999999999999999988899999999999999999999999999999
Q ss_pred ccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeC
Q 041277 493 VGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQD 572 (1133)
Q Consensus 493 ~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~ 572 (1133)
+||+|.+|||||||||+||||++++|+|||||||||+||+++|+.+.+.+++ .++|+|+||||+++++.||+|++|++
T Consensus 609 i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~ 686 (710)
T TIGR03796 609 LAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLER 686 (710)
T ss_pred eccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeC
Confidence 9999999999999999999999999999999999999999999999999986 58999999999999999999999999
Q ss_pred CeEEeecCcchhccccchhhHHHH
Q 041277 573 GQVMETGSHDELIQAESGLYTSLV 596 (1133)
Q Consensus 573 G~i~~~g~~~~l~~~~~~~~~~~~ 596 (1133)
|+++++|+|+||++ +++.|++++
T Consensus 687 G~i~~~G~~~~Ll~-~~~~y~~l~ 709 (710)
T TIGR03796 687 GKVVQRGTHEELWA-VGGAYARLI 709 (710)
T ss_pred CEEEEecCHHHHHH-cCCcHHHHh
Confidence 99999999999998 688899876
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-83 Score=786.00 Aligned_cols=566 Identities=22% Similarity=0.299 Sum_probs=484.9
Q ss_pred HHHHHhhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 041277 21 FRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACFLE 100 (1133)
Q Consensus 21 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (1133)
+++++++.+++++ .++++++++++..++....|+++++++|...... ...............+++++++..++.++.
T Consensus 4 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (574)
T PRK11160 4 LLPFLKLYKRHWF-MLSLGILLAIVTLLASIGLLTLSGWFLSASAVAG--LAGLYSFNYMLPAAGVRGAAIGRTAGRYGE 80 (574)
T ss_pred hHHHHHHHhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccchhhHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4456666655433 3445666666666666666788999999643110 000000001111222334556777888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 041277 101 GYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLM 180 (1133)
Q Consensus 101 ~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (1133)
.++.++.+.++..++|.++|+|++++|.++|++ . ++|++++|+++|++.+++++.+.++.++.+++.+++++++++++
T Consensus 81 ~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~-~-~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 158 (574)
T PRK11160 81 RLVSHDATFRVLTHLRVFTFSKLLPLSPAGLAR-Y-RQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFF 158 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccChHhhcc-C-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999996 6 99999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHH
Q 041277 181 LWRLAIVGFPFVVLLVI-PGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGL 259 (1133)
Q Consensus 181 ~~~l~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 259 (1133)
+|++++++++++|++++ +..++.++.++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|++..++..+...
T Consensus 159 ~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 238 (574)
T PRK11160 159 DLTLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQR 238 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHH
Confidence 99999998888887655 45677788888888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 260 KQGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAV-GGLALGAGLPNLKYFSEAMAAGERIMEM 337 (1133)
Q Consensus 260 ~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~ri~~~ 337 (1133)
+.....+...+ ..++..+..++++++|+++ .+|.+++|.+++++.+... ...++..+...+..++++.++++|+.++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~l 317 (574)
T PRK11160 239 RQANLTGLSQALMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEI 317 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888887777 6666667777788999988 4889999999887766543 3456677777888999999999999999
Q ss_pred hccCCCCCCCCCcccccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCc
Q 041277 338 IKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLG 417 (1133)
Q Consensus 338 l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~ 417 (1133)
++.+++.+... ........+.|+++||+|+|++. ++++|+|+||++++||++|||||||||||||+++|+|+|+|++
T Consensus 318 l~~~~~~~~~~--~~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~ 394 (574)
T PRK11160 318 TEQKPEVTFPT--TSTAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQ 394 (574)
T ss_pred HhCCCCCCCCc--ccCCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 98766532111 11112234679999999999753 2469999999999999999999999999999999999999999
Q ss_pred cEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCC
Q 041277 418 GEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERG 497 (1133)
Q Consensus 418 G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g 497 (1133)
|+|.+||+|+++++.+++|++|+||||||++|++||+|||.++.++.+++++.++++.+++++++++ |+||||.+||+|
T Consensus 395 G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g 473 (574)
T PRK11160 395 GEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGG 473 (574)
T ss_pred ceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCC
Confidence 9999999999999999999999999999999999999999999988999999999999999999999 999999999999
Q ss_pred CCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEe
Q 041277 498 VQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVME 577 (1133)
Q Consensus 498 ~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~ 577 (1133)
.+||||||||++||||++++|+|||||||||+||+++++.+++.+.+..+++|+|+||||+++++.||+|++|++|++++
T Consensus 474 ~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~ 553 (574)
T PRK11160 474 RQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIE 553 (574)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEE
Confidence 99999999999999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred ecCcchhccccchhhHHHHH
Q 041277 578 TGSHDELIQAESGLYTSLVR 597 (1133)
Q Consensus 578 ~g~~~~l~~~~~~~~~~~~~ 597 (1133)
.|+|+||++ +++.|+++++
T Consensus 554 ~g~~~~l~~-~~g~y~~l~~ 572 (574)
T PRK11160 554 QGTHQELLA-QQGRYYQLKQ 572 (574)
T ss_pred eCCHHHHHh-cCcHHHHHHh
Confidence 999999998 6899999885
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-83 Score=800.13 Aligned_cols=555 Identities=24% Similarity=0.354 Sum_probs=485.6
Q ss_pred chHHHHHhhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 041277 19 GSFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACF 98 (1133)
Q Consensus 19 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (1133)
..+++++++.+++++ .+...++++++..++....|++++.++|.+.... + ...+....+.++++.++..++.+
T Consensus 133 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~--~----~~~l~~~~~~~~~~~~~~~~~~~ 205 (694)
T TIGR03375 133 RPKHWFWSTLKESWP-LYRDVLIASLLINLLALASPLFVMNVYDRVVPNQ--A----FETLWVLAIGVALAIVFDFVLKT 205 (694)
T ss_pred ccchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC--c----HhHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666554433 3334444445555555566678899999765321 1 11222223333444556678888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 041277 99 LEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAF 178 (1133)
Q Consensus 99 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (1133)
++.++..+.+.++..++|.++|+|++++|+++ ++ . ++|++++|+ +|++.+++++...+...+.++..+++.+++++
T Consensus 206 ~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~-~~-~-~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~ 281 (694)
T TIGR03375 206 LRSYFLDVAGKKADLILSAKLFERVLGLRMEA-RP-A-SVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIA 281 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-CC-C-ChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998 53 5 899999999 79999999998888788888888888888999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHH
Q 041277 179 LMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLG 258 (1133)
Q Consensus 179 ~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~ 258 (1133)
+++|+++++.++.+|+++++..++.++.++..++.++..++..+.+.|.++|+++||+|++|+.+.++|++..++..+..
T Consensus 282 ~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~ 361 (694)
T TIGR03375 282 IIGGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSG 361 (694)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 259 LKQGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEM 337 (1133)
Q Consensus 259 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~ 337 (1133)
.+.....+.... ..++..++.++++|+|++++.+|.+|+|.++++..+...+..|+..+...+..+++++.+.+|+.++
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~i 441 (694)
T TIGR03375 362 LKSRFLSNLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDEL 441 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888877776 6666667777889999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCCCcccccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCc
Q 041277 338 IKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLG 417 (1133)
Q Consensus 338 l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~ 417 (1133)
++.+++.+... .........+.|+|+||+|+|++. ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++
T Consensus 442 l~~~~e~~~~~-~~~~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~ 519 (694)
T TIGR03375 442 MQLPVERPEGT-RFLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTE 519 (694)
T ss_pred HcCCCCCCCCC-CCCCCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 98765432111 111112235679999999999753 3469999999999999999999999999999999999999999
Q ss_pred cEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCC
Q 041277 418 GEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERG 497 (1133)
Q Consensus 418 G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g 497 (1133)
|+|.+||+|+++++.+++|++|+||||+|++|++||+|||.+++++.++++++++++.++++++++++|+|+||.+||+|
T Consensus 520 G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G 599 (694)
T TIGR03375 520 GSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERG 599 (694)
T ss_pred ceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCC
Confidence 99999999999999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEe
Q 041277 498 VQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVME 577 (1133)
Q Consensus 498 ~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~ 577 (1133)
.+|||||||||+||||++++|+|+|||||||+||+++++.+++.+.+..+++|+|+||||+++++.||+|++|++|+++|
T Consensus 600 ~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e 679 (694)
T TIGR03375 600 RSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVA 679 (694)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEe
Confidence 99999999999999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred ecCcchhcc
Q 041277 578 TGSHDELIQ 586 (1133)
Q Consensus 578 ~g~~~~l~~ 586 (1133)
+|+|+||++
T Consensus 680 ~G~~~eLl~ 688 (694)
T TIGR03375 680 DGPKDQVLE 688 (694)
T ss_pred eCCHHHHHH
Confidence 999999986
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-82 Score=722.55 Aligned_cols=549 Identities=24% Similarity=0.313 Sum_probs=485.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 41 IGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACFLEGYCWTRTGERQATRMRARYL 120 (1133)
Q Consensus 41 ~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~ 120 (1133)
+++.+.++......+++..+++.+... .....+..+...+++..+++.++.+.+.....+++.++...+|..++
T Consensus 7 ll~~l~~i~~i~qa~llA~~l~~l~~~------~~~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l 80 (559)
T COG4988 7 LLAVLSGIAIIAQAALLADILTKLIEG------QLFQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVL 80 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444455666666655433 11233444555566667788899999999999999999999999999
Q ss_pred HHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 041277 121 KAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLWRLAIVGFPFVVLLVIPGL 200 (1133)
Q Consensus 121 ~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~ 200 (1133)
+|+.+++..+-+. . ++|+..+.++..++.++.+++..++.++.+.+.++..++.+++++|.-+++.++++|++.+++.
T Consensus 81 ~~l~~~gp~~~~~-~-~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMi 158 (559)
T COG4988 81 DKLAKLGPAFIAQ-K-PAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMI 158 (559)
T ss_pred HHHHhCChhhhcC-C-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999985 6 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 041277 201 MYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGLKQGLAKGLAIG-SNGVTFGIW 279 (1133)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 279 (1133)
.++++.++..++..+.+.++++++.|.++|+.|+|.|+..+...+++.+..++.++..++.-++.-+... ..++.+++.
T Consensus 159 lvg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsi 238 (559)
T COG4988 159 LVGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSI 238 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999988777766666 788888887
Q ss_pred HHHHHHHHHHHHh-cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccccccccc
Q 041277 280 SFLCYYGSRMVMY-HGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEILENVL 358 (1133)
Q Consensus 280 ~~~~~~g~~~v~~-~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~ 358 (1133)
+++..+.+..... |++|....+.++...--++.|+..+...++.-+.+.+|.+.++.+++.+++...............
T Consensus 239 AlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~ 318 (559)
T COG4988 239 ALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPP 318 (559)
T ss_pred HHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCC
Confidence 7776666666666 899988887777777777889999999999999999999999999987654322111001111123
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhh
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 438 (1133)
.+++.+|++|.|++.+ ++++|+||++++|+.+||||+||||||||+++|+|+++|++|+|.+||+++++++.+.||++
T Consensus 319 ~ei~~~~l~~~y~~g~--~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~ 396 (559)
T COG4988 319 IEISLENLSFRYPDGK--PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQ 396 (559)
T ss_pred ceeeecceEEecCCCC--cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhH
Confidence 3455669999998653 69999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCC
Q 041277 439 MGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAP 518 (1133)
Q Consensus 439 i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~ 518 (1133)
++||+|+|++|++||||||.+++++.+++++.++++.+++.+|+.. |+|+||.+||+|.+|||||+||+++|||+++++
T Consensus 397 i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~ 475 (559)
T COG4988 397 ISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPA 475 (559)
T ss_pred eeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred CEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhccccchhhHHHHHh
Q 041277 519 RILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRL 598 (1133)
Q Consensus 519 ~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 598 (1133)
+++|||||||+||.++|+.|++.|.++.+++|+|+||||++.+.+||+|+|||+|+++++|+|++|.+ +++.|++++..
T Consensus 476 ~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~-~~~~y~~l~~~ 554 (559)
T COG4988 476 SLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSE-KQGLYANLLKQ 554 (559)
T ss_pred CEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhh-cCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998 69999999988
Q ss_pred hcC
Q 041277 599 QTT 601 (1133)
Q Consensus 599 ~~~ 601 (1133)
|..
T Consensus 555 q~~ 557 (559)
T COG4988 555 QEG 557 (559)
T ss_pred Hhc
Confidence 753
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-82 Score=778.28 Aligned_cols=566 Identities=31% Similarity=0.474 Sum_probs=491.7
Q ss_pred HHHHHhhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 041277 21 FRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACFLE 100 (1133)
Q Consensus 21 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (1133)
+++++++.++.++. +++.+++.++..+.....+++++.++|..... ... .......+.+++++++..++.+++
T Consensus 13 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~---~~~---~~~~~~~~~~~~~~l~~~~~~~~~ 85 (582)
T PRK11176 13 FRRLWPTIAPFKAG-LIVAGVALILNAASDTFMLSLLKPLLDDGFGK---ADR---SVLKWMPLVVIGLMILRGITSFIS 85 (582)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---Cch---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456655544333 33444455555555555667888888865432 110 111112222334556677788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 041277 101 GYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLM 180 (1133)
Q Consensus 101 ~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (1133)
.++..+.+.++..++|..+++++++.|.++|++ . ++|++++|+++|++.+++.+...+..++.+++.+++.+++++++
T Consensus 86 ~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~-~-~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (582)
T PRK11176 86 SYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDK-Q-STGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYY 163 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-C-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999999999999999999996 6 89999999999999999999998899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHH
Q 041277 181 LWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGLK 260 (1133)
Q Consensus 181 ~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 260 (1133)
+|.+++++++++|+.+++..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|++..++..+...+
T Consensus 164 ~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (582)
T PRK11176 164 SWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMK 243 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888888999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041277 261 QGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEMIK 339 (1133)
Q Consensus 261 ~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~ 339 (1133)
.......... ..++..+...+++++|++.+..|.+|+|.+++++.+......|+..+...+..+++++.+.+|+.++++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~ 323 (582)
T PRK11176 244 MVSASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILD 323 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8877776666 666666677778899999999999999999988888888888999999999999999999999999998
Q ss_pred cCCCCCCCCCcccccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccE
Q 041277 340 RVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGE 419 (1133)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~ 419 (1133)
.+++.+.. ....++..+.|+++||+|+|++. ++++|+|+||+|++||++||+||||||||||+++|+|+|+|++|+
T Consensus 324 ~~~~~~~~---~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~ 399 (582)
T PRK11176 324 LEQEKDEG---KRVIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGE 399 (582)
T ss_pred CCCcCCCC---CcCCCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCce
Confidence 65432211 11122234579999999999753 356999999999999999999999999999999999999999999
Q ss_pred EEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCC-CCHHHHHHHHHHhchHHHHHhCCCcccccccCCCC
Q 041277 420 IILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKED-ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGV 498 (1133)
Q Consensus 420 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~ 498 (1133)
|++||+|+++++.+++|++|+||||||++|++||+|||.+|.++ .++++++++++.++++++++++|+|+||.+||+|.
T Consensus 400 I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~ 479 (582)
T PRK11176 400 ILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGV 479 (582)
T ss_pred EEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCC
Confidence 99999999999999999999999999999999999999999764 78999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEee
Q 041277 499 QMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMET 578 (1133)
Q Consensus 499 ~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~ 578 (1133)
+|||||||||+||||++++|+|||||||||+||+++++.+.+.|.+..+++|+|+||||++.++.||+|++|++|+++|+
T Consensus 480 ~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~ 559 (582)
T PRK11176 480 LLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVER 559 (582)
T ss_pred cCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred cCcchhccccchhhHHHHHhhc
Q 041277 579 GSHDELIQAESGLYTSLVRLQT 600 (1133)
Q Consensus 579 g~~~~l~~~~~~~~~~~~~~~~ 600 (1133)
|+|+++++ +++.|++++..|.
T Consensus 560 g~~~~l~~-~~~~y~~l~~~~~ 580 (582)
T PRK11176 560 GTHAELLA-QNGVYAQLHKMQF 580 (582)
T ss_pred CCHHHHHh-CCChHHHHHHHHh
Confidence 99999998 5789999987653
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-85 Score=708.74 Aligned_cols=555 Identities=27% Similarity=0.356 Sum_probs=463.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhh-hhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 38 LGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFT-HNINKNTVHLLY--LALGSWVACFLEGYCWTRTGERQATR 114 (1133)
Q Consensus 38 ~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (1133)
.+.++.++.-+.....|.+.++++|.+... + .+. +.+..+..+.++ .+-+..++.-+++++|....+-..++
T Consensus 219 ~cl~ll~i~rli~~~~pi~~k~iv~~ltap---~--~~~~~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~ 293 (790)
T KOG0056|consen 219 FCLFLLIIGRLINVSLPILSKWIVDELTAP---D--TFQYSLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTRE 293 (790)
T ss_pred HHHHHHHHHHHHhhhhHHhHHHHHHhhcCc---c--hhhHHHHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHH
Confidence 334444444444555667888999877533 1 111 111111111111 12234567778888888889999999
Q ss_pred HHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHH
Q 041277 115 MRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYL-VAFLMLWRLAIVGFPFVV 193 (1133)
Q Consensus 115 lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~l~~l~~~~ 193 (1133)
+-.++|+|+.++++.|+-+ + ++|+++..+....+.+. ++...+.++...+.-+.++++ +...++|+.+|++++++.
T Consensus 294 ie~~lfrHlh~LSlrwHL~-r-rtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m~ 370 (790)
T KOG0056|consen 294 IETELFRHLHNLSLRWHLN-R-RTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMML 370 (790)
T ss_pred HHHHHHHHHHhhceeeeec-c-cccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHHHH
Confidence 9999999999999999985 6 89999888777666554 443333333333333333333 344579999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 041277 194 LLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGLKQGLAKGLAIG-SN 272 (1133)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 272 (1133)
++..+...+.....+.++++..+..+......+++-|.+|||-||+|+++.++|.+...++.+.+.|......+... .+
T Consensus 371 lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn 450 (790)
T KOG0056|consen 371 LYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQN 450 (790)
T ss_pred HHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88888777777777888888888788888889999999999999999999999999999998888876655554444 34
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccc
Q 041277 273 GVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGE 352 (1133)
Q Consensus 273 ~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~ 352 (1133)
.+..++.+..-.+.+|+|..+.+|+|+++.+..|++...+|++.+......++++..-.++++++++++|+..+ .++..
T Consensus 451 ~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd-~P~a~ 529 (790)
T KOG0056|consen 451 GIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVD-LPGAP 529 (790)
T ss_pred hhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhc-CCCCC
Confidence 44444444455566777888999999999999999999999999999999999999999999999998877642 22333
Q ss_pred ccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCH
Q 041277 353 ILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQL 432 (1133)
Q Consensus 353 ~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~ 432 (1133)
+....+|.|+|+||+|.|++ .+++|+||||++.||+++|+|||||+||||++++|.|+|+.++|.|.|||+||++...
T Consensus 530 pl~~~~G~i~fsnvtF~Y~p--~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~ 607 (790)
T KOG0056|consen 530 PLKVTQGKIEFSNVTFAYDP--GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQ 607 (790)
T ss_pred CccccCCeEEEEEeEEecCC--CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHH
Confidence 44556799999999999974 4579999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHH
Q 041277 433 KWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIAR 512 (1133)
Q Consensus 433 ~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iAR 512 (1133)
.++|++||+||||..||++||..||.|++|.+++||+.+|++.+++||-|.++|+||+|.|||+|-.||||||||+||||
T Consensus 608 ~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiAR 687 (790)
T KOG0056|consen 608 SSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIAR 687 (790)
T ss_pred HHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhccccchhh
Q 041277 513 AIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLY 592 (1133)
Q Consensus 513 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 592 (1133)
+++++|.|++|||+|||||..+|+.||.++.++..++|.|+|+||++++-+||.|+|+++|+|+|.|+|+||++.++|.|
T Consensus 688 tiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~Y 767 (790)
T KOG0056|consen 688 TILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGAY 767 (790)
T ss_pred HHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998779999
Q ss_pred HHHHHhhcCCC
Q 041277 593 TSLVRLQTTTP 603 (1133)
Q Consensus 593 ~~~~~~~~~~~ 603 (1133)
++||+.|+...
T Consensus 768 a~MWq~qqa~g 778 (790)
T KOG0056|consen 768 ADMWQAQQAMG 778 (790)
T ss_pred HHHHHHHHhcC
Confidence 99998776543
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-81 Score=787.12 Aligned_cols=567 Identities=28% Similarity=0.393 Sum_probs=495.6
Q ss_pred chHHHHHhhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 041277 19 GSFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACF 98 (1133)
Q Consensus 19 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (1133)
..+++++++.+++++ .+...++++++..+.....|++++.++|.+.... + ...+....+.++++.++..++.+
T Consensus 125 ~~~~~~~~~~~~~~~-~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~--~----~~~l~~l~~~~~~~~~~~~~~~~ 197 (694)
T TIGR01846 125 FGFSWFIPAIIRYRK-QFREVLLISLALQLFALVTPLLFQVVIDKVLVHR--G----LSTLSVLALAMLAVAIFEPALGG 197 (694)
T ss_pred CcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC--C----hhHHHHHHHHHHHHHHHHHHHHH
Confidence 446666666554433 2333444444444455556678899999765321 1 11222333344455566778889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 041277 99 LEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAF 178 (1133)
Q Consensus 99 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (1133)
++.++..+.+.++..++|.++|+|++++|+++|++ . ++|++++|+ +|++.+++++...+...+.++...++.+++++
T Consensus 198 l~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~f~~-~-~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~ 274 (694)
T TIGR01846 198 LRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFES-R-RVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMF 274 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHcCC-C-CHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999996 6 999999999 69999999998877777777777777788999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHH
Q 041277 179 LMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLG 258 (1133)
Q Consensus 179 ~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~ 258 (1133)
+++|+++++.++++|+++++..++.++.++..++..+..++.++.+.|.++|+++||+||.|+.+.++|.+..++..+..
T Consensus 275 ~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~ 354 (694)
T TIGR01846 275 FYSPTLTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAAS 354 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988898999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 259 LKQGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEM 337 (1133)
Q Consensus 259 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~ 337 (1133)
.+.....+.... ..++..+..++++|+|++++.+|.+|+|.++++..+......|+..+...+..+++++.+.+|+.++
T Consensus 355 ~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~ 434 (694)
T TIGR01846 355 FRVTNLGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDI 434 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888777766 6667777778889999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCCCcccccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCc
Q 041277 338 IKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLG 417 (1133)
Q Consensus 338 l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~ 417 (1133)
++.+++.+.. .....+...+.|+++||+|+|++. ++++|+|+||+|++||++||+|+||||||||+++|+|+|+|++
T Consensus 435 l~~~~e~~~~--~~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~ 511 (694)
T TIGR01846 435 LNSPTEPRSA--GLAALPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQH 511 (694)
T ss_pred HcCCCCccCC--CCCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 9876543211 111122335689999999999753 3469999999999999999999999999999999999999999
Q ss_pred cEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCC
Q 041277 418 GEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERG 497 (1133)
Q Consensus 418 G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g 497 (1133)
|+|++||+|+++++.+++|++|+||||+|.+|++||+|||.++.++.++++++++|+.++++++++++|+|+||.+|++|
T Consensus 512 G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g 591 (694)
T TIGR01846 512 GQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKG 591 (694)
T ss_pred ceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCC
Confidence 99999999999999999999999999999999999999999998888999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEe
Q 041277 498 VQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVME 577 (1133)
Q Consensus 498 ~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~ 577 (1133)
.+||||||||++||||++++|+|||||||||+||+++++.+.+.|++..+++|+|+||||+++++.||+|++|++|++++
T Consensus 592 ~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~ 671 (694)
T TIGR01846 592 ANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAE 671 (694)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred ecCcchhccccchhhHHHHHhh
Q 041277 578 TGSHDELIQAESGLYTSLVRLQ 599 (1133)
Q Consensus 578 ~g~~~~l~~~~~~~~~~~~~~~ 599 (1133)
+|+|+|+++ .++.|+++++.|
T Consensus 672 ~g~~~~l~~-~~~~y~~l~~~~ 692 (694)
T TIGR01846 672 SGRHEELLA-LQGLYARLWQQQ 692 (694)
T ss_pred eCCHHHHHH-cCChHHHHHHhh
Confidence 999999998 579999998755
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-81 Score=768.33 Aligned_cols=565 Identities=25% Similarity=0.355 Sum_probs=476.9
Q ss_pred HHHHHhhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 041277 21 FRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACFLE 100 (1133)
Q Consensus 21 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (1133)
+++++++..++++ .+++.+++.++..+..+..|++++.++|...... +. .. .....+.+.++++.++..++.+++
T Consensus 11 ~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~--~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~ 85 (592)
T PRK10790 11 LKRLLAYGSPWRK-PLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKG--NL-PL-GLVAGLAAAYVGLQLLAAGLHYAQ 85 (592)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--Cc-ch-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555544433 3445566666666667777788999999764321 10 00 011111222333444566778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 041277 101 GYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLM 180 (1133)
Q Consensus 101 ~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (1133)
.+...+.+.++..++|.++|+++++.|.++|++ . ++|++++|+++|++.+++.+...+..++.++..+++.+++++++
T Consensus 86 ~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~-~-~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (592)
T PRK10790 86 SLLFNRAAVGVVQQLRTDVMDAALRQPLSAFDT-Q-PVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSL 163 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-C-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999999999999999999995 6 99999999999999999999999888999998888888999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHH
Q 041277 181 LWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGLK 260 (1133)
Q Consensus 181 ~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 260 (1133)
+|.+++++++++|+.+++..++.++.++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|.+..++..+...+
T Consensus 164 ~~~l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (592)
T PRK10790 164 DWRMALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQ 243 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888888888888888888888888899999999999999999999999999999999988888777776
Q ss_pred HHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041277 261 QGLAKGLA-IG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEMI 338 (1133)
Q Consensus 261 ~~~~~~~~-~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l 338 (1133)
.....+.. .+ ..++..+...+++++++. +..|.+++|.++++..+......|+..+...+..+.++..+++|+.+++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l 322 (592)
T PRK10790 244 TLRLDGFLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELM 322 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66655443 22 222222222222233333 5789999999999999998899999999999999999999999999999
Q ss_pred ccCCCCCCCCCcccccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCcc
Q 041277 339 KRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGG 418 (1133)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G 418 (1133)
+.+++... . . . .....++|+++||+|+|+++ +++|+|+||++++||++||||+||||||||+++|+|+|+|++|
T Consensus 323 ~~~~~~~~-~-~-~-~~~~~~~i~~~~v~f~y~~~--~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G 396 (592)
T PRK10790 323 DGPRQQYG-N-D-D-RPLQSGRIDIDNVSFAYRDD--NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEG 396 (592)
T ss_pred cCCCccCC-C-C-c-cCCCCCeEEEEEEEEEeCCC--CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCc
Confidence 86543211 1 1 1 11234679999999999742 4599999999999999999999999999999999999999999
Q ss_pred EEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCC
Q 041277 419 EIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGV 498 (1133)
Q Consensus 419 ~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~ 498 (1133)
+|.+||+|+++++.+++|++|+||||||.+|++||+|||.++. +.++++++++++.++++++++++|+|+||.+||+|.
T Consensus 397 ~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~-~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~ 475 (592)
T PRK10790 397 EIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGN 475 (592)
T ss_pred eEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC-CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCC
Confidence 9999999999999999999999999999999999999999997 688999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEee
Q 041277 499 QMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMET 578 (1133)
Q Consensus 499 ~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~ 578 (1133)
+|||||||||+||||++++|+|+|||||||+||+++++.+.+.|++..+++|+|+||||++.++.||+|++|++|++++.
T Consensus 476 ~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~ 555 (592)
T PRK10790 476 NLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQ 555 (592)
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred cCcchhccccchhhHHHHHhhcC
Q 041277 579 GSHDELIQAESGLYTSLVRLQTT 601 (1133)
Q Consensus 579 g~~~~l~~~~~~~~~~~~~~~~~ 601 (1133)
|+|+||++ .++.|+++++.|..
T Consensus 556 G~~~~L~~-~~~~y~~l~~~~~~ 577 (592)
T PRK10790 556 GTHQQLLA-AQGRYWQMYQLQLA 577 (592)
T ss_pred cCHHHHHh-CCCHHHHHHHHHhh
Confidence 99999998 57999999987743
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-80 Score=764.63 Aligned_cols=564 Identities=30% Similarity=0.459 Sum_probs=500.8
Q ss_pred HHHHhhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 22 RSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACFLEG 101 (1133)
Q Consensus 22 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (1133)
++++++.++. +..++++++++++.+++.+..+++++.++|..... .. ...+......++++.++..++.+++.
T Consensus 3 ~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~---~~~~~~~~~~~~~~~i~~~~~~~~~~ 75 (571)
T TIGR02203 3 RRLWSYVRPY-KAGLVLAGVAMILVAATESTLAALLKPLLDDGFGG---RD---RSVLWWVPLVVIGLAVLRGICSFVST 75 (571)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc---Cc---hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455554443 34456677777777778888888888888864432 11 11222223344555667778889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 041277 102 YCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLML 181 (1133)
Q Consensus 102 ~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (1133)
++..+.+.++..++|..+++++++.|.++|++ . ++|++.+|+++|++.+++.+.+.+..++.+++.+++.++++++++
T Consensus 76 ~~~~~~~~~~~~~lr~~l~~~~~~~~~~~~~~-~-~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 153 (571)
T TIGR02203 76 YLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDR-Q-PTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYS 153 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-C-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999995 6 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHHH
Q 041277 182 WRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGLKQ 261 (1133)
Q Consensus 182 ~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 261 (1133)
|.++++.++..|+.+++..++.++.++..++.++..++..+.+.|.++|+++||+++.|+.+.++|++..++..+...+.
T Consensus 154 ~~l~~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (571)
T TIGR02203 154 WQLTLIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKM 233 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 041277 262 GLAKGLAIG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEMIKR 340 (1133)
Q Consensus 262 ~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~ 340 (1133)
....+.... ..++..+..++++++|++++.+|.+|+|.++++..++.....|+..+...+..+++++.+.+|+.++++.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~ 313 (571)
T TIGR02203 234 TSAGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDS 313 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 888777766 6666777778889999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCCCcccccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEE
Q 041277 341 VPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI 420 (1133)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i 420 (1133)
+++.+... ....+..+.|+++||+|+|++. ++++|+|+||++++||+++|+|+||||||||+++|+|+|+|++|+|
T Consensus 314 ~~~~~~~~---~~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I 389 (571)
T TIGR02203 314 PPEKDTGT---RAIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQI 389 (571)
T ss_pred CCCCCCCC---CCCCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeE
Confidence 65432111 1112234679999999999754 3569999999999999999999999999999999999999999999
Q ss_pred EECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCC-CCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCC
Q 041277 421 ILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKE-DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQ 499 (1133)
Q Consensus 421 ~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~ 499 (1133)
.+||+++++++.+++|++|+||||+|++|++|++|||.++.+ +.++++++++++.+++++++.++|+|+||.+|++|.+
T Consensus 390 ~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~ 469 (571)
T TIGR02203 390 LLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVL 469 (571)
T ss_pred EECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCc
Confidence 999999999999999999999999999999999999999986 7899999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeec
Q 041277 500 MSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETG 579 (1133)
Q Consensus 500 LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g 579 (1133)
|||||||||+||||++++|+|+|||||||+||+++++.+.+.|++..+++|+|+||||++.+..||+|++|++|++++.|
T Consensus 470 LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g 549 (571)
T TIGR02203 470 LSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERG 549 (571)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeC
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred CcchhccccchhhHHHHHhh
Q 041277 580 SHDELIQAESGLYTSLVRLQ 599 (1133)
Q Consensus 580 ~~~~l~~~~~~~~~~~~~~~ 599 (1133)
+|+++++ .++.|++++..+
T Consensus 550 ~~~~l~~-~~~~~~~~~~~~ 568 (571)
T TIGR02203 550 THNELLA-RNGLYAQLHNMQ 568 (571)
T ss_pred CHHHHHH-cCCHHHHHHHHh
Confidence 9999997 478898887654
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-80 Score=755.18 Aligned_cols=565 Identities=28% Similarity=0.347 Sum_probs=484.8
Q ss_pred HHHHHhhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 041277 21 FRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACFLE 100 (1133)
Q Consensus 21 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (1133)
+++++++.+++++ .++++++++++..+..++.|+++++++|.+... . . .. ...+.+++..++..+..++.
T Consensus 7 ~~~l~~~l~~~k~-~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~---~--~---~~-~~~~~~~~~~~~~~~~~~~~ 76 (585)
T TIGR01192 7 YVRALSYLNVHKN-RVLLIVIANITLAAITIAEPILFGRIIDAISSK---S--D---VL-PTLALWAGFGVFNTIAYVLV 76 (585)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---c--c---HH-HHHHHHHHHHHHHHHHHHHH
Confidence 5567777665543 445666777777777788889999999976432 1 0 01 11111122233334444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 041277 101 GYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLM 180 (1133)
Q Consensus 101 ~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (1133)
.+...+.+.++..++|.++|+|++++|++||++ + ++|++++|+++|++.+++.+...+...+..++.+++.+++++++
T Consensus 77 ~~~~~~~~~~~~~~lr~~~~~~l~~l~~~~~~~-~-~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 154 (585)
T TIGR01192 77 AREADRLAHGRRATLLTEAFGRIISMPLSWHQQ-R-GTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAM 154 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-C-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666666777789999999999999996 6 89999999999999999999888888888888888888899999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHH
Q 041277 181 LWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGLK 260 (1133)
Q Consensus 181 ~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 260 (1133)
+|.+++++++++|+++++..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.+++++..++..+...+
T Consensus 155 ~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (585)
T TIGR01192 155 DWRLSIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYP 234 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988888899999999999999999999999999999999999999988888777
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041277 261 QGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEMIK 339 (1133)
Q Consensus 261 ~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~ 339 (1133)
.....+.... ..++..+..++++++|++++.+|.+|+|.++++..+......|+..+...+..+.++..+.+|+.++++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~ 314 (585)
T TIGR01192 235 VLDWWALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLED 314 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 7776666655 555666667778899999999999999999999988888888999999999999999999999999998
Q ss_pred cCCCCCCCCCcccccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccE
Q 041277 340 RVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGE 419 (1133)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~ 419 (1133)
.+++.+... .....+...+.|+++||+|+|++. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+
T Consensus 315 ~~~~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~ 391 (585)
T TIGR01192 315 SVFQREEPA-DAPELPNVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQ 391 (585)
T ss_pred CCccccCCc-cCCCCCCCCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCE
Confidence 654422111 111112234579999999999753 35899999999999999999999999999999999999999999
Q ss_pred EEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCC
Q 041277 420 IILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQ 499 (1133)
Q Consensus 420 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~ 499 (1133)
|.+||.++++++.+++|++++||||+|++|++|++|||.++.++.++++++++++.+++++++.++|+|++|.+|++|.+
T Consensus 392 i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~ 471 (585)
T TIGR01192 392 ILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNR 471 (585)
T ss_pred EEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCC
Confidence 99999999999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeec
Q 041277 500 MSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETG 579 (1133)
Q Consensus 500 LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g 579 (1133)
||||||||++|||||+++|+++|||||||+||+++++.+.+.|++..+++|+|+||||+++++.||+|++|++|++++.|
T Consensus 472 LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g 551 (585)
T TIGR01192 472 LSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKG 551 (585)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999999888899999999999999999999999999999999
Q ss_pred CcchhccccchhhHHHHHhhcC
Q 041277 580 SHDELIQAESGLYTSLVRLQTT 601 (1133)
Q Consensus 580 ~~~~l~~~~~~~~~~~~~~~~~ 601 (1133)
+|+++++ +++.|++++..+..
T Consensus 552 ~~~~l~~-~~~~y~~l~~~~~~ 572 (585)
T TIGR01192 552 SFQELIQ-KDGRFYKLLRRSGL 572 (585)
T ss_pred CHHHHHH-CCChHHHHHHhCcc
Confidence 9999998 68999999987643
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-80 Score=760.87 Aligned_cols=568 Identities=28% Similarity=0.364 Sum_probs=481.9
Q ss_pred chHHHHHhhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 041277 19 GSFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACF 98 (1133)
Q Consensus 19 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (1133)
..+++++++.++. +..+.+.++++++..++.+..|++++.++|.+... . ......+.+++++++..+..+
T Consensus 5 ~~~~~l~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~---~------~~~~~~~~~~~~~~~~~~~~~ 74 (588)
T PRK13657 5 RLYARVLQYLGAE-KRLGILLAVANVLLAAATFAEPILFGRIIDAISGK---G------DIFPLLAAWAGFGLFNIIAGV 74 (588)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---c------cHHHHHHHHHHHHHHHHHHHH
Confidence 3466677766543 33344555555555566666678889999976432 0 111111222222233333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 041277 99 LEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAF 178 (1133)
Q Consensus 99 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (1133)
+......+...++..++|.++|+|++++|..+|++ . ++|++++|+++|++.+.+.+...+..++..++.+++.+++++
T Consensus 75 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~-~-~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (588)
T PRK13657 75 LVARHADRLAHRRRLAVLTEYFERIIQLPLAWHSQ-R-GSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLAL 152 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHCc-C-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455566666677779999999999999996 6 999999999999999998888777778877777888888899
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHH
Q 041277 179 LMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLG 258 (1133)
Q Consensus 179 ~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~ 258 (1133)
+++|++++++++++|+.+++..++.++.++..++.++..++..+.+.|.++|+++||.|+.++.+.+++.+..++..+..
T Consensus 153 ~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~ 232 (588)
T PRK13657 153 FMNWRLSLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQ 232 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 259 LKQGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEM 337 (1133)
Q Consensus 259 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~ 337 (1133)
.+.....+.... ..++..+...+++++|++++.+|.+|+|.++++..+......|+..+...+..+..+..+.+|+.++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l 312 (588)
T PRK13657 233 MPVLSWWALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEV 312 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877777766655 5566666777888999999999999999999999888888899999999999999999999999999
Q ss_pred hccCCCCCCCCCcccccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCc
Q 041277 338 IKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLG 417 (1133)
Q Consensus 338 l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~ 417 (1133)
++.+++.+.. ......+...+.|+++||+|+|+++ +++|+|+||+++|||+++|+|+||||||||+++|+|+|+|++
T Consensus 313 ~~~~~~~~~~-~~~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~ 389 (588)
T PRK13657 313 EDAVPDVRDP-PGAIDLGRVKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQS 389 (588)
T ss_pred hCCCcccCCC-CCCCCcCCCCCeEEEEEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCC
Confidence 9865432211 1111112234579999999999743 359999999999999999999999999999999999999999
Q ss_pred cEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCC
Q 041277 418 GEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERG 497 (1133)
Q Consensus 418 G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g 497 (1133)
|+|.+||+++++++.+++|++|+||||+|++|++|++|||.++.++.++++++++++.+++++++.++|+|+||.+|++|
T Consensus 390 G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g 469 (588)
T PRK13657 390 GRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERG 469 (588)
T ss_pred CEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCC
Confidence 99999999999999999999999999999999999999999998888999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEe
Q 041277 498 VQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVME 577 (1133)
Q Consensus 498 ~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~ 577 (1133)
.+|||||||||+||||++++|+|+|||||||+||+++++.+.+.|++..+++|+|+||||++.++.||+|++|++|++++
T Consensus 470 ~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~ 549 (588)
T PRK13657 470 RQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVE 549 (588)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999998878999999999999999999999999999999
Q ss_pred ecCcchhccccchhhHHHHHhhcCC
Q 041277 578 TGSHDELIQAESGLYTSLVRLQTTT 602 (1133)
Q Consensus 578 ~g~~~~l~~~~~~~~~~~~~~~~~~ 602 (1133)
+|+|+++++ .++.|++++..+...
T Consensus 550 ~g~~~~l~~-~~~~y~~l~~~~~~~ 573 (588)
T PRK13657 550 SGSFDELVA-RGGRFAALLRAQGML 573 (588)
T ss_pred eCCHHHHHH-CCChHHHHHHHhhcc
Confidence 999999997 578999998866433
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-81 Score=695.46 Aligned_cols=552 Identities=28% Similarity=0.381 Sum_probs=465.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 39 GYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACFLEGYCWTRTGERQATRMRAR 118 (1133)
Q Consensus 39 ~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~ 118 (1133)
++++.+.+.+.....|.+++.++|....... .+. ...........+.+..++..++..++...+.++.+++..+.-.+
T Consensus 35 ~l~~l~~aK~l~v~vp~~~~~~id~l~~~~~-~~a-~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~ 112 (591)
T KOG0057|consen 35 ALGLLLGAKILNVQVPFIFKLIIDGLNDADG-NPA-VLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSD 112 (591)
T ss_pred HHHHHHhhhHhheehHHHHHHHHhhhhhccc-Ccc-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444455556667888888887631100 111 11122223344555667788899999999999999999999999
Q ss_pred HHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHH
Q 041277 119 YLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCY-LVAFLMLWRLAIVGFPFVVLLVI 197 (1133)
Q Consensus 119 ~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~l~~l~~~~~~~~ 197 (1133)
+|++++++++++|.+ . .+|.+.+.+..-...|...+...+..++..++-+.... .+-.-+++..+++.+..+..+..
T Consensus 113 vf~~~~~ld~~~~~~-~-~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a 190 (591)
T KOG0057|consen 113 VFRHLMSLDLSFFLS-R-GTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAA 190 (591)
T ss_pred HHHHHHhhhHHhhcC-C-CcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhe
Confidence 999999999999985 6 89999999999999998888776666666555433333 33344566677777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 041277 198 PGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGLKQGLAKGLAIG-SNGVTF 276 (1133)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 276 (1133)
+......+..+.+++.+++.++..+.+.|.+.|..+||+||.|+++.++|.....++.+...+.....++... ...+..
T Consensus 191 ~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFs 270 (591)
T KOG0057|consen 191 FTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFS 270 (591)
T ss_pred eEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHH
Confidence 7777778888888899999999999999999999999999999999999999999999988887777666555 444555
Q ss_pred HHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccccccc
Q 041277 277 GIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEILEN 356 (1133)
Q Consensus 277 ~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~ 356 (1133)
...+.+.+.|..-+.++.+|.|+++.......+...|+..+...+..+.++..-++..+...+....+. ....++..
T Consensus 271 v~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~---~~~~~i~~ 347 (591)
T KOG0057|consen 271 VALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQ---EAALPIEL 347 (591)
T ss_pred HHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhh---hccCCccc
Confidence 566677778888888999999999988888888888999888888888888877776665543322111 11122334
Q ss_pred ccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHh
Q 041277 357 VLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLR 436 (1133)
Q Consensus 357 ~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r 436 (1133)
.++.|+|+||+|+|++ ++++|+++||+|++||++||||+|||||||++++|+||++ ++|+|+|||+|+++++++.+|
T Consensus 348 ~~~~I~F~dV~f~y~~--k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR 424 (591)
T KOG0057|consen 348 FGGSIEFDDVHFSYGP--KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLR 424 (591)
T ss_pred CCCcEEEEeeEEEeCC--CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhh
Confidence 5678999999999984 3469999999999999999999999999999999999999 999999999999999999999
Q ss_pred hhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhh
Q 041277 437 SQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIK 516 (1133)
Q Consensus 437 ~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~ 516 (1133)
+.|||||||..||++||.+||.||++.++++++.++||.+++||-+.++|+||+|.+||+|..|||||||||+||||+++
T Consensus 425 ~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lK 504 (591)
T KOG0057|consen 425 QSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLK 504 (591)
T ss_pred hheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhccccchhhHHHH
Q 041277 517 APRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLV 596 (1133)
Q Consensus 517 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 596 (1133)
||||+++|||||+||.+||+.+.+.+.+...+||+|+|.||++++++||+|+++++|++.|.|+|+||+. +++.|+.+|
T Consensus 505 da~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~-~s~~~~~~w 583 (591)
T KOG0057|consen 505 DAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLA-PSELYADLW 583 (591)
T ss_pred CCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhh-hhhHHHHHh
Confidence 9999999999999999999999999999888999999999999999999999999999999999999999 899999999
Q ss_pred HhhcC
Q 041277 597 RLQTT 601 (1133)
Q Consensus 597 ~~~~~ 601 (1133)
..|..
T Consensus 584 ~~~~~ 588 (591)
T KOG0057|consen 584 TTQTS 588 (591)
T ss_pred ccccc
Confidence 87654
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-80 Score=756.83 Aligned_cols=524 Identities=23% Similarity=0.263 Sum_probs=446.8
Q ss_pred HHHhhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 23 SIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACFLEGY 102 (1133)
Q Consensus 23 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (1133)
+++++.+++++ .++++++++++..+.....|+++++++|..... .. . .........++++.++..++.++..+
T Consensus 3 ~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~---~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (529)
T TIGR02868 3 RILPLLQPRTR-RLVVAILLGALALGSAVALLGVSAWLISRAAEM---PP--V-LYLSVAAVAVRAFGIGRAVFRYLERL 75 (529)
T ss_pred hHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---ch--h-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556554433 334455555555666666678899999975422 10 0 00111111122344556777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhH
Q 041277 103 CWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLW 182 (1133)
Q Consensus 103 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (1133)
+..+.+.++..++|.++|+|++++|.+||++ . ++|++++|+++|++.+++.+...+..++..+..++++++++++++|
T Consensus 76 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~-~-~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 153 (529)
T TIGR02868 76 VGHDAALRSLGRLRVRVYDRLARLALAGRRR-F-QTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSV 153 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCcccccc-C-ChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999999999999999996 6 8999999999999999999999888889999989999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHHH
Q 041277 183 RLAIVGFPFVVLLVIPGLMYGRT-LMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGLKQ 261 (1133)
Q Consensus 183 ~l~l~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 261 (1133)
.+++++++.+|++.++...+.++ .++..++.++..++..+.+.|.++|+++||+|++|+.+.++|++..++..+...+.
T Consensus 154 ~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (529)
T TIGR02868 154 PAALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRA 233 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888876665444444 45666777888899999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 041277 262 GLAKGLAIG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEMIKR 340 (1133)
Q Consensus 262 ~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~ 340 (1133)
....+...+ ..++..+..++++|+|++++.+|.+|+|.++++..+......|+..+...+..++++.++.+|+.++++.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~ 313 (529)
T TIGR02868 234 ARATGLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGA 313 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 888877777 6666677777888999999999999999999999888888889988888999999999999999999987
Q ss_pred CCCCCCCCCc-ccccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccE
Q 041277 341 VPKIDSDSME-GEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGE 419 (1133)
Q Consensus 341 ~~~~~~~~~~-~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~ 419 (1133)
+++.+..... ........+.|+|+||+|+|+++ +++|+|+||++++||++|||||||||||||+++|+|+|+|++|+
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~ 391 (529)
T TIGR02868 314 KGPRPEGVVPAAGALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGE 391 (529)
T ss_pred CCCcCCCCCCCCcccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcE
Confidence 6543211110 11111234579999999999753 35999999999999999999999999999999999999999999
Q ss_pred EEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCC
Q 041277 420 IILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQ 499 (1133)
Q Consensus 420 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~ 499 (1133)
|.+||+|++++ .+++|++|+||||+|++|++||+|||.+|.|+.++++++++++.+++++++.++|+|+||.+||+|.+
T Consensus 392 I~i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~ 470 (529)
T TIGR02868 392 VTLDGVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGAR 470 (529)
T ss_pred EEECCEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCc
Confidence 99999999999 99999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCc
Q 041277 500 MSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRL 558 (1133)
Q Consensus 500 LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~ 558 (1133)
|||||||||+||||++++|+|||||||||+||+++|+.|++.+.+..+++|+|+||||+
T Consensus 471 LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 471 LSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 99999999999999999999999999999999999999999999988899999999995
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-82 Score=727.10 Aligned_cols=464 Identities=32% Similarity=0.513 Sum_probs=435.9
Q ss_pred hHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 041277 663 PSFRRLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINIIQHY 742 (1133)
Q Consensus 663 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (1133)
..+++++.+.+|+|+++..+.++.++........|.+++++++..+..+. ...........+.++.++..++++++.+
T Consensus 133 ~~~~rl~~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~--~~~~~~~~~~~l~~l~~~~a~~~~~r~~ 210 (716)
T KOG0058|consen 133 TLLKRLLGLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDD--SADALKRACTILLGLFLIGALANAIRGG 210 (716)
T ss_pred hHHHHHHHHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999998765111 1222333455667777888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhH
Q 041277 743 NFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAW 822 (1133)
Q Consensus 743 ~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~w 822 (1133)
++.++++++..+||.++|+++++++++||| +|.+|+|++|+++|+..+.+.++..+...+.+.+..++++.+|+.++|
T Consensus 211 ~~~~a~~rv~~rlR~~lF~sil~QdiaFFD--~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~ 288 (716)
T KOG0058|consen 211 LLQYAGERVVARLRTDLFRSLLRQDIAFFD--ENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSW 288 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhc--cCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhH
Confidence 999999999999999999999999999999 689999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHHHH
Q 041277 823 RLALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQS 902 (1133)
Q Consensus 823 ~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~ 902 (1133)
+|+++.++.+|++.+...++.++.++.+++.+++.++++....|.+++++|||+|+.|+++.+||.+..++..+...|.+
T Consensus 289 ~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a 368 (716)
T KOG0058|consen 289 RLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEA 368 (716)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccC
Q 041277 903 WYAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRY 982 (1133)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~ 982 (1133)
...+.++..+.+...+....+++||++++..|.+|.|++..|++|......++..+..++++++++..|.+|+|+++|++
T Consensus 369 ~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~ 448 (716)
T KOG0058|consen 369 VAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRK 448 (716)
T ss_pred HHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEE
Q 041277 983 TKIEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVK 1062 (1133)
Q Consensus 983 ~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~ 1062 (1133)
|.+++. .. ..|....|.|+|+||+|+||+||+.+||||+||+|+|||+||+||||||||||+++||+|||||++|+|+
T Consensus 449 P~i~~~-G~-~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~Il 526 (716)
T KOG0058|consen 449 PRIPLT-GT-LAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRIL 526 (716)
T ss_pred CCCCCC-Cc-cccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEE
Confidence 988654 21 2232568999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCcccCCCChhHHhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1063 IDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1063 IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
+||+||++++.++||++||+|.|||+||+|||+|||+||.+ .++||||++|||+||+||||+++|+||||
T Consensus 527 lDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~-~~t~e~i~~AAk~ANah~FI~~~p~gY~T 596 (716)
T KOG0058|consen 527 LDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLD-NATDEEIEAAAKMANAHEFITNFPDGYNT 596 (716)
T ss_pred ECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCC-CCCHHHHHHHHHHhChHHHHHhCcccccc
Confidence 99999999999999999999999999999999999999987 78999999999999999999999999998
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-79 Score=752.25 Aligned_cols=538 Identities=26% Similarity=0.362 Sum_probs=471.6
Q ss_pred HHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhh
Q 041277 52 LVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYF 131 (1133)
Q Consensus 52 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f 131 (1133)
+.|++++.++|.+... .. . ......+...++++.++..++.+++.++..+.+.++..++|.++|++++++|.++|
T Consensus 13 ~~p~~~~~iid~~~~~---~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~ 87 (569)
T PRK10789 13 IPPKVVGIIVDGVTEQ---HM-T-TGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFY 87 (569)
T ss_pred HHHHHHHHHHHHhccC---Cc-c-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 4456888899875422 10 0 01122233333444455667778888888889999999999999999999999999
Q ss_pred ccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 132 DLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVA-FLMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLA 210 (1133)
Q Consensus 132 ~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~ 210 (1133)
++ . ++|++++|+++|++.++..+...+..++..++.++++++++ ++++|++++++++++|+++++...+.++.++..
T Consensus 88 ~~-~-~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~ 165 (569)
T PRK10789 88 LR-H-RTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERF 165 (569)
T ss_pred cC-C-CHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 95 6 89999999999999999888777777777766666665555 589999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 041277 211 RKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGLKQGLAKGLAIG-SNGVTFGIWSFLCYYGSRM 289 (1133)
Q Consensus 211 ~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~ 289 (1133)
++.++..+++.+.+.|.++|+++||+|++|+.+.++|.+..++..+...+.....+...+ ...+..++.++++++|+++
T Consensus 166 ~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~l 245 (569)
T PRK10789 166 KLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWM 245 (569)
T ss_pred HHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988888888777776666 5555566667788899999
Q ss_pred HHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcccccccccccEEEEEEEEE
Q 041277 290 VMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFA 369 (1133)
Q Consensus 290 v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~ 369 (1133)
+.+|.+|+|.++++..+......|+..+...+..+++++++.+|+.++++.+++.+.. ....+...+.|+++|++|+
T Consensus 246 v~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~---~~~~~~~~~~I~~~~v~~~ 322 (569)
T PRK10789 246 VVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDG---SEPVPEGRGELDVNIRQFT 322 (569)
T ss_pred HHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC---CCCCCCCCCcEEEEEEEEE
Confidence 9999999999999999999888999999999999999999999999999876543211 1111223467999999999
Q ss_pred cCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCc
Q 041277 370 YPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALF 449 (1133)
Q Consensus 370 y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~ 449 (1133)
|+.. ++++|+|+||++++|++++|+||||||||||+++|+|+|+|++|+|.+||+++.+++..++|++++||+|+|++|
T Consensus 323 y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf 401 (569)
T PRK10789 323 YPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLF 401 (569)
T ss_pred CCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeec
Confidence 9753 346999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccC
Q 041277 450 ATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSA 529 (1133)
Q Consensus 450 ~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~ 529 (1133)
++|++|||.++.++.++++++++++.+++++++.++|+|++|.+|++|.+||||||||++||||++++|+|+|||||||+
T Consensus 402 ~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~ 481 (569)
T PRK10789 402 SDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSA 481 (569)
T ss_pred cccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccc
Confidence 99999999999888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhccccchhhHHHHHhhcC
Q 041277 530 LDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQTT 601 (1133)
Q Consensus 530 lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~ 601 (1133)
||+++++.+.+.|++..+++|+|+||||+++++.||+|++|++|+++++|+|+++++ .++.|+++++.|..
T Consensus 482 LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~-~~~~y~~l~~~~~~ 552 (569)
T PRK10789 482 VDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQ-QSGWYRDMYRYQQL 552 (569)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHH-cCChHHHHHHHhhh
Confidence 999999999999998888999999999999999999999999999999999999997 67899999987653
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-79 Score=754.37 Aligned_cols=569 Identities=35% Similarity=0.513 Sum_probs=489.3
Q ss_pred HHHHHhhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 041277 21 FRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACFLE 100 (1133)
Q Consensus 21 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (1133)
++.++++.++.++ .+.+.+++.++.++.....|++++.++|...... +. ........+++++.++..++.+++
T Consensus 6 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~ 78 (576)
T TIGR02204 6 LAALWPFVRPYRG-RVLAALVALLITAAATLSLPYAVRLMIDHGFSKD--SS----GLLNRYFAFLLVVALVLALGTAAR 78 (576)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccc--cH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555544333 3345555666666666777788999999743221 11 112222233334444556677888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 041277 101 GYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLM 180 (1133)
Q Consensus 101 ~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (1133)
.+...+.+.++..++|..++++++++|.++|++ . ++|++++|+++|++.+++.+...+..++.+++.+++.+++++++
T Consensus 79 ~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~-~-~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (576)
T TIGR02204 79 FYLVTWLGERVVADIRRAVFAHLISLSPSFFDK-N-RSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFIT 156 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcc-C-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999999999999999999985 6 89999999999999999999888888888898999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHH
Q 041277 181 LWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGLK 260 (1133)
Q Consensus 181 ~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 260 (1133)
+|++++++++.+|+.+++..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|++..++..+...+
T Consensus 157 ~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (576)
T TIGR02204 157 SPKLTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQ 236 (576)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888888899999999999999999999999999999999999999999999999999988887777
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041277 261 QGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEMIK 339 (1133)
Q Consensus 261 ~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~ 339 (1133)
.......... ..++..+..++++++|++++.+|.+|+|.++++..+......|+..+...+..+.+++.+.+|+.++++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~ 316 (576)
T TIGR02204 237 RIRTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQ 316 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 7666555555 445555566677889999999999999999999988888899999999999999999999999999998
Q ss_pred cCCCCCCCCCcccccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccE
Q 041277 340 RVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGE 419 (1133)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~ 419 (1133)
.+++.+..........+..+.|+++||+|+|+.+.++++|+|+||+++|||+++|+||||||||||+++|+|+|+|++|+
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~ 396 (576)
T TIGR02204 317 AEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGR 396 (576)
T ss_pred CCCcCCCCCCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCE
Confidence 65442211111111112235799999999998543356999999999999999999999999999999999999999999
Q ss_pred EEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCC
Q 041277 420 IILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQ 499 (1133)
Q Consensus 420 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~ 499 (1133)
|.+||.++++++..++|++|+|+||+|++|++||+|||.++.|+.++++++++++.++++++++++|+|++|.+||+|.+
T Consensus 397 I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~ 476 (576)
T TIGR02204 397 ILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVT 476 (576)
T ss_pred EEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCc
Confidence 99999999999999999999999999999999999999999888889999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeec
Q 041277 500 MSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETG 579 (1133)
Q Consensus 500 LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g 579 (1133)
||||||||++||||++++|+++|||||||+||+++++.+.+.+++..+++|+|+||||++.++.||+|++|++|++++.|
T Consensus 477 LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g 556 (576)
T TIGR02204 477 LSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQG 556 (576)
T ss_pred CCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeee
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred CcchhccccchhhHHHHHhh
Q 041277 580 SHDELIQAESGLYTSLVRLQ 599 (1133)
Q Consensus 580 ~~~~l~~~~~~~~~~~~~~~ 599 (1133)
+|+++++ +++.|++++..|
T Consensus 557 ~~~~l~~-~~~~~~~l~~~~ 575 (576)
T TIGR02204 557 THAELIA-KGGLYARLARLQ 575 (576)
T ss_pred cHHHHHH-cCChHHHHHhhc
Confidence 9999988 688999988654
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-79 Score=808.14 Aligned_cols=506 Identities=23% Similarity=0.287 Sum_probs=443.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHH
Q 041277 85 HLLYLALGSWVACFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFV 164 (1133)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~ 164 (1133)
.+++++++..++.++..++..+.+.+...++|.+++++++++|++|||+ . ++|+++||+++|++.+++.+...+..++
T Consensus 1010 iy~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~-~-~~G~ilnR~s~Di~~id~~l~~~~~~~~ 1087 (1522)
T TIGR00957 1010 VYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFER-T-PSGNLVNRFSKELDTVDSMIPPVIKMFM 1087 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhcc-C-ChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666777778888888889999999999999999999999999995 6 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHH
Q 041277 165 MNASLFFGCYLVAFLMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTI 244 (1133)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~ 244 (1133)
..++.+++.++++++.+|.+++++++++++++++..++.+..++..+...+..+.+.+++.|+++|+++||+|++|+.+.
T Consensus 1088 ~~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~ 1167 (1522)
T TIGR00957 1088 GSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFI 1167 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHH
Confidence 99999999999999999988877777777777778888888888888888888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-hcCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 245 NEFSSALQGSVQLGLKQGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVM-YHGAQGGTVFAVGASIAVGGLALGAGLPNLK 322 (1133)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~-~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~ 322 (1133)
+++.+..+...+..........+... ..++.. .++++.+...+. .|.+++|.+.+++.+......++..+...+.
T Consensus 1168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~ 1244 (1522)
T TIGR00957 1168 HQSDLKVDENQKAYYPSIVANRWLAVRLECVGN---CIVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSS 1244 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888777766554444443333 333222 233444555544 5789999999999999888899999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCCCcccccc--cccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCC
Q 041277 323 YFSEAMAAGERIMEMIKRVPKIDSDSMEGEILE--NVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGS 400 (1133)
Q Consensus 323 ~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~--~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGs 400 (1133)
.+..+++|++|+.++++.+++.+.......+++ +..|.|+|+||+|+|+++. +++|+|+||+|++||++||||+|||
T Consensus 1245 ~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~-~~vL~~is~~I~~GekiaIVGrTGs 1323 (1522)
T TIGR00957 1245 EMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDL-DLVLRHINVTIHGGEKVGIVGRTGA 1323 (1522)
T ss_pred HHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCC-cccccceeEEEcCCCEEEEECCCCC
Confidence 999999999999999987655321111111121 2457899999999997542 4699999999999999999999999
Q ss_pred cHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHH
Q 041277 401 GKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHN 480 (1133)
Q Consensus 401 GKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~ 480 (1133)
|||||+++|+|+|+|++|+|.+||+|+++++.+++|++|++|||||.||+|||||||.... +++++++++|++.+++++
T Consensus 1324 GKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~-~~sdeei~~al~~a~l~~ 1402 (1522)
T TIGR00957 1324 GKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFS-QYSDEEVWWALELAHLKT 1402 (1522)
T ss_pred CHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCccc-CCCHHHHHHHHHHcCcHH
Confidence 9999999999999999999999999999999999999999999999999999999998332 589999999999999999
Q ss_pred HHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcch
Q 041277 481 FIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLST 560 (1133)
Q Consensus 481 ~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~ 560 (1133)
++.++|+|+||.+||+|.+||||||||+||||||+++|+|||||||||+||+++++.|++.|++..+++|+|+||||+++
T Consensus 1403 ~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~t 1482 (1522)
T TIGR00957 1403 FVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNT 1482 (1522)
T ss_pred HHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998899999999999999
Q ss_pred hhcCCEEEEEeCCeEEeecCcchhccccchhhHHHHHh
Q 041277 561 IRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRL 598 (1133)
Q Consensus 561 ~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 598 (1133)
+.+||||+||++|+|+|.|+|+||++ +++.|+++++.
T Consensus 1483 i~~~DrIlVld~G~IvE~G~~~eLl~-~~~~f~~l~~~ 1519 (1522)
T TIGR00957 1483 IMDYTRVIVLDKGEVAEFGAPSNLLQ-QRGIFYSMAKD 1519 (1522)
T ss_pred HHhCCEEEEEECCEEEEECCHHHHHh-CCCHHHHHHHH
Confidence 99999999999999999999999998 47999999875
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-78 Score=671.18 Aligned_cols=553 Identities=22% Similarity=0.298 Sum_probs=459.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 33 MFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACFLEGYCWTRTGERQA 112 (1133)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (1133)
+..+.++++++++..+....+..+.|++|...... ...... .+...+...=.+++++.+..|...+..+.+..++.
T Consensus 15 ~~~l~Lgi~l~~~t~lasigLl~lSGwfisasAia---g~~~~f-~~~~p~a~VR~~aI~Rt~~RY~ERlvsH~AtfrvL 90 (573)
T COG4987 15 KFGLLLGIVLAILTLLASIGLLTLSGWFISASAIA---GLAYIF-NVMLPSAGVRGLAILRTAARYVERLVSHDATFRVL 90 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhc---cHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 44566777777776666666667889998864322 111000 11111112224677888889999999999999999
Q ss_pred HHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HH
Q 041277 113 TRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLWRLAIVGF-PF 191 (1133)
Q Consensus 113 ~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l-~~ 191 (1133)
.++|.++|+++...+..-..+ . ++|+++||+..|++.+++.+-..+...+..+....+..+.+-+++|.+++... ..
T Consensus 91 ~~lRv~~f~kl~p~sp~~~~r-~-r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~Alll~~~l 168 (573)
T COG4987 91 SALRVRLFEKLEPLSPALLLR-Y-RSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGLIL 168 (573)
T ss_pred HHHHHHHHHhhccCChHHHHh-c-ChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999999999998885 7 99999999999999999999888888888777777777777788898876544 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 041277 192 VVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGLKQGLAKGLAIG- 270 (1133)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 270 (1133)
+.+++++...+.+..++..++..+..+.+.+.+.|.+.|....+.||.++.+.+.+.+......+...|...+.++...
T Consensus 169 l~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~~~a~ 248 (573)
T COG4987 169 LLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAI 248 (573)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666677777788888888888999999999999999999999999999999999999998888888888887776
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhccCCCCCCCC
Q 041277 271 SNGVTFGIWS-FLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGL-PNLKYFSEAMAAGERIMEMIKRVPKIDSDS 348 (1133)
Q Consensus 271 ~~~~~~~~~~-~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~ 348 (1133)
..++..+..+ .++|.+ ..+-.|..+......+++.++....++..+. ..+....+...|++|+.++++++|+...+.
T Consensus 249 ~~l~~g~~v~~~l~w~a-~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~~~ 327 (573)
T COG4987 249 LLLIAGLLVIGLLLWMA-AQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFPD 327 (573)
T ss_pred HHHHHHHHHHHHHHHHH-hcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcccCCCc
Confidence 5444444443 344544 3445566654333333333333334444444 456788899999999999999887654331
Q ss_pred CcccccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecC
Q 041277 349 MEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSID 428 (1133)
Q Consensus 349 ~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~ 428 (1133)
. . .+.....++++||+|+|+++ +.++|+|+||++++||++||+|+|||||||++++|.|-|+|++|+|.++|.++.
T Consensus 328 ~--~-~~~~~~~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~ 403 (573)
T COG4987 328 E--Q-TATTGQALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIA 403 (573)
T ss_pred c--c-cCCccceeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChh
Confidence 1 1 11111279999999999976 457999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHH
Q 041277 429 KLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRI 508 (1133)
Q Consensus 429 ~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 508 (1133)
.++.+.+|+.|++++|.+.+|++|+|||+.+++|++++|++++++++++++++++..|+|++|.+||.|..||||||||+
T Consensus 404 ~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRL 483 (573)
T COG4987 404 SLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRL 483 (573)
T ss_pred hCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhcccc
Q 041277 509 AIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAE 588 (1133)
Q Consensus 509 ~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 588 (1133)
+|||+|++|+|++||||||.+||+.||+++.+.+.+..+|||+|+||||+..++.||||+||++|+++|+|+|.+|+. +
T Consensus 484 AlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~-~ 562 (573)
T COG4987 484 ALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLA-N 562 (573)
T ss_pred HHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhc-c
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999998 6
Q ss_pred chhhHHHHH
Q 041277 589 SGLYTSLVR 597 (1133)
Q Consensus 589 ~~~~~~~~~ 597 (1133)
++.|+++++
T Consensus 563 ~g~~~~l~q 571 (573)
T COG4987 563 NGRYKRLYQ 571 (573)
T ss_pred ccHHHHHhc
Confidence 899998865
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-78 Score=733.15 Aligned_cols=523 Identities=24% Similarity=0.299 Sum_probs=456.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhhc-CCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 36 MVLGYIGAIGDGFSTPLVLFLTSKFMNNIG-GVSNVPIDVFTHNINKNTVHLLYLALGSWVACFLEGYCWTRTGERQATR 114 (1133)
Q Consensus 36 ~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (1133)
+.++++++++.++..+..|+++++++|.+. ... . ...+..+...+++++++..++.+++.++..+.+.++..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (529)
T TIGR02857 5 LALLGLLGALGALLIIAQAWLLARVIDGLISAGE--P----LAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQ 78 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC--C----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666667777778889999999763 210 1 112233344445566677888999999999999999999
Q ss_pred HHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 041277 115 MRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLWRLAIVGFPFVVL 194 (1133)
Q Consensus 115 lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~~ 194 (1133)
+|.++|++++++|..+|++ . ++|++++|+++|++.+++.+...+..++..++.+++.++++++++|.+++++++.+|+
T Consensus 79 lr~~l~~~l~~~~~~~~~~-~-~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l 156 (529)
T TIGR02857 79 LRERLLAAVAALGPGWLQG-R-PSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPL 156 (529)
T ss_pred HHHHHHHHHHhCCchhhcc-C-ChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999996 6 9999999999999999999998888888888888888999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 041277 195 LVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGLKQGLAKGLAIG-SNG 273 (1133)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 273 (1133)
..++..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|++..++..+...+..+....... ..+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (529)
T TIGR02857 157 IPIFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLEL 236 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888899999999999999999999999999999999999999999888888777776665555 444
Q ss_pred HHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcccc
Q 041277 274 VTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEI 353 (1133)
Q Consensus 274 ~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~ 353 (1133)
+..+...+++.++++.+..|.+|+|.++++..+......|+..+...+..+++++.+++|+.++++.+++... . ...
T Consensus 237 ~~~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~-~--~~~ 313 (529)
T TIGR02857 237 FATLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAG-K--APV 313 (529)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC-C--cCC
Confidence 4444444545567777779999999999988888888889999999999999999999999999985432211 1 111
Q ss_pred cccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHH
Q 041277 354 LENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLK 433 (1133)
Q Consensus 354 ~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~ 433 (1133)
+....+.|+++||+|+|+++ ++++|+|+||+|++||+++|+||||||||||+++|+|+|+|++|+|.+||+|+++++.+
T Consensus 314 ~~~~~~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~ 392 (529)
T TIGR02857 314 TAAPAPSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADAD 392 (529)
T ss_pred CCCCCCeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHH
Confidence 11123579999999999854 24699999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHH
Q 041277 434 WLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARA 513 (1133)
Q Consensus 434 ~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa 513 (1133)
++|++++||+|+|++|++||+|||.++.++.++++++++++.++++++++++|+|+||.+||+|.+||||||||++||||
T Consensus 393 ~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRa 472 (529)
T TIGR02857 393 SWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARA 472 (529)
T ss_pred HHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHH
Confidence 99999999999999999999999999988889999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEE
Q 041277 514 IIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVV 570 (1133)
Q Consensus 514 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 570 (1133)
++++|+|+|||||||+||+++++.+.+.+++..+++|+|+||||+++++.||+|++|
T Consensus 473 l~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 473 FLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred HhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 999999999999999999999999999999988899999999999999999999985
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-77 Score=795.39 Aligned_cols=510 Identities=21% Similarity=0.287 Sum_probs=411.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHH
Q 041277 82 NTVHLLYLALGSWVACFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLP 161 (1133)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~ 161 (1133)
+...+++++++..++.+++.++..+.+.+...++|.+++++++++|++|||+ + ++|+++||+++|++.+++.+...+.
T Consensus 955 ~~~i~~~l~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~-~-~~G~IlnR~s~Di~~id~~l~~~~~ 1032 (1622)
T PLN03130 955 YNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHT-N-PLGRIINRFAKDLGDIDRNVAVFVN 1032 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhcc-C-CchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556667777888899999999999999999999999999999999995 6 9999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchH
Q 041277 162 NFVMNASLFFGCYLVAFLMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGES 241 (1133)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~ 241 (1133)
.++..++.+++.++++++++|...++++++..+++.+..++.+..++..+......+...+++.|+++|+++||+|++++
T Consensus 1033 ~~~~~~~~~i~~~i~i~~~~~~~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~ 1112 (1622)
T PLN03130 1033 MFLGQIFQLLSTFVLIGIVSTISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYD 1112 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHH
Confidence 99999888888888888888744333333322333344455566666666667778889999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---------ccHHHHHHHHHHHHHHHH
Q 041277 242 KTINEFSSALQGSVQLGLKQGLAKGLAIGSNGVTFGIWSFLCYYGSRMVMYHG---------AQGGTVFAVGASIAVGGL 312 (1133)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~---------~t~g~~~~~~~~~~~~~~ 312 (1133)
++.+++.+..+...+..........+... .+..+..+++++.+...+..+. .++|.++ .+......
T Consensus 1113 ~f~~~~~~~~~~~~~~~~~~~~~~~wl~~--~l~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~l---s~~~~~~~ 1187 (1622)
T PLN03130 1113 RMAEINGRSMDNNIRFTLVNMSSNRWLAI--RLETLGGLMIWLTASFAVMQNGRAENQAAFASTMGLLL---SYALNITS 1187 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHcccccccchhhhHHHHHHH---HHHHHHHH
Confidence 87777666555544332221111111111 0111111222222333344332 2233333 33444445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcccccc--cccccEEEEEEEEEcCCCCCCccccceeEEeeCCC
Q 041277 313 ALGAGLPNLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEILE--NVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGK 390 (1133)
Q Consensus 313 ~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~--~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~ 390 (1133)
++..+...+..+..+.+|++|+.++++.+++.+.......+++ +..|.|+|+||+|+|+++ .++||+|+||+|+|||
T Consensus 1188 ~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~VL~~is~~I~~Ge 1266 (1622)
T PLN03130 1188 LLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFEISPSE 1266 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CCceecceeEEEcCCC
Confidence 5566666777889999999999999987665321111111111 235789999999999643 2469999999999999
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHH
Q 041277 391 TVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVI 470 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~ 470 (1133)
++|||||||||||||+++|+|+|+|++|+|.|||+|+++++.+++|++|++|||||.||+|||||||.++. +.++++++
T Consensus 1267 kVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~-~~tdeei~ 1345 (1622)
T PLN03130 1267 KVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN-EHNDADLW 1345 (1622)
T ss_pred EEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCC-CCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999876 57899999
Q ss_pred HHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCe
Q 041277 471 EAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRT 550 (1133)
Q Consensus 471 ~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t 550 (1133)
+|++.+++++++.++|+|+||.+||+|.+|||||||||||||||+++|+|||||||||+||+++++.|++.|++..+++|
T Consensus 1346 ~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~T 1425 (1622)
T PLN03130 1346 ESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCT 1425 (1622)
T ss_pred HHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999989999
Q ss_pred EEEEecCcchhhcCCEEEEEeCCeEEeecCcchhccccchhhHHHHHhhc
Q 041277 551 TIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQT 600 (1133)
Q Consensus 551 ~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 600 (1133)
+|+||||++++.+||||+||++|+|+|.|+|+||++++++.|+++++.+.
T Consensus 1426 vI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~~~~g~f~~L~~~~~ 1475 (1622)
T PLN03130 1426 MLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQSTG 1475 (1622)
T ss_pred EEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCCHHHHHHHHcC
Confidence 99999999999999999999999999999999999855789999987654
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-76 Score=719.12 Aligned_cols=530 Identities=23% Similarity=0.300 Sum_probs=453.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 38 LGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACFLEGYCWTRTGERQATRMRA 117 (1133)
Q Consensus 38 ~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 117 (1133)
+.++++++..+...+.|+++++++|...... +. ..+..+...++++.++..++.+++.++..+.+.++..++|.
T Consensus 10 ~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~--~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 83 (544)
T TIGR01842 10 IVGLFSFVINILMLAPPLYMLQVYDRVLTSG--SV----PTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQ 83 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--ch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455556678899999764221 11 12222333444455667788888999999999999999999
Q ss_pred HHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 041277 118 RYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISE-KLPNFVMNASLFFGCYLVAFLMLWRLAIVGFPFVVLLV 196 (1133)
Q Consensus 118 ~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~ 196 (1133)
++|+|++++|+.. .+...+++++|++.+++.+.. .+..++..++.++ .++++++++|++++++++.+|+++
T Consensus 84 ~~~~~ll~~~~~~-------~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~li~l~~~~l~~ 155 (544)
T TIGR01842 84 PIFAASFSATLRR-------GKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPI-YLLVCFLLHPWIGILALGGAVVLV 155 (544)
T ss_pred HHHHHHhcCcccC-------ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHH
Confidence 9999999999732 345678899999999998877 3444455444444 456789999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 041277 197 IPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGLKQGLAKGLAIG-SNGVT 275 (1133)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 275 (1133)
++..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|++..++..+...+.....+.... ..++.
T Consensus 156 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (544)
T TIGR01842 156 GLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFR 235 (544)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888889999999999999999999999999999999999999999988888887777776666 55566
Q ss_pred HHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcccccc
Q 041277 276 FGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEILE 355 (1133)
Q Consensus 276 ~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~ 355 (1133)
.+..++++++|++++.+|.+|+|.++++..+......|+..+...+..++++..+.+|+.++++.+++.+. . ...+
T Consensus 236 ~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~-~---~~~~ 311 (544)
T TIGR01842 236 IVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDP-A---MPLP 311 (544)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccC-C---CCCC
Confidence 66667788899999999999999999999998888999999999999999999999999999986544321 1 1112
Q ss_pred cccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHH
Q 041277 356 NVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWL 435 (1133)
Q Consensus 356 ~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~ 435 (1133)
...+.|+++||+|+|++. ++++|+|+||++++||+++|+||||||||||+++|+|+|+|++|+|.+||+++.+++.+++
T Consensus 312 ~~~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~ 390 (544)
T TIGR01842 312 EPEGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETF 390 (544)
T ss_pred CCCCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHH
Confidence 234579999999999753 2468999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHh
Q 041277 436 RSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAII 515 (1133)
Q Consensus 436 r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~ 515 (1133)
|++++||||+|++|++|++|||.++.++.++++++++++.++++++++++|+|+||.+|++|.+||||||||++||||++
T Consensus 391 ~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall 470 (544)
T TIGR01842 391 GKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALY 470 (544)
T ss_pred hhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999877778899999999999999999999999999999999999999999999999999
Q ss_pred hCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhcc
Q 041277 516 KAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 516 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
++|++||||||||+||+++++.+.+.+++.. +++|+|+||||++.++.||+|++|++|++++.|+|+|+++
T Consensus 471 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 471 GDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred cCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 9999999999999999999999999999875 6899999999999998899999999999999999999865
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-76 Score=784.41 Aligned_cols=508 Identities=22% Similarity=0.250 Sum_probs=427.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHH
Q 041277 89 LALGSWVACFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNAS 168 (1133)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~ 168 (1133)
+.++..++.+++.+.....+.+...++|.+++++++++|++|||+ + ++|+++||+++|++.+++.+...+..++..++
T Consensus 1007 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~-~-~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~ 1084 (1560)
T PTZ00243 1007 IVLLGTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDT-T-PLGRILNRFSRDIDILDNTLPMSYLYLLQCLF 1084 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccC-C-CccHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555556677778899999999999999999995 6 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHH
Q 041277 169 LFFGCYLVAFLMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFS 248 (1133)
Q Consensus 169 ~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~ 248 (1133)
.+++.++++++.+|.+.+++++++.+++.+..++.+..++..+......+.+.+++.|+++|+++||+|++|+.+.++|.
T Consensus 1085 ~~i~~li~~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~ 1164 (1560)
T PTZ00243 1085 SICSSILVTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEAL 1164 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHH
Confidence 99999999999998655554444445555666677777778887888889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH--HhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 249 SALQGSVQLGLKQGLAKGLAIG-SNGVTFGIWSFLCYYGSRMV--MYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFS 325 (1133)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v--~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (1133)
+..+...+...+......+... ..++..+...++.+++.... ..+.+++|.+..++.+......++..+...+..+.
T Consensus 1165 ~~~d~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le 1244 (1560)
T PTZ00243 1165 RRLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVE 1244 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988887776665544444443 44443333333333443332 34557888877777777778888889999999999
Q ss_pred HHHHHHHHHHHHhccCCCCCCCC------------------------Cccc-----ccccccccEEEEEEEEEcCCCCCC
Q 041277 326 EAMAAGERIMEMIKRVPKIDSDS------------------------MEGE-----ILENVLGEVEFKCVQFAYPSRPES 376 (1133)
Q Consensus 326 ~~~~a~~ri~~~l~~~~~~~~~~------------------------~~~~-----~~~~~~~~i~~~~v~~~y~~~~~~ 376 (1133)
.++.|++||.++++..|+++... .... +.....|.|+|+||+|+|++. .+
T Consensus 1245 ~~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~-~~ 1323 (1560)
T PTZ00243 1245 ADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREG-LP 1323 (1560)
T ss_pred HHHHHHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCC-CC
Confidence 99999999999997543321000 0000 011134789999999999754 34
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHH
Q 041277 377 IIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKEN 456 (1133)
Q Consensus 377 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~en 456 (1133)
++|+|+||+|++||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.+++|++||||||||.||+||||||
T Consensus 1324 ~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreN 1403 (1560)
T PTZ00243 1324 LVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQN 1403 (1560)
T ss_pred ceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhC-CCEEEEeCcccCCChHHH
Q 041277 457 ILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKA-PRILLLDEATSALDSESE 535 (1133)
Q Consensus 457 i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~-~~illlDE~ts~lD~~~~ 535 (1133)
|..+. +++++++++|++.+++++++.++|+|+||.+||+|.+|||||||||||||||+++ |+|||||||||+||++++
T Consensus 1404 Idp~~-~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te 1482 (1560)
T PTZ00243 1404 VDPFL-EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALD 1482 (1560)
T ss_pred hCccc-CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHH
Confidence 98753 6889999999999999999999999999999999999999999999999999996 899999999999999999
Q ss_pred HHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhccccchhhHHHHHhhc
Q 041277 536 RVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQT 600 (1133)
Q Consensus 536 ~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 600 (1133)
+.|++.|++..+++|+|+||||++++.+||+|+||++|+|+|.|+|+||++++++.|+++++.+.
T Consensus 1483 ~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~~ 1547 (1560)
T PTZ00243 1483 RQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEALG 1547 (1560)
T ss_pred HHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhC
Confidence 99999999988899999999999999999999999999999999999999756889999987653
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-76 Score=783.79 Aligned_cols=513 Identities=20% Similarity=0.274 Sum_probs=414.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHH
Q 041277 82 NTVHLLYLALGSWVACFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLP 161 (1133)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~ 161 (1133)
+...+++++++..++.+++.++..+.+.+...++|.+++++++++|++|||+ + ++|+++||+++|++.+++.+...+.
T Consensus 952 ~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~-~-~~G~ilnr~s~Di~~id~~l~~~~~ 1029 (1495)
T PLN03232 952 YIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHT-N-PTGRVINRFSKDIGDIDRNVANLMN 1029 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCc-C-CchHHHHHhHhhHHHHHHHHHHHHH
Confidence 4445566677778888899999999999999999999999999999999995 6 9999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchH
Q 041277 162 NFVMNASLFFGCYLVAFLMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGES 241 (1133)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~ 241 (1133)
.++..++.+++++++++++++...++++++..+++.+..++.+..++..+......+...+.+.|+++|+++||+|++|+
T Consensus 1030 ~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~ 1109 (1495)
T PLN03232 1030 MFMNQLWQLLSTFALIGTVSTISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYD 1109 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHH
Confidence 88888888888888877777643333322222223333444455566777777888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcc-----HHHHHHHHHHHHHHHHHHH
Q 041277 242 KTINEFSSALQGSVQLGLKQGLAKGLAIGSNGVTFGIWSFLCYYGSRMVMY-HGAQ-----GGTVFAVGASIAVGGLALG 315 (1133)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~-~~~t-----~g~~~~~~~~~~~~~~~~~ 315 (1133)
++.+++.+..+...+..........+... .+..++..++++.|...+.. +.+. .+.+..++.+......++.
T Consensus 1110 ~~~~~~~~~~~~~~~~~~~~~~~~~wl~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~ 1187 (1495)
T PLN03232 1110 RMAKINGKSMDNNIRFTLANTSSNRWLTI--RLETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLS 1187 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHH
Confidence 88877776665554443322222111111 11111222222233333332 3221 1122223344555566777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcccccc--cccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEE
Q 041277 316 AGLPNLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEILE--NVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVA 393 (1133)
Q Consensus 316 ~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~--~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ 393 (1133)
.+...+..+..+.+|++||.++++.+++.+.......+++ +..|.|+|+||+|+|+++ .+++|+|+||+|++||++|
T Consensus 1188 ~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~Gekva 1266 (1495)
T PLN03232 1188 GVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSPSEKVG 1266 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEcCCCEEE
Confidence 8888888999999999999999987665332111111111 235789999999999643 2469999999999999999
Q ss_pred EEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHH
Q 041277 394 LVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAA 473 (1133)
Q Consensus 394 ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~ 473 (1133)
||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|+||||||.||+|||||||.++. +++++++++|+
T Consensus 1267 IVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~-~~sdeei~~al 1345 (1495)
T PLN03232 1267 VVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS-EHNDADLWEAL 1345 (1495)
T ss_pred EECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC-CCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999875 68999999999
Q ss_pred HHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEE
Q 041277 474 KASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTII 553 (1133)
Q Consensus 474 ~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~ 553 (1133)
+.++++++++++|+|+||.+||+|.+||||||||+||||||+++|+|||||||||+||+++++.|++.|++..+++|+|+
T Consensus 1346 ~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~ 1425 (1495)
T PLN03232 1346 ERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLV 1425 (1495)
T ss_pred HHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888999999
Q ss_pred EecCcchhhcCCEEEEEeCCeEEeecCcchhccccchhhHHHHHhhc
Q 041277 554 IAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQT 600 (1133)
Q Consensus 554 itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 600 (1133)
||||++++.+||+|+||++|+|+|.|+|+||++++++.|+++++.+.
T Consensus 1426 IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~~~~~f~~l~~~~~ 1472 (1495)
T PLN03232 1426 IAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTG 1472 (1495)
T ss_pred EeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhC
Confidence 99999999999999999999999999999999855569999997654
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-77 Score=642.43 Aligned_cols=490 Identities=30% Similarity=0.427 Sum_probs=434.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHH
Q 041277 102 YCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLF-FGCYLVAFLM 180 (1133)
Q Consensus 102 ~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 180 (1133)
.++...++.....+--+.|.|++++++.|+-+ . .+|.+...+..-..-|+..+...+...+..++-+ ..+.++...+
T Consensus 4 ~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~-r-~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~ 81 (497)
T COG5265 4 RLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLE-R-RTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVY 81 (497)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHhcchhhhhh-c-ccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Confidence 34556777778888889999999999999985 6 8898877776666667666666666555555433 3344556678
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHH
Q 041277 181 LWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGLK 260 (1133)
Q Consensus 181 ~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 260 (1133)
+|+.+++.++++.+++++............++..++-++++....+++-+..+||.|+.|+.+..+|...++.+.+...|
T Consensus 82 ~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k 161 (497)
T COG5265 82 GWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIK 161 (497)
T ss_pred ccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHH
Confidence 99999999999998888887777777778888888999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041277 261 QGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEMIK 339 (1133)
Q Consensus 261 ~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~ 339 (1133)
.....++... ...+...........++..+..|.+|+|+++....++.+...|+..+......+.+++.-.++.+++++
T Consensus 162 ~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~ 241 (497)
T COG5265 162 VHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLD 241 (497)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhc
Confidence 7776666555 445555566667778888899999999999998899999999999999999999999999999999998
Q ss_pred cCCCCCCCCCcccccc-cccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCcc
Q 041277 340 RVPKIDSDSMEGEILE-NVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGG 418 (1133)
Q Consensus 340 ~~~~~~~~~~~~~~~~-~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G 418 (1133)
.+.+... .+..++.. ...|.+.|+||+|.|.. .+++|+++||++++|+++|+|||||+||||++++|.|||++++|
T Consensus 242 ~~~~v~d-~pda~~L~~~~~g~v~F~~V~F~y~~--~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG 318 (497)
T COG5265 242 VEAEVSD-APDAPPLWPVRLGAVAFINVSFAYDP--RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSG 318 (497)
T ss_pred cchhhcc-CCCCccccccccceEEEEEEEeeccc--cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCc
Confidence 7765432 22222222 34678999999999975 45799999999999999999999999999999999999999999
Q ss_pred EEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCC
Q 041277 419 EIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGV 498 (1133)
Q Consensus 419 ~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~ 498 (1133)
.|.+||+|+++...+.+|+.||.||||..||++|+..||.||+|.++++|+..+++.+++++|++.+|+||+|.|||+|-
T Consensus 319 ~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgergl 398 (497)
T COG5265 319 SITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGL 398 (497)
T ss_pred eEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchhee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEee
Q 041277 499 QMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMET 578 (1133)
Q Consensus 499 ~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~ 578 (1133)
.||||||||+||||+++++|+||+|||+|||||.+||+.|+..|++..+|+|.++|+||++++-+||+|+||++|+|+|.
T Consensus 399 klSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~er 478 (497)
T COG5265 399 KLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVER 478 (497)
T ss_pred eccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcchhccccchhhHHHHH
Q 041277 579 GSHDELIQAESGLYTSLVR 597 (1133)
Q Consensus 579 g~~~~l~~~~~~~~~~~~~ 597 (1133)
|+|+||++ .+|.|++||.
T Consensus 479 g~h~~ll~-~~g~ya~mw~ 496 (497)
T COG5265 479 GTHEELLA-AGGLYAEMWR 496 (497)
T ss_pred CcHHHHHH-cCChHHHHhc
Confidence 99999999 5999999985
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-75 Score=728.06 Aligned_cols=512 Identities=23% Similarity=0.326 Sum_probs=445.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhH
Q 041277 81 KNTVHLLYLALGSWVACFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKL 160 (1133)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~ 160 (1133)
.+...+.+++++..++..++.+.+...+.+.+.+|+.+++++++|.|++|||. + |+|+|+||+++|++.+++.+...+
T Consensus 859 ~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdt-T-P~GRILNRFSkD~~~vD~~Lp~~~ 936 (1381)
T KOG0054|consen 859 FYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDT-T-PTGRILNRFSKDIDTVDVLLPFTL 936 (1381)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCC-C-CccchhhhcccchHHHHHhhHHHH
Confidence 34555667777888888899999999999999999999999999999999995 6 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcch
Q 041277 161 PNFVMNASLFFGCYLVAFLMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGE 240 (1133)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e 240 (1133)
..++..++.+++.++++.+..|+..++++++..+++.+..+|.+..++..+-.....+...+++.|+++|+.|||+|+.|
T Consensus 937 ~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~ 1016 (1381)
T KOG0054|consen 937 EFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKE 1016 (1381)
T ss_pred HHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 241 SKTINEFSSALQGSVQLGLKQGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLP 319 (1133)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~ 319 (1133)
+++.+++.+..+...+...-..-..-+..- ..++..+....+..+.. +...+..++|.+-..+.|.+.+...+..+..
T Consensus 1017 ~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~v-l~~~~~~~~g~vGLslsyal~lt~~l~~~vR 1095 (1381)
T KOG0054|consen 1017 ERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAV-LLPSGLISPGLVGLSLSYALQLTGLLQWLVR 1095 (1381)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCCCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999888776654432222222221 33333322222211111 1112226678777777888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCCC-cccccc--cccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEc
Q 041277 320 NLKYFSEAMAAGERIMEMIKRVPKIDSDSM-EGEILE--NVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVG 396 (1133)
Q Consensus 320 ~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~-~~~~~~--~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG 396 (1133)
....+...++|+|||.++.+.++| .+... ...+++ +.+|+|+|+|++.+|.++ .++||+||||+|+|||++||||
T Consensus 1096 ~~~elEn~m~SVERv~eY~~~~~E-~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~-lp~VLk~is~~I~p~eKVGIVG 1173 (1381)
T KOG0054|consen 1096 QSSELENNMVSVERVLEYTDIPSE-APLEIEESRPPPSWPSKGEIEFEDLSLRYRPN-LPLVLKGISFTIKPGEKVGIVG 1173 (1381)
T ss_pred HHHHHHhcchhhhHHHHHhcCCCC-CCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCC-CcchhcCceEEEcCCceEEEeC
Confidence 999999999999999999997665 22221 121232 346999999999999754 3579999999999999999999
Q ss_pred CCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHh
Q 041277 397 GSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKAS 476 (1133)
Q Consensus 397 ~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~ 476 (1133)
++|||||||+++|.|+.+|.+|+|.|||.|+.++..++||++++++||||.||+||+|.|+. +..+++++++|+|++.+
T Consensus 1174 RTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLD-Pf~e~sD~~IW~ALe~~ 1252 (1381)
T KOG0054|consen 1174 RTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLD-PFDEYSDDEIWEALERC 1252 (1381)
T ss_pred CCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccC-cccccCHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999998 44578999999999999
Q ss_pred chHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEec
Q 041277 477 NAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAH 556 (1133)
Q Consensus 477 ~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH 556 (1133)
++.+++.++|.|+|+.|.|+|.|+|-||||.+||||||+++++||+|||||+++|++|...||+.|++..+++|||.|+|
T Consensus 1253 ~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAH 1332 (1381)
T KOG0054|consen 1253 QLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAH 1332 (1381)
T ss_pred ChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhcCCEEEEEeCCeEEeecCcchhccccchhhHHHHHh
Q 041277 557 RLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRL 598 (1133)
Q Consensus 557 ~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 598 (1133)
|++++.+||||+|||+|+|+|.|+|++|++++++.|+++...
T Consensus 1333 Rl~TVmd~DrVlVld~G~v~EfdsP~~Ll~~~~S~f~~~l~~ 1374 (1381)
T KOG0054|consen 1333 RLNTVMDSDRVLVLDAGRVVEFDSPAELLSDKDSLFSSLLKE 1374 (1381)
T ss_pred ccchhhhcCeEEEeeCCeEeecCChHHHHhCCcchHHHHHHH
Confidence 999999999999999999999999999998778888765543
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-73 Score=689.59 Aligned_cols=535 Identities=16% Similarity=0.168 Sum_probs=441.0
Q ss_pred cchHHHHHhhhc-hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHH
Q 041277 18 NGSFRSIFMHAD-GVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVA 96 (1133)
Q Consensus 18 ~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (1133)
+..+++++++++ ++ +..++++++++++.++...+.+++++.+++..... . . .. ...++++.++.+++
T Consensus 2 ~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~---~--~--~~----~~~~~~~~~~~~~~ 69 (555)
T TIGR01194 2 KAAIGEILALLRSPF-PAITAFSIALGLAGGLAIIALLASINNAIHEENFL---G--Q--GS----LFSFGGLCLLALLF 69 (555)
T ss_pred CchHHHHHHHHhhcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc---c--c--hH----HHHHHHHHHHHHHH
Confidence 345677888776 44 44455666666666666666667778777632110 0 0 01 11233345566778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 041277 97 CFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLV 176 (1133)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 176 (1133)
.++..++.++.+.++..++|.++|+|++++|+++|++ . ++|++++|+++|++.+++++.. ++.++..++.+++.+++
T Consensus 70 ~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~-~-~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~ 146 (555)
T TIGR01194 70 RIGADIFPAYAGMHIIANLRIALCEKILGAPIEEIDR-R-GAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAY 146 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHh-c-CcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999996 6 9999999999999999998864 67778888888888999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchH--HHHHHHHHHHHHH
Q 041277 177 AFLMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGES--KTINEFSSALQGS 254 (1133)
Q Consensus 177 ~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~--~~~~~~~~~~~~~ 254 (1133)
+++++|.+++++++++|+.+++..++.++.++..++.++..++.++.+.|.+.|+++||+|+.++ .+.+++.+..++.
T Consensus 147 l~~~~~~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~ 226 (555)
T TIGR01194 147 LAYLSVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNI 226 (555)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHH
Confidence 99999999999998889888888888888888888889999999999999999999999999954 5678888888888
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 255 VQLGLKQGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGER 333 (1133)
Q Consensus 255 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~r 333 (1133)
++...+.........+ ..++..+...+.+++|++. |.+|+|.++++..+......|+..+...+..++++.+|++|
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~r 303 (555)
T TIGR01194 227 ADLHIIEILIFIAAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQR 303 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777666555444434 3344444444455555543 78999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCCCCC--CCc-cc----ccccccccEEEEEEEEEcCCCC--CCccccceeEEeeCCCEEEEEcCCCCcHHH
Q 041277 334 IMEMIKRVPKIDSD--SME-GE----ILENVLGEVEFKCVQFAYPSRP--ESIIFKDFCLTIPAGKTVALVGGSGSGKST 404 (1133)
Q Consensus 334 i~~~l~~~~~~~~~--~~~-~~----~~~~~~~~i~~~~v~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~sGsGKST 404 (1133)
+.++++.+++.+.. ... .. .+....+.|+++||+|+|++.+ ++++|+|+||++++||+++|+|||||||||
T Consensus 304 i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKST 383 (555)
T TIGR01194 304 LADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKST 383 (555)
T ss_pred HHHHHhhhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHH
Confidence 99998632111000 000 00 1112246799999999997532 235999999999999999999999999999
Q ss_pred HHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHh
Q 041277 405 VIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQ 484 (1133)
Q Consensus 405 ll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~ 484 (1133)
|+++|+|+|+|++|+|.+||.++++++.+++|++++||+|||++|++|+++|+ .++.++++++++++.++++++++.
T Consensus 384 l~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~---~~~~~~~~~~~~~~~~~l~~~~~~ 460 (555)
T TIGR01194 384 LAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE---GEHASLDNAQQYLQRLEIADKVKI 460 (555)
T ss_pred HHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc---ccchhHHHHHHHHHHcCCchhhcc
Confidence 99999999999999999999999999999999999999999999999999995 356788899999999999999999
Q ss_pred CCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHH-HH-hCCCeEEEEecCcchhh
Q 041277 485 LPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALD-KA-VVGRTTIIIAHRLSTIR 562 (1133)
Q Consensus 485 l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~-~~-~~~~t~i~itH~~~~~~ 562 (1133)
+|+||||. .+|||||||||+||||++++|+|+|||||||+||+++++.+++.+. .. .+++|+|+||||+++++
T Consensus 461 lp~g~~t~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~ 535 (555)
T TIGR01194 461 EDGGFSTT-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFE 535 (555)
T ss_pred cccccCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH
Confidence 99999994 6899999999999999999999999999999999999999988764 33 46899999999999999
Q ss_pred cCCEEEEEeCCeEEee
Q 041277 563 NADVIAVVQDGQVMET 578 (1133)
Q Consensus 563 ~~d~i~~l~~G~i~~~ 578 (1133)
.||+|++|++|+++|.
T Consensus 536 ~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 536 LADQIIKLAAGCIVKD 551 (555)
T ss_pred hCCEEEEEECCEEEEe
Confidence 9999999999999864
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-72 Score=740.58 Aligned_cols=501 Identities=20% Similarity=0.262 Sum_probs=417.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHH
Q 041277 91 LGSWVACFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLF 170 (1133)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~ 170 (1133)
++..++.+++.+++.+.+.+...++|.++++++++.|++||++ . ++|+++||+++|++.+++.+...+..++..++.+
T Consensus 936 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~-~-~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~ 1013 (1490)
T TIGR01271 936 DSVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNT-M-KAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIV 1013 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-C-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566778888889999999999999999999999999995 6 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHH
Q 041277 171 FGCYLVAFLMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSA 250 (1133)
Q Consensus 171 ~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~ 250 (1133)
++.++++++++|.+++++++++++++.+..++.+..++..+......+.+.+++.|+++|+.+||+|++|+.+.+++.+.
T Consensus 1014 i~~l~~i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~ 1093 (1490)
T TIGR01271 1014 LGAIFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKA 1093 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHH
Confidence 99999999999988776665555666666777777777777788888999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHH--HHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 251 LQGSVQLGLKQGLAKGLAIG-SNGVTFGI--WSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEA 327 (1133)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (1133)
.+...+..........+... ..++..+. .+++++++. ...+.|.+..++.+...+..++..+...+..+..+
T Consensus 1094 ~~~~~~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l~~~~-----~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~ 1168 (1490)
T TIGR01271 1094 LNLHTANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIAIGT-----NQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGL 1168 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88654443332222222222 22211111 111122222 22344444444445555566677777788889999
Q ss_pred HHHHHHHHHHhccCCCCCCCCCc--------------ccccc--cccccEEEEEEEEEcCCCCCCccccceeEEeeCCCE
Q 041277 328 MAAGERIMEMIKRVPKIDSDSME--------------GEILE--NVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKT 391 (1133)
Q Consensus 328 ~~a~~ri~~~l~~~~~~~~~~~~--------------~~~~~--~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~ 391 (1133)
+.|++||.++++.+++.+..... ...++ +..|.|+|+||+|+|++. .+++|+|+||+|++||+
T Consensus 1169 ~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~is~~I~~Gek 1247 (1490)
T TIGR01271 1169 MRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA-GRAVLQDLSFSVEGGQR 1247 (1490)
T ss_pred HHHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC-CcceeeccEEEEcCCCE
Confidence 99999999999876553211100 00011 234789999999999753 35799999999999999
Q ss_pred EEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHH
Q 041277 392 VALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIE 471 (1133)
Q Consensus 392 ~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~ 471 (1133)
+||||+||||||||+++|+|+++ ++|+|+|||+|+++++.+++|++|+||||||.||+|||||||.... +.+++++++
T Consensus 1248 vaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~-~~tdeei~~ 1325 (1490)
T TIGR01271 1248 VGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYE-QWSDEEIWK 1325 (1490)
T ss_pred EEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCccc-CCCHHHHHH
Confidence 99999999999999999999997 7999999999999999999999999999999999999999998643 578999999
Q ss_pred HHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeE
Q 041277 472 AAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTT 551 (1133)
Q Consensus 472 ~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~ 551 (1133)
+++.+++++++.++|+|+||.|||+|.+||||||||+||||||+++|+|||||||||+||+++++.|++.|++..+++|+
T Consensus 1326 aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~Tv 1405 (1490)
T TIGR01271 1326 VAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTV 1405 (1490)
T ss_pred HHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998899999
Q ss_pred EEEecCcchhhcCCEEEEEeCCeEEeecCcchhccccchhhHHHHHhhcCC
Q 041277 552 IIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQTTT 602 (1133)
Q Consensus 552 i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~ 602 (1133)
|+||||++++.+||+|+||++|+|+|.|+|++|++ +++.|+++++.+...
T Consensus 1406 I~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~-~~~~f~~l~~~~~~~ 1455 (1490)
T TIGR01271 1406 ILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLN-ETSLFKQAMSAADRL 1455 (1490)
T ss_pred EEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHc-CCcHHHHHHHHhChh
Confidence 99999999999999999999999999999999997 688999998876543
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-70 Score=599.91 Aligned_cols=534 Identities=24% Similarity=0.316 Sum_probs=454.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 35 LMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACFLEGYCWTRTGERQATR 114 (1133)
Q Consensus 35 ~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (1133)
++.++++..++ .+.....|+++-++-|.+....+ ...+....++.+++.+...++.+++.....+++.++..+
T Consensus 25 ~~~v~lfS~~I-NiL~L~~~lyMLQVyDRVL~S~s------~~TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig~~lD~~ 97 (580)
T COG4618 25 FIGVGLFSAVI-NLLALTGPLYMLQVYDRVLPSRS------VPTLVMLTVLALGLYAFQGLLDAIRSRVLVRIGERLDRQ 97 (580)
T ss_pred HHHHHHHHHHH-HHHHHhhhHHHHHHHhhhccCCC------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444443 33344445566678887654321 122333334445556667788899999999999999999
Q ss_pred HHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 041277 115 MRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLWRLAIVGFPFVVL 194 (1133)
Q Consensus 115 lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~~ 194 (1133)
+...+|....+.+..-- ..|+=..- -+|.++++.+++..-+..+.+.-.+.+.+.++|.++++++++.++...+
T Consensus 98 L~~~v~~a~~~~~l~~~-----~~g~~~Q~-LrDL~qvR~Fltg~g~~A~fDaPW~P~yl~v~fl~Hp~lG~~a~~ga~i 171 (580)
T COG4618 98 LNGPVFAASFSAPLLRR-----GSGDGLQP-LRDLDQVRQFLTGTGLTAFFDAPWMPLYLAVIFLFHPWLGLIALAGAII 171 (580)
T ss_pred hccHHHHHHHhhHHhhc-----CCCccccc-hhhHHHHHHHHcCCCcchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999987766532 23332233 3699999999987554444444444556788899999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 041277 195 LVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGLKQGLAKGLAIG-SNG 273 (1133)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 273 (1133)
++.+.++-.+..++..++..+...+.+..+.-+..|.++|++.|......++|.+....+.....+..-..+.... +..
T Consensus 172 Lv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~ 251 (580)
T COG4618 172 LVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRA 251 (580)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 8888888888888888888899999999999999999999999999999999999999998888877777776666 667
Q ss_pred HHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcccc
Q 041277 274 VTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEI 353 (1133)
Q Consensus 274 ~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~ 353 (1133)
+-......++..|+|++++|++|+|.+++....+.....|+-.....+.++..++.|.+|+.++++..|..++ ..+
T Consensus 252 ~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~----~m~ 327 (580)
T COG4618 252 LRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAE----RMP 327 (580)
T ss_pred HHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccC----CCC
Confidence 7777788889999999999999999999888777788889999999999999999999999999988765332 234
Q ss_pred cccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHH
Q 041277 354 LENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLK 433 (1133)
Q Consensus 354 ~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~ 433 (1133)
.+..++.+.++++++.=|+. ++++|+|+||++++||.+|||||||||||||.++|.|.++|.+|.|++||-|+++++.+
T Consensus 328 LP~P~g~L~Ve~l~~~PPg~-~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e 406 (580)
T COG4618 328 LPAPQGALSVERLTAAPPGQ-KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDRE 406 (580)
T ss_pred CCCCCceeeEeeeeecCCCC-CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHH
Confidence 45667899999999976544 57899999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHH
Q 041277 434 WLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARA 513 (1133)
Q Consensus 434 ~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa 513 (1133)
++-++|||.|||..||+|||.|||+--.++.+.+++.+|++.++.||.|.++|+||||.||+.|..|||||||||+||||
T Consensus 407 ~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARA 486 (580)
T COG4618 407 QLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARA 486 (580)
T ss_pred HhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHH
Confidence 99999999999999999999999985556788999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhcc
Q 041277 514 IIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 514 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
+|.||.+++||||-|+||.+.|..+.++|...+ +|.|+|+||||++.+..+|+|++|++|++...|+.+|+++
T Consensus 487 lYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa 560 (580)
T COG4618 487 LYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLA 560 (580)
T ss_pred HcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHH
Confidence 999999999999999999999999999998875 6999999999999999999999999999999999999876
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-67 Score=638.22 Aligned_cols=508 Identities=20% Similarity=0.233 Sum_probs=392.7
Q ss_pred HHHHHHHHHHHhHHHH-HHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 37 VLGYIGAIGDGFSTPL-VLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACFLEGYCWTRTGERQATRM 115 (1133)
Q Consensus 37 ~~~~~~~~~~~~~~p~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 115 (1133)
+++++++++..++... .+++.+.++|..... . ..+. .++++.++..++.+++.++..+.+.++..++
T Consensus 16 ~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~~----~----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (547)
T PRK10522 16 ISVMALSLASAALGIGLIAFINQRLIETADTS----L----LVLP----EFLGLLLLLMAVTLGSQLALTTLGHHFVYRL 83 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccc----c----hHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444454444444443 345667788854211 0 1111 1112222334567788888889999999999
Q ss_pred HHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 041277 116 RARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLWRLAIVGFPFVVLL 195 (1133)
Q Consensus 116 r~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~ 195 (1133)
|.+++++++++|+++|++ + ++|++++|+++|++.+...+. .++.++.+++.++++++++++++|.+++++++++|+.
T Consensus 84 R~~l~~~ll~~~~~~~~~-~-~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~~~ 160 (547)
T PRK10522 84 RSEFIKRILDTHVERIEQ-L-GSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGSAAYLAWLSPKMLLVTAIWMAVT 160 (547)
T ss_pred HHHHHHHHHhCCHHHHhc-c-CccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 999999999999999996 6 899999999999999998765 4677888888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q 041277 196 VIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGE---SKTINEFSSALQGSVQLGLKQGLAKGLAIG-S 271 (1133)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 271 (1133)
+++..++.++.++..++.++..+++++.+.|.++|+++++ ++.+ +.+.++|++..++..+...+.......... .
T Consensus 161 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (547)
T PRK10522 161 IWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQEYRHHIIRADTFHLSAVNWS 239 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 8888899999999888999999999999999999999996 4443 456788888887777666655544433322 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcc
Q 041277 272 NGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEMIKRVPKIDSDSMEG 351 (1133)
Q Consensus 272 ~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~ 351 (1133)
..+......+.+++++.. ..+ +.+.+..+.++......|+..+...+..++++..+.+|+.++++.+++.+.. ..
T Consensus 240 ~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~~--~~ 314 (547)
T PRK10522 240 NIMMLGAIGLVFYMANSL-GWA--DTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEFP--RP 314 (547)
T ss_pred HHHHHHHHHHHHHHHHHh-hcC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc--cc
Confidence 222222222233333322 112 3333333333444455788888889999999999999999997654322111 11
Q ss_pred cccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCC
Q 041277 352 EILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQ 431 (1133)
Q Consensus 352 ~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~ 431 (1133)
. +.+..+.|+++||+|+|+++ +++|+|+||++++||+++|+||||||||||+++|+|+|+|++|+|.+||+++++++
T Consensus 315 ~-~~~~~~~i~~~~v~f~y~~~--~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~ 391 (547)
T PRK10522 315 Q-AFPDWQTLELRNVTFAYQDN--GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQ 391 (547)
T ss_pred c-ccCcCceEEEEEEEEEeCCC--CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCC
Confidence 1 11113579999999999743 35899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHH
Q 041277 432 LKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIA 511 (1133)
Q Consensus 432 ~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iA 511 (1133)
.+++|++|+||+|||.+|++|++|| + ++.+++++.++++..++.+++.. |+|. .+|.+||||||||++||
T Consensus 392 ~~~~~~~i~~v~q~~~lf~~ti~~n---~-~~~~~~~~~~~~~~~~l~~~~~~-~~~~-----~~G~~LSgGq~qRl~lA 461 (547)
T PRK10522 392 PEDYRKLFSAVFTDFHLFDQLLGPE---G-KPANPALVEKWLERLKMAHKLEL-EDGR-----ISNLKLSKGQKKRLALL 461 (547)
T ss_pred HHHHhhheEEEecChhHHHHhhccc---c-CchHHHHHHHHHHHcCCchhhhc-cccC-----CCCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999 3 34566677777777666555432 3331 14789999999999999
Q ss_pred HHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhcCCEEEEEeCCeEEee
Q 041277 512 RAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRNADVIAVVQDGQVMET 578 (1133)
Q Consensus 512 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~ 578 (1133)
||++++|++||||||||+||+++++.+.+.+.+.. +++|+|+||||+++++.||+|++|++|+++|.
T Consensus 462 Ral~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 462 LALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999987653 48999999999999999999999999999986
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-65 Score=617.39 Aligned_cols=460 Identities=25% Similarity=0.409 Sum_probs=413.0
Q ss_pred HHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 665 FRRLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINIIQHYNF 744 (1133)
Q Consensus 665 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (1133)
+.+++....++|+.+.-.++.+++.+++..+.|++...++|....... .+......+.+++.+++..++.+++.+++
T Consensus 142 ~~~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~---~~tL~vl~ig~~~~~l~~~~l~~lr~~~~ 218 (709)
T COG2274 142 LSWFIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDAS---RSTLTVLAIGLLLAALFEALLRLLRTYLI 218 (709)
T ss_pred hHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556667666666666677777777777777777776543221 22333445556667778889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 041277 745 AYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWRL 824 (1133)
Q Consensus 745 ~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~w~l 824 (1133)
.+.+.++..++-.++|+|++++|++||. ++++|++++|+ +|.+.|++++.......+..+...++.+++|++++|+|
T Consensus 219 ~~~~~rld~~l~~~~~~hll~Lpl~~f~--~r~~Ge~~sR~-~el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L 295 (709)
T COG2274 219 AHLGKRLDLELSGRFFRHLLRLPLSYFE--KRSVGEIISRV-RELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKL 295 (709)
T ss_pred HHHHHHHhHHHHHHHHHHHHcCcHHHcc--CCChhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998 57999999999 59999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHHHHHH
Q 041277 825 ALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSWY 904 (1133)
Q Consensus 825 ~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~ 904 (1133)
++++++.+|+.++...+..+.+++..++..+..+..+++..|+++|++|||+.+.|.++..+|++...++.+..++....
T Consensus 296 ~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~ 375 (709)
T COG2274 296 TLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKL 375 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCC
Q 041277 905 AGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRYTK 984 (1133)
Q Consensus 905 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~ 984 (1133)
......+..++..+..++++|+|++++.+|.+|.|.++++.++...+..|+..+.+++.+++....+.+|+.++++.+++
T Consensus 376 ~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E 455 (709)
T COG2274 376 ALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPE 455 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred CCCCCCCCCCCCCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEEC
Q 041277 985 IEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKID 1064 (1133)
Q Consensus 985 ~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~Id 1064 (1133)
.+.+.. ....+...|+|+|+||+|+|+.+ ++++|+|+||+|+|||+|||||+||||||||+++|.|+|+|++|+|++|
T Consensus 456 ~~~~~~-~~~~~~~~g~I~~~nvsf~y~~~-~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~d 533 (709)
T COG2274 456 QEGDKT-LIHLPKLQGEIEFENVSFRYGPD-DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLD 533 (709)
T ss_pred cccccc-cccccccCceEEEEEEEEEeCCC-CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Confidence 432221 12344567999999999999754 3479999999999999999999999999999999999999999999999
Q ss_pred CcccCCCChhHHhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1065 DRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1065 G~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
|+|+.++++++||++|++||||++||+|||||||++|+| ++++||+++||+.|++||||+++|.||||
T Consensus 534 g~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p-~~~~e~i~~A~~~ag~~~fI~~lP~gy~t 601 (709)
T COG2274 534 GVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNP-EATDEEIIEAAQLAGAHEFIENLPMGYDT 601 (709)
T ss_pred CEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCC-CCCHHHHHHHHHHhCcHHHHHhccccccc
Confidence 999999999999999999999999999999999999988 57899999999999999999999999998
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-65 Score=625.98 Aligned_cols=531 Identities=14% Similarity=0.119 Sum_probs=433.7
Q ss_pred chHHHHHhhhchhhH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHH
Q 041277 19 GSFRSIFMHADGVDM----FLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSW 94 (1133)
Q Consensus 19 ~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (1133)
..++++++++.|+.+ ..+++.+++.++..++....|++.+.++|.+... +...+...+..+.++++...++..
T Consensus 77 ~~~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~---~~~~f~~~l~~~~l~~~~~~~~~~ 153 (659)
T TIGR00954 77 GKLDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRR---SPRNFAWILFKWFLIAPPASFINS 153 (659)
T ss_pred HHHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667888766543 2455666666667777778889999999987543 211122222233333444555566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 041277 95 VACFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCY 174 (1133)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~ 174 (1133)
+..++..++......++..++|.+++++....++.+||+ ++|++.+|+++|++.+.+.+...+..++..++.+++++
T Consensus 154 ~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~---~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~ 230 (659)
T TIGR00954 154 AIKYLLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS---RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYS 230 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC---CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777788888999999999999988999999984 68999999999999999999999999999999998888
Q ss_pred HHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHH
Q 041277 175 LVAFL-MLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQG 253 (1133)
Q Consensus 175 ~~~~~-~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~ 253 (1133)
+.++. ++|.+++++++.+|+.+++..++.+++.+..++.++..++..+.+.|.++|+++||+|+.|+.+.+++++..++
T Consensus 231 ~~L~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~ 310 (659)
T TIGR00954 231 FKLLTALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYR 310 (659)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHH
Confidence 87776 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHH--HHHHHHHHHHHHHH-h----cCccHHHHHH-HHHH---HHHHHHHHHHHHHHH
Q 041277 254 SVQLGLKQGLAKGLAIG-SNGVTFG--IWSFLCYYGSRMVM-Y----HGAQGGTVFA-VGAS---IAVGGLALGAGLPNL 321 (1133)
Q Consensus 254 ~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~g~~~v~-~----~~~t~g~~~~-~~~~---~~~~~~~~~~~~~~~ 321 (1133)
..+...+..+..+...+ ..++... ..++.++.|...+. . |.+|.|.+++ ++.+ +.....|+..+...+
T Consensus 311 l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~ 390 (659)
T TIGR00954 311 LVEHLNLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAG 390 (659)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888887776 5554432 22222333342332 2 6899988766 4433 445577888999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCC--------C-Ccc-------------cccccccccEEEEEEEEEcCCCCCCccc
Q 041277 322 KYFSEAMAAGERIMEMIKRVPKIDSD--------S-MEG-------------EILENVLGEVEFKCVQFAYPSRPESIIF 379 (1133)
Q Consensus 322 ~~~~~~~~a~~ri~~~l~~~~~~~~~--------~-~~~-------------~~~~~~~~~i~~~~v~~~y~~~~~~~~l 379 (1133)
..++++.++.+|+.++++.+++.+.. . .+. .......+.|+++||+|+|+++ +++|
T Consensus 391 ~~i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~--~~il 468 (659)
T TIGR00954 391 RDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG--DVLI 468 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC--Ceee
Confidence 99999999999999999764332100 0 000 0011123569999999999743 3599
Q ss_pred cceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhc
Q 041277 380 KDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILF 459 (1133)
Q Consensus 380 ~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~ 459 (1133)
+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+++ |++++||||+|.+|++|++|||.+
T Consensus 469 ~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~ 537 (659)
T TIGR00954 469 ESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIY 537 (659)
T ss_pred ecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhc
Confidence 999999999999999999999999999999999999999999864 457999999999999999999998
Q ss_pred CC-------CCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCCh
Q 041277 460 GK-------EDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDS 532 (1133)
Q Consensus 460 ~~-------~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~ 532 (1133)
+. +..+++++.++++.+++++++++ |.|+||..+ .+.+||||||||++||||++++|+++|||||||+||+
T Consensus 538 ~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~ 615 (659)
T TIGR00954 538 PDSSEDMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSV 615 (659)
T ss_pred CCChhhhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCH
Confidence 74 33567889999999999999887 999999986 5679999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeC
Q 041277 533 ESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQD 572 (1133)
Q Consensus 533 ~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~ 572 (1133)
++++.+.+.+++. |+|+|+||||++.++.||+|++|+.
T Consensus 616 ~~~~~l~~~l~~~--~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 616 DVEGYMYRLCREF--GITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred HHHHHHHHHHHHc--CCEEEEEeCchHHHHhCCEEEEEeC
Confidence 9999999998774 8999999999999999999999973
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-62 Score=594.05 Aligned_cols=456 Identities=19% Similarity=0.246 Sum_probs=389.6
Q ss_pred HHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHH--HHHHHHHHHHHHHHHHHHHHHH
Q 041277 667 RLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIY--AFCFLGLAVFTLVINIIQHYNF 744 (1133)
Q Consensus 667 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 744 (1133)
+++++.+++++.+.+.++++++..++....|++++.+++....... ...++ ...++++.++..++.++..++.
T Consensus 3 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (529)
T TIGR02868 3 RILPLLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPP-----VLYLSVAAVAVRAFGIGRAVFRYLERLVG 77 (529)
T ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777777777788888888888888888876432111 11111 1112234455677788888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 041277 745 AYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWRL 824 (1133)
Q Consensus 745 ~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~w~l 824 (1133)
.+.+.++..++|.++|+|++++|.+||+ ++++|++++|+++|++.+++.+...+..++..++.+++.++++++++|.+
T Consensus 78 ~~~~~~~~~~lr~~~~~~ll~~~~~~~~--~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 155 (529)
T TIGR02868 78 HDAALRSLGRLRVRVYDRLARLALAGRR--RFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPA 155 (529)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCccccc--cCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999999999999998 57999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHHHHH
Q 041277 825 ALVMIAVQPLVIICF-YARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSW 903 (1133)
Q Consensus 825 ~lv~l~~~pl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~ 903 (1133)
++++++.+|++.++. ++..+..++..++.++..++..+++.|.++|+++||+|+.|+++.++|++..++..+...+..+
T Consensus 156 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (529)
T TIGR02868 156 ALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAAR 235 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988878776555 4444444555667777889999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCC
Q 041277 904 YAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRYT 983 (1133)
Q Consensus 904 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~ 983 (1133)
..+...++...+..+..++++++|++++..|.++.|.+++++.+......|+..+......+.++..+.+|+.++++.++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~ 315 (529)
T TIGR02868 236 ATGLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKG 315 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 88888888888888888889999999999999999999999999999999999999999999999999999999998655
Q ss_pred CCCCCCCC-CCCCCCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEE
Q 041277 984 KIEPEDPE-GHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVK 1062 (1133)
Q Consensus 984 ~~~~~~~~-~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~ 1062 (1133)
+.+..+.+ ....++..++|+|+||+|+|+++ .++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|+
T Consensus 316 ~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~ 393 (529)
T TIGR02868 316 PRPEGVVPAAGALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVT 393 (529)
T ss_pred CcCCCCCCCCcccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence 42211111 11111234689999999999743 3599999999999999999999999999999999999999999999
Q ss_pred ECCcccCCCChhHHhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1063 IDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1063 IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
+||+|++++ .+++|++|++|||||+||+|||||||++|+| +++|||+++||+.|+++|||++||+||||
T Consensus 394 i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~-~~~~e~i~~al~~a~l~~~i~~lp~GldT 462 (529)
T TIGR02868 394 LDGVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRP-DATDEELWAALERVGLADWLRSLPDGLDT 462 (529)
T ss_pred ECCEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCC-CCCHHHHHHHHHHcCCHHHHHhCcccccc
Confidence 999999999 9999999999999999999999999999976 57999999999999999999999999998
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-61 Score=603.14 Aligned_cols=463 Identities=29% Similarity=0.447 Sum_probs=409.8
Q ss_pred hHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 041277 663 PSFRRLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINIIQHY 742 (1133)
Q Consensus 663 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (1133)
..+++++++.+++++.+...+++.++.+++....|++.+.+++........ .........++++.++..++.+++.+
T Consensus 147 ~~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~ 223 (711)
T TIGR00958 147 DLLFRLLGLSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGP---PALASAIFFMCLLSIASSVSAGLRGG 223 (711)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888888888888888989999999998876432111 11122233444555666778888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhH
Q 041277 743 NFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAW 822 (1133)
Q Consensus 743 ~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~w 822 (1133)
++.+.+.++..++|.++|++++++|++||+ ++++|++++|+++|++.+++.+...+..++..++.+++.+++++.++|
T Consensus 224 ~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~--~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~ 301 (711)
T TIGR00958 224 SFNYTMARINLRIREDLFRSLLRQDLGFFD--ENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSP 301 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHc--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999999999999999998 579999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHHHH
Q 041277 823 RLALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQS 902 (1133)
Q Consensus 823 ~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~ 902 (1133)
++++++++..|+.++...+..++.++..++.++..++.++.+.|+++|+++||+|+.|+++.++|.+..++..+...+..
T Consensus 302 ~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 381 (711)
T TIGR00958 302 RLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKA 381 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888888888888888999999999999999999999999999999999999999999988888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccC
Q 041277 903 WYAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRY 982 (1133)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~ 982 (1133)
...+....+...+..+..++++++|++++..|.++.|++++++.+......++..+.....+++++..+.+|++++++.+
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~ 461 (711)
T TIGR00958 382 LAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRK 461 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 77776666667777777888889999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCCCCCCCCCCCCCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEE
Q 041277 983 TKIEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVK 1062 (1133)
Q Consensus 983 ~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~ 1062 (1133)
++.++.. ...+.+..|.|+|+||+|+||++++.++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|+
T Consensus 462 ~~~~~~~--~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~ 539 (711)
T TIGR00958 462 PNIPLTG--TLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVL 539 (711)
T ss_pred CCCCCCC--CCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEE
Confidence 5432211 11222345789999999999876666899999999999999999999999999999999999999999999
Q ss_pred ECCcccCCCChhHHhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1063 IDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1063 IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
+||+|+++++.+++|++|++|||||+||+|||||||+||.| +.+|||+++||+.|++++||++||+||||
T Consensus 540 idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~-~~~~e~i~~al~~a~l~~~i~~lp~GldT 609 (711)
T TIGR00958 540 LDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLT-DTPDEEIMAAAKAANAHDFIMEFPNGYDT 609 (711)
T ss_pred ECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCC-CCCHHHHHHHHHHcCCHHHHHhCCCccCC
Confidence 99999999999999999999999999999999999999976 57899999999999999999999999997
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-60 Score=582.70 Aligned_cols=454 Identities=32% Similarity=0.489 Sum_probs=400.4
Q ss_pred HHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 665 FRRLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINIIQHYNF 744 (1133)
Q Consensus 665 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (1133)
+++++.+.+ ++ .+.++.++.++..++....+++++..++... .+ ......+...++++.++..++.++..+..
T Consensus 4 ~~~l~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 76 (567)
T COG1132 4 LRRLLKYLK-YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALL-AD----LGELLELLLLLLLLALLGGVLRALQSYLG 76 (567)
T ss_pred HHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444 66 7777777777778888888888888887665 11 11222334445555556777888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 041277 745 AYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWRL 824 (1133)
Q Consensus 745 ~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~w~l 824 (1133)
.+.+.+...++|.+++++++++|++||+ ++++|++++|+++|++.++..+.+....+...++.+++.+++++.++|++
T Consensus 77 ~~~~~~~~~~lr~~~~~~l~~~~~~~~~--~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 154 (567)
T COG1132 77 SRLGQKIVADLRRDLFEKLLRLPLSFFD--KAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRL 154 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHhC--cCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 8888999999999999999999999999 57899999999999999999999987777778889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHHHHHH
Q 041277 825 ALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSWY 904 (1133)
Q Consensus 825 ~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~ 904 (1133)
++++++..|++.+...+..++.++..+..++..++.++.+.|+++|+++||+|+.++...+++.+..+...+...+..+.
T Consensus 155 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (567)
T COG1132 155 ALILLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRL 234 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888887778888899999999999999999999999999999999999999999998888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCC
Q 041277 905 AGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRYTK 984 (1133)
Q Consensus 905 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~ 984 (1133)
.+...++...+..+...+++++|+.++..+.++.|.+.+++.+......|+..+......++.+..+++|++++++.+++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~ 314 (567)
T COG1132 235 EALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPE 314 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 88888899999999999999999999999999999999999999999999999999999999999999999999997655
Q ss_pred CCCCCCCCCCCCCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEEC
Q 041277 985 IEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKID 1064 (1133)
Q Consensus 985 ~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~Id 1064 (1133)
+++.+.. .....|+|+|+||+|+|++ +.++|+|+||+|+|||++||||||||||||++++|+|||||++|+|+||
T Consensus 315 ~~~~~~~---~~~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~id 389 (567)
T COG1132 315 VEDPPDP---LKDTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILID 389 (567)
T ss_pred ccCCCCC---CCCCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEEC
Confidence 3322211 2234588999999999973 4469999999999999999999999999999999999999999999999
Q ss_pred CcccCCCChhHHhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1065 DRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1065 G~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
|+||+++++++||++|++|||||+||+|||+|||+||+|+ +||||+++|||.|++||||+++|+||||
T Consensus 390 g~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~-at~eei~~a~k~a~~~d~I~~lp~g~dt 457 (567)
T COG1132 390 GIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPD-ATDEEIEEALKLANAHEFIANLPDGYDT 457 (567)
T ss_pred CEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCC-CCHHHHHHHHHHhChHHHHHhCcccccc
Confidence 9999999999999999999999999999999999999875 8999999999999999999999999998
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-60 Score=584.80 Aligned_cols=460 Identities=18% Similarity=0.268 Sum_probs=388.1
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 664 SFRRLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINIIQHYN 743 (1133)
Q Consensus 664 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (1133)
.+++++++.+++++.+.++++++++..++.+..|++++.+++.....+.+ ......+...++++.++..++.+++.++
T Consensus 9 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (588)
T PRK11174 9 LTRWLKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIP--REALLPPFILLILLFVLRALLAWLRERV 86 (588)
T ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667788899999999999999999999999999999988865421111 1112223444555566777888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 041277 744 FAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWR 823 (1133)
Q Consensus 744 ~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~w~ 823 (1133)
..+.+.++..++|.++|+|++++|++||+ ++++|++++|+++|++.+++.+.+.+..++..++.+++.++++++++|+
T Consensus 87 ~~~~~~~~~~~lr~~~~~~ll~~~~~~~~--~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 164 (588)
T PRK11174 87 GFKAGQHIRQQIRQQVLDKLQQLGPAWIQ--GKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWA 164 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchhhc--cCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998 5789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHHHHH
Q 041277 824 LALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSW 903 (1133)
Q Consensus 824 l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~ 903 (1133)
+++++++++|+.+++..+..+..++..++.++..++.++.+.|.++|+++||+|+.|+++.++|++..++..+...+..+
T Consensus 165 l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 244 (588)
T PRK11174 165 AGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLR 244 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888888888888888888899999999999999999999999999999999999999988888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHH---------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 041277 904 YAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKAL---------FETFMILVSTGRVIADAGSMTTDIAKGSDAVGS 974 (1133)
Q Consensus 904 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~r 974 (1133)
......++...+..+..+++.+++++.+ .|.+++|.+ +.++++......|+..+...+..+.++..+.+|
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~r 323 (588)
T PRK11174 245 MAFLSSAVLEFFASISIALVAVYFGFSY-LGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAES 323 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777766666666655556665544 377777654 222244455678899999999999999999999
Q ss_pred HHHHhccCCCCCCCCCCCCCCCCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhc
Q 041277 975 VFAVMDRYTKIEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFY 1054 (1133)
Q Consensus 975 i~~~l~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~y 1054 (1133)
+.++++.+++.++. .....+....++|+|+||+|.|++ +.++|+|+||+|+|||++|||||||||||||+++|+|+|
T Consensus 324 i~~~l~~~~~~~~~-~~~~~~~~~~~~i~~~~vsf~~~~--~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 324 LVTFLETPLAHPQQ-GEKELASNDPVTIEAEDLEILSPD--GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred HHHHHcCCCcccCC-CccccCCCCCceEEEEeeEEeccC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 99999865432111 111111112467999999998863 346999999999999999999999999999999999999
Q ss_pred CCCCCeEEECCcccCCCChhHHhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1055 DPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1055 dp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
|++|+|++||+|+++++.+++|++|+||||||+||+|||||||+||+| +++|||+++||+.|+++|||++||+||||
T Consensus 401 -p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~-~~~~eei~~al~~a~l~~~i~~lp~G~dT 477 (588)
T PRK11174 401 -PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNP-DASDEQLQQALENAWVSEFLPLLPQGLDT 477 (588)
T ss_pred -CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCC-CCCHHHHHHHHHHhCHHHHHHhccccccc
Confidence 999999999999999999999999999999999999999999999976 58999999999999999999999999998
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-59 Score=589.24 Aligned_cols=461 Identities=18% Similarity=0.268 Sum_probs=401.8
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 664 SFRRLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINIIQHYN 743 (1133)
Q Consensus 664 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (1133)
.+++++.+.+++++.+...++++++..++....|+++..++|....... ......+...++++.++..++.+++.++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 219 (708)
T TIGR01193 143 SLLKFIPLITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKM---MGTLGIISIGLIIAYIIQQILSYIQIFL 219 (708)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667777788887777777888888888889999988886543211 1112223334445556677888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 041277 744 FAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWR 823 (1133)
Q Consensus 744 ~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~w~ 823 (1133)
..+.+.++..++|.++|+|++++|++||+ ++++|++++|++ |.+.+++.+.......+..++.+++.++++++++|+
T Consensus 220 ~~~~~~~~~~~l~~~~~~~ll~l~~~~f~--~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 296 (708)
T TIGR01193 220 LNVLGQRLSIDIILSYIKHLFELPMSFFS--TRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNML 296 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHhC--CCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999998 579999999998 899999988888777777777888888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHHHHH
Q 041277 824 LALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSW 903 (1133)
Q Consensus 824 l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~ 903 (1133)
+++++++.+|+++++.++..+..++..++..+..++.++.+.|+++|+++||+||.|+++.++|++..++..+...+..+
T Consensus 297 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 376 (708)
T TIGR01193 297 LFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQK 376 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988888989888999999999999999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCC
Q 041277 904 YAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRYT 983 (1133)
Q Consensus 904 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~ 983 (1133)
.......+...+..+..++++|+|++++..|.+|+|+++++..+...+..|+..+...+.+++.+..+.+|+.++++.++
T Consensus 377 ~~~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~ 456 (708)
T TIGR01193 377 ADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDS 456 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88887778777777888889999999999999999999999999999999999999999999999999999999998654
Q ss_pred CCCCCCCCCCCCCCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEE
Q 041277 984 KIEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKI 1063 (1133)
Q Consensus 984 ~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~I 1063 (1133)
+.+... .....+...|+|+|+||+|+|++ +.++|+|+||+|+|||+||||||||||||||+++|+|+|+|++|+|++
T Consensus 457 e~~~~~-~~~~~~~~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~i 533 (708)
T TIGR01193 457 EFINKK-KRTELNNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILL 533 (708)
T ss_pred cccccc-cccCCCCCCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEE
Confidence 432111 10112234578999999999963 346999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCChhHHhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1064 DDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1064 dG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
||+|++++++++||++|+||||||+||+|||||||++|.+++++|||+++||+.|+++|||++||+||||
T Consensus 534 dg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt 603 (708)
T TIGR01193 534 NGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQT 603 (708)
T ss_pred CCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCc
Confidence 9999999999999999999999999999999999999842358999999999999999999999999997
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-59 Score=584.44 Aligned_cols=457 Identities=20% Similarity=0.285 Sum_probs=399.1
Q ss_pred HHHHHHh-hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 665 FRRLVAL-NAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINIIQHYN 743 (1133)
Q Consensus 665 ~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (1133)
+++++++ .+++++.+...++++++..++....|+++..+++....... ......+.+.++++.++..++.+++.++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 199 (686)
T TIGR03797 123 LRDLLRFALRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDAD---RSLLVQIALALLAAAVGAAAFQLAQSLA 199 (686)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444 45667777777777778888888888888888876542211 1122233444555666678889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 041277 744 FAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWR 823 (1133)
Q Consensus 744 ~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~w~ 823 (1133)
..+.+.++..++|.++|+|++++|++||+ ++++|++++|++ |++.+++.+...+...+..+..+++.++++++++|.
T Consensus 200 ~~~~~~~~~~~l~~~~~~~ll~~~~~~~~--~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 276 (686)
T TIGR03797 200 VLRLETRMDASLQAAVWDRLLRLPVSFFR--QYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWK 276 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHC--CCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998 579999999997 799999998888777777777778888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHHHHH
Q 041277 824 LALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSW 903 (1133)
Q Consensus 824 l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~ 903 (1133)
+++++++++|+.+++.++..+..++..++..+..++.++.+.|+++|+++||+++.|+++.++|++..++..+...+...
T Consensus 277 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 356 (686)
T TIGR03797 277 LALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQR 356 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888888888888888888899999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCC
Q 041277 904 YAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRYT 983 (1133)
Q Consensus 904 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~ 983 (1133)
.......+...+..+..++++|+|++++.+|.+|.|+++++..+...+..|+..+...+.+++.+..+.+|+.++++.++
T Consensus 357 ~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~ 436 (686)
T TIGR03797 357 IENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALP 436 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 88888888888888889999999999999999999999999999999999999999999999999999999999998654
Q ss_pred CCCCCCCCCCCCCCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEE
Q 041277 984 KIEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKI 1063 (1133)
Q Consensus 984 ~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~I 1063 (1133)
+.+. ....+....|.|+|+||+|+|+++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++
T Consensus 437 e~~~---~~~~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~i 512 (686)
T TIGR03797 437 EVDE---AKTDPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFY 512 (686)
T ss_pred cccc---CcCCCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEE
Confidence 3221 111122245789999999999743 356999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCChhHHhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1064 DDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1064 dG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
||+|+++++.+++|++|++|||||+||+|||||||++|+| ++|||+++||+.|+++|+|++||+||||
T Consensus 513 dg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~--~~~e~i~~al~~a~l~~~i~~lp~G~dt 580 (686)
T TIGR03797 513 DGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP--LTLDEAWEAARMAGLAEDIRAMPMGMHT 580 (686)
T ss_pred CCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCC--CCHHHHHHHHHHcCcHHHHHhccccccc
Confidence 9999999999999999999999999999999999999976 7999999999999999999999999997
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-58 Score=566.27 Aligned_cols=461 Identities=19% Similarity=0.242 Sum_probs=392.1
Q ss_pred HHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChh-HHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 665 FRRLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHD-EIKKKTSIYAFCFLGLAVFTLVINIIQHYN 743 (1133)
Q Consensus 665 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (1133)
+++++++.+++++.+.++++++++..++....+++++.+++........ .......+....+++++++..++.++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (574)
T PRK11160 4 LLPFLKLYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLV 83 (574)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667788888888888888888888888888888888754322110 000011112223445556777888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 041277 744 FAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWR 823 (1133)
Q Consensus 744 ~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~w~ 823 (1133)
..+.+.++..++|.++|+|++++|++||+ ++++|++++|+++|++.++.++.+.+..++..++.++++++++++++|+
T Consensus 84 ~~~~~~~~~~~lR~~l~~~l~~~~~~~~~--~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (574)
T PRK11160 84 SHDATFRVLTHLRVFTFSKLLPLSPAGLA--RYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLT 161 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccChHhhc--cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998 5789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHHHH
Q 041277 824 LALVMIAVQPLVII-CFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQS 902 (1133)
Q Consensus 824 l~lv~l~~~pl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~ 902 (1133)
+++++++++|++++ ..++..+..++..++.++..++.++.+.|.++|+++||+|+.|+++.++|++..+++.+...+..
T Consensus 162 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 241 (574)
T PRK11160 162 LALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQA 241 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888887654 34566677777788888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHhcc
Q 041277 903 WYAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVS-TGRVIADAGSMTTDIAKGSDAVGSVFAVMDR 981 (1133)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~ 981 (1133)
+..+...++...+..+..++++++|+++ ..|.++.|.+++++.+... ...++..+......++++..+.+|+.++++.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~ 320 (574)
T PRK11160 242 NLTGLSQALMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQ 320 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9888888888888888888889999988 4889999999888777543 4567788888899999999999999999986
Q ss_pred CCCCCCCCCCCCCCCCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeE
Q 041277 982 YTKIEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061 (1133)
Q Consensus 982 ~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I 1061 (1133)
+++.+.. +...+.+..+.|+|+||+|+|+++ +.++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|
T Consensus 321 ~~~~~~~--~~~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I 397 (574)
T PRK11160 321 KPEVTFP--TTSTAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEI 397 (574)
T ss_pred CCCCCCC--cccCCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence 6543211 111112235789999999999753 2469999999999999999999999999999999999999999999
Q ss_pred EECCcccCCCChhHHhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1062 KIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1062 ~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
++||+|+++++.+++|++|++|||||+||+|||+|||++|+| +.+|||+++|++.+++++||++ |+||||
T Consensus 398 ~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~-~~~~~~i~~al~~~~l~~~i~~-p~GldT 467 (574)
T PRK11160 398 LLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAP-NASDEALIEVLQQVGLEKLLED-DKGLNA 467 (574)
T ss_pred EECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCC-ccCHHHHHHHHHHcCCHHHHcC-ccccCc
Confidence 999999999999999999999999999999999999999987 5799999999999999999999 999998
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-58 Score=580.37 Aligned_cols=459 Identities=22% Similarity=0.334 Sum_probs=400.1
Q ss_pred HHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 665 FRRLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINIIQHYNF 744 (1133)
Q Consensus 665 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (1133)
+++++.+.+++++.+...++++++..++....|+++..++|....... ......+...++++.++..++.+++.++.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (694)
T TIGR03375 135 KHWFWSTLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQA---FETLWVLAIGVALAIVFDFVLKTLRSYFL 211 (694)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc---HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666777777777777788888888888888888876542211 11122233344445566778889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 041277 745 AYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWRL 824 (1133)
Q Consensus 745 ~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~w~l 824 (1133)
.+.+.++..++|.++|+|++++|++| + ++++|++++|+ +|++.+++.+...+...+..++.+++.++++++++|.+
T Consensus 212 ~~~~~~~~~~l~~~~~~~ll~l~~~~-~--~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 287 (694)
T TIGR03375 212 DVAGKKADLILSAKLFERVLGLRMEA-R--PASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPL 287 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCccc-C--CCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999998 4 46899999999 79999999998888777777777778888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHHHHHH
Q 041277 825 ALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSWY 904 (1133)
Q Consensus 825 ~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~ 904 (1133)
+++.++.+|+.+++.++..++.++..++..+..++..+.+.|+++|+++||+|+.|+.+.++|++..++..+...+...+
T Consensus 288 ~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 367 (694)
T TIGR03375 288 VWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFL 367 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888888888888899999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCC
Q 041277 905 AGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRYTK 984 (1133)
Q Consensus 905 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~ 984 (1133)
......+...+..+..++++++|++++.+|.+|+|+++++..+...+..|+..+...+.+++.+..+.+|+.++++.+++
T Consensus 368 ~~~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e 447 (694)
T TIGR03375 368 SNLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVE 447 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 88888888888888889999999999999999999999999999999999999999999999999999999999986554
Q ss_pred CCCCCCCCCCCCCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEEC
Q 041277 985 IEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKID 1064 (1133)
Q Consensus 985 ~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~Id 1064 (1133)
.++.. .....+...|.|+|+||+|+|++. +.++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++|
T Consensus 448 ~~~~~-~~~~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~id 525 (694)
T TIGR03375 448 RPEGT-RFLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLD 525 (694)
T ss_pred CCCCC-CCCCCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Confidence 22111 111112245789999999999743 3469999999999999999999999999999999999999999999999
Q ss_pred CcccCCCChhHHhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1065 DRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1065 G~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
|+|+++++++++|++|++|||||+||+|||||||++++| +++|||+++|++.|+++|+|++||+||||
T Consensus 526 g~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~-~~~~~~i~~a~~~~~l~~~i~~lp~gl~T 593 (694)
T TIGR03375 526 GVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAP-YADDEEILRAAELAGVTEFVRRHPDGLDM 593 (694)
T ss_pred CEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCC-CCCHHHHHHHHHHcChHHHHHhCcccccc
Confidence 999999999999999999999999999999999999977 57999999999999999999999999998
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-58 Score=581.29 Aligned_cols=462 Identities=20% Similarity=0.250 Sum_probs=402.3
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 664 SFRRLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINIIQHYN 743 (1133)
Q Consensus 664 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (1133)
.++.++.+.+++++.+...++++++..++..+.|++...+++....... ......+.+.++++.++..++.+++.++
T Consensus 141 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 217 (710)
T TIGR03796 141 LLRALWRRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGR---QDWLRPLLLGMGLTALLQGVLTWLQLYY 217 (710)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666667777777777777777777777888888888876543211 1112223344555566677889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 041277 744 FAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWR 823 (1133)
Q Consensus 744 ~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~w~ 823 (1133)
..+.+.++..++|.++|+|++++|++||+ ++++|++++|+++| +.+++++...+..++..++.+++.++++++++|+
T Consensus 218 ~~~~~~~~~~~l~~~~~~~ll~l~~~~~~--~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 294 (710)
T TIGR03796 218 LRRLQIKLAVGMSARFLWHILRLPVRFFA--QRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPV 294 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHc--CCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998 57999999999988 6899999888888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHHHHH
Q 041277 824 LALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSW 903 (1133)
Q Consensus 824 l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~ 903 (1133)
++++.++.+|+.+++.++..+..++..++.++..++..+.+.|+++|+++||+++.|+.+.++|.+..++..+...+..+
T Consensus 295 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 374 (710)
T TIGR03796 295 LTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGV 374 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888888888888888888889999999999999999999999999999999999998888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCC
Q 041277 904 YAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRYT 983 (1133)
Q Consensus 904 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~ 983 (1133)
.......+...+..+..++++++|++++..|.+|+|+++++..+...+..|+..+...+..++.+..+.+|+.++++.++
T Consensus 375 ~~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~ 454 (710)
T TIGR03796 375 LTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPV 454 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88888888888888889999999999999999999999999999999999999999999999999999999999998655
Q ss_pred CCCCCCC---C-CCCC-CCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCC
Q 041277 984 KIEPEDP---E-GHQP-ERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLK 1058 (1133)
Q Consensus 984 ~~~~~~~---~-~~~~-~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~ 1058 (1133)
+.+.... . ...+ +...|.|+|+||+|+|++. +.++|+|+||+|+|||+||||||||||||||+++|+|+|+|++
T Consensus 455 e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~ 533 (710)
T TIGR03796 455 DPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWS 533 (710)
T ss_pred ccccccccccccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 4321110 0 0111 2235789999999999743 3569999999999999999999999999999999999999999
Q ss_pred CeEEECCcccCCCChhHHhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1059 GDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1059 G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
|+|++||+|+++++.+++|++|++|||||+||+|||||||++++| +++||++++||+.|+++|+|++||+||||
T Consensus 534 G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~-~~~~~~i~~al~~~~l~~~i~~lp~gl~t 607 (710)
T TIGR03796 534 GEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDP-TIPDADLVRACKDAAIHDVITSRPGGYDA 607 (710)
T ss_pred cEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCC-CCCHHHHHHHHHHhCCHHHHHhCcCcccc
Confidence 999999999999999999999999999999999999999999976 57999999999999999999999999997
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-57 Score=555.26 Aligned_cols=449 Identities=20% Similarity=0.270 Sum_probs=386.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 676 WKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINIIQHYNFAYMGEHLTKRI 755 (1133)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 755 (1133)
|+.+.++++++++.+++.+..|++++.+++........ ......+..+++++.++..++.+++.++..+.+.++..++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 79 (529)
T TIGR02857 2 RRALALLGLLGALGALLIIAQAWLLARVIDGLISAGEP--LAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQL 79 (529)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777888888888899999988865322111 1122334455556667778889999999999999999999
Q ss_pred HHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 041277 756 RERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWRLALVMIAVQPLV 835 (1133)
Q Consensus 756 r~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~w~l~lv~l~~~pl~ 835 (1133)
|.++|++++++|.+||+ ++++|++++|+++|++.+++.+...+..++..++.+++.+++++.++|.+++++++.+|+.
T Consensus 80 r~~l~~~l~~~~~~~~~--~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~ 157 (529)
T TIGR02857 80 RERLLAAVAALGPGWLQ--GRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLI 157 (529)
T ss_pred HHHHHHHHHhCCchhhc--cCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999999999999998 5799999999999999999999998899999988888889899999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHH
Q 041277 836 IICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSWYAGIGLAFSQSL 915 (1133)
Q Consensus 836 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 915 (1133)
+++.+...++.++..++.++..++..+.+.|+++|+++||+|+.|+++.++|++..++..+...+..+.......+...+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (529)
T TIGR02857 158 PIFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELF 237 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777777887777888888889999999999999999999999999999999999999888888877777777777766
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCC
Q 041277 916 ASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRYTKIEPEDPEGHQP 995 (1133)
Q Consensus 916 ~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~ 995 (1133)
..+...+++.++++.+..|.+|.|.+++++.+......|+..+......++++..+.+|+.++++.+++.. + ....+
T Consensus 238 ~~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~-~--~~~~~ 314 (529)
T TIGR02857 238 ATLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLA-G--KAPVT 314 (529)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccC-C--CcCCC
Confidence 66666666667777777999999999999999999999999999999999999999999999997432211 1 11111
Q ss_pred CCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhH
Q 041277 996 ERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRS 1075 (1133)
Q Consensus 996 ~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~ 1075 (1133)
....++|+|+||+|+||++ +.++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.++
T Consensus 315 ~~~~~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~ 393 (529)
T TIGR02857 315 AAPAPSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADS 393 (529)
T ss_pred CCCCCeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHH
Confidence 1123689999999999753 346999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1076 LRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1076 LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
+|+++++|||||+||+|||||||++|.| +.+|+|+++|++.++++|||++||+||||
T Consensus 394 lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~-~~~~~~i~~a~~~~~l~~~i~~lp~Gldt 450 (529)
T TIGR02857 394 WRDQIAWVPQHPFLFAGTIAENIRLARP-DASDAEIRRALERAGLDEFVAALPQGLDT 450 (529)
T ss_pred HHhheEEEcCCCcccCcCHHHHHhccCC-CCCHHHHHHHHHHcCcHHHHHhCcccccc
Confidence 9999999999999999999999999876 57899999999999999999999999997
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-57 Score=568.07 Aligned_cols=459 Identities=21% Similarity=0.331 Sum_probs=399.7
Q ss_pred HHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 665 FRRLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINIIQHYNF 744 (1133)
Q Consensus 665 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (1133)
+++++.+.+++++.+...++++++..++..+.|+++..+++....... ......+.+.++++.++..++.+++.++.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~---~~~l~~l~~~~~~~~~~~~~~~~l~~~~~ 203 (694)
T TIGR01846 127 FSWFIPAIIRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHRG---LSTLSVLALAMLAVAIFEPALGGLRTYLF 203 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666677777777777777777778888888888886542211 11223334445556667788899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 041277 745 AYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWRL 824 (1133)
Q Consensus 745 ~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~w~l 824 (1133)
...+.++..++|.++|+|++++|++||+ ++++|++++|+ +|++.+++++...+..++..++.+++.++++++++|.+
T Consensus 204 ~~~~~~~~~~l~~~~~~~l~~l~~~~f~--~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 280 (694)
T TIGR01846 204 AHLTSRIDVELGARLYRHLLGLPLGYFE--SRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTL 280 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHcC--CCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998 57999999999 69999999988877777777776777778889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHHHHHH
Q 041277 825 ALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSWY 904 (1133)
Q Consensus 825 ~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~ 904 (1133)
++++++.+|+++++.++..+..++..++..+..++.++.+.|+++|+++||+||.|+++.++|++..++..+...+..+.
T Consensus 281 ~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 360 (694)
T TIGR01846 281 TGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNL 360 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888888888878888888899999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCC
Q 041277 905 AGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRYTK 984 (1133)
Q Consensus 905 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~ 984 (1133)
......+...+..+..++++|+|++++..|.+|+|+++++.++...+..|+..+......++.+..+.+|+.++++.+++
T Consensus 361 ~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e 440 (694)
T TIGR01846 361 GNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTE 440 (694)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 88888888888888899999999999999999999999999999999999999999999999999999999999986543
Q ss_pred CCCCCCCCCCCCCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEEC
Q 041277 985 IEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKID 1064 (1133)
Q Consensus 985 ~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~Id 1064 (1133)
.+.. .....+...|.|+|+||+|+|+++ +.++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++|
T Consensus 441 ~~~~--~~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~id 517 (694)
T TIGR01846 441 PRSA--GLAALPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVD 517 (694)
T ss_pred ccCC--CCCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Confidence 2211 111122345789999999999743 3469999999999999999999999999999999999999999999999
Q ss_pred CcccCCCChhHHhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1065 DRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1065 G~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
|+|+++++.+++|++|++|||||+||+|||||||++++| +++++++++||+.++++|+|++||+||||
T Consensus 518 g~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~-~~~~~~i~~a~~~~~l~~~i~~lp~gl~t 585 (694)
T TIGR01846 518 GVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNP-GAPFEHVIHAAKLAGAHDFISELPQGYNT 585 (694)
T ss_pred CEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCC-CCCHHHHHHHHHHcChHHHHHhCcCccCc
Confidence 999999999999999999999999999999999999876 57999999999999999999999999997
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-57 Score=556.52 Aligned_cols=460 Identities=27% Similarity=0.428 Sum_probs=395.8
Q ss_pred HHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 665 FRRLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINIIQHYNF 744 (1133)
Q Consensus 665 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (1133)
++.++.+.+++++.+++.+++.++..++....++++..+++........ .........++++.++..++.+++.++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 89 (582)
T PRK11176 13 FRRLWPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKADR---SVLKWMPLVVIGLMILRGITSFISSYCI 89 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCch---hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666766666666555665556566677777777654422111 1111122233445666777888888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 041277 745 AYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWRL 824 (1133)
Q Consensus 745 ~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~w~l 824 (1133)
.+.+.++..++|.++++++.+.|.++|+ +.++|++++|+++|++.+++.+...+..++..++.+++.++++++++|.+
T Consensus 90 ~~~~~~~~~~lr~~~~~~l~~~~~~~~~--~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 167 (582)
T PRK11176 90 SWVSGKVVMTMRRRLFGHMMGMPVSFFD--KQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQL 167 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhC--CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998 57899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHHHHHH
Q 041277 825 ALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSWY 904 (1133)
Q Consensus 825 ~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~ 904 (1133)
++++++++|+.++...+..+..++..++.++..++..+.+.|.++|+++||+|+.|+++.++|++..+...+...+..+.
T Consensus 168 ~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (582)
T PRK11176 168 SLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSA 247 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888888888888888888899999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCC
Q 041277 905 AGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRYTK 984 (1133)
Q Consensus 905 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~ 984 (1133)
......+...+..+...+++++|++++..|.+++|++++++.+......|+..+...+..++++..+.+|+.++++.+++
T Consensus 248 ~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~ 327 (582)
T PRK11176 248 SSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQE 327 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 88888888888888888889999999999999999999999999889999999999999999999999999999875433
Q ss_pred CCCCCCCCCCCCCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEEC
Q 041277 985 IEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKID 1064 (1133)
Q Consensus 985 ~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~Id 1064 (1133)
.+. . ....++..++|+|+||+|+|+++ +.++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++|
T Consensus 328 ~~~-~--~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~ 403 (582)
T PRK11176 328 KDE-G--KRVIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLD 403 (582)
T ss_pred CCC-C--CcCCCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEEC
Confidence 211 1 11122234689999999999753 3579999999999999999999999999999999999999999999999
Q ss_pred CcccCCCChhHHhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1065 DRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1065 G~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
|+|+++++.+++|++|+||||||+||+|||||||++|+|++++|||+++|++.++++++|++||+||||
T Consensus 404 g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt 472 (582)
T PRK11176 404 GHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDT 472 (582)
T ss_pred CEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCc
Confidence 999999999999999999999999999999999999976668999999999999999999999999998
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-56 Score=550.52 Aligned_cols=458 Identities=28% Similarity=0.452 Sum_probs=406.5
Q ss_pred HHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 667 RLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINIIQHYNFAY 746 (1133)
Q Consensus 667 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (1133)
.++.+.+++++.++++++++++.+++.+..++++..+++....... ......+...++++.++..++.+++.++..+
T Consensus 4 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 80 (571)
T TIGR02203 4 RLWSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRD---RSVLWWVPLVVIGLAVLRGICSFVSTYLLSW 80 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666777778888888888888888888888887775443211 1122223444566677778888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 041277 747 MGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWRLAL 826 (1133)
Q Consensus 747 ~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~w~l~l 826 (1133)
.+.++...+|..+++++.+.|.++|+ +.++|++++|+++|++.+++.+...+..++..++.+++.++++++++|.+++
T Consensus 81 ~~~~~~~~lr~~l~~~~~~~~~~~~~--~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~ 158 (571)
T TIGR02203 81 VSNKVVRDIRVRMFEKLLGLPVSFFD--RQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTL 158 (571)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHhC--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999999999999999998 5789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 041277 827 VMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSWYAG 906 (1133)
Q Consensus 827 v~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 906 (1133)
+++++.|+.+++.++..+..++..++.++..++..+.+.|.++|+++||+++.++++.++|++..++..+...+..+..+
T Consensus 159 i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (571)
T TIGR02203 159 IVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGS 238 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999989999888888899999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCCCC
Q 041277 907 IGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRYTKIE 986 (1133)
Q Consensus 907 ~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~ 986 (1133)
....+...+..+...+++++|++++..|.+|+|.++++..+......|+..+......+..+..+.+|+.++++.+++.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~ 318 (571)
T TIGR02203 239 ISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKD 318 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 88888888888888999999999999999999999999999999999999999999999999999999999998644322
Q ss_pred CCCCCCCCCCCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCc
Q 041277 987 PEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDR 1066 (1133)
Q Consensus 987 ~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~ 1066 (1133)
.. ....++..++|+|+||+|+|+++ +.++|+|+||+|+|||+|||||+||||||||+++|+|+|+|++|+|++||+
T Consensus 319 ~~---~~~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~ 394 (571)
T TIGR02203 319 TG---TRAIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGH 394 (571)
T ss_pred CC---CCCCCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCE
Confidence 11 11112235689999999999754 347999999999999999999999999999999999999999999999999
Q ss_pred ccCCCChhHHhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1067 DIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1067 dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
|+++++.+++|++|+||||||+||+|||||||+++++++.+|+|+++|++.+++++++.+||+||||
T Consensus 395 ~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt 461 (571)
T TIGR02203 395 DLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDT 461 (571)
T ss_pred eHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccc
Confidence 9999999999999999999999999999999999976468999999999999999999999999997
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-56 Score=550.59 Aligned_cols=458 Identities=20% Similarity=0.305 Sum_probs=379.5
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 664 SFRRLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINIIQHYN 743 (1133)
Q Consensus 664 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (1133)
.++++..+.+++++.+.+.+++.++.+++.+..|++++.+++.......... .....+.+.++++.++..++.+++.+.
T Consensus 10 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (592)
T PRK10790 10 TLKRLLAYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPL-GLVAGLAAAYVGLQLLAAGLHYAQSLL 88 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcch-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666777777777778888888888888889888886543211110 001112223444455666778888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 041277 744 FAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWR 823 (1133)
Q Consensus 744 ~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~w~ 823 (1133)
....+.++..++|.++|++++++|++||+ ++++|++++|+++|++.+++.+...+..++..+..+++.++++++++|.
T Consensus 89 ~~~~~~~~~~~lr~~l~~~l~~~~~~~~~--~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (592)
T PRK10790 89 FNRAAVGVVQQLRTDVMDAALRQPLSAFD--TQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWR 166 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHhC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998 5789999999999999999999999999999999888998999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHHHHH
Q 041277 824 LALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSW 903 (1133)
Q Consensus 824 l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~ 903 (1133)
+++++++++|+.++...+..+..++..++.++..++.+.++.|.++|+++||+|+.|+++.++|.+..++..+...+..+
T Consensus 167 l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (592)
T PRK10790 167 MALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLR 246 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988898877777777777777777788888999999999999999999999999999999988888777776666
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccC
Q 041277 904 YAGIG-LAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRY 982 (1133)
Q Consensus 904 ~~~~~-~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~ 982 (1133)
..+.. ..+...+..+...+++++++. +..|.++.|.++++..+......|+..+...+..++++..+.+|+.++++.+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~ 325 (592)
T PRK10790 247 LDGFLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGP 325 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 55443 233333333333333333343 5789999999999999999999999999999999999999999999999754
Q ss_pred CCCCCCCCCCCCCCCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEE
Q 041277 983 TKIEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVK 1062 (1133)
Q Consensus 983 ~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~ 1062 (1133)
++. . .. ...+...++|+|+||+|+||+ +.++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|+
T Consensus 326 ~~~-~-~~--~~~~~~~~~i~~~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~ 399 (592)
T PRK10790 326 RQQ-Y-GN--DDRPLQSGRIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIR 399 (592)
T ss_pred Ccc-C-CC--CccCCCCCeEEEEEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEE
Confidence 321 1 11 111223478999999999974 34699999999999999999999999999999999999999999999
Q ss_pred ECCcccCCCChhHHhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1063 IDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1063 IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
+||+|+++++++++|++|++|||||+||+|||||||++|+ +++|+|+++||++++++++|++||+||||
T Consensus 400 idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~--~~~d~~i~~a~~~~gl~~~i~~lp~Gldt 468 (592)
T PRK10790 400 LDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR--DISEEQVWQALETVQLAELARSLPDGLYT 468 (592)
T ss_pred ECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC--CCCHHHHHHHHHHcCcHHHHHhccccccc
Confidence 9999999999999999999999999999999999999996 47999999999999999999999999997
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-55 Score=498.07 Aligned_cols=443 Identities=21% Similarity=0.294 Sum_probs=393.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 682 GCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINIIQHYNFAYMGEHLTKRIRERMLS 761 (1133)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~ 761 (1133)
..++.++.++....+.+++...++.++..+. ......+...++++.++..++.+.+.....+++.++..+||..+++
T Consensus 5 ~~ll~~l~~i~~i~qa~llA~~l~~l~~~~~---~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~ 81 (559)
T COG4988 5 SALLAVLSGIAIIAQAALLADILTKLIEGQL---FQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLD 81 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666667777777788887777664322 2234455666777778888999999999999999999999999999
Q ss_pred HHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 041277 762 KILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWRLALVMIAVQPLVIICFYA 841 (1133)
Q Consensus 762 ~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~w~l~lv~l~~~pl~~~~~~~ 841 (1133)
++.+.+..|-. ..|+|+..+.++..++.++.+++..++++..+.+.++..++.+++++|.-+++++++.|++.+++++
T Consensus 82 ~l~~~gp~~~~--~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMil 159 (559)
T COG4988 82 KLAKLGPAFIA--QKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMIL 159 (559)
T ss_pred HHHhCChhhhc--CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999987 5799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 842 RRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSWYAGIGLAFSQSLASCTWA 921 (1133)
Q Consensus 842 ~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 921 (1133)
..+..++.++++...+..+++++.+.++|+.|+|+|++.+...++..+..+++++..++..+......++..++.++..+
T Consensus 160 vg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiA 239 (559)
T COG4988 160 VGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIA 239 (559)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCcc
Q 041277 922 LDFWYGGRLIAD-GYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRYTKIEPEDPEGHQPERITG 1000 (1133)
Q Consensus 922 ~~~~~g~~l~~~-g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g 1000 (1133)
++..+.+..... |.++....+.++.+..-++.|+..++..++.-.++.++.+.++.+++.+.+..+...........+.
T Consensus 240 lvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~ 319 (559)
T COG4988 240 LVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPI 319 (559)
T ss_pred HHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCCc
Confidence 887776666666 8999988888888888999999999999999999999999999999865543222111011111234
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcc
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHI 1080 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~i 1080 (1133)
+|+++|++|+||+.+ ++++|+||+++||+++||||+||||||||+++|+||.+|++|+|.+||+|+++++.++||+++
T Consensus 320 ei~~~~l~~~y~~g~--~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i 397 (559)
T COG4988 320 EISLENLSFRYPDGK--PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQI 397 (559)
T ss_pred eeeecceEEecCCCC--cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHe
Confidence 566779999998653 689999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1081 ALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1081 siV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
++|||+|+||+|||||||++++| +.+||||++|++++++.||++. |+|+||
T Consensus 398 ~~v~Q~p~lf~gTireNi~l~~~-~~s~e~i~~al~~a~l~~~v~~-p~GLdt 448 (559)
T COG4988 398 SWVSQNPYLFAGTIRENILLARP-DASDEEIIAALDQAGLLEFVPK-PDGLDT 448 (559)
T ss_pred eeeCCCCccccccHHHHhhccCC-cCCHHHHHHHHHHhcHHHhhcC-CCcccc
Confidence 99999999999999999999987 4799999999999999999999 999997
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-55 Score=540.38 Aligned_cols=463 Identities=25% Similarity=0.417 Sum_probs=395.5
Q ss_pred HHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 665 FRRLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINIIQHYNF 744 (1133)
Q Consensus 665 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (1133)
++.++++.+++++.+.+.+++.++.+++....|+++..+++..+.... ......+..+++++.++..++.+++.++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (576)
T TIGR02204 6 LAALWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDS---SGLLNRYFAFLLVVALVLALGTAARFYLV 82 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666777777777888888888888888888876442211 11122233334444555667778888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 041277 745 AYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWRL 824 (1133)
Q Consensus 745 ~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~w~l 824 (1133)
.+.+.++..++|..++++++++|.++|+ ..++|++++|+++|++.+++++...+..++..++.+++.+++++.++|.+
T Consensus 83 ~~~~~~~~~~lr~~l~~~l~~~~~~~~~--~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 160 (576)
T TIGR02204 83 TWLGERVVADIRRAVFAHLISLSPSFFD--KNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKL 160 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHc--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999999999999998 46899999999999999999999999998999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHHHHHH
Q 041277 825 ALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSWY 904 (1133)
Q Consensus 825 ~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~ 904 (1133)
++++++.+|+.++..++..+..++..++..+..++..+.+.|.++|+++||+|+.|+++.++|++..++..+...+....
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (576)
T TIGR02204 161 TSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRT 240 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888888888888888898999999999999999999999999999999999999888887777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCC
Q 041277 905 AGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRYTK 984 (1133)
Q Consensus 905 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~ 984 (1133)
......+...+..+..++++++|++++.+|.+|.|.++++..+......|+..+...+.++..+..+.+|+.++++.+++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~ 320 (576)
T TIGR02204 241 RALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPD 320 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 76666666666667777888899999999999999999999999999999999999999999999999999999986543
Q ss_pred CCCCCCCCCCCCCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEEC
Q 041277 985 IEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKID 1064 (1133)
Q Consensus 985 ~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~Id 1064 (1133)
.+.+......+.+..+.|+|+||+|+||++++.++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++|
T Consensus 321 ~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~ 400 (576)
T TIGR02204 321 IKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLD 400 (576)
T ss_pred CCCCCCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEEC
Confidence 22111111111122467999999999985444579999999999999999999999999999999999999999999999
Q ss_pred CcccCCCChhHHhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1065 DRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1065 G~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
|+|+++++.+++|++|+||||||++|+|||||||++|+| +.+|+++++|+++++++++++++|+|+||
T Consensus 401 g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~-~~~~~~~~~~l~~~~l~~~i~~l~~gl~t 468 (576)
T TIGR02204 401 GVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRP-DATDEEVEAAARAAHAHEFISALPEGYDT 468 (576)
T ss_pred CEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCC-CCCHHHHHHHHHHcCcHHHHHhCCCCCCc
Confidence 999999999999999999999999999999999999976 46899999999999999999999999997
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-55 Score=536.22 Aligned_cols=457 Identities=19% Similarity=0.283 Sum_probs=391.0
Q ss_pred HHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 665 FRRLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINIIQHYNF 744 (1133)
Q Consensus 665 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (1133)
+++++++.+++++.+.+.++++++..++.++.|++++.+++.....+. ...+.+.+++..++..+..++..+..
T Consensus 7 ~~~l~~~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (585)
T TIGR01192 7 YVRALSYLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSD------VLPTLALWAGFGVFNTIAYVLVAREA 80 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777788888888888888888889999999999999886543211 11122222233344445555556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 041277 745 AYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWRL 824 (1133)
Q Consensus 745 ~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~w~l 824 (1133)
.+...++..++|.++|+|++++|++||+ ++++|++++|+++|++.++..+...+..++..++.+++.+++++.++|.+
T Consensus 81 ~~~~~~~~~~lr~~~~~~l~~l~~~~~~--~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 158 (585)
T TIGR01192 81 DRLAHGRRATLLTEAFGRIISMPLSWHQ--QRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRL 158 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777888999999999999998 57899999999999999999998888888888888888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHHHHHH
Q 041277 825 ALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSWY 904 (1133)
Q Consensus 825 ~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~ 904 (1133)
++++++++|+.+++.....++.++..++..+..++..+.+.|+++|+++||+|+.|+.+.+++++..++..+...+..+.
T Consensus 159 ~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (585)
T TIGR01192 159 SIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDW 238 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888888888888877888888899999999999999999999999999999999999888888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCC
Q 041277 905 AGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRYTK 984 (1133)
Q Consensus 905 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~ 984 (1133)
.+....+...+..+..++++++|++++.+|.++.|.++++..+......|+..+......+..+..+.+|+.++++.+++
T Consensus 239 ~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~ 318 (585)
T TIGR01192 239 WALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQ 318 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 77777777777778888889999999999999999999999999999999999999999999999999999999876543
Q ss_pred CCCCCCCCCCCCCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEEC
Q 041277 985 IEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKID 1064 (1133)
Q Consensus 985 ~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~Id 1064 (1133)
.++.. .....+...+.|+|+||+|+|+++ .++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|++|
T Consensus 319 ~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~ 395 (585)
T TIGR01192 319 REEPA-DAPELPNVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILID 395 (585)
T ss_pred ccCCc-cCCCCCCCCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEEC
Confidence 22111 111112234689999999999742 358999999999999999999999999999999999999999999999
Q ss_pred CcccCCCChhHHhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1065 DRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1065 G~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
|+|+++++.+++|+++++|||||++|++||+|||+++.| +++|+|+++|++.+++++++.++|+||||
T Consensus 396 g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~-~~~~~~~~~a~~~~~~~~~i~~l~~g~~t 463 (585)
T TIGR01192 396 GIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGRE-GATDEEVYEAAKAAAAHDFILKRSNGYDT 463 (585)
T ss_pred CEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCC-CCCHHHHHHHHHHhCcHHHHHhccccccc
Confidence 999999999999999999999999999999999999976 46899999999999999999999999997
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-58 Score=499.08 Aligned_cols=393 Identities=21% Similarity=0.288 Sum_probs=329.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHH
Q 041277 734 LVINIIQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIA 813 (1133)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~ 813 (1133)
++++-++.++...+..-..+++-.++|+|+..+++.|+- .+.+|+++.-+.+..+.+. ++...+.++...+.-+.++
T Consensus 273 G~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL--~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va 349 (790)
T KOG0056|consen 273 GFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHL--NRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVA 349 (790)
T ss_pred cchhhhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeee--cccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhh
Confidence 567788888888899999999999999999999999998 4689999988888887777 6666666666666555555
Q ss_pred HHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhh
Q 041277 814 FTM-GLFIAWRLALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQ 892 (1133)
Q Consensus 814 ~~~-~~~~~w~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~ 892 (1133)
++. ...++|+++++++.+..+.+.......-...+..|+...+..+..+...+++-+.+|||-||+|+++.++|.++..
T Consensus 350 ~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil 429 (790)
T KOG0056|consen 350 MVYFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAIL 429 (790)
T ss_pred hhhhhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHH
Confidence 543 3457999999888777666554443333333445555555566677788999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 041277 893 GPRRESIRQSWYAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAV 972 (1133)
Q Consensus 893 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 972 (1133)
++.+..++......+.+-.-..+..+..+.-..+.++++..+.+++|+++.+..|+....+|+.-++.+.-.+++...-+
T Consensus 430 ~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDm 509 (790)
T KOG0056|consen 430 KYQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDM 509 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhH
Confidence 99988777766655555555555555555555566677778999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCCCCCCCCCCCCCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhh
Q 041277 973 GSVFAVMDRYTKIEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIER 1052 (1133)
Q Consensus 973 ~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R 1052 (1133)
|++++++++++++.+ .|...+....+|.|+|+||+|+|. |+.|||+||||+++||++||+|||||+||||++++|+|
T Consensus 510 Enmfdllkee~eVvd-~P~a~pl~~~~G~i~fsnvtF~Y~--p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfR 586 (790)
T KOG0056|consen 510 ENMFDLLKEEPEVVD-LPGAPPLKVTQGKIEFSNVTFAYD--PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFR 586 (790)
T ss_pred HHHHHHhhcCchhhc-CCCCCCccccCCeEEEEEeEEecC--CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHH
Confidence 999999997766532 222222233579999999999994 56789999999999999999999999999999999999
Q ss_pred hcCCCCCeEEECCcccCCCChhHHhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccC
Q 041277 1053 FYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYD 1132 (1133)
Q Consensus 1053 ~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~d 1132 (1133)
|||.++|+|+|||+||+++..++||++||+||||.+||++||..||+||+|+ +++||+++|||+|++||-|.++|+||+
T Consensus 587 ffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~-AsneevyaAAkAA~IHdrIl~fPegY~ 665 (790)
T KOG0056|consen 587 FFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPS-ASNEEVYAAAKAAQIHDRILQFPEGYN 665 (790)
T ss_pred HhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCC-CChHHHHHHHHHhhHHHHHhcCchhhh
Confidence 9999999999999999999999999999999999999999999999999984 799999999999999999999999998
Q ss_pred C
Q 041277 1133 T 1133 (1133)
Q Consensus 1133 T 1133 (1133)
|
T Consensus 666 t 666 (790)
T KOG0056|consen 666 T 666 (790)
T ss_pred h
Confidence 7
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-55 Score=536.24 Aligned_cols=458 Identities=20% Similarity=0.326 Sum_probs=387.7
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 664 SFRRLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINIIQHYN 743 (1133)
Q Consensus 664 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (1133)
.+++++.+.++++..+.+.+++.++..++.+..++++..+++..... . ....+.+.++++.++..+..++..+.
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (588)
T PRK13657 6 LYARVLQYLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGK--G----DIFPLLAAWAGFGLFNIIAGVLVARH 79 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--c----cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777788888888888888888888888765421 1 11112223333334444444555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 041277 744 FAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWR 823 (1133)
Q Consensus 744 ~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~w~ 823 (1133)
..+...++..+++.++|+|++++|..+|+ +.++|++++|+++|++.+...+...+..++..++.+++.++++++++|.
T Consensus 80 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~--~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (588)
T PRK13657 80 ADRLAHRRRLAVLTEYFERIIQLPLAWHS--QRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWR 157 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHC--cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666677778999999999999998 5789999999999999999888888888888888888888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHHHHH
Q 041277 824 LALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSW 903 (1133)
Q Consensus 824 l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~ 903 (1133)
+++++++++|+.+++..+..+..++..++..+..++..+.+.|.++|+++||+|+.++.+.++|.+..++..+...+...
T Consensus 158 l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (588)
T PRK13657 158 LSLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLS 237 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888888888777777788888889999999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCC
Q 041277 904 YAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRYT 983 (1133)
Q Consensus 904 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~ 983 (1133)
.......+.+.+..+...+++++|++++.+|.+|+|+++++..+......|+..+......+..+..+.+|+.++++.++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~ 317 (588)
T PRK13657 238 WWALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVP 317 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 88777788888888888889999999999999999999999999999999999999999999999999999999987644
Q ss_pred CCCCCCCCCCCCCCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEE
Q 041277 984 KIEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKI 1063 (1133)
Q Consensus 984 ~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~I 1063 (1133)
+.+ +.+.....+...+.|+|+||+|+||++ .++|+|+||+++|||++||||+||||||||+++|+|+|+|++|+|++
T Consensus 318 ~~~-~~~~~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i 394 (588)
T PRK13657 318 DVR-DPPGAIDLGRVKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILI 394 (588)
T ss_pred ccC-CCCCCCCcCCCCCeEEEEEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEE
Confidence 321 111111112234689999999999743 35999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCChhHHhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1064 DDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1064 dG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
||+|+++++.+++|++|+||||||+||+|||||||++++| +.+|+|+++|++.++++++|+++|+||||
T Consensus 395 ~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~-~~~d~~i~~al~~~~l~~~i~~lp~gldt 463 (588)
T PRK13657 395 DGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRP-DATDEEMRAAAERAQAHDFIERKPDGYDT 463 (588)
T ss_pred CCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCC-CCCHHHHHHHHHHhCHHHHHHhCcccccc
Confidence 9999999999999999999999999999999999999976 57899999999999999999999999997
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-55 Score=533.55 Aligned_cols=437 Identities=21% Similarity=0.289 Sum_probs=373.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 041277 688 LFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINIIQHYNFAYMGEHLTKRIRERMLSKILTFE 767 (1133)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll~~p 767 (1133)
+..++....|++++.+++........ ......|..+++++.++..++.+++.++....+.++..++|.++|++++++|
T Consensus 6 ~~~~~~~~~p~~~~~iid~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~ 83 (569)
T PRK10789 6 IIAMLQLIPPKVVGIIVDGVTEQHMT--TGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQH 83 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33444556677777777755322111 1122234444555556667778888888888999999999999999999999
Q ss_pred ccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 768 VGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMG-LFIAWRLALVMIAVQPLVIICFYARRVLL 846 (1133)
Q Consensus 768 ~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~w~l~lv~l~~~pl~~~~~~~~~~~~ 846 (1133)
++||+ ++++|++++|+++|++.++..+...+..++..++.++++++++ ++++|.+++++++++|+.+++.....+..
T Consensus 84 ~~~~~--~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~ 161 (569)
T PRK10789 84 PEFYL--RHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQL 161 (569)
T ss_pred HHHHc--CCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998 5789999999999999999888888888887766666665555 57999999999999999888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 847 KSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSWYAGIGLAFSQSLASCTWALDFWY 926 (1133)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 926 (1133)
++..++.++..++..+.+.|+++|+++||+|+.|+++.++|.+..++..+...+..+..+....+...+..+...+++++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 241 (569)
T PRK10789 162 HERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGG 241 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88788888888999999999999999999999999999999999999988888888888877777777777778888899
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCcccEEEEe
Q 041277 927 GGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRYTKIEPEDPEGHQPERITGNIELQN 1006 (1133)
Q Consensus 927 g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~f~n 1006 (1133)
|++++.+|.+|+|.++++..+......|+..+......+..+..+.+|+.++++.+++.+.. ....+..+++|+|+|
T Consensus 242 g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~---~~~~~~~~~~I~~~~ 318 (569)
T PRK10789 242 GSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDG---SEPVPEGRGELDVNI 318 (569)
T ss_pred HHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC---CCCCCCCCCcEEEEE
Confidence 99999999999999999999999999999999999999999999999999999865432211 111222357899999
Q ss_pred EEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcccccccc
Q 041277 1007 VHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQE 1086 (1133)
Q Consensus 1007 VsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qd 1086 (1133)
|+|+|+.. +.++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++|+++++||||
T Consensus 319 v~~~y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~ 397 (569)
T PRK10789 319 RQFTYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQT 397 (569)
T ss_pred EEEECCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccC
Confidence 99999743 34699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1087 PTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1087 p~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
|+||+|||||||++|+| +++|+++++|++.+++++++.+||+||||
T Consensus 398 ~~lf~~ti~~Ni~~~~~-~~~~~~~~~~~~~~~l~~~i~~lp~gl~t 443 (569)
T PRK10789 398 PFLFSDTVANNIALGRP-DATQQEIEHVARLASVHDDILRLPQGYDT 443 (569)
T ss_pred CeeccccHHHHHhcCCC-CCCHHHHHHHHHHcCCHHHHHhCcCcccc
Confidence 99999999999999976 47999999999999999999999999997
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-54 Score=479.05 Aligned_cols=436 Identities=21% Similarity=0.314 Sum_probs=356.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCh-hHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 041277 689 FGAVQPIYAFAMGSMISVYFLTDH-DEIKKKTSIYAFCFLGLAVFTLVINIIQHYNFAYMGEHLTKRIRERMLSKILTFE 767 (1133)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll~~p 767 (1133)
+.......|..+...++.....+. +.......-.+..|++..+...+++.++.+.+.++.+++.++.-.++|+++++++
T Consensus 42 aK~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld 121 (591)
T KOG0057|consen 42 AKILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLD 121 (591)
T ss_pred hhHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345666677777777665421111 1111112234556778888889999999999999999999999999999999999
Q ss_pred ccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 768 VGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMG-LFIAWRLALVMIAVQPLVIICFYARRVLL 846 (1133)
Q Consensus 768 ~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~w~l~lv~l~~~pl~~~~~~~~~~~~ 846 (1133)
++||. +..+|.+.+.+.+-...+...+...+..++..++-+......+ .-..+..+++.+..+..+..+.+....+.
T Consensus 122 ~~~~~--~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~R 199 (591)
T KOG0057|consen 122 LSFFL--SRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWR 199 (591)
T ss_pred HHhhc--CCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHH
Confidence 99998 4679999999999999999888877777777666555444332 23455556665555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 847 KSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSWYAGIGLAFSQSLASCTWALDFWY 926 (1133)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 926 (1133)
.+.+++..++.....+.+.|++.+-.+||+||.|+++.++|+..+.++.+.+.+.....++....-..+.....+.+...
T Consensus 200 n~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l 279 (591)
T KOG0057|consen 200 NRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIMVL 279 (591)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677788888899999999999999999999999999999999999999988888777777766666666777777777
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCcccEEEEe
Q 041277 927 GGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRYTKIEPEDPEGHQPERITGNIELQN 1006 (1133)
Q Consensus 927 g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~f~n 1006 (1133)
|..-+..|.+|.|+++....++.+...|+..++..+.++..+..-+...+...+...++... ..++...+|.|+|+|
T Consensus 280 ~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~~---~~~i~~~~~~I~F~d 356 (591)
T KOG0057|consen 280 GSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQEA---ALPIELFGGSIEFDD 356 (591)
T ss_pred HhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhhc---cCCcccCCCcEEEEe
Confidence 77778889999999999999999999999999999999998888888777665432222111 112223467899999
Q ss_pred EEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcccccccc
Q 041277 1007 VHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQE 1086 (1133)
Q Consensus 1007 VsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qd 1086 (1133)
|+|.|+ |+++||+|+||+|++||||||||+|||||||++++|+||+| .+|+|+|||+||++++++++|+.||+||||
T Consensus 357 V~f~y~--~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd 433 (591)
T KOG0057|consen 357 VHFSYG--PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQD 433 (591)
T ss_pred eEEEeC--CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCc
Confidence 999996 45579999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred cccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1087 PTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1087 p~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
..||++||-+||.||+| .+++||+.++||+|++||.|.+||+||+|
T Consensus 434 ~~LFndTIl~NI~YGn~-sas~eeV~e~~k~a~~hd~i~~l~~GY~T 479 (591)
T KOG0057|consen 434 SVLFNDTILYNIKYGNP-SASDEEVVEACKRAGLHDVISRLPDGYQT 479 (591)
T ss_pred ccccchhHHHHhhcCCC-CcCHHHHHHHHHHcCcHHHHHhccccchh
Confidence 99999999999999998 57999999999999999999999999997
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-53 Score=519.96 Aligned_cols=452 Identities=14% Similarity=0.142 Sum_probs=370.2
Q ss_pred HHHHHHHhhc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 041277 664 SFRRLVALNA-PEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINIIQHY 742 (1133)
Q Consensus 664 ~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (1133)
.+++++.+.+ ++++.++++++++++.++.....++++..+++..... . .. ....++++.++..++.++..+
T Consensus 4 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~-~----~~---~~~~~~~~~~~~~~~~~~~~~ 75 (555)
T TIGR01194 4 AIGEILALLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENFL-G----QG---SLFSFGGLCLLALLFRIGADI 75 (555)
T ss_pred hHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-c----ch---HHHHHHHHHHHHHHHHHHHHH
Confidence 4677778888 8999888888888888888777777777665421100 0 00 112233445566678888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhH
Q 041277 743 NFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAW 822 (1133)
Q Consensus 743 ~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~w 822 (1133)
+....+.++..++|.++|+|++++|++||+ ++++|++++|+++|++.+++++.. +..++..++.++++++++++++|
T Consensus 76 ~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~--~~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~ 152 (555)
T TIGR01194 76 FPAYAGMHIIANLRIALCEKILGAPIEEID--RRGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSV 152 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHH--hcCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999999999999999998 579999999999999999998864 67778888888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchH--HHHHHHHHHhhcHHHHHHH
Q 041277 823 RLALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQH--RILKMLEKAQQGPRRESIR 900 (1133)
Q Consensus 823 ~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~--~~~~~~~~~~~~~~~~~~~ 900 (1133)
.+++++++++|+.++...+..++.++..++.++..++.++.+.|.++|++++|+|+.++ ...+++++..++..+...+
T Consensus 153 ~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (555)
T TIGR01194 153 PMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHII 232 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999999888877777777777777788888999999999999999999999953 5678888888888777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhc
Q 041277 901 QSWYAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMD 980 (1133)
Q Consensus 901 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~ 980 (1133)
..+.......+...+..+..++.+++|++. |.++.|.+++++++......|+..+......++++..+++|+.++++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~ 309 (555)
T TIGR01194 233 EILIFIAAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGE 309 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 665555545555555555555555666543 78999999999999999999999999999999999999999999986
Q ss_pred cCCCCCCC--CCC-CC----CCCCCcccEEEEeEEEECCCCC--CCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHh
Q 041277 981 RYTKIEPE--DPE-GH----QPERITGNIELQNVHFAYPARP--DVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIE 1051 (1133)
Q Consensus 981 ~~~~~~~~--~~~-~~----~~~~~~g~I~f~nVsF~Y~~~~--~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~ 1051 (1133)
...+.++. .++ .. +++...++|+|+||+|+|++.+ +.++|+|+||+|++||++|||||||||||||+++|+
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~ 389 (555)
T TIGR01194 310 RFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFC 389 (555)
T ss_pred hhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 32111110 011 00 1112246899999999997532 236999999999999999999999999999999999
Q ss_pred hhcCCCCCeEEECCcccCCCChhHHhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhccccc
Q 041277 1052 RFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGY 1131 (1133)
Q Consensus 1052 R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~ 1131 (1133)
|+|+|++|+|++||+|+++++.+++|+++++|+|||+||++|+++|+ .| +.++++++++++.++++++++++|+||
T Consensus 390 g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~---~~-~~~~~~~~~~~~~~~l~~~~~~lp~g~ 465 (555)
T TIGR01194 390 GLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE---GE-HASLDNAQQYLQRLEIADKVKIEDGGF 465 (555)
T ss_pred CCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc---cc-chhHHHHHHHHHHcCCchhhccccccc
Confidence 99999999999999999999999999999999999999999999996 34 468999999999999999999999999
Q ss_pred CC
Q 041277 1132 DT 1133 (1133)
Q Consensus 1132 dT 1133 (1133)
||
T Consensus 466 ~t 467 (555)
T TIGR01194 466 ST 467 (555)
T ss_pred CC
Confidence 97
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-53 Score=512.87 Aligned_cols=443 Identities=19% Similarity=0.252 Sum_probs=374.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 674 PEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINIIQHYNFAYMGEHLTK 753 (1133)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 753 (1133)
++++.+...++++++..++....|+.+..+++....... ......+.++++++.++..++.+++.++..+.+.++..
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (544)
T TIGR01842 3 KNKSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGS---VPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDG 79 (544)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666777777777888888888888886542211 11222344445555666778888999999999999999
Q ss_pred HHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 041277 754 RIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGD-RTALLVQTISAVTIAFTMGLFIAWRLALVMIAVQ 832 (1133)
Q Consensus 754 ~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~w~l~lv~l~~~ 832 (1133)
++|.++|+|++++|+.. .|...+++++|++.+++.+.. .+..++..++.++. +++++.++|++++++++..
T Consensus 80 ~lr~~~~~~ll~~~~~~-------~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~l~li~l~~~ 151 (544)
T TIGR01842 80 ALNQPIFAASFSATLRR-------GKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIY-LLVCFLLHPWIGILALGGA 151 (544)
T ss_pred HHHHHHHHHHhcCcccC-------ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHH
Confidence 99999999999999843 255788999999999998877 45556665555544 4567899999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHH
Q 041277 833 PLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSWYAGIGLAFS 912 (1133)
Q Consensus 833 pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 912 (1133)
|++++..++..+..++..++.++..++..+.+.|+++|+++||+|+.|+++.++|++..++..+...+..+..+....+.
T Consensus 152 ~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (544)
T TIGR01842 152 VVLVGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLS 231 (544)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877777777777777778888889999999999999999999999999999999999999888888888888878888
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 041277 913 QSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRYTKIEPEDPEG 992 (1133)
Q Consensus 913 ~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~ 992 (1133)
..+..+..++++++|++++.+|.+|+|.+++++.+......|+..+......++.+..+.+|+.++++.+++.++ .
T Consensus 232 ~~~~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~---~- 307 (544)
T TIGR01842 232 KYFRIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDP---A- 307 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccC---C-
Confidence 777777888889999999999999999999999999999999999999999999999999999999975443211 1
Q ss_pred CCCCCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCC
Q 041277 993 HQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYH 1072 (1133)
Q Consensus 993 ~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~ 1072 (1133)
...+...+.|+|+||+|+||++ +.++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|+++++
T Consensus 308 ~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~ 386 (544)
T TIGR01842 308 MPLPEPEGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWD 386 (544)
T ss_pred CCCCCCCCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCC
Confidence 1112234689999999999743 346899999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1073 LRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1073 l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
.+++|+++++|||||++|++||||||+++++ +++++++++|++.+++++++++||+||||
T Consensus 387 ~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~gl~t 446 (544)
T TIGR01842 387 RETFGKHIGYLPQDVELFPGTVAENIARFGE-NADPEKIIEAAKLAGVHELILRLPDGYDT 446 (544)
T ss_pred HHHHhhheEEecCCcccccccHHHHHhccCC-CCCHHHHHHHHHHhChHHHHHhCcccccc
Confidence 9999999999999999999999999998765 47899999999999999999999999997
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-52 Score=465.69 Aligned_cols=398 Identities=18% Similarity=0.299 Sum_probs=335.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHH
Q 041277 728 GLAVFTLVINIIQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTI 807 (1133)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~ 807 (1133)
++++...+..|...+..+.+..++..+||.++|+++...+..-.. +-++||++||+..|++.+|+.+-..+...+..+
T Consensus 66 ~~aI~Rt~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~--r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~ 143 (573)
T COG4987 66 GLAILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLL--RYRSGDLLNRLVADVDALDNLYLRVIAPAVVAL 143 (573)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHH--hcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHH
Confidence 466777888888889999999999999999999999999888777 468999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHH
Q 041277 808 SAVTIAFTMGLFIAWRLALVMIAVQPL-VIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKM 886 (1133)
Q Consensus 808 ~~~i~~~~~~~~~~w~l~lv~l~~~pl-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~ 886 (1133)
+...+..+.+.+++|.+++.+..++.+ ++++.+++.++-++..+..++.++.+.+++.|.+.|....+.||+++++.+.
T Consensus 144 ~~~~~~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~ 223 (573)
T COG4987 144 VLIAVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTA 223 (573)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHH
Confidence 888888888888999998766544443 4555566667777778888888899999999999999999999999999999
Q ss_pred HHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH-HhHHH
Q 041277 887 LEKAQQGPRRESIRQSWYAGIGLAFSQSLASCTWA-LDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAG-SMTTD 964 (1133)
Q Consensus 887 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~-~~~~~ 964 (1133)
+.+..+.+.+...+...+..+..++..++..+... .++|.+ ..+..|..+......+++.......++..+. ..+..
T Consensus 224 l~~~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a-~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~ 302 (573)
T COG4987 224 LEATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMA-AQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQH 302 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHH
Confidence 99999999999999999998888888888777666 444444 3455566664333333333334444444444 66688
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHH
Q 041277 965 IAKGSDAVGSVFAVMDRYTKIEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKS 1044 (1133)
Q Consensus 965 ~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKS 1044 (1133)
..+...|+.|+.++.+.+++...+.++. +.... .++++||+|+||++ ++++|+|+||++++|||||||||||||||
T Consensus 303 lgq~~~Sa~Rl~~i~~q~~e~~~~~~~~--~~~~~-~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKS 378 (573)
T COG4987 303 LGQVIASARRLNDILDQKPEVTFPDEQT--ATTGQ-ALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKS 378 (573)
T ss_pred hhHHHHHHHHHhhhccCCcccCCCcccc--CCccc-eeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHH
Confidence 8999999999999998877654331111 11112 79999999999864 55799999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHH
Q 041277 1045 TIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFI 1124 (1133)
Q Consensus 1045 TL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI 1124 (1133)
|++++|.|-|||++|+|.++|.|++.++.+++|+.|++++|.++||+||+||||++++|+ +||||+|+|++++++++++
T Consensus 379 TllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~-AsDEel~~aL~qvgL~~l~ 457 (573)
T COG4987 379 TLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPD-ASDEELWAALQQVGLEKLL 457 (573)
T ss_pred HHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCC-CCHHHHHHHHHHcCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999985 8999999999999999999
Q ss_pred hhcccccCC
Q 041277 1125 AGLNEGYDT 1133 (1133)
Q Consensus 1125 ~~LP~G~dT 1133 (1133)
++.|+||||
T Consensus 458 ~~~p~gl~t 466 (573)
T COG4987 458 ESAPDGLNT 466 (573)
T ss_pred HhChhhhhc
Confidence 999999997
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-53 Score=484.06 Aligned_cols=226 Identities=26% Similarity=0.443 Sum_probs=184.5
Q ss_pred cEEEEEEEEEcCCCCC-CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCC----ccEEEECCeecCCCCHHH
Q 041277 360 EVEFKCVQFAYPSRPE-SIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPL----GGEIILDGVSIDKLQLKW 434 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~-~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~----~G~i~~~g~~~~~~~~~~ 434 (1133)
-++++|++..|..... ..+++||||++++||++||||.|||||||+.+.|+|+.++. +|+|.++|.|+..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 4899999999975422 25899999999999999999999999999999999999987 899999999998888765
Q ss_pred Hh----hhceEEecCCC-Cccc--cHHHHHh----cCCC---CCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCC
Q 041277 435 LR----SQMGLVSQEPA-LFAT--SIKENIL----FGKE---DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQM 500 (1133)
Q Consensus 435 ~r----~~i~~v~Q~~~-l~~~--ti~eni~----~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~L 500 (1133)
+| +.|+||||+|. .++- ||.+-|. .... ....++..+.++.+++.+-... ...+.+|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~---------~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR---------DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh---------ccCCccc
Confidence 53 56999999985 3442 6555443 2221 1123345555555555433222 3456799
Q ss_pred ChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEe
Q 041277 501 SGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVME 577 (1133)
Q Consensus 501 SgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~ 577 (1133)
|||||||+.||+||+.+|++||+||||++||+.++.+|.+.|+++. .|.++|+|||++..+.+ ||||+||++|+++|
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999875 58999999999999987 99999999999999
Q ss_pred ecCcchhccccchhhHH
Q 041277 578 TGSHDELIQAESGLYTS 594 (1133)
Q Consensus 578 ~g~~~~l~~~~~~~~~~ 594 (1133)
.|+.++++++....|.+
T Consensus 236 ~G~~~~i~~~p~hpYT~ 252 (539)
T COG1123 236 TGPTEEILSNPQHPYTR 252 (539)
T ss_pred ecCHHHHHhccCCcccH
Confidence 99999998755444443
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-53 Score=419.97 Aligned_cols=216 Identities=31% Similarity=0.524 Sum_probs=192.1
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCC-CCHHHHhhh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDK-LQLKWLRSQ 438 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~-~~~~~~r~~ 438 (1133)
-|+++|++++|++. .||+|||++|++||.++|+||||||||||+++|.|+-+|++|+|.+||.++.. .+...+|++
T Consensus 2 mi~i~~l~K~fg~~---~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFGDK---EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeCCe---EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 38999999999854 49999999999999999999999999999999999999999999999987743 367889999
Q ss_pred ceEEecCCCCccc-cHHHHHhcCCC---CCC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHH
Q 041277 439 MGLVSQEPALFAT-SIKENILFGKE---DAS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAI 510 (1133)
Q Consensus 439 i~~v~Q~~~l~~~-ti~eni~~~~~---~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~i 510 (1133)
+|+|+|+..||+- |+.||+.++.- ..+ .+...+.++++++.+-.+..| .+|||||||||||
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----------~qLSGGQqQRVAI 147 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP-----------AQLSGGQQQRVAI 147 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc-----------cccCcHHHHHHHH
Confidence 9999999999965 99999998632 122 233455667778777777777 4899999999999
Q ss_pred HHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcccc
Q 041277 511 ARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQAE 588 (1133)
Q Consensus 511 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 588 (1133)
||||+.+|+++|+|||||||||+...++.+.++++. +|.|.|+|||.+.+++. ||||+.|++|+|+++|+++++..++
T Consensus 148 ARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p 227 (240)
T COG1126 148 ARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNP 227 (240)
T ss_pred HHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCC
Confidence 999999999999999999999999999999999886 58999999999999988 9999999999999999999998754
Q ss_pred c
Q 041277 589 S 589 (1133)
Q Consensus 589 ~ 589 (1133)
.
T Consensus 228 ~ 228 (240)
T COG1126 228 K 228 (240)
T ss_pred C
Confidence 3
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-52 Score=446.14 Aligned_cols=387 Identities=23% Similarity=0.333 Sum_probs=332.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHHH
Q 041277 741 HYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFT-MGLF 819 (1133)
Q Consensus 741 ~~~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~-~~~~ 819 (1133)
..++..++..+.+.+--+.|.|+.++++.|+- +..+|.+...+......++..+...+...+..++-+....+ +...
T Consensus 3 ~~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl--~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~ 80 (497)
T COG5265 3 DRLFSPVGQIAVRVLAYVTFFHLHSLSLRFHL--ERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRV 80 (497)
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHhcchhhhh--hcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Confidence 34577788889999999999999999999997 46788888888888878887777777777766665544443 4456
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHH
Q 041277 820 IAWRLALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESI 899 (1133)
Q Consensus 820 ~~w~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~ 899 (1133)
++|+.+++.++++.+++++.....-..-...++..++.+++++...+++-+..|+|.|+.|+++..+|+..++.+.+...
T Consensus 81 ~~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~ 160 (497)
T COG5265 81 YGWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAI 160 (497)
T ss_pred cccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHH
Confidence 79999999888888777766555544445567778888899999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 041277 900 RQSWYAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVM 979 (1133)
Q Consensus 900 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l 979 (1133)
+.....+++...-..+......+....++..+..|.+|.|+++..-.++.....|+..++....++.++....++.++++
T Consensus 161 k~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl 240 (497)
T COG5265 161 KVHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLL 240 (497)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhh
Confidence 87776666666666667777777777888888999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCCC-CCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCC
Q 041277 980 DRYTKIEPEDPEGHQPE-RITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLK 1058 (1133)
Q Consensus 980 ~~~~~~~~~~~~~~~~~-~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~ 1058 (1133)
+.+.+.... +..++.. ...|.|.|+||+|.|. |..|+|+|+||++++|+|+||||+||+||||+.++|+||||+++
T Consensus 241 ~~~~~v~d~-pda~~L~~~~~g~v~F~~V~F~y~--~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~s 317 (497)
T COG5265 241 DVEAEVSDA-PDAPPLWPVRLGAVAFINVSFAYD--PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNS 317 (497)
T ss_pred ccchhhccC-CCCccccccccceEEEEEEEeecc--ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcC
Confidence 876554322 1111112 3468999999999995 56689999999999999999999999999999999999999999
Q ss_pred CeEEECCcccCCCChhHHhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1059 GDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1059 G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
|.|.|||+||+++..++||+.||+||||.+||++||..||+||+| .+|+||+++|+|.|++|+||++||+||||
T Consensus 318 G~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~-~at~eev~aaa~~aqi~~fi~~lP~gy~t 391 (497)
T COG5265 318 GSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRP-DATAEEVGAAAEAAQIHDFIQSLPEGYDT 391 (497)
T ss_pred ceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCc-cccHHHHHHHHHHhhhhHHHHhCchhhhc
Confidence 999999999999999999999999999999999999999999998 57999999999999999999999999997
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-51 Score=497.77 Aligned_cols=211 Identities=29% Similarity=0.477 Sum_probs=175.0
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCC--CccEEEECCeecCCCCHHH-Hh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP--LGGEIILDGVSIDKLQLKW-LR 436 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~--~~G~i~~~g~~~~~~~~~~-~r 436 (1133)
-|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+... .|
T Consensus 5 ~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 5 LLEMKNITKTFGG---VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred eEEEeeeEEEeCC---eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence 4899999999974 3599999999999999999999999999999999999996 8999999999998766544 45
Q ss_pred hhceEEecCCCCccc-cHHHHHhcCCCC-----CCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHH
Q 041277 437 SQMGLVSQEPALFAT-SIKENILFGKED-----ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAI 510 (1133)
Q Consensus 437 ~~i~~v~Q~~~l~~~-ti~eni~~~~~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~i 510 (1133)
+++|||+|++.++.. |++||+.++... .+.++..+ .+.+.++.+ |++........+||||||||++|
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGqkqrv~l 154 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYL-----RAQKLLAQL--KLDINPATPVGNLGLGQQQLVEI 154 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHH-----HHHHHHHHc--CCCCCcccchhhCCHHHHHHHHH
Confidence 779999999988865 999999986421 12222111 122333333 23333445567899999999999
Q ss_pred HHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecC
Q 041277 511 ARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGS 580 (1133)
Q Consensus 511 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 580 (1133)
||||+.+|++|||||||++||+.++..+.+.|.++. +|+|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus 155 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 226 (506)
T PRK13549 155 AKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRP 226 (506)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecc
Confidence 999999999999999999999999999999998874 58899999999999875 99999999999987664
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-51 Score=506.17 Aligned_cols=219 Identities=26% Similarity=0.388 Sum_probs=176.1
Q ss_pred cEEEEEEEEEcCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecC----------
Q 041277 360 EVEFKCVQFAYPSRP-ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSID---------- 428 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~---------- 428 (1133)
-|+++|++++|+... ..++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 589999999996421 246999999999999999999999999999999999999999999999997552
Q ss_pred CCCHH---HHh-hhceEEecCC--CCcc-ccHHHHHhcCCC---CCCH----HHHHHHHHHhchHHHHHhCCCccccccc
Q 041277 429 KLQLK---WLR-SQMGLVSQEP--ALFA-TSIKENILFGKE---DASM----EEVIEAAKASNAHNFIRQLPQQYDTQVG 494 (1133)
Q Consensus 429 ~~~~~---~~r-~~i~~v~Q~~--~l~~-~ti~eni~~~~~---~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~ 494 (1133)
+.+.. .+| ++||||+|+| .+++ .||+||+.++.. .... +++.++++..++.+ .+....
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~--------~~~~~~ 163 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPE--------AQTILS 163 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCC--------hhhHHh
Confidence 22222 233 4799999998 5666 499999987521 1122 23334444444311 012234
Q ss_pred CCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-C-CCeEEEEecCcchhhc-CCEEEEEe
Q 041277 495 ERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-V-GRTTIIIAHRLSTIRN-ADVIAVVQ 571 (1133)
Q Consensus 495 ~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~-~~t~i~itH~~~~~~~-~d~i~~l~ 571 (1133)
....+||||||||++|||||+.+|++|||||||++||+.+++.+.+.++++. + |+|+|+|||+++.+.. ||||++|+
T Consensus 164 ~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~ 243 (623)
T PRK10261 164 RYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMY 243 (623)
T ss_pred CCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEee
Confidence 4556899999999999999999999999999999999999999999999875 3 8999999999999865 99999999
Q ss_pred CCeEEeecCcchhcc
Q 041277 572 DGQVMETGSHDELIQ 586 (1133)
Q Consensus 572 ~G~i~~~g~~~~l~~ 586 (1133)
+|++++.|+++++..
T Consensus 244 ~G~i~~~g~~~~~~~ 258 (623)
T PRK10261 244 QGEAVETGSVEQIFH 258 (623)
T ss_pred CCeecccCCHHHhhc
Confidence 999999998877643
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-51 Score=498.70 Aligned_cols=213 Identities=23% Similarity=0.400 Sum_probs=175.1
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHH-hhh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWL-RSQ 438 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~-r~~ 438 (1133)
-|+++|++++|+++ ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.... +++
T Consensus 5 ~l~~~~l~~~~~~~---~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 5 YISMAGIGKSFGPV---HALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred eEEEeeeEEEcCCe---EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 48999999999743 48999999999999999999999999999999999999999999999999987775543 457
Q ss_pred ceEEecCCCCccc-cHHHHHhcCCCCC---------CHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHH
Q 041277 439 MGLVSQEPALFAT-SIKENILFGKEDA---------SMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRI 508 (1133)
Q Consensus 439 i~~v~Q~~~l~~~-ti~eni~~~~~~~---------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 508 (1133)
++||+|++.++.. |++||+.++.... ..++..+ .+.+.++.+ |+.........+||||||||+
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LSgG~~qrv 154 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRV-----RAAMMLLRV--GLKVDLDEKVANLSISHKQML 154 (510)
T ss_pred eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHH-----HHHHHHHHc--CCCCCcccchhhCCHHHHHHH
Confidence 9999999988875 9999998763210 1111111 112233333 232233445568999999999
Q ss_pred HHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcc
Q 041277 509 AIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHD 582 (1133)
Q Consensus 509 ~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 582 (1133)
+|||||+.+|++|||||||++||+.++..+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 155 ~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (510)
T PRK09700 155 EIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVS 230 (510)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchh
Confidence 99999999999999999999999999999999998874 48999999999999875 9999999999998766543
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-49 Score=514.39 Aligned_cols=215 Identities=25% Similarity=0.418 Sum_probs=184.7
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhh
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 438 (1133)
..|+++|++++|++. ++.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +....|++
T Consensus 927 ~~L~I~nLsK~y~~~-~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~ 1004 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPS-GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQS 1004 (2272)
T ss_pred ceEEEEeEEEEecCC-CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhc
Confidence 469999999999632 2459999999999999999999999999999999999999999999999999864 45667889
Q ss_pred ceEEecCCCCccc-cHHHHHhcCCC--CCCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHH
Q 041277 439 MGLVSQEPALFAT-SIKENILFGKE--DASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIA 511 (1133)
Q Consensus 439 i~~v~Q~~~l~~~-ti~eni~~~~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iA 511 (1133)
+|||||++.+|+. |++||+.++.. ..+. +++.+.++..++.+ .......+||||||||++||
T Consensus 1005 IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~-----------~~~~~~~~LSGGqKQRLsLA 1073 (2272)
T TIGR01257 1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHH-----------KRNEEAQDLSGGMQRKLSVA 1073 (2272)
T ss_pred EEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-----------hhcCChhhCCHHHHHHHHHH
Confidence 9999999999875 99999987421 1111 23444444444433 33445568999999999999
Q ss_pred HHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 512 RAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 512 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
|||+.+|+++|||||||+||+.+++.+.+.|++..+|+|+|++||+++.+.. ||||++|++|++++.|++++|.+
T Consensus 1074 rALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~ 1149 (2272)
T TIGR01257 1074 IAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKN 1149 (2272)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHH
Confidence 9999999999999999999999999999999998789999999999999876 99999999999999999998864
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-51 Score=497.35 Aligned_cols=217 Identities=27% Similarity=0.430 Sum_probs=174.2
Q ss_pred cEEEEEEEEEcCCC-CCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCC-----CccEEEECCeecCCCCHH
Q 041277 360 EVEFKCVQFAYPSR-PESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP-----LGGEIILDGVSIDKLQLK 433 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~-~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~-----~~G~i~~~g~~~~~~~~~ 433 (1133)
-++++|++++|+.. ..+++|+|+||++++||++||+||||||||||+++|+|+++| ++|+|.++|.++...+..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 48999999999632 124699999999999999999999999999999999999987 799999999999876643
Q ss_pred H---Hh-hhceEEecCCC--Ccc-ccHHHHHhcCC---CCCC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCC
Q 041277 434 W---LR-SQMGLVSQEPA--LFA-TSIKENILFGK---EDAS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQ 499 (1133)
Q Consensus 434 ~---~r-~~i~~v~Q~~~--l~~-~ti~eni~~~~---~~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~ 499 (1133)
. +| +++|||+|++. ++. .|+++|+.++. ...+ .+++.++++..++.+.. ........+
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~--------~~~~~~~~~ 156 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAA--------KRLTDYPHQ 156 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH--------HHHhhCCcc
Confidence 3 33 57999999985 444 48999986421 0111 23344555555543211 012234468
Q ss_pred CChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEE
Q 041277 500 MSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVM 576 (1133)
Q Consensus 500 LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~ 576 (1133)
||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|+++
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~ 236 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV 236 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998864 37999999999999875 9999999999999
Q ss_pred eecCcchh
Q 041277 577 ETGSHDEL 584 (1133)
Q Consensus 577 ~~g~~~~l 584 (1133)
+.|+++++
T Consensus 237 ~~g~~~~~ 244 (529)
T PRK15134 237 EQNRAATL 244 (529)
T ss_pred EeCCHHHH
Confidence 87765544
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-50 Score=525.55 Aligned_cols=202 Identities=24% Similarity=0.311 Sum_probs=166.9
Q ss_pred CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhcc----CCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccc
Q 041277 376 SIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFY----APLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFAT 451 (1133)
Q Consensus 376 ~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~----~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ 451 (1133)
+.+|+|+|+++++||+++|+||||||||||+++|+|.. .|.+|+|.+||+++.+.. ...|+.++||+|++.+++.
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEeccccccCCC
Confidence 45899999999999999999999999999999999986 578999999999886543 3456779999999888865
Q ss_pred -cHHHHHhcCC----C-----CCCHHHHH-----HHHHHhchHHHHHhCCCcccccccC-CCCCCChHHHHHHHHHHHHh
Q 041277 452 -SIKENILFGK----E-----DASMEEVI-----EAAKASNAHNFIRQLPQQYDTQVGE-RGVQMSGGQKQRIAIARAII 515 (1133)
Q Consensus 452 -ti~eni~~~~----~-----~~~~~~~~-----~~~~~~~~~~~i~~l~~g~~t~~~~-~g~~LSgGqkqri~iARal~ 515 (1133)
||+||+.|+. | ..+.++.. ++++.. .+.+-.+|.+|+ ....||||||||++|||||+
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-------gL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~ 225 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATY-------GLSHTRNTKVGNDFVRGVSGGERKRVSIAEASL 225 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHc-------CcccccCceeCCCcCCCCCcccchHHHHHHHHH
Confidence 9999998852 1 11222211 122222 234445777875 45689999999999999999
Q ss_pred hCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcc-hhh-cCCEEEEEeCCeEEeecCcchhc
Q 041277 516 KAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLS-TIR-NADVIAVVQDGQVMETGSHDELI 585 (1133)
Q Consensus 516 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~-~~~-~~d~i~~l~~G~i~~~g~~~~l~ 585 (1133)
.+|++++|||||++||+.++..+.+.|+++. .|+|+|+++|+++ .+. .+|+|++|++|+++..|+++++.
T Consensus 226 ~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~ 299 (1394)
T TIGR00956 226 GGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAK 299 (1394)
T ss_pred hCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHH
Confidence 9999999999999999999999999999875 3899999999974 554 49999999999999999998874
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-50 Score=488.23 Aligned_cols=211 Identities=26% Similarity=0.420 Sum_probs=173.1
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHH-Hhhh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKW-LRSQ 438 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~-~r~~ 438 (1133)
-|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .+++
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 4 LLQLKGIDKAFPG---VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred eEEEeeeEEEeCC---eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 3899999999964 34899999999999999999999999999999999999999999999999987655444 3567
Q ss_pred ceEEecCCCCccc-cHHHHHhcCCCC------CCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHH
Q 041277 439 MGLVSQEPALFAT-SIKENILFGKED------ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIA 511 (1133)
Q Consensus 439 i~~v~Q~~~l~~~-ti~eni~~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iA 511 (1133)
++||+|++.++.. |++||+.++... .+.++..+ .+.+.++.+ |+.........+||||||||++||
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la 153 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYA-----EADKLLARL--NLRFSSDKLVGELSIGEQQMVEIA 153 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHH-----HHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHH
Confidence 9999999988865 999999986421 11221111 112233333 232233444568999999999999
Q ss_pred HHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecC
Q 041277 512 RAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGS 580 (1133)
Q Consensus 512 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 580 (1133)
|||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus 154 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~ 224 (501)
T PRK10762 154 KVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAERE 224 (501)
T ss_pred HHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecC
Confidence 99999999999999999999999999999998864 47899999999999875 99999999999987654
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-50 Score=484.34 Aligned_cols=209 Identities=29% Similarity=0.480 Sum_probs=170.6
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCC--CccEEEECCeecCCCCHHH-Hhh
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP--LGGEIILDGVSIDKLQLKW-LRS 437 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~--~~G~i~~~g~~~~~~~~~~-~r~ 437 (1133)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++...+... .++
T Consensus 2 l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 2 LEMKGIVKTFGG---VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred EEEEeEEEEeCC---eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 689999999964 3489999999999999999999999999999999999987 7999999999998776544 456
Q ss_pred hceEEecCCCCccc-cHHHHHhcCCCC------CCHHHHHHHHHHhchHHHHHhCCCcccccc-cCCCCCCChHHHHHHH
Q 041277 438 QMGLVSQEPALFAT-SIKENILFGKED------ASMEEVIEAAKASNAHNFIRQLPQQYDTQV-GERGVQMSGGQKQRIA 509 (1133)
Q Consensus 438 ~i~~v~Q~~~l~~~-ti~eni~~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~-~~~g~~LSgGqkqri~ 509 (1133)
+++||||++.++.. |++||+.++... ...++..+ .+.+.++.+ |++... .....+||||||||++
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~ 151 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYL-----RAKNLLREL--QLDADNVTRPVGDYGGGQQQLVE 151 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHH-----HHHHHHHHc--CCCCCcccCchhhCCHHHHHHHH
Confidence 79999999988865 999999886421 11122111 122333333 222111 2235689999999999
Q ss_pred HHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeec
Q 041277 510 IARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETG 579 (1133)
Q Consensus 510 iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 579 (1133)
|||||+.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 152 iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~ 223 (500)
T TIGR02633 152 IAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATK 223 (500)
T ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeec
Confidence 9999999999999999999999999999999998864 58899999999999876 9999999999997543
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-50 Score=482.50 Aligned_cols=208 Identities=23% Similarity=0.300 Sum_probs=176.9
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
|+++|++++|+++ .+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 4 l~~~~l~~~~~~~---~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~ 80 (490)
T PRK10938 4 LQISQGTFRLSDT---KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVS 80 (490)
T ss_pred EEEEeEEEEcCCe---eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhc
Confidence 7899999999743 4899999999999999999999999999999999999999999999998887666667778899
Q ss_pred EEecCCCC--c-------cccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHH
Q 041277 441 LVSQEPAL--F-------ATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIA 511 (1133)
Q Consensus 441 ~v~Q~~~l--~-------~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iA 511 (1133)
|++|++.+ + ..|++||+.++. ...+++.++++..++.+.... ...+||||||||++||
T Consensus 81 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~la 147 (490)
T PRK10938 81 DEWQRNNTDMLSPGEDDTGRTTAEIIQDEV--KDPARCEQLAQQFGITALLDR-----------RFKYLSTGETRKTLLC 147 (490)
T ss_pred eeccCcchhhcccchhhccccHHHhcccch--hHHHHHHHHHHHcCCHhhhhC-----------CcccCCHHHHHHHHHH
Confidence 99998753 2 358999987542 123455666666666554433 3358999999999999
Q ss_pred HHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchh
Q 041277 512 RAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584 (1133)
Q Consensus 512 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 584 (1133)
|||+.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|+++..|+++++
T Consensus 148 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 222 (490)
T PRK10938 148 QALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEI 222 (490)
T ss_pred HHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999998874 47899999999999876 999999999999887765443
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-50 Score=489.50 Aligned_cols=205 Identities=27% Similarity=0.501 Sum_probs=165.7
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhcc--CCCccEEEEC---------------
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFY--APLGGEIILD--------------- 423 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~--~~~~G~i~~~--------------- 423 (1133)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 1 IEVKNLTKKFDG---KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK 77 (520)
T ss_pred CEEEEEEEEECC---eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence 478999999964 34899999999999999999999999999999999996 7999999997
Q ss_pred --------CeecC-------CCC---HHHHhhhceEEecC-CCCcc-ccHHHHHhcCCC--CCCH----HHHHHHHHHhc
Q 041277 424 --------GVSID-------KLQ---LKWLRSQMGLVSQE-PALFA-TSIKENILFGKE--DASM----EEVIEAAKASN 477 (1133)
Q Consensus 424 --------g~~~~-------~~~---~~~~r~~i~~v~Q~-~~l~~-~ti~eni~~~~~--~~~~----~~~~~~~~~~~ 477 (1133)
|.++. ..+ ...+|+.++||+|+ +.+|+ .|++||+.++.. .... +++.++++..+
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g 157 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQ 157 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 33221 111 13456789999998 57776 499999987421 1111 23444555555
Q ss_pred hHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEe
Q 041277 478 AHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIA 555 (1133)
Q Consensus 478 ~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~it 555 (1133)
+.+..+ ....+||||||||++|||||+.+|++|||||||++||+++.+.+.+.|+++. .|+|+|+||
T Consensus 158 l~~~~~-----------~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivt 226 (520)
T TIGR03269 158 LSHRIT-----------HIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTS 226 (520)
T ss_pred Chhhhh-----------cCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Confidence 544333 3346899999999999999999999999999999999999999999999874 389999999
Q ss_pred cCcchhhc-CCEEEEEeCCeEEeec
Q 041277 556 HRLSTIRN-ADVIAVVQDGQVMETG 579 (1133)
Q Consensus 556 H~~~~~~~-~d~i~~l~~G~i~~~g 579 (1133)
|+++.+.. ||+|++|++|++++.|
T Consensus 227 Hd~~~~~~~~d~i~~l~~G~i~~~g 251 (520)
T TIGR03269 227 HWPEVIEDLSDKAIWLENGEIKEEG 251 (520)
T ss_pred CCHHHHHHhcCEEEEEeCCEEeeec
Confidence 99999875 9999999999987544
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-49 Score=479.07 Aligned_cols=211 Identities=28% Similarity=0.470 Sum_probs=178.2
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHh-hh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLR-SQ 438 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r-~~ 438 (1133)
.|+++|++++|+++ .+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++ +.
T Consensus 11 ~l~~~~l~~~~~~~---~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 11 LLCARSISKQYSGV---EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred eEEEEeEEEEeCCc---eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 48999999999743 489999999999999999999999999999999999999999999999999877766554 46
Q ss_pred ceEEecCCCCccc-cHHHHHhcCCCCCC--HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHh
Q 041277 439 MGLVSQEPALFAT-SIKENILFGKEDAS--MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAII 515 (1133)
Q Consensus 439 i~~v~Q~~~l~~~-ti~eni~~~~~~~~--~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~ 515 (1133)
+|||+|++.++.. |++||+.++..... .+++.++++..++. ........+||||||||++|||||+
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgG~~qrv~la~aL~ 156 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQ-----------LDLDSSAGSLEVADRQIVEILRGLM 156 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCC-----------ccccCChhhCCHHHHHHHHHHHHHH
Confidence 9999999988875 99999998753211 22334444444332 2233445689999999999999999
Q ss_pred hCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchh
Q 041277 516 KAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584 (1133)
Q Consensus 516 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 584 (1133)
.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (510)
T PRK15439 157 RDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADL 227 (510)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHc
Confidence 9999999999999999999999999998874 58999999999999865 999999999999887765543
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-49 Score=480.87 Aligned_cols=208 Identities=25% Similarity=0.413 Sum_probs=172.3
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCH-HHHhhh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQL-KWLRSQ 438 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~-~~~r~~ 438 (1133)
-|+++|++++|+++ ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|++
T Consensus 4 ~l~~~~l~~~~~~~---~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 4 YLSFDGIGKTFPGV---KALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80 (501)
T ss_pred eEEEeeeEEEECCE---EEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence 48999999999743 48999999999999999999999999999999999999999999999999875543 456778
Q ss_pred ceEEecCCCCccc-cHHHHHhcCCCC-----CCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHH
Q 041277 439 MGLVSQEPALFAT-SIKENILFGKED-----ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIAR 512 (1133)
Q Consensus 439 i~~v~Q~~~l~~~-ti~eni~~~~~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iAR 512 (1133)
|+||+|++.++.. |++||+.++... ...++..+ .+.+.++.+ |++........+||||||||++|||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lar 153 (501)
T PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNY-----EAREQLEHL--GVDIDPDTPLKYLSIGQRQMVEIAK 153 (501)
T ss_pred EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHH-----HHHHHHHHc--CCCCCcCCchhhCCHHHHHHHHHHH
Confidence 9999999988875 999999986421 11222111 122334433 2222334456789999999999999
Q ss_pred HHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEe
Q 041277 513 AIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVME 577 (1133)
Q Consensus 513 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~ 577 (1133)
||+.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|+++.
T Consensus 154 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~ 220 (501)
T PRK11288 154 ALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVA 220 (501)
T ss_pred HHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999999999998874 58999999999999866 99999999999874
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-51 Score=412.23 Aligned_cols=218 Identities=32% Similarity=0.531 Sum_probs=194.6
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
|+|+|||++|.+. .+++|+||+|++||+++++|||||||||++++|.|+++|++|+|++||+++++++...||++||
T Consensus 2 I~~~nvsk~y~~~---~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYGNK---KAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcCCc---eeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 7899999999743 4999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCccc-cHHHHHhcCCC------CCCHHHHHHHHHHhchH--HHHHhCCCcccccccCCCCCCChHHHHHHHHH
Q 041277 441 LVSQEPALFAT-SIKENILFGKE------DASMEEVIEAAKASNAH--NFIRQLPQQYDTQVGERGVQMSGGQKQRIAIA 511 (1133)
Q Consensus 441 ~v~Q~~~l~~~-ti~eni~~~~~------~~~~~~~~~~~~~~~~~--~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iA 511 (1133)
||-|..-||+- ||.|||.+-.. ....+++.+.+++++++ +|..+.| .+|||||+|||.+|
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP-----------~eLSGGQQQRVGv~ 147 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYP-----------HELSGGQQQRVGVA 147 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc-----------hhcCcchhhHHHHH
Confidence 99999999965 99999987321 11234566777777775 4777776 48999999999999
Q ss_pred HHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhh-cCCEEEEEeCCeEEeecCcchhcccc
Q 041277 512 RAIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIR-NADVIAVVQDGQVMETGSHDELIQAE 588 (1133)
Q Consensus 512 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 588 (1133)
|||+.+|+|+|+|||++||||.+++.+|+-+.++.+ ++|+|+|||+++.+- -+|||.+|++|+++..++|++++.++
T Consensus 148 RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~P 227 (309)
T COG1125 148 RALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANP 227 (309)
T ss_pred HHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCc
Confidence 999999999999999999999999999999988754 899999999999865 59999999999999999999999765
Q ss_pred chhh
Q 041277 589 SGLY 592 (1133)
Q Consensus 589 ~~~~ 592 (1133)
...|
T Consensus 228 an~F 231 (309)
T COG1125 228 ANDF 231 (309)
T ss_pred cHHH
Confidence 4444
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-50 Score=421.77 Aligned_cols=218 Identities=33% Similarity=0.538 Sum_probs=193.9
Q ss_pred EEEEEEEEEcCCC--CCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHH---HH
Q 041277 361 VEFKCVQFAYPSR--PESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLK---WL 435 (1133)
Q Consensus 361 i~~~~v~~~y~~~--~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~---~~ 435 (1133)
|++++|++.|+.. ....+|+|+||+|++||+.||+|+||+|||||++++.++-.|++|+|.+||+|+..++.. .+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 7899999999853 124689999999999999999999999999999999999999999999999999888754 56
Q ss_pred hhhceEEecCCCCcc-ccHHHHHhcCCCC--C----CHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHH
Q 041277 436 RSQMGLVSQEPALFA-TSIKENILFGKED--A----SMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRI 508 (1133)
Q Consensus 436 r~~i~~v~Q~~~l~~-~ti~eni~~~~~~--~----~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 508 (1133)
|++||++||++.|++ .||++|++|+.+- . -.+++.+.++.+++.|..++.| .+|||||||||
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP-----------~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP-----------AQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc-----------hhcCcchhhHH
Confidence 788999999999997 5999999997541 1 2345677788888877776666 59999999999
Q ss_pred HHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhc
Q 041277 509 AIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELI 585 (1133)
Q Consensus 509 ~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 585 (1133)
+|||||+.+|+|||.|||||||||++.+.|.+.|++.. -|-|+++|||.++.++. |||+.||++|+++|+|+..++.
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 99999999999999999999999999999999998864 48999999999999998 9999999999999999999998
Q ss_pred cccc
Q 041277 586 QAES 589 (1133)
Q Consensus 586 ~~~~ 589 (1133)
.++.
T Consensus 231 ~~Pk 234 (339)
T COG1135 231 ANPK 234 (339)
T ss_pred cCcc
Confidence 7543
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-49 Score=434.73 Aligned_cols=237 Identities=27% Similarity=0.461 Sum_probs=219.4
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhh
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 438 (1133)
|.|+++|++++|+.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|++||.++..++...+|++
T Consensus 1 g~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~ 78 (275)
T cd03289 1 GQMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKA 78 (275)
T ss_pred CeEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhh
Confidence 468999999999643 2458999999999999999999999999999999999998 78999999999999999999999
Q ss_pred ceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCC
Q 041277 439 MGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAP 518 (1133)
Q Consensus 439 i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~ 518 (1133)
|+||||+|.+|++|+++|+.... ..++++++++++.+++.+++.++|+++++.++++|.+||||||||++||||++++|
T Consensus 79 i~~v~q~~~lf~~tv~~nl~~~~-~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p 157 (275)
T cd03289 79 FGVIPQKVFIFSGTFRKNLDPYG-KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKA 157 (275)
T ss_pred EEEECCCcccchhhHHHHhhhcc-CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999996432 24678899999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhccccchhhHHHHHh
Q 041277 519 RILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRL 598 (1133)
Q Consensus 519 ~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 598 (1133)
+|+||||||++||+.+++.+++.|++..+++|+|+||||++++..||||++|++|++++.|+++++++ ..+.|++++..
T Consensus 158 ~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~-~~~~~~~~~~~ 236 (275)
T cd03289 158 KILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLN-EKSHFKQAISP 236 (275)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhh-CcHHHHHHHhh
Confidence 99999999999999999999999998777899999999999998899999999999999999999998 46777777754
Q ss_pred h
Q 041277 599 Q 599 (1133)
Q Consensus 599 ~ 599 (1133)
.
T Consensus 237 ~ 237 (275)
T cd03289 237 S 237 (275)
T ss_pred c
Confidence 3
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-49 Score=473.31 Aligned_cols=209 Identities=24% Similarity=0.378 Sum_probs=172.1
Q ss_pred EEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCH-HHHhhhceE
Q 041277 363 FKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQL-KWLRSQMGL 441 (1133)
Q Consensus 363 ~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~-~~~r~~i~~ 441 (1133)
++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..++++++|
T Consensus 1 ~~nl~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 77 (491)
T PRK10982 1 MSNISKSFPG---VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISM 77 (491)
T ss_pred CCceEEEeCC---EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence 3689999974 348999999999999999999999999999999999999999999999999876554 345678999
Q ss_pred EecCCCCcc-ccHHHHHhcCCCC-----CCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHh
Q 041277 442 VSQEPALFA-TSIKENILFGKED-----ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAII 515 (1133)
Q Consensus 442 v~Q~~~l~~-~ti~eni~~~~~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~ 515 (1133)
|+|++.++. .|++||+.++... .+.++..+ .+.+.++.+ |++........+||||||||++|||||+
T Consensus 78 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lA~al~ 150 (491)
T PRK10982 78 VHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYR-----DTKAIFDEL--DIDIDPRAKVATLSVSQMQMIEIAKAFS 150 (491)
T ss_pred EecccccccCCCHHHHhhcccccccccccCHHHHHH-----HHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHHHHH
Confidence 999998775 4999999976421 11222111 122334443 3334445566789999999999999999
Q ss_pred hCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCc
Q 041277 516 KAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSH 581 (1133)
Q Consensus 516 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~ 581 (1133)
.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|++
T Consensus 151 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~ 218 (491)
T PRK10982 151 YNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPL 218 (491)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecCh
Confidence 9999999999999999999999999998864 58999999999998865 999999999999876543
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-50 Score=394.72 Aligned_cols=219 Identities=32% Similarity=0.499 Sum_probs=196.6
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCc-----cEEEECCeecCC--CC
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLG-----GEIILDGVSIDK--LQ 431 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~-----G~i~~~g~~~~~--~~ 431 (1133)
..++++|+++.|++. .+|+|||++|++++++|++|||||||||+|+++.|+.+... |+|.++|+|+.+ ++
T Consensus 6 ~~~~~~~l~~yYg~~---~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 6 PAIEVRDLNLYYGDK---HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred ceeEecceeEEECch---hhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 358999999999843 49999999999999999999999999999999999998875 999999999976 47
Q ss_pred HHHHhhhceEEecCCCCccccHHHHHhcCCCC------CCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHH
Q 041277 432 LKWLRSQMGLVSQEPALFATSIKENILFGKED------ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQK 505 (1133)
Q Consensus 432 ~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 505 (1133)
...+|++||+|+|.|..|+.||+||+.||..- .-++.++++++.+.+++-+.. .+.+.+..|||||+
T Consensus 83 ~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQ 155 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQ 155 (253)
T ss_pred HHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHH
Confidence 88999999999999999999999999998531 113457788999988876543 23456778999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchh
Q 041277 506 QRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584 (1133)
Q Consensus 506 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 584 (1133)
||+||||||.-+|+|||||||||||||.+..+|.+.|.+++++-|+|+|||+++.+.+ +|+..++..|+++|.|+.+++
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~i 235 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKI 235 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhh
Confidence 9999999999999999999999999999999999999999999999999999998765 999999999999999999998
Q ss_pred ccc
Q 041277 585 IQA 587 (1133)
Q Consensus 585 ~~~ 587 (1133)
..+
T Consensus 236 F~~ 238 (253)
T COG1117 236 FTN 238 (253)
T ss_pred hcC
Confidence 764
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-48 Score=467.86 Aligned_cols=208 Identities=24% Similarity=0.413 Sum_probs=165.1
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
|+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. .+||
T Consensus 2 l~i~~ls~~~~~~---~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~ 67 (530)
T PRK15064 2 LSTANITMQFGAK---PLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLG 67 (530)
T ss_pred EEEEEEEEEeCCc---EeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEE
Confidence 7899999999743 4999999999999999999999999999999999999999999999873 3699
Q ss_pred EEecCCCCccc-cHHHHHhcCCCCC----------------CHH---HHHHH----------HHHhchHHHHHhCCCccc
Q 041277 441 LVSQEPALFAT-SIKENILFGKEDA----------------SME---EVIEA----------AKASNAHNFIRQLPQQYD 490 (1133)
Q Consensus 441 ~v~Q~~~l~~~-ti~eni~~~~~~~----------------~~~---~~~~~----------~~~~~~~~~i~~l~~g~~ 490 (1133)
|++|++.++.. |++||+.++.... ..+ .+.+. -....+.+.++.+ |++
T Consensus 68 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~ 145 (530)
T PRK15064 68 KLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGV--GIP 145 (530)
T ss_pred EEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhC--CCC
Confidence 99999988765 9999998753100 000 00000 0011122334433 232
Q ss_pred ccc-cCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEE
Q 041277 491 TQV-GERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIA 568 (1133)
Q Consensus 491 t~~-~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~ 568 (1133)
... .....+||||||||++|||||+.+|++|||||||++||+++.+.+.+.|.+ .+.|+|+|||+++.+.. ||+|+
T Consensus 146 ~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~~~d~i~ 223 (530)
T PRK15064 146 EEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLNSVCTHMA 223 (530)
T ss_pred hhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhcceEE
Confidence 211 234568999999999999999999999999999999999999999999864 47899999999999876 99999
Q ss_pred EEeCCeEE-eecCcchhcc
Q 041277 569 VVQDGQVM-ETGSHDELIQ 586 (1133)
Q Consensus 569 ~l~~G~i~-~~g~~~~l~~ 586 (1133)
+|++|+++ ..|++++.++
T Consensus 224 ~l~~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 224 DLDYGELRVYPGNYDEYMT 242 (530)
T ss_pred EEeCCEEEEecCCHHHHHH
Confidence 99999994 7787776653
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-46 Score=452.79 Aligned_cols=433 Identities=16% Similarity=0.154 Sum_probs=327.5
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 671 LNAPEWKQATLGCVGATLFGAVQPIY-AFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINIIQHYNFAYMGE 749 (1133)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 749 (1133)
+.+++++.+.++++++++..++.... +++...+++.... . .. . ...++++.++..++.+++.++..+.+.
T Consensus 7 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~-~----~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (547)
T PRK10522 7 VWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETADT-S----LL--V--LPEFLGLLLLLMAVTLGSQLALTTLGH 77 (547)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-c----ch--H--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666677777766666666553 4555555553211 0 00 0 111222233334566788888999999
Q ss_pred HHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 041277 750 HLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWRLALVMI 829 (1133)
Q Consensus 750 ~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~w~l~lv~l 829 (1133)
++..++|.++|++++++|++||+ ++++|++++|+++|++.++..+. .+..++..++.+++.++++++++|.++++++
T Consensus 78 ~~~~~lR~~l~~~ll~~~~~~~~--~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~~~l~~~~~~l~li~l 154 (547)
T PRK10522 78 HFVYRLRSEFIKRILDTHVERIE--QLGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGSAAYLAWLSPKMLLVTA 154 (547)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHh--ccCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 99999999999999999999998 57899999999999999998765 4677888888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhch---HHHHHHHHHHhhcHHHHHHHHHHHHH
Q 041277 830 AVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQ---HRILKMLEKAQQGPRRESIRQSWYAG 906 (1133)
Q Consensus 830 ~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e---~~~~~~~~~~~~~~~~~~~~~~~~~~ 906 (1133)
+.+|+.+++.++..++.++..++.++..++.++.+.|.++|+++++ ++.+ +.+.++|++..++..+...+..+...
T Consensus 155 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (547)
T PRK10522 155 IWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQEYRHHIIRADTFHL 233 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHH
Confidence 9999988887777777777778888889999999999999999995 5443 45678888888877766666555544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCCCC
Q 041277 907 IGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRYTKIE 986 (1133)
Q Consensus 907 ~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~ 986 (1133)
....+...+.....++.+++++.+ ..+ +.+.+..+..+......|+..+......++.+..+.+|+.++++.+++.+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~ 310 (547)
T PRK10522 234 SAVNWSNIMMLGAIGLVFYMANSL-GWA--DTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAE 310 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-hcC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 443333333333333333444332 122 23333333333444567899999999999999999999999875432211
Q ss_pred CCCCCCCCCCCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCc
Q 041277 987 PEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDR 1066 (1133)
Q Consensus 987 ~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~ 1066 (1133)
.++ ..+.+..+.|+|+||+|+||++ .++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+
T Consensus 311 --~~~-~~~~~~~~~i~~~~v~f~y~~~--~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~ 385 (547)
T PRK10522 311 --FPR-PQAFPDWQTLELRNVTFAYQDN--GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGK 385 (547)
T ss_pred --ccc-ccccCcCceEEEEEEEEEeCCC--CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCE
Confidence 111 1111123679999999999742 36899999999999999999999999999999999999999999999999
Q ss_pred ccCCCChhHHhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccc
Q 041277 1067 DIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEG 1130 (1133)
Q Consensus 1067 dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G 1130 (1133)
|+++++.+++|+++++|||||+||++||+|| + + +.++++++++++.+++++++.. |+|
T Consensus 386 ~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~-~-~~~~~~~~~~~~~~~l~~~~~~-~~~ 443 (547)
T PRK10522 386 PVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---G-K-PANPALVEKWLERLKMAHKLEL-EDG 443 (547)
T ss_pred ECCCCCHHHHhhheEEEecChhHHHHhhccc---c-C-chHHHHHHHHHHHcCCchhhhc-ccc
Confidence 9999999999999999999999999999999 3 2 4688899999999999988763 543
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-47 Score=461.40 Aligned_cols=208 Identities=25% Similarity=0.381 Sum_probs=165.4
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
-|+++|++++|++ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. .+|
T Consensus 6 ~l~i~~l~~~y~~--~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~-----------~~i 72 (556)
T PRK11819 6 IYTMNRVSKVVPP--KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG-----------IKV 72 (556)
T ss_pred EEEEeeEEEEeCC--CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEE
Confidence 4899999999972 135999999999999999999999999999999999999999999999752 369
Q ss_pred eEEecCCCCccc-cHHHHHhcCCCCC----------------C----------HHHHHHHHHHh-------chHHHHHhC
Q 041277 440 GLVSQEPALFAT-SIKENILFGKEDA----------------S----------MEEVIEAAKAS-------NAHNFIRQL 485 (1133)
Q Consensus 440 ~~v~Q~~~l~~~-ti~eni~~~~~~~----------------~----------~~~~~~~~~~~-------~~~~~i~~l 485 (1133)
|||+|+|.+++. |++||+.++.... . ..++.+.++.+ .+.+.++.+
T Consensus 73 ~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 152 (556)
T PRK11819 73 GYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL 152 (556)
T ss_pred EEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC
Confidence 999999999865 9999998753100 0 00111111111 122233332
Q ss_pred CCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-C
Q 041277 486 PQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-A 564 (1133)
Q Consensus 486 ~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~ 564 (1133)
|++ .......+||||||||++||||++.+|++|||||||++||+.+...+.+.|++.. .|+|+|||+++.+.. |
T Consensus 153 --gl~-~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~--~tviiisHd~~~~~~~~ 227 (556)
T PRK11819 153 --RCP-PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP--GTVVAVTHDRYFLDNVA 227 (556)
T ss_pred --CCC-cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC--CeEEEEeCCHHHHHhhc
Confidence 221 1344567899999999999999999999999999999999999999999998763 599999999999876 9
Q ss_pred CEEEEEeCCeEE-eecCcchhc
Q 041277 565 DVIAVVQDGQVM-ETGSHDELI 585 (1133)
Q Consensus 565 d~i~~l~~G~i~-~~g~~~~l~ 585 (1133)
|+|++|++|+++ ..|++++..
T Consensus 228 d~i~~l~~g~i~~~~g~~~~~~ 249 (556)
T PRK11819 228 GWILELDRGRGIPWEGNYSSWL 249 (556)
T ss_pred CeEEEEeCCEEEEecCCHHHHH
Confidence 999999999986 667666554
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-47 Score=409.30 Aligned_cols=229 Identities=29% Similarity=0.443 Sum_probs=185.8
Q ss_pred cEEEEEEEEEcCCC-CCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCC-----CccEEEECCeecCCCCHH
Q 041277 360 EVEFKCVQFAYPSR-PESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP-----LGGEIILDGVSIDKLQLK 433 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~-~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~-----~~G~i~~~g~~~~~~~~~ 433 (1133)
-++++|++..|... ....++++|||+|++||++||||.||||||-..+.++|+++- -+|+|.++|.|+-..+..
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~ 85 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence 47888988888522 235689999999999999999999999999999999999865 369999999999998888
Q ss_pred HHhh----hceEEecCCC--Cccc-cH----HHHHhcCCC---CCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCC
Q 041277 434 WLRS----QMGLVSQEPA--LFAT-SI----KENILFGKE---DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQ 499 (1133)
Q Consensus 434 ~~r~----~i~~v~Q~~~--l~~~-ti----~eni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~ 499 (1133)
.+|+ +|+++||||. |-+- || .|-|.+... ....+++.+.++.+++.+-- ..+...+.+
T Consensus 86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~--------~rl~~yPHe 157 (534)
T COG4172 86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPE--------KRLDAYPHE 157 (534)
T ss_pred HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchh--------hhhhhCCcc
Confidence 7774 7999999995 2222 54 444544321 22345666777777664421 122334569
Q ss_pred CChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEE
Q 041277 500 MSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVM 576 (1133)
Q Consensus 500 LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~ 576 (1133)
|||||||||.||.||+.+|++||.||||.|||...+.+|.+.|+++. .|..+++|||++..++. ||||+||.+|+++
T Consensus 158 LSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~iv 237 (534)
T COG4172 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIV 237 (534)
T ss_pred cCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEe
Confidence 99999999999999999999999999999999999999999999875 48999999999999987 9999999999999
Q ss_pred eecCcchhccccchhhHHHH
Q 041277 577 ETGSHDELIQAESGLYTSLV 596 (1133)
Q Consensus 577 ~~g~~~~l~~~~~~~~~~~~ 596 (1133)
|+|+.+++...+...|.+..
T Consensus 238 E~~~t~~lF~~PqHpYTr~L 257 (534)
T COG4172 238 ETGTTETLFAAPQHPYTRKL 257 (534)
T ss_pred ecCcHHHHhhCCCChHHHHH
Confidence 99998888876666666543
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-45 Score=453.96 Aligned_cols=453 Identities=12% Similarity=0.082 Sum_probs=369.9
Q ss_pred HHHHHHHhhccchH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHHHHHHH
Q 041277 664 SFRRLVALNAPEWK-----QATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINI 738 (1133)
Q Consensus 664 ~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (1133)
.+++++++.+|+|+ .+++.+++.++..++....+++.+.+++.....+..........+.++++++.++..+..+
T Consensus 78 ~~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~~ 157 (659)
T TIGR00954 78 KLDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIKY 157 (659)
T ss_pred HHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888886 4666677777778888888999999988765433221211123344445556666777778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 041277 739 IQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGL 818 (1133)
Q Consensus 739 ~~~~~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~ 818 (1133)
+..++......++..++|++.+++....++.|||. ++|++++|+++|++.+.+.+...+..++..++.+++.++.++
T Consensus 158 ~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~---~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~ 234 (659)
T TIGR00954 158 LLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS---RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLL 234 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC---CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888999999999999999999999999982 689999999999999999999999999999999998888777
Q ss_pred H-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHH
Q 041277 819 F-IAWRLALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRE 897 (1133)
Q Consensus 819 ~-~~w~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~ 897 (1133)
. ++|.+++++++.+|+..++..++.+..++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|++..++..+.
T Consensus 235 ~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~ 314 (659)
T TIGR00954 235 TALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEH 314 (659)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 6 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHh-c----CCCCHHHHHH-HHHH---HHHHHHHHHHHHHhHHHHH
Q 041277 898 SIRQSWYAGIGLAFSQSLASCT--WALDFWYGGRLIA-D----GYISSKALFE-TFMI---LVSTGRVIADAGSMTTDIA 966 (1133)
Q Consensus 898 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~l~~-~----g~~t~g~l~~-~~~~---~~~~~~~~~~~~~~~~~~~ 966 (1133)
..+..++.+...++..++.... ..+.++.|...+. . |.+|.|.+++ ++.+ +.....|+..+.....+++
T Consensus 315 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~ 394 (659)
T TIGR00954 315 LNLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMT 394 (659)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888888888887776532 2222333342332 2 7899888766 4444 4456788999999999999
Q ss_pred HHHHHHHHHHHHhccCCCCCC------CCCC--C--------------CCCCCCcccEEEEeEEEECCCCCCCccccCcc
Q 041277 967 KGSDAVGSVFAVMDRYTKIEP------EDPE--G--------------HQPERITGNIELQNVHFAYPARPDVMIFEGFS 1024 (1133)
Q Consensus 967 ~~~~s~~ri~~~l~~~~~~~~------~~~~--~--------------~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~is 1024 (1133)
++..+.+|++++++..++... +.++ + .......+.|+|+||+|+||++ .++|+|+|
T Consensus 395 ~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~--~~il~~is 472 (659)
T TIGR00954 395 RLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG--DVLIESLS 472 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC--Ceeeecce
Confidence 999999999999975432210 0000 0 0011134679999999999742 35899999
Q ss_pred EEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcccccccccccccccHHHHhccCCC-
Q 041277 1025 IKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGAS- 1103 (1133)
Q Consensus 1025 l~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~- 1103 (1133)
|+|++||++|||||||||||||+++|.|+|+|++|+|.+|+ |+++++|||+|++|++|++|||.++..
T Consensus 473 l~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~ 541 (659)
T TIGR00954 473 FEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSS 541 (659)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCCh
Confidence 99999999999999999999999999999999999999874 678999999999999999999998741
Q ss_pred -----CCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1104 -----DEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1104 -----~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
...++++++++++.+++++++++ |.||||
T Consensus 542 ~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~ 575 (659)
T TIGR00954 542 EDMKRRGLSDKDLEQILDNVQLTHILER-EGGWSA 575 (659)
T ss_pred hhhhccCCCHHHHHHHHHHcCCHHHHhh-cCCccc
Confidence 23578899999999999999988 999886
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-46 Score=490.00 Aligned_cols=207 Identities=25% Similarity=0.385 Sum_probs=167.3
Q ss_pred CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCC---ccEEEECCeecCCCCHHHHhhhceEEecCCCCcc-c
Q 041277 376 SIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPL---GGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFA-T 451 (1133)
Q Consensus 376 ~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~---~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~-~ 451 (1133)
+.+|+|+|++++|||+++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... |+.++||+|++.++. .
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVP---RKTSAYISQNDVHVGVM 254 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcc---cceeEEecccccCCCcC
Confidence 45899999999999999999999999999999999999998 9999999999865532 678999999988876 4
Q ss_pred cHHHHHhcCCC----C--------CCHH----------HH---HHHHHHhc------hHHHHHh--CCCcccccccCC-C
Q 041277 452 SIKENILFGKE----D--------ASME----------EV---IEAAKASN------AHNFIRQ--LPQQYDTQVGER-G 497 (1133)
Q Consensus 452 ti~eni~~~~~----~--------~~~~----------~~---~~~~~~~~------~~~~i~~--l~~g~~t~~~~~-g 497 (1133)
||+||+.|+.. . .+.+ ++ .+++...+ .++.++. +.+-.||.+|+. .
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~ 334 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMI 334 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccc
Confidence 99999988421 0 0011 11 11111100 1223333 344457888764 4
Q ss_pred CCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcc-hh-hcCCEEEEEeCC
Q 041277 498 VQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLS-TI-RNADVIAVVQDG 573 (1133)
Q Consensus 498 ~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~-~~-~~~d~i~~l~~G 573 (1133)
..||||||||++|||+++.+|++++|||||++||+.+...+.+.|+++. .|+|+|+++|++. .+ ..+|+|++|++|
T Consensus 335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G 414 (1470)
T PLN03140 335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEG 414 (1470)
T ss_pred cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCc
Confidence 6899999999999999999999999999999999999999999999874 4899999999974 44 459999999999
Q ss_pred eEEeecCcchhc
Q 041277 574 QVMETGSHDELI 585 (1133)
Q Consensus 574 ~i~~~g~~~~l~ 585 (1133)
+++..|+.+++.
T Consensus 415 ~ivy~G~~~~~~ 426 (1470)
T PLN03140 415 QIVYQGPRDHIL 426 (1470)
T ss_pred eEEEeCCHHHHH
Confidence 999999998875
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-45 Score=405.60 Aligned_cols=439 Identities=20% Similarity=0.250 Sum_probs=364.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 679 ATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINIIQHYNFAYMGEHLTKRIRER 758 (1133)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~ 758 (1133)
+....+++.+..++....++++-++.|-...+.+ .........+.+++.++..++.+++...+.+++.++...|+.+
T Consensus 25 ~~~v~lfS~~INiL~L~~~lyMLQVyDRVL~S~s---~~TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~ 101 (580)
T COG4618 25 FIGVGLFSAVINLLALTGPLYMLQVYDRVLPSRS---VPTLVMLTVLALGLYAFQGLLDAIRSRVLVRIGERLDRQLNGP 101 (580)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhhhccCCC---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 3333444555566666667777676665443221 1222233344556667778899999999999999999999999
Q ss_pred HHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 041277 759 MLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDR-TALLVQTISAVTIAFTMGLFIAWRLALVMIAVQPLVII 837 (1133)
Q Consensus 759 l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~w~l~lv~l~~~pl~~~ 837 (1133)
+|....++|..- +..|+=..-+ +|.++++++++.. +..++..-.+.+ -+.++|.++++++++.++...+++.
T Consensus 102 v~~a~~~~~l~~-----~~~g~~~Q~L-rDL~qvR~Fltg~g~~A~fDaPW~P~-yl~v~fl~Hp~lG~~a~~ga~iLv~ 174 (580)
T COG4618 102 VFAASFSAPLLR-----RGSGDGLQPL-RDLDQVRQFLTGTGLTAFFDAPWMPL-YLAVIFLFHPWLGLIALAGAIILVV 174 (580)
T ss_pred HHHHHHhhHHhh-----cCCCccccch-hhHHHHHHHHcCCCcchhcCCchHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998877663 3445444444 6999999998774 333444333333 3445677899999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 838 CFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSWYAGIGLAFSQSLAS 917 (1133)
Q Consensus 838 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 917 (1133)
+.++..+..++..++..+.....+.+...+..+.++|++.|+.....++|.+....+.....+..-..+.+.+++..+-.
T Consensus 175 la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm 254 (580)
T COG4618 175 LALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRM 254 (580)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 88888888888777888888888999999999999999999999999999999999988888888888888888888889
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCC
Q 041277 918 CTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRYTKIEPEDPEGHQPER 997 (1133)
Q Consensus 918 ~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~ 997 (1133)
.....++.+|+||+..|++|.|.+++....+.....|+..+...|..+..+..+..|+.+++...|... +..+.|.
T Consensus 255 ~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~----~~m~LP~ 330 (580)
T COG4618 255 ALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAA----ERMPLPA 330 (580)
T ss_pred HHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc----CCCCCCC
Confidence 999999999999999999999999999888889999999999999999999999999999998665432 1233345
Q ss_pred CcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHh
Q 041277 998 ITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLR 1077 (1133)
Q Consensus 998 ~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR 1077 (1133)
.+|.+..++|++.=|+. +.|+|+|+||+++|||-+|||||||||||||+++|.|.+.|.+|.|++||-|+++.+.++|=
T Consensus 331 P~g~L~Ve~l~~~PPg~-~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG 409 (580)
T COG4618 331 PQGALSVERLTAAPPGQ-KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLG 409 (580)
T ss_pred CCceeeEeeeeecCCCC-CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhc
Confidence 57999999999976643 56899999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1078 RHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1078 ~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
++|||.|||..||+|||+|||+=..+ +.++|.|.+|++.|+.||.|.+||+||||
T Consensus 410 ~hiGYLPQdVeLF~GTIaeNIaRf~~-~~d~~kIieAA~lAgvHelIl~lP~GYdT 464 (580)
T COG4618 410 RHIGYLPQDVELFDGTIAENIARFGE-EADPEKVIEAARLAGVHELILRLPQGYDT 464 (580)
T ss_pred cccCcCcccceecCCcHHHHHHhccc-cCCHHHHHHHHHHcChHHHHHhCcCCccC
Confidence 99999999999999999999953323 57888999999999999999999999998
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-46 Score=456.29 Aligned_cols=208 Identities=26% Similarity=0.396 Sum_probs=167.4
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
-++++|++++|++ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +.+|
T Consensus 4 ~i~~~nls~~~~~--~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i 70 (552)
T TIGR03719 4 IYTMNRVSKVVPP--KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKV 70 (552)
T ss_pred EEEEeeEEEecCC--CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence 4889999999972 23589999999999999999999999999999999999999999999975 2369
Q ss_pred eEEecCCCCccc-cHHHHHhcCCCC------------------CC--------HHHHHHHHHHhchH-------HHHHhC
Q 041277 440 GLVSQEPALFAT-SIKENILFGKED------------------AS--------MEEVIEAAKASNAH-------NFIRQL 485 (1133)
Q Consensus 440 ~~v~Q~~~l~~~-ti~eni~~~~~~------------------~~--------~~~~~~~~~~~~~~-------~~i~~l 485 (1133)
|||+|+|.+++. |++||+.++... .. ..++.++++.++.+ +.++.+
T Consensus 71 ~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 150 (552)
T TIGR03719 71 GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL 150 (552)
T ss_pred EEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC
Confidence 999999998864 999999875310 00 11233333333322 223332
Q ss_pred CCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-C
Q 041277 486 PQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-A 564 (1133)
Q Consensus 486 ~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~ 564 (1133)
|++ .......+||||||||++||||++.+|++|||||||++||+.+.+.+.+.|++. +.|+|+|||+++.+.. |
T Consensus 151 --~l~-~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~--~~tvIiisHd~~~~~~~~ 225 (552)
T TIGR03719 151 --RCP-PWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--PGTVVAVTHDRYFLDNVA 225 (552)
T ss_pred --CCC-cccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhc
Confidence 221 124456789999999999999999999999999999999999999999999876 3699999999999876 9
Q ss_pred CEEEEEeCCeEE-eecCcchhc
Q 041277 565 DVIAVVQDGQVM-ETGSHDELI 585 (1133)
Q Consensus 565 d~i~~l~~G~i~-~~g~~~~l~ 585 (1133)
|+|++|++|+++ ..|++++..
T Consensus 226 d~v~~l~~g~i~~~~g~~~~~~ 247 (552)
T TIGR03719 226 GWILELDRGRGIPWEGNYSSWL 247 (552)
T ss_pred CeEEEEECCEEEEecCCHHHHH
Confidence 999999999976 567666554
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-44 Score=384.41 Aligned_cols=469 Identities=21% Similarity=0.257 Sum_probs=361.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHH
Q 041277 87 LYLALGSWVACFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMN 166 (1133)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~ 166 (1133)
.++.++..+.+.+........++++..++|.++.++++..|+.-+++ . ++++++.++++|+..|. +-...++.+.++
T Consensus 55 ~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier-~-~~~rlla~L~~Dvr~IS-f~~s~lp~~~qa 131 (546)
T COG4615 55 LGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIER-L-GSARLLAGLTSDVRNIS-FAFSRLPELVQA 131 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH-h-cccchhhhhccccccee-ehHhhhHHHHHH
Confidence 33344445566677777888899999999999999999999999996 7 99999999999999998 444567888999
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHH--HH
Q 041277 167 ASLFFGCYLVAFLMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESK--TI 244 (1133)
Q Consensus 167 ~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~--~~ 244 (1133)
....+++.+.+.++++++.++.++++.+.++...+...+..+.....++..+++.+..+-.+.|.+..+....-.+ ..
T Consensus 132 ~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~ 211 (546)
T COG4615 132 IILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHN 211 (546)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHh
Confidence 9999999999999999999999988888888888888888888899999999999999999999999988643322 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 245 NEFSSALQGSVQLGLKQGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKY 323 (1133)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (1133)
+.|....++.++.............. .+++.+....+++|+.... +--+.....++.+.+++...|+.++...++.
T Consensus 212 ~~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~lal~~---~w~st~~a~tivlvlLflr~pL~s~vgilP~ 288 (546)
T COG4615 212 NLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALSL---GWASTNVAATIVLVLLFLRTPLLSAVGILPT 288 (546)
T ss_pred hhcCcchHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ccchhhHHHHHHHHHHHHhhHHHHHHhhhhH
Confidence 33333333333322222111111111 3344444444555554322 1122233444555666777899999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCCCcccccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHH
Q 041277 324 FSEAMAAGERIMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKS 403 (1133)
Q Consensus 324 ~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKS 403 (1133)
+..|.+|++||.++-..++..+ . ......++ -..|+++||.|+|+... .-+..||++|++||++-|+|.||||||
T Consensus 289 l~~AqvA~~kiakle~~~~~a~-~-~~~q~~p~-~~~lelrnvrfay~~~~--FhvgPiNl~ikrGelvFliG~NGsGKS 363 (546)
T COG4615 289 LLTAQVAFNKIAKLELAPYKAD-F-PRPQAFPD-WKTLELRNVRFAYQDNA--FHVGPINLTIKRGELVFLIGGNGSGKS 363 (546)
T ss_pred HHHHHHHHHHHHHhhcCCcccc-C-CCCCcCCc-ccceeeeeeeeccCccc--ceecceeeEEecCcEEEEECCCCCcHH
Confidence 9999999999998755332221 1 11112222 34699999999998542 458899999999999999999999999
Q ss_pred HHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCC-CCHHHHHHHHHHhchHHHH
Q 041277 404 TVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKED-ASMEEVIEAAKASNAHNFI 482 (1133)
Q Consensus 404 Tll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~-~~~~~~~~~~~~~~~~~~i 482 (1133)
|++++|.|+|.|++|+|++||.+++.-+++++|+-++-|+-|-+||+.++ |.+. ++.+.+...++...+....
T Consensus 364 T~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll------~~e~~as~q~i~~~LqrLel~~kt 437 (546)
T COG4615 364 TLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------GPEGKASPQLIEKWLQRLELAHKT 437 (546)
T ss_pred HHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh------CCccCCChHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999998765 3333 5666666665555443322
Q ss_pred HhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcch
Q 041277 483 RQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLST 560 (1133)
Q Consensus 483 ~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~ 560 (1133)
++.+|--+ ...||-|||+|+|+--|++-+.||+++||=-+--||.-++.+.+.+.... .|||++.||||-..
T Consensus 438 -sl~d~~fs-----~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~Y 511 (546)
T COG4615 438 -SLNDGRFS-----NLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHY 511 (546)
T ss_pred -cccCCccc-----ccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchh
Confidence 22222111 24799999999999999999999999999999999999998888776543 59999999999999
Q ss_pred hhcCCEEEEEeCCeEEee
Q 041277 561 IRNADVIAVVQDGQVMET 578 (1133)
Q Consensus 561 ~~~~d~i~~l~~G~i~~~ 578 (1133)
...|||++.|++|+++|.
T Consensus 512 F~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 512 FIHADRLLEMRNGQLSEL 529 (546)
T ss_pred hhhHHHHHHHhcCceeec
Confidence 999999999999999875
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-47 Score=387.34 Aligned_cols=225 Identities=33% Similarity=0.550 Sum_probs=195.6
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHH---HH
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLK---WL 435 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~---~~ 435 (1133)
..|++++|+++|+++ .|++|+||+|++||+++|+||||||||||+++|.|+.+|++|+|.++|+|+.+++.+ .+
T Consensus 7 ~~I~vr~v~~~fG~~---~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~i 83 (263)
T COG1127 7 PLIEVRGVTKSFGDR---VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEI 83 (263)
T ss_pred ceEEEeeeeeecCCE---EEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHH
Confidence 469999999999754 499999999999999999999999999999999999999999999999999988764 56
Q ss_pred hhhceEEecCCCCccc-cHHHHHhcCCCC---CCHHH----HHHHHHHhchHHH-HHhCCCcccccccCCCCCCChHHHH
Q 041277 436 RSQMGLVSQEPALFAT-SIKENILFGKED---ASMEE----VIEAAKASNAHNF-IRQLPQQYDTQVGERGVQMSGGQKQ 506 (1133)
Q Consensus 436 r~~i~~v~Q~~~l~~~-ti~eni~~~~~~---~~~~~----~~~~~~~~~~~~~-i~~l~~g~~t~~~~~g~~LSgGqkq 506 (1133)
|+++|+++|...||+. ||+||+.|...+ ..++. +...++.+|+... .+.+| .+||||+++
T Consensus 84 r~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----------sELSGGM~K 152 (263)
T COG1127 84 RKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-----------SELSGGMRK 152 (263)
T ss_pred HhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----------hhhcchHHH
Confidence 8999999999999976 999999996432 22333 3344566676665 55555 589999999
Q ss_pred HHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcch
Q 041277 507 RIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDE 583 (1133)
Q Consensus 507 ri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 583 (1133)
|+|||||++.||+|+++|||||+|||.+...+.+.|+++.+ +.|+++|||+++++.. |||++++.||+|+.+|+++|
T Consensus 153 RvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~e 232 (263)
T COG1127 153 RVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEE 232 (263)
T ss_pred HHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHH
Confidence 99999999999999999999999999999999999988754 8999999999999876 89999999999999999999
Q ss_pred hccccchhhHHHHH
Q 041277 584 LIQAESGLYTSLVR 597 (1133)
Q Consensus 584 l~~~~~~~~~~~~~ 597 (1133)
+.+..+...++++.
T Consensus 233 l~~sd~P~v~qf~~ 246 (263)
T COG1127 233 LLASDDPWVRQFFN 246 (263)
T ss_pred HHhCCCHHHHHHhc
Confidence 99855555555443
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-47 Score=402.97 Aligned_cols=213 Identities=33% Similarity=0.533 Sum_probs=192.7
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.++++|++|+|+++ ++|+|+||++++||+++|+||||||||||+++|+|+.+|.+|+|.+||+++.+++.+++.+++
T Consensus 2 ~L~~~~ls~~y~~~---~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYGGK---PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEECCe---eEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 37899999999844 599999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCCC-ccccHHHHHhcCCCC----------CCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHH
Q 041277 440 GLVSQEPAL-FATSIKENILFGKED----------ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRI 508 (1133)
Q Consensus 440 ~~v~Q~~~l-~~~ti~eni~~~~~~----------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 508 (1133)
|||||++.. |.-||+|-+.+|+.. .+.+.+.++++..++.++.++. -.+||||||||+
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~-----------~~~LSGGerQrv 147 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRP-----------VDELSGGERQRV 147 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCc-----------ccccChhHHHHH
Confidence 999999754 566999999998631 1233577889999988876653 247999999999
Q ss_pred HHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchh-hcCCEEEEEeCCeEEeecCcchhc
Q 041277 509 AIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTI-RNADVIAVVQDGQVMETGSHDELI 585 (1133)
Q Consensus 509 ~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~-~~~d~i~~l~~G~i~~~g~~~~l~ 585 (1133)
.|||||+++|+||+||||||+||..++.++++.++++. +|+|+|+|.|+++.+ +.||++++|++|+++.+|+++|++
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999999999999999999999999999999875 489999999999876 569999999999999999999998
Q ss_pred c
Q 041277 586 Q 586 (1133)
Q Consensus 586 ~ 586 (1133)
.
T Consensus 228 T 228 (258)
T COG1120 228 T 228 (258)
T ss_pred C
Confidence 7
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-47 Score=425.80 Aligned_cols=222 Identities=29% Similarity=0.444 Sum_probs=194.2
Q ss_pred cccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccC-----CCccEEEECCeecCC--C
Q 041277 358 LGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYA-----PLGGEIILDGVSIDK--L 430 (1133)
Q Consensus 358 ~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~-----~~~G~i~~~g~~~~~--~ 430 (1133)
.+.|+++|++++|++. .+++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.+||+++.. .
T Consensus 78 ~~~i~~~nls~~y~~~-~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~ 156 (329)
T PRK14257 78 ANVFEIRNFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI 156 (329)
T ss_pred CceEEEEeeEEEecCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 4679999999999643 3469999999999999999999999999999999999996 579999999999974 4
Q ss_pred CHHHHhhhceEEecCCCCccccHHHHHhcCCC--CCCHHH-----HHHHHHHhchHHHHHhCCCcccccccCCCCCCChH
Q 041277 431 QLKWLRSQMGLVSQEPALFATSIKENILFGKE--DASMEE-----VIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGG 503 (1133)
Q Consensus 431 ~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~--~~~~~~-----~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG 503 (1133)
+...+|+.++||||+|++|++|++|||.|+.. ..++++ +.++++.+++ ++++++.++++|.+||||
T Consensus 157 ~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L-------~~~l~~~~~~~~~~LSgG 229 (329)
T PRK14257 157 SSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAAL-------WDEVKDDLDKAGNALSGG 229 (329)
T ss_pred chHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCC-------cchhhhhhhCCcccCCHH
Confidence 45678899999999999999999999998642 123333 3344444443 445567889999999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcc
Q 041277 504 QKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHD 582 (1133)
Q Consensus 504 qkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 582 (1133)
||||++||||++++|+|||||||||+||+++.+.+++.|+++.+++|+|+|||+++++.. ||||++|++|+|++.|+++
T Consensus 230 qkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~ 309 (329)
T PRK14257 230 QQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETK 309 (329)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999988888999999999999987 9999999999999999999
Q ss_pred hhccc
Q 041277 583 ELIQA 587 (1133)
Q Consensus 583 ~l~~~ 587 (1133)
++...
T Consensus 310 ~l~~~ 314 (329)
T PRK14257 310 TIFIH 314 (329)
T ss_pred HHhcC
Confidence 99763
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-47 Score=367.95 Aligned_cols=208 Identities=31% Similarity=0.529 Sum_probs=188.2
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHH---HHhh
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLK---WLRS 437 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~---~~r~ 437 (1133)
|+|+||++.|++. +++|+|+||+|++||++-++||||||||||+++|++...|+.|+|.++|+|+..+..+ .+|+
T Consensus 2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 7899999999865 4699999999999999999999999999999999999999999999999999887644 5899
Q ss_pred hceEEecCCCCccc-cHHHHHhcCCC------CCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHH
Q 041277 438 QMGLVSQEPALFAT-SIKENILFGKE------DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAI 510 (1133)
Q Consensus 438 ~i~~v~Q~~~l~~~-ti~eni~~~~~------~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~i 510 (1133)
+||+|+||..|... ||+||++|... ..-.+++.++++.+++.+-...+|. +||||||||++|
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~-----------~LSGGEQQRvaI 148 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS-----------QLSGGEQQRVAI 148 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc-----------ccCchHHHHHHH
Confidence 99999999988765 99999998643 1224678899999999999999984 899999999999
Q ss_pred HHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCc
Q 041277 511 ARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSH 581 (1133)
Q Consensus 511 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~ 581 (1133)
|||++.+|++||.||||.+|||+....|++.+.+.. .|.||++.||+.+.+.. --|++.+++|+++....+
T Consensus 149 ARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~~ 221 (223)
T COG2884 149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESR 221 (223)
T ss_pred HHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecccc
Confidence 999999999999999999999999999999999874 59999999999999987 579999999999876543
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-46 Score=412.47 Aligned_cols=216 Identities=35% Similarity=0.549 Sum_probs=196.0
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.|+++||+++|++.. +++|+||+|++||+++|+|||||||||+|++|+|+.+|++|+|.|+|.+++++++++ +.|
T Consensus 3 ~i~l~~v~K~yg~~~---~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~i 77 (338)
T COG3839 3 ELELKNVRKSFGSFE---VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGI 77 (338)
T ss_pred EEEEeeeEEEcCCce---eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCE
Confidence 589999999997532 899999999999999999999999999999999999999999999999999998875 689
Q ss_pred eEEecCCCCccc-cHHHHHhcCCCCC------CHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHH
Q 041277 440 GLVSQEPALFAT-SIKENILFGKEDA------SMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIAR 512 (1133)
Q Consensus 440 ~~v~Q~~~l~~~-ti~eni~~~~~~~------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iAR 512 (1133)
|+|||+..||+- ||+|||.||.... .++++.++++..++.+.+++.| .+|||||||||||||
T Consensus 78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P-----------~~LSGGQrQRVAlaR 146 (338)
T COG3839 78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP-----------LQLSGGQRQRVALAR 146 (338)
T ss_pred EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc-----------ccCChhhHHHHHHHH
Confidence 999999999965 9999999986532 2567889999999999999888 489999999999999
Q ss_pred HHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhccccc
Q 041277 513 AIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQAES 589 (1133)
Q Consensus 513 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 589 (1133)
||+++|+++|||||+|+||++.+..+...|+++.+ +.|+|.||||...+.. +|||.||++|+|.+.|++.|+.+++.
T Consensus 147 AlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~ 226 (338)
T COG3839 147 ALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPA 226 (338)
T ss_pred HHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCcc
Confidence 99999999999999999999999999998888653 7899999999987765 99999999999999999999986544
Q ss_pred hh
Q 041277 590 GL 591 (1133)
Q Consensus 590 ~~ 591 (1133)
..
T Consensus 227 n~ 228 (338)
T COG3839 227 NL 228 (338)
T ss_pred ch
Confidence 33
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-46 Score=388.24 Aligned_cols=195 Identities=31% Similarity=0.503 Sum_probs=174.9
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.+++++|+++|+. ..+|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.++... ...+
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~ 74 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDI 74 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCE
Confidence 4789999999985 3599999999999999999999999999999999999999999999999988443 2479
Q ss_pred eEEecCCCCccc-cHHHHHhcCCCCC------CHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHH
Q 041277 440 GLVSQEPALFAT-SIKENILFGKEDA------SMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIAR 512 (1133)
Q Consensus 440 ~~v~Q~~~l~~~-ti~eni~~~~~~~------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iAR 512 (1133)
+||+|++.||+- ||+||+.++.+.. ..+.+.+.++.+++.+|-++.|. +||||||||+||||
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~-----------qLSGGMrQRVaiAR 143 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPH-----------QLSGGMRQRVAIAR 143 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCcc-----------ccChHHHHHHHHHH
Confidence 999999999986 9999999986532 23457788888999888888884 89999999999999
Q ss_pred HHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCC
Q 041277 513 AIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDG 573 (1133)
Q Consensus 513 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G 573 (1133)
||+.+|++||||||++|||+.|+..+++.+.++. .++|+++|||+++.+-. +|||++|.++
T Consensus 144 AL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 144 ALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred HHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 9999999999999999999999999999998864 47999999999998765 9999999994
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-46 Score=404.97 Aligned_cols=235 Identities=51% Similarity=0.843 Sum_probs=214.2
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
|+++|++++|+.. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 4789999999642 245899999999999999999999999999999999999999999999999998777778888999
Q ss_pred EEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCE
Q 041277 441 LVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRI 520 (1133)
Q Consensus 441 ~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~i 520 (1133)
|++|++++|+.|++||+.++.+....+++.++++..++.++++.+|.|+++.....+.+||||||||++||||++.+|++
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 99999999999999999987554456667777888889999999999999999999999999999999999999999999
Q ss_pred EEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhccccchhhHHHHH
Q 041277 521 LLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVR 597 (1133)
Q Consensus 521 lllDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 597 (1133)
+||||||++||+.+++.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|+++++++ ..+.|+.+++
T Consensus 160 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~-~~~~~~~~~~ 235 (237)
T cd03252 160 LIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLA-ENGLYAYLYQ 235 (237)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHh-ccChHHHHHh
Confidence 999999999999999999999998877899999999999997899999999999999999999987 4677777653
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-46 Score=359.57 Aligned_cols=209 Identities=33% Similarity=0.561 Sum_probs=188.3
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
|.+++|.|+|+..+ -.++++|++||++||+||||||||||+++|+||..|.+|+|.|+|+|....++. ++-++
T Consensus 2 l~L~~V~~~y~~~~-----~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVS 74 (231)
T COG3840 2 LALDDVRFSYGHLP-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVS 74 (231)
T ss_pred ccccceEEeeCcce-----EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChh
Confidence 56789999997532 368899999999999999999999999999999999999999999999877664 35699
Q ss_pred EEecCCCCccc-cHHHHHhcCCCC------CCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHH
Q 041277 441 LVSQEPALFAT-SIKENILFGKED------ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARA 513 (1133)
Q Consensus 441 ~v~Q~~~l~~~-ti~eni~~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa 513 (1133)
+++||..||.- ||.+||.+|... ...+++..++..+|+.++.+++|. +||||||||+||||+
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARc 143 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARC 143 (231)
T ss_pred hhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHH
Confidence 99999999965 999999998641 235678899999999999999995 899999999999999
Q ss_pred HhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhccc
Q 041277 514 IIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQA 587 (1133)
Q Consensus 514 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 587 (1133)
|+++-||++||||+|+|||.-+.++...+.++. ++.|++||||+++.+.. +|+++++++|||.++|+.+++...
T Consensus 144 lvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~ 220 (231)
T COG3840 144 LVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSG 220 (231)
T ss_pred HhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhcc
Confidence 999999999999999999999999999888764 58899999999999876 999999999999999999998763
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-46 Score=377.38 Aligned_cols=213 Identities=35% Similarity=0.559 Sum_probs=188.2
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCC---HHHHh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQ---LKWLR 436 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~---~~~~r 436 (1133)
.|+++||+..||+. +.+|+||||+|++||+++|+||||||||||+++|.|+.+|++|+|.++|.++..++ .+.+|
T Consensus 3 ~i~~~nl~k~yp~~--~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPGG--HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCCC--ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 48999999999853 46999999999999999999999999999999999999999999999999998887 45677
Q ss_pred hhceEEecCCCCccc-cHHHHHhcCCCCC--------------CHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCC
Q 041277 437 SQMGLVSQEPALFAT-SIKENILFGKEDA--------------SMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMS 501 (1133)
Q Consensus 437 ~~i~~v~Q~~~l~~~-ti~eni~~~~~~~--------------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LS 501 (1133)
++||+++|++.|.+. ||.+|++.|+-.. ......++++.+++.+.... +..+||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~q-----------ra~~LS 149 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQ-----------RASTLS 149 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHH-----------HhccCC
Confidence 899999999999876 9999999875321 23345667777777665433 346899
Q ss_pred hHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEee
Q 041277 502 GGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMET 578 (1133)
Q Consensus 502 gGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~ 578 (1133)
|||+|||+|||||+++|+|+|.|||+|+|||.+.+.+++.|++.. .|.|+|+.-|+++.++. ||||+-|++|+|+.+
T Consensus 150 GGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfD 229 (258)
T COG3638 150 GGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFD 229 (258)
T ss_pred cchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEe
Confidence 999999999999999999999999999999999999999999864 58999999999999875 999999999999999
Q ss_pred cCcchhc
Q 041277 579 GSHDELI 585 (1133)
Q Consensus 579 g~~~~l~ 585 (1133)
|+.+|+-
T Consensus 230 g~~~el~ 236 (258)
T COG3638 230 GPASELT 236 (258)
T ss_pred CChhhhh
Confidence 9999964
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-45 Score=382.93 Aligned_cols=205 Identities=36% Similarity=0.520 Sum_probs=175.0
Q ss_pred EEEEEEEEEcCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHH---H-
Q 041277 361 VEFKCVQFAYPSRP-ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKW---L- 435 (1133)
Q Consensus 361 i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~---~- 435 (1133)
++++||++.|.... ...+|+++||+|++||+++|+|||||||||||++|.|+..|++|+|.++|.|+..++.+. +
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 57899999996432 246899999999999999999999999999999999999999999999999999887543 3
Q ss_pred hhhceEEecCCCCccc-cHHHHHhcC----CCCC--CHHHHHHHHHHhchHHHHH-hCCCcccccccCCCCCCChHHHHH
Q 041277 436 RSQMGLVSQEPALFAT-SIKENILFG----KEDA--SMEEVIEAAKASNAHNFIR-QLPQQYDTQVGERGVQMSGGQKQR 507 (1133)
Q Consensus 436 r~~i~~v~Q~~~l~~~-ti~eni~~~----~~~~--~~~~~~~~~~~~~~~~~i~-~l~~g~~t~~~~~g~~LSgGqkqr 507 (1133)
|++||||+|+..|++. |++|||.++ .... ..+...+.++..++.+... +.| .+||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p-----------~eLSGGqqQR 150 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKP-----------SELSGGQQQR 150 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCc-----------hhcCHHHHHH
Confidence 4679999999999876 999999953 2111 2334555556656655444 334 5899999999
Q ss_pred HHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhcCCEEEEEeCCeEE
Q 041277 508 IAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRNADVIAVVQDGQVM 576 (1133)
Q Consensus 508 i~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~G~i~ 576 (1133)
|||||||+.+|+|++.||||++||.++.+.|.+.+.+.. .|+|+|+|||+......|||++.|+||++.
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 999999999999999999999999999999999999874 489999999999999999999999999954
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-46 Score=414.60 Aligned_cols=218 Identities=33% Similarity=0.546 Sum_probs=195.8
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhh
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 438 (1133)
..++++||+++|++ ..+++|+||+|++||+++++|||||||||+|++|+||..|++|+|.++|+++.+++++ ++.
T Consensus 4 ~~l~i~~v~k~yg~---~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~ 78 (352)
T COG3842 4 PALEIRNVSKSFGD---FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRP 78 (352)
T ss_pred ceEEEEeeeeecCC---eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hcc
Confidence 35899999999983 3599999999999999999999999999999999999999999999999999998876 468
Q ss_pred ceEEecCCCCcc-ccHHHHHhcCCC-C--CC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHH
Q 041277 439 MGLVSQEPALFA-TSIKENILFGKE-D--AS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAI 510 (1133)
Q Consensus 439 i~~v~Q~~~l~~-~ti~eni~~~~~-~--~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~i 510 (1133)
||+|||+..||+ .||+|||.||.. . .. .+++.++++.+++.++-.+.| .+|||||||||||
T Consensus 79 ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----------~qLSGGQqQRVAL 147 (352)
T COG3842 79 IGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP-----------HQLSGGQQQRVAL 147 (352)
T ss_pred cceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh-----------hhhChHHHHHHHH
Confidence 999999999996 599999999965 1 12 247888999999999888877 4899999999999
Q ss_pred HHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhh-cCCEEEEEeCCeEEeecCcchhccc
Q 041277 511 ARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIR-NADVIAVVQDGQVMETGSHDELIQA 587 (1133)
Q Consensus 511 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 587 (1133)
||||+.+|++||||||+||||.+-+..++..++++. .|.|.|+|||+-+... .+|||.||++|+|...|+|+|+...
T Consensus 148 ARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~ 227 (352)
T COG3842 148 ARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYER 227 (352)
T ss_pred HHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhC
Confidence 999999999999999999999999999999988764 3899999999998765 5999999999999999999999875
Q ss_pred cchhh
Q 041277 588 ESGLY 592 (1133)
Q Consensus 588 ~~~~~ 592 (1133)
+...|
T Consensus 228 P~~~f 232 (352)
T COG3842 228 PATRF 232 (352)
T ss_pred cchHH
Confidence 54444
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-45 Score=401.17 Aligned_cols=240 Identities=33% Similarity=0.540 Sum_probs=218.4
Q ss_pred ccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHh
Q 041277 357 VLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLR 436 (1133)
Q Consensus 357 ~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r 436 (1133)
..+.|+++|++++|++. +..+|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+...++
T Consensus 16 ~~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 94 (257)
T cd03288 16 LGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLR 94 (257)
T ss_pred CCceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHh
Confidence 45789999999999753 24589999999999999999999999999999999999999999999999999888888889
Q ss_pred hhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhh
Q 041277 437 SQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIK 516 (1133)
Q Consensus 437 ~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~ 516 (1133)
+.++|++|+|.+|++|++||+..... ...+++.++.+..++.++++.+|.|+++.+++.+.+||||||||++||||+++
T Consensus 95 ~~i~~v~q~~~l~~~tv~~nl~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 173 (257)
T cd03288 95 SRLSIILQDPILFSGSIRFNLDPECK-CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVR 173 (257)
T ss_pred hhEEEECCCCcccccHHHHhcCcCCC-CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999976432 24556777888889999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhccccchhhHHHH
Q 041277 517 APRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLV 596 (1133)
Q Consensus 517 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 596 (1133)
+|+++||||||++||+++++.+.+.+++..+++|+|++||+++.+..||+|++|++|++++.|+++++.+..++.|++++
T Consensus 174 ~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 253 (257)
T cd03288 174 KSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLV 253 (257)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHHH
Confidence 99999999999999999999999999887778999999999999988999999999999999999999875566777776
Q ss_pred Hh
Q 041277 597 RL 598 (1133)
Q Consensus 597 ~~ 598 (1133)
..
T Consensus 254 ~~ 255 (257)
T cd03288 254 RT 255 (257)
T ss_pred hc
Confidence 53
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-45 Score=374.74 Aligned_cols=226 Identities=32% Similarity=0.469 Sum_probs=190.5
Q ss_pred cEEEEEEEEEcCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCC-HHHHhh
Q 041277 360 EVEFKCVQFAYPSRP-ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQ-LKWLRS 437 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~-~~~~r~ 437 (1133)
.++++|+++.|+... ..++|+||||+|.+||++||||+||||||||.++|+|+.+|++|+|.++|.++.... .+..++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 478999999997542 124899999999999999999999999999999999999999999999998776543 346778
Q ss_pred hceEEecCCCC--cc-ccHHHHHhcCCC----CCCHHHHHHHHHHhchHH-HHHhCCCcccccccCCCCCCChHHHHHHH
Q 041277 438 QMGLVSQEPAL--FA-TSIKENILFGKE----DASMEEVIEAAKASNAHN-FIRQLPQQYDTQVGERGVQMSGGQKQRIA 509 (1133)
Q Consensus 438 ~i~~v~Q~~~l--~~-~ti~eni~~~~~----~~~~~~~~~~~~~~~~~~-~i~~l~~g~~t~~~~~g~~LSgGqkqri~ 509 (1133)
.|.+|||||.- -+ .||++-|.=+.. +...+++.++++.+++.+ ++.+.| .+||||||||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P-----------~eLSGGQ~QRia 151 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRP-----------HELSGGQRQRIA 151 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCc-----------hhcChhHHHHHH
Confidence 89999999963 22 377776653221 234556888888888754 566666 489999999999
Q ss_pred HHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 510 IARAIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 510 iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
|||||..+|++||||||||+||+..+..|.+.+.++.+ +-|.|+|||+++.+.+ ||||+||++|+++|.++.+++..
T Consensus 152 IARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 152 IARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred HHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 99999999999999999999999999999999998765 5699999999999988 99999999999999999999987
Q ss_pred ccchhhHHHH
Q 041277 587 AESGLYTSLV 596 (1133)
Q Consensus 587 ~~~~~~~~~~ 596 (1133)
.....|.+..
T Consensus 232 ~~~h~ytr~L 241 (252)
T COG1124 232 HPSHPYTREL 241 (252)
T ss_pred CCccHHHHHH
Confidence 5456666544
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=436.54 Aligned_cols=204 Identities=27% Similarity=0.402 Sum_probs=154.5
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
|+++|++++|+++ .+|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.. .++
T Consensus 2 i~i~nls~~~g~~---~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~-----------~i~ 67 (638)
T PRK10636 2 IVFSSLQIRRGVR---VLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW-----------QLA 67 (638)
T ss_pred EEEEEEEEEeCCc---eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC-----------EEE
Confidence 6899999999753 49999999999999999999999999999999999999999999998842 478
Q ss_pred EEecCCCCccccHHHHHhcCCCCC---C-----------HHHHHHHHH----------HhchHHHHHhCCCccc-ccccC
Q 041277 441 LVSQEPALFATSIKENILFGKEDA---S-----------MEEVIEAAK----------ASNAHNFIRQLPQQYD-TQVGE 495 (1133)
Q Consensus 441 ~v~Q~~~l~~~ti~eni~~~~~~~---~-----------~~~~~~~~~----------~~~~~~~i~~l~~g~~-t~~~~ 495 (1133)
|++|++..+..|+.+++.-+.... + ...+..... ...+.+.+..+ |+. .....
T Consensus 68 ~~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--gl~~~~~~~ 145 (638)
T PRK10636 68 WVNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGL--GFSNEQLER 145 (638)
T ss_pred EEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC--CCCchhhcC
Confidence 888875444456555543211000 0 000000000 01122233333 232 12344
Q ss_pred CCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCe
Q 041277 496 RGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQ 574 (1133)
Q Consensus 496 ~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~ 574 (1133)
...+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++. +.|+|+|||+...+.. ||+|++|++|+
T Consensus 146 ~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsHd~~~l~~~~d~i~~L~~G~ 223 (638)
T PRK10636 146 PVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISHDRDFLDPIVDKIIHIEQQS 223 (638)
T ss_pred chhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHhcCEEEEEeCCE
Confidence 55689999999999999999999999999999999999999999998775 5799999999999876 99999999999
Q ss_pred EEe-ecCcc
Q 041277 575 VME-TGSHD 582 (1133)
Q Consensus 575 i~~-~g~~~ 582 (1133)
+.. .|+++
T Consensus 224 i~~~~g~~~ 232 (638)
T PRK10636 224 LFEYTGNYS 232 (638)
T ss_pred EEEecCCHH
Confidence 864 44443
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-45 Score=383.14 Aligned_cols=209 Identities=27% Similarity=0.514 Sum_probs=184.7
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.|+++|++++|+++ ++|+||||++++|++++|+||||||||||+|+|+|+.+|.+|+|.+.|.+.++... +.+|
T Consensus 4 ~i~v~nl~v~y~~~---~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~I 77 (254)
T COG1121 4 MIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRI 77 (254)
T ss_pred EEEEeeeEEEECCE---eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeE
Confidence 58999999999753 39999999999999999999999999999999999999999999999988765432 4579
Q ss_pred eEEecCC---CCccccHHHHHhcCCCCC----------CHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHH
Q 041277 440 GLVSQEP---ALFATSIKENILFGKEDA----------SMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQ 506 (1133)
Q Consensus 440 ~~v~Q~~---~l~~~ti~eni~~~~~~~----------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 506 (1133)
|||||.. |-|+.||+|-+.+|.... +.+++.++++.+++.++.++- + .+|||||+|
T Consensus 78 gYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~-------i----~~LSGGQ~Q 146 (254)
T COG1121 78 GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQ-------I----GELSGGQKQ 146 (254)
T ss_pred EEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCc-------c----cccCcHHHH
Confidence 9999965 568899999999984321 247899999999998876542 2 479999999
Q ss_pred HHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchh
Q 041277 507 RIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584 (1133)
Q Consensus 507 ri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 584 (1133)
|+.|||||+++|++|+|||||+++|+.++..|.+.|+++. +|+||++||||++.+.. +|+|+.| |++++..|++++.
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~L-n~~~~~~G~~~~~ 225 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGPPEEV 225 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEE-cCeeEeccChhhc
Confidence 9999999999999999999999999999999999999886 49999999999999865 9999999 5678899999999
Q ss_pred cc
Q 041277 585 IQ 586 (1133)
Q Consensus 585 ~~ 586 (1133)
.+
T Consensus 226 ~~ 227 (254)
T COG1121 226 LT 227 (254)
T ss_pred cC
Confidence 86
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-44 Score=393.84 Aligned_cols=234 Identities=55% Similarity=0.854 Sum_probs=212.8
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
++++|++++|++. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|+.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDPG--RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCCC--CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4789999999632 34899999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCE
Q 041277 441 LVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRI 520 (1133)
Q Consensus 441 ~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~i 520 (1133)
|++|++.+|+.|++||+.++.+..+.+++.++++..++.+.+..+|.|+++.+..++.+||||||||++|||||+++|++
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l 158 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI 158 (236)
T ss_pred EECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987655566677777888899999999999999999999999999999999999999999999
Q ss_pred EEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhccccchhhHHHHH
Q 041277 521 LLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVR 597 (1133)
Q Consensus 521 lllDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 597 (1133)
+||||||++||+++.+.+.+.|.+..+++|+|++||+++.+..||++++|++|++++.|+.+++.. ....|+..+.
T Consensus 159 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~-~~~~~~~~~~ 234 (236)
T cd03253 159 LLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLA-KGGLYAEMWK 234 (236)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh-cccHHHHHHh
Confidence 999999999999999999999988766899999999999998899999999999999999988876 4555555443
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-45 Score=411.25 Aligned_cols=225 Identities=28% Similarity=0.484 Sum_probs=191.1
Q ss_pred EEEEEEEEEcCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHH---Hh
Q 041277 361 VEFKCVQFAYPSRP-ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKW---LR 436 (1133)
Q Consensus 361 i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~---~r 436 (1133)
|+++|++++|+... ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+++..+ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996321 246999999999999999999999999999999999999999999999999998877554 47
Q ss_pred hhceEEecCCCCcc-ccHHHHHhcCCC--CCC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHH
Q 041277 437 SQMGLVSQEPALFA-TSIKENILFGKE--DAS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIA 509 (1133)
Q Consensus 437 ~~i~~v~Q~~~l~~-~ti~eni~~~~~--~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~ 509 (1133)
++|||+||++.+|+ .|++||+.++.. ..+ .+++.++++..++.+..++. +.+||||||||++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~-----------~~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSY-----------PSNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCC-----------hhhCCHHHHHHHH
Confidence 78999999999996 699999998532 122 23455666666666555444 3589999999999
Q ss_pred HHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 510 IARAIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 510 iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
|||||+.+|++||||||||+||+.+++.+.+.|+++.+ |.|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 99999999999999999999999999999999998753 8999999999999976 99999999999999999999976
Q ss_pred ccch-hhHHHH
Q 041277 587 AESG-LYTSLV 596 (1133)
Q Consensus 587 ~~~~-~~~~~~ 596 (1133)
.+.. .++.+.
T Consensus 231 ~p~~~~~~~~~ 241 (343)
T TIGR02314 231 HPKTPLAQKFI 241 (343)
T ss_pred CCCcHHHHHHH
Confidence 4333 334444
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-44 Score=393.42 Aligned_cols=225 Identities=57% Similarity=0.898 Sum_probs=207.7
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
|+++|++++|++. +.++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+++.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4789999999753 235899999999999999999999999999999999999999999999999998777777888999
Q ss_pred EEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCE
Q 041277 441 LVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRI 520 (1133)
Q Consensus 441 ~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~i 520 (1133)
|++|++.+|+.|++||+.++.+....+++.+.++..++.++++.+|.|+++..+..+.+||||||||++|||||+++|++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987655556667777888889999999999999999999999999999999999999999999
Q ss_pred EEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhcc
Q 041277 521 LLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 521 lllDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
+||||||++||+.+++.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|+++++..
T Consensus 160 llLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 225 (234)
T cd03251 160 LILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLA 225 (234)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHH
Confidence 999999999999999999999998877899999999999988899999999999999999988875
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-44 Score=391.49 Aligned_cols=226 Identities=52% Similarity=0.870 Sum_probs=208.8
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhh
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 438 (1133)
+.|+++|++++|++. +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|+.
T Consensus 1 ~~l~~~~l~~~~~~~--~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (229)
T cd03254 1 GEIEFENVNFSYDEK--KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSM 78 (229)
T ss_pred CeEEEEEEEEecCCC--CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhh
Confidence 358999999999742 248999999999999999999999999999999999999999999999999988877788889
Q ss_pred ceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCC
Q 041277 439 MGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAP 518 (1133)
Q Consensus 439 i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~ 518 (1133)
++|++|++.+|+.|++||+.++.+....+++.++++..++.++++.+|.|+++.++....+||||||||++|||||+.+|
T Consensus 79 i~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p 158 (229)
T cd03254 79 IGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDP 158 (229)
T ss_pred EEEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999876655567777888888999999999999999999999999999999999999999999
Q ss_pred CEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhcc
Q 041277 519 RILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 519 ~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|+.+++..
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 226 (229)
T cd03254 159 KILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA 226 (229)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 99999999999999999999999998877899999999999988899999999999999998877754
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-45 Score=386.88 Aligned_cols=214 Identities=38% Similarity=0.647 Sum_probs=194.6
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecC-CCCHHHHhhh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSID-KLQLKWLRSQ 438 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~-~~~~~~~r~~ 438 (1133)
.++++|++|+|+++ .++|+|+||+|++||.++|+||||||||||++++.|+++|++|+|.++|.++. ..+...+|++
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 47899999999865 46999999999999999999999999999999999999999999999999988 4778899999
Q ss_pred ceEEecCC--CCccccHHHHHhcCCCCC--C----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHH
Q 041277 439 MGLVSQEP--ALFATSIKENILFGKEDA--S----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAI 510 (1133)
Q Consensus 439 i~~v~Q~~--~l~~~ti~eni~~~~~~~--~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~i 510 (1133)
+|||+|+| .+|..||.|.++||..+. + ++++.++++.+++.++.++.| .+||||||||+||
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----------~~LSGGqkqRvaI 149 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPP-----------FNLSGGQKQRVAI 149 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCc-----------cccCCcceeeHHh
Confidence 99999999 789999999999986532 2 245677888888888766655 5899999999999
Q ss_pred HHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 511 ARAIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 511 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
|.+|+.+|++||||||||+||+...+.+.+.++++.+ |+|+|++||+++.+.. ||++++|++|+++.+|+++++.+
T Consensus 150 A~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~ 228 (235)
T COG1122 150 AGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFN 228 (235)
T ss_pred hHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhh
Confidence 9999999999999999999999999999999999863 5899999999999877 99999999999999999988876
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-44 Score=393.18 Aligned_cols=226 Identities=69% Similarity=1.058 Sum_probs=206.7
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
++++|++++|++..+.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++++++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 46899999997532346899999999999999999999999999999999999999999999999988777777778899
Q ss_pred EEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCE
Q 041277 441 LVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRI 520 (1133)
Q Consensus 441 ~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~i 520 (1133)
|++|++.+|+.|++||+.++.+....+++.+.++..++.+++..+|.|+++..+....+||||||||++||||++.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999989999999987655555666777777888899999999999999999999999999999999999999999
Q ss_pred EEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhcc
Q 041277 521 LLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 521 lllDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
+||||||++||+.+++.+.+.|++..+++|+|++||+++.+..||++++|++|++++.|+.+++..
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMA 226 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhh
Confidence 999999999999999999999988767899999999999988899999999999999999888865
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-44 Score=386.19 Aligned_cols=220 Identities=37% Similarity=0.601 Sum_probs=204.4
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhh
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 438 (1133)
+.++++|++++|+.. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+++.
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (221)
T cd03244 1 GDIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSR 79 (221)
T ss_pred CcEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhh
Confidence 358999999999743 2459999999999999999999999999999999999999999999999999988888888899
Q ss_pred ceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCC
Q 041277 439 MGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAP 518 (1133)
Q Consensus 439 i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~ 518 (1133)
++|++|++.+++.|++||+.+... ...+++.++++..++.+++.++|.|+++..++.+.+||||||||++||||++.+|
T Consensus 80 i~~~~q~~~l~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p 158 (221)
T cd03244 80 ISIIPQDPVLFSGTIRSNLDPFGE-YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKS 158 (221)
T ss_pred EEEECCCCccccchHHHHhCcCCC-CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999986543 4567788889999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeecC
Q 041277 519 RILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGS 580 (1133)
Q Consensus 519 ~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~ 580 (1133)
+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|+
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 159 KILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 99999999999999999999999998877899999999999998899999999999998875
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-43 Score=433.44 Aligned_cols=204 Identities=27% Similarity=0.387 Sum_probs=154.2
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
|+++|++++|+++ .+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. .++
T Consensus 4 l~i~~ls~~~~~~---~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~-----------~~~ 69 (635)
T PRK11147 4 ISIHGAWLSFSDA---PLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDL-----------IVA 69 (635)
T ss_pred EEEeeEEEEeCCc---eeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCC-----------EEE
Confidence 7899999999743 49999999999999999999999999999999999999999999998731 367
Q ss_pred EEecCCCC-ccccHHHHHhcCCCC------------------CCHHHHHHHHH-------------HhchHHHHHhCCCc
Q 041277 441 LVSQEPAL-FATSIKENILFGKED------------------ASMEEVIEAAK-------------ASNAHNFIRQLPQQ 488 (1133)
Q Consensus 441 ~v~Q~~~l-~~~ti~eni~~~~~~------------------~~~~~~~~~~~-------------~~~~~~~i~~l~~g 488 (1133)
+++|++.. ..+++.+++..+... ...+.+..... ...+.+.++.+ |
T Consensus 70 ~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--g 147 (635)
T PRK11147 70 RLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQL--G 147 (635)
T ss_pred EeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhC--C
Confidence 78876532 224666654322100 00000000000 01122333333 2
Q ss_pred ccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEE
Q 041277 489 YDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVI 567 (1133)
Q Consensus 489 ~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i 567 (1133)
+. ......+||||||||++|||||+.+|++|||||||++||+++...+.+.|+++ +.|+|+|||+...+.. ||+|
T Consensus 148 l~--~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~--~~tvlivsHd~~~l~~~~d~i 223 (635)
T PRK11147 148 LD--PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF--QGSIIFISHDRSFIRNMATRI 223 (635)
T ss_pred CC--CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhcCeE
Confidence 21 13455689999999999999999999999999999999999999999999877 3599999999999876 9999
Q ss_pred EEEeCCeEEe-ecCcchh
Q 041277 568 AVVQDGQVME-TGSHDEL 584 (1133)
Q Consensus 568 ~~l~~G~i~~-~g~~~~l 584 (1133)
++|++|+++. .|++++.
T Consensus 224 ~~L~~G~i~~~~g~~~~~ 241 (635)
T PRK11147 224 VDLDRGKLVSYPGNYDQY 241 (635)
T ss_pred EEEECCEEEEecCCHHHH
Confidence 9999999974 3555444
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-45 Score=379.98 Aligned_cols=214 Identities=31% Similarity=0.509 Sum_probs=186.8
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCe---ecCCCCHHHHh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGV---SIDKLQLKWLR 436 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~---~~~~~~~~~~r 436 (1133)
.|+++|+++.|+.. .+++|||++|+.||.+|+.|||||||||||++|+|+..|++|.|.+||. |.++.. .-.
T Consensus 2 ~i~i~~~~~~~~~~---~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~--~~~ 76 (345)
T COG1118 2 SIRINNVKKRFGAF---GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLA--VRD 76 (345)
T ss_pred ceeehhhhhhcccc---cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccc--hhh
Confidence 47889999999754 4899999999999999999999999999999999999999999999999 555533 234
Q ss_pred hhceEEecCCCCcc-ccHHHHHhcCCC--------CCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHH
Q 041277 437 SQMGLVSQEPALFA-TSIKENILFGKE--------DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQR 507 (1133)
Q Consensus 437 ~~i~~v~Q~~~l~~-~ti~eni~~~~~--------~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqr 507 (1133)
++||+|+|+..||. .||.+||+||.+ .....++.+.++.+++.++-++.| .+||||||||
T Consensus 77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----------~QLSGGQrQR 145 (345)
T COG1118 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP-----------AQLSGGQRQR 145 (345)
T ss_pred cceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc-----------hhcChHHHHH
Confidence 67999999999985 699999999962 123456667777888777777766 5899999999
Q ss_pred HHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchh
Q 041277 508 IAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584 (1133)
Q Consensus 508 i~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 584 (1133)
|||||||..+|++||||||++|||++.++.+..-|++.. -|.|+++||||.+.+.. ||||++|++|+|...|+++|+
T Consensus 146 VALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev 225 (345)
T COG1118 146 VALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEV 225 (345)
T ss_pred HHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHH
Confidence 999999999999999999999999999999999998864 38999999999998755 999999999999999999999
Q ss_pred ccccc
Q 041277 585 IQAES 589 (1133)
Q Consensus 585 ~~~~~ 589 (1133)
...++
T Consensus 226 ~~~P~ 230 (345)
T COG1118 226 YDHPA 230 (345)
T ss_pred hcCCC
Confidence 76544
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=382.53 Aligned_cols=219 Identities=41% Similarity=0.682 Sum_probs=200.3
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.++++|++++|++. ..++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 2 RIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred eEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 58999999999742 24589999999999999999999999999999999999999999999999998877777778899
Q ss_pred eEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCC
Q 041277 440 GLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPR 519 (1133)
Q Consensus 440 ~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~ 519 (1133)
+|++|++.+|..|++||+.++.+....+++.+.++..++.+.++.+|.|++|.+.+...+||||||||++||||++.+|+
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 99999999998899999988754445567778888889999999999999999999999999999999999999999999
Q ss_pred EEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeec
Q 041277 520 ILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETG 579 (1133)
Q Consensus 520 illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g 579 (1133)
++||||||++||+.+...+.+.|++..+++|+|++||+++.++.||++++|++|++++.|
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 999999999999999999999999886668999999999988779999999999998754
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-43 Score=386.62 Aligned_cols=212 Identities=33% Similarity=0.528 Sum_probs=181.2
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCH---HHHhh
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQL---KWLRS 437 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~---~~~r~ 437 (1133)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 478999999974 349999999999999999999999999999999999999999999999999887654 56788
Q ss_pred hceEEecCCCCccc-cHHHHHhcCCC---CCCHH----HHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHH
Q 041277 438 QMGLVSQEPALFAT-SIKENILFGKE---DASME----EVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIA 509 (1133)
Q Consensus 438 ~i~~v~Q~~~l~~~-ti~eni~~~~~---~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~ 509 (1133)
.|+||+|++.+|+. |++||+.++.. ..+.+ ++.++++..++.++. .....+||||||||++
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~ 146 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAE-----------DLYPAELSGGMKKRVA 146 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHH
Confidence 89999999999986 99999987532 12222 233444444443332 3344589999999999
Q ss_pred HHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 510 IARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 510 iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
|||||+.+|+++||||||++||+.+++.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 147 ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 9999999999999999999999999999999999875 37999999999998876 99999999999999999998875
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-43 Score=402.28 Aligned_cols=218 Identities=27% Similarity=0.466 Sum_probs=189.8
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.|+++|++++|++ +..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+.. +++|
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 78 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDI 78 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 3889999999942 23589999999999999999999999999999999999999999999999999877654 4689
Q ss_pred eEEecCCCCcc-ccHHHHHhcCCCC--CC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHH
Q 041277 440 GLVSQEPALFA-TSIKENILFGKED--AS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIAR 512 (1133)
Q Consensus 440 ~~v~Q~~~l~~-~ti~eni~~~~~~--~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iAR 512 (1133)
|||+|++.+|+ .||+|||.|+... .+ .+++.++++..++.++.++.| .+||||||||++|||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvalAR 147 (356)
T PRK11650 79 AMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP-----------RELSGGQRQRVAMGR 147 (356)
T ss_pred EEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh-----------hhCCHHHHHHHHHHH
Confidence 99999999996 5999999987431 12 244667777778877766665 489999999999999
Q ss_pred HHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhccccc
Q 041277 513 AIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQAES 589 (1133)
Q Consensus 513 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 589 (1133)
||+++|++||||||||+||+.+++.+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|+++++.+.+.
T Consensus 148 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p~ 227 (356)
T PRK11650 148 AIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPA 227 (356)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCCc
Confidence 99999999999999999999999999999988753 7999999999998765 99999999999999999999976444
Q ss_pred hhh
Q 041277 590 GLY 592 (1133)
Q Consensus 590 ~~~ 592 (1133)
..|
T Consensus 228 ~~~ 230 (356)
T PRK11650 228 STF 230 (356)
T ss_pred cHH
Confidence 333
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-43 Score=394.16 Aligned_cols=221 Identities=27% Similarity=0.447 Sum_probs=186.4
Q ss_pred ccEEEEEEEEEcCCCC--CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCC------
Q 041277 359 GEVEFKCVQFAYPSRP--ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKL------ 430 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~------ 430 (1133)
..|+++|++|+|+... ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 3589999999997421 23599999999999999999999999999999999999999999999999998653
Q ss_pred ----------CHHHHhhhceEEecCC--CCccccHHHHHhcCCC--CCCHHHHHHHHHHhchHHHHHhCCCccc-ccccC
Q 041277 431 ----------QLKWLRSQMGLVSQEP--ALFATSIKENILFGKE--DASMEEVIEAAKASNAHNFIRQLPQQYD-TQVGE 495 (1133)
Q Consensus 431 ----------~~~~~r~~i~~v~Q~~--~l~~~ti~eni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~ 495 (1133)
....+|++|+||+|+| .+|+.|++|||.++.. ..+.++..+ . ..++++.+ |++ ...++
T Consensus 100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~---~--~~~~l~~~--gL~~~~~~~ 172 (320)
T PRK13631 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKK---L--AKFYLNKM--GLDDSYLER 172 (320)
T ss_pred cccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHH---H--HHHHHHHc--CCChhHhcC
Confidence 3456788999999998 6899999999998742 223332221 1 12344444 343 34567
Q ss_pred CCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhh-cCCEEEEEeCC
Q 041277 496 RGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIR-NADVIAVVQDG 573 (1133)
Q Consensus 496 ~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G 573 (1133)
.+.+||||||||++|||||+++|++|||||||++||+.+++.+.+.|.++. +|+|+|+|||+++.+. .||+|++|++|
T Consensus 173 ~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G 252 (320)
T PRK13631 173 SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKG 252 (320)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 788999999999999999999999999999999999999999999998764 5899999999999875 59999999999
Q ss_pred eEEeecCcchhcc
Q 041277 574 QVMETGSHDELIQ 586 (1133)
Q Consensus 574 ~i~~~g~~~~l~~ 586 (1133)
++++.|+++++..
T Consensus 253 ~i~~~g~~~~~~~ 265 (320)
T PRK13631 253 KILKTGTPYEIFT 265 (320)
T ss_pred EEEEeCCHHHHhc
Confidence 9999999999876
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=401.24 Aligned_cols=215 Identities=32% Similarity=0.504 Sum_probs=188.0
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+.. +++|
T Consensus 6 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 80 (351)
T PRK11432 6 FVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDI 80 (351)
T ss_pred EEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 5899999999974 3489999999999999999999999999999999999999999999999999876643 5789
Q ss_pred eEEecCCCCccc-cHHHHHhcCCC--CCC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHH
Q 041277 440 GLVSQEPALFAT-SIKENILFGKE--DAS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIAR 512 (1133)
Q Consensus 440 ~~v~Q~~~l~~~-ti~eni~~~~~--~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iAR 512 (1133)
|||+|++.+|+. |++|||.|+.. ..+ .+++.++++..++.++.++.| .+||||||||++|||
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~-----------~~LSgGq~QRVaLAR 149 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYV-----------DQISGGQQQRVALAR 149 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999965 99999998743 112 345666777777766555444 589999999999999
Q ss_pred HHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhccccc
Q 041277 513 AIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQAES 589 (1133)
Q Consensus 513 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 589 (1133)
||+.+|++||||||||+||+.+++.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++...+.
T Consensus 150 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~ 229 (351)
T PRK11432 150 ALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPA 229 (351)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 99999999999999999999999999999998753 8999999999998865 99999999999999999999976444
Q ss_pred h
Q 041277 590 G 590 (1133)
Q Consensus 590 ~ 590 (1133)
.
T Consensus 230 ~ 230 (351)
T PRK11432 230 S 230 (351)
T ss_pred c
Confidence 3
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-43 Score=379.81 Aligned_cols=219 Identities=53% Similarity=0.862 Sum_probs=197.2
Q ss_pred ccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHh
Q 041277 357 VLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLR 436 (1133)
Q Consensus 357 ~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r 436 (1133)
..+.++++|++++|+++...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+....+
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 45679999999999753223589999999999999999999999999999999999999999999999998877777778
Q ss_pred hhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhh
Q 041277 437 SQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIK 516 (1133)
Q Consensus 437 ~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~ 516 (1133)
+.++|++|++.+|+.|++||+.++.......++.+..+..++.++++.+|.|+++.+.+.+.+||||||||++||||+++
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~ 167 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIR 167 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 89999999999999999999998755444455555556667888999999899999999999999999999999999999
Q ss_pred CCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeE
Q 041277 517 APRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQV 575 (1133)
Q Consensus 517 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i 575 (1133)
+|+++||||||++||+++.+.+.+.++++.+++|+|++||+++.+..||+|++|++|++
T Consensus 168 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 168 NPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999988777999999999999988999999999974
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-43 Score=381.50 Aligned_cols=212 Identities=35% Similarity=0.564 Sum_probs=181.5
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhcc-----CCCccEEEECCeecCCCC--HH
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFY-----APLGGEIILDGVSIDKLQ--LK 433 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~-----~~~~G~i~~~g~~~~~~~--~~ 433 (1133)
|+++|++++|+++ ++|+|+||++++||+++|+||||||||||+++|+|++ +|++|+|.++|+++.+.+ ..
T Consensus 1 i~~~~l~~~~~~~---~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGDK---HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCCc---eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 4789999999743 4899999999999999999999999999999999999 999999999999988766 55
Q ss_pred HHhhhceEEecCCCCccccHHHHHhcCCCCC---C----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHH
Q 041277 434 WLRSQMGLVSQEPALFATSIKENILFGKEDA---S----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQ 506 (1133)
Q Consensus 434 ~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~---~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 506 (1133)
.++++++|++|++.+|..|++||+.++.... . .+++.++++..++.+.+...++ +.+|||||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~q 148 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQ 148 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHH
Confidence 6788999999999999779999998753211 1 2344555666665544333221 3689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchh
Q 041277 507 RIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584 (1133)
Q Consensus 507 ri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 584 (1133)
|++||||++++|+++||||||++||+.+++.+.+.|++..+.+|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 149 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 149 RLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 999999999999999999999999999999999999987655899999999998865 999999999999999988764
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-42 Score=423.80 Aligned_cols=218 Identities=22% Similarity=0.275 Sum_probs=158.9
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhcc---CCCccEEEECCeecCC--CCH-
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFY---APLGGEIILDGVSIDK--LQL- 432 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~---~~~~G~i~~~g~~~~~--~~~- 432 (1133)
..|+++|++|+|+++ .+|+|+||+|++|+++|||||||||||||+++|+|.. .|.+|+|.+.++++.. .+.
T Consensus 176 ~~I~i~nls~~y~~~---~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~ 252 (718)
T PLN03073 176 KDIHMENFSISVGGR---DLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTAL 252 (718)
T ss_pred eeEEEceEEEEeCCC---EEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHH
Confidence 359999999999743 4999999999999999999999999999999999864 5889999865554321 111
Q ss_pred -----------HHHhhhceEEecCCCCccccHHHHHhcCCC-CCCH----HHHHHHHHHhch----------HHHHHhCC
Q 041277 433 -----------KWLRSQMGLVSQEPALFATSIKENILFGKE-DASM----EEVIEAAKASNA----------HNFIRQLP 486 (1133)
Q Consensus 433 -----------~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~-~~~~----~~~~~~~~~~~~----------~~~i~~l~ 486 (1133)
..+++.+++++|+|.+...+..+|...... .... +++.++.+..++ ...+..+
T Consensus 253 ~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~l- 331 (718)
T PLN03073 253 QCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGL- 331 (718)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHC-
Confidence 123456899999887654444444422110 0111 122222222211 1222222
Q ss_pred Cccc-ccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-C
Q 041277 487 QQYD-TQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-A 564 (1133)
Q Consensus 487 ~g~~-t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~ 564 (1133)
|++ ........+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++ +.|+|+|||++..+.. |
T Consensus 332 -gl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~~tviivsHd~~~l~~~~ 408 (718)
T PLN03073 332 -SFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSHAREFLNTVV 408 (718)
T ss_pred -CCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhC
Confidence 221 1122334689999999999999999999999999999999999999999999876 6899999999999877 9
Q ss_pred CEEEEEeCCeEE-eecCcch
Q 041277 565 DVIAVVQDGQVM-ETGSHDE 583 (1133)
Q Consensus 565 d~i~~l~~G~i~-~~g~~~~ 583 (1133)
|+|++|++|++. ..|++++
T Consensus 409 d~i~~l~~g~i~~~~g~~~~ 428 (718)
T PLN03073 409 TDILHLHGQKLVTYKGDYDT 428 (718)
T ss_pred CEEEEEECCEEEEeCCCHHH
Confidence 999999999996 4555444
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=378.14 Aligned_cols=464 Identities=14% Similarity=0.147 Sum_probs=347.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHH------HHHHHhhHHHHHHHH
Q 041277 83 TVHLLYLALGSWVACFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEV------ITSVSNDSLVIQDAI 156 (1133)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l------~~r~~~D~~~i~~~~ 156 (1133)
...+..++.+..++...+.++......++..-|-+.+.++-+.....|+.. ..|.+ =.|+.+|+..+-+..
T Consensus 89 l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~---~~~~~~~~dNpDQRi~eDi~~~t~~t 165 (604)
T COG4178 89 LQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLA---QAGGIGLIDNPDQRIQEDIRNFTETT 165 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHH---hcccccCCCChHHhHHHHHHHHHhhH
Confidence 334444555555666667777666666666666677777777766444432 33322 269999999888877
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHh---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 157 SEKLPNFVMNASLFFGCYLVAFLML---------------WRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAG 221 (1133)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (1133)
......++.+++.++...+++..++ ..+..++++.+++.-++..+++|.+.+..-+.++..+...
T Consensus 166 ~~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR 245 (604)
T COG4178 166 LDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFR 245 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHH
Confidence 6666677777776666555554222 2233344445555556666788888888888888888888
Q ss_pred HHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccH
Q 041277 222 TIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGLK----QGLAKGLAIGSNGVTFGIWSFLCYYGSRMVMYHGAQG 297 (1133)
Q Consensus 222 ~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~t~ 297 (1133)
..+.-.-.+...|-.|+.|+.+.++.++......+...+ ...+..+..+ ...++.++-+..++-....|.++.
T Consensus 246 ~~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~g---y~~~s~v~P~li~ap~~f~g~i~~ 322 (604)
T COG4178 246 YSLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLG---YGWLSVVLPILIAAPRYFSGQITF 322 (604)
T ss_pred HHHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhh---hhHHHHHHHHHhccHhhhcCcChH
Confidence 888889999999999999999998877666655443333 2222222222 222222233334555678899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--CCCCCCCcc--ccc---ccccccEEEEEEEEEc
Q 041277 298 GTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEMIKRVP--KIDSDSMEG--EIL---ENVLGEVEFKCVQFAY 370 (1133)
Q Consensus 298 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~--~~~~~~~~~--~~~---~~~~~~i~~~~v~~~y 370 (1133)
|.++.....+......++.+...+..+++=++...|+.++.+.-. +.+...... ... ...+..|+++|++..-
T Consensus 323 G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~ 402 (604)
T COG4178 323 GGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRT 402 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEEC
Confidence 999988888888888888999999999999999999999864321 111011000 000 1114679999999998
Q ss_pred CCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCcc
Q 041277 371 PSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFA 450 (1133)
Q Consensus 371 ~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~ 450 (1133)
|+.. ..+++.||++++||.+-|.||||||||||+++|+|+++--+|+|..-.. ..+-|+||.|++-.
T Consensus 403 p~~~--~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~-----------~~~lflpQ~PY~p~ 469 (604)
T COG4178 403 PDGQ--TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPAD-----------SALLFLPQRPYLPQ 469 (604)
T ss_pred CCCC--eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCC-----------CceEEecCCCCCCC
Confidence 8643 6899999999999999999999999999999999999999999876521 25899999999999
Q ss_pred ccHHHHHhcCCCC--CCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCccc
Q 041277 451 TSIKENILFGKED--ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATS 528 (1133)
Q Consensus 451 ~ti~eni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts 528 (1133)
||.||-|+|+... .+++++.+++.++++.++++++.+-.+ -...||+|||||+++||.++++|++++|||+||
T Consensus 470 GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~-----W~~vLS~GEqQRlafARilL~kP~~v~LDEATs 544 (604)
T COG4178 470 GTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDR-----WDRVLSGGEQQRLAFARLLLHKPKWVFLDEATS 544 (604)
T ss_pred ccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCc-----HhhhcChhHHHHHHHHHHHHcCCCEEEEecchh
Confidence 9999999998764 789999999999999999999754222 345799999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEE
Q 041277 529 ALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVV 570 (1133)
Q Consensus 529 ~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 570 (1133)
|||++++..+.+.+++...+.|+|-|.||.......++.+-+
T Consensus 545 ALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l 586 (604)
T COG4178 545 ALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLEL 586 (604)
T ss_pred ccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheee
Confidence 999999999999999988999999999998777666665444
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=400.75 Aligned_cols=207 Identities=34% Similarity=0.522 Sum_probs=181.2
Q ss_pred CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHH----hhhceEEecCCCCccc
Q 041277 376 SIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWL----RSQMGLVSQEPALFAT 451 (1133)
Q Consensus 376 ~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~----r~~i~~v~Q~~~l~~~ 451 (1133)
+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..++ |++|+||+|++++|+.
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 348999999999999999999999999999999999999999999999999999888777 7789999999999975
Q ss_pred -cHHHHHhcCCCC--C----CHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEe
Q 041277 452 -SIKENILFGKED--A----SMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLD 524 (1133)
Q Consensus 452 -ti~eni~~~~~~--~----~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlD 524 (1133)
||+|||.++.+. . ..+++.++++.+++.+++.+.| .+||||||||++|||||+.+|+|||||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----------~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYP-----------DELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCCh-----------hhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999999986431 1 2345667777777766655544 589999999999999999999999999
Q ss_pred CcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhccccchhhH
Q 041277 525 EATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQAESGLYT 593 (1133)
Q Consensus 525 E~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 593 (1133)
||||+||+.+++.+++.+.++. .++|+|+|||+++.+.. ||+|++|++|++++.|++++++.++...|.
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~~ 226 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYV 226 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcccHHH
Confidence 9999999999999999998874 38999999999998754 999999999999999999999864434443
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-43 Score=400.82 Aligned_cols=217 Identities=29% Similarity=0.460 Sum_probs=186.6
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.|+++|++++|++. .+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.+.. ++.|
T Consensus 4 ~l~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~i 78 (353)
T TIGR03265 4 YLSIDNIRKRFGAF---TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDY 78 (353)
T ss_pred EEEEEEEEEEeCCe---EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 48999999999743 489999999999999999999999999999999999999999999999999876653 5689
Q ss_pred eEEecCCCCcc-ccHHHHHhcCCCC--CC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHH
Q 041277 440 GLVSQEPALFA-TSIKENILFGKED--AS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIAR 512 (1133)
Q Consensus 440 ~~v~Q~~~l~~-~ti~eni~~~~~~--~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iAR 512 (1133)
|||+|++.+|+ .|++||+.|+... .+ .+++.++++..++.++.+ ..+.+||||||||++|||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~-----------~~~~~LSgGq~QRvaLAR 147 (353)
T TIGR03265 79 GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSER-----------KYPGQLSGGQQQRVALAR 147 (353)
T ss_pred EEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhh-----------CChhhCCHHHHHHHHHHH
Confidence 99999999996 5999999987431 11 234555555555554444 344689999999999999
Q ss_pred HHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhccccc
Q 041277 513 AIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQAES 589 (1133)
Q Consensus 513 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 589 (1133)
||+.+|+++|||||||+||+.+++.+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|+++++.+.+.
T Consensus 148 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p~ 227 (353)
T TIGR03265 148 ALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPA 227 (353)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 99999999999999999999999999999988753 8999999999998765 99999999999999999999987443
Q ss_pred hhh
Q 041277 590 GLY 592 (1133)
Q Consensus 590 ~~~ 592 (1133)
..|
T Consensus 228 ~~~ 230 (353)
T TIGR03265 228 TPF 230 (353)
T ss_pred CHH
Confidence 333
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-43 Score=389.06 Aligned_cols=216 Identities=32% Similarity=0.525 Sum_probs=188.8
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.++++||+++|++....++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999743223589999999999999999999999999999999999999999999999999887777888899
Q ss_pred eEEecCCC--CccccHHHHHhcCCCC--CC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHH
Q 041277 440 GLVSQEPA--LFATSIKENILFGKED--AS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIA 511 (1133)
Q Consensus 440 ~~v~Q~~~--l~~~ti~eni~~~~~~--~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iA 511 (1133)
|||+|+|. ++..||+|||.++... .+ .+++.++++..++.++.++.| .+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREP-----------ARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence 99999984 4567999999987421 22 234566777777766655544 58999999999999
Q ss_pred HHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhcc
Q 041277 512 RAIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 512 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
|||+.+|++|||||||++||+.+++.+.+.|+++.+ |+|+|++||+++.+..||+|++|++|++++.|+++++..
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFS 229 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHc
Confidence 999999999999999999999999999999998753 899999999999987799999999999999999988865
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-43 Score=368.80 Aligned_cols=225 Identities=33% Similarity=0.530 Sum_probs=197.8
Q ss_pred cEEEEEEEEEcCCCCC---------------------CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCcc
Q 041277 360 EVEFKCVQFAYPSRPE---------------------SIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGG 418 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~---------------------~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G 418 (1133)
.|+++||++-|+.++. ..-++|+||+|+.||+..|.|-||||||||++++.|+++|+.|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 4788888888865321 1247899999999999999999999999999999999999999
Q ss_pred EEEECCeecCCCCHHHHh----hhceEEecCCCCccc-cHHHHHhcCCCC------CCHHHHHHHHHHhchHHHHHhCCC
Q 041277 419 EIILDGVSIDKLQLKWLR----SQMGLVSQEPALFAT-SIKENILFGKED------ASMEEVIEAAKASNAHNFIRQLPQ 487 (1133)
Q Consensus 419 ~i~~~g~~~~~~~~~~~r----~~i~~v~Q~~~l~~~-ti~eni~~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~ 487 (1133)
+|+++|.|+..++.++|| +++++|||+.-|++- ||.||..||.+- ...+...++++.+++++|-.+.|+
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~ 163 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPN 163 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcc
Confidence 999999999999987664 579999999999865 999999998651 234567788999999999888885
Q ss_pred cccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhh-cC
Q 041277 488 QYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIR-NA 564 (1133)
Q Consensus 488 g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~-~~ 564 (1133)
+||||+||||.|||||..||+|||+|||+|||||--+..+|+-|.++. -+||+++|||+++..- -.
T Consensus 164 -----------eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 164 -----------ELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG 232 (386)
T ss_pred -----------cccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence 899999999999999999999999999999999999999999888764 3899999999999864 59
Q ss_pred CEEEEEeCCeEEeecCcchhccccchhhHHH
Q 041277 565 DVIAVVQDGQVMETGSHDELIQAESGLYTSL 595 (1133)
Q Consensus 565 d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 595 (1133)
|||..|++|+|+..|||+|++.++...|-.-
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~~PAndYV~~ 263 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILLNPANDYVRD 263 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHcCccHHHHHH
Confidence 9999999999999999999997666666543
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-43 Score=398.07 Aligned_cols=218 Identities=33% Similarity=0.547 Sum_probs=190.2
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhh
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 438 (1133)
..++++|++++|++. .+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+.. +++
T Consensus 13 ~~L~l~~l~~~~~~~---~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~ 87 (375)
T PRK09452 13 PLVELRGISKSFDGK---EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRH 87 (375)
T ss_pred ceEEEEEEEEEECCe---EEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCC
Confidence 358999999999743 489999999999999999999999999999999999999999999999999876654 468
Q ss_pred ceEEecCCCCccc-cHHHHHhcCCCC--CC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHH
Q 041277 439 MGLVSQEPALFAT-SIKENILFGKED--AS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIA 511 (1133)
Q Consensus 439 i~~v~Q~~~l~~~-ti~eni~~~~~~--~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iA 511 (1133)
||||+|++.+|+. ||+|||.|+... .+ .+++.++++..++.++.++.| .+||||||||++||
T Consensus 88 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----------~~LSgGq~QRVaLA 156 (375)
T PRK09452 88 VNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-----------HQLSGGQQQRVAIA 156 (375)
T ss_pred EEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHHHH
Confidence 9999999999965 999999987431 12 235666777777777776665 48999999999999
Q ss_pred HHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcccc
Q 041277 512 RAIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQAE 588 (1133)
Q Consensus 512 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 588 (1133)
|||+.+|++||||||||+||+.+++.+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|+++++...+
T Consensus 157 RaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p 236 (375)
T PRK09452 157 RAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEP 236 (375)
T ss_pred HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 999999999999999999999999999999998753 8999999999998765 9999999999999999999998644
Q ss_pred chhh
Q 041277 589 SGLY 592 (1133)
Q Consensus 589 ~~~~ 592 (1133)
...|
T Consensus 237 ~~~~ 240 (375)
T PRK09452 237 KNLF 240 (375)
T ss_pred ccHH
Confidence 4333
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=377.76 Aligned_cols=223 Identities=32% Similarity=0.509 Sum_probs=188.4
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.++++|++++|+++ ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.+
T Consensus 3 ~l~~~~l~~~~~~~---~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFGK---EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCCe---eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 48899999999743 489999999999999999999999999999999999999999999999999877777788899
Q ss_pred eEEecCCCCccccHHHHHhcCCCC--CCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhC
Q 041277 440 GLVSQEPALFATSIKENILFGKED--ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKA 517 (1133)
Q Consensus 440 ~~v~Q~~~l~~~ti~eni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 517 (1133)
+|++|++.+|+.|++||+.++... ...+++.+.++..++.+ ........+||||||||++||||++++
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNK----------EYATRDVKNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCH----------HHhhCCcccCCHHHHHHHHHHHHHhcC
Confidence 999999999989999999876321 11233444444444421 112334568999999999999999999
Q ss_pred CCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhccccchhhHH
Q 041277 518 PRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQAESGLYTS 594 (1133)
Q Consensus 518 ~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 594 (1133)
|+++||||||++||+.+++.+.+.|+++. .|+|+|++||+++.+.. ||+|++|++|++++.|+++++...+...|..
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~ 229 (241)
T PRK14250 150 PEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTK 229 (241)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCCCcHHHH
Confidence 99999999999999999999999999874 38999999999999875 9999999999999999999987633334444
Q ss_pred H
Q 041277 595 L 595 (1133)
Q Consensus 595 ~ 595 (1133)
.
T Consensus 230 ~ 230 (241)
T PRK14250 230 L 230 (241)
T ss_pred H
Confidence 3
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=380.47 Aligned_cols=217 Identities=29% Similarity=0.473 Sum_probs=186.8
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccC---CCccEEEECCeecCCCCHHHHh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYA---PLGGEIILDGVSIDKLQLKWLR 436 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~---~~~G~i~~~g~~~~~~~~~~~r 436 (1133)
.|+++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.+.+...+|
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 3789999999974 348999999999999999999999999999999999985 6999999999999888777888
Q ss_pred hhceEEecCCCCccccHHHHHhcCCCC--------CCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHH
Q 041277 437 SQMGLVSQEPALFATSIKENILFGKED--------ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRI 508 (1133)
Q Consensus 437 ~~i~~v~Q~~~l~~~ti~eni~~~~~~--------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 508 (1133)
+.++|+||++.+|+.|++||+.++... ...+++.++++..++.+++.. ...+.+.+||||||||+
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~qrv 151 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKD-------KLKQNALALSGGQQQRL 151 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhH-------HhcCCcccCCHHHHHHH
Confidence 899999999999999999999875310 011234455555555433322 23456679999999999
Q ss_pred HHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 509 AIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 509 ~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
+||||++++|+++||||||++||+.++..+.+.|.+..+++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 230 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFE 230 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999999988778999999999998865 99999999999999999999865
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=396.06 Aligned_cols=216 Identities=32% Similarity=0.532 Sum_probs=183.7
Q ss_pred EEEEEEEEEcCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHH---Hh
Q 041277 361 VEFKCVQFAYPSRP-ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKW---LR 436 (1133)
Q Consensus 361 i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~---~r 436 (1133)
|+++|++++|+... +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++..+ +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 68999999997311 246999999999999999999999999999999999999999999999999998876544 47
Q ss_pred hhceEEecCCCCcc-ccHHHHHhcCCC--CCCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHH
Q 041277 437 SQMGLVSQEPALFA-TSIKENILFGKE--DASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIA 509 (1133)
Q Consensus 437 ~~i~~v~Q~~~l~~-~ti~eni~~~~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~ 509 (1133)
++||||||++.+|. .|++||+.++.. ..+. +++.+.++..++.++. .....+||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKA-----------DRYPAQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------hCChhhCCHHHHHHHH
Confidence 78999999999986 599999987532 1222 2334444444444333 3345689999999999
Q ss_pred HHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 510 IARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 510 iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
|||||+++|++|||||||++||+.+++.+.+.|+++. .|+|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999999999874 38999999999999876 99999999999999999999976
Q ss_pred c
Q 041277 587 A 587 (1133)
Q Consensus 587 ~ 587 (1133)
.
T Consensus 231 ~ 231 (343)
T PRK11153 231 H 231 (343)
T ss_pred C
Confidence 4
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=395.97 Aligned_cols=217 Identities=29% Similarity=0.487 Sum_probs=185.9
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.|+++|++++|++. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.+. .+++|
T Consensus 2 ~L~i~~l~~~~~~~---~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 76 (353)
T PRK10851 2 SIEIANIKKSFGRT---QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKV 76 (353)
T ss_pred EEEEEEEEEEeCCe---EEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCE
Confidence 37899999999743 48999999999999999999999999999999999999999999999999977654 35689
Q ss_pred eEEecCCCCccc-cHHHHHhcCCCC------CC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHH
Q 041277 440 GLVSQEPALFAT-SIKENILFGKED------AS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRI 508 (1133)
Q Consensus 440 ~~v~Q~~~l~~~-ti~eni~~~~~~------~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 508 (1133)
+||+|++.+|+. |++||+.|+... .+ .+++.++++..++.++.++. ..+||||||||+
T Consensus 77 ~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----------~~~LSgGq~QRv 145 (353)
T PRK10851 77 GFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRY-----------PAQLSGGQKQRV 145 (353)
T ss_pred EEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCC-----------hhhCCHHHHHHH
Confidence 999999999975 999999987431 12 23455556666665544443 458999999999
Q ss_pred HHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhc
Q 041277 509 AIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELI 585 (1133)
Q Consensus 509 ~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 585 (1133)
+|||||+++|++||||||||+||+.+++.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 146 alArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 146 ALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999998753 7899999999998765 9999999999999999999997
Q ss_pred cccchhh
Q 041277 586 QAESGLY 592 (1133)
Q Consensus 586 ~~~~~~~ 592 (1133)
..+...|
T Consensus 226 ~~p~~~~ 232 (353)
T PRK10851 226 REPATRF 232 (353)
T ss_pred hCccchH
Confidence 6443333
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-43 Score=397.11 Aligned_cols=215 Identities=31% Similarity=0.499 Sum_probs=186.5
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCc--cEEEECCeecCCCCHHHHh
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLG--GEIILDGVSIDKLQLKWLR 436 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~--G~i~~~g~~~~~~~~~~~r 436 (1133)
+.|+++|++++|++. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++.+.+. .+
T Consensus 4 ~~l~~~~l~~~~~~~---~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~ 78 (362)
T TIGR03258 4 GGIRIDHLRVAYGAN---TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HK 78 (362)
T ss_pred eEEEEEEEEEEECCe---EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HH
Confidence 579999999999743 48999999999999999999999999999999999999999 999999999976655 35
Q ss_pred hhceEEecCCCCccc-cHHHHHhcCCC--CCC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHH
Q 041277 437 SQMGLVSQEPALFAT-SIKENILFGKE--DAS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIA 509 (1133)
Q Consensus 437 ~~i~~v~Q~~~l~~~-ti~eni~~~~~--~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~ 509 (1133)
++||||+|++.+|+. ||+|||.|+.. ... .+++.++++..++.++.++.| .+||||||||++
T Consensus 79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRva 147 (362)
T TIGR03258 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLP-----------AQLSGGMQQRIA 147 (362)
T ss_pred CCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCCh-----------hhCCHHHHHHHH
Confidence 689999999999965 99999998642 112 234555666666655555544 589999999999
Q ss_pred HHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC---CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhc
Q 041277 510 IARAIIKAPRILLLDEATSALDSESERVVQEALDKAVV---GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELI 585 (1133)
Q Consensus 510 iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~---~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 585 (1133)
|||||+.+|++||||||||+||+.+++.+.+.|+++.+ |.|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 148 LARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 148 IARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999988653 7899999999998765 9999999999999999999998
Q ss_pred cccc
Q 041277 586 QAES 589 (1133)
Q Consensus 586 ~~~~ 589 (1133)
..+.
T Consensus 228 ~~p~ 231 (362)
T TIGR03258 228 DAPA 231 (362)
T ss_pred hCcC
Confidence 6443
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=419.50 Aligned_cols=192 Identities=21% Similarity=0.298 Sum_probs=155.4
Q ss_pred EEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEE-----------ECCeecCCCCH
Q 041277 364 KCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEII-----------LDGVSIDKLQL 432 (1133)
Q Consensus 364 ~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~-----------~~g~~~~~~~~ 432 (1133)
++++++|+.+ ..+|++++ ++++||++||+||||||||||+++|+|+++|++|+|. ++|.++.++..
T Consensus 77 ~~~~~~yg~~--~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~ 153 (590)
T PRK13409 77 EEPVHRYGVN--GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFK 153 (590)
T ss_pred cCceEEecCC--ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHH
Confidence 3489999742 35899999 9999999999999999999999999999999999997 89988865432
Q ss_pred HH--Hhhh----ceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHH
Q 041277 433 KW--LRSQ----MGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQ 506 (1133)
Q Consensus 433 ~~--~r~~----i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 506 (1133)
+. .+.+ ++|++|.|.+|.+|++||+... ...+++.++++..++.+.. .....+|||||||
T Consensus 154 ~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~---~~~~~~~~~l~~l~l~~~~-----------~~~~~~LSgGe~q 219 (590)
T PRK13409 154 KLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV---DERGKLDEVVERLGLENIL-----------DRDISELSGGELQ 219 (590)
T ss_pred HHhccCcceeecccchhhhhhhhcchHHHHHHhh---hHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHH
Confidence 11 1122 4455566777888999999742 1223455555555554332 2334589999999
Q ss_pred HHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeC
Q 041277 507 RIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQD 572 (1133)
Q Consensus 507 ri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~ 572 (1133)
|++|||||+++|++||||||||+||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++
T Consensus 220 rv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~ 286 (590)
T PRK13409 220 RVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYG 286 (590)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 999999999999999999999999999999999999987668999999999999876 999999975
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=383.29 Aligned_cols=213 Identities=32% Similarity=0.561 Sum_probs=186.4
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
-|+++|++++|+.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+..+++++|
T Consensus 4 ~l~~~~l~~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKDG--TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCCC--CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 48999999999632 3499999999999999999999999999999999999999999999999999888878888899
Q ss_pred eEEecCC--CCccccHHHHHhcCCC--CCC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHH
Q 041277 440 GLVSQEP--ALFATSIKENILFGKE--DAS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIA 511 (1133)
Q Consensus 440 ~~v~Q~~--~l~~~ti~eni~~~~~--~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iA 511 (1133)
|||+|+| .++..|++||+.++.. ..+ .+++.++++..++.++..+.| .+||||||||++||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgG~~qrv~la 150 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP-----------YHLSYGQKKRVAIA 150 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh-----------hhCCHHHHHHHHHH
Confidence 9999998 5778899999998632 112 234566667777766655554 48999999999999
Q ss_pred HHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhh-cCCEEEEEeCCeEEeecCcchhc
Q 041277 512 RAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIR-NADVIAVVQDGQVMETGSHDELI 585 (1133)
Q Consensus 512 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 585 (1133)
|||+.+|++|||||||++||+.+...+.+.|+++. +|+|+|++||+++.+. .||+|++|++|++++.|+++++.
T Consensus 151 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 226 (274)
T PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT 226 (274)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHhc
Confidence 99999999999999999999999999999998874 4899999999999985 49999999999999999987653
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=397.58 Aligned_cols=213 Identities=23% Similarity=0.451 Sum_probs=189.4
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.|+++|++++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+++...++++|
T Consensus 3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 4889999999974 3599999999999999999999999999999999999999999999999999998888899999
Q ss_pred eEEecCCCC-ccccHHHHHhcCCCC----------CCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHH
Q 041277 440 GLVSQEPAL-FATSIKENILFGKED----------ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRI 508 (1133)
Q Consensus 440 ~~v~Q~~~l-~~~ti~eni~~~~~~----------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 508 (1133)
|||+|++.+ ++.|++||+.++... ...+++.++++..++.++.++ ...+||||||||+
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~-----------~~~~LSgGerQRv 148 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADR-----------PVTSLSGGERQRV 148 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHH
Confidence 999999987 567999999887421 113346667777777655443 3458999999999
Q ss_pred HHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 509 AIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 509 ~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
+|||||+++|++|||||||++||+.++..+++.|+++. +++|+|++||+++.+.. |||+++|++|++++.|++++++.
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~ 228 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLT 228 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhC
Confidence 99999999999999999999999999999999999875 58899999999999965 99999999999999999999886
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-42 Score=378.14 Aligned_cols=217 Identities=31% Similarity=0.515 Sum_probs=183.8
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCC-----ccEEEECCeecCCC--CHH
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPL-----GGEIILDGVSIDKL--QLK 433 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~-----~G~i~~~g~~~~~~--~~~ 433 (1133)
++++||+++|++. .+++|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++... +..
T Consensus 2 l~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYGEK---EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEECCe---eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 6899999999743 4899999999999999999999999999999999999998 99999999998753 345
Q ss_pred HHhhhceEEecCCCCccccHHHHHhcCCCC---CCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHH
Q 041277 434 WLRSQMGLVSQEPALFATSIKENILFGKED---ASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQ 506 (1133)
Q Consensus 434 ~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~---~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 506 (1133)
..+++++|+||++.+|+.|++||+.++... ... +++.++++..++.+++. ........+|||||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~q 151 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGGQQQ 151 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHHHHH
Confidence 667899999999999999999999875321 111 23444555555542221 2234455789999999
Q ss_pred HHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhc
Q 041277 507 RIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELI 585 (1133)
Q Consensus 507 ri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 585 (1133)
|++|||||+.+|+++||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988767899999999998865 9999999999999999999886
Q ss_pred cc
Q 041277 586 QA 587 (1133)
Q Consensus 586 ~~ 587 (1133)
..
T Consensus 232 ~~ 233 (247)
T TIGR00972 232 TN 233 (247)
T ss_pred hC
Confidence 53
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=385.82 Aligned_cols=208 Identities=32% Similarity=0.487 Sum_probs=177.2
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHH-Hhhh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKW-LRSQ 438 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~-~r~~ 438 (1133)
-++++|++++|+.- ++|+|+||++.+||++|++|.||||||||+|.|+|.|+|++|+|.+||+...-.++.+ ....
T Consensus 8 ll~~~~i~K~FggV---~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~G 84 (500)
T COG1129 8 LLELRGISKSFGGV---KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAG 84 (500)
T ss_pred eeeeecceEEcCCc---eeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCC
Confidence 47899999999854 4999999999999999999999999999999999999999999999999998777654 4567
Q ss_pred ceEEecCCCCccc-cHHHHHhcCCCCCC------HHHHHHHHHHhchHHHHHhCC--CcccccccCCCCCCChHHHHHHH
Q 041277 439 MGLVSQEPALFAT-SIKENILFGKEDAS------MEEVIEAAKASNAHNFIRQLP--QQYDTQVGERGVQMSGGQKQRIA 509 (1133)
Q Consensus 439 i~~v~Q~~~l~~~-ti~eni~~~~~~~~------~~~~~~~~~~~~~~~~i~~l~--~g~~t~~~~~g~~LSgGqkqri~ 509 (1133)
|+.|.||..|++. ||.|||.+|++... ..+..+.++. .+..+. ...++.++ +||+||||.|+
T Consensus 85 I~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~-----~l~~lg~~~~~~~~v~----~LsiaqrQ~Ve 155 (500)
T COG1129 85 IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARE-----LLARLGLDIDPDTLVG----DLSIAQRQMVE 155 (500)
T ss_pred cEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHH-----HHHHcCCCCChhhhhh----hCCHHHHHHHH
Confidence 9999999999966 99999999876332 2343333322 233332 12455554 79999999999
Q ss_pred HHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeec
Q 041277 510 IARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETG 579 (1133)
Q Consensus 510 iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 579 (1133)
||||+..+++|+|||||||+|+....+.+.+.+++++ +|.++|+||||++.+.. ||||.||.||+.+..+
T Consensus 156 IArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~ 227 (500)
T COG1129 156 IARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTR 227 (500)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeec
Confidence 9999999999999999999999999999999999876 69999999999999876 9999999999998654
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-42 Score=385.89 Aligned_cols=217 Identities=32% Similarity=0.522 Sum_probs=183.1
Q ss_pred EEEEEEEEEcCCCC--CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCC--HHHHh
Q 041277 361 VEFKCVQFAYPSRP--ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQ--LKWLR 436 (1133)
Q Consensus 361 i~~~~v~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~--~~~~r 436 (1133)
|+++||+++|+... .+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...++
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 78999999997421 135999999999999999999999999999999999999999999999999997654 35678
Q ss_pred hhceEEecCC--CCccccHHHHHhcCCC--CCCHH----HHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHH
Q 041277 437 SQMGLVSQEP--ALFATSIKENILFGKE--DASME----EVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRI 508 (1133)
Q Consensus 437 ~~i~~v~Q~~--~l~~~ti~eni~~~~~--~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 508 (1133)
++||||||+| .+|+.|++||+.++.. ..+.+ ++.++++.+++. +.+.....+.+||||||||+
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~---------~~~~~~~~~~~LSgGq~qrv 153 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLD---------YEDYKDKSPFELSGGQKRRV 153 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCC---------chhhccCCcccCCHHHHHHH
Confidence 8999999998 5778899999998632 12332 234444444442 11234455678999999999
Q ss_pred HHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhh-cCCEEEEEeCCeEEeecCcchhc
Q 041277 509 AIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIR-NADVIAVVQDGQVMETGSHDELI 585 (1133)
Q Consensus 509 ~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 585 (1133)
+|||||+.+|++|||||||++||+.++..+.+.|+++. .|+|+|++||+++.+. .||+|++|++|++++.|+++++.
T Consensus 154 ~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13637 154 AIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVF 233 (287)
T ss_pred HHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999999999875 3899999999999885 59999999999999999999886
Q ss_pred c
Q 041277 586 Q 586 (1133)
Q Consensus 586 ~ 586 (1133)
+
T Consensus 234 ~ 234 (287)
T PRK13637 234 K 234 (287)
T ss_pred h
Confidence 5
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-42 Score=385.13 Aligned_cols=216 Identities=25% Similarity=0.489 Sum_probs=182.1
Q ss_pred EEEEEEEEEcCCCCC--CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCC----CCHHH
Q 041277 361 VEFKCVQFAYPSRPE--SIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDK----LQLKW 434 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~--~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~----~~~~~ 434 (1133)
|+++||+|+|+.... +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||.++.. .....
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 789999999974321 258999999999999999999999999999999999999999999999999863 33556
Q ss_pred HhhhceEEecCC--CCccccHHHHHhcCCCC--CCHH----HHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHH
Q 041277 435 LRSQMGLVSQEP--ALFATSIKENILFGKED--ASME----EVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQ 506 (1133)
Q Consensus 435 ~r~~i~~v~Q~~--~l~~~ti~eni~~~~~~--~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 506 (1133)
+|+++|||+|+| .+|..|+.||+.|+... .+.+ ++.++++..++.+ ........+|||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~----------~~~~~~~~~LSgGqkq 151 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLAD----------EFWEKSPFELSGGQMR 151 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCh----------hhccCCcccCCHHHHH
Confidence 788999999998 78889999999987432 2222 2333444444421 1223445689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhh-cCCEEEEEeCCeEEeecCcchh
Q 041277 507 RIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIR-NADVIAVVQDGQVMETGSHDEL 584 (1133)
Q Consensus 507 ri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 584 (1133)
|++|||||+.+|++|||||||++||+.+++.+.+.++++. +|+|+|++||+++.+. .||+|++|++|+++++|+++++
T Consensus 152 rvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~ 231 (288)
T PRK13643 152 RVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDV 231 (288)
T ss_pred HHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999998875 5899999999999886 4999999999999999999998
Q ss_pred cc
Q 041277 585 IQ 586 (1133)
Q Consensus 585 ~~ 586 (1133)
..
T Consensus 232 ~~ 233 (288)
T PRK13643 232 FQ 233 (288)
T ss_pred Hc
Confidence 65
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-42 Score=375.95 Aligned_cols=210 Identities=31% Similarity=0.492 Sum_probs=178.7
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .+++++
T Consensus 3 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 77 (239)
T cd03296 3 IEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVG 77 (239)
T ss_pred EEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceE
Confidence 789999999974 349999999999999999999999999999999999999999999999999876543 256799
Q ss_pred EEecCCCCcc-ccHHHHHhcCCCCC------CH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHH
Q 041277 441 LVSQEPALFA-TSIKENILFGKEDA------SM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIA 509 (1133)
Q Consensus 441 ~v~Q~~~l~~-~ti~eni~~~~~~~------~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~ 509 (1133)
|++|+|.+|. .|++||+.++.... .. +++.++++..++.+.. .....+||||||||++
T Consensus 78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~ 146 (239)
T cd03296 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLA-----------DRYPAQLSGGQRQRVA 146 (239)
T ss_pred EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhh-----------hcChhhCCHHHHHHHH
Confidence 9999999986 59999998763211 11 2233444444444333 3344689999999999
Q ss_pred HHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 510 IARAIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 510 iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
|||||+.+|++|||||||++||+++++.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 147 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 99999999999999999999999999999999998743 7899999999998765 99999999999999999998865
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=372.69 Aligned_cols=203 Identities=31% Similarity=0.520 Sum_probs=173.9
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHH---HHhh
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLK---WLRS 437 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~---~~r~ 437 (1133)
++++|++++|++. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+.. .+|+
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 6899999999642 23589999999999999999999999999999999999999999999999998766543 4678
Q ss_pred hceEEecCCCCcc-ccHHHHHhcCCC------CCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHH
Q 041277 438 QMGLVSQEPALFA-TSIKENILFGKE------DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAI 510 (1133)
Q Consensus 438 ~i~~v~Q~~~l~~-~ti~eni~~~~~------~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~i 510 (1133)
+++|++|++.+|. .|++||+.++.. ....+++.++++..++.++..+.| .+||||||||++|
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~l 149 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALP-----------MQLSGGEQQRVAI 149 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHH
Confidence 8999999999886 499999987521 112345566667666665554443 5899999999999
Q ss_pred HHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeE
Q 041277 511 ARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQV 575 (1133)
Q Consensus 511 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i 575 (1133)
||||+.+|++|||||||++||+.+++.+.+.|+++. +++|+|+|||+++.+.. ||++++|++|++
T Consensus 150 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 150 ARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999998874 48999999999999875 999999999975
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-41 Score=371.94 Aligned_cols=208 Identities=28% Similarity=0.485 Sum_probs=175.3
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCH-HHHhhh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQL-KWLRSQ 438 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~-~~~r~~ 438 (1133)
.++++++++.||+ ..+++||||+|++||+.||+|.||+|||||+++|.|+|+|++|+|++||++++--++ +..|..
T Consensus 4 ~l~~~~itK~f~~---~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~G 80 (501)
T COG3845 4 ALEMRGITKRFPG---VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLG 80 (501)
T ss_pred eEEEeccEEEcCC---EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcC
Confidence 5899999999984 358999999999999999999999999999999999999999999999999976554 567788
Q ss_pred ceEEecCCCCccc-cHHHHHhcCCCCC-----CHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHH
Q 041277 439 MGLVSQEPALFAT-SIKENILFGKEDA-----SMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIAR 512 (1133)
Q Consensus 439 i~~v~Q~~~l~~~-ti~eni~~~~~~~-----~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iAR 512 (1133)
||+|.|++.|++. ||.|||.+|.+.. +..+..+ .+.+..+++ |++-...+....||-||||||.|-+
T Consensus 81 IGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~-----~i~~l~~~y--Gl~vdp~~~V~dLsVG~qQRVEIlK 153 (501)
T COG3845 81 IGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARA-----RIKELSERY--GLPVDPDAKVADLSVGEQQRVEILK 153 (501)
T ss_pred CcEEeeccccccccchhhhhhhcCccccccccCHHHHHH-----HHHHHHHHh--CCCCCccceeecCCcchhHHHHHHH
Confidence 9999999999976 9999999997632 2222221 112222222 2333333445579999999999999
Q ss_pred HHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEe
Q 041277 513 AIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVME 577 (1133)
Q Consensus 513 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~ 577 (1133)
||+++|++||||||||-|-|...+.+.+.++++. +|+|||+|||++..+.. |||+-||.+|+++.
T Consensus 154 aLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvg 220 (501)
T COG3845 154 ALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVG 220 (501)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEe
Confidence 9999999999999999999999999999999875 69999999999999987 99999999999864
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=377.20 Aligned_cols=221 Identities=25% Similarity=0.475 Sum_probs=183.1
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHH-hhhc
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWL-RSQM 439 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~-r~~i 439 (1133)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ ++.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 468999999974 348999999999999999999999999999999999999999999999999987776554 5679
Q ss_pred eEEecCCCCccc-cHHHHHhcCCCCCCHHHH-------HHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHH
Q 041277 440 GLVSQEPALFAT-SIKENILFGKEDASMEEV-------IEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIA 511 (1133)
Q Consensus 440 ~~v~Q~~~l~~~-ti~eni~~~~~~~~~~~~-------~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iA 511 (1133)
+|+||++.+|.. |++||+.++........+ ........+++.++.+ |++........+||||||||++||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la 155 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERV--GLADLADRPAGELSYGQQRRLEIA 155 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHc--CccchhhCChhhCCHHHHHHHHHH
Confidence 999999999886 999999876421110000 0000111223444444 445555666779999999999999
Q ss_pred HHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 512 RAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 512 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
||++.+|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 156 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (236)
T cd03219 156 RALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRN 232 (236)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhcc
Confidence 99999999999999999999999999999998875 68999999999999876 99999999999999999988764
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-42 Score=377.41 Aligned_cols=212 Identities=35% Similarity=0.571 Sum_probs=179.9
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCC---HHHHhh
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQ---LKWLRS 437 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~---~~~~r~ 437 (1133)
++++|++++|+++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPNG--KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCCc--cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 4689999999741 35999999999999999999999999999999999999999999999999998776 456778
Q ss_pred hceEEecCCCCcc-ccHHHHHhcCCCCC--------------CHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCCh
Q 041277 438 QMGLVSQEPALFA-TSIKENILFGKEDA--------------SMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSG 502 (1133)
Q Consensus 438 ~i~~v~Q~~~l~~-~ti~eni~~~~~~~--------------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSg 502 (1133)
.++|+||++.+|. .|++||+.++.... ..+++.++++..++ .......+.+|||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~ 147 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGL-----------LDKAYQRADQLSG 147 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCC-----------hhhhCCCcccCCH
Confidence 8999999998887 59999998753210 11223333333333 3334455679999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeec
Q 041277 503 GQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETG 579 (1133)
Q Consensus 503 Gqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 579 (1133)
|||||++||||++.+|++|||||||++||+.+++.+.+.|+++. .|+|+|++||+++.+.. ||++++|++|++++.|
T Consensus 148 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~ 227 (241)
T cd03256 148 GQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDG 227 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence 99999999999999999999999999999999999999999874 38999999999999884 9999999999999999
Q ss_pred Ccchhc
Q 041277 580 SHDELI 585 (1133)
Q Consensus 580 ~~~~l~ 585 (1133)
+++++.
T Consensus 228 ~~~~~~ 233 (241)
T cd03256 228 PPAELT 233 (241)
T ss_pred CHHHhh
Confidence 988863
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-42 Score=376.73 Aligned_cols=212 Identities=33% Similarity=0.528 Sum_probs=179.2
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCH---HHHhh
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQL---KWLRS 437 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~---~~~r~ 437 (1133)
|+++|++++|+. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 679999999962 2349999999999999999999999999999999999999999999999999877653 34678
Q ss_pred hceEEecCCCCcc-ccHHHHHhcCCCCC--------------CHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCCh
Q 041277 438 QMGLVSQEPALFA-TSIKENILFGKEDA--------------SMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSG 502 (1133)
Q Consensus 438 ~i~~v~Q~~~l~~-~ti~eni~~~~~~~--------------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSg 502 (1133)
+++|+||++.+|. .|++||+.++.... ..+++.++++..++.+ .....+.+|||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSg 148 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLAD-----------KAYQRADQLSG 148 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHh-----------hhcCCcccCCH
Confidence 8999999999886 59999998753210 1122333444444433 33445578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeec
Q 041277 503 GQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETG 579 (1133)
Q Consensus 503 Gqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 579 (1133)
|||||++|||||+.+|++|||||||++||+.+++.+.+.|+++. .++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 149 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~ 228 (243)
T TIGR02315 149 GQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDG 228 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999999874 37999999999999865 9999999999999999
Q ss_pred Ccchhc
Q 041277 580 SHDELI 585 (1133)
Q Consensus 580 ~~~~l~ 585 (1133)
+++++.
T Consensus 229 ~~~~~~ 234 (243)
T TIGR02315 229 APSELD 234 (243)
T ss_pred CHHHhC
Confidence 998863
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-42 Score=381.28 Aligned_cols=215 Identities=33% Similarity=0.579 Sum_probs=188.7
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
-++++||+++|+.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+...+++.|
T Consensus 5 ~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 38999999999642 23599999999999999999999999999999999999999999999999999888777788899
Q ss_pred eEEecCC--CCccccHHHHHhcCCCC--CC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHH
Q 041277 440 GLVSQEP--ALFATSIKENILFGKED--AS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIA 511 (1133)
Q Consensus 440 ~~v~Q~~--~l~~~ti~eni~~~~~~--~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iA 511 (1133)
+|++|++ .+++.|++|||.++... .+ .+++.++++..++.+++...| .+||||||||++||
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qrv~la 152 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREP-----------HRLSGGQKQRVAIA 152 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHH
Confidence 9999998 45677999999886321 12 234566677777776666554 48999999999999
Q ss_pred HHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhcc
Q 041277 512 RAIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 512 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
|||+.+|++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++..
T Consensus 153 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13635 153 GVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFK 229 (279)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999999999999999999999998753 799999999999988899999999999999999988875
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-42 Score=378.54 Aligned_cols=217 Identities=31% Similarity=0.520 Sum_probs=184.6
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccC-----CCccEEEECCeecCC--CCH
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYA-----PLGGEIILDGVSIDK--LQL 432 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~-----~~~G~i~~~g~~~~~--~~~ 432 (1133)
.|+++|++++|+++ ++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .+.
T Consensus 6 ~l~~~~l~~~~~~~---~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 6 KMEARGLSFFYGDF---QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred EEEEeeeEEEECCe---eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 58999999999743 48999999999999999999999999999999999975 689999999999864 344
Q ss_pred HHHhhhceEEecCCCCccccHHHHHhcCCC--CC-C----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHH
Q 041277 433 KWLRSQMGLVSQEPALFATSIKENILFGKE--DA-S----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQK 505 (1133)
Q Consensus 433 ~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~--~~-~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 505 (1133)
..+|++++|++|++.+|+.|++||+.++.. .. . .+++.++++..++.+.+. +.....+.+||||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq~ 155 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVK-------DRLHESALGLSGGQQ 155 (253)
T ss_pred HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCHHHH
Confidence 567889999999999998999999987531 11 1 234455555555543322 223455678999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchh
Q 041277 506 QRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584 (1133)
Q Consensus 506 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 584 (1133)
||++||||++.+|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999865 999999999999999999988
Q ss_pred cc
Q 041277 585 IQ 586 (1133)
Q Consensus 585 ~~ 586 (1133)
.+
T Consensus 236 ~~ 237 (253)
T PRK14242 236 FT 237 (253)
T ss_pred Hc
Confidence 75
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=371.03 Aligned_cols=203 Identities=35% Similarity=0.555 Sum_probs=172.4
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+. .+++++
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~ 75 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIG 75 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEE
Confidence 468999999974 348999999999999999999999999999999999999999999999999876543 467899
Q ss_pred EEecCCCCcc-ccHHHHHhcCCCC--CC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHH
Q 041277 441 LVSQEPALFA-TSIKENILFGKED--AS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARA 513 (1133)
Q Consensus 441 ~v~Q~~~l~~-~ti~eni~~~~~~--~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa 513 (1133)
|+||++.+|. .|++||+.++... .. .+++.++++..++.++..+ ...+||||||||++||||
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrl~la~a 144 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNR-----------YPHELSGGQQQRVALARA 144 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhc-----------ChhhCCHHHHHHHHHHHH
Confidence 9999998886 5999999875321 11 1234455555555444433 345899999999999999
Q ss_pred HhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeec
Q 041277 514 IIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETG 579 (1133)
Q Consensus 514 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 579 (1133)
|+.+|+++||||||++||+.+++.+.+.|+++. .|+|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 145 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 145 LAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999874 38999999999998865 9999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-42 Score=376.30 Aligned_cols=223 Identities=30% Similarity=0.432 Sum_probs=186.1
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCC-----CccEEEECCeecCC--CCH
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP-----LGGEIILDGVSIDK--LQL 432 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~-----~~G~i~~~g~~~~~--~~~ 432 (1133)
-++++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .+.
T Consensus 7 ~l~~~~l~~~~~~~---~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (254)
T PRK14273 7 IIETENLNLFYTDF---KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI 83 (254)
T ss_pred eEEEeeeEEEeCCc---eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence 58999999999743 489999999999999999999999999999999999997 48999999998853 234
Q ss_pred HHHhhhceEEecCCCCccccHHHHHhcCCCC---CC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHH
Q 041277 433 KWLRSQMGLVSQEPALFATSIKENILFGKED---AS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQK 505 (1133)
Q Consensus 433 ~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~---~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 505 (1133)
..+|++++|++|++.+|+.|++||+.++... .. .+++.++++.+++.+.+ ++.++ ..+.+||||||
T Consensus 84 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~----~~~~~LSgG~~ 156 (254)
T PRK14273 84 LELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV---KDKLN----TNALSLSGGQQ 156 (254)
T ss_pred HHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh---HHHHh----CCcccCCHHHH
Confidence 5678889999999999989999999876321 11 23344555555543222 12233 35678999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchh
Q 041277 506 QRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584 (1133)
Q Consensus 506 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 584 (1133)
||++|||||+++|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 236 (254)
T PRK14273 157 QRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDEL 236 (254)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999865 999999999999999999998
Q ss_pred ccccchhh
Q 041277 585 IQAESGLY 592 (1133)
Q Consensus 585 ~~~~~~~~ 592 (1133)
.+++...|
T Consensus 237 ~~~~~~~~ 244 (254)
T PRK14273 237 FFNPKNTK 244 (254)
T ss_pred HhCCCChH
Confidence 75433333
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-42 Score=371.13 Aligned_cols=211 Identities=29% Similarity=0.453 Sum_probs=178.7
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
|+++||+++|++. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...++++++
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEE
Confidence 4789999999742 13599999999999999999999999999999999999999999999999998754 356678899
Q ss_pred EEecCCCCc-cccHHHHHhcCCC--CCCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHH
Q 041277 441 LVSQEPALF-ATSIKENILFGKE--DASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARA 513 (1133)
Q Consensus 441 ~v~Q~~~l~-~~ti~eni~~~~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa 513 (1133)
|++|++.++ ..|++||+.++.. .... +++.++++..++.+.. .....+||||||||++||||
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la~a 147 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKA-----------NKRARTLSGGMKRKLSLAIA 147 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-----------hChhhhCCHHHHHHHHHHHH
Confidence 999999988 4699999987421 1111 2344445555544333 23345899999999999999
Q ss_pred HhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchh
Q 041277 514 IIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584 (1133)
Q Consensus 514 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 584 (1133)
++.+|+++||||||++||+.+++.+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 148 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 148 LIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 99999999999999999999999999999988777999999999999875 999999999999999988775
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-42 Score=395.31 Aligned_cols=213 Identities=30% Similarity=0.468 Sum_probs=183.9
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+.. +++|
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~~i 77 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGV 77 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HCCE
Confidence 4889999999974 3489999999999999999999999999999999999999999999999999876543 4679
Q ss_pred eEEecCCCCccc-cHHHHHhcCCC--CCC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHH
Q 041277 440 GLVSQEPALFAT-SIKENILFGKE--DAS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIAR 512 (1133)
Q Consensus 440 ~~v~Q~~~l~~~-ti~eni~~~~~--~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iAR 512 (1133)
|||+|++.+|+. |++||+.|+.. ... .+++.++++..++.++.++. ..+||||||||++|||
T Consensus 78 ~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~-----------~~~LSgGq~QRvaLAr 146 (369)
T PRK11000 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRK-----------PKALSGGQRQRVAIGR 146 (369)
T ss_pred EEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCC-----------hhhCCHHHHHHHHHHH
Confidence 999999999965 99999998642 112 23455566666665544443 3589999999999999
Q ss_pred HHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcccc
Q 041277 513 AIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQAE 588 (1133)
Q Consensus 513 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 588 (1133)
||+.+|++||||||||+||+.+++.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|++++.|+++++...+
T Consensus 147 aL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p 225 (369)
T PRK11000 147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 225 (369)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 9999999999999999999999999999998874 38999999999998765 9999999999999999999987643
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-42 Score=383.50 Aligned_cols=219 Identities=31% Similarity=0.553 Sum_probs=183.3
Q ss_pred EEEEEEEEEcCCCC--CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCC----CHHH
Q 041277 361 VEFKCVQFAYPSRP--ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKL----QLKW 434 (1133)
Q Consensus 361 i~~~~v~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~----~~~~ 434 (1133)
++++|++++|++.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++... +...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996422 13599999999999999999999999999999999999999999999999998653 3456
Q ss_pred HhhhceEEecCC--CCccccHHHHHhcCCCC--CCHHHHHHHHHHhchHHHHHhCCCcccc-cccCCCCCCChHHHHHHH
Q 041277 435 LRSQMGLVSQEP--ALFATSIKENILFGKED--ASMEEVIEAAKASNAHNFIRQLPQQYDT-QVGERGVQMSGGQKQRIA 509 (1133)
Q Consensus 435 ~r~~i~~v~Q~~--~l~~~ti~eni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~~~~~g~~LSgGqkqri~ 509 (1133)
+|++||||||+| .+|+.|++|||.++... .+.++..+. +.+.++.+ |+++ .....+.+||||||||++
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv~ 155 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNY-----AHRLLMDL--GFSRDVMSQSPFQMSGGQMRKIA 155 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhhhCCcccCCHHHHHHHH
Confidence 788999999997 57888999999986421 233222221 12333333 4442 344567799999999999
Q ss_pred HHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhh-cCCEEEEEeCCeEEeecCcchhcc
Q 041277 510 IARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIR-NADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 510 iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
|||||+.+|+++||||||++||+.++..+.+.++++. .|+|+|++||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 156 laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 156 IVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999999874 4899999999999886 499999999999999999998865
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-42 Score=376.83 Aligned_cols=220 Identities=33% Similarity=0.510 Sum_probs=186.4
Q ss_pred cccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccC-----CCccEEEECCeecCC--C
Q 041277 358 LGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYA-----PLGGEIILDGVSIDK--L 430 (1133)
Q Consensus 358 ~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~-----~~~G~i~~~g~~~~~--~ 430 (1133)
.+.|+++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .
T Consensus 11 ~~~l~~~~l~~~~~~~---~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 11 PSKIQVRNLNFYYGKF---HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred CceEEEEEEEEEeCCe---EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 3569999999999743 48999999999999999999999999999999999986 589999999999853 3
Q ss_pred CHHHHhhhceEEecCCCCccccHHHHHhcCCC---CCCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChH
Q 041277 431 QLKWLRSQMGLVSQEPALFATSIKENILFGKE---DASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGG 503 (1133)
Q Consensus 431 ~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~---~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG 503 (1133)
+...+|++++|++|++.+|+.|++||+.++.. ..+. +++.++++..++.+.+ .....+...+||||
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G 160 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEV-------KDKLHQSGYSLSGG 160 (260)
T ss_pred chHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhh-------HHHHhcCCCCCCHH
Confidence 45677889999999999999999999987532 1122 3344555555543222 22344566799999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcc
Q 041277 504 QKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHD 582 (1133)
Q Consensus 504 qkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 582 (1133)
||||++||||++.+|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 161 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 240 (260)
T PRK10744 161 QQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTD 240 (260)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999988778899999999999865 9999999999999999999
Q ss_pred hhccc
Q 041277 583 ELIQA 587 (1133)
Q Consensus 583 ~l~~~ 587 (1133)
++...
T Consensus 241 ~~~~~ 245 (260)
T PRK10744 241 TIFTK 245 (260)
T ss_pred HHHhC
Confidence 98753
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-42 Score=384.21 Aligned_cols=216 Identities=31% Similarity=0.508 Sum_probs=181.9
Q ss_pred EEEEEEEEEcCCCC--CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCC----CCHHH
Q 041277 361 VEFKCVQFAYPSRP--ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDK----LQLKW 434 (1133)
Q Consensus 361 i~~~~v~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~----~~~~~ 434 (1133)
++++|++++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .+...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999997421 1359999999999999999999999999999999999999999999999999863 23556
Q ss_pred HhhhceEEecCC--CCccccHHHHHhcCCCC--CCHH----HHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHH
Q 041277 435 LRSQMGLVSQEP--ALFATSIKENILFGKED--ASME----EVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQ 506 (1133)
Q Consensus 435 ~r~~i~~v~Q~~--~l~~~ti~eni~~~~~~--~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 506 (1133)
.|++||||+|+| .+|+.|++|||.|+... .+.+ ++.++++.+++.+. .....+.+|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~----------~~~~~~~~LSgGq~q 152 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEE----------LLARSPFELSGGQMR 152 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChh----------hhhCCcccCCHHHHH
Confidence 778899999998 67888999999986321 2222 33444455544311 123345689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcch
Q 041277 507 RIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDE 583 (1133)
Q Consensus 507 ri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 583 (1133)
|++|||||+.+|++|||||||++||+.+...+.+.|+++. .|.|+|++||+++.+.. ||||++|++|++++.|++++
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 232 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE 232 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999998874 38999999999999865 99999999999999999998
Q ss_pred hcc
Q 041277 584 LIQ 586 (1133)
Q Consensus 584 l~~ 586 (1133)
+.+
T Consensus 233 ~~~ 235 (290)
T PRK13634 233 IFA 235 (290)
T ss_pred Hhc
Confidence 865
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-42 Score=387.32 Aligned_cols=226 Identities=27% Similarity=0.354 Sum_probs=187.4
Q ss_pred cEEEEEEEEEcCCCC----------CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCC
Q 041277 360 EVEFKCVQFAYPSRP----------ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDK 429 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~----------~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~ 429 (1133)
-|+++|++++|+.+. ...+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 489999999996421 2458999999999999999999999999999999999999999999999999988
Q ss_pred CCHH---HHhhhceEEecCC--CCcc-ccHHHHHhcCC----CCCCHHH----HHHHHHHhchHHHHHhCCCcccccccC
Q 041277 430 LQLK---WLRSQMGLVSQEP--ALFA-TSIKENILFGK----EDASMEE----VIEAAKASNAHNFIRQLPQQYDTQVGE 495 (1133)
Q Consensus 430 ~~~~---~~r~~i~~v~Q~~--~l~~-~ti~eni~~~~----~~~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~~~~ 495 (1133)
++.. .+|++|+||+|+| .+++ .||.|||.++. +..+.++ +.++++.+++.+ .....
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~----------~~~~~ 157 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLP----------NLINR 157 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCh----------HHhcC
Confidence 8754 3567899999998 4664 69999997532 1123222 334444444411 12334
Q ss_pred CCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeC
Q 041277 496 RGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQD 572 (1133)
Q Consensus 496 ~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~ 572 (1133)
.+.+||||||||++|||||+.+|++||+||||++||+.++..+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++
T Consensus 158 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~ 237 (331)
T PRK15079 158 YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYL 237 (331)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 5568999999999999999999999999999999999999999999998753 8999999999999976 999999999
Q ss_pred CeEEeecCcchhccccchhhHHH
Q 041277 573 GQVMETGSHDELIQAESGLYTSL 595 (1133)
Q Consensus 573 G~i~~~g~~~~l~~~~~~~~~~~ 595 (1133)
|+|++.|+++++.++....|.+.
T Consensus 238 G~ive~g~~~~i~~~~~~py~~~ 260 (331)
T PRK15079 238 GHAVELGTYDEVYHNPLHPYTKA 260 (331)
T ss_pred CEEEEEcCHHHHHcCCCCHHHHH
Confidence 99999999999987555667653
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-42 Score=372.85 Aligned_cols=215 Identities=32% Similarity=0.533 Sum_probs=181.7
Q ss_pred EEEEEEEEEcCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHH---HHh
Q 041277 361 VEFKCVQFAYPSRP-ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLK---WLR 436 (1133)
Q Consensus 361 i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~---~~r 436 (1133)
|+++|++++|+++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. ..+
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 68999999997531 12599999999999999999999999999999999999999999999999998876543 347
Q ss_pred hhceEEecCCCCcc-ccHHHHHhcCCC--CCC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHH
Q 041277 437 SQMGLVSQEPALFA-TSIKENILFGKE--DAS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIA 509 (1133)
Q Consensus 437 ~~i~~v~Q~~~l~~-~ti~eni~~~~~--~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~ 509 (1133)
+.++|+||++.+|. .|++||+.++.. ... .+++.++++..++.+..+ ....+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKAD-----------AYPAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhh-----------cChhhCCHHHHHHHH
Confidence 78999999999997 599999987532 111 223444555555544433 344689999999999
Q ss_pred HHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-C-CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 510 IARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-V-GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 510 iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
||||++.+|+++||||||++||+.+++.+.+.|+++. + ++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 9999999999999999999999999999999999874 3 8999999999999875 99999999999999999888754
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-42 Score=383.51 Aligned_cols=215 Identities=25% Similarity=0.434 Sum_probs=180.9
Q ss_pred EEEEEEEEEcCCCC--CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCC---------
Q 041277 361 VEFKCVQFAYPSRP--ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDK--------- 429 (1133)
Q Consensus 361 i~~~~v~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~--------- 429 (1133)
|+++|++++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 78999999997432 1358999999999999999999999999999999999999999999999887632
Q ss_pred ---------------CCHHHHhhhceEEecCC--CCccccHHHHHhcCCCC--CCH----HHHHHHHHHhchH-HHHHhC
Q 041277 430 ---------------LQLKWLRSQMGLVSQEP--ALFATSIKENILFGKED--ASM----EEVIEAAKASNAH-NFIRQL 485 (1133)
Q Consensus 430 ---------------~~~~~~r~~i~~v~Q~~--~l~~~ti~eni~~~~~~--~~~----~~~~~~~~~~~~~-~~i~~l 485 (1133)
.+...+|++||||||+| .+|..||+|||.|+... ... +++.++++..++. ++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~---- 158 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESY---- 158 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhh----
Confidence 13456788999999986 67888999999987431 222 2344455555542 22
Q ss_pred CCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhh-c
Q 041277 486 PQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIR-N 563 (1133)
Q Consensus 486 ~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~ 563 (1133)
......+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+. .
T Consensus 159 -------~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~ 231 (305)
T PRK13651 159 -------LQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEW 231 (305)
T ss_pred -------hhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHh
Confidence 334456899999999999999999999999999999999999999999998874 4899999999999875 4
Q ss_pred CCEEEEEeCCeEEeecCcchhcc
Q 041277 564 ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 564 ~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
||||++|++|++++.|+++++.+
T Consensus 232 adrv~vl~~G~i~~~g~~~~~~~ 254 (305)
T PRK13651 232 TKRTIFFKDGKIIKDGDTYDILS 254 (305)
T ss_pred CCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999875
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=362.29 Aligned_cols=203 Identities=36% Similarity=0.596 Sum_probs=179.8
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhh
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 438 (1133)
+.++++|++++|+.. ..++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|++
T Consensus 5 ~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 5 GEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred CeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 469999999999743 2358999999999999999999999999999999999999999999999999988888788889
Q ss_pred ceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCC
Q 041277 439 MGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAP 518 (1133)
Q Consensus 439 i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~ 518 (1133)
|+||+|+|.+|++|++||+.+... ...+++.++++ +++++.+||||||||++||||++.+|
T Consensus 84 i~~v~q~~~~~~~tv~~~l~~~~~-~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~~p 144 (207)
T cd03369 84 LTIIPQDPTLFSGTIRSNLDPFDE-YSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLKRP 144 (207)
T ss_pred EEEEecCCcccCccHHHHhcccCC-CCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhhCC
Confidence 999999999999999999986532 33344333322 23456799999999999999999999
Q ss_pred CEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCc
Q 041277 519 RILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSH 581 (1133)
Q Consensus 519 ~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~ 581 (1133)
+++||||||++||+.+++.+.+.|++..+++|+|++||+++.+..||++++|++|++++.|++
T Consensus 145 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 145 RVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 999999999999999999999999988778999999999999878999999999999988763
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-42 Score=381.07 Aligned_cols=218 Identities=31% Similarity=0.496 Sum_probs=183.9
Q ss_pred EEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHH----hh
Q 041277 362 EFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWL----RS 437 (1133)
Q Consensus 362 ~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~----r~ 437 (1133)
.++|++++|++. .+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+ ++
T Consensus 26 ~~~~~~~~~~~~---~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTGQT---VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcCCc---eEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 466888888643 48999999999999999999999999999999999999999999999999987665443 35
Q ss_pred hceEEecCCCCcc-ccHHHHHhcCCC--CC----CHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHH
Q 041277 438 QMGLVSQEPALFA-TSIKENILFGKE--DA----SMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAI 510 (1133)
Q Consensus 438 ~i~~v~Q~~~l~~-~ti~eni~~~~~--~~----~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~i 510 (1133)
+++|++|++.+|. .|++||+.++.. .. ..+++.++++..++.+++.+.| .+||||||||++|
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrv~l 171 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP-----------DELSGGMQQRVGL 171 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc-----------ccCCHHHHHHHHH
Confidence 7999999999985 599999987521 11 1234556666667666555544 4899999999999
Q ss_pred HHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhccc
Q 041277 511 ARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQA 587 (1133)
Q Consensus 511 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 587 (1133)
|||++++|++|||||||++||+.+++.+.+.|.++. .|+|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 172 Aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 172 ARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999999998874 37999999999998865 999999999999999999998764
Q ss_pred cchhhH
Q 041277 588 ESGLYT 593 (1133)
Q Consensus 588 ~~~~~~ 593 (1133)
....|.
T Consensus 252 ~~~~~~ 257 (269)
T cd03294 252 PANDYV 257 (269)
T ss_pred cCcHHH
Confidence 444443
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-42 Score=378.11 Aligned_cols=219 Identities=32% Similarity=0.476 Sum_probs=186.1
Q ss_pred cccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCC-----CccEEEECCeecCC--C
Q 041277 358 LGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP-----LGGEIILDGVSIDK--L 430 (1133)
Q Consensus 358 ~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~-----~~G~i~~~g~~~~~--~ 430 (1133)
.+.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .
T Consensus 17 ~~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 17 EIKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 457999999999974 3589999999999999999999999999999999999975 89999999999864 3
Q ss_pred CHHHHhhhceEEecCCCCccccHHHHHhcCCC--CC--C----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCCh
Q 041277 431 QLKWLRSQMGLVSQEPALFATSIKENILFGKE--DA--S----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSG 502 (1133)
Q Consensus 431 ~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~--~~--~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSg 502 (1133)
+...+|++++|++|++.+|+.|++||+.++.. .. . .+++.++++..++.+++. +.....+.+|||
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSg 166 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEPGTGLSG 166 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCH
Confidence 45567889999999999998899999987531 10 1 233455555555543221 223445678999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCc
Q 041277 503 GQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSH 581 (1133)
Q Consensus 503 Gqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~ 581 (1133)
|||||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 167 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~ 246 (267)
T PRK14235 167 GQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDT 246 (267)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999988778899999999999865 999999999999999999
Q ss_pred chhcc
Q 041277 582 DELIQ 586 (1133)
Q Consensus 582 ~~l~~ 586 (1133)
+++..
T Consensus 247 ~~~~~ 251 (267)
T PRK14235 247 EKMFT 251 (267)
T ss_pred HHHHh
Confidence 98865
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-42 Score=366.14 Aligned_cols=199 Identities=30% Similarity=0.532 Sum_probs=171.8
Q ss_pred EEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceE
Q 041277 362 EFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGL 441 (1133)
Q Consensus 362 ~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 441 (1133)
+++|++++|++. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...+++++|
T Consensus 1 ~~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~ 75 (205)
T cd03226 1 RIENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGY 75 (205)
T ss_pred CcccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEE
Confidence 368999999741 348999999999999999999999999999999999999999999999998854 456678999
Q ss_pred EecCC--CCccccHHHHHhcCCCCC--CHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhC
Q 041277 442 VSQEP--ALFATSIKENILFGKEDA--SMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKA 517 (1133)
Q Consensus 442 v~Q~~--~l~~~ti~eni~~~~~~~--~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 517 (1133)
++|++ .++..|++||+.++.+.. ..+++.++++..++.++.++.| .+||||||||++||||++.+
T Consensus 76 ~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~~~ 144 (205)
T cd03226 76 VMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHP-----------LSLSGGQKQRLAIAAALLSG 144 (205)
T ss_pred EecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCc-----------hhCCHHHHHHHHHHHHHHhC
Confidence 99998 467789999998864322 2345667777777766554444 48999999999999999999
Q ss_pred CCEEEEeCcccCCChHHHHHHHHHHHHH-hCCCeEEEEecCcchhhc-CCEEEEEeCCeEE
Q 041277 518 PRILLLDEATSALDSESERVVQEALDKA-VVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVM 576 (1133)
Q Consensus 518 ~~illlDE~ts~lD~~~~~~i~~~l~~~-~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~ 576 (1133)
|+++||||||++||+.+++.+.+.|++. .+++|+|++||+++.+.. ||++++|++|+++
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 145 KDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999999887 458999999999999875 9999999999975
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-42 Score=393.40 Aligned_cols=204 Identities=36% Similarity=0.573 Sum_probs=175.6
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHH----hhhceEEecCCCCccc-c
Q 041277 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWL----RSQMGLVSQEPALFAT-S 452 (1133)
Q Consensus 378 ~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~----r~~i~~v~Q~~~l~~~-t 452 (1133)
+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+ +++++||+|++.+|+. |
T Consensus 43 ~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~T 122 (400)
T PRK10070 43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMT 122 (400)
T ss_pred EEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCC
Confidence 7999999999999999999999999999999999999999999999999988776543 3579999999999964 9
Q ss_pred HHHHHhcCCC--CCC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCc
Q 041277 453 IKENILFGKE--DAS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEA 526 (1133)
Q Consensus 453 i~eni~~~~~--~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ 526 (1133)
++||+.++.. ... .+++.++++..++.++..+.| .+||||||||++|||||+.+|++||||||
T Consensus 123 v~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~-----------~~LSgGq~QRv~LArAL~~~P~iLLLDEP 191 (400)
T PRK10070 123 VLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP-----------DELSGGMRQRVGLARALAINPDILLMDEA 191 (400)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc-----------ccCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 9999998632 111 234556666666655555444 58999999999999999999999999999
Q ss_pred ccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhccccchhh
Q 041277 527 TSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQAESGLY 592 (1133)
Q Consensus 527 ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 592 (1133)
|++||+.+++.+++.|.++. .++|+|++||+++.+.. ||+|++|++|++++.|+++++...+...|
T Consensus 192 ts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~~~~~ 260 (400)
T PRK10070 192 FSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDY 260 (400)
T ss_pred CccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCcccHH
Confidence 99999999999999998874 48999999999998865 99999999999999999999876443334
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-42 Score=368.69 Aligned_cols=216 Identities=27% Similarity=0.452 Sum_probs=178.5
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHH-hhhc
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWL-RSQM 439 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~-r~~i 439 (1133)
|+++||+++|++. ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.... ++++
T Consensus 1 l~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGKS---QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCCe---eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 4789999999743 48999999999999999999999999999999999999999999999999987776554 5679
Q ss_pred eEEecCCCCccc-cHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCC
Q 041277 440 GLVSQEPALFAT-SIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAP 518 (1133)
Q Consensus 440 ~~v~Q~~~l~~~-ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~ 518 (1133)
+|+||++.+|.. |++||+.++.......+..+. +.+.++.++ +++........+||||||||++||||++.+|
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~-----~~~~l~~~~-~l~~~~~~~~~~LS~G~~qrv~laral~~~p 151 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKAR-----LERVYELFP-RLKERRKQLAGTLSGGEQQMLAIARALMSRP 151 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcCchhHHHH-----HHHHHHHHH-hhhhhhhCchhhCCHHHHHHHHHHHHHhcCC
Confidence 999999999986 999999886432211111111 111222221 1222334556789999999999999999999
Q ss_pred CEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhc
Q 041277 519 RILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELI 585 (1133)
Q Consensus 519 ~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 585 (1133)
+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 152 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 152 KLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 9999999999999999999999998875 58999999999998766 9999999999999999887764
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-42 Score=374.05 Aligned_cols=217 Identities=30% Similarity=0.538 Sum_probs=181.0
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
++++||+++|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4689999999751 34899999999999999999999999999999999999999999999999998877777788999
Q ss_pred EEecCCCCcc-ccHHHHHhcCCC--CCCHHHHHHHHHHhchHHHHHhCCCcccc--cccCCCCCCChHHHHHHHHHHHHh
Q 041277 441 LVSQEPALFA-TSIKENILFGKE--DASMEEVIEAAKASNAHNFIRQLPQQYDT--QVGERGVQMSGGQKQRIAIARAII 515 (1133)
Q Consensus 441 ~v~Q~~~l~~-~ti~eni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t--~~~~~g~~LSgGqkqri~iARal~ 515 (1133)
|+||++.+|. .|++||+.++.. ....++.. ..+.+.++.+ |+.. ...+.+.+||||||||++||||++
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~l--~l~~~~~~~~~~~~LS~G~~qrv~laral~ 151 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIR-----ERADELLALV--GLDPAEFADRYPHELSGGQQQRVGVARALA 151 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CCCcHHHHhcChhhCCHHHHHHHHHHHHHh
Confidence 9999999986 599999987531 11111111 1112233333 2221 334556789999999999999999
Q ss_pred hCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 516 KAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 516 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
++|+++||||||++||+.+++.+.+.|+++. .|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 152 ~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 225 (242)
T cd03295 152 ADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILR 225 (242)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHc
Confidence 9999999999999999999999999999875 38999999999998765 99999999999999999988865
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-42 Score=366.09 Aligned_cols=203 Identities=25% Similarity=0.429 Sum_probs=175.9
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
|+++|++++|+++ ++++|+||++++| +++|+||||||||||+++|+|+++|++|+|.++|.++.+.+ ..++++++
T Consensus 1 i~~~~~~~~~~~~---~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 75 (211)
T cd03264 1 LQLENLTKRYGKK---RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIG 75 (211)
T ss_pred CEEEEEEEEECCE---EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheE
Confidence 5789999999643 4899999999999 99999999999999999999999999999999999987766 66788999
Q ss_pred EEecCCCCccc-cHHHHHhcCCC--CCC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHH
Q 041277 441 LVSQEPALFAT-SIKENILFGKE--DAS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARA 513 (1133)
Q Consensus 441 ~v~Q~~~l~~~-ti~eni~~~~~--~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa 513 (1133)
|++|++.+|.. |++||+.+... ... .+++.++++..++.++.+. ...+||||||||++||||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la~a 144 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKK-----------KIGSLSGGMRRRVGIAQA 144 (211)
T ss_pred EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhC-----------chhhCCHHHHHHHHHHHH
Confidence 99999999876 99999986321 111 2345566666666554433 235899999999999999
Q ss_pred HhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeec
Q 041277 514 IIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETG 579 (1133)
Q Consensus 514 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 579 (1133)
++++|+++||||||++||+.+++.+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 145 LVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999988767999999999999865 9999999999998765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-42 Score=367.81 Aligned_cols=209 Identities=24% Similarity=0.408 Sum_probs=178.6
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
|+++|++++|+++ ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...++++++
T Consensus 1 i~~~~~~~~~~~~---~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 76 (220)
T cd03265 1 IEVENLVKKYGDF---EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIG 76 (220)
T ss_pred CEEEEEEEEECCE---EeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEE
Confidence 5789999999743 499999999999999999999999999999999999999999999999988653 356678899
Q ss_pred EEecCCCCccc-cHHHHHhcCCC--CC----CHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHH
Q 041277 441 LVSQEPALFAT-SIKENILFGKE--DA----SMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARA 513 (1133)
Q Consensus 441 ~v~Q~~~l~~~-ti~eni~~~~~--~~----~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa 513 (1133)
|++|++.+++. |++||+.++.. .. ..+++.++++..++.+..+.. ..+||||||||++||||
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qr~~la~a 145 (220)
T cd03265 77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRL-----------VKTYSGGMRRRLEIARS 145 (220)
T ss_pred EecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-----------hhhCCHHHHHHHHHHHH
Confidence 99999998875 99999987421 11 123455666666665544433 35899999999999999
Q ss_pred HhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-C-CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchh
Q 041277 514 IIKAPRILLLDEATSALDSESERVVQEALDKAV-V-GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584 (1133)
Q Consensus 514 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 584 (1133)
++.+|+++||||||++||+++.+.+.+.|.++. + ++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 146 LVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 999999999999999999999999999998864 3 7899999999999876 999999999999999987764
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=378.01 Aligned_cols=216 Identities=28% Similarity=0.481 Sum_probs=187.2
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
-|+++|++++|++....++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+...+++.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999743334589999999999999999999999999999999999999999999999999877777788899
Q ss_pred eEEecCCC--CccccHHHHHhcCCC--CCCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHH
Q 041277 440 GLVSQEPA--LFATSIKENILFGKE--DASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIA 511 (1133)
Q Consensus 440 ~~v~Q~~~--l~~~ti~eni~~~~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iA 511 (1133)
+|++|+|. ++..|+.|||.++.. .... +++.++++.+++.++.... ..+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTRE-----------PARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCC-----------cccCCHHHHHHHHHH
Confidence 99999984 567899999987532 1222 2345566666666554433 358999999999999
Q ss_pred HHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhcc
Q 041277 512 RAIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 512 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
|||+++|+++||||||++||+.+.+.+.+.++++.+ |+|+|++||+++.+..||+|++|++|++++.|+++++..
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFA 229 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999988753 899999999999988899999999999999999999875
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-42 Score=391.81 Aligned_cols=218 Identities=31% Similarity=0.527 Sum_probs=186.2
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhh
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 438 (1133)
..|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+. .++.
T Consensus 18 ~~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 92 (377)
T PRK11607 18 PLLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRP 92 (377)
T ss_pred ceEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCC
Confidence 35999999999974 348999999999999999999999999999999999999999999999999987654 4678
Q ss_pred ceEEecCCCCccc-cHHHHHhcCCC--CCCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHH
Q 041277 439 MGLVSQEPALFAT-SIKENILFGKE--DASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIA 511 (1133)
Q Consensus 439 i~~v~Q~~~l~~~-ti~eni~~~~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iA 511 (1133)
||||+|++.+|+. |++|||.|+.. ..+. +++.+.++..++.++.++.| .+||||||||++||
T Consensus 93 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----------~~LSgGq~QRVaLA 161 (377)
T PRK11607 93 INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKP-----------HQLSGGQRQRVALA 161 (377)
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHH
Confidence 9999999999975 99999998743 1222 34455566666655444443 58999999999999
Q ss_pred HHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcccc
Q 041277 512 RAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQAE 588 (1133)
Q Consensus 512 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 588 (1133)
|||+.+|++||||||||+||+.+++.+.+.|+++. .+.|+|+|||+++.+.. ||+|++|++|++++.|+++++...+
T Consensus 162 RAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p 241 (377)
T PRK11607 162 RSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHP 241 (377)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCC
Confidence 99999999999999999999999999998887764 37999999999998765 9999999999999999999998644
Q ss_pred chhh
Q 041277 589 SGLY 592 (1133)
Q Consensus 589 ~~~~ 592 (1133)
...|
T Consensus 242 ~~~~ 245 (377)
T PRK11607 242 TTRY 245 (377)
T ss_pred ccHH
Confidence 4333
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-42 Score=345.93 Aligned_cols=220 Identities=26% Similarity=0.445 Sum_probs=189.8
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHH-hhh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWL-RSQ 438 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~-r~~ 438 (1133)
-++++|++..|+.. ++|+++||++++||+++++||||+||||++++|+|+.+|.+|+|.++|+|+...+++.. |..
T Consensus 3 mL~v~~l~~~YG~~---~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 3 MLEVENLSAGYGKI---QALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred ceeEEeEeecccce---eEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence 37899999999853 59999999999999999999999999999999999999999999999999999987765 567
Q ss_pred ceEEecCCCCccc-cHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhC
Q 041277 439 MGLVSQEPALFAT-SIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKA 517 (1133)
Q Consensus 439 i~~v~Q~~~l~~~-ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 517 (1133)
|+||||.-.+|+. ||+||+.+|......++. ....+++..+-+| .+......++.+|||||||.+||||||+.+
T Consensus 80 i~~VPegR~iF~~LTVeENL~~g~~~~~~~~~----~~~~~e~v~~lFP-~Lker~~~~aG~LSGGEQQMLAiaRALm~~ 154 (237)
T COG0410 80 IAYVPEGRRIFPRLTVEENLLLGAYARRDKEA----QERDLEEVYELFP-RLKERRNQRAGTLSGGEQQMLAIARALMSR 154 (237)
T ss_pred eEeCcccccchhhCcHHHHHhhhhhccccccc----ccccHHHHHHHCh-hHHHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence 9999999999976 999999987432221111 1111333445556 366667788899999999999999999999
Q ss_pred CCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhccc
Q 041277 518 PRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQA 587 (1133)
Q Consensus 518 ~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 587 (1133)
|++|+|||||.+|-|.-.+.|.+.|+++.+ +.||++|.++...... |||.+||++|+|+.+|+.+||.++
T Consensus 155 PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~ 227 (237)
T COG0410 155 PKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227 (237)
T ss_pred CCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence 999999999999999999999999999874 6799999999998765 999999999999999999999873
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-41 Score=370.79 Aligned_cols=240 Identities=26% Similarity=0.418 Sum_probs=202.0
Q ss_pred HHHHHHhccCCCCCCCCCcccccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHh
Q 041277 332 ERIMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQR 411 (1133)
Q Consensus 332 ~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~ 411 (1133)
+.+.+++..+++.+. ..+.....+.|+++|+++.. +++|+|+||+|++||+++|+||||||||||+++|+|
T Consensus 15 ~~~~~~~~~~~~~~~----~~~~~~~~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~G 85 (282)
T cd03291 15 EGFGELLEKAKQENN----DRKHSSDDNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILG 85 (282)
T ss_pred HHHHHHHhccccccc----ccccCCCCCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 456666665543221 22233345679999999952 248999999999999999999999999999999999
Q ss_pred ccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccc
Q 041277 412 FYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDT 491 (1133)
Q Consensus 412 ~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t 491 (1133)
+++|++|+|.++| .|+|++|++.+|+.|++||+.++.. ....++.++++..++.+.+..+|.++++
T Consensus 86 l~~p~~G~I~i~g-------------~i~yv~q~~~l~~~tv~enl~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~ 151 (282)
T cd03291 86 ELEPSEGKIKHSG-------------RISFSSQFSWIMPGTIKENIIFGVS-YDEYRYKSVVKACQLEEDITKFPEKDNT 151 (282)
T ss_pred CCCCCCcEEEECC-------------EEEEEeCcccccccCHHHHhhcccc-cCHHHHHHHHHHhCCHHHHHhccccccc
Confidence 9999999999998 4999999999999999999998643 2334556667777888899999999999
Q ss_pred cccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHH-HHHhCCCeEEEEecCcchhhcCCEEEEE
Q 041277 492 QVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEAL-DKAVVGRTTIIIAHRLSTIRNADVIAVV 570 (1133)
Q Consensus 492 ~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l-~~~~~~~t~i~itH~~~~~~~~d~i~~l 570 (1133)
.+++.+.+||||||||++|||||+.+|++|||||||++||+.++..+.+.+ +...+++|+|++||+++.+..||++++|
T Consensus 152 ~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l 231 (282)
T cd03291 152 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILIL 231 (282)
T ss_pred eecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999999888754 5555689999999999998889999999
Q ss_pred eCCeEEeecCcchhccccchhhHHH
Q 041277 571 QDGQVMETGSHDELIQAESGLYTSL 595 (1133)
Q Consensus 571 ~~G~i~~~g~~~~l~~~~~~~~~~~ 595 (1133)
++|++++.|+++++.+. ...|...
T Consensus 232 ~~G~i~~~g~~~~~~~~-~~~~~~~ 255 (282)
T cd03291 232 HEGSSYFYGTFSELQSL-RPDFSSK 255 (282)
T ss_pred ECCEEEEECCHHHHHhc-chHHHHH
Confidence 99999999999998752 3344433
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=378.80 Aligned_cols=214 Identities=29% Similarity=0.494 Sum_probs=183.7
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecC--CCCHHHHhh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSID--KLQLKWLRS 437 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~--~~~~~~~r~ 437 (1133)
-|+++|++++|++ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|+
T Consensus 5 ~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 4899999999963 235999999999999999999999999999999999999999999999999984 234566788
Q ss_pred hceEEecCC--CCccccHHHHHhcCCC--CCCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHH
Q 041277 438 QMGLVSQEP--ALFATSIKENILFGKE--DASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIA 509 (1133)
Q Consensus 438 ~i~~v~Q~~--~l~~~ti~eni~~~~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~ 509 (1133)
.+||+||+| .+++.|++||+.++.. ..+. +++.++++..++.++. ...+.+||||||||++
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~LS~G~~qrl~ 151 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLK-----------DKPTHCLSFGQKKRVA 151 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhh-----------hCCcccCCHHHHHHHH
Confidence 999999998 5678899999987532 1122 3345555666655433 3345689999999999
Q ss_pred HHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 510 IARAIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 510 iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
|||||+.+|++|||||||++||+.++..+.+.|+++.+ |+|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 152 laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 152 IAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999988753 8999999999999874 99999999999999999999876
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-42 Score=368.52 Aligned_cols=204 Identities=34% Similarity=0.484 Sum_probs=170.9
Q ss_pred EEEEEEEEEcCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHH----HH
Q 041277 361 VEFKCVQFAYPSRP-ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLK----WL 435 (1133)
Q Consensus 361 i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~----~~ 435 (1133)
|+++|++++|++.. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ..
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 47899999997421 13599999999999999999999999999999999999999999999999998876643 24
Q ss_pred hhhceEEecCCCCccc-cHHHHHhcCCCC--CC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHH
Q 041277 436 RSQMGLVSQEPALFAT-SIKENILFGKED--AS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRI 508 (1133)
Q Consensus 436 r~~i~~v~Q~~~l~~~-ti~eni~~~~~~--~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 508 (1133)
+++++|++|++.+|.. |++||+.++... .. .+++.++++..++.+ .......+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGD-----------RLNHYPSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCch-----------hhhcChhhcCHHHHHHH
Confidence 5689999999999876 999999885321 11 123344444444433 33444568999999999
Q ss_pred HHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhcCCEEEEEeCCeE
Q 041277 509 AIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRNADVIAVVQDGQV 575 (1133)
Q Consensus 509 ~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i 575 (1133)
+||||++.+|++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+..||++++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999999999999998754 8999999999998878999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=377.19 Aligned_cols=223 Identities=26% Similarity=0.424 Sum_probs=184.8
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHH---HHh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLK---WLR 436 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~---~~r 436 (1133)
-|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .++
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (269)
T PRK11831 7 LVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83 (269)
T ss_pred eEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence 4899999999964 3489999999999999999999999999999999999999999999999998776543 356
Q ss_pred hhceEEecCCCCccc-cHHHHHhcCCC---CCCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHH
Q 041277 437 SQMGLVSQEPALFAT-SIKENILFGKE---DASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRI 508 (1133)
Q Consensus 437 ~~i~~v~Q~~~l~~~-ti~eni~~~~~---~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 508 (1133)
++++|++|++.+|+. |++||+.++.. ..+. +++.+.++..++.+.. .....+||||||||+
T Consensus 84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGq~qrv 152 (269)
T PRK11831 84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAA-----------KLMPSELSGGMARRA 152 (269)
T ss_pred hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhh-----------hCChhhCCHHHHHHH
Confidence 789999999999976 99999986421 1112 1233344444443322 334468999999999
Q ss_pred HHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhc
Q 041277 509 AIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELI 585 (1133)
Q Consensus 509 ~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 585 (1133)
+||||++.+|+++||||||++||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 153 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 153 ALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999999874 37999999999998876 9999999999999999999987
Q ss_pred cccchhhHHHH
Q 041277 586 QAESGLYTSLV 596 (1133)
Q Consensus 586 ~~~~~~~~~~~ 596 (1133)
+.....+..++
T Consensus 233 ~~~~~~~~~~~ 243 (269)
T PRK11831 233 ANPDPRVRQFL 243 (269)
T ss_pred cCCcHHHHHHH
Confidence 63333344444
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=373.43 Aligned_cols=218 Identities=29% Similarity=0.440 Sum_probs=184.3
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCC-----CccEEEECCeecCCCCHHH
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP-----LGGEIILDGVSIDKLQLKW 434 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~-----~~G~i~~~g~~~~~~~~~~ 434 (1133)
.++++|++++|++. ++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.+.+...
T Consensus 3 ~l~~~~l~~~~~~~---~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFGQV---EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEECCe---eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 48899999999743 489999999999999999999999999999999999974 6999999999998877778
Q ss_pred HhhhceEEecCCCCc-cccHHHHHhcCCCC----CC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHH
Q 041277 435 LRSQMGLVSQEPALF-ATSIKENILFGKED----AS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQK 505 (1133)
Q Consensus 435 ~r~~i~~v~Q~~~l~-~~ti~eni~~~~~~----~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 505 (1133)
+|+.|+|++|++.++ ..|++||+.++... .. .+++.++++..++.+.+. ........+||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~ 152 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK-------DRLDAPAGKLSGGQQ 152 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCCcccCCHHHH
Confidence 888999999999766 56999999875321 11 123444555554432211 123344568999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchh
Q 041277 506 QRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584 (1133)
Q Consensus 506 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 584 (1133)
||++||||++++|+++||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREV 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHH
Confidence 9999999999999999999999999999999999999988778999999999998865 999999999999999999998
Q ss_pred ccc
Q 041277 585 IQA 587 (1133)
Q Consensus 585 ~~~ 587 (1133)
.+.
T Consensus 233 ~~~ 235 (250)
T PRK14247 233 FTN 235 (250)
T ss_pred HcC
Confidence 653
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=363.86 Aligned_cols=203 Identities=26% Similarity=0.421 Sum_probs=177.1
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
|+++|++++|++ .++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ..++++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~ 75 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIG 75 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEE
Confidence 478999999964 3599999999999999999999999999999999999999999999999988654 45677899
Q ss_pred EEecCCCCcc-ccHHHHHhcCCC--CCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhC
Q 041277 441 LVSQEPALFA-TSIKENILFGKE--DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKA 517 (1133)
Q Consensus 441 ~v~Q~~~l~~-~ti~eni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 517 (1133)
|+||++.++. .|++||+.++.. ..+.+++.++++..++.+...+. ..+||||||||++||||++.+
T Consensus 76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~la~al~~~ 144 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKK-----------VKGFSLGMKQRLGIALALLGN 144 (208)
T ss_pred EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhh-----------HhhCCHHHHHHHHHHHHHhcC
Confidence 9999998885 699999987532 22455677777777776655443 358999999999999999999
Q ss_pred CCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeec
Q 041277 518 PRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETG 579 (1133)
Q Consensus 518 ~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 579 (1133)
|+++||||||++||+.+++.+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 145 PDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999998865 58999999999999875 9999999999998765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-42 Score=389.81 Aligned_cols=207 Identities=26% Similarity=0.414 Sum_probs=175.6
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCe----ecCCCCHHHH---h-hhceEEecCCCC
Q 041277 377 IIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGV----SIDKLQLKWL---R-SQMGLVSQEPAL 448 (1133)
Q Consensus 377 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~----~~~~~~~~~~---r-~~i~~v~Q~~~l 448 (1133)
.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|. ++...+...+ | ++|+||+|++.+
T Consensus 38 ~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l 117 (382)
T TIGR03415 38 VGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFAL 117 (382)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcC
Confidence 4899999999999999999999999999999999999999999999996 5666655444 3 579999999999
Q ss_pred cc-ccHHHHHhcCCC--CCC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEE
Q 041277 449 FA-TSIKENILFGKE--DAS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRIL 521 (1133)
Q Consensus 449 ~~-~ti~eni~~~~~--~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~il 521 (1133)
|+ .|++||+.++.. ..+ .+++.++++..++.++.+.. ..+||||||||++|||||+.+|+||
T Consensus 118 ~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~-----------~~~LSgGq~QRV~LARALa~~P~IL 186 (382)
T TIGR03415 118 MPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKK-----------PGELSGGMQQRVGLARAFAMDADIL 186 (382)
T ss_pred CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 97 699999998642 111 23455666666665554443 3589999999999999999999999
Q ss_pred EEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhccccchhhHH
Q 041277 522 LLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQAESGLYTS 594 (1133)
Q Consensus 522 llDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 594 (1133)
|||||||+||+.+++.+++.|.++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|++++++..+...|.+
T Consensus 187 LlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p~~~~~~ 262 (382)
T TIGR03415 187 LMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYVA 262 (382)
T ss_pred EEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCcchHHHH
Confidence 99999999999999999999988753 8999999999998754 9999999999999999999998644444543
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-42 Score=383.44 Aligned_cols=212 Identities=26% Similarity=0.475 Sum_probs=180.1
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.|+++|++++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...|++|
T Consensus 7 ~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i 82 (306)
T PRK13537 7 PIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV 82 (306)
T ss_pred eEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence 5899999999974 35999999999999999999999999999999999999999999999999987654 4578899
Q ss_pred eEEecCCCCcc-ccHHHHHhcCCC--CCCHH----HHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHH
Q 041277 440 GLVSQEPALFA-TSIKENILFGKE--DASME----EVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIAR 512 (1133)
Q Consensus 440 ~~v~Q~~~l~~-~ti~eni~~~~~--~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iAR 512 (1133)
|||||++.++. .|++||+.+... ..+.. ++.++++..++ ++..++.+ .+||||||||++|||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~~----~~LS~G~~qrl~la~ 151 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKL-------ENKADAKV----GELSGGMKRRLTLAR 151 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-------chHhcCch----hhCCHHHHHHHHHHH
Confidence 99999999986 599999985321 11222 22233333333 22333333 479999999999999
Q ss_pred HHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 513 AIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 513 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
||+++|++|||||||++||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 152 aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 152 ALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred HHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999875 48999999999999976 99999999999999999999865
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=387.29 Aligned_cols=199 Identities=29% Similarity=0.476 Sum_probs=158.9
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.|+++|++++|+.+ ++|+|+||++.+|+++||||+||||||||+++|+|...|++|+|...+. -++
T Consensus 3 ~i~~~~ls~~~g~~---~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~~v 68 (530)
T COG0488 3 MITLENLSLAYGDR---PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LRV 68 (530)
T ss_pred eEEEeeeEEeeCCc---eeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------ceE
Confidence 47899999999754 5999999999999999999999999999999999999999999998762 269
Q ss_pred eEEecCCCCccc-cHHHHHhcCCCCCC--HHHHHHHHH------------------H-------hchHHHHHhCCCcccc
Q 041277 440 GLVSQEPALFAT-SIKENILFGKEDAS--MEEVIEAAK------------------A-------SNAHNFIRQLPQQYDT 491 (1133)
Q Consensus 440 ~~v~Q~~~l~~~-ti~eni~~~~~~~~--~~~~~~~~~------------------~-------~~~~~~i~~l~~g~~t 491 (1133)
+|++|++.+.+. ||.+.+.-+..... ..+..++.. . +.+...+..+ |+..
T Consensus 69 ~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gL--g~~~ 146 (530)
T COG0488 69 GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGL--GFPD 146 (530)
T ss_pred EEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcC--CCCc
Confidence 999999999866 99999987653211 011111100 0 1112222322 2222
Q ss_pred cccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEE
Q 041277 492 QVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVV 570 (1133)
Q Consensus 492 ~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l 570 (1133)
. .....+||||||.|++|||||+.+|++|||||||++||.++..-+.+.|.+. +| |+|+||||-+++.. |++|+-+
T Consensus 147 ~-~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~-~g-tviiVSHDR~FLd~V~t~I~~l 223 (530)
T COG0488 147 E-DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY-PG-TVIVVSHDRYFLDNVATHILEL 223 (530)
T ss_pred c-cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC-CC-cEEEEeCCHHHHHHHhhheEEe
Confidence 2 3344589999999999999999999999999999999999999999998754 45 99999999999987 9999999
Q ss_pred eCCeEEe
Q 041277 571 QDGQVME 577 (1133)
Q Consensus 571 ~~G~i~~ 577 (1133)
++|++..
T Consensus 224 d~g~l~~ 230 (530)
T COG0488 224 DRGKLTP 230 (530)
T ss_pred cCCceeE
Confidence 9997753
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=369.71 Aligned_cols=210 Identities=27% Similarity=0.446 Sum_probs=176.7
Q ss_pred cEEEEEEEEEcCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHH---H
Q 041277 360 EVEFKCVQFAYPSRP-ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKW---L 435 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~---~ 435 (1133)
-++++||+++|+++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 389999999997432 135999999999999999999999999999999999999999999999999998877543 3
Q ss_pred h-hhceEEecCCCCccc-cHHHHHhcCCC--CCCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHH
Q 041277 436 R-SQMGLVSQEPALFAT-SIKENILFGKE--DASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQR 507 (1133)
Q Consensus 436 r-~~i~~v~Q~~~l~~~-ti~eni~~~~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqr 507 (1133)
| +.++|++|++.+|+. |++||+.++.. .... +++.++++..++. ........+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLE-----------HRANHRPSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-----------hhhhCChhhCCHHHHHH
Confidence 3 579999999998875 99999987421 1111 2334444444443 33344556899999999
Q ss_pred HHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhcCCEEEEEeCCeEEeecC
Q 041277 508 IAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGS 580 (1133)
Q Consensus 508 i~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~ 580 (1133)
++||||++.+|++|||||||++||+.+++.+.+.|+++. +|+|+|++||+++.+..+|++++|++|++++.|+
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999999874 4899999999999998889999999999998775
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=375.15 Aligned_cols=217 Identities=29% Similarity=0.441 Sum_probs=182.8
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCC-----CccEEEECCeecC--CCCH
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP-----LGGEIILDGVSID--KLQL 432 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~-----~~G~i~~~g~~~~--~~~~ 432 (1133)
.|+++|++++|+++ ++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++. +.+.
T Consensus 4 ~l~~~~l~~~~~~~---~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYGSN---HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeCCe---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 48899999999743 489999999999999999999999999999999999987 4999999999987 4455
Q ss_pred HHHhhhceEEecCCCCccc-cHHHHHhcCCC--C--CCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChH
Q 041277 433 KWLRSQMGLVSQEPALFAT-SIKENILFGKE--D--ASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGG 503 (1133)
Q Consensus 433 ~~~r~~i~~v~Q~~~l~~~-ti~eni~~~~~--~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG 503 (1133)
..+|++++|++|++.+|.. |++||+.++.. . ... +++.++++..++.+.+. ........+||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 153 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVK-------DRLNDYPSNLSGG 153 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchh-------hhhccChhhCCHH
Confidence 5678899999999999976 99999987531 1 011 23344444444432221 2234556789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcc
Q 041277 504 QKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHD 582 (1133)
Q Consensus 504 qkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 582 (1133)
||||++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 154 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 233 (253)
T PRK14267 154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTR 233 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999988777999999999999865 9999999999999999999
Q ss_pred hhcc
Q 041277 583 ELIQ 586 (1133)
Q Consensus 583 ~l~~ 586 (1133)
++.+
T Consensus 234 ~~~~ 237 (253)
T PRK14267 234 KVFE 237 (253)
T ss_pred HHHh
Confidence 9865
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=373.54 Aligned_cols=218 Identities=30% Similarity=0.464 Sum_probs=183.3
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccC--C---CccEEEECCeecCC--CCH
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYA--P---LGGEIILDGVSIDK--LQL 432 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~--~---~~G~i~~~g~~~~~--~~~ 432 (1133)
-|+++|++++|+.+ ++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|+++.. .+.
T Consensus 12 ~l~i~~l~~~~~~~---~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 12 VYQINGMNLWYGQH---HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred eEEEeeEEEEECCe---eeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 48999999999743 48999999999999999999999999999999999997 3 58999999999864 344
Q ss_pred HHHhhhceEEecCCCCccccHHHHHhcCCCC---CCHH----HHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHH
Q 041277 433 KWLRSQMGLVSQEPALFATSIKENILFGKED---ASME----EVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQK 505 (1133)
Q Consensus 433 ~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~---~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 505 (1133)
..+|+.++|+||++.+|+.|++||+.++... ...+ ++.++++..++.+++ .+.....+.+||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~l~~~~~~LS~Gq~ 161 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEV-------KDRLHTQALSLSGGQQ 161 (259)
T ss_pred HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------hhhhhCCcccCCHHHH
Confidence 5678899999999999989999999875321 1122 233344444443322 1233456678999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchh
Q 041277 506 QRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584 (1133)
Q Consensus 506 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 584 (1133)
||++||||++++|+++||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 162 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 241 (259)
T PRK14274 162 QRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKM 241 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999865 999999999999999999998
Q ss_pred ccc
Q 041277 585 IQA 587 (1133)
Q Consensus 585 ~~~ 587 (1133)
.++
T Consensus 242 ~~~ 244 (259)
T PRK14274 242 FSN 244 (259)
T ss_pred hhC
Confidence 653
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=373.33 Aligned_cols=214 Identities=29% Similarity=0.476 Sum_probs=180.8
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCC---------
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQ--------- 431 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~--------- 431 (1133)
|+++||+++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+++
T Consensus 1 i~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGIL---TVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCCe---eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 5789999999743 4899999999999999999999999999999999999999999999999987543
Q ss_pred ----HHHHhhhceEEecCCCCcc-ccHHHHHhcCCC---CCCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCC
Q 041277 432 ----LKWLRSQMGLVSQEPALFA-TSIKENILFGKE---DASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQ 499 (1133)
Q Consensus 432 ----~~~~r~~i~~v~Q~~~l~~-~ti~eni~~~~~---~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~ 499 (1133)
...+|+.++|++|++.+|. .|++||+.++.. .... +++.++++..++.+. ....+.+
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~ 146 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADK-----------ADHMPAQ 146 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhH-----------hhcChhh
Confidence 2356788999999999885 699999987521 1111 233444444444433 3444568
Q ss_pred CChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEE
Q 041277 500 MSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVM 576 (1133)
Q Consensus 500 LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~ 576 (1133)
||||||||++||||++++|+++||||||++||+.++..+.+.|++..+ ++|+|++||+++.+.. ||++++|++|+++
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T TIGR03005 147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIV 226 (252)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999998743 8999999999999865 9999999999999
Q ss_pred eecCcchhcccc
Q 041277 577 ETGSHDELIQAE 588 (1133)
Q Consensus 577 ~~g~~~~l~~~~ 588 (1133)
+.|+++++.+..
T Consensus 227 ~~g~~~~~~~~~ 238 (252)
T TIGR03005 227 EQGKPDEIFRQP 238 (252)
T ss_pred EeCCHHHHhcCC
Confidence 999999987543
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=365.36 Aligned_cols=207 Identities=24% Similarity=0.431 Sum_probs=175.2
Q ss_pred EEEEEEEEEcCCCCC-CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 361 VEFKCVQFAYPSRPE-SIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~-~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
|+++|++++|++... .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ...++++++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 689999999975311 159999999999999999999999999999999999999999999999999875 345678899
Q ss_pred eEEecCCCCccc-cHHHHHhcCCC--CCC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHH
Q 041277 440 GLVSQEPALFAT-SIKENILFGKE--DAS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIAR 512 (1133)
Q Consensus 440 ~~v~Q~~~l~~~-ti~eni~~~~~--~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iAR 512 (1133)
+|++|++.+|.. |++||+.+... ... .+++.++++..++.+.+ .....+||||||||++|||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~lar 149 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELL-----------DRRVGGFSTGMRQKVAIAR 149 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-----------hhhhhhcCHHHHHHHHHHH
Confidence 999999999985 99999976421 111 23344455555554433 3445689999999999999
Q ss_pred HHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeec
Q 041277 513 AIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETG 579 (1133)
Q Consensus 513 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 579 (1133)
|++.+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 150 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 150 ALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999999998874 58999999999998865 9999999999998764
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=375.38 Aligned_cols=213 Identities=30% Similarity=0.468 Sum_probs=186.3
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.++++|++++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+++.+
T Consensus 11 ~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 11 TFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred eEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 5899999999974 3589999999999999999999999999999999999999999999999999887777888899
Q ss_pred eEEecCCCCccc-cHHHHHhcCCCC----------CCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHH
Q 041277 440 GLVSQEPALFAT-SIKENILFGKED----------ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRI 508 (1133)
Q Consensus 440 ~~v~Q~~~l~~~-ti~eni~~~~~~----------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 508 (1133)
+|++|++.++.. |+.||+.++... ...+++.++++.+++.+++...| .+||||||||+
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv 156 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----------DSLSGGERQRA 156 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----------ccCCHHHHHHH
Confidence 999999877655 999999875311 11234566677777665544443 48999999999
Q ss_pred HHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhc
Q 041277 509 AIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELI 585 (1133)
Q Consensus 509 ~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 585 (1133)
+||||++.+|++|||||||++||+.+.+.+.+.|.++. .++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 157 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 157 WIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 99999999999999999999999999999999999874 37999999999999865 9999999999999999999886
Q ss_pred c
Q 041277 586 Q 586 (1133)
Q Consensus 586 ~ 586 (1133)
+
T Consensus 237 ~ 237 (265)
T PRK10575 237 R 237 (265)
T ss_pred C
Confidence 5
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=369.11 Aligned_cols=216 Identities=26% Similarity=0.457 Sum_probs=180.5
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHH-hhhc
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWL-RSQM 439 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~-r~~i 439 (1133)
++++|++++|+++ ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.... ++.+
T Consensus 1 l~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGKR---KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCCE---EeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 4789999999743 48999999999999999999999999999999999999999999999999887765543 5679
Q ss_pred eEEecCCCCccc-cHHHHHhcCCCC--CCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhh
Q 041277 440 GLVSQEPALFAT-SIKENILFGKED--ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIK 516 (1133)
Q Consensus 440 ~~v~Q~~~l~~~-ti~eni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~ 516 (1133)
+|++|++.+|+. |++||+.++.+. ...++..+ .+++.++.+ |++........+||||||||++||||++.
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~ 150 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKEREE-----KLEELLEEF--HITHLRKSKASSLSGGERRRVEIARALAT 150 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999986 999999875321 11111111 122333333 34444455667999999999999999999
Q ss_pred CCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 517 APRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 517 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
+|++|||||||++||+.+++.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 151 NPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 999999999999999999999999998875 48999999999987765 99999999999999999888754
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=372.80 Aligned_cols=220 Identities=25% Similarity=0.473 Sum_probs=187.9
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+..++++.++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 3 LRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 789999999974 35999999999999999999999999999999999999999999999999998877777888899
Q ss_pred EEecCCCCccc-cHHHHHhcCCCC----------CCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHH
Q 041277 441 LVSQEPALFAT-SIKENILFGKED----------ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIA 509 (1133)
Q Consensus 441 ~v~Q~~~l~~~-ti~eni~~~~~~----------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~ 509 (1133)
|++|++.++.+ |++||+.++... ...+++.++++..++.+..+. ....||||||||++
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~ 148 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADR-----------RLTDLSGGQRQRAF 148 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcC-----------CcccCCHHHHHHHH
Confidence 99999988876 999999886311 112344555665565544333 34689999999999
Q ss_pred HHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhccc
Q 041277 510 IARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQA 587 (1133)
Q Consensus 510 iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 587 (1133)
||||++.+|++|||||||++||+++++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~- 227 (255)
T PRK11231 149 LAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT- 227 (255)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC-
Confidence 9999999999999999999999999999999998865 48999999999999875 99999999999999999998865
Q ss_pred cchhhHHHH
Q 041277 588 ESGLYTSLV 596 (1133)
Q Consensus 588 ~~~~~~~~~ 596 (1133)
...+.+.+
T Consensus 228 -~~~~~~~~ 235 (255)
T PRK11231 228 -PGLLRTVF 235 (255)
T ss_pred -HHHHHHHh
Confidence 23444444
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=381.65 Aligned_cols=226 Identities=28% Similarity=0.406 Sum_probs=187.1
Q ss_pred cEEEEEEEEEcCCCC-------CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCH
Q 041277 360 EVEFKCVQFAYPSRP-------ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQL 432 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~-------~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~ 432 (1133)
-|+++|++++|+.+. ...+|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++..++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 489999999996321 2468999999999999999999999999999999999999999999999999988765
Q ss_pred H---HHhhhceEEecCCC--Ccc-ccHHHHHhcCC---CCCC----HHHHHHHHHHhchHH-HHHhCCCcccccccCCCC
Q 041277 433 K---WLRSQMGLVSQEPA--LFA-TSIKENILFGK---EDAS----MEEVIEAAKASNAHN-FIRQLPQQYDTQVGERGV 498 (1133)
Q Consensus 433 ~---~~r~~i~~v~Q~~~--l~~-~ti~eni~~~~---~~~~----~~~~~~~~~~~~~~~-~i~~l~~g~~t~~~~~g~ 498 (1133)
. .+|++|+||+|+|. +++ .|+.+|+..+. .... .+++.++++.+++.+ .. ...+.
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~p~ 153 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHY-----------DRYPH 153 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHh-----------cCCCc
Confidence 3 46778999999983 555 38998886321 1111 234455555555532 22 23346
Q ss_pred CCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeE
Q 041277 499 QMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQV 575 (1133)
Q Consensus 499 ~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i 575 (1133)
+||||||||++|||||+.+|++||+||||++||+.++..+.+.|+++. .|.|+|+|||+++.+.. ||+|++|++|+|
T Consensus 154 ~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~i 233 (327)
T PRK11308 154 MFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRC 233 (327)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 899999999999999999999999999999999999999999998874 38999999999999976 999999999999
Q ss_pred EeecCcchhccccchhhHHHH
Q 041277 576 METGSHDELIQAESGLYTSLV 596 (1133)
Q Consensus 576 ~~~g~~~~l~~~~~~~~~~~~ 596 (1133)
+|.|+.+++.++....|.+..
T Consensus 234 ve~g~~~~~~~~p~hpyt~~l 254 (327)
T PRK11308 234 VEKGTKEQIFNNPRHPYTQAL 254 (327)
T ss_pred EEECCHHHHhcCCCCHHHHHH
Confidence 999999999875556676543
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=369.29 Aligned_cols=205 Identities=30% Similarity=0.460 Sum_probs=177.3
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhh
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 438 (1133)
..|+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .++++
T Consensus 11 ~~l~i~~l~~~~~~~---~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~ 82 (257)
T PRK11247 11 TPLLLNAVSKRYGER---TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EARED 82 (257)
T ss_pred CcEEEEEEEEEECCc---ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCc
Confidence 359999999999743 4899999999999999999999999999999999999999999999998763 45678
Q ss_pred ceEEecCCCCcc-ccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhC
Q 041277 439 MGLVSQEPALFA-TSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKA 517 (1133)
Q Consensus 439 i~~v~Q~~~l~~-~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 517 (1133)
++|++|++.+|+ .|++||+.++......+++.++++..++.+... ....+||||||||++|||||+++
T Consensus 83 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGqkqrl~laraL~~~ 151 (257)
T PRK11247 83 TRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRAN-----------EWPAALSGGQKQRVALARALIHR 151 (257)
T ss_pred eEEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhc-----------CChhhCCHHHHHHHHHHHHHhcC
Confidence 999999999987 599999998643222445566666666654433 34468999999999999999999
Q ss_pred CCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcc
Q 041277 518 PRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHD 582 (1133)
Q Consensus 518 ~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 582 (1133)
|+++||||||++||+.++..+.+.|+++. .++|+|++||+++.+.. ||+|++|++|+++++|+.+
T Consensus 152 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 152 PGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 99999999999999999999999998863 37999999999998865 9999999999999988765
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=373.74 Aligned_cols=213 Identities=28% Similarity=0.520 Sum_probs=182.6
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCC-HHHHhhhc
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQ-LKWLRSQM 439 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~-~~~~r~~i 439 (1133)
++++|++++|++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.+
T Consensus 2 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPDG--TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCCC--CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 6899999999632 34999999999999999999999999999999999999999999999999997765 35677889
Q ss_pred eEEecCCC--CccccHHHHHhcCCCC--CC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHH
Q 041277 440 GLVSQEPA--LFATSIKENILFGKED--AS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIA 511 (1133)
Q Consensus 440 ~~v~Q~~~--l~~~ti~eni~~~~~~--~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iA 511 (1133)
+|++|+|. ++..|++||+.++... .+ .+++.++++..++.++.. ..+..||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~qrv~la 148 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRH-----------RSPKTLSGGQGQCVALA 148 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhc-----------CCcccCCHHHHHHHHHH
Confidence 99999985 4667999999886321 12 223444555555544433 34468999999999999
Q ss_pred HHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhcc
Q 041277 512 RAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 512 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
|||+.+|+++||||||++||+.++..+.+.++++. +|+|+|++||+++.+..||+|++|++|++++.|+++++..
T Consensus 149 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 224 (274)
T PRK13644 149 GILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLS 224 (274)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999999999999998875 5899999999999997899999999999999999988765
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=370.52 Aligned_cols=218 Identities=32% Similarity=0.515 Sum_probs=183.6
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCC-----CccEEEECCeecCC--CC
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP-----LGGEIILDGVSIDK--LQ 431 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~-----~~G~i~~~g~~~~~--~~ 431 (1133)
+.|+++||+++|+++ ++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.+ .+
T Consensus 2 ~~l~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~ 78 (250)
T PRK14240 2 GKISVKDLDLFYGDF---QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78 (250)
T ss_pred CeEEEEEEEEEECCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 458999999999743 489999999999999999999999999999999999863 69999999999864 34
Q ss_pred HHHHhhhceEEecCCCCccccHHHHHhcCCC--CC-C----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHH
Q 041277 432 LKWLRSQMGLVSQEPALFATSIKENILFGKE--DA-S----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQ 504 (1133)
Q Consensus 432 ~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~--~~-~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 504 (1133)
...+|+.++|++|++.+|+.|++||+.++.. .. . .+++.++++..++.+.+. ......+.+|||||
T Consensus 79 ~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~ 151 (250)
T PRK14240 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK-------DRLKKSALGLSGGQ 151 (250)
T ss_pred hHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhH-------HHHhcCCCCCCHHH
Confidence 5567889999999999998999999987531 11 1 223444444544432221 22344567899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcch
Q 041277 505 KQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDE 583 (1133)
Q Consensus 505 kqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 583 (1133)
|||++||||++.+|+++||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 152 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (250)
T PRK14240 152 QQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVD 231 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988778999999999998865 99999999999999999998
Q ss_pred hcc
Q 041277 584 LIQ 586 (1133)
Q Consensus 584 l~~ 586 (1133)
+..
T Consensus 232 ~~~ 234 (250)
T PRK14240 232 LFT 234 (250)
T ss_pred HHh
Confidence 865
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=364.09 Aligned_cols=203 Identities=33% Similarity=0.544 Sum_probs=172.9
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
|+++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. +++++
T Consensus 1 i~~~~l~~~~~~~---~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~ 75 (213)
T cd03301 1 VELENVTKRFGNV---TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIA 75 (213)
T ss_pred CEEEeeEEEECCe---eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEE
Confidence 4789999999753 489999999999999999999999999999999999999999999999998765432 46799
Q ss_pred EEecCCCCcc-ccHHHHHhcCCC--CCCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHH
Q 041277 441 LVSQEPALFA-TSIKENILFGKE--DASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARA 513 (1133)
Q Consensus 441 ~v~Q~~~l~~-~ti~eni~~~~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa 513 (1133)
|++|++.+|. .|++||+.++.. .... +++.++++..++.+.+.. ...+||||||||++||||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qr~~lara 144 (213)
T cd03301 76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDR-----------KPKQLSGGQRQRVALGRA 144 (213)
T ss_pred EEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhC-----------ChhhCCHHHHHHHHHHHH
Confidence 9999999986 599999987521 1122 234445555555544443 345899999999999999
Q ss_pred HhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeec
Q 041277 514 IIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETG 579 (1133)
Q Consensus 514 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 579 (1133)
++.+|+++||||||++||+.+++.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 145 IVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999999874 38999999999998876 9999999999999875
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=376.32 Aligned_cols=216 Identities=31% Similarity=0.527 Sum_probs=186.7
Q ss_pred cEEEEEEEEEcCCCC---CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCC-HHHH
Q 041277 360 EVEFKCVQFAYPSRP---ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQ-LKWL 435 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~---~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~-~~~~ 435 (1133)
-++++|++++|++.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.. ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 489999999997421 245999999999999999999999999999999999999999999999999987643 3557
Q ss_pred hhhceEEecCCC--CccccHHHHHhcCCCC--CC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHH
Q 041277 436 RSQMGLVSQEPA--LFATSIKENILFGKED--AS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQR 507 (1133)
Q Consensus 436 r~~i~~v~Q~~~--l~~~ti~eni~~~~~~--~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqr 507 (1133)
++++||+||+|. ++..|+.||+.|+... .. .+++.++++.+++.++..+.| .+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP-----------HLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHH
Confidence 889999999984 6667999999986321 12 234566667777766655544 5899999999
Q ss_pred HHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhc
Q 041277 508 IAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELI 585 (1133)
Q Consensus 508 i~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 585 (1133)
++|||||+.+|+++||||||++||+.+++.+.+.|+++. .|+|+|++||+++.+..||++++|++|++++.|+++++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999999874 389999999999998789999999999999999999987
Q ss_pred c
Q 041277 586 Q 586 (1133)
Q Consensus 586 ~ 586 (1133)
.
T Consensus 233 ~ 233 (280)
T PRK13633 233 K 233 (280)
T ss_pred c
Confidence 5
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=366.55 Aligned_cols=206 Identities=31% Similarity=0.481 Sum_probs=173.9
Q ss_pred EEEEEEEEEcCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 361 VEFKCVQFAYPSRP-ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 361 i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
|+++|++++|++.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +++++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 46899999997421 1359999999999999999999999999999999999999999999999998863 35689
Q ss_pred eEEecCCCCcc-ccHHHHHhcCCC--CCC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHH
Q 041277 440 GLVSQEPALFA-TSIKENILFGKE--DAS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIAR 512 (1133)
Q Consensus 440 ~~v~Q~~~l~~-~ti~eni~~~~~--~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iAR 512 (1133)
+||+|++.+|. .|++||+.++.. ... .+++.++++..++.+++.+. ..+||||||||++|||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrl~la~ 144 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAY-----------PHQLSGGMRQRVALAR 144 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCC-----------cccCCHHHHHHHHHHH
Confidence 99999999987 599999987532 111 23445555555555444433 3589999999999999
Q ss_pred HHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEe--CCeEEeecCcc
Q 041277 513 AIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQ--DGQVMETGSHD 582 (1133)
Q Consensus 513 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~--~G~i~~~g~~~ 582 (1133)
|++.+|+++||||||++||+.+++.+.+.|+++. .++|+|++||+++.+.. ||++++|+ +|+++++++.+
T Consensus 145 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 145 ALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEec
Confidence 9999999999999999999999999999998873 37999999999998765 99999999 79999988753
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-41 Score=375.09 Aligned_cols=215 Identities=32% Similarity=0.551 Sum_probs=187.3
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCc---cEEEECCeecCCCCHHHHh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLG---GEIILDGVSIDKLQLKWLR 436 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~---G~i~~~g~~~~~~~~~~~r 436 (1133)
.|+++|++|+|++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++...+...++
T Consensus 5 ~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 5 IVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred eEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 58999999999643 2358999999999999999999999999999999999999998 8999999999877777778
Q ss_pred hhceEEecCCC--CccccHHHHHhcCCCC--CCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHH
Q 041277 437 SQMGLVSQEPA--LFATSIKENILFGKED--ASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRI 508 (1133)
Q Consensus 437 ~~i~~v~Q~~~--l~~~ti~eni~~~~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 508 (1133)
+++||++|+|. +++.|++||+.++.+. .+. +++.++++..++.++....| .+||||||||+
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LS~G~~qrv 152 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP-----------ANLSGGQKQRV 152 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHH
Confidence 89999999984 5678999999876322 222 33556677777766555444 58999999999
Q ss_pred HHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhcc
Q 041277 509 AIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 509 ~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
+|||||+.+|++|||||||++||+.+++.+.+.|+++.+ |+|+|++||+++.+..||++++|++|++++.|+++++..
T Consensus 153 ~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 153 AIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999999988753 899999999999987899999999999999999998865
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=373.70 Aligned_cols=225 Identities=28% Similarity=0.411 Sum_probs=183.2
Q ss_pred EEEEEEEEEcCCC------CCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHH
Q 041277 361 VEFKCVQFAYPSR------PESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKW 434 (1133)
Q Consensus 361 i~~~~v~~~y~~~------~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~ 434 (1133)
|+++||+++|+.. .++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999632 1346999999999999999999999999999999999999999999999999998776543
Q ss_pred ---HhhhceEEecCCC--Ccc-ccHHHHHhcCCC---CCC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCC
Q 041277 435 ---LRSQMGLVSQEPA--LFA-TSIKENILFGKE---DAS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMS 501 (1133)
Q Consensus 435 ---~r~~i~~v~Q~~~--l~~-~ti~eni~~~~~---~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LS 501 (1133)
+|+.|+|++|++. ++. .|++||+.++.. ... .+++.++++..++.+ ......+.+||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----------~~~~~~~~~LS 152 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRS----------EDADKLPRQLS 152 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCChhhCC
Confidence 5778999999983 443 599999975321 111 123333344333321 22344567899
Q ss_pred hHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEEee
Q 041277 502 GGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMET 578 (1133)
Q Consensus 502 gGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~ 578 (1133)
||||||++||||++.+|++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.
T Consensus 153 gGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 232 (265)
T TIGR02769 153 GGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEE 232 (265)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEE
Confidence 9999999999999999999999999999999999999999998753 8999999999999875 999999999999999
Q ss_pred cCcchhccccchhhHHH
Q 041277 579 GSHDELIQAESGLYTSL 595 (1133)
Q Consensus 579 g~~~~l~~~~~~~~~~~ 595 (1133)
|+++++...++..++.+
T Consensus 233 g~~~~~~~~~~~~~~~~ 249 (265)
T TIGR02769 233 CDVAQLLSFKHPAGRNL 249 (265)
T ss_pred CCHHHHcCCCCHHHHHH
Confidence 99999987433334434
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=373.07 Aligned_cols=219 Identities=31% Similarity=0.487 Sum_probs=184.2
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccC-----CCccEEEECCeecCC--CC
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYA-----PLGGEIILDGVSIDK--LQ 431 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~-----~~~G~i~~~g~~~~~--~~ 431 (1133)
..|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+
T Consensus 12 ~~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 12 IIISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred ceEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 45999999999974 348999999999999999999999999999999999987 689999999999863 45
Q ss_pred HHHHhhhceEEecCCCCccccHHHHHhcCCCC--CC---HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHH
Q 041277 432 LKWLRSQMGLVSQEPALFATSIKENILFGKED--AS---MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQ 506 (1133)
Q Consensus 432 ~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~--~~---~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 506 (1133)
...+|++++|++|++.+|..|++||+.++... .. .+++.++++..++.. +.++.......+|||||||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~G~~q 161 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWD-------ECKDKLNESGYSLSGGQQQ 161 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcc-------hhhhhhCCCcccCCHHHHH
Confidence 66778899999999999988999999976421 11 223344444444322 2223344556789999999
Q ss_pred HHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeC-----------Ce
Q 041277 507 RIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQD-----------GQ 574 (1133)
Q Consensus 507 ri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~-----------G~ 574 (1133)
|++|||||+++|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++ |+
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~ 241 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGY 241 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccce
Confidence 999999999999999999999999999999999999988778999999999998865 999999996 67
Q ss_pred EEeecCcchhccc
Q 041277 575 VMETGSHDELIQA 587 (1133)
Q Consensus 575 i~~~g~~~~l~~~ 587 (1133)
+++.|+++++.+.
T Consensus 242 ~~~~~~~~~~~~~ 254 (269)
T PRK14259 242 LVEFNETKKIFNS 254 (269)
T ss_pred EEEeCCHHHHHhC
Confidence 8999999998753
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-41 Score=358.11 Aligned_cols=200 Identities=36% Similarity=0.562 Sum_probs=180.3
Q ss_pred EEEEEEEEEcCCCCC--CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhh
Q 041277 361 VEFKCVQFAYPSRPE--SIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~--~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 438 (1133)
++++||+++|++..+ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 478999999975311 3599999999999999999999999999999999999999999999998 5
Q ss_pred ceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCC
Q 041277 439 MGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAP 518 (1133)
Q Consensus 439 i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~ 518 (1133)
|+|++|+|.+|+.|++||+.++.. ...++..++++.+++.+++..+|.|+++.+++.+.+||||||||++||||++.+|
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p 146 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKP-FDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDA 146 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCC-cCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999998643 3455677778888899999999999999999999999999999999999999999
Q ss_pred CEEEEeCcccCCChHHHHHHHH-HHHHHh-CCCeEEEEecCcchhhcCCEEEEEeCCe
Q 041277 519 RILLLDEATSALDSESERVVQE-ALDKAV-VGRTTIIIAHRLSTIRNADVIAVVQDGQ 574 (1133)
Q Consensus 519 ~illlDE~ts~lD~~~~~~i~~-~l~~~~-~~~t~i~itH~~~~~~~~d~i~~l~~G~ 574 (1133)
+++||||||++||+++.+.+.+ .+++.. +++|+|++||+++.+..||++++|++|+
T Consensus 147 ~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 147 DIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 9999999999999999888877 455553 4799999999999988899999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=369.42 Aligned_cols=212 Identities=31% Similarity=0.523 Sum_probs=180.1
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCC--HHHHhhh
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQ--LKWLRSQ 438 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~--~~~~r~~ 438 (1133)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...++++
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 689999999974 34899999999999999999999999999999999999999999999999987643 3566788
Q ss_pred ceEEecCCCCcc-ccHHHHHhcCCC---CCCHH----HHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHH
Q 041277 439 MGLVSQEPALFA-TSIKENILFGKE---DASME----EVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAI 510 (1133)
Q Consensus 439 i~~v~Q~~~l~~-~ti~eni~~~~~---~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~i 510 (1133)
++|++|++.++. .|++||+.++.. ..+.+ ++.++++..++ +........+||||||||++|
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LS~G~~qrv~l 147 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGL-----------AERAHHYPSELSGGQQQRVAI 147 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCC-----------hHHHhcChhhcCHHHHHHHHH
Confidence 999999998886 599999987531 11222 23333444433 333344556899999999999
Q ss_pred HHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 511 ARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 511 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
|||++.+|+++||||||++||++++..+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 225 (240)
T PRK09493 148 ARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIK 225 (240)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhc
Confidence 999999999999999999999999999999998875 48999999999999865 99999999999999999988865
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=373.93 Aligned_cols=215 Identities=31% Similarity=0.564 Sum_probs=184.6
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.++++|++++|++. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+++
T Consensus 7 ~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 7 MIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred EEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 58999999999632 24589999999999999999999999999999999999999999999999999877777888899
Q ss_pred eEEecCCC--CccccHHHHHhcCCC--CCCHH----HHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHH
Q 041277 440 GLVSQEPA--LFATSIKENILFGKE--DASME----EVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIA 511 (1133)
Q Consensus 440 ~~v~Q~~~--l~~~ti~eni~~~~~--~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iA 511 (1133)
+|++|+|. ++..|++||+.++.. ..+.+ .+.++++..++.+++.+. ..+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~la 154 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKE-----------PQNLSGGQKQRVAIA 154 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-----------cccCCHHHHHHHHHH
Confidence 99999983 456799999987532 12222 244555556665554443 468999999999999
Q ss_pred HHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-C-CCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhcc
Q 041277 512 RAIIKAPRILLLDEATSALDSESERVVQEALDKAV-V-GRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 512 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~-~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
|||+.+|++|||||||++||+.+.+.+.+.|+++. + ++|+|++||+++.+..||++++|++|++++.|+.+++.+
T Consensus 155 ral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 231 (271)
T PRK13632 155 SVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILN 231 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhc
Confidence 99999999999999999999999999999999875 3 589999999999887899999999999999999888765
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=374.95 Aligned_cols=213 Identities=27% Similarity=0.505 Sum_probs=185.2
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
++++|++++|+++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...++++++
T Consensus 4 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 4 IETRDLCYSYSGS--KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred EEEEEEEEEeCCC--CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 7899999999632 24899999999999999999999999999999999999999999999999998777777888999
Q ss_pred EEecCCC--CccccHHHHHhcCCC--CCCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHH
Q 041277 441 LVSQEPA--LFATSIKENILFGKE--DASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIAR 512 (1133)
Q Consensus 441 ~v~Q~~~--l~~~ti~eni~~~~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iAR 512 (1133)
||+|+|. +|+.|++||+.++.. ..+. +++.++++..++.+++.+.| ..||||||||++|||
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrl~lar 150 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVP-----------HHLSGGEKKRVAIAG 150 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHHHHHH
Confidence 9999983 677899999987532 1222 23556666666665554443 589999999999999
Q ss_pred HHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhh-cCCEEEEEeCCeEEeecCcchhcc
Q 041277 513 AIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIR-NADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 513 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
||+.+|++|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++++
T Consensus 151 aL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 227 (277)
T PRK13652 151 VIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFL 227 (277)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhc
Confidence 99999999999999999999999999999988753 899999999999986 599999999999999999999875
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-42 Score=334.39 Aligned_cols=212 Identities=27% Similarity=0.475 Sum_probs=183.0
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
+++++++++|++. ..+++|+||+++.||++||.|||||||||+|+.|..++.|++|+|++||.|.... +...|++||
T Consensus 2 l~v~~l~K~y~~~--v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~-p~~vrr~IG 78 (245)
T COG4555 2 LEVTDLTKSYGSK--VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRD-PSFVRRKIG 78 (245)
T ss_pred eeeeehhhhccCH--HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccC-hHHHhhhcc
Confidence 6789999999852 3489999999999999999999999999999999999999999999999998764 456788999
Q ss_pred EEecCCCCccc-cHHHHHhcCCC------CCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHH
Q 041277 441 LVSQEPALFAT-SIKENILFGKE------DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARA 513 (1133)
Q Consensus 441 ~v~Q~~~l~~~-ti~eni~~~~~------~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa 513 (1133)
+++-+.-++.. |++|||.|-.. .....++.+..+..++.+.+++ +..++|-|+||||+||||
T Consensus 79 Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~r-----------Rv~~~S~G~kqkV~iARA 147 (245)
T COG4555 79 VLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDR-----------RVGEFSTGMKQKVAIARA 147 (245)
T ss_pred eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHH-----------HHhhhchhhHHHHHHHHH
Confidence 99987778755 99999987321 1123445555555555555443 334799999999999999
Q ss_pred HhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC-CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 514 IIKAPRILLLDEATSALDSESERVVQEALDKAVV-GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 514 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
|++||++++||||||+||..+.+.+++.+.++.. |+++|+.||.++.++. ||+|+++++|+++..|+.+++.+
T Consensus 148 lvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 148 LVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred HhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence 9999999999999999999999999999998864 9999999999999985 99999999999999999999865
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=381.09 Aligned_cols=228 Identities=23% Similarity=0.350 Sum_probs=184.8
Q ss_pred EEEEEEEEEcCCCCC-CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccC----CCccEEEECCeecCCCCHHHH
Q 041277 361 VEFKCVQFAYPSRPE-SIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYA----PLGGEIILDGVSIDKLQLKWL 435 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~-~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~----~~~G~i~~~g~~~~~~~~~~~ 435 (1133)
++++|++++|+.+.. ..+|+||||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++.+++.+.+
T Consensus 4 L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~ 83 (326)
T PRK11022 4 LNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKER 83 (326)
T ss_pred EEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 789999999975321 358999999999999999999999999999999999997 489999999999988877665
Q ss_pred hh----hceEEecCCC--Ccc-ccHHHHHhc----CCC---CCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCC
Q 041277 436 RS----QMGLVSQEPA--LFA-TSIKENILF----GKE---DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMS 501 (1133)
Q Consensus 436 r~----~i~~v~Q~~~--l~~-~ti~eni~~----~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LS 501 (1133)
++ .|+||||+|. +.+ .|+.+++.. ... ....+++.++++..++.+.. ......+.+||
T Consensus 84 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~--------~~l~~~p~~LS 155 (326)
T PRK11022 84 RNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPA--------SRLDVYPHQLS 155 (326)
T ss_pred HHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH--------HHHhCCchhCC
Confidence 43 6999999995 443 366655532 111 11123455556665553211 12344567999
Q ss_pred hHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEee
Q 041277 502 GGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMET 578 (1133)
Q Consensus 502 gGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~ 578 (1133)
||||||++|||||+.+|++||+||||++||+.++..+.+.|+++. .|.|+|+|||+++.+.. ||+|++|++|+|+|.
T Consensus 156 gGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~ 235 (326)
T PRK11022 156 GGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVET 235 (326)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999999875 38999999999999865 999999999999999
Q ss_pred cCcchhccccchhhHHHH
Q 041277 579 GSHDELIQAESGLYTSLV 596 (1133)
Q Consensus 579 g~~~~l~~~~~~~~~~~~ 596 (1133)
|+++++.++....|.+..
T Consensus 236 g~~~~~~~~p~hpyt~~l 253 (326)
T PRK11022 236 GKAHDIFRAPRHPYTQAL 253 (326)
T ss_pred CCHHHHhhCCCChHHHHH
Confidence 999999876666676544
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=371.64 Aligned_cols=219 Identities=27% Similarity=0.463 Sum_probs=183.0
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCC-----CccEEEECCeecCCCC--
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP-----LGGEIILDGVSIDKLQ-- 431 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~-----~~G~i~~~g~~~~~~~-- 431 (1133)
..|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+
T Consensus 11 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 87 (258)
T PRK14268 11 PQIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87 (258)
T ss_pred eeEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccch
Confidence 35999999999974 3489999999999999999999999999999999999985 7999999999986532
Q ss_pred HHHHhhhceEEecCCCCccccHHHHHhcCCC--CCCHH----HHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHH
Q 041277 432 LKWLRSQMGLVSQEPALFATSIKENILFGKE--DASME----EVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQK 505 (1133)
Q Consensus 432 ~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~--~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 505 (1133)
...+|+.++|++|++.+|+.|++||+.++.. ....+ ++.++++.+++.+.+ .........+||||||
T Consensus 88 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG~~ 160 (258)
T PRK14268 88 VVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDET-------SDRLKSPALSLSGGQQ 160 (258)
T ss_pred HHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcch-------hhhhcCChhhCCHHHH
Confidence 3456788999999999999999999987531 12222 233444444432111 1223445678999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchh
Q 041277 506 QRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584 (1133)
Q Consensus 506 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 584 (1133)
||++|||||+.+|+++||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 161 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 240 (258)
T PRK14268 161 QRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQI 240 (258)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999865 999999999999999999998
Q ss_pred ccc
Q 041277 585 IQA 587 (1133)
Q Consensus 585 ~~~ 587 (1133)
...
T Consensus 241 ~~~ 243 (258)
T PRK14268 241 FHN 243 (258)
T ss_pred hcC
Confidence 653
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=367.30 Aligned_cols=215 Identities=28% Similarity=0.493 Sum_probs=180.4
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+... +++++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~ 77 (236)
T TIGR03864 2 LEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLG 77 (236)
T ss_pred EEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEE
Confidence 689999999974 35999999999999999999999999999999999999999999999999987766543 45899
Q ss_pred EEecCCCCc-cccHHHHHhcCCC--CCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhC
Q 041277 441 LVSQEPALF-ATSIKENILFGKE--DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKA 517 (1133)
Q Consensus 441 ~v~Q~~~l~-~~ti~eni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 517 (1133)
|++|++.++ ..|++||+.++.. ....++..+ .+.++++.+ |++........+||||||||++||||++++
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~laral~~~ 150 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARE-----RIAALLARL--GLAERADDKVRELNGGHRRRVEIARALLHR 150 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 999999885 5699999987532 112221111 122334433 344445566679999999999999999999
Q ss_pred CCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhcc
Q 041277 518 PRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 518 ~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+..||+|++|++|++++.|+++++.+
T Consensus 151 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (236)
T TIGR03864 151 PALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRG 221 (236)
T ss_pred CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHH
Confidence 99999999999999999999999999875 4899999999999987899999999999999999988865
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=363.94 Aligned_cols=205 Identities=29% Similarity=0.504 Sum_probs=171.4
Q ss_pred EEEEEEEEEcCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHH---Hh
Q 041277 361 VEFKCVQFAYPSRP-ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKW---LR 436 (1133)
Q Consensus 361 i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~---~r 436 (1133)
++++||+++|++.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 68999999996421 135899999999999999999999999999999999999999999999999998776543 33
Q ss_pred -hhceEEecCCCCcc-ccHHHHHhcCCC--CCCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHH
Q 041277 437 -SQMGLVSQEPALFA-TSIKENILFGKE--DASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRI 508 (1133)
Q Consensus 437 -~~i~~v~Q~~~l~~-~ti~eni~~~~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 508 (1133)
++++|++|++.+|+ .|++||+.++.. .... +++.++++..++.+ .......+||||||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEH-----------RINHRPSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-----------hhhCChhhCCHHHHHHH
Confidence 67999999999886 599999987421 1111 22334444444433 33344568999999999
Q ss_pred HHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhcCCEEEEEeCCeEE
Q 041277 509 AIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRNADVIAVVQDGQVM 576 (1133)
Q Consensus 509 ~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~G~i~ 576 (1133)
+||||++.+|++|||||||++||+++++.+.+.|+++. .++|+|++||+++.+..||++++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999999999998874 379999999999998889999999999985
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-41 Score=373.60 Aligned_cols=219 Identities=32% Similarity=0.508 Sum_probs=185.8
Q ss_pred cccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCC-----CccEEEECCeecCC--C
Q 041277 358 LGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP-----LGGEIILDGVSIDK--L 430 (1133)
Q Consensus 358 ~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~-----~~G~i~~~g~~~~~--~ 430 (1133)
.+.++++|++++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. .
T Consensus 23 ~~~l~~~nl~~~~~~~---~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 23 QTALEVRNLNLFYGDK---QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred CcEEEEEEEEEEECCe---eEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 3469999999999743 489999999999999999999999999999999999884 89999999999864 3
Q ss_pred CHHHHhhhceEEecCCCCccccHHHHHhcCCC--CC-C----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChH
Q 041277 431 QLKWLRSQMGLVSQEPALFATSIKENILFGKE--DA-S----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGG 503 (1133)
Q Consensus 431 ~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~--~~-~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG 503 (1133)
+...+|+.++|++|++.+|+.|++||+.++.. .. . .+++.++++..++.+.+. +..+..+.+||||
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 172 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK-------DRLHENAFGLSGG 172 (272)
T ss_pred CHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHH-------HHhhCCcccCCHH
Confidence 45567889999999999998899999987532 11 1 123444555555433222 2345667799999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcc
Q 041277 504 QKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHD 582 (1133)
Q Consensus 504 qkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 582 (1133)
||||++||||++++|+++||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 173 q~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 252 (272)
T PRK14236 173 QQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTD 252 (272)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHH
Confidence 999999999999999999999999999999999999999988778999999999999865 9999999999999999999
Q ss_pred hhcc
Q 041277 583 ELIQ 586 (1133)
Q Consensus 583 ~l~~ 586 (1133)
++..
T Consensus 253 ~~~~ 256 (272)
T PRK14236 253 TLFT 256 (272)
T ss_pred HHhc
Confidence 8865
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=371.44 Aligned_cols=218 Identities=32% Similarity=0.480 Sum_probs=182.6
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhc---cCC--CccEEEECCeecCCC--CH
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRF---YAP--LGGEIILDGVSIDKL--QL 432 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~---~~~--~~G~i~~~g~~~~~~--~~ 432 (1133)
.++++|+++.|+. +.+|+|+||++++||+++|+||||||||||+++|+|+ ++| ++|+|.++|+++... +.
T Consensus 3 ~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 4889999999974 3489999999999999999999999999999999997 454 589999999998754 34
Q ss_pred HHHhhhceEEecCCCCccccHHHHHhcCCCC--C-C----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHH
Q 041277 433 KWLRSQMGLVSQEPALFATSIKENILFGKED--A-S----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQK 505 (1133)
Q Consensus 433 ~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~--~-~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 505 (1133)
..+++.++|+||++.+|+.|++||+.++... . . .+++.++++..++.+++ .+...+.+.+||||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~ 152 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEV-------KDKLKESAFALSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcch-------hhhhhCCcccCCHHHH
Confidence 5678889999999999988999999875321 1 1 12334444444433222 2234456679999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchh
Q 041277 506 QRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584 (1133)
Q Consensus 506 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 584 (1133)
||++||||++.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~ 232 (250)
T PRK14245 153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKI 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999865 999999999999999999998
Q ss_pred ccc
Q 041277 585 IQA 587 (1133)
Q Consensus 585 ~~~ 587 (1133)
.++
T Consensus 233 ~~~ 235 (250)
T PRK14245 233 FTN 235 (250)
T ss_pred hcC
Confidence 753
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-41 Score=373.61 Aligned_cols=218 Identities=28% Similarity=0.431 Sum_probs=181.9
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccC-----CCccEEEECCeecCCC--CH
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYA-----PLGGEIILDGVSIDKL--QL 432 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~-----~~~G~i~~~g~~~~~~--~~ 432 (1133)
-++++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++... +.
T Consensus 21 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 97 (268)
T PRK14248 21 ILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97 (268)
T ss_pred eEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence 5899999999974 349999999999999999999999999999999999865 7899999999998653 34
Q ss_pred HHHhhhceEEecCCCCccccHHHHHhcCCC--CC-C----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHH
Q 041277 433 KWLRSQMGLVSQEPALFATSIKENILFGKE--DA-S----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQK 505 (1133)
Q Consensus 433 ~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~--~~-~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 505 (1133)
..++++++|++|++.+|+.|++||+.++.. .. . .+.+.++++..++.+.+ .......+.+||||||
T Consensus 98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgGq~ 170 (268)
T PRK14248 98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEV-------KDRLHSSALSLSGGQQ 170 (268)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcch-------HHHHhcCcccCCHHHH
Confidence 467788999999999998999999987531 11 1 12233344444332111 1223455679999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchh
Q 041277 506 QRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584 (1133)
Q Consensus 506 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 584 (1133)
||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 171 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 250 (268)
T PRK14248 171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQI 250 (268)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988767899999999998765 999999999999999999988
Q ss_pred ccc
Q 041277 585 IQA 587 (1133)
Q Consensus 585 ~~~ 587 (1133)
...
T Consensus 251 ~~~ 253 (268)
T PRK14248 251 FTS 253 (268)
T ss_pred HhC
Confidence 653
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=369.13 Aligned_cols=221 Identities=20% Similarity=0.405 Sum_probs=182.7
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHH-hhhc
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWL-RSQM 439 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~-r~~i 439 (1133)
|+++|++++|++. ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.... ++.+
T Consensus 3 i~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 3 LYLEGLSVSFDGF---KALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred EEEEeeEEEcCCe---EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 7899999999743 48999999999999999999999999999999999999999999999999887765543 4579
Q ss_pred eEEecCCCCccc-cHHHHHhcCCCCCC-H-HH---HHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHH
Q 041277 440 GLVSQEPALFAT-SIKENILFGKEDAS-M-EE---VIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARA 513 (1133)
Q Consensus 440 ~~v~Q~~~l~~~-ti~eni~~~~~~~~-~-~~---~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa 513 (1133)
+|++|++.+|++ |++||+.++..... . .. .........+.+.++.+ |++........+||||||||++||||
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrv~lara 157 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI--GLADEADRLAGLLSHGQKQWLEIGML 157 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHH
Confidence 999999999986 99999987532100 0 00 00000111123334443 34444555667899999999999999
Q ss_pred HhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 514 IIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 514 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
++.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 158 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 158 LMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred HhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 99999999999999999999999999999988778999999999999876 99999999999999999988864
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-41 Score=367.75 Aligned_cols=212 Identities=27% Similarity=0.470 Sum_probs=178.0
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecC------CCCHHH
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSID------KLQLKW 434 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~------~~~~~~ 434 (1133)
++++|++++|+++ ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ......
T Consensus 3 l~~~~l~~~~~~~---~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 3 IQLNGINCFYGAH---QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEeeEEEECCe---eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence 7899999999743 4999999999999999999999999999999999999999999999999873 123456
Q ss_pred HhhhceEEecCCCCccc-cHHHHHhcCCC---CCCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHH
Q 041277 435 LRSQMGLVSQEPALFAT-SIKENILFGKE---DASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQ 506 (1133)
Q Consensus 435 ~r~~i~~v~Q~~~l~~~-ti~eni~~~~~---~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 506 (1133)
+|++++|+||++.+|.. |++||+.++.. .... +++.+.++..++.+ .......+|||||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LS~G~~q 148 (242)
T PRK11124 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKP-----------YADRFPLHLSGGQQQ 148 (242)
T ss_pred HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-----------hhhCChhhCCHHHHH
Confidence 77899999999999875 99999974211 1111 22333344444433 334445689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchh
Q 041277 507 RIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584 (1133)
Q Consensus 507 ri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 584 (1133)
|++||||++.+|+++||||||++||+++...+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 149 rv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 149 RVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 9999999999999999999999999999999999999875 48999999999999865 999999999999999998887
Q ss_pred cc
Q 041277 585 IQ 586 (1133)
Q Consensus 585 ~~ 586 (1133)
.+
T Consensus 229 ~~ 230 (242)
T PRK11124 229 TQ 230 (242)
T ss_pred cC
Confidence 54
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-41 Score=371.09 Aligned_cols=219 Identities=31% Similarity=0.437 Sum_probs=185.7
Q ss_pred cccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccC-----CCccEEEECCeecCC--C
Q 041277 358 LGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYA-----PLGGEIILDGVSIDK--L 430 (1133)
Q Consensus 358 ~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~-----~~~G~i~~~g~~~~~--~ 430 (1133)
...|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .
T Consensus 18 ~~~l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 94 (267)
T PRK14237 18 EIALSTKDLHVYYGK---KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEI 94 (267)
T ss_pred CeEEEEeeEEEEECC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccC
Confidence 346999999999964 359999999999999999999999999999999999997 589999999999864 3
Q ss_pred CHHHHhhhceEEecCCCCccccHHHHHhcCCCC--C-C----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChH
Q 041277 431 QLKWLRSQMGLVSQEPALFATSIKENILFGKED--A-S----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGG 503 (1133)
Q Consensus 431 ~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~--~-~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG 503 (1133)
+...+|+.|+|+||++.+|..|++||+.++... . . .+++.++++..++.+++ ++..+..+.+||||
T Consensus 95 ~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LS~G 167 (267)
T PRK14237 95 NVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQV-------KDDLHKSALTLSGG 167 (267)
T ss_pred ChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchh-------hhhhcCCcccCCHH
Confidence 355678889999999999989999999875321 1 1 12344445555543322 23345667799999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcc
Q 041277 504 QKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHD 582 (1133)
Q Consensus 504 qkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 582 (1133)
||||++||||++++|+++||||||++||+.+++.+.+.|+++.++.|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 168 ~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 247 (267)
T PRK14237 168 QQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTR 247 (267)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999988778999999999998865 9999999999999999999
Q ss_pred hhcc
Q 041277 583 ELIQ 586 (1133)
Q Consensus 583 ~l~~ 586 (1133)
++..
T Consensus 248 ~~~~ 251 (267)
T PRK14237 248 NIFT 251 (267)
T ss_pred HHhc
Confidence 9865
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-41 Score=375.29 Aligned_cols=217 Identities=29% Similarity=0.504 Sum_probs=180.4
Q ss_pred cEEEEEEEEEcCCCC--CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCC----CHH
Q 041277 360 EVEFKCVQFAYPSRP--ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKL----QLK 433 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~----~~~ 433 (1133)
.|+++|++++|++.. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999997421 13599999999999999999999999999999999999999999999999998653 245
Q ss_pred HHhhhceEEecCC--CCccccHHHHHhcCCC--CCCHH----HHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHH
Q 041277 434 WLRSQMGLVSQEP--ALFATSIKENILFGKE--DASME----EVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQK 505 (1133)
Q Consensus 434 ~~r~~i~~v~Q~~--~l~~~ti~eni~~~~~--~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 505 (1133)
..++.|+|++|+| .+|..|++||+.++.. ....+ .+.++++..++.. ........+||||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~~~~~~~~~LSgGq~ 151 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSE----------DLISKSPFELSGGQM 151 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh----------hHhhCCcccCCHHHH
Confidence 6677899999998 5777899999987532 12222 2333333333321 123445568999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcch
Q 041277 506 QRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDE 583 (1133)
Q Consensus 506 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 583 (1133)
||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. +|.|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 152 qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 231 (287)
T PRK13641 152 RRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKE 231 (287)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999875 58999999999999865 99999999999999999998
Q ss_pred hcc
Q 041277 584 LIQ 586 (1133)
Q Consensus 584 l~~ 586 (1133)
+..
T Consensus 232 ~~~ 234 (287)
T PRK13641 232 IFS 234 (287)
T ss_pred Hhc
Confidence 865
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-41 Score=368.79 Aligned_cols=212 Identities=28% Similarity=0.446 Sum_probs=182.9
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
|+++|++++|+++ .+|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 3 l~~~~l~~~~~~~---~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 3 LEARNLSVRLGGR---TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred EEEEeEEEEeCCe---eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence 7899999999743 4999999999999999999999999999999999999999999999999998877777788899
Q ss_pred EEecCCCC-ccccHHHHHhcCCCCC------CHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHH
Q 041277 441 LVSQEPAL-FATSIKENILFGKEDA------SMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARA 513 (1133)
Q Consensus 441 ~v~Q~~~l-~~~ti~eni~~~~~~~------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa 513 (1133)
|++|++.+ +..|++||+.++.... ..+++.++++..++.+... ....+||||||||++||||
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGe~qrv~la~a 148 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAG-----------RDYPQLSGGEQQRVQLARV 148 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhc-----------CCcccCCHHHHHHHHHHHH
Confidence 99999987 5679999998753211 1223445555555544333 3346899999999999999
Q ss_pred Hh------hCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchh
Q 041277 514 II------KAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584 (1133)
Q Consensus 514 l~------~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 584 (1133)
|+ .+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 149 l~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (258)
T PRK13548 149 LAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEV 228 (258)
T ss_pred HhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHH
Confidence 99 5999999999999999999999999999875 48999999999999875 999999999999999999888
Q ss_pred cc
Q 041277 585 IQ 586 (1133)
Q Consensus 585 ~~ 586 (1133)
..
T Consensus 229 ~~ 230 (258)
T PRK13548 229 LT 230 (258)
T ss_pred hC
Confidence 65
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-41 Score=370.24 Aligned_cols=216 Identities=31% Similarity=0.504 Sum_probs=179.8
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCC--------H
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQ--------L 432 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~--------~ 432 (1133)
++++|++++|+++ ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+ .
T Consensus 4 l~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 4 IEVKNLVKKFHGQ---TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred EEEeceEEEECCe---eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence 7899999999743 4899999999999999999999999999999999999999999999999986532 2
Q ss_pred HHHhhhceEEecCCCCcc-ccHHHHHhcCC---CCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHH
Q 041277 433 KWLRSQMGLVSQEPALFA-TSIKENILFGK---EDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRI 508 (1133)
Q Consensus 433 ~~~r~~i~~v~Q~~~l~~-~ti~eni~~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 508 (1133)
..++++++||||++.+|+ .|++||+.++. .....++..+. +.+.++.+ |++......+.+||||||||+
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LS~Gq~qrv 153 (250)
T PRK11264 81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATAR-----ARELLAKV--GLAGKETSYPRRLSGGQQQRV 153 (250)
T ss_pred HHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHc--CCcchhhCChhhCChHHHHHH
Confidence 456788999999999886 59999998642 11122211111 12233333 333334455679999999999
Q ss_pred HHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 509 AIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 509 ~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
+||||++.+|++|||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 154 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 233 (250)
T PRK11264 154 AIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFA 233 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999998875 48999999999999876 99999999999999999999865
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-41 Score=370.34 Aligned_cols=218 Identities=28% Similarity=0.457 Sum_probs=181.9
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhcc--CC---CccEEEECCeecCCC--CH
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFY--AP---LGGEIILDGVSIDKL--QL 432 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~--~~---~~G~i~~~g~~~~~~--~~ 432 (1133)
.++++|++++|+++ ++|+|+||++++||+++|+||||||||||+++|+|++ .| ++|+|.++|+++... +.
T Consensus 5 ~l~~~~l~~~~~~~---~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYNKK---KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEECCe---eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 48999999999743 4899999999999999999999999999999999995 36 599999999998643 34
Q ss_pred HHHhhhceEEecCCCCccccHHHHHhcCCC--C-CC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHH
Q 041277 433 KWLRSQMGLVSQEPALFATSIKENILFGKE--D-AS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQK 505 (1133)
Q Consensus 433 ~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~--~-~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 505 (1133)
..+|+.++||||++.+|+.|++||+.++.. . .. .+++.++++..++.+.+ .+.......+||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~ 154 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEV-------KDRLHDSALGLSGGQQ 154 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhH-------HHHHhcCcccCCHHHH
Confidence 567788999999999999999999987521 1 11 12333344444443222 1234456678999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchh
Q 041277 506 QRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584 (1133)
Q Consensus 506 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 584 (1133)
||++||||++.+|++|||||||++||+.+++.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988767999999999998765 999999999999999999998
Q ss_pred ccc
Q 041277 585 IQA 587 (1133)
Q Consensus 585 ~~~ 587 (1133)
.+.
T Consensus 235 ~~~ 237 (252)
T PRK14239 235 FMN 237 (252)
T ss_pred HhC
Confidence 753
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-41 Score=364.81 Aligned_cols=218 Identities=26% Similarity=0.408 Sum_probs=179.9
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHH-Hhhh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKW-LRSQ 438 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~-~r~~ 438 (1133)
-|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 4889999999974 34999999999999999999999999999999999999999999999999998877544 5778
Q ss_pred ceEEecCCCCccc-cHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhC
Q 041277 439 MGLVSQEPALFAT-SIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKA 517 (1133)
Q Consensus 439 i~~v~Q~~~l~~~-ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 517 (1133)
++|++|++.+|.. |++||+.++......++..+.+ .+.++.++. ++........+||||||||++||||++.+
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~l~~~~~-l~~~~~~~~~~LS~G~~qrl~la~al~~~ 155 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERI-----KWVYELFPR-LHERRIQRAGTMSGGEQQMLAIGRALMSQ 155 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHH-----HHHHHHHHH-HHHHHhCchhhCCHHHHHHHHHHHHHHhC
Confidence 9999999999985 9999998864222222221111 111222211 11112234568999999999999999999
Q ss_pred CCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 518 PRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 518 ~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 156 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 156 PRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 99999999999999999999999998875 58999999999998765 99999999999999999999864
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-41 Score=369.67 Aligned_cols=217 Identities=31% Similarity=0.469 Sum_probs=181.6
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccC-----CCccEEEECCeecCC--CCH
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYA-----PLGGEIILDGVSIDK--LQL 432 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~-----~~~G~i~~~g~~~~~--~~~ 432 (1133)
.|+++|++|+|+.. ++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .+.
T Consensus 4 ~l~~~~l~~~~~~~---~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYGNY---EALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEECCe---eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 48999999999743 49999999999999999999999999999999999997 479999999999864 334
Q ss_pred HHHhhhceEEecCCCCccccHHHHHhcCCCC--C-C----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHH
Q 041277 433 KWLRSQMGLVSQEPALFATSIKENILFGKED--A-S----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQK 505 (1133)
Q Consensus 433 ~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~--~-~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 505 (1133)
..+++.++|++|++.+|+.|++||+.++... . . .+++.++++..++++.. .......+.+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET-------KDNLDRNAQAFSGGQQ 153 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch-------HHHhccChhhCCHHHH
Confidence 5677889999999999999999999875321 1 1 12333444444432110 1123445679999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchh
Q 041277 506 QRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584 (1133)
Q Consensus 506 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 584 (1133)
||++||||++++|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14251 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999876 999999999999999999998
Q ss_pred cc
Q 041277 585 IQ 586 (1133)
Q Consensus 585 ~~ 586 (1133)
..
T Consensus 234 ~~ 235 (251)
T PRK14251 234 FI 235 (251)
T ss_pred Hh
Confidence 65
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-41 Score=373.41 Aligned_cols=212 Identities=31% Similarity=0.467 Sum_probs=179.3
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecC--CCCHHHHhhh
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSID--KLQLKWLRSQ 438 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~--~~~~~~~r~~ 438 (1133)
|+++||+++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++. +.+...+|++
T Consensus 2 l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 689999999974 34999999999999999999999999999999999999999999999999985 2334567788
Q ss_pred ceEEecCCC--CccccHHHHHhcCCC--CCCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHH
Q 041277 439 MGLVSQEPA--LFATSIKENILFGKE--DASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAI 510 (1133)
Q Consensus 439 i~~v~Q~~~--l~~~ti~eni~~~~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~i 510 (1133)
|+||+|++. ++..|+.+|+.++.. .... +++.++++..++.++.. ....+||||||||++|
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrl~l 147 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRH-----------QPIQCLSHGQKKRVAI 147 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhc-----------CCchhCCHHHHHHHHH
Confidence 999999985 566789999987421 1122 23344555555544332 2346899999999999
Q ss_pred HHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 511 ARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 511 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
||||+.+|++|||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 148 araL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 225 (271)
T PRK13638 148 AGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFA 225 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999998874 58999999999999865 99999999999999999988865
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-41 Score=364.44 Aligned_cols=212 Identities=29% Similarity=0.471 Sum_probs=178.5
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHH-Hhhhc
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKW-LRSQM 439 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~-~r~~i 439 (1133)
|+++||+++|+++ ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++++
T Consensus 1 l~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQS---HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCCe---EEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 4789999999743 5899999999999999999999999999999999999999999999999998776554 46689
Q ss_pred eEEecCCCCccc-cHHHHHhcCCCCC--CHHH-HHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHh
Q 041277 440 GLVSQEPALFAT-SIKENILFGKEDA--SMEE-VIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAII 515 (1133)
Q Consensus 440 ~~v~Q~~~l~~~-ti~eni~~~~~~~--~~~~-~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~ 515 (1133)
+|++|++.+|.. |++||+.++.... ..++ ..++++..+ ++.........+||||||||++||||++
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~la~al~ 147 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFP----------VLKEMLGRRGGDLSGGQQQQLAIARALV 147 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHH----------hHHHHhhCChhhCCHHHHHHHHHHHHHh
Confidence 999999999976 9999998763221 1111 122222221 1222234455689999999999999999
Q ss_pred hCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhc
Q 041277 516 KAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELI 585 (1133)
Q Consensus 516 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 585 (1133)
++|+++||||||++||+.+++.+.+.|.+..+ ++|+|++||+++.+.. ||+|+++++|++++.|+++++.
T Consensus 148 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~ 220 (230)
T TIGR03410 148 TRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220 (230)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcC
Confidence 99999999999999999999999999998753 7999999999999886 9999999999999999999874
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-41 Score=368.60 Aligned_cols=221 Identities=28% Similarity=0.471 Sum_probs=184.4
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccC--C---CccEEEECCeecCCC--C
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYA--P---LGGEIILDGVSIDKL--Q 431 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~--~---~~G~i~~~g~~~~~~--~ 431 (1133)
+.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|.++... +
T Consensus 3 ~~l~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 3 NKVKLEQLNVHFGK---NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred cEEEEEEEEEEeCC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 56899999999974 349999999999999999999999999999999999986 4 689999999998643 3
Q ss_pred HHHHhhhceEEecCCCCcc-ccHHHHHhcCCC--C-CCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChH
Q 041277 432 LKWLRSQMGLVSQEPALFA-TSIKENILFGKE--D-ASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGG 503 (1133)
Q Consensus 432 ~~~~r~~i~~v~Q~~~l~~-~ti~eni~~~~~--~-~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG 503 (1133)
...+|++++|+||++.+|. .|++||+.++.. . .+. +++.++++..++.+.+. ......+.+||||
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 152 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVK-------DRLKSNAMELSGG 152 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcCcCCHH
Confidence 4567888999999999997 599999987421 1 111 23444555555433222 1223456789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcc
Q 041277 504 QKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHD 582 (1133)
Q Consensus 504 qkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 582 (1133)
||||++||||++.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 153 ~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14256 153 QQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETK 232 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999988778999999999999865 9999999999999999999
Q ss_pred hhccccc
Q 041277 583 ELIQAES 589 (1133)
Q Consensus 583 ~l~~~~~ 589 (1133)
++.....
T Consensus 233 ~~~~~~~ 239 (252)
T PRK14256 233 KIFTTPE 239 (252)
T ss_pred HHHhCCC
Confidence 9875433
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=371.48 Aligned_cols=217 Identities=29% Similarity=0.493 Sum_probs=181.9
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccC-----CCccEEEECCeecCCCC--HH
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYA-----PLGGEIILDGVSIDKLQ--LK 433 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~-----~~~G~i~~~g~~~~~~~--~~ 433 (1133)
-+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...+ ..
T Consensus 6 ~~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYGS---KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEECC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 468999999964 358999999999999999999999999999999999986 47999999999886543 33
Q ss_pred HHhhhceEEecCCCCccccHHHHHhcCCC--CC--C----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHH
Q 041277 434 WLRSQMGLVSQEPALFATSIKENILFGKE--DA--S----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQK 505 (1133)
Q Consensus 434 ~~r~~i~~v~Q~~~l~~~ti~eni~~~~~--~~--~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 505 (1133)
.+|+.++|+||++.+|+.|++||+.++.. .. . .+++.++++..++.+.+ .+.++..+.+||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEEL-------GDRLKDSAFELSGGQQ 155 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchh-------hhHhhcChhhCCHHHH
Confidence 56788999999999998999999987521 11 1 12334445554443221 1233455678999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchh
Q 041277 506 QRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584 (1133)
Q Consensus 506 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 584 (1133)
||++||||++++|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999875 999999999999999999998
Q ss_pred ccc
Q 041277 585 IQA 587 (1133)
Q Consensus 585 ~~~ 587 (1133)
.+.
T Consensus 236 ~~~ 238 (251)
T PRK14244 236 FKN 238 (251)
T ss_pred hcC
Confidence 764
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-41 Score=379.05 Aligned_cols=212 Identities=27% Similarity=0.469 Sum_probs=178.2
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ....|+++
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i 79 (303)
T TIGR01288 4 AIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAI 79 (303)
T ss_pred EEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcE
Confidence 4899999999974 3489999999999999999999999999999999999999999999999998654 34568889
Q ss_pred eEEecCCCCcc-ccHHHHHhcCCC--CCCHHH----HHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHH
Q 041277 440 GLVSQEPALFA-TSIKENILFGKE--DASMEE----VIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIAR 512 (1133)
Q Consensus 440 ~~v~Q~~~l~~-~ti~eni~~~~~--~~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iAR 512 (1133)
||+||++.++. .|++||+.+... ..+.++ +.++++..++.+ . ......+||||||||++|||
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-------~----~~~~~~~LSgG~~qrv~la~ 148 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLES-------K----ADVRVALLSGGMKRRLTLAR 148 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChh-------H----hcCchhhCCHHHHHHHHHHH
Confidence 99999999885 599999975211 122222 222333333322 2 23334589999999999999
Q ss_pred HHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 513 AIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 513 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
||+.+|+++||||||++||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 149 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 149 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999999874 58999999999999875 99999999999999999998864
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=361.61 Aligned_cols=201 Identities=32% Similarity=0.525 Sum_probs=172.5
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHH---HHhh
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLK---WLRS 437 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~---~~r~ 437 (1133)
++++|++++|+. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+++.. .+++
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 689999999952 23599999999999999999999999999999999999999999999999999876543 4678
Q ss_pred hceEEecCCCCcc-ccHHHHHhcCCC--CC----CHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHH
Q 041277 438 QMGLVSQEPALFA-TSIKENILFGKE--DA----SMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAI 510 (1133)
Q Consensus 438 ~i~~v~Q~~~l~~-~ti~eni~~~~~--~~----~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~i 510 (1133)
.++|++|++.+|. .|++||+.++.. .. ..+++.++++..++.+...+.| .+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~l 148 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP-----------EQLSGGEQQRVAI 148 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHH
Confidence 8999999999986 599999987521 11 1234556666666655544433 4899999999999
Q ss_pred HHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCe
Q 041277 511 ARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQ 574 (1133)
Q Consensus 511 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~ 574 (1133)
||||+.+|+++||||||++||+.++..+.+.|+++. +++|+|++||+++.+.. ||++++|++|+
T Consensus 149 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 149 ARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999999999874 58999999999999876 99999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-41 Score=367.89 Aligned_cols=217 Identities=28% Similarity=0.494 Sum_probs=183.6
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCC-----ccEEEECCeecCCC--CH
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPL-----GGEIILDGVSIDKL--QL 432 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~-----~G~i~~~g~~~~~~--~~ 432 (1133)
.|+++|++|+|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++... +.
T Consensus 4 ~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 5899999999974 34999999999999999999999999999999999999997 69999999998643 34
Q ss_pred HHHhhhceEEecCCCCccccHHHHHhcCCCC--CC-H----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHH
Q 041277 433 KWLRSQMGLVSQEPALFATSIKENILFGKED--AS-M----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQK 505 (1133)
Q Consensus 433 ~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~--~~-~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 505 (1133)
..+|+.++||+|++.+|+.|++||+.++... .. . +.+.++++..++.+.+ .+.....+.+||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEV-------KDNLHKSGLALSGGQQ 153 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhh-------hhHhhCCcccCCHHHH
Confidence 5678899999999999988999999876321 11 1 2233333444433222 2334566789999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchh
Q 041277 506 QRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584 (1133)
Q Consensus 506 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 584 (1133)
||++||||++.+|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999887678999999999999876 899999999999999999988
Q ss_pred cc
Q 041277 585 IQ 586 (1133)
Q Consensus 585 ~~ 586 (1133)
..
T Consensus 234 ~~ 235 (251)
T PRK14249 234 FS 235 (251)
T ss_pred Hh
Confidence 65
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-41 Score=370.85 Aligned_cols=215 Identities=34% Similarity=0.506 Sum_probs=184.0
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.++++|++++|++. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+++++
T Consensus 7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 48999999999753 23589999999999999999999999999999999999999999999999999888877888899
Q ss_pred eEEecCCC-Cc-cccHHHHHhcCCCC--CCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHH
Q 041277 440 GLVSQEPA-LF-ATSIKENILFGKED--ASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIA 511 (1133)
Q Consensus 440 ~~v~Q~~~-l~-~~ti~eni~~~~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iA 511 (1133)
+|++|+|. +| ..|+++|+.++... ... +++.++++..++.++. ...+.+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~la 154 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERA-----------DYEPNALSGGQKQRVAIA 154 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------hCCcccCCHHHHHHHHHH
Confidence 99999985 44 55899999886321 122 2334445555444333 234568999999999999
Q ss_pred HHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhcc
Q 041277 512 RAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 512 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
||++.+|+++||||||++||+.+++.+.+.|+++. .++|+|++||+++.+..||+|++|++|++++.|+++++..
T Consensus 155 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 231 (269)
T PRK13648 155 GVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFD 231 (269)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhc
Confidence 99999999999999999999999999999998874 3789999999999887899999999999999999998865
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-41 Score=371.33 Aligned_cols=214 Identities=26% Similarity=0.410 Sum_probs=185.5
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhh
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 438 (1133)
..|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.
T Consensus 6 ~~l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (265)
T PRK10253 6 ARLRGEQLTLGYGK---YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARR 82 (265)
T ss_pred cEEEEEEEEEEECC---EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence 36899999999974 349999999999999999999999999999999999999999999999999988887778889
Q ss_pred ceEEecCCCCcc-ccHHHHHhcCC-CC------C---CHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHH
Q 041277 439 MGLVSQEPALFA-TSIKENILFGK-ED------A---SMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQR 507 (1133)
Q Consensus 439 i~~v~Q~~~l~~-~ti~eni~~~~-~~------~---~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqr 507 (1133)
++|+||++.+|. .|++||+.++. +. . ..+++.++++..++.++.. ..+.+||||||||
T Consensus 83 i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~Gq~qr 151 (265)
T PRK10253 83 IGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLAD-----------QSVDTLSGGQRQR 151 (265)
T ss_pred eEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhc-----------CCcccCChHHHHH
Confidence 999999998875 59999998752 11 0 1224555666666654433 3446899999999
Q ss_pred HHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchh
Q 041277 508 IAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584 (1133)
Q Consensus 508 i~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 584 (1133)
++||||++++|+++||||||++||+.+.+.+.+.|.++. .++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 152 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (265)
T PRK10253 152 AWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEI 231 (265)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999998874 37899999999998865 999999999999999999887
Q ss_pred cc
Q 041277 585 IQ 586 (1133)
Q Consensus 585 ~~ 586 (1133)
..
T Consensus 232 ~~ 233 (265)
T PRK10253 232 VT 233 (265)
T ss_pred hh
Confidence 65
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=360.79 Aligned_cols=201 Identities=40% Similarity=0.639 Sum_probs=170.4
Q ss_pred EEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceE
Q 041277 362 EFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGL 441 (1133)
Q Consensus 362 ~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 441 (1133)
+++|++++|++. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++++|+|
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 368999999752 1358999999999999999999999999999999999999999999999999987777778889999
Q ss_pred EecCCC--CccccHHHHHhcCCCC--CCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHH
Q 041277 442 VSQEPA--LFATSIKENILFGKED--ASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARA 513 (1133)
Q Consensus 442 v~Q~~~--l~~~ti~eni~~~~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa 513 (1133)
++|++. ++..|++||+.++... ... +++.+.++..++.++++ ....+||||||||++||||
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~lara 148 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRD-----------RSPFTLSGGQKQRVAIAGV 148 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhc-----------CCcccCCHHHHHHHHHHHH
Confidence 999984 5678999999875321 121 23344455555444333 3446899999999999999
Q ss_pred HhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCe
Q 041277 514 IIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQ 574 (1133)
Q Consensus 514 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~ 574 (1133)
|+++|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|+
T Consensus 149 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 149 LAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999999998875 48999999999999987 99999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-41 Score=369.61 Aligned_cols=215 Identities=28% Similarity=0.482 Sum_probs=181.1
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCC--------
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKL-------- 430 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~-------- 430 (1133)
+.++++|++++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 4 NKLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred ccEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 46999999999974 3489999999999999999999999999999999999999999999999988642
Q ss_pred -----CHHHHhhhceEEecCCCCccc-cHHHHHhcCCC---CCC----HHHHHHHHHHhchHHHHHhCCCcccccccCCC
Q 041277 431 -----QLKWLRSQMGLVSQEPALFAT-SIKENILFGKE---DAS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERG 497 (1133)
Q Consensus 431 -----~~~~~r~~i~~v~Q~~~l~~~-ti~eni~~~~~---~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g 497 (1133)
....++++++|+||++.++.. |++||+.++.. ... .+++.++++..++.+.. .....
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~~ 150 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERA----------QGKYP 150 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhh----------hhCCc
Confidence 134567889999999999975 99999986421 111 12333444444443322 13445
Q ss_pred CCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeE
Q 041277 498 VQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQV 575 (1133)
Q Consensus 498 ~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i 575 (1133)
.+||||||||++|||||+++|+++||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i 230 (257)
T PRK10619 151 VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 230 (257)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 6899999999999999999999999999999999999999999999875 48999999999999986 999999999999
Q ss_pred EeecCcchhcc
Q 041277 576 METGSHDELIQ 586 (1133)
Q Consensus 576 ~~~g~~~~l~~ 586 (1133)
++.|+++++..
T Consensus 231 ~~~~~~~~~~~ 241 (257)
T PRK10619 231 EEEGAPEQLFG 241 (257)
T ss_pred EEeCCHHHhhh
Confidence 99999998865
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-41 Score=375.20 Aligned_cols=218 Identities=30% Similarity=0.491 Sum_probs=180.0
Q ss_pred ccEEEEEEEEEcCCCC--CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCC----C-C
Q 041277 359 GEVEFKCVQFAYPSRP--ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDK----L-Q 431 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~----~-~ 431 (1133)
+.|+++|++++|+++. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. . +
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 5699999999997532 1358999999999999999999999999999999999999999999999999852 1 3
Q ss_pred HHHHhhhceEEecCC--CCccccHHHHHhcCCC--CCCHHHH----HHHHHHhchHHHHHhCCCcccccccCCCCCCChH
Q 041277 432 LKWLRSQMGLVSQEP--ALFATSIKENILFGKE--DASMEEV----IEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGG 503 (1133)
Q Consensus 432 ~~~~r~~i~~v~Q~~--~l~~~ti~eni~~~~~--~~~~~~~----~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG 503 (1133)
...+|++|+|++|+| .+|..|++||+.++.. ....++. .+.++..+ +|.+ .......+||||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~-------L~~~---~~~~~~~~LS~G 154 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQ-------LPED---YVKRSPFELSGG 154 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-------CChh---HhcCChhhCCHH
Confidence 456788899999998 4677899999987532 1222222 22222222 2211 234456789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecC
Q 041277 504 QKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGS 580 (1133)
Q Consensus 504 qkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 580 (1133)
||||++|||||+.+|++|||||||++||+.+++.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus 155 q~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~ 234 (289)
T PRK13645 155 QKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGS 234 (289)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999998874 38999999999998765 99999999999999999
Q ss_pred cchhcc
Q 041277 581 HDELIQ 586 (1133)
Q Consensus 581 ~~~l~~ 586 (1133)
++++.+
T Consensus 235 ~~~~~~ 240 (289)
T PRK13645 235 PFEIFS 240 (289)
T ss_pred HHHHhc
Confidence 988765
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-41 Score=348.66 Aligned_cols=178 Identities=38% Similarity=0.653 Sum_probs=164.5
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
|+++|++++|+++ +.++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...++++++
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLIS 78 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEE
Confidence 4789999999753 23589999999999999999999999999999999999999999999999988765 556788899
Q ss_pred EEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCE
Q 041277 441 LVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRI 520 (1133)
Q Consensus 441 ~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~i 520 (1133)
|++|++.+|+.|++||+ +.+||||||||++||||++++|++
T Consensus 79 ~~~q~~~~~~~tv~~~i---------------------------------------~~~LS~G~~qrv~laral~~~p~~ 119 (178)
T cd03247 79 VLNQRPYLFDTTLRNNL---------------------------------------GRRFSGGERQRLALARILLQDAPI 119 (178)
T ss_pred EEccCCeeecccHHHhh---------------------------------------cccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999998 357999999999999999999999
Q ss_pred EEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeec
Q 041277 521 LLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETG 579 (1133)
Q Consensus 521 lllDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g 579 (1133)
+||||||++||+.+++.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|
T Consensus 120 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 120 VLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999887789999999999999889999999999998764
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=381.01 Aligned_cols=229 Identities=26% Similarity=0.408 Sum_probs=187.2
Q ss_pred cEEEEEEEEEcCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCC---ccEEEECCeecCCCCHHHH
Q 041277 360 EVEFKCVQFAYPSRP-ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPL---GGEIILDGVSIDKLQLKWL 435 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~---~G~i~~~g~~~~~~~~~~~ 435 (1133)
-++++|++++|+.+. ...+++|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++..++.+++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 489999999996421 245899999999999999999999999999999999999996 9999999999998887665
Q ss_pred h----hhceEEecCC--CCcc-ccHHHHHhcCC---CCCCHHH----HHHHHHHhchHHHHHhCCCcccccccCCCCCCC
Q 041277 436 R----SQMGLVSQEP--ALFA-TSIKENILFGK---EDASMEE----VIEAAKASNAHNFIRQLPQQYDTQVGERGVQMS 501 (1133)
Q Consensus 436 r----~~i~~v~Q~~--~l~~-~ti~eni~~~~---~~~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LS 501 (1133)
+ ++|+||+|+| .+++ .|+.+|+.... ...+.++ +.+.++.++ ++++. ..++..+.+||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vg-------L~~~~-~~~~~~p~~LS 163 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVK-------MPEAR-KRMKMYPHEFS 163 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-------CCChH-HHhcCCcccCC
Confidence 3 4799999998 4554 47888775321 1122222 223333332 33322 23566778999
Q ss_pred hHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEEee
Q 041277 502 GGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMET 578 (1133)
Q Consensus 502 gGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~ 578 (1133)
||||||++|||||+.+|++||+|||||+||+.++..+.+.|+++.+ +.|+|+|||+++.+.. ||+|+||++|+|+|.
T Consensus 164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~ 243 (330)
T PRK09473 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY 243 (330)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999998753 8999999999999875 999999999999999
Q ss_pred cCcchhccccchhhHHHH
Q 041277 579 GSHDELIQAESGLYTSLV 596 (1133)
Q Consensus 579 g~~~~l~~~~~~~~~~~~ 596 (1133)
|+++++.+.....|.+..
T Consensus 244 g~~~~i~~~p~~pyt~~l 261 (330)
T PRK09473 244 GNARDVFYQPSHPYSIGL 261 (330)
T ss_pred CCHHHHHhCCCCHHHHHH
Confidence 999999876666777644
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=362.28 Aligned_cols=198 Identities=26% Similarity=0.475 Sum_probs=167.5
Q ss_pred EEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceE
Q 041277 362 EFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGL 441 (1133)
Q Consensus 362 ~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 441 (1133)
+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++. .++++++|
T Consensus 1 ~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~ 72 (213)
T cd03235 1 EVEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGY 72 (213)
T ss_pred CcccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEE
Confidence 36899999974 34899999999999999999999999999999999999999999999998764 46778999
Q ss_pred EecCCCC---ccccHHHHHhcCCCCC----------CHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHH
Q 041277 442 VSQEPAL---FATSIKENILFGKEDA----------SMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRI 508 (1133)
Q Consensus 442 v~Q~~~l---~~~ti~eni~~~~~~~----------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 508 (1133)
++|++.+ ++.|++||+.++.... ..+++.++++..++.++.++ ...+||||||||+
T Consensus 73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv 141 (213)
T cd03235 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADR-----------QIGELSGGQQQRV 141 (213)
T ss_pred eccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhC-----------CcccCCHHHHHHH
Confidence 9999876 5579999998754311 12345556666666554443 3458999999999
Q ss_pred HHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeec
Q 041277 509 AIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETG 579 (1133)
Q Consensus 509 ~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 579 (1133)
+|||||+.+|++|||||||++||+.+++.+.+.|++.. +++|+|++||+++.+.. ||+|++|++| +++.|
T Consensus 142 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 142 LLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999999999999999999999999875 68999999999999876 9999999886 55544
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-41 Score=368.72 Aligned_cols=218 Identities=28% Similarity=0.456 Sum_probs=184.9
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccC-----CCccEEEECCeecCC--CCH
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYA-----PLGGEIILDGVSIDK--LQL 432 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~-----~~~G~i~~~g~~~~~--~~~ 432 (1133)
.|+++||+++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 10 ~l~i~~v~~~~~~~---~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 10 VLRTENLNVYYGSF---LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEEeeeEEEECCE---EEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 48999999999743 48999999999999999999999999999999999986 479999999998853 345
Q ss_pred HHHhhhceEEecCCCCccccHHHHHhcCCCCC-----CHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHH
Q 041277 433 KWLRSQMGLVSQEPALFATSIKENILFGKEDA-----SMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQR 507 (1133)
Q Consensus 433 ~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~-----~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqr 507 (1133)
..++++++|++|++.+|+.|++||+.++.... ..+++.++++.+++.+++.. .....+.+||||||||
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~qr 159 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-------KLKQSGLSLSGGQQQR 159 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHH-------HhcCCcccCCHHHHHH
Confidence 66788999999999999889999998764211 12234445555555443322 2345667899999999
Q ss_pred HHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEe---------CCeEEe
Q 041277 508 IAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQ---------DGQVME 577 (1133)
Q Consensus 508 i~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~---------~G~i~~ 577 (1133)
++||||++++|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||+|++|+ +|++++
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~ 239 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVE 239 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 99999999999999999999999999999999999988777899999999998865 99999998 899999
Q ss_pred ecCcchhccc
Q 041277 578 TGSHDELIQA 587 (1133)
Q Consensus 578 ~g~~~~l~~~ 587 (1133)
.|+++|+.+.
T Consensus 240 ~~~~~~~~~~ 249 (264)
T PRK14243 240 FDRTEKIFNS 249 (264)
T ss_pred eCCHHHHHhC
Confidence 9999999753
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-41 Score=381.73 Aligned_cols=212 Identities=26% Similarity=0.483 Sum_probs=179.2
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.|+++|++++|++. .+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.+.+ ...+++|
T Consensus 41 ~i~i~nl~k~y~~~---~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~i 116 (340)
T PRK13536 41 AIDLAGVSKSYGDK---AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARI 116 (340)
T ss_pred eEEEEEEEEEECCE---EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccE
Confidence 59999999999743 4999999999999999999999999999999999999999999999999987654 4678899
Q ss_pred eEEecCCCCcc-ccHHHHHhcCCC--CCCHHH----HHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHH
Q 041277 440 GLVSQEPALFA-TSIKENILFGKE--DASMEE----VIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIAR 512 (1133)
Q Consensus 440 ~~v~Q~~~l~~-~ti~eni~~~~~--~~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iAR 512 (1133)
||+||++.++. .|++||+.+... ..+.++ +.++++..+ +++..++. ..+||||||||++|||
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~-------L~~~~~~~----~~~LS~G~kqrv~lA~ 185 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFAR-------LESKADAR----VSDLSGGMKRRLTLAR 185 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-------CchhhCCC----hhhCCHHHHHHHHHHH
Confidence 99999999875 599999985221 122222 222222222 33333333 4589999999999999
Q ss_pred HHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 513 AIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 513 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
||+++|+++||||||++||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|+++..|+++++.+
T Consensus 186 aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 186 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999999875 58999999999999976 99999999999999999999865
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-41 Score=368.55 Aligned_cols=217 Identities=26% Similarity=0.459 Sum_probs=183.3
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCC-----CccEEEECCeecCCC--CH
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP-----LGGEIILDGVSIDKL--QL 432 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~-----~~G~i~~~g~~~~~~--~~ 432 (1133)
.|+++|++++|+++ .+|+|+||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|+++... +.
T Consensus 6 ~i~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 6 ILSTKNLNLWYGEK---HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred eEEEeeeEEEECCe---eeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 48999999999743 489999999999999999999999999999999999763 489999999998765 44
Q ss_pred HHHhhhceEEecCCCCccccHHHHHhcCCCC--C-C----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHH
Q 041277 433 KWLRSQMGLVSQEPALFATSIKENILFGKED--A-S----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQK 505 (1133)
Q Consensus 433 ~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~--~-~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 505 (1133)
...++.++|++|++.+|+.|++||+.++... . . .+++.++++..++.+ ++.+..++.+.+||||||
T Consensus 83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~G~~ 155 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWD-------EVKDRLHDSALSLSGGQQ 155 (253)
T ss_pred hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCch-------hhHHHhhcChhhCCHHHH
Confidence 5677889999999999989999999986321 1 1 122334444443322 222345566779999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchh
Q 041277 506 QRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584 (1133)
Q Consensus 506 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 584 (1133)
||++||||++.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHH
Confidence 9999999999999999999999999999999999999988777999999999999865 999999999999999999988
Q ss_pred cc
Q 041277 585 IQ 586 (1133)
Q Consensus 585 ~~ 586 (1133)
..
T Consensus 236 ~~ 237 (253)
T PRK14261 236 FE 237 (253)
T ss_pred Hh
Confidence 65
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-41 Score=360.39 Aligned_cols=202 Identities=31% Similarity=0.510 Sum_probs=172.0
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCH---HHHhh
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQL---KWLRS 437 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~---~~~r~ 437 (1133)
++++|++++|++. +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ...|+
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 4689999999642 348999999999999999999999999999999999999999999999999977654 34678
Q ss_pred hceEEecCCCCccc-cHHHHHhcCCC--CCC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHH
Q 041277 438 QMGLVSQEPALFAT-SIKENILFGKE--DAS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAI 510 (1133)
Q Consensus 438 ~i~~v~Q~~~l~~~-ti~eni~~~~~--~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~i 510 (1133)
.++|++|++.+|.. |++||+.++.. ... .+++.++++..++.+..... ..+||||||||++|
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~l 147 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRAL-----------PAELSGGEQQRVAI 147 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-----------hhhcCHHHHHHHHH
Confidence 89999999999875 99999987531 111 23345555555655444333 35899999999999
Q ss_pred HHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeE
Q 041277 511 ARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQV 575 (1133)
Q Consensus 511 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i 575 (1133)
|||++.+|+++||||||++||+++++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++
T Consensus 148 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 148 ARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999874 58999999999999876 999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-41 Score=369.99 Aligned_cols=218 Identities=28% Similarity=0.428 Sum_probs=182.6
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccC-----CCccEEEECCeecCC--CCH
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYA-----PLGGEIILDGVSIDK--LQL 432 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~-----~~~G~i~~~g~~~~~--~~~ 432 (1133)
-++++|++++|+++ ++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 24 ~l~~~~l~~~~~~~---~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 24 VFDTQNLNLWYGED---HALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred EEEEeeeEEEECCc---ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 58999999999743 48999999999999999999999999999999999987 699999999999853 345
Q ss_pred HHHhhhceEEecCCCCccccHHHHHhcCCC--CCCHH-----HHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHH
Q 041277 433 KWLRSQMGLVSQEPALFATSIKENILFGKE--DASME-----EVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQK 505 (1133)
Q Consensus 433 ~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~--~~~~~-----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 505 (1133)
..++++++|++|++.+|..|++||+.++.. ....+ .+.++++..++. +++.......+.+||||||
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~l~~~~~~~~~~LSgGe~ 173 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIW-------DELKDRLHDNAYGLSGGQQ 173 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCc-------chHHHHHhcCcccCCHHHH
Confidence 567889999999999998899999987531 11111 122223222221 1222334556779999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchh
Q 041277 506 QRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584 (1133)
Q Consensus 506 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 584 (1133)
||++|||||+++|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 174 qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~ 253 (271)
T PRK14238 174 QRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKI 253 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999865 999999999999999999998
Q ss_pred ccc
Q 041277 585 IQA 587 (1133)
Q Consensus 585 ~~~ 587 (1133)
...
T Consensus 254 ~~~ 256 (271)
T PRK14238 254 FSN 256 (271)
T ss_pred HcC
Confidence 753
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-41 Score=373.14 Aligned_cols=213 Identities=29% Similarity=0.509 Sum_probs=185.1
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.++++|++++|+. ++.+|+||||+|++|+++|++||||||||||+++|+|+..|++|+|.++|.+...- ....+++|
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~i 80 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRI 80 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhhe
Confidence 4788999999983 13499999999999999999999999999999999999999999999999998765 66788999
Q ss_pred eEEecCCCCccc-cHHHHHhcCC-----C-CCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHH
Q 041277 440 GLVSQEPALFAT-SIKENILFGK-----E-DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIAR 512 (1133)
Q Consensus 440 ~~v~Q~~~l~~~-ti~eni~~~~-----~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iAR 512 (1133)
||+||+|.+++. |++||+.|.. + ....+++.+.++..++.+.. ..+..+||+|||||++||+
T Consensus 81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~lS~G~kqrl~ia~ 149 (293)
T COG1131 81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-----------NKKVRTLSGGMKQRLSIAL 149 (293)
T ss_pred EEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-----------CcchhhcCHHHHHHHHHHH
Confidence 999999998866 9999998732 2 12245666777777665421 2234589999999999999
Q ss_pred HHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC-C-CeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 513 AIIKAPRILLLDEATSALDSESERVVQEALDKAVV-G-RTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 513 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~-~-~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
||+.+|++|||||||++|||.++..+.+.|+++.+ + +||+++||.++.+.. ||+|++|++|+++..|+.+++..
T Consensus 150 aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~ 226 (293)
T COG1131 150 ALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKE 226 (293)
T ss_pred HHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 99999999999999999999999999999998864 5 799999999999987 99999999999999999888754
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=366.22 Aligned_cols=217 Identities=29% Similarity=0.484 Sum_probs=183.5
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCC-----CccEEEECCeecC-CCCHH
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP-----LGGEIILDGVSID-KLQLK 433 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~-----~~G~i~~~g~~~~-~~~~~ 433 (1133)
.++++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++. ..+..
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 3 KFNIENLDLFYGE---NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred eEEEeccEEEECC---eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 4789999999974 3489999999999999999999999999999999999986 5999999999985 34566
Q ss_pred HHhhhceEEecCCCCccccHHHHHhcCCCC--CC-H----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHH
Q 041277 434 WLRSQMGLVSQEPALFATSIKENILFGKED--AS-M----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQ 506 (1133)
Q Consensus 434 ~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~--~~-~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 506 (1133)
.+|+.++|++|++.+|..|++||+.++... .. . +++.++++..++.+.+ .+.....+.+|||||||
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~LS~G~~q 152 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEV-------KDRLKSHAFGLSGGQQQ 152 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhh-------hHHhhcCcccCCHHHHH
Confidence 778899999999999999999999875321 11 1 2233444444443322 22334556789999999
Q ss_pred HHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhc
Q 041277 507 RIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELI 585 (1133)
Q Consensus 507 ri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 585 (1133)
|++||||++.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 153 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (249)
T PRK14253 153 RLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIF 232 (249)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998777999999999999876 9999999999999999988875
Q ss_pred c
Q 041277 586 Q 586 (1133)
Q Consensus 586 ~ 586 (1133)
.
T Consensus 233 ~ 233 (249)
T PRK14253 233 S 233 (249)
T ss_pred c
Confidence 4
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=366.76 Aligned_cols=218 Identities=30% Similarity=0.448 Sum_probs=184.0
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCC-----CccEEEECCeecCCC--CH
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP-----LGGEIILDGVSIDKL--QL 432 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~-----~~G~i~~~g~~~~~~--~~ 432 (1133)
.++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... +.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 4 KMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 5899999999974 3489999999999999999999999999999999999875 799999999998653 34
Q ss_pred HHHhhhceEEecCCCCccccHHHHHhcCCCC--C-CH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHH
Q 041277 433 KWLRSQMGLVSQEPALFATSIKENILFGKED--A-SM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQK 505 (1133)
Q Consensus 433 ~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~--~-~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 505 (1133)
...++.++|+||++.+|+.|++||+.++... . +. +++.++++.+++.+.+. .........||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 153 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVK-------DDLKKSALKLSGGQQ 153 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhh-------hHhhCCcccCCHHHH
Confidence 4667889999999999999999999875321 1 11 23444555555432221 223445678999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchh
Q 041277 506 QRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584 (1133)
Q Consensus 506 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 584 (1133)
||++||||++.+|+++||||||++||+.++..+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988767999999999999876 999999999999999999998
Q ss_pred ccc
Q 041277 585 IQA 587 (1133)
Q Consensus 585 ~~~ 587 (1133)
...
T Consensus 234 ~~~ 236 (251)
T PRK14270 234 FLE 236 (251)
T ss_pred hcC
Confidence 653
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-41 Score=374.62 Aligned_cols=216 Identities=30% Similarity=0.525 Sum_probs=180.4
Q ss_pred EEEEEEEEEcCCCC--CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCC----CHHH
Q 041277 361 VEFKCVQFAYPSRP--ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKL----QLKW 434 (1133)
Q Consensus 361 i~~~~v~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~----~~~~ 434 (1133)
|+++||+++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999997431 13589999999999999999999999999999999999999999999999998754 3456
Q ss_pred HhhhceEEecCC--CCccccHHHHHhcCCC--CCCHHHH----HHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHH
Q 041277 435 LRSQMGLVSQEP--ALFATSIKENILFGKE--DASMEEV----IEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQ 506 (1133)
Q Consensus 435 ~r~~i~~v~Q~~--~l~~~ti~eni~~~~~--~~~~~~~----~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 506 (1133)
+|+.|+|++|++ .+|+.|++||+.++.. ..+.++. .++++..++.+ ........+|||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~q 152 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISE----------SLFEKNPFELSGGQMR 152 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCCcccCCHHHHH
Confidence 788899999998 5788899999987532 1223222 22233333321 1234456789999999
Q ss_pred HHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchh
Q 041277 507 RIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584 (1133)
Q Consensus 507 ri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 584 (1133)
|++||||++.+|++|||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 153 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (280)
T PRK13649 153 RVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999998875 48999999999998865 999999999999999999888
Q ss_pred cc
Q 041277 585 IQ 586 (1133)
Q Consensus 585 ~~ 586 (1133)
.+
T Consensus 233 ~~ 234 (280)
T PRK13649 233 FQ 234 (280)
T ss_pred hc
Confidence 65
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-41 Score=367.99 Aligned_cols=217 Identities=29% Similarity=0.484 Sum_probs=182.7
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCC-----CccEEEECCeecCCC--CH
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP-----LGGEIILDGVSIDKL--QL 432 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~-----~~G~i~~~g~~~~~~--~~ 432 (1133)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... +.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 3 IIEIENFSAYYGE---KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred eEEEEeeEEEeCC---ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 4889999999974 3489999999999999999999999999999999999984 899999999988653 33
Q ss_pred HHHhhhceEEecCCCCccccHHHHHhcCCCC---CC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHH
Q 041277 433 KWLRSQMGLVSQEPALFATSIKENILFGKED---AS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQK 505 (1133)
Q Consensus 433 ~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~---~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 505 (1133)
..+++.++|++|++.+|..|++||+.++... .. .+++.++++..++.+.+. ......+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 152 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVK-------SELNKPGTRLSGGQQ 152 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhH-------HHHhCChhhcCHHHH
Confidence 4567889999999999999999999875311 11 122344455544433221 224456679999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchh
Q 041277 506 QRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584 (1133)
Q Consensus 506 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 584 (1133)
||++||||++++|+++||||||++||+.++..+.+.|.+..+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 153 qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14262 153 QRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREI 232 (250)
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999999999988778999999999998765 999999999999999999988
Q ss_pred cc
Q 041277 585 IQ 586 (1133)
Q Consensus 585 ~~ 586 (1133)
.+
T Consensus 233 ~~ 234 (250)
T PRK14262 233 VE 234 (250)
T ss_pred Hh
Confidence 65
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-41 Score=360.12 Aligned_cols=210 Identities=26% Similarity=0.451 Sum_probs=178.7
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.|+++|++++|+++ ++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 7 ~i~~~~l~~~~~~~---~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 7 LLQLQNVGYLAGDA---KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred eEEEeccEEeeCCc---eeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 48999999999743 499999999999999999999999999999999999999999999999999888877788899
Q ss_pred eEEecCCCCccccHHHHHhcCCC---CC-CHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHh
Q 041277 440 GLVSQEPALFATSIKENILFGKE---DA-SMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAII 515 (1133)
Q Consensus 440 ~~v~Q~~~l~~~ti~eni~~~~~---~~-~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~ 515 (1133)
+|++|++.+|+.|++||+.++.. .. ..+++.+.++..++. ++.....+.+||||||||++|||||+
T Consensus 84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LS~G~~qrv~laral~ 153 (225)
T PRK10247 84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALP----------DTILTKNIAELSGGEKQRISLIRNLQ 153 (225)
T ss_pred EEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCC----------hHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 99999999998899999986421 11 122233333333331 12345566799999999999999999
Q ss_pred hCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhcCCEEEEEe-CCeEEeecCcc
Q 041277 516 KAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRNADVIAVVQ-DGQVMETGSHD 582 (1133)
Q Consensus 516 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~~l~-~G~i~~~g~~~ 582 (1133)
++|+++||||||++||+.+.+.+.+.|+++. .++|+|++||+++.++.||++++|+ ++..+++|+|+
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 154 FMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 9999999999999999999999999999874 3789999999999988899999994 67777888885
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-41 Score=368.30 Aligned_cols=212 Identities=25% Similarity=0.428 Sum_probs=182.1
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 2 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAGG---RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 689999999974 35999999999999999999999999999999999999999999999999998888777888899
Q ss_pred EEecCCCC-ccccHHHHHhcCCCCC----------CHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHH
Q 041277 441 LVSQEPAL-FATSIKENILFGKEDA----------SMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIA 509 (1133)
Q Consensus 441 ~v~Q~~~l-~~~ti~eni~~~~~~~----------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~ 509 (1133)
|++|++.+ +..|++||+.++.... ..+++.++++..++.+. ....+.+||||||||++
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~ 147 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHL-----------ADRDMSTLSGGERQRVH 147 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhh-----------hcCCcccCCHHHHHHHH
Confidence 99999865 4579999998763110 11234444555544333 23345689999999999
Q ss_pred HHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 510 IARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 510 iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
||||++.+|+++||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 148 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 148 VARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 9999999999999999999999999999999999875 47899999999999965 99999999999999999988765
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-41 Score=376.98 Aligned_cols=211 Identities=20% Similarity=0.398 Sum_probs=181.6
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
++++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +...+++++|
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig 78 (301)
T TIGR03522 3 IRVSSLTKLYGT---QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEECC---EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceE
Confidence 789999999974 359999999999999999999999999999999999999999999999999876 3456788999
Q ss_pred EEecCCCCccc-cHHHHHhcCCC--CCC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHH
Q 041277 441 LVSQEPALFAT-SIKENILFGKE--DAS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARA 513 (1133)
Q Consensus 441 ~v~Q~~~l~~~-ti~eni~~~~~--~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa 513 (1133)
|+||++.++.. |++||+.+... ... .+++.++++..+ ++........+||||||||++||||
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~LS~G~~qrv~la~a 147 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVG-----------LRPEQHKKIGQLSKGYRQRVGLAQA 147 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCC-----------CchHhcCchhhCCHHHHHHHHHHHH
Confidence 99999999876 99999976321 111 123333333333 3333445567899999999999999
Q ss_pred HhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 514 IIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 514 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
|+++|++|||||||++||+.+.+.+++.++++.+++|+|++||+++.+.. ||||++|++|+++..|+++++.+
T Consensus 148 l~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 148 LIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 99999999999999999999999999999988778999999999998876 99999999999999999999865
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=378.75 Aligned_cols=228 Identities=21% Similarity=0.322 Sum_probs=185.6
Q ss_pred EEEEEEEEEcCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccC----CCccEEEECCeecCCCCHHHH
Q 041277 361 VEFKCVQFAYPSRP-ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYA----PLGGEIILDGVSIDKLQLKWL 435 (1133)
Q Consensus 361 i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~----~~~G~i~~~g~~~~~~~~~~~ 435 (1133)
|+++|++++|+.+. ...+++|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|+++.+++...+
T Consensus 4 L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (330)
T PRK15093 4 LDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRER 83 (330)
T ss_pred EEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 78999999996421 2458999999999999999999999999999999999986 589999999999988876654
Q ss_pred h----hhceEEecCCCC--cc-ccHHHHHhcCCC----------C--CCHHHHHHHHHHhchHHHHHhCCCcccccccCC
Q 041277 436 R----SQMGLVSQEPAL--FA-TSIKENILFGKE----------D--ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGER 496 (1133)
Q Consensus 436 r----~~i~~v~Q~~~l--~~-~ti~eni~~~~~----------~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~ 496 (1133)
+ +.|+||+|+|.. ++ .||.+|+..... . ...+++.++++..++.+.. ......
T Consensus 84 ~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~--------~~~~~~ 155 (330)
T PRK15093 84 RKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHK--------DAMRSF 155 (330)
T ss_pred HHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChH--------HHHhCC
Confidence 3 479999999963 33 489999864210 0 0123455556666554211 112334
Q ss_pred CCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCC
Q 041277 497 GVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDG 573 (1133)
Q Consensus 497 g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G 573 (1133)
+.+||||||||++|||||+.+|++||+||||++||+.++..+.+.|+++.+ |.|+|+|||+++.+.. ||+|++|++|
T Consensus 156 p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G 235 (330)
T PRK15093 156 PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCG 235 (330)
T ss_pred chhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 468999999999999999999999999999999999999999999998753 8999999999999976 9999999999
Q ss_pred eEEeecCcchhccccchhhHHHH
Q 041277 574 QVMETGSHDELIQAESGLYTSLV 596 (1133)
Q Consensus 574 ~i~~~g~~~~l~~~~~~~~~~~~ 596 (1133)
+|++.|+.+++.+.....|.+.+
T Consensus 236 ~ive~g~~~~i~~~p~~~y~~~l 258 (330)
T PRK15093 236 QTVETAPSKELVTTPHHPYTQAL 258 (330)
T ss_pred EEEEECCHHHHHhCCCCHHHHHH
Confidence 99999999999865556676543
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=356.57 Aligned_cols=201 Identities=27% Similarity=0.492 Sum_probs=173.6
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
|+++|++++|++. . .|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 1 i~~~~l~~~~~~~---~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 73 (211)
T cd03298 1 VRLDKIRFSYGEQ---P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVS 73 (211)
T ss_pred CEEEeEEEEeCCE---e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEE
Confidence 4789999999642 2 39999999999999999999999999999999999999999999999876654 357899
Q ss_pred EEecCCCCccc-cHHHHHhcCCC-C-----CCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHH
Q 041277 441 LVSQEPALFAT-SIKENILFGKE-D-----ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARA 513 (1133)
Q Consensus 441 ~v~Q~~~l~~~-ti~eni~~~~~-~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa 513 (1133)
|++|++.+|.. |++||+.++.. . ...+++.++++..++.+.....| .+||||||||++||||
T Consensus 74 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~ia~a 142 (211)
T cd03298 74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP-----------GELSGGERQRVALARV 142 (211)
T ss_pred EEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCc-----------ccCCHHHHHHHHHHHH
Confidence 99999999975 99999987642 1 12345666777777766555544 4899999999999999
Q ss_pred HhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeec
Q 041277 514 IIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETG 579 (1133)
Q Consensus 514 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 579 (1133)
++.+|+++||||||++||+++++.+.+.|+++. .++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 143 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 143 LVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999999999999999874 38999999999999876 9999999999998764
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-41 Score=365.21 Aligned_cols=217 Identities=26% Similarity=0.451 Sum_probs=182.1
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHH-Hhhh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKW-LRSQ 438 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~-~r~~ 438 (1133)
.++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .|+.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 3 TLTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred eEEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 3789999999974 35999999999999999999999999999999999999999999999999998776544 5678
Q ss_pred ceEEecCCCCccc-cHHHHHhcCCC---CCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHH
Q 041277 439 MGLVSQEPALFAT-SIKENILFGKE---DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAI 514 (1133)
Q Consensus 439 i~~v~Q~~~l~~~-ti~eni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal 514 (1133)
++|++|++.+|.. |++||+.++.. ..+.++. ...+.+.++.+ |++........+||||||||++||||+
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral 152 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQR-----EDRANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARAL 152 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHHH-----HHHHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHH
Confidence 9999999998875 99999987531 1111111 11223344444 344445556679999999999999999
Q ss_pred hhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 515 IKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 515 ~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
+.+|++|||||||++||+.+++.+.+.++++. +++|+|++||+++.+.. ||++++|++|++++.|++++++.
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 153 AANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 99999999999999999999999999998765 48999999999987765 99999999999999999998865
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=360.77 Aligned_cols=208 Identities=29% Similarity=0.386 Sum_probs=176.4
Q ss_pred cEEEEEEEEEcCCCCC-CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHH---H
Q 041277 360 EVEFKCVQFAYPSRPE-SIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKW---L 435 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~-~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~---~ 435 (1133)
.|+++|++++|++... .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 4899999999975321 25899999999999999999999999999999999999999999999999998776543 2
Q ss_pred -hhhceEEecCCCCccc-cHHHHHhcCCC--CC----CHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHH
Q 041277 436 -RSQMGLVSQEPALFAT-SIKENILFGKE--DA----SMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQR 507 (1133)
Q Consensus 436 -r~~i~~v~Q~~~l~~~-ti~eni~~~~~--~~----~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqr 507 (1133)
++.++|++|++.++.. |++||+.++.. .. ..+++.++++..++.+.+.+.| .+||||||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP-----------AQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh-----------hhCCHHHHHH
Confidence 3579999999999875 99999986421 11 1234556666666655554443 5899999999
Q ss_pred HHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-C-CCeEEEEecCcchhhcCCEEEEEeCCeEEee
Q 041277 508 IAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-V-GRTTIIIAHRLSTIRNADVIAVVQDGQVMET 578 (1133)
Q Consensus 508 i~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~-~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~ 578 (1133)
++|||||+.+|+++||||||++||+.+.+.+.+.|+++. + ++|+|++||+++.+..||++++|++|+++++
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 999999999999999999999999999999999998874 3 7899999999998878999999999999764
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=367.60 Aligned_cols=220 Identities=24% Similarity=0.424 Sum_probs=182.2
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHH-hhh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWL-RSQ 438 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~-r~~ 438 (1133)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ +..
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 4899999999974 359999999999999999999999999999999999999999999999999987775554 456
Q ss_pred ceEEecCCCCccc-cHHHHHhcCCCCCC--------------HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChH
Q 041277 439 MGLVSQEPALFAT-SIKENILFGKEDAS--------------MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGG 503 (1133)
Q Consensus 439 i~~v~Q~~~l~~~-ti~eni~~~~~~~~--------------~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG 503 (1133)
++|++|++.+|.. |++||+.++..... .....+ ....+.++++.+ |++........+||||
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~--gl~~~~~~~~~~LS~G 157 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESE--ALDRAATWLERV--GLLEHANRQAGNLAYG 157 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhH--HHHHHHHHHHhC--ChhhhhhCChhhCCHH
Confidence 9999999999986 99999997532100 000000 011122334443 4444556667799999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-C-CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecC
Q 041277 504 QKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-V-GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGS 580 (1133)
Q Consensus 504 qkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 580 (1133)
||||++||||++.+|++|||||||++||+.+++.+.+.|.++. + ++|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 158 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~ 237 (255)
T PRK11300 158 QQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGT 237 (255)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCC
Confidence 9999999999999999999999999999999999999998874 3 7899999999999866 99999999999999999
Q ss_pred cchhcc
Q 041277 581 HDELIQ 586 (1133)
Q Consensus 581 ~~~l~~ 586 (1133)
++++..
T Consensus 238 ~~~~~~ 243 (255)
T PRK11300 238 PEEIRN 243 (255)
T ss_pred HHHHhh
Confidence 888754
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-41 Score=371.25 Aligned_cols=213 Identities=32% Similarity=0.523 Sum_probs=180.7
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCC--CCHHHHhhh
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDK--LQLKWLRSQ 438 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~--~~~~~~r~~ 438 (1133)
++++|++++|++. .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .+...+++.
T Consensus 2 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPDG--TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCCC--CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 6899999999632 348999999999999999999999999999999999999999999999999852 234467889
Q ss_pred ceEEecCC--CCccccHHHHHhcCCC--CCCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHH
Q 041277 439 MGLVSQEP--ALFATSIKENILFGKE--DASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAI 510 (1133)
Q Consensus 439 i~~v~Q~~--~l~~~ti~eni~~~~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~i 510 (1133)
|+|++|++ .+|..|++||+.++.. ..+. +++.++++..++.++.+ ..+.+||||||||++|
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LS~Gq~qrv~l 148 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFEN-----------KPPHHLSGGQKKRVAI 148 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhc-----------CChhhCCHHHHHHHHH
Confidence 99999997 4678899999987532 1122 23445555555543332 2345899999999999
Q ss_pred HHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 511 ARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 511 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
|||++.+|+++||||||++||+.++..+.+.|.++. +++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 149 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (275)
T PRK13639 149 AGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFS 226 (275)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999999875 48999999999999875 99999999999999999998865
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-42 Score=335.19 Aligned_cols=223 Identities=25% Similarity=0.461 Sum_probs=186.2
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHH-hh
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWL-RS 437 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~-r~ 437 (1133)
+.+..+|+.++|..+ +|++++||++++||+|++.||||+||||.+.++.|+.+|++|+|.+||.|++.++.... |.
T Consensus 3 ~~L~a~~l~K~y~kr---~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArl 79 (243)
T COG1137 3 STLVAENLAKSYKKR---KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARL 79 (243)
T ss_pred cEEEehhhhHhhCCe---eeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhc
Confidence 357889999999755 49999999999999999999999999999999999999999999999999999997654 44
Q ss_pred hceEEecCCCCccc-cHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhh
Q 041277 438 QMGLVSQEPALFAT-SIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIK 516 (1133)
Q Consensus 438 ~i~~v~Q~~~l~~~-ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~ 516 (1133)
.|||+||||.+|.+ ||+|||..-.+ ..+.+...+.+...+++.++.+ .+...-...+.+||||||+|+.|||||..
T Consensus 80 GigYLpQE~SIFr~LtV~dNi~~vlE-~~~~d~~~~~~~~~l~~LL~ef--~i~hlr~~~a~sLSGGERRR~EIARaLa~ 156 (243)
T COG1137 80 GIGYLPQEASIFRKLTVEDNIMAVLE-IREKDLKKAERKEELDALLEEF--HITHLRDSKAYSLSGGERRRVEIARALAA 156 (243)
T ss_pred CcccccccchHhhcCcHHHHHHHHHh-hhhcchhHHHHHHHHHHHHHHh--chHHHhcCcccccccchHHHHHHHHHHhc
Confidence 69999999999987 99999986432 1111111122222233344443 23444456678999999999999999999
Q ss_pred CCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcc-hhhcCCEEEEEeCCeEEeecCcchhccc
Q 041277 517 APRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLS-TIRNADVIAVVQDGQVMETGSHDELIQA 587 (1133)
Q Consensus 517 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~-~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 587 (1133)
+|+.+|||||++++||.+-..|++.++.+. +|--|++.-|+.. ++.-|||.+++.+|+|..+|+++|+.++
T Consensus 157 ~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n 229 (243)
T COG1137 157 NPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN 229 (243)
T ss_pred CCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcC
Confidence 999999999999999999999999999876 5888999999986 5667999999999999999999999874
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=358.79 Aligned_cols=204 Identities=27% Similarity=0.450 Sum_probs=172.4
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHH---HHhh
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLK---WLRS 437 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~---~~r~ 437 (1133)
|+++|++++|+.. ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+.. .+|+
T Consensus 2 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLGG--RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecCC--CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 6899999999422 3589999999999999999999999999999999999999999999999999876543 3678
Q ss_pred hceEEecCCCCc-cccHHHHHhcCCC--CCCHH----HHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHH
Q 041277 438 QMGLVSQEPALF-ATSIKENILFGKE--DASME----EVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAI 510 (1133)
Q Consensus 438 ~i~~v~Q~~~l~-~~ti~eni~~~~~--~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~i 510 (1133)
.++|++|++.++ ..|++||+.++.. ..+.+ ++.++++..++.+...+ ...+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~l 148 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKN-----------FPIQLSGGEQQRVGI 148 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhC-----------CchhCCHHHHHHHHH
Confidence 899999999875 5699999987531 12222 23444555555444333 346899999999999
Q ss_pred HHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEe
Q 041277 511 ARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVME 577 (1133)
Q Consensus 511 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~ 577 (1133)
|||++.+|++|||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|+++.
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 149 ARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 999999999999999999999999999999999874 47899999999999876 99999999999864
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-41 Score=382.01 Aligned_cols=211 Identities=27% Similarity=0.448 Sum_probs=182.4
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCC----CHHHHh
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKL----QLKWLR 436 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~----~~~~~r 436 (1133)
|++ |++++|++. .+ |+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+. +....+
T Consensus 2 l~~-~l~k~~~~~----~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 2 LEL-NFKQQLGDL----CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred eEE-EEEEEeCCE----EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 566 899999642 23 89999999999999999999999999999999999999999999998653 234457
Q ss_pred hhceEEecCCCCcc-ccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHh
Q 041277 437 SQMGLVSQEPALFA-TSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAII 515 (1133)
Q Consensus 437 ~~i~~v~Q~~~l~~-~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~ 515 (1133)
++++||+|++.+|+ .|++||+.++.+....+++.+.++..++.++.++.| .+||||||||++|||||+
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~LSgGq~qRvalaraL~ 144 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYP-----------GSLSGGEKQRVAIGRALL 144 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCc-----------ccCCHHHHHHHHHHHHHH
Confidence 78999999999996 599999998755444556667777776655554443 589999999999999999
Q ss_pred hCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcccc
Q 041277 516 KAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQAE 588 (1133)
Q Consensus 516 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 588 (1133)
.+|++|||||||++||+.+++.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++...+
T Consensus 145 ~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p 220 (352)
T PRK11144 145 TAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASS 220 (352)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCc
Confidence 99999999999999999999999999988753 7899999999998865 9999999999999999999998643
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=367.09 Aligned_cols=218 Identities=31% Similarity=0.453 Sum_probs=184.4
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCC-----CccEEEECCeecCC--CC
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP-----LGGEIILDGVSIDK--LQ 431 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~-----~~G~i~~~g~~~~~--~~ 431 (1133)
+.++++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++.+ .+
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (259)
T PRK14260 6 PAIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRIN 82 (259)
T ss_pred ceEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccc
Confidence 35899999999974 3489999999999999999999999999999999999985 48999999999864 34
Q ss_pred HHHHhhhceEEecCCCCccccHHHHHhcCCCC---CC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHH
Q 041277 432 LKWLRSQMGLVSQEPALFATSIKENILFGKED---AS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQ 504 (1133)
Q Consensus 432 ~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~---~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 504 (1133)
...++++++|++|++.+|+.|++||+.++... .. .+.+.++++.+++.+++.. .....+.+|||||
T Consensus 83 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~G~ 155 (259)
T PRK14260 83 INRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKD-------KLNKSALGLSGGQ 155 (259)
T ss_pred hHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHH
Confidence 45678899999999999999999999875211 11 1234455666665433322 2344567899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEe-----CCeEEee
Q 041277 505 KQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQ-----DGQVMET 578 (1133)
Q Consensus 505 kqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~-----~G~i~~~ 578 (1133)
|||++||||++++|+++||||||++||+.+++.+.+.|++..+++|+|++||+++.+.. ||++++|+ +|++++.
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 235 (259)
T PRK14260 156 QQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEF 235 (259)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEe
Confidence 99999999999999999999999999999999999999988777999999999999876 99999998 5999999
Q ss_pred cCcchhcc
Q 041277 579 GSHDELIQ 586 (1133)
Q Consensus 579 g~~~~l~~ 586 (1133)
|+++++.+
T Consensus 236 ~~~~~~~~ 243 (259)
T PRK14260 236 GVTTQIFS 243 (259)
T ss_pred CCHHHHhc
Confidence 99999865
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=356.11 Aligned_cols=210 Identities=28% Similarity=0.435 Sum_probs=185.2
Q ss_pred EEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCH----HHHhh
Q 041277 362 EFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQL----KWLRS 437 (1133)
Q Consensus 362 ~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~----~~~r~ 437 (1133)
.+.|++|+|+.+ .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ...|+
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 578999999754 358999999999999999999999999999999999999999999999998876542 23567
Q ss_pred hceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhC
Q 041277 438 QMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKA 517 (1133)
Q Consensus 438 ~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 517 (1133)
.++|++|++.+|+.|++||+.++.+ ...++..++++..++.+.+..+|.|+++.++....+||||||||++||||++.+
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 158 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSP-FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQN 158 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCc-CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhC
Confidence 7999999999998899999998653 344556677888888888899999999999999999999999999999999999
Q ss_pred CCEEEEeCcccCCChHHHHHHHH--HHHHHh-CCCeEEEEecCcchhhcCCEEEEEeCCe
Q 041277 518 PRILLLDEATSALDSESERVVQE--ALDKAV-VGRTTIIIAHRLSTIRNADVIAVVQDGQ 574 (1133)
Q Consensus 518 ~~illlDE~ts~lD~~~~~~i~~--~l~~~~-~~~t~i~itH~~~~~~~~d~i~~l~~G~ 574 (1133)
|+++||||||++||+.+...+.+ .++... +++|+|++||+.+.+..||++++|++|+
T Consensus 159 p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 159 TNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999999988887 455443 4789999999999988899999999884
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=367.16 Aligned_cols=218 Identities=27% Similarity=0.457 Sum_probs=184.1
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCC-----CccEEEECCeecCCCC-HH
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP-----LGGEIILDGVSIDKLQ-LK 433 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~-----~~G~i~~~g~~~~~~~-~~ 433 (1133)
.++++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.+.+ ..
T Consensus 21 ~l~i~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 21 AMAAVNLTLGFAG---KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred EEEEeeEEEEECC---EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 5899999999974 3589999999999999999999999999999999999986 7999999999987653 34
Q ss_pred HHhhhceEEecCCCCccccHHHHHhcCCC---CCCHHHHH----HHHHHhchHHHHHhCCCcccccccCCCCCCChHHHH
Q 041277 434 WLRSQMGLVSQEPALFATSIKENILFGKE---DASMEEVI----EAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQ 506 (1133)
Q Consensus 434 ~~r~~i~~v~Q~~~l~~~ti~eni~~~~~---~~~~~~~~----~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 506 (1133)
.++++++|++|++.+|+.|++||+.++.. ..+.++.. +.++..++. +.+.+.....+.+|||||||
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~l~~~~~~LSgGq~q 170 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLW-------DAVKDRLSDSPFRLSGGQQQ 170 (276)
T ss_pred HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCC-------chhhhHhhCCcccCCHHHHH
Confidence 67889999999999999999999987532 12333332 222333222 22223445667799999999
Q ss_pred HHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhc
Q 041277 507 RIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELI 585 (1133)
Q Consensus 507 ri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 585 (1133)
|++||||++.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 171 rl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 171 LLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLF 250 (276)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988667899999999999875 9999999999999999999987
Q ss_pred cc
Q 041277 586 QA 587 (1133)
Q Consensus 586 ~~ 587 (1133)
+.
T Consensus 251 ~~ 252 (276)
T PRK14271 251 SS 252 (276)
T ss_pred hC
Confidence 63
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-41 Score=358.41 Aligned_cols=201 Identities=32% Similarity=0.512 Sum_probs=169.5
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCC--CCHHHHhhh
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDK--LQLKWLRSQ 438 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~--~~~~~~r~~ 438 (1133)
++++|++++|+++ ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .+...++++
T Consensus 1 l~~~~l~~~~~~~---~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFGDF---HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEECCe---EeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 4789999999743 48999999999999999999999999999999999999999999999999853 344567789
Q ss_pred ceEEecCCCCcc-ccHHHHHhcCCC---CCCHH----HHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHH
Q 041277 439 MGLVSQEPALFA-TSIKENILFGKE---DASME----EVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAI 510 (1133)
Q Consensus 439 i~~v~Q~~~l~~-~ti~eni~~~~~---~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~i 510 (1133)
++|++|++.+|. .|++||+.++.. ....+ ++.++++..++.+. ......+||||||||++|
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~l 146 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADK-----------ADAYPAQLSGGQQQRVAI 146 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhH-----------hhhCccccCHHHHHHHHH
Confidence 999999999986 599999987531 12222 23334444444333 334446899999999999
Q ss_pred HHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeE
Q 041277 511 ARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQV 575 (1133)
Q Consensus 511 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i 575 (1133)
|||++.+|+++||||||++||+.+++.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++
T Consensus 147 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 147 ARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999875 47999999999999875 999999999974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=368.70 Aligned_cols=218 Identities=28% Similarity=0.491 Sum_probs=182.8
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccC-----CCccEEEECCeecCC--CC
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYA-----PLGGEIILDGVSIDK--LQ 431 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~-----~~~G~i~~~g~~~~~--~~ 431 (1133)
..|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.+ .+
T Consensus 38 ~~l~i~~l~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 38 TVIEARDLNVFYGD---EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred ceEEEEEEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 45899999999974 349999999999999999999999999999999999997 689999999999864 34
Q ss_pred HHHHhhhceEEecCCCCccccHHHHHhcCCCC--C---CHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHH
Q 041277 432 LKWLRSQMGLVSQEPALFATSIKENILFGKED--A---SMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQ 506 (1133)
Q Consensus 432 ~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~--~---~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 506 (1133)
...++++++|++|++.+|+.|++||+.++... . ..+++.++++..++.+.+. ....+++.+|||||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LSgGe~q 187 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVK-------DQLDSSGLDLSGGQQQ 187 (285)
T ss_pred hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhH-------HHHhCCcccCCHHHHH
Confidence 55678899999999999988999999874211 1 1234455555554432221 1234556799999999
Q ss_pred HHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEE-EEeCCeEEeecCcchh
Q 041277 507 RIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIA-VVQDGQVMETGSHDEL 584 (1133)
Q Consensus 507 ri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~-~l~~G~i~~~g~~~~l 584 (1133)
|++|||||+++|+||||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. |||++ +|++|++++.|+++++
T Consensus 188 rv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 188 RLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKI 267 (285)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999988767899999999999876 99975 5799999999999887
Q ss_pred cc
Q 041277 585 IQ 586 (1133)
Q Consensus 585 ~~ 586 (1133)
..
T Consensus 268 ~~ 269 (285)
T PRK14254 268 FE 269 (285)
T ss_pred Hh
Confidence 64
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=358.74 Aligned_cols=212 Identities=33% Similarity=0.480 Sum_probs=172.3
Q ss_pred EEEEEEEEEcCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCH---HHHh
Q 041277 361 VEFKCVQFAYPSRP-ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQL---KWLR 436 (1133)
Q Consensus 361 i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~---~~~r 436 (1133)
|+++||+++|+++. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 68999999997431 1258999999999999999999999999999999999999999999999999987663 5677
Q ss_pred hhceEEecCCC--Cc-cccHHHHHhcCCC----CCCHHHHHHHHHHhchHHHHHhCCCccc-ccccCCCCCCChHHHHHH
Q 041277 437 SQMGLVSQEPA--LF-ATSIKENILFGKE----DASMEEVIEAAKASNAHNFIRQLPQQYD-TQVGERGVQMSGGQKQRI 508 (1133)
Q Consensus 437 ~~i~~v~Q~~~--l~-~~ti~eni~~~~~----~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGqkqri 508 (1133)
++++|++|++. ++ ..|++||+.++.. ....+...++. .+.++.+ |+. ........+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv 154 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAV-----LLLLVGV--GLPEEVLNRYPHELSGGQRQRV 154 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHH-----HHHHHHC--CCChhHhhCCchhcCHHHHHHH
Confidence 89999999993 44 4699999976421 11111111110 1223333 221 234556678999999999
Q ss_pred HHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEEeec
Q 041277 509 AIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETG 579 (1133)
Q Consensus 509 ~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 579 (1133)
+||||++.+|++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 155 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 155 AIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999999999999999998753 8999999999999874 9999999999998765
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=342.93 Aligned_cols=172 Identities=42% Similarity=0.699 Sum_probs=161.2
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
|+++|++++|++. +.++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...++++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 4789999999743 235899999999999999999999999999999999999999999999999998888888889999
Q ss_pred EEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCE
Q 041277 441 LVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRI 520 (1133)
Q Consensus 441 ~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~i 520 (1133)
|++|++.+|+.|++||+ ||||||||++||||++.+|++
T Consensus 80 ~~~q~~~~~~~tv~~~l------------------------------------------LS~G~~qrv~la~al~~~p~~ 117 (173)
T cd03246 80 YLPQDDELFSGSIAENI------------------------------------------LSGGQRQRLGLARALYGNPRI 117 (173)
T ss_pred EECCCCccccCcHHHHC------------------------------------------cCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999998 999999999999999999999
Q ss_pred EEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhcCCEEEEEeCCeE
Q 041277 521 LLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRNADVIAVVQDGQV 575 (1133)
Q Consensus 521 lllDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~~l~~G~i 575 (1133)
+||||||++||+.+++.+.+.++++. +++|+|++||+++.+..||++++|++|++
T Consensus 118 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 118 LVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 99999999999999999999998875 48999999999998878999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=363.28 Aligned_cols=218 Identities=31% Similarity=0.507 Sum_probs=185.4
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccC-----CCccEEEECCeecCCC--CH
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYA-----PLGGEIILDGVSIDKL--QL 432 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~-----~~~G~i~~~g~~~~~~--~~ 432 (1133)
.++++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.+||.++... +.
T Consensus 3 ~l~~~~v~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 79 (250)
T PRK14266 3 RIEVENLNTYFDD---AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDV 79 (250)
T ss_pred EEEEEeEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccH
Confidence 3789999999974 349999999999999999999999999999999999864 4899999999998653 35
Q ss_pred HHHhhhceEEecCCCCccccHHHHHhcCCC--CC-CH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHH
Q 041277 433 KWLRSQMGLVSQEPALFATSIKENILFGKE--DA-SM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQK 505 (1133)
Q Consensus 433 ~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~--~~-~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 505 (1133)
..++++++|+||++.+|+.|++||+.++.. .. +. +++.++++.+++.+++..+ ..+.+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-------~~~~~~~LS~Gq~ 152 (250)
T PRK14266 80 VELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDK-------LDKSALGLSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHH-------HhCCcccCCHHHH
Confidence 567889999999999999999999987532 11 11 2345556666665444321 3445678999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchh
Q 041277 506 QRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584 (1133)
Q Consensus 506 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 584 (1133)
||++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14266 153 QRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQI 232 (250)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999998876 999999999999999999998
Q ss_pred ccc
Q 041277 585 IQA 587 (1133)
Q Consensus 585 ~~~ 587 (1133)
...
T Consensus 233 ~~~ 235 (250)
T PRK14266 233 FIN 235 (250)
T ss_pred HhC
Confidence 653
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=359.11 Aligned_cols=208 Identities=31% Similarity=0.506 Sum_probs=181.4
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
++++||+++|+.. ..|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ++.++
T Consensus 2 l~~~~l~~~~~~~-----~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~--~~~i~ 74 (232)
T PRK10771 2 LKLTDITWLYHHL-----PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS--RRPVS 74 (232)
T ss_pred eEEEEEEEEECCc-----cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChh--hccEE
Confidence 6899999999632 2499999999999999999999999999999999999999999999998765442 56799
Q ss_pred EEecCCCCccc-cHHHHHhcCCC-C-----CCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHH
Q 041277 441 LVSQEPALFAT-SIKENILFGKE-D-----ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARA 513 (1133)
Q Consensus 441 ~v~Q~~~l~~~-ti~eni~~~~~-~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa 513 (1133)
|++|++.+|.. |++||+.++.. . ...+++.++++..++.+.+.+.| ..||||||||++||||
T Consensus 75 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~lara 143 (232)
T PRK10771 75 MLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-----------GQLSGGQRQRVALARC 143 (232)
T ss_pred EEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc-----------ccCCHHHHHHHHHHHH
Confidence 99999999975 99999987531 1 12345677777777777666655 4899999999999999
Q ss_pred HhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 514 IIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 514 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
++++|+++||||||++||+.+++.+.+.|+++. .++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 144 l~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~ 219 (232)
T PRK10771 144 LVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLS 219 (232)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999999999999999874 37899999999999875 99999999999999999988875
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=356.75 Aligned_cols=201 Identities=21% Similarity=0.448 Sum_probs=169.5
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
++++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ..+++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~ 73 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIG 73 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEE
Confidence 478999999974 348999999999999999999999999999999999999999999999988753 4567899
Q ss_pred EEecCCCCccc-cHHHHHhcCCC--CCC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHH
Q 041277 441 LVSQEPALFAT-SIKENILFGKE--DAS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARA 513 (1133)
Q Consensus 441 ~v~Q~~~l~~~-ti~eni~~~~~--~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa 513 (1133)
|++|++.++.. |++||+.++.. ... .+++.+.++..++.+ .......+||||||||++||||
T Consensus 74 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~la~a 142 (210)
T cd03269 74 YLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSE-----------YANKRVEELSKGNQQKVQFIAA 142 (210)
T ss_pred EeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChH-----------HHhCcHhhCCHHHHHHHHHHHH
Confidence 99999999875 99999987421 111 122333444444433 3334556899999999999999
Q ss_pred HhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeec
Q 041277 514 IIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETG 579 (1133)
Q Consensus 514 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 579 (1133)
++.+|+++||||||++||+.+++.+.+.+++.. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 143 l~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 143 VIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 999999999999999999999999999998864 57899999999998865 9999999999998764
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=361.25 Aligned_cols=210 Identities=34% Similarity=0.542 Sum_probs=181.4
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
|+++|++++|++. ++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+. .++.++
T Consensus 1 l~~~~l~~~~~~~---~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~ 75 (232)
T cd03300 1 IELENVSKFYGGF---VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVN 75 (232)
T ss_pred CEEEeEEEEeCCe---eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceE
Confidence 4689999999743 49999999999999999999999999999999999999999999999999876654 257899
Q ss_pred EEecCCCCccc-cHHHHHhcCCC--CCC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHH
Q 041277 441 LVSQEPALFAT-SIKENILFGKE--DAS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARA 513 (1133)
Q Consensus 441 ~v~Q~~~l~~~-ti~eni~~~~~--~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa 513 (1133)
|++|++.+|.+ |++||+.++.. ..+ .+++.++++..++.+++...| .+||||||||++||||
T Consensus 76 ~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrl~lara 144 (232)
T cd03300 76 TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKP-----------SQLSGGQQQRVAIARA 144 (232)
T ss_pred EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999965 99999986531 111 234555666666655555444 5899999999999999
Q ss_pred HhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 514 IIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 514 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
++.+|+++||||||++||+.+++.+.+.++++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 145 l~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~ 220 (232)
T cd03300 145 LVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYE 220 (232)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHh
Confidence 9999999999999999999999999999998753 8999999999999865 99999999999999999888765
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=345.26 Aligned_cols=220 Identities=27% Similarity=0.455 Sum_probs=184.7
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHH-hhhc
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWL-RSQM 439 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~-r~~i 439 (1133)
++.++++++|++- .+++|+||++++||+++|+|||||||||++|+|.|+|+|++|+|.++|+||..++++.. |..|
T Consensus 5 L~v~~l~k~FGGl---~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 5 LEVRGLSKRFGGL---TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred eeeccceeecCCE---EEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence 5789999999853 48999999999999999999999999999999999999999999999999999998775 4569
Q ss_pred eEEecCCCCccc-cHHHHHhcCCCCC-----------CHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHH
Q 041277 440 GLVSQEPALFAT-SIKENILFGKEDA-----------SMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQR 507 (1133)
Q Consensus 440 ~~v~Q~~~l~~~-ti~eni~~~~~~~-----------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqr 507 (1133)
+--||.+.+|++ ||.||+..+.... ...+-.++.+.+ .+.++.+ |++....+...+||+|||+|
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A--~~~Le~v--gL~~~a~~~A~~LsyG~qR~ 157 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERA--RELLEFV--GLGELADRPAGNLSYGQQRR 157 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHH--HHHHHHc--CCchhhcchhhcCChhHhHH
Confidence 999999999976 9999998863211 000111111111 2233332 44444555567899999999
Q ss_pred HHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchh
Q 041277 508 IAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584 (1133)
Q Consensus 508 i~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 584 (1133)
+.|||||+.+|++|+||||.++|.+.....+.+.|+++.+ |.|+++|.||++.+.. ||||+||+.|+++.+|+|+|+
T Consensus 158 LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV 237 (250)
T COG0411 158 LEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEV 237 (250)
T ss_pred HHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHH
Confidence 9999999999999999999999999999999999999874 5999999999999876 999999999999999999999
Q ss_pred ccc
Q 041277 585 IQA 587 (1133)
Q Consensus 585 ~~~ 587 (1133)
.++
T Consensus 238 ~~d 240 (250)
T COG0411 238 RNN 240 (250)
T ss_pred hcC
Confidence 864
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=364.54 Aligned_cols=211 Identities=28% Similarity=0.444 Sum_probs=178.7
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCC---ccEEEECCeecCCC-----C
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPL---GGEIILDGVSIDKL-----Q 431 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~---~G~i~~~g~~~~~~-----~ 431 (1133)
-|+++||+++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++... +
T Consensus 4 ~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFNQ---HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeCC---eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 4899999999974 34899999999999999999999999999999999999986 49999999998653 2
Q ss_pred HHHHhhhceEEecCCCCccc-cHHHHHhcCCCCC--------------CHHHHHHHHHHhchHHHHHhCCCcccccccCC
Q 041277 432 LKWLRSQMGLVSQEPALFAT-SIKENILFGKEDA--------------SMEEVIEAAKASNAHNFIRQLPQQYDTQVGER 496 (1133)
Q Consensus 432 ~~~~r~~i~~v~Q~~~l~~~-ti~eni~~~~~~~--------------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~ 496 (1133)
...++++++|+||++.+|.. |++||+.++.... ..+++.++++..++.+.+ ...
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~ 149 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFA-----------HQR 149 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHH-----------hCC
Confidence 34567889999999998874 9999998763210 112344455555554433 334
Q ss_pred CCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCC
Q 041277 497 GVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDG 573 (1133)
Q Consensus 497 g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G 573 (1133)
..+||||||||++||||++.+|++|||||||++||+++.+.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g 229 (262)
T PRK09984 150 VSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQG 229 (262)
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 56899999999999999999999999999999999999999999999875 37999999999998755 9999999999
Q ss_pred eEEeecCcchh
Q 041277 574 QVMETGSHDEL 584 (1133)
Q Consensus 574 ~i~~~g~~~~l 584 (1133)
++++.|+++++
T Consensus 230 ~i~~~g~~~~~ 240 (262)
T PRK09984 230 HVFYDGSSQQF 240 (262)
T ss_pred EEEEeCCHHHh
Confidence 99999999986
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=359.16 Aligned_cols=210 Identities=33% Similarity=0.486 Sum_probs=179.2
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
|+++|++++|+++ ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 1 i~i~~l~~~~~~~---~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~ 75 (237)
T TIGR00968 1 IEIANISKRFGSF---QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIG 75 (237)
T ss_pred CEEEEEEEEECCe---eeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEE
Confidence 4789999999743 49999999999999999999999999999999999999999999999999876543 467899
Q ss_pred EEecCCCCccc-cHHHHHhcCCCC--CC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHH
Q 041277 441 LVSQEPALFAT-SIKENILFGKED--AS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARA 513 (1133)
Q Consensus 441 ~v~Q~~~l~~~-ti~eni~~~~~~--~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa 513 (1133)
|+||++.+|++ |++||+.++.+. .+ .+++.++++..++.++.+ ....+||||||||++||||
T Consensus 76 ~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~lS~G~~qrl~lara 144 (237)
T TIGR00968 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGD-----------RYPNQLSGGQRQRVALARA 144 (237)
T ss_pred EEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-----------CChhhCCHHHHHHHHHHHH
Confidence 99999999975 999999875421 11 223344444444433333 3346899999999999999
Q ss_pred HhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 514 IIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 514 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
++++|+++||||||++||+++++.+.+.|++..+ ++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 145 l~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 220 (237)
T TIGR00968 145 LAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYD 220 (237)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHc
Confidence 9999999999999999999999999999998653 7999999999998866 99999999999999999999865
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=369.21 Aligned_cols=219 Identities=27% Similarity=0.414 Sum_probs=182.1
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccC-----CCccEEEECCeecCCC--C
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYA-----PLGGEIILDGVSIDKL--Q 431 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~-----~~~G~i~~~g~~~~~~--~ 431 (1133)
..|+++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|.++... +
T Consensus 38 ~~l~~~~l~~~~~~~---~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 38 PHVVAKNFSIYYGEF---EAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred eEEEEeeeEEEECCE---EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 458999999999743 48999999999999999999999999999999999864 4999999999998643 2
Q ss_pred HHHHhhhceEEecCCCCccccHHHHHhcCCC--CC-C----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHH
Q 041277 432 LKWLRSQMGLVSQEPALFATSIKENILFGKE--DA-S----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQ 504 (1133)
Q Consensus 432 ~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~--~~-~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 504 (1133)
...+|++++|++|++.+|+.|++||+.++.. .. . .+++.++++..++.+.+ .......+..|||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LSgGq 187 (286)
T PRK14275 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEV-------SDRLDKNALGLSGGQ 187 (286)
T ss_pred hHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccch-------hhHhhCChhhCCHHH
Confidence 3456788999999999998899999997532 11 1 12233444444432111 112344567899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcch
Q 041277 505 KQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDE 583 (1133)
Q Consensus 505 kqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 583 (1133)
|||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 188 ~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~ 267 (286)
T PRK14275 188 QQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQ 267 (286)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988777899999999999875 99999999999999999999
Q ss_pred hccc
Q 041277 584 LIQA 587 (1133)
Q Consensus 584 l~~~ 587 (1133)
+.+.
T Consensus 268 ~~~~ 271 (286)
T PRK14275 268 LFTN 271 (286)
T ss_pred HHhC
Confidence 8753
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=365.49 Aligned_cols=217 Identities=30% Similarity=0.482 Sum_probs=181.1
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCC-----CccEEEECCeecCC--CCH
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP-----LGGEIILDGVSIDK--LQL 432 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~-----~~G~i~~~g~~~~~--~~~ 432 (1133)
.++++|++++|+++ ++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. .+.
T Consensus 4 ~l~i~~v~~~~~~~---~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 4 RIDVKDLNIYYGSF---HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred cEEEeeEEEEECCE---eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 48999999999743 489999999999999999999999999999999999974 69999999999853 345
Q ss_pred HHHhhhceEEecCCCCcc-ccHHHHHhcCCC--C-CCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHH
Q 041277 433 KWLRSQMGLVSQEPALFA-TSIKENILFGKE--D-ASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQ 504 (1133)
Q Consensus 433 ~~~r~~i~~v~Q~~~l~~-~ti~eni~~~~~--~-~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 504 (1133)
..+|+.++|++|++.+|. .|++||+.++.. . ... +.+.++++..++.+.+ .........+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~ 153 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEV-------KDRLDKPGGGLSGGQ 153 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------hhHhhCCcccCCHHH
Confidence 567888999999999987 499999986431 1 111 2334444444443222 122344567899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEe------CCeEEe
Q 041277 505 KQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQ------DGQVME 577 (1133)
Q Consensus 505 kqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~------~G~i~~ 577 (1133)
|||++||||++.+|+++||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||+|++|+ +|++++
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~ 233 (258)
T PRK14241 154 QQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVE 233 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEe
Confidence 99999999999999999999999999999999999999988777999999999999865 99999997 899999
Q ss_pred ecCcchhcc
Q 041277 578 TGSHDELIQ 586 (1133)
Q Consensus 578 ~g~~~~l~~ 586 (1133)
.|+++++..
T Consensus 234 ~~~~~~~~~ 242 (258)
T PRK14241 234 IDDTEKIFS 242 (258)
T ss_pred cCCHHHHHh
Confidence 999998865
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=363.51 Aligned_cols=218 Identities=29% Similarity=0.428 Sum_probs=186.2
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCC-----CccEEEECCeecCCC--CH
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP-----LGGEIILDGVSIDKL--QL 432 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~-----~~G~i~~~g~~~~~~--~~ 432 (1133)
.+.+++++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++... +.
T Consensus 8 ~~~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 84 (261)
T PRK14263 8 VMDCKLDKIFYGN---FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84 (261)
T ss_pred eEEEEeEEEEeCC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence 5789999999964 3589999999999999999999999999999999999987 799999999998643 33
Q ss_pred HHHhhhceEEecCCCCccccHHHHHhcCCCC-----CCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHH
Q 041277 433 KWLRSQMGLVSQEPALFATSIKENILFGKED-----ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQR 507 (1133)
Q Consensus 433 ~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqr 507 (1133)
..+++.++|++|++.+|..|++||+.++... ...+++.++++..++.+.+.. ..++.+.+||||||||
T Consensus 85 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~~qr 157 (261)
T PRK14263 85 VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-------KLKVSGLSLSGGQQQR 157 (261)
T ss_pred HhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccCCHHHHHH
Confidence 4567889999999999989999999876321 112355666666665443322 2345667899999999
Q ss_pred HHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEe--------CCeEEee
Q 041277 508 IAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQ--------DGQVMET 578 (1133)
Q Consensus 508 i~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~--------~G~i~~~ 578 (1133)
++||||++++|++|||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||+|++|+ +|++++.
T Consensus 158 v~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~ 237 (261)
T PRK14263 158 LCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEM 237 (261)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEe
Confidence 99999999999999999999999999999999999988778999999999998865 99999996 8999999
Q ss_pred cCcchhccc
Q 041277 579 GSHDELIQA 587 (1133)
Q Consensus 579 g~~~~l~~~ 587 (1133)
|+++++.+.
T Consensus 238 g~~~~~~~~ 246 (261)
T PRK14263 238 GPTAQIFQN 246 (261)
T ss_pred CCHHHHHhC
Confidence 999998753
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=363.97 Aligned_cols=219 Identities=29% Similarity=0.457 Sum_probs=180.4
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCC-----ccEEEECCeecCC--CCH
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPL-----GGEIILDGVSIDK--LQL 432 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~-----~G~i~~~g~~~~~--~~~ 432 (1133)
-++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++.+ .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T PRK14272 4 LLSAQDVNIYYGD---KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80 (252)
T ss_pred EEEEeeeEEEECC---EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence 3789999999974 35999999999999999999999999999999999999874 8999999999865 334
Q ss_pred HHHhhhceEEecCCCCccc-cHHHHHhcCCC--CC-CHHHHHHH----HHHhchHHHHHhCCCcccccccCCCCCCChHH
Q 041277 433 KWLRSQMGLVSQEPALFAT-SIKENILFGKE--DA-SMEEVIEA----AKASNAHNFIRQLPQQYDTQVGERGVQMSGGQ 504 (1133)
Q Consensus 433 ~~~r~~i~~v~Q~~~l~~~-ti~eni~~~~~--~~-~~~~~~~~----~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 504 (1133)
..+|+.++|++|++.+|.. |++||+.++.. .. ..++..+. ++..++.+.+ ++. ......+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~----~~~~~~~LS~G~ 153 (252)
T PRK14272 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEV---KDR----LKTPATGLSGGQ 153 (252)
T ss_pred HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhh---hhh----hcCCcccCCHHH
Confidence 5678889999999999875 99999986432 11 22222222 2222222111 122 233456899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcch
Q 041277 505 KQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDE 583 (1133)
Q Consensus 505 kqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 583 (1133)
|||++||||++++|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 154 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14272 154 QQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQ 233 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988778999999999999876 99999999999999999999
Q ss_pred hcccc
Q 041277 584 LIQAE 588 (1133)
Q Consensus 584 l~~~~ 588 (1133)
++..+
T Consensus 234 ~~~~~ 238 (252)
T PRK14272 234 LFTNP 238 (252)
T ss_pred HHhCc
Confidence 87643
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-40 Score=363.17 Aligned_cols=212 Identities=27% Similarity=0.420 Sum_probs=181.4
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCC--------ccEEEECCeecCCCCH
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPL--------GGEIILDGVSIDKLQL 432 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~--------~G~i~~~g~~~~~~~~ 432 (1133)
|+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++...+.
T Consensus 2 l~~~nl~~~~~~~---~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 2 LTADHLHVARRHR---AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred eEEEEEEEEECCE---eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 6899999999643 4999999999999999999999999999999999999998 9999999999988777
Q ss_pred HHHhhhceEEecCCC-CccccHHHHHhcCCCCC-------C---HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCC
Q 041277 433 KWLRSQMGLVSQEPA-LFATSIKENILFGKEDA-------S---MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMS 501 (1133)
Q Consensus 433 ~~~r~~i~~v~Q~~~-l~~~ti~eni~~~~~~~-------~---~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LS 501 (1133)
..+++.++|++|++. +|..|++||+.++.... . .+.+.++++..+ +++..+....+||
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS 147 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAG-----------ATALVGRDVTTLS 147 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcC-----------cHhhhcCCcccCC
Confidence 778888999999986 46789999998753110 1 112333333333 4444555667999
Q ss_pred hHHHHHHHHHHHHh---------hCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEE
Q 041277 502 GGQKQRIAIARAII---------KAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAV 569 (1133)
Q Consensus 502 gGqkqri~iARal~---------~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~ 569 (1133)
||||||++|||||+ .+|++|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+.. ||++++
T Consensus 148 gG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~ 227 (272)
T PRK13547 148 GGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAM 227 (272)
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEE
Confidence 99999999999999 59999999999999999999999999998753 7999999999999865 999999
Q ss_pred EeCCeEEeecCcchhcc
Q 041277 570 VQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 570 l~~G~i~~~g~~~~l~~ 586 (1133)
|++|++++.|+++++.+
T Consensus 228 l~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 228 LADGAIVAHGAPADVLT 244 (272)
T ss_pred EECCeEEEecCHHHHcC
Confidence 99999999999998865
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-40 Score=364.58 Aligned_cols=227 Identities=24% Similarity=0.413 Sum_probs=185.1
Q ss_pred cEEEEEEEEEcCCC------CCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHH
Q 041277 360 EVEFKCVQFAYPSR------PESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLK 433 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~------~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~ 433 (1133)
-|+++||+++|+.. .+.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 48999999999632 123599999999999999999999999999999999999999999999999998765555
Q ss_pred HHhhhceEEecCCC--Cccc-cHHHHHhcCCC---CCC----HHHHHHHHHHhchH-HHHHhCCCcccccccCCCCCCCh
Q 041277 434 WLRSQMGLVSQEPA--LFAT-SIKENILFGKE---DAS----MEEVIEAAKASNAH-NFIRQLPQQYDTQVGERGVQMSG 502 (1133)
Q Consensus 434 ~~r~~i~~v~Q~~~--l~~~-ti~eni~~~~~---~~~----~~~~~~~~~~~~~~-~~i~~l~~g~~t~~~~~g~~LSg 502 (1133)
..+++++|+||++. +++. |+.+|+.++.. ... .+++.++++..++. +... ....+|||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~~LS~ 152 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHAS-----------YYPHMLAP 152 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHh-----------cCchhcCH
Confidence 56678999999985 4443 89999875311 111 23455556666652 2222 23358999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeec
Q 041277 503 GQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETG 579 (1133)
Q Consensus 503 Gqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 579 (1133)
|||||++||||++.+|++|||||||++||+.+.+.+.+.|.++. .++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 153 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 153 GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERG 232 (267)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999999874 38899999999999986 9999999999999999
Q ss_pred Ccchhcccc-chhhHHHHH
Q 041277 580 SHDELIQAE-SGLYTSLVR 597 (1133)
Q Consensus 580 ~~~~l~~~~-~~~~~~~~~ 597 (1133)
+++++...+ ...++.++.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~ 251 (267)
T PRK15112 233 STADVLASPLHELTKRLIA 251 (267)
T ss_pred CHHHHhcCCCCHHHHHHHH
Confidence 999987632 234455554
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-40 Score=365.15 Aligned_cols=219 Identities=29% Similarity=0.445 Sum_probs=184.9
Q ss_pred cccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCC-----CccEEEECCeecC----
Q 041277 358 LGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP-----LGGEIILDGVSID---- 428 (1133)
Q Consensus 358 ~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~-----~~G~i~~~g~~~~---- 428 (1133)
.+.|+++|++++|+++ ++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.++.
T Consensus 14 ~~~l~~~~l~~~~~~~---~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~ 90 (265)
T PRK14252 14 QQKSEVNKLNFYYGGY---QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90 (265)
T ss_pred CceEEEEEEEEEECCe---eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence 4569999999999743 499999999999999999999999999999999999875 7999999998774
Q ss_pred CCCHHHHhhhceEEecCCCCccccHHHHHhcCCC--CC-----CHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCC
Q 041277 429 KLQLKWLRSQMGLVSQEPALFATSIKENILFGKE--DA-----SMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMS 501 (1133)
Q Consensus 429 ~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~--~~-----~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LS 501 (1133)
..+...+++.++|++|++.+|..|++||+.++.. .. ..+++.++++.+++.+. +.+..+....+||
T Consensus 91 ~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LS 163 (265)
T PRK14252 91 EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDE-------VKDRLGDLAFNLS 163 (265)
T ss_pred ccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchh-------hhHHHhCCcccCC
Confidence 2334567888999999999998999999987531 11 12344455555544322 2233455667999
Q ss_pred hHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecC
Q 041277 502 GGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGS 580 (1133)
Q Consensus 502 gGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 580 (1133)
||||||++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||++++|++|++++.|+
T Consensus 164 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~ 243 (265)
T PRK14252 164 GGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGA 243 (265)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999988777899999999999865 99999999999999999
Q ss_pred cchhcc
Q 041277 581 HDELIQ 586 (1133)
Q Consensus 581 ~~~l~~ 586 (1133)
++++..
T Consensus 244 ~~~~~~ 249 (265)
T PRK14252 244 TDTIFI 249 (265)
T ss_pred HHHHHh
Confidence 998864
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=379.29 Aligned_cols=229 Identities=31% Similarity=0.460 Sum_probs=190.3
Q ss_pred ccEEEEEEEEEcCCC--------CCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCee--cC
Q 041277 359 GEVEFKCVQFAYPSR--------PESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVS--ID 428 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~--------~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~--~~ 428 (1133)
.-++++|+++.|..+ ....+++||||++++||++||||+||||||||.++|+|+.+|++|+|.++|.+ ++
T Consensus 279 ~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~ 358 (539)
T COG1123 279 PLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLT 358 (539)
T ss_pred ceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccc
Confidence 357899999999742 13468999999999999999999999999999999999999999999999987 22
Q ss_pred CCCHHHHhhhceEEecCCCC--c-cccHHHHHhcCCC----C---CCHHHHHHHHHHhchHH-HHHhCCCcccccccCCC
Q 041277 429 KLQLKWLRSQMGLVSQEPAL--F-ATSIKENILFGKE----D---ASMEEVIEAAKASNAHN-FIRQLPQQYDTQVGERG 497 (1133)
Q Consensus 429 ~~~~~~~r~~i~~v~Q~~~l--~-~~ti~eni~~~~~----~---~~~~~~~~~~~~~~~~~-~i~~l~~g~~t~~~~~g 497 (1133)
.-+...+|+++-+|+|||+- - ..||+++|.-... . ...+.+.+.++.+++.. ++.+ .+
T Consensus 359 ~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~r-----------yP 427 (539)
T COG1123 359 GGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDR-----------YP 427 (539)
T ss_pred cchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhc-----------Cc
Confidence 22345677899999999964 3 3599999874321 1 11223555566666554 3444 44
Q ss_pred CCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCe
Q 041277 498 VQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQ 574 (1133)
Q Consensus 498 ~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~ 574 (1133)
.+|||||||||||||||+.+|+++++|||||+||+.++..+.+.|+++.+ |.|.|+||||++.++. ||||+||++|+
T Consensus 428 ~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~ 507 (539)
T COG1123 428 HELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGR 507 (539)
T ss_pred hhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCe
Confidence 68999999999999999999999999999999999999999999998753 8999999999999998 99999999999
Q ss_pred EEeecCcchhccccchhhHHHHHh
Q 041277 575 VMETGSHDELIQAESGLYTSLVRL 598 (1133)
Q Consensus 575 i~~~g~~~~l~~~~~~~~~~~~~~ 598 (1133)
|+|.|+.+++.+.+...|.+....
T Consensus 508 iVE~G~~~~v~~~p~h~Ytr~L~~ 531 (539)
T COG1123 508 IVEEGPTEKVFENPQHPYTRKLLA 531 (539)
T ss_pred EEEeCCHHHHhcCCCChHHHHHHH
Confidence 999999999998778888876543
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=353.79 Aligned_cols=230 Identities=27% Similarity=0.453 Sum_probs=186.3
Q ss_pred EEEEEEEEEcCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccC-C----CccEEEECCeecCCCCHHH
Q 041277 361 VEFKCVQFAYPSRP-ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYA-P----LGGEIILDGVSIDKLQLKW 434 (1133)
Q Consensus 361 i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~-~----~~G~i~~~g~~~~~~~~~~ 434 (1133)
++++|++.+|.... ...+++||||++++||++||||.|||||||+.+.|+|+++ | .+|+|.++|.|+..++.+.
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 57899999997532 2468999999999999999999999999999999999998 4 5799999999999998775
Q ss_pred H---h-hhceEEecCCCC-cc--ccHH----HHHhcCCCC----CCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCC
Q 041277 435 L---R-SQMGLVSQEPAL-FA--TSIK----ENILFGKED----ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQ 499 (1133)
Q Consensus 435 ~---r-~~i~~v~Q~~~l-~~--~ti~----eni~~~~~~----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~ 499 (1133)
+ | +.|++|||||.- ++ .||. |-+...... ...+++.+.++.+++.+- +..+...+.+
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~--------~~~~~~YPhe 153 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDP--------ERRLKSYPHE 153 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCH--------HHHHhhCCcc
Confidence 4 3 469999999842 22 1444 444432111 113356666666666431 1122333469
Q ss_pred CChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEE
Q 041277 500 MSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVM 576 (1133)
Q Consensus 500 LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~ 576 (1133)
||||||||+.||-||+.+|++||.||||+|||..++++|.+.|+++. .|.|+|+||||+..+.. ||||+||..|+|+
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iV 233 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIV 233 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEE
Confidence 99999999999999999999999999999999999999999999876 48999999999999876 9999999999999
Q ss_pred eecCcchhccccchhhHHHHHh
Q 041277 577 ETGSHDELIQAESGLYTSLVRL 598 (1133)
Q Consensus 577 ~~g~~~~l~~~~~~~~~~~~~~ 598 (1133)
|.|+.+++.+++...|.+..-.
T Consensus 234 E~g~~~~i~~~P~HPYT~~Ll~ 255 (316)
T COG0444 234 EEGPVEEIFKNPKHPYTRGLLN 255 (316)
T ss_pred EeCCHHHHhcCCCChHHHHHHH
Confidence 9999999998888888775543
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=362.48 Aligned_cols=212 Identities=23% Similarity=0.316 Sum_probs=173.6
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhcc--CCCccEEEECCeecCCCCHHHH-hh
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFY--APLGGEIILDGVSIDKLQLKWL-RS 437 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~--~~~~G~i~~~g~~~~~~~~~~~-r~ 437 (1133)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|.++...+.... +.
T Consensus 1 l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 1 LKIKDLHVSVED---KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred CeEeeEEEEECC---EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence 478999999974 35899999999999999999999999999999999994 7999999999999988776554 44
Q ss_pred hceEEecCCCCccc-cHHHHHhcCCCC---------CCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCC-CCCh
Q 041277 438 QMGLVSQEPALFAT-SIKENILFGKED---------ASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGV-QMSG 502 (1133)
Q Consensus 438 ~i~~v~Q~~~l~~~-ti~eni~~~~~~---------~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~-~LSg 502 (1133)
.++|++|++.+|++ |++||+.+.... .+. +++.++++..++.+ . ....... +|||
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~---~~~~~~~~~LS~ 147 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDE-------E---FLNRSVNEGFSG 147 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCch-------h---hcccccccCcCH
Confidence 59999999999876 899999764210 011 12233333333321 1 1122233 5999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc--CCEEEEEeCCeEEeec
Q 041277 503 GQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN--ADVIAVVQDGQVMETG 579 (1133)
Q Consensus 503 Gqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~--~d~i~~l~~G~i~~~g 579 (1133)
|||||++|||||+.+|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 148 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g 227 (243)
T TIGR01978 148 GEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSG 227 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEec
Confidence 99999999999999999999999999999999999999999875 47999999999999875 7999999999999999
Q ss_pred Ccchhc
Q 041277 580 SHDELI 585 (1133)
Q Consensus 580 ~~~~l~ 585 (1133)
+++++.
T Consensus 228 ~~~~~~ 233 (243)
T TIGR01978 228 DVELAK 233 (243)
T ss_pred CHHHhc
Confidence 987653
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-40 Score=363.57 Aligned_cols=219 Identities=27% Similarity=0.460 Sum_probs=184.2
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCC-----ccEEEECCeecCC--CC
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPL-----GGEIILDGVSIDK--LQ 431 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~-----~G~i~~~g~~~~~--~~ 431 (1133)
+.|+++|++++|++. .+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .+
T Consensus 6 ~~l~~~nl~~~~~~~---~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~ 82 (261)
T PRK14258 6 PAIKVNNLSFYYDTQ---KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVN 82 (261)
T ss_pred ceEEEeeEEEEeCCe---eEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccc
Confidence 368999999999643 4899999999999999999999999999999999999985 8999999999853 34
Q ss_pred HHHHhhhceEEecCCCCccccHHHHHhcCCC--CC-C----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHH
Q 041277 432 LKWLRSQMGLVSQEPALFATSIKENILFGKE--DA-S----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQ 504 (1133)
Q Consensus 432 ~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~--~~-~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 504 (1133)
...+|+.++|++|++.+|+.|++||+.++.. .. + .+++.++++..++.+++. ...++.+.+|||||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq 155 (261)
T PRK14258 83 LNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIK-------HKIHKSALDLSGGQ 155 (261)
T ss_pred hHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhh-------hHhcCCcccCCHHH
Confidence 4567888999999999999999999986421 11 1 123444555555443332 22345667999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeC-----CeEE
Q 041277 505 KQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQD-----GQVM 576 (1133)
Q Consensus 505 kqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~-----G~i~ 576 (1133)
|||++||||++++|+++||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+.. ||+|++|++ |+++
T Consensus 156 ~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~ 235 (261)
T PRK14258 156 QQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLV 235 (261)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEE
Confidence 999999999999999999999999999999999999998863 48999999999999875 999999999 9999
Q ss_pred eecCcchhccc
Q 041277 577 ETGSHDELIQA 587 (1133)
Q Consensus 577 ~~g~~~~l~~~ 587 (1133)
+.|+++++.+.
T Consensus 236 ~~~~~~~~~~~ 246 (261)
T PRK14258 236 EFGLTKKIFNS 246 (261)
T ss_pred EeCCHHHHHhC
Confidence 99999998753
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-40 Score=362.69 Aligned_cols=226 Identities=27% Similarity=0.415 Sum_probs=182.9
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCee-----cCCCCHHH
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVS-----IDKLQLKW 434 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~-----~~~~~~~~ 434 (1133)
-++++|++++|+++ ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +.+.+...
T Consensus 6 ~l~~~~l~~~~~~~---~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 6 LLSVRGLTKLYGPR---KGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred eEEEeeeEEEcCCc---eeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 48999999999743 48999999999999999999999999999999999999999999999998 77665543
Q ss_pred ----HhhhceEEecCCC--Ccc-ccHHHHHhcCC---CCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHH
Q 041277 435 ----LRSQMGLVSQEPA--LFA-TSIKENILFGK---EDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQ 504 (1133)
Q Consensus 435 ----~r~~i~~v~Q~~~--l~~-~ti~eni~~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 504 (1133)
.++.++|++|++. ++. .|+.+|+.+.. ......+..+ .+.++++.++-+ ++.....+.+|||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~-~~~~~~~~~~LS~Gq 156 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRA-----TAGDWLERVEID-AARIDDLPTTFSGGM 156 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHH-----HHHHHHHHcCCC-hhHHhCCCccCCHHH
Confidence 3557999999984 343 48899986421 1111122211 123455555321 134566778999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCc
Q 041277 505 KQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSH 581 (1133)
Q Consensus 505 kqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~ 581 (1133)
|||++||||++.+|++|||||||++||+.+++.+.+.|+++.+ |.|+|++||+++.+.. ||+|++|++|++++.|++
T Consensus 157 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~ 236 (258)
T PRK11701 157 QQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLT 236 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999988643 7899999999999975 999999999999999999
Q ss_pred chhccccchhhHH
Q 041277 582 DELIQAESGLYTS 594 (1133)
Q Consensus 582 ~~l~~~~~~~~~~ 594 (1133)
+++..++...|.+
T Consensus 237 ~~~~~~~~~~~~~ 249 (258)
T PRK11701 237 DQVLDDPQHPYTQ 249 (258)
T ss_pred HHHhcCCCCHHHH
Confidence 9987543333443
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-40 Score=362.75 Aligned_cols=219 Identities=32% Similarity=0.466 Sum_probs=184.2
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCC-----CccEEEECCeecCC--CC
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP-----LGGEIILDGVSIDK--LQ 431 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~-----~~G~i~~~g~~~~~--~~ 431 (1133)
..|+++|++++|++. .+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.+ .+
T Consensus 19 ~~l~~~nl~~~~~~~---~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~ 95 (274)
T PRK14265 19 SVFEVEGVKVFYGGF---LALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95 (274)
T ss_pred ceEEEeeEEEEeCCe---EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccch
Confidence 369999999999743 489999999999999999999999999999999999863 69999999999864 23
Q ss_pred HHHHhhhceEEecCCCCccccHHHHHhcCCCCC-----CHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHH
Q 041277 432 LKWLRSQMGLVSQEPALFATSIKENILFGKEDA-----SMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQ 506 (1133)
Q Consensus 432 ~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~-----~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 506 (1133)
...+|++|+|++|++.+|+.|++||+.++.... ..+++.++++.+++.+.+. ......+.+|||||||
T Consensus 96 ~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgGq~q 168 (274)
T PRK14265 96 SVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVK-------DKLKEKGTALSGGQQQ 168 (274)
T ss_pred hHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhH-------HHhcCCcccCCHHHHH
Confidence 446678999999999999889999998753211 1223444555555543332 1234456789999999
Q ss_pred HHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEe---------CCeEE
Q 041277 507 RIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQ---------DGQVM 576 (1133)
Q Consensus 507 ri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~---------~G~i~ 576 (1133)
|++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|+ +|+++
T Consensus 169 rv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~ 248 (274)
T PRK14265 169 RLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLV 248 (274)
T ss_pred HHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEE
Confidence 999999999999999999999999999999999999988778999999999999865 99999998 89999
Q ss_pred eecCcchhccc
Q 041277 577 ETGSHDELIQA 587 (1133)
Q Consensus 577 ~~g~~~~l~~~ 587 (1133)
+.|+++++...
T Consensus 249 ~~g~~~~~~~~ 259 (274)
T PRK14265 249 EFSPTEQMFGS 259 (274)
T ss_pred EeCCHHHHHhC
Confidence 99999998753
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=373.21 Aligned_cols=198 Identities=23% Similarity=0.400 Sum_probs=169.9
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccc-cHHH
Q 041277 377 IIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFAT-SIKE 455 (1133)
Q Consensus 377 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-ti~e 455 (1133)
++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ....+|+++||+||++.++.. |++|
T Consensus 7 ~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~e 85 (302)
T TIGR01188 7 KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDEDLTGRE 85 (302)
T ss_pred eEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCCCCCcHHH
Confidence 58999999999999999999999999999999999999999999999999875 345678889999999999876 9999
Q ss_pred HHhcCCC--CCC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccC
Q 041277 456 NILFGKE--DAS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSA 529 (1133)
Q Consensus 456 ni~~~~~--~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~ 529 (1133)
|+.+... ..+ .+++.++++..++.+. ......+||||||||++|||||+++|++|||||||++
T Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 86 NLEMMGRLYGLPKDEAEERAEELLELFELGEA-----------ADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCChhH-----------hCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 9987421 111 1234444555444332 2334468999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 530 LDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 530 lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 155 LD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 155 LDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 99999999999999875 58999999999999876 99999999999999999998865
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-40 Score=352.00 Aligned_cols=202 Identities=33% Similarity=0.545 Sum_probs=175.0
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
++++|++++|+. .++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+ .+++.++
T Consensus 1 ~~~~~l~~~~~~-----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~ 73 (213)
T TIGR01277 1 LALDKVRYEYEH-----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVS 73 (213)
T ss_pred CeEEeeeEEeCC-----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceE
Confidence 368999999962 468999999999999999999999999999999999999999999999987543 3567899
Q ss_pred EEecCCCCccc-cHHHHHhcCC-CC-----CCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHH
Q 041277 441 LVSQEPALFAT-SIKENILFGK-ED-----ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARA 513 (1133)
Q Consensus 441 ~v~Q~~~l~~~-ti~eni~~~~-~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa 513 (1133)
||+|+|.+|.. |++||+.++. +. ...+++.++++..++.+...+.| .+||||||||++||||
T Consensus 74 ~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~lara 142 (213)
T TIGR01277 74 MLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP-----------EQLSGGQRQRVALARC 142 (213)
T ss_pred EEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCc-----------ccCCHHHHHHHHHHHH
Confidence 99999999875 9999998642 11 12345666777777766665555 4899999999999999
Q ss_pred HhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecC
Q 041277 514 IIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGS 580 (1133)
Q Consensus 514 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 580 (1133)
++.+|+++||||||++||+.+++.+.+.|++.. .++|+|++||+++.+.. ||++++|++|++++.|.
T Consensus 143 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 143 LVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 999999999999999999999999999999875 37899999999998865 99999999999998874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=319.44 Aligned_cols=215 Identities=28% Similarity=0.457 Sum_probs=182.8
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCC---------
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKL--------- 430 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~--------- 430 (1133)
.++++|++++|+.. .||++|||+.++|+.+.|+|.|||||||+++||.=+-.|+.|.|.++|..++-.
T Consensus 6 ~l~v~dlHK~~G~~---eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ 82 (256)
T COG4598 6 ALEVEDLHKRYGEH---EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKP 82 (256)
T ss_pred ceehhHHHhhcccc---hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeee
Confidence 58899999999854 399999999999999999999999999999999999999999999999987522
Q ss_pred -C---HHHHhhhceEEecCCCCcc-ccHHHHHhcCCC---CCCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCC
Q 041277 431 -Q---LKWLRSQMGLVSQEPALFA-TSIKENILFGKE---DASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGV 498 (1133)
Q Consensus 431 -~---~~~~r~~i~~v~Q~~~l~~-~ti~eni~~~~~---~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~ 498 (1133)
+ ...+|.+.|+|+|+..|++ .|+.||+.-+.- ..+. ++.+..+.++++.+--+.. +.
T Consensus 83 ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~Y-----------P~ 151 (256)
T COG4598 83 ADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAY-----------PA 151 (256)
T ss_pred CCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcC-----------cc
Confidence 2 3457889999999999986 599999874311 1122 2233344555555544444 46
Q ss_pred CCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEE
Q 041277 499 QMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVM 576 (1133)
Q Consensus 499 ~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~ 576 (1133)
.|||||+||++|||||..+|+++++|||||||||+---++.+.++++. +|+|.++|||.+.+.++ +.++++|++|+|-
T Consensus 152 ~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iE 231 (256)
T COG4598 152 HLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIE 231 (256)
T ss_pred ccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceec
Confidence 899999999999999999999999999999999999999999998875 69999999999999998 8999999999999
Q ss_pred eecCcchhcccc
Q 041277 577 ETGSHDELIQAE 588 (1133)
Q Consensus 577 ~~g~~~~l~~~~ 588 (1133)
|+|+|+++..++
T Consensus 232 E~G~P~qvf~nP 243 (256)
T COG4598 232 EEGPPEQVFGNP 243 (256)
T ss_pred ccCChHHHhcCC
Confidence 999999998654
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=361.50 Aligned_cols=226 Identities=27% Similarity=0.443 Sum_probs=185.4
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECC------eecCCCCH
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDG------VSIDKLQL 432 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g------~~~~~~~~ 432 (1133)
..++++|++++|+++ ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| +++.+.+.
T Consensus 9 ~~i~~~~~~~~~~~~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~ 85 (257)
T PRK14246 9 DVFNISRLYLYINDK---AILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDA 85 (257)
T ss_pred hheeeeeEEEecCCc---eeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCH
Confidence 358999999999753 489999999999999999999999999999999999999997666655 66666666
Q ss_pred HHHhhhceEEecCCCCccc-cHHHHHhcCCC--CC-CHH----HHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHH
Q 041277 433 KWLRSQMGLVSQEPALFAT-SIKENILFGKE--DA-SME----EVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQ 504 (1133)
Q Consensus 433 ~~~r~~i~~v~Q~~~l~~~-ti~eni~~~~~--~~-~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 504 (1133)
..+|++++|++|++.+|.+ |++||+.++.. .. ..+ ++.++++..++++++ .....+.+..|||||
T Consensus 86 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~LS~G~ 158 (257)
T PRK14246 86 IKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEV-------YDRLNSPASQLSGGQ 158 (257)
T ss_pred HHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccc-------hhhhcCCcccCCHHH
Confidence 7788899999999999875 99999997532 11 122 233444444443211 122344567899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcch
Q 041277 505 KQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDE 583 (1133)
Q Consensus 505 kqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 583 (1133)
|||++||||++.+|+++||||||++||+.+++.+.+.|.++.+++|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 159 ~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~ 238 (257)
T PRK14246 159 QQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNE 238 (257)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999988777999999999999854 99999999999999999999
Q ss_pred hccccchhhHH
Q 041277 584 LIQAESGLYTS 594 (1133)
Q Consensus 584 l~~~~~~~~~~ 594 (1133)
+.+.+...|.+
T Consensus 239 ~~~~~~~~~~~ 249 (257)
T PRK14246 239 IFTSPKNELTE 249 (257)
T ss_pred HHhCCCcHHHH
Confidence 87644433443
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-40 Score=361.37 Aligned_cols=217 Identities=30% Similarity=0.434 Sum_probs=180.4
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccC--C---CccEEEECCeecCC--CCH
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYA--P---LGGEIILDGVSIDK--LQL 432 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~--~---~~G~i~~~g~~~~~--~~~ 432 (1133)
.|+++||+++|+. +++|+|+||++++||+++|+||||||||||+++|+|+++ | ++|+|.++|.++.. .+.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 5 IITSSDVHLFYGK---FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred eEEEEeEEEEECC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 4899999999974 358999999999999999999999999999999999975 5 59999999999864 234
Q ss_pred HHHhhhceEEecCCCCccccHHHHHhcCCC--CC-CH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHH
Q 041277 433 KWLRSQMGLVSQEPALFATSIKENILFGKE--DA-SM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQK 505 (1133)
Q Consensus 433 ~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~--~~-~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 505 (1133)
..+++.++|++|++.+|+.|++||+.++.. .. .. +++.++++.+++.+. ..........+||||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------i~~~~~~~~~~LS~Gq~ 154 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDE-------VKDHLHESALSLSGGQQ 154 (252)
T ss_pred HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccc-------hhhHHhcCcccCCHHHH
Confidence 566788999999999998999999987521 11 11 223333444433221 12233455678999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchh
Q 041277 506 QRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584 (1133)
Q Consensus 506 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 584 (1133)
||++||||++.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+..++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14255 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988767899999999999865 999999999999999998888
Q ss_pred cc
Q 041277 585 IQ 586 (1133)
Q Consensus 585 ~~ 586 (1133)
..
T Consensus 235 ~~ 236 (252)
T PRK14255 235 FL 236 (252)
T ss_pred hc
Confidence 65
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-40 Score=355.38 Aligned_cols=209 Identities=29% Similarity=0.524 Sum_probs=180.1
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
|+++|++++|++ .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 1 l~~~~l~~~~~~----~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~ 74 (235)
T cd03299 1 LKVENLSKDWKE----FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDIS 74 (235)
T ss_pred CeeEeEEEEeCC----ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEE
Confidence 468999999963 27999999999999999999999999999999999999999999999999876554 267899
Q ss_pred EEecCCCCcc-ccHHHHHhcCCCC--CC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHH
Q 041277 441 LVSQEPALFA-TSIKENILFGKED--AS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARA 513 (1133)
Q Consensus 441 ~v~Q~~~l~~-~ti~eni~~~~~~--~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa 513 (1133)
|++|++.+|. .|++||+.++... .+ .+++.++++..++.+++.+. ..+||||||||++||||
T Consensus 75 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~lara 143 (235)
T cd03299 75 YVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRK-----------PETLSGGEQQRVAIARA 143 (235)
T ss_pred EEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcC-----------cccCCHHHHHHHHHHHH
Confidence 9999999985 6999999875321 11 23345556666665554443 35899999999999999
Q ss_pred HhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 514 IIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 514 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
++++|++++|||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 144 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 219 (235)
T cd03299 144 LVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFK 219 (235)
T ss_pred HHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHh
Confidence 9999999999999999999999999999998643 8999999999999875 99999999999999999988865
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=367.10 Aligned_cols=218 Identities=27% Similarity=0.477 Sum_probs=183.7
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccC-----CCccEEEECCeecCCC--C
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYA-----PLGGEIILDGVSIDKL--Q 431 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~-----~~~G~i~~~g~~~~~~--~ 431 (1133)
..|+++|++++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++... +
T Consensus 44 ~~l~i~nl~~~~~~~---~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 44 AKLSVEDLDVYYGDD---HALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred ceEEEEEEEEEeCCe---eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 358999999999753 48999999999999999999999999999999999986 6899999999998643 3
Q ss_pred HHHHhhhceEEecCCCCccccHHHHHhcCCCCC-------------------CHHHHHHHHHHhchHHHHHhCCCccccc
Q 041277 432 LKWLRSQMGLVSQEPALFATSIKENILFGKEDA-------------------SMEEVIEAAKASNAHNFIRQLPQQYDTQ 492 (1133)
Q Consensus 432 ~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~-------------------~~~~~~~~~~~~~~~~~i~~l~~g~~t~ 492 (1133)
...+|++++|++|++.+|+.|++||+.++.... ..+++.++++.+++ ++++++.
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~ 193 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAAL-------WDEVNDR 193 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCC-------chhhhHH
Confidence 556788999999999999999999999763210 01223333333333 2233445
Q ss_pred ccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEE-EEE
Q 041277 493 VGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVI-AVV 570 (1133)
Q Consensus 493 ~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i-~~l 570 (1133)
....+.+||||||||++|||||+++|+||||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||++ ++|
T Consensus 194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l 273 (305)
T PRK14264 194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFL 273 (305)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEe
Confidence 56677899999999999999999999999999999999999999999999988777999999999999865 9997 578
Q ss_pred eCCeEEeecCcchhcc
Q 041277 571 QDGQVMETGSHDELIQ 586 (1133)
Q Consensus 571 ~~G~i~~~g~~~~l~~ 586 (1133)
++|++++.|+++++.+
T Consensus 274 ~~G~i~~~g~~~~~~~ 289 (305)
T PRK14264 274 TGGELVEYDDTDKIFE 289 (305)
T ss_pred cCCEEEEeCCHHHHHh
Confidence 9999999999998865
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-40 Score=359.27 Aligned_cols=203 Identities=28% Similarity=0.434 Sum_probs=171.2
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... +..++
T Consensus 2 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~ 73 (255)
T PRK11248 2 LQISHLYADYGG---KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERG 73 (255)
T ss_pred EEEEEEEEEeCC---eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEE
Confidence 689999999974 3489999999999999999999999999999999999999999999999988642 23589
Q ss_pred EEecCCCCcc-ccHHHHHhcCCC--CCCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHH
Q 041277 441 LVSQEPALFA-TSIKENILFGKE--DASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARA 513 (1133)
Q Consensus 441 ~v~Q~~~l~~-~ti~eni~~~~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa 513 (1133)
|++|++.+|+ .|++||+.++.. .... +++.+.++..++.+.. ...+.+||||||||++||||
T Consensus 74 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGq~qrl~lara 142 (255)
T PRK11248 74 VVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAE-----------KRYIWQLSGGQRQRVGIARA 142 (255)
T ss_pred EEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHh-----------hCChhhCCHHHHHHHHHHHH
Confidence 9999999887 599999987531 1111 2344445555444333 33456899999999999999
Q ss_pred HhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEe--CCeEEeecCcc
Q 041277 514 IIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQ--DGQVMETGSHD 582 (1133)
Q Consensus 514 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~--~G~i~~~g~~~ 582 (1133)
|+.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+.. ||+|++|+ +|++++.++.+
T Consensus 143 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 143 LAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 999999999999999999999999999999863 48999999999999865 99999998 59999887653
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-40 Score=376.42 Aligned_cols=209 Identities=30% Similarity=0.462 Sum_probs=176.4
Q ss_pred EEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCC----HHHHhhhce
Q 041277 365 CVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQ----LKWLRSQMG 440 (1133)
Q Consensus 365 ~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~----~~~~r~~i~ 440 (1133)
|++++|++. .+ |+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ....+++++
T Consensus 4 ~l~~~~~~~----~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~ 78 (354)
T TIGR02142 4 RFSKRLGDF----SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG 78 (354)
T ss_pred EEEEEECCE----EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeE
Confidence 789999642 24 999999999999999999999999999999999999999999999986532 235677899
Q ss_pred EEecCCCCccc-cHHHHHhcCCCCCCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHh
Q 041277 441 LVSQEPALFAT-SIKENILFGKEDASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAII 515 (1133)
Q Consensus 441 ~v~Q~~~l~~~-ti~eni~~~~~~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~ 515 (1133)
|++|++.+|.. |++||+.++...... +++.+.++..++.+. ......+||||||||++|||||+
T Consensus 79 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LSgGqkqRvalAraL~ 147 (354)
T TIGR02142 79 YVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHL-----------LGRLPGRLSGGEKQRVAIGRALL 147 (354)
T ss_pred EEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhH-----------hcCChhhCCHHHHHHHHHHHHHH
Confidence 99999999975 999999987432211 224444555544443 34445689999999999999999
Q ss_pred hCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhccccc
Q 041277 516 KAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQAES 589 (1133)
Q Consensus 516 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 589 (1133)
.+|++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++...+.
T Consensus 148 ~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 224 (354)
T TIGR02142 148 SSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPD 224 (354)
T ss_pred cCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCcC
Confidence 99999999999999999999999999998753 7999999999999865 99999999999999999999876433
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-40 Score=353.72 Aligned_cols=214 Identities=23% Similarity=0.377 Sum_probs=169.7
Q ss_pred EEEEEEEEEcCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccC---CCccEEEECCeecCCCCHHHHh
Q 041277 361 VEFKCVQFAYPSRP-ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYA---PLGGEIILDGVSIDKLQLKWLR 436 (1133)
Q Consensus 361 i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~---~~~G~i~~~g~~~~~~~~~~~r 436 (1133)
+.++||+++|++.. .+++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 57999999997542 3569999999999999999999999999999999999999 99999999999875 24567
Q ss_pred hhceEEecCCCCccc-cHHHHHhcCCCCCCHHHHHHHHHHhchHH-HHHhCCCcccccccCCCCCCChHHHHHHHHHHHH
Q 041277 437 SQMGLVSQEPALFAT-SIKENILFGKEDASMEEVIEAAKASNAHN-FIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAI 514 (1133)
Q Consensus 437 ~~i~~v~Q~~~l~~~-ti~eni~~~~~~~~~~~~~~~~~~~~~~~-~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal 514 (1133)
++++|++|++.+|+. |++||+.++..........+..+....++ .++.+ ++.........+||||||||++||||+
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral 158 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDL--ALTRIGGNLVKGISGGERRRVSIAVQL 158 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhh--cchhhhcccccCcCHHHHHHHHHHHHH
Confidence 889999999999987 99999987521100000000000000111 22221 222233445678999999999999999
Q ss_pred hhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCc-chhh-cCCEEEEEeCCeEEeec
Q 041277 515 IKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRL-STIR-NADVIAVVQDGQVMETG 579 (1133)
Q Consensus 515 ~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~-~~~~-~~d~i~~l~~G~i~~~g 579 (1133)
+++|+++||||||++||+.++..+.+.+.+.. +++|+|++||++ +.+. .||++++|++|++++.|
T Consensus 159 ~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 159 LWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999998864 478999999998 4554 59999999999999875
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=351.41 Aligned_cols=205 Identities=27% Similarity=0.443 Sum_probs=176.5
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ++.++
T Consensus 1 l~l~~v~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~ 73 (223)
T TIGR03740 1 LETKNLSKRFGK---QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIG 73 (223)
T ss_pred CEEEeEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEE
Confidence 478999999974 35899999999999999999999999999999999999999999999999875322 24799
Q ss_pred EEecCCCCcc-ccHHHHHhcCCC--CCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhC
Q 041277 441 LVSQEPALFA-TSIKENILFGKE--DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKA 517 (1133)
Q Consensus 441 ~v~Q~~~l~~-~ti~eni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 517 (1133)
|+||++.+|. .|++||+.++.. ....+++.++++..++.+..+. ...+||||||||++||||++.+
T Consensus 74 ~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~~rv~laral~~~ 142 (223)
T TIGR03740 74 SLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKK-----------KAKQFSLGMKQRLGIAIALLNH 142 (223)
T ss_pred EEcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhh-----------hHhhCCHHHHHHHHHHHHHhcC
Confidence 9999998886 599999986421 2235566667777766654443 2358999999999999999999
Q ss_pred CCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcch
Q 041277 518 PRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDE 583 (1133)
Q Consensus 518 ~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 583 (1133)
|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 143 p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 143 PKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred CCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 99999999999999999999999999875 48899999999999865 99999999999999998765
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=320.62 Aligned_cols=212 Identities=25% Similarity=0.444 Sum_probs=185.4
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
|+.+|++++-.++ .+|+++||++++||.+||+||||+|||||++.|+|.+.|++|++.++|.++.+++..++.++-+
T Consensus 2 i~a~nls~~~~Gr---~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~ra 78 (259)
T COG4559 2 IRAENLSYSLAGR---RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRA 78 (259)
T ss_pred eeeeeeEEEeecc---eeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhh
Confidence 6789999988654 3899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCC-ccccHHHHHhcCCCCC------CHHH--HHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHH
Q 041277 441 LVSQEPAL-FATSIKENILFGKEDA------SMEE--VIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIA 511 (1133)
Q Consensus 441 ~v~Q~~~l-~~~ti~eni~~~~~~~------~~~~--~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iA 511 (1133)
+.||+..+ |+-|++|-+.+|.-.. .+++ ..+++..+++..+-.+. -..||||||||+.+|
T Consensus 79 VlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~-----------y~~LSGGEqQRVqlA 147 (259)
T COG4559 79 VLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRD-----------YRTLSGGEQQRVQLA 147 (259)
T ss_pred hcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccc-----------hhhcCchHHHHHHHH
Confidence 99999887 8999999999986311 1222 45566666665554332 247999999999999
Q ss_pred HHHhh------CCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhh-cCCEEEEEeCCeEEeecCcch
Q 041277 512 RAIIK------APRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIR-NADVIAVVQDGQVMETGSHDE 583 (1133)
Q Consensus 512 Ral~~------~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~ 583 (1133)
|.|.+ ++++|+||||||+||...++.+++..+++. +|..|+.|-||++... .||||++|++||++..|++++
T Consensus 148 RvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~ 227 (259)
T COG4559 148 RVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQD 227 (259)
T ss_pred HHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHH
Confidence 99986 446899999999999999999999998875 5889999999999865 599999999999999999999
Q ss_pred hcc
Q 041277 584 LIQ 586 (1133)
Q Consensus 584 l~~ 586 (1133)
.+.
T Consensus 228 vlt 230 (259)
T COG4559 228 VLT 230 (259)
T ss_pred hcC
Confidence 987
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-40 Score=311.21 Aligned_cols=191 Identities=30% Similarity=0.538 Sum_probs=167.0
Q ss_pred CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHH
Q 041277 375 ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIK 454 (1133)
Q Consensus 375 ~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~ 454 (1133)
+.++|+++||++.+||+++|.||||||||||++.++-+.+|++|++++.|++++.++++.+|++|+||.|.|.||.+||+
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVe 94 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVE 94 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchh
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCC----CCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCC
Q 041277 455 ENILFGKE----DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSAL 530 (1133)
Q Consensus 455 eni~~~~~----~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~l 530 (1133)
||+.|... ..+.......++.+++ .++.+..+..+||||||||+||+|-|.--|+||+||||||||
T Consensus 95 DNlifP~~~r~rr~dr~aa~~llar~~l----------~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsAL 164 (223)
T COG4619 95 DNLIFPWQIRNRRPDRAAALDLLARFAL----------PDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSAL 164 (223)
T ss_pred hccccchHHhccCCChHHHHHHHHHcCC----------chhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhc
Confidence 99998632 1122222222333322 234556667899999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHh--CCCeEEEEecCcch-hhcCCEEEEEeCCeE
Q 041277 531 DSESERVVQEALDKAV--VGRTTIIIAHRLST-IRNADVIAVVQDGQV 575 (1133)
Q Consensus 531 D~~~~~~i~~~l~~~~--~~~t~i~itH~~~~-~~~~d~i~~l~~G~i 575 (1133)
|+.+.+.|.+.|.++. ++..++.|||+.+. ++++|+++-+..|++
T Consensus 165 D~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 165 DESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHA 212 (223)
T ss_pred ChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcc
Confidence 9999999999998874 57899999999987 788999999999986
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=348.29 Aligned_cols=204 Identities=31% Similarity=0.456 Sum_probs=172.6
Q ss_pred EEEEEEEEEcCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHH---HHh
Q 041277 361 VEFKCVQFAYPSRP-ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLK---WLR 436 (1133)
Q Consensus 361 i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~---~~r 436 (1133)
++++|+++.|++.. ...+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. ..+
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 68999999996421 24589999999999999999999999999999999999999999999999999776543 467
Q ss_pred hhceEEecCCCCcc-ccHHHHHhcCCC---CCCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHH
Q 041277 437 SQMGLVSQEPALFA-TSIKENILFGKE---DASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRI 508 (1133)
Q Consensus 437 ~~i~~v~Q~~~l~~-~ti~eni~~~~~---~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 508 (1133)
+.++|++|++.+|. .|+.||+.++.. ..+. +++.++++..++.+++.+. +.+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~lS~G~~qrv 150 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYY-----------PHNLSGGQKQRV 150 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcC-----------hhhCCHHHHHHH
Confidence 88999999999987 599999987532 1222 2344455555554444443 458999999999
Q ss_pred HHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhcCCEEEEEeCCeE
Q 041277 509 AIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRNADVIAVVQDGQV 575 (1133)
Q Consensus 509 ~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~G~i 575 (1133)
+||||++.+|+++||||||++||+++++.+.+.|+++. +++|+|++||+++....||+|++|++|++
T Consensus 151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 99999999999999999999999999999999998875 38999999999997767999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=357.91 Aligned_cols=228 Identities=28% Similarity=0.431 Sum_probs=185.1
Q ss_pred EEEEEEEEEcCCC------CCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCH--
Q 041277 361 VEFKCVQFAYPSR------PESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQL-- 432 (1133)
Q Consensus 361 i~~~~v~~~y~~~------~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~-- 432 (1133)
|+++||+|+|+.. .++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.
T Consensus 4 l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~ 83 (268)
T PRK10419 4 LNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQ 83 (268)
T ss_pred EEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhH
Confidence 7899999999731 02469999999999999999999999999999999999999999999999999887654
Q ss_pred -HHHhhhceEEecCCC--Cc-cccHHHHHhcCCC---CCCHHHHHHHHHHhchHHHHHhCCCcccc-cccCCCCCCChHH
Q 041277 433 -KWLRSQMGLVSQEPA--LF-ATSIKENILFGKE---DASMEEVIEAAKASNAHNFIRQLPQQYDT-QVGERGVQMSGGQ 504 (1133)
Q Consensus 433 -~~~r~~i~~v~Q~~~--l~-~~ti~eni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~~~~~g~~LSgGq 504 (1133)
..+++.++|++|++. ++ ..|++||+.+... ....++ ....+++.++.+ |+++ .....+.+|||||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~-----~~~~~~~~l~~~--gl~~~~~~~~~~~LS~Ge 156 (268)
T PRK10419 84 RKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAE-----RLARASEMLRAV--DLDDSVLDKRPPQLSGGQ 156 (268)
T ss_pred HHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHH-----HHHHHHHHHHHc--CCChhHhhCCCccCChHH
Confidence 346788999999984 44 3599999865311 111111 111223444443 4542 4456678999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCc
Q 041277 505 KQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSH 581 (1133)
Q Consensus 505 kqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~ 581 (1133)
|||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 157 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~ 236 (268)
T PRK10419 157 LQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPV 236 (268)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCCh
Confidence 9999999999999999999999999999999999999988753 7899999999999975 999999999999999999
Q ss_pred chhccccchhhHHHH
Q 041277 582 DELIQAESGLYTSLV 596 (1133)
Q Consensus 582 ~~l~~~~~~~~~~~~ 596 (1133)
+++.. .++.|...+
T Consensus 237 ~~~~~-~~~~~~~~~ 250 (268)
T PRK10419 237 GDKLT-FSSPAGRVL 250 (268)
T ss_pred hhccC-CCCHHHHHH
Confidence 99886 345454433
|
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=332.69 Aligned_cols=171 Identities=56% Similarity=0.896 Sum_probs=160.3
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
++++|++++|+++ ...+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++++++
T Consensus 1 l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (171)
T cd03228 1 IEFKNVSFSYPGR-PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIA 79 (171)
T ss_pred CEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEE
Confidence 4789999999753 135899999999999999999999999999999999999999999999999998887777888999
Q ss_pred EEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCE
Q 041277 441 LVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRI 520 (1133)
Q Consensus 441 ~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~i 520 (1133)
|++|++.+|+.|++||+ ||||||||++||||++.+|++
T Consensus 80 ~~~~~~~~~~~t~~e~l------------------------------------------LS~G~~~rl~la~al~~~p~l 117 (171)
T cd03228 80 YVPQDPFLFSGTIRENI------------------------------------------LSGGQRQRIAIARALLRDPPI 117 (171)
T ss_pred EEcCCchhccchHHHHh------------------------------------------hCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999997 999999999999999999999
Q ss_pred EEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCe
Q 041277 521 LLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQ 574 (1133)
Q Consensus 521 lllDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~ 574 (1133)
+||||||++||+.+.+.+.+.++++.+++|+|++||+++.+..||++++|++|+
T Consensus 118 lllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 118 LILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 999999999999999999999998877899999999999988899999999985
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=335.59 Aligned_cols=172 Identities=42% Similarity=0.661 Sum_probs=158.5
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCC--HHHHhhh
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQ--LKWLRSQ 438 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~--~~~~r~~ 438 (1133)
|+++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+ ...+++.
T Consensus 1 i~~~~l~~~~~~---~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (178)
T cd03229 1 LELKNVSKRYGQ---KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRR 77 (178)
T ss_pred CEEEEEEEEECC---eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhc
Confidence 478999999974 34899999999999999999999999999999999999999999999999998775 5567889
Q ss_pred ceEEecCCCCccc-cHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhC
Q 041277 439 MGLVSQEPALFAT-SIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKA 517 (1133)
Q Consensus 439 i~~v~Q~~~l~~~-ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 517 (1133)
++|++|+|.+|.. |++||+.+. ||||||||++||||++++
T Consensus 78 i~~~~q~~~~~~~~t~~~~l~~~---------------------------------------lS~G~~qr~~la~al~~~ 118 (178)
T cd03229 78 IGMVFQDFALFPHLTVLENIALG---------------------------------------LSGGQQQRVALARALAMD 118 (178)
T ss_pred EEEEecCCccCCCCCHHHheeec---------------------------------------CCHHHHHHHHHHHHHHCC
Confidence 9999999998864 999998763 999999999999999999
Q ss_pred CCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCe
Q 041277 518 PRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQ 574 (1133)
Q Consensus 518 ~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~ 574 (1133)
|+++||||||++||+.++..+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|+
T Consensus 119 p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 119 PDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 999999999999999999999999998754 6999999999999985 99999999985
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=346.32 Aligned_cols=200 Identities=31% Similarity=0.445 Sum_probs=166.6
Q ss_pred EEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCC----CHHHHhh
Q 041277 362 EFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKL----QLKWLRS 437 (1133)
Q Consensus 362 ~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~----~~~~~r~ 437 (1133)
++ |++++|++. .+ |+||++++ |+++|+||||||||||+++|+|+++|++|+|.++|.++... +....++
T Consensus 3 ~~-~l~~~~~~~---~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 75 (214)
T cd03297 3 CV-DIEKRLPDF---TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQR 75 (214)
T ss_pred ee-eeeEecCCe---ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhh
Confidence 44 899999753 24 99999999 99999999999999999999999999999999999988643 2334677
Q ss_pred hceEEecCCCCcc-ccHHHHHhcCCCCCCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHH
Q 041277 438 QMGLVSQEPALFA-TSIKENILFGKEDASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIAR 512 (1133)
Q Consensus 438 ~i~~v~Q~~~l~~-~ti~eni~~~~~~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iAR 512 (1133)
+++|++|++.+|. .|++||+.++...... +++.+.++..+ ++......+.+||||||||++|||
T Consensus 76 ~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qrv~la~ 144 (214)
T cd03297 76 KIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLG-----------LDHLLNRYPAQLSGGEKQRVALAR 144 (214)
T ss_pred cEEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcC-----------CHhHhhcCcccCCHHHHHHHHHHH
Confidence 8999999999986 4999999876432111 22333333333 333444566799999999999999
Q ss_pred HHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-C-CCeEEEEecCcchhhc-CCEEEEEeCCeEEeec
Q 041277 513 AIIKAPRILLLDEATSALDSESERVVQEALDKAV-V-GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETG 579 (1133)
Q Consensus 513 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 579 (1133)
|++.+|+++||||||++||+.+++.+.+.++++. + ++|+|++||+++.+.. ||++++|++|+++++|
T Consensus 145 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 145 ALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999998874 3 7999999999999865 9999999999998765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=334.06 Aligned_cols=170 Identities=33% Similarity=0.608 Sum_probs=156.9
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
++++|++++|++. ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ..+++.++
T Consensus 1 l~~~~l~~~~~~~---~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (173)
T cd03230 1 IEVRNLSKRYGKK---TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIG 76 (173)
T ss_pred CEEEEEEEEECCe---eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEE
Confidence 4689999999743 4899999999999999999999999999999999999999999999999987655 56778899
Q ss_pred EEecCCCCccc-cHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCC
Q 041277 441 LVSQEPALFAT-SIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPR 519 (1133)
Q Consensus 441 ~v~Q~~~l~~~-ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~ 519 (1133)
|++|++.+|.+ |++||+. ||||||||++||||++.+|+
T Consensus 77 ~~~q~~~~~~~~tv~~~~~-----------------------------------------LS~G~~qrv~laral~~~p~ 115 (173)
T cd03230 77 YLPEEPSLYENLTVRENLK-----------------------------------------LSGGMKQRLALAQALLHDPE 115 (173)
T ss_pred EEecCCccccCCcHHHHhh-----------------------------------------cCHHHHHHHHHHHHHHcCCC
Confidence 99999999876 9999974 99999999999999999999
Q ss_pred EEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeE
Q 041277 520 ILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQV 575 (1133)
Q Consensus 520 illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i 575 (1133)
++||||||++||+.+.+.+.+.|++.. +|.|+|++||+.+.+.. ||++++|++|++
T Consensus 116 illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 116 LLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 999999999999999999999999875 47899999999998875 999999999974
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-39 Score=341.50 Aligned_cols=191 Identities=24% Similarity=0.371 Sum_probs=162.8
Q ss_pred cEEEEEEEEEcCCC-CCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccC---CCccEEEECCeecCCCCHHHH
Q 041277 360 EVEFKCVQFAYPSR-PESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYA---PLGGEIILDGVSIDKLQLKWL 435 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~-~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~---~~~G~i~~~g~~~~~~~~~~~ 435 (1133)
.+.++||+|.|+.. .++.+|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...+ ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence 36899999999753 34569999999999999999999999999999999999999 89999999999987654 356
Q ss_pred hhhceEEecCCCCccc-cHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHH
Q 041277 436 RSQMGLVSQEPALFAT-SIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAI 514 (1133)
Q Consensus 436 r~~i~~v~Q~~~l~~~-ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal 514 (1133)
+++++|++|++.+|.. |++||+.++... . ..+....||||||||++||||+
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~----------~------------------~~~~~~~LS~Ge~qrl~laral 133 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALRC----------K------------------GNEFVRGISGGERKRVSIAEAL 133 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhhh----------c------------------cccchhhCCHHHHHHHHHHHHH
Confidence 7789999999988875 999999875210 0 1223458999999999999999
Q ss_pred hhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecC-cchhh-cCCEEEEEeCCeEEeec
Q 041277 515 IKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHR-LSTIR-NADVIAVVQDGQVMETG 579 (1133)
Q Consensus 515 ~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~-~~~~~-~~d~i~~l~~G~i~~~g 579 (1133)
+++|+++||||||++||+++++.+.+.++++.+ +.|+|+++|+ .+.+. .||++++|++|++++.|
T Consensus 134 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 134 VSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred hhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 999999999999999999999999999998753 5676766554 56665 59999999999998764
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=310.06 Aligned_cols=208 Identities=29% Similarity=0.384 Sum_probs=173.9
Q ss_pred cEEEEEEEEEcCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHH---HH
Q 041277 360 EVEFKCVQFAYPSRP-ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLK---WL 435 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~---~~ 435 (1133)
-|+++++++.-+... +..+|++++|.|++||.+|||||||||||||+.+++|+-+|++|+|++.|+++.+++.+ .+
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 477888888775432 34689999999999999999999999999999999999999999999999999998754 34
Q ss_pred h-hhceEEecCCCCcc-ccHHHHHhcCCCCCC------HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHH
Q 041277 436 R-SQMGLVSQEPALFA-TSIKENILFGKEDAS------MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQR 507 (1133)
Q Consensus 436 r-~~i~~v~Q~~~l~~-~ti~eni~~~~~~~~------~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqr 507 (1133)
| +++|+|+|...|.+ .|-.||+..+..-.. .+...+.++.+++.+ .+...+.+|||||+||
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~-----------Rl~HyP~qLSGGEQQR 154 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGK-----------RLTHYPAQLSGGEQQR 154 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCccc-----------ccccCccccCchHHHH
Confidence 4 57999999998875 599999987643111 122333344444444 4444556999999999
Q ss_pred HHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhcCCEEEEEeCCeEEee
Q 041277 508 IAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRNADVIAVVQDGQVMET 578 (1133)
Q Consensus 508 i~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~ 578 (1133)
||||||+...|+||+-||||-+||.+|.+.|.+.+-.+. .|.|.|+|||+......|||++-|.+|++++.
T Consensus 155 VAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~~ 227 (228)
T COG4181 155 VALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVED 227 (228)
T ss_pred HHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceeccC
Confidence 999999999999999999999999999999999987653 58999999999999999999999999999863
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-39 Score=353.75 Aligned_cols=214 Identities=25% Similarity=0.397 Sum_probs=176.4
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCC----CccEEEECCeecCCCCHHHH
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP----LGGEIILDGVSIDKLQLKWL 435 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~----~~G~i~~~g~~~~~~~~~~~ 435 (1133)
.++++|++++| ++ ++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++... ...
T Consensus 4 ~l~~~~l~~~~-~~---~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~ 77 (254)
T PRK10418 4 QIELRNIALQA-AQ---PLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALR 77 (254)
T ss_pred EEEEeCeEEEe-cc---ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--ccc
Confidence 48999999999 32 489999999999999999999999999999999999999 999999999988632 222
Q ss_pred hhhceEEecCCC-Ccc--ccHHHHHhcC----CCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHH
Q 041277 436 RSQMGLVSQEPA-LFA--TSIKENILFG----KEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRI 508 (1133)
Q Consensus 436 r~~i~~v~Q~~~-l~~--~ti~eni~~~----~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 508 (1133)
++.++||+|++. .|. .|+.+|+.+. ......+++.+.++..++.+. ++.++....+||||||||+
T Consensus 78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq~qrv 149 (254)
T PRK10418 78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGMLQRM 149 (254)
T ss_pred cceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHHHHHH
Confidence 467999999985 343 4888887542 111223445555555554321 1234556679999999999
Q ss_pred HHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhc
Q 041277 509 AIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELI 585 (1133)
Q Consensus 509 ~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 585 (1133)
+|||||+.+|++|||||||++||+.+++.+.+.|+++. .|+|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 150 ~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 150 MIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLF 229 (254)
T ss_pred HHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999999999999999999998874 37899999999999865 9999999999999999999987
Q ss_pred cc
Q 041277 586 QA 587 (1133)
Q Consensus 586 ~~ 587 (1133)
+.
T Consensus 230 ~~ 231 (254)
T PRK10418 230 NA 231 (254)
T ss_pred hC
Confidence 63
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-39 Score=353.16 Aligned_cols=224 Identities=29% Similarity=0.430 Sum_probs=180.3
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCee-----cCCCCHHH
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVS-----IDKLQLKW 434 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~-----~~~~~~~~ 434 (1133)
.|+++||+++|++. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +...+...
T Consensus 3 ~l~~~~l~~~~~~~---~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (253)
T TIGR02323 3 LLQVSGLSKSYGGG---KGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79 (253)
T ss_pred eEEEeeeEEEeCCc---eEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHH
Confidence 48999999999743 48999999999999999999999999999999999999999999999987 76665543
Q ss_pred ----HhhhceEEecCCC--Cc-cccHHHHHhcCC---CCCCHHHHHHHHHHhchHHHHHhCCCccc-ccccCCCCCCChH
Q 041277 435 ----LRSQMGLVSQEPA--LF-ATSIKENILFGK---EDASMEEVIEAAKASNAHNFIRQLPQQYD-TQVGERGVQMSGG 503 (1133)
Q Consensus 435 ----~r~~i~~v~Q~~~--l~-~~ti~eni~~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgG 503 (1133)
+++.++|++|++. ++ ..|+.+|+.+.. ......+. ...+.++++.++ ++ +.....+.+||||
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~l~~l~--l~~~~~~~~~~~LSgG 152 (253)
T TIGR02323 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNI-----RAAAHDWLEEVE--IDPTRIDDLPRAFSGG 152 (253)
T ss_pred HHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHH-----HHHHHHHHHHcC--CChhhhhcCchhcCHH
Confidence 2457999999985 22 348888885421 00111111 122344555553 32 3556677899999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecC
Q 041277 504 QKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGS 580 (1133)
Q Consensus 504 qkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 580 (1133)
||||++|||||+.+|++|||||||++||+.+++.+.+.|++.. .+.|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 153 ~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~ 232 (253)
T TIGR02323 153 MQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGL 232 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999998864 38999999999999875 99999999999999999
Q ss_pred cchhccccchhhH
Q 041277 581 HDELIQAESGLYT 593 (1133)
Q Consensus 581 ~~~l~~~~~~~~~ 593 (1133)
++++.......|.
T Consensus 233 ~~~~~~~~~~~~~ 245 (253)
T TIGR02323 233 TDQVLDDPQHPYT 245 (253)
T ss_pred HHHHhcCCCCHHH
Confidence 9988753333444
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=304.64 Aligned_cols=220 Identities=27% Similarity=0.511 Sum_probs=186.3
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCee--cCCCC----HH
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVS--IDKLQ----LK 433 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~--~~~~~----~~ 433 (1133)
.|+++|++|.|+.. .+|.||+|+.+.||++.+.||||+|||||++.|.-+--|.+|+..|.|.. .+..+ ..
T Consensus 2 sirv~~in~~yg~~---q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~ 78 (242)
T COG4161 2 SIQLNGINCFYGAH---QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred ceEEcccccccccc---hheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHH
Confidence 48899999999864 38999999999999999999999999999999999999999999998754 33322 35
Q ss_pred HHhhhceEEecCCCCccc-cHHHHHhcC------CC-CCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHH
Q 041277 434 WLRSQMGLVSQEPALFAT-SIKENILFG------KE-DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQK 505 (1133)
Q Consensus 434 ~~r~~i~~v~Q~~~l~~~-ti~eni~~~------~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 505 (1133)
.+|+.+|+|+|+-.|++- ||.||+.-. .+ +....+..+.++...+.++.+++| ..|||||+
T Consensus 79 ~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~p-----------lhlsggqq 147 (242)
T COG4161 79 DLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYP-----------LHLSGGQQ 147 (242)
T ss_pred HHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCc-----------eecccchh
Confidence 789999999999999865 999998632 11 111234556677777778888877 48999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcch
Q 041277 506 QRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDE 583 (1133)
Q Consensus 506 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 583 (1133)
||+||||||+.+|++|++||||++|||+-..++.+.|+++. .|.|-++|||..+..+. |.+++.|++|+|+|.|+++-
T Consensus 148 qrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~ 227 (242)
T COG4161 148 QRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred hhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhh
Confidence 99999999999999999999999999999999999999986 48999999999999987 99999999999999999887
Q ss_pred hccccchhhH
Q 041277 584 LIQAESGLYT 593 (1133)
Q Consensus 584 l~~~~~~~~~ 593 (1133)
.-+.+...|+
T Consensus 228 ft~p~te~f~ 237 (242)
T COG4161 228 FTEPQTEAFK 237 (242)
T ss_pred ccCccHHHHH
Confidence 7553333333
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=315.31 Aligned_cols=205 Identities=30% Similarity=0.458 Sum_probs=171.2
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
+..++++.+|++.+ ..+|+|+|++|.+||+++++||||||||||+|+++|+.+|+.|+|.+||..|..-.. .=|
T Consensus 4 l~~~~~sl~y~g~~-~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPga-----erg 77 (259)
T COG4525 4 LNVSHLSLSYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGA-----ERG 77 (259)
T ss_pred eehhheEEecCCcc-hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCc-----cce
Confidence 56778999998764 569999999999999999999999999999999999999999999999998875433 348
Q ss_pred EEecCCCCccc-cHHHHHhcCCCCC--CH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHH
Q 041277 441 LVSQEPALFAT-SIKENILFGKEDA--SM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARA 513 (1133)
Q Consensus 441 ~v~Q~~~l~~~-ti~eni~~~~~~~--~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa 513 (1133)
+|+|++-|++- ++.||+.||..-. .. +...+.+..+++.++-++ ...+||||||||+.||||
T Consensus 78 vVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~-----------~i~qLSGGmrQRvGiARA 146 (259)
T COG4525 78 VVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHK-----------YIWQLSGGMRQRVGIARA 146 (259)
T ss_pred eEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCccccccc-----------ceEeecchHHHHHHHHHH
Confidence 99999999976 9999999985421 11 223334445555443322 346899999999999999
Q ss_pred HhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEe--CCeEEeecCcc
Q 041277 514 IIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQ--DGQVMETGSHD 582 (1133)
Q Consensus 514 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~--~G~i~~~g~~~ 582 (1133)
|..+|+.|+||||++|||.-+++.+|+.+.++. .|+.+++|||+++..-. |++++||+ .|+|++.-+++
T Consensus 147 La~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 147 LAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred hhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCCC
Confidence 999999999999999999999999999998764 49999999999998765 99999997 57998865543
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-39 Score=342.81 Aligned_cols=226 Identities=34% Similarity=0.448 Sum_probs=192.0
Q ss_pred cccEEEEEEEEEcCCCC--------CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCC
Q 041277 358 LGEVEFKCVQFAYPSRP--------ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDK 429 (1133)
Q Consensus 358 ~~~i~~~~v~~~y~~~~--------~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~ 429 (1133)
..-++.+|+...|+-+. ...+.+++||++++||+++|||.||||||||-.+|+|+.++. |+|.++|+++..
T Consensus 274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~ 352 (534)
T COG4172 274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDG 352 (534)
T ss_pred CceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccc
Confidence 34588999999987432 134789999999999999999999999999999999999887 999999999998
Q ss_pred CCHHH---HhhhceEEecCCCC--cc-ccHHHHHhcCC----CCC----CHHHHHHHHHHhchHHH-HHhCCCccccccc
Q 041277 430 LQLKW---LRSQMGLVSQEPAL--FA-TSIKENILFGK----EDA----SMEEVIEAAKASNAHNF-IRQLPQQYDTQVG 494 (1133)
Q Consensus 430 ~~~~~---~r~~i~~v~Q~~~l--~~-~ti~eni~~~~----~~~----~~~~~~~~~~~~~~~~~-i~~l~~g~~t~~~ 494 (1133)
.+.+. +|+++-+|+|||+= -+ .||.+-|.-|. |.. .++++.+|++.+|++.- ..+.
T Consensus 353 ~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RY--------- 423 (534)
T COG4172 353 LSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRY--------- 423 (534)
T ss_pred cChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcC---------
Confidence 88765 67899999999963 22 48777765442 222 34567788888887653 2333
Q ss_pred CCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEe
Q 041277 495 ERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQ 571 (1133)
Q Consensus 495 ~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~ 571 (1133)
+.++|||||||||||||++-+|++++|||||||||...+.+|.+.++++. .|-+-++|+||+..++. ||+|+||+
T Consensus 424 --PhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~ 501 (534)
T COG4172 424 --PHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMR 501 (534)
T ss_pred --CcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEe
Confidence 46899999999999999999999999999999999999999999999875 47899999999999987 99999999
Q ss_pred CCeEEeecCcchhccccchhhHHH
Q 041277 572 DGQVMETGSHDELIQAESGLYTSL 595 (1133)
Q Consensus 572 ~G~i~~~g~~~~l~~~~~~~~~~~ 595 (1133)
+|+|||+|+.+++..++...|.+-
T Consensus 502 ~GkiVE~G~~~~if~~P~~~YT~~ 525 (534)
T COG4172 502 DGKIVEQGPTEAVFANPQHEYTRA 525 (534)
T ss_pred CCEEeeeCCHHHHhcCCCcHHHHH
Confidence 999999999999998888888654
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-39 Score=354.76 Aligned_cols=210 Identities=25% Similarity=0.427 Sum_probs=173.4
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.|+++|++++|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...++.+
T Consensus 6 ~l~~~~l~~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i 80 (272)
T PRK15056 6 GIVVNDVTVTWRNG--HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLV 80 (272)
T ss_pred eEEEEeEEEEecCC--cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceE
Confidence 48999999999632 358999999999999999999999999999999999999999999999998742 1123469
Q ss_pred eEEecCCCC---ccccHHHHHhcCCCC---------C-CHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHH
Q 041277 440 GLVSQEPAL---FATSIKENILFGKED---------A-SMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQ 506 (1133)
Q Consensus 440 ~~v~Q~~~l---~~~ti~eni~~~~~~---------~-~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 506 (1133)
+|+||++.+ +..++++|+.++... . ..+++.++++..++.++.+ ....+|||||||
T Consensus 81 ~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgG~~q 149 (272)
T PRK15056 81 AYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRH-----------RQIGELSGGQKK 149 (272)
T ss_pred EEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhc-----------CCcccCCHHHHH
Confidence 999999865 345899998754210 0 1223445556666554432 234579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchh
Q 041277 507 RIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584 (1133)
Q Consensus 507 ri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 584 (1133)
|++|||||+.+|+++||||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+.. ||+++++ +|++++.|+++++
T Consensus 150 rv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~ 228 (272)
T PRK15056 150 RVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETT 228 (272)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhc
Confidence 9999999999999999999999999999999999998875 48999999999998865 9999777 8999999999988
Q ss_pred cc
Q 041277 585 IQ 586 (1133)
Q Consensus 585 ~~ 586 (1133)
..
T Consensus 229 ~~ 230 (272)
T PRK15056 229 FT 230 (272)
T ss_pred cC
Confidence 64
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=316.37 Aligned_cols=221 Identities=25% Similarity=0.458 Sum_probs=192.0
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
|+++||+++|++. .+++++|++|++|.+++++||||+|||||+.++.|+.++++|+|.+||.++.+.+.+.|.+.++
T Consensus 2 I~i~nv~K~y~~~---~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lS 78 (252)
T COG4604 2 ITIENVSKSYGTK---VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLS 78 (252)
T ss_pred eeehhhhHhhCCE---EeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHH
Confidence 6889999999754 5999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCccc-cHHHHHhcCCCCCC--------HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHH
Q 041277 441 LVSQEPALFAT-SIKENILFGKEDAS--------MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIA 511 (1133)
Q Consensus 441 ~v~Q~~~l~~~-ti~eni~~~~~~~~--------~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iA 511 (1133)
+.-|+..+-.. ||+|-+.||+-.++ ...+.+|.+-.++.+.-++. -.+||||||||.-||
T Consensus 79 ILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dry-----------Ld~LSGGQrQRAfIA 147 (252)
T COG4604 79 ILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRY-----------LDELSGGQRQRAFIA 147 (252)
T ss_pred HHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHh-----------HHhcccchhhhhhhh
Confidence 99999988654 99999999863222 23455666665554433322 237999999999999
Q ss_pred HHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcccc
Q 041277 512 RAIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQAE 588 (1133)
Q Consensus 512 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 588 (1133)
..+++|.+.++||||..+||......+++.++++.+ |||+++|-|+.+++.. +|+|+-|++|+++.+|+++|+++
T Consensus 148 MVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~-- 225 (252)
T COG4604 148 MVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQ-- 225 (252)
T ss_pred eeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcC--
Confidence 999999999999999999999999999999998753 8999999999999875 99999999999999999999997
Q ss_pred chhhHHHHH
Q 041277 589 SGLYTSLVR 597 (1133)
Q Consensus 589 ~~~~~~~~~ 597 (1133)
.....+++.
T Consensus 226 ~~~L~eiyd 234 (252)
T COG4604 226 PEILSEIYD 234 (252)
T ss_pred HHHHHHHhc
Confidence 344455543
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-39 Score=336.73 Aligned_cols=183 Identities=31% Similarity=0.511 Sum_probs=161.7
Q ss_pred cEEEEEEEEEcCCC---CCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhcc--CCCccEEEECCeecCCCCHHH
Q 041277 360 EVEFKCVQFAYPSR---PESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFY--APLGGEIILDGVSIDKLQLKW 434 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~---~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~--~~~~G~i~~~g~~~~~~~~~~ 434 (1133)
.|+++|++|+|++. .++++|+|+||++++||+++|+||||||||||+++|+|++ +|++|+|.+||+++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 48999999999752 0245999999999999999999999999999999999999 9999999999998864 25
Q ss_pred HhhhceEEecCCCCccc-cHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHH
Q 041277 435 LRSQMGLVSQEPALFAT-SIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARA 513 (1133)
Q Consensus 435 ~r~~i~~v~Q~~~l~~~-ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa 513 (1133)
++++++|++|++.+|.. |++||+.++.. . . .||||||||++||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~~-------------~--~-------------------~LS~G~~qrv~lara 125 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAAK-------------L--R-------------------GLSGGERKRVSIALE 125 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHHH-------------h--c-------------------cCCHHHHHHHHHHHH
Confidence 67889999999998875 99999975310 0 0 699999999999999
Q ss_pred HhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcc-hhh-cCCEEEEEeCCeEEeec
Q 041277 514 IIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLS-TIR-NADVIAVVQDGQVMETG 579 (1133)
Q Consensus 514 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~-~~~-~~d~i~~l~~G~i~~~g 579 (1133)
++.+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++ .+. .||++++|++|++++.|
T Consensus 126 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 126 LVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 999999999999999999999999999999875 4899999999997 565 49999999999998754
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=346.24 Aligned_cols=208 Identities=24% Similarity=0.425 Sum_probs=178.5
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
-++++|++++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +..+
T Consensus 4 ~l~~~~l~~~~~~~---~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i 69 (251)
T PRK09544 4 LVSLENVSVSFGQR---RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRI 69 (251)
T ss_pred EEEEeceEEEECCc---eEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCE
Confidence 48899999999743 499999999999999999999999999999999999999999999987 2369
Q ss_pred eEEecCCCCcc---ccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhh
Q 041277 440 GLVSQEPALFA---TSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIK 516 (1133)
Q Consensus 440 ~~v~Q~~~l~~---~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~ 516 (1133)
+|++|++.++. .|+++|+.+.. ....+++.++++..++.+.++.. ..+||||||||++||||++.
T Consensus 70 ~~v~q~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LSgGq~qrv~laral~~ 137 (251)
T PRK09544 70 GYVPQKLYLDTTLPLTVNRFLRLRP-GTKKEDILPALKRVQAGHLIDAP-----------MQKLSGGETQRVLLARALLN 137 (251)
T ss_pred EEeccccccccccChhHHHHHhccc-cccHHHHHHHHHHcCChHHHhCC-----------hhhCCHHHHHHHHHHHHHhc
Confidence 99999998764 48999987642 33456777888888877665543 35899999999999999999
Q ss_pred CCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhccccchhhH
Q 041277 517 APRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQAESGLYT 593 (1133)
Q Consensus 517 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 593 (1133)
+|+++||||||++||+.++..+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++ ++++.|+++++.+ ...|.
T Consensus 138 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~--~~~~~ 214 (251)
T PRK09544 138 RPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL--HPEFI 214 (251)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC--CHHHH
Confidence 9999999999999999999999999988743 7999999999999865 999999965 7999999999864 34455
Q ss_pred HHH
Q 041277 594 SLV 596 (1133)
Q Consensus 594 ~~~ 596 (1133)
+++
T Consensus 215 ~~~ 217 (251)
T PRK09544 215 SMF 217 (251)
T ss_pred HHh
Confidence 554
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=391.73 Aligned_cols=224 Identities=29% Similarity=0.415 Sum_probs=185.4
Q ss_pred cEEEEEEEEEcCCCC--------CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCC
Q 041277 360 EVEFKCVQFAYPSRP--------ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQ 431 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~--------~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~ 431 (1133)
-++++|++++|+.+. ...+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~ 392 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS 392 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCC
Confidence 489999999996311 135899999999999999999999999999999999999999999999999998765
Q ss_pred HH---HHhhhceEEecCC--CCcc-ccHHHHHhcCCC--CC-C----HHHHHHHHHHhchH-HHHHhCCCcccccccCCC
Q 041277 432 LK---WLRSQMGLVSQEP--ALFA-TSIKENILFGKE--DA-S----MEEVIEAAKASNAH-NFIRQLPQQYDTQVGERG 497 (1133)
Q Consensus 432 ~~---~~r~~i~~v~Q~~--~l~~-~ti~eni~~~~~--~~-~----~~~~~~~~~~~~~~-~~i~~l~~g~~t~~~~~g 497 (1133)
.. .+|++|+||+|+| .+++ .||.||+.++.. .. . .+++.+.++..++. +..++ ..
T Consensus 393 ~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~-----------~~ 461 (623)
T PRK10261 393 PGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWR-----------YP 461 (623)
T ss_pred HHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhC-----------Cc
Confidence 43 3567899999998 3665 499999976321 11 1 12344555555552 23333 34
Q ss_pred CCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCe
Q 041277 498 VQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQ 574 (1133)
Q Consensus 498 ~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~ 574 (1133)
.+||||||||++|||||+.+|++||||||||+||+.++..+.+.|+++. .|.|+|+|||+++.+.. ||+|++|++|+
T Consensus 462 ~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~ 541 (623)
T PRK10261 462 HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQ 541 (623)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 5899999999999999999999999999999999999999999998874 37999999999999876 99999999999
Q ss_pred EEeecCcchhccccchhhHH
Q 041277 575 VMETGSHDELIQAESGLYTS 594 (1133)
Q Consensus 575 i~~~g~~~~l~~~~~~~~~~ 594 (1133)
|++.|+++++..++...|..
T Consensus 542 iv~~g~~~~i~~~p~~~~~~ 561 (623)
T PRK10261 542 IVEIGPRRAVFENPQHPYTR 561 (623)
T ss_pred EEEecCHHHHhcCCCCHHHH
Confidence 99999999997655556655
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=349.27 Aligned_cols=212 Identities=25% Similarity=0.358 Sum_probs=174.8
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhc--cCCCccEEEECCeecCCCCHHHHhh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRF--YAPLGGEIILDGVSIDKLQLKWLRS 437 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~--~~~~~G~i~~~g~~~~~~~~~~~r~ 437 (1133)
.++++|++++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+ ++|++|+|.++|.++...+....++
T Consensus 7 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T CHL00131 7 ILEIKNLHASVNE---NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAH 83 (252)
T ss_pred eEEEEeEEEEeCC---EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhe
Confidence 4899999999974 3499999999999999999999999999999999998 6899999999999998877655544
Q ss_pred -hceEEecCCCCccc-cHHHHHhcCCC---------CCCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCC-CCC
Q 041277 438 -QMGLVSQEPALFAT-SIKENILFGKE---------DASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGV-QMS 501 (1133)
Q Consensus 438 -~i~~v~Q~~~l~~~-ti~eni~~~~~---------~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~-~LS 501 (1133)
.++|++|++.++++ |+.+|+.++.. +... +++.++++..++.+ +....... .||
T Consensus 84 ~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~~LS 153 (252)
T CHL00131 84 LGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDP----------SFLSRNVNEGFS 153 (252)
T ss_pred eeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCch----------hhhccccccCCC
Confidence 48999999999876 89999876421 0011 12233333333321 12233333 599
Q ss_pred hHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc--CCEEEEEeCCeEEee
Q 041277 502 GGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN--ADVIAVVQDGQVMET 578 (1133)
Q Consensus 502 gGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~--~d~i~~l~~G~i~~~ 578 (1133)
||||||++||||++++|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.
T Consensus 154 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~ 233 (252)
T CHL00131 154 GGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKT 233 (252)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEe
Confidence 999999999999999999999999999999999999999998875 48999999999998874 899999999999999
Q ss_pred cCcchh
Q 041277 579 GSHDEL 584 (1133)
Q Consensus 579 g~~~~l 584 (1133)
|+++++
T Consensus 234 ~~~~~~ 239 (252)
T CHL00131 234 GDAELA 239 (252)
T ss_pred cChhhh
Confidence 998743
|
|
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=335.99 Aligned_cols=185 Identities=31% Similarity=0.461 Sum_probs=162.7
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhc--cCCCccEEEECCeecCCCCHHHH-hh
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRF--YAPLGGEIILDGVSIDKLQLKWL-RS 437 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~--~~~~~G~i~~~g~~~~~~~~~~~-r~ 437 (1133)
++++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+ ++|++|+|.+||+++.+.+.... |.
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (200)
T cd03217 1 LEIKDLHVSVGG---KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARL 77 (200)
T ss_pred CeEEEEEEEeCC---EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhC
Confidence 468999999974 3599999999999999999999999999999999999 58999999999999988776554 45
Q ss_pred hceEEecCCCCccc-cHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhh
Q 041277 438 QMGLVSQEPALFAT-SIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIK 516 (1133)
Q Consensus 438 ~i~~v~Q~~~l~~~-ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~ 516 (1133)
+++|+||++.++++ ++++|+ ... ..+||||||||++||||+++
T Consensus 78 ~i~~v~q~~~~~~~~~~~~~l-------------------------~~~-----------~~~LS~G~~qrv~laral~~ 121 (200)
T cd03217 78 GIFLAFQYPPEIPGVKNADFL-------------------------RYV-----------NEGFSGGEKKRNEILQLLLL 121 (200)
T ss_pred cEEEeecChhhccCccHHHHH-------------------------hhc-----------cccCCHHHHHHHHHHHHHhc
Confidence 69999999998876 666665 011 13799999999999999999
Q ss_pred CCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhh--cCCEEEEEeCCeEEeecCcchhc
Q 041277 517 APRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIR--NADVIAVVQDGQVMETGSHDELI 585 (1133)
Q Consensus 517 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~--~~d~i~~l~~G~i~~~g~~~~l~ 585 (1133)
+|+++||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+. .||++++|++|++++.| +.|+.
T Consensus 122 ~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~~ 192 (200)
T cd03217 122 EPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKELA 192 (200)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHHH
Confidence 999999999999999999999999999875 4789999999999987 59999999999999998 44443
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=331.70 Aligned_cols=177 Identities=33% Similarity=0.552 Sum_probs=158.6
Q ss_pred EEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceE
Q 041277 362 EFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGL 441 (1133)
Q Consensus 362 ~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 441 (1133)
+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+++.++|
T Consensus 1 ~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 77 (180)
T cd03214 1 EVENLSVGYGG---RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAY 77 (180)
T ss_pred CeeEEEEEECC---eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhH
Confidence 47899999974 348999999999999999999999999999999999999999999999999988888788888999
Q ss_pred EecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEE
Q 041277 442 VSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRIL 521 (1133)
Q Consensus 442 v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~il 521 (1133)
++| +++..++.+++.. .+.+||||||||++||||++++|+++
T Consensus 78 ~~q---------------------------~l~~~gl~~~~~~-----------~~~~LS~G~~qrl~laral~~~p~ll 119 (180)
T cd03214 78 VPQ---------------------------ALELLGLAHLADR-----------PFNELSGGERQRVLLARALAQEPPIL 119 (180)
T ss_pred HHH---------------------------HHHHcCCHhHhcC-----------CcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 999 5555666555433 34589999999999999999999999
Q ss_pred EEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEEeec
Q 041277 522 LLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETG 579 (1133)
Q Consensus 522 llDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 579 (1133)
||||||++||+++.+.+.+.++++.+ ++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 120 llDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 120 LLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999988754 7899999999999855 9999999999998654
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-39 Score=340.96 Aligned_cols=194 Identities=31% Similarity=0.469 Sum_probs=162.4
Q ss_pred EEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCH----HHHhhh
Q 041277 363 FKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQL----KWLRSQ 438 (1133)
Q Consensus 363 ~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~----~~~r~~ 438 (1133)
++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++. ...++.
T Consensus 1 i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 77 (206)
T TIGR03608 1 LKNISKKFGD---KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREK 77 (206)
T ss_pred CcceEEEECC---EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhC
Confidence 4789999974 349999999999999999999999999999999999999999999999999765432 235678
Q ss_pred ceEEecCCCCcc-ccHHHHHhcCCCC--C----CHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHH
Q 041277 439 MGLVSQEPALFA-TSIKENILFGKED--A----SMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIA 511 (1133)
Q Consensus 439 i~~v~Q~~~l~~-~ti~eni~~~~~~--~----~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iA 511 (1133)
++|++|++.+|. .|++||+.++... . ..+++.++++..++.++. .....+||||||||++||
T Consensus 78 i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~lS~G~~qr~~la 146 (206)
T TIGR03608 78 LGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKL-----------KQKIYELSGGEQQRVALA 146 (206)
T ss_pred eeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhh-----------cCChhhCCHHHHHHHHHH
Confidence 999999999987 5999999874321 1 123344555555554433 334468999999999999
Q ss_pred HHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhcCCEEEEE
Q 041277 512 RAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRNADVIAVV 570 (1133)
Q Consensus 512 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~~l 570 (1133)
|||+++|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+..||+|++|
T Consensus 147 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 147 RAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 99999999999999999999999999999998875 489999999999987779999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=332.18 Aligned_cols=172 Identities=26% Similarity=0.488 Sum_probs=156.5
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCH-HHHhhh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQL-KWLRSQ 438 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~-~~~r~~ 438 (1133)
.++++|++++| +|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ...+++
T Consensus 4 ~l~~~~l~~~~-------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (182)
T cd03215 4 VLEVRGLSVKG-------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAG 76 (182)
T ss_pred EEEEeccEEEe-------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCC
Confidence 38899999988 7999999999999999999999999999999999999999999999999988763 456778
Q ss_pred ceEEecCC---CCc-cccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHH
Q 041277 439 MGLVSQEP---ALF-ATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAI 514 (1133)
Q Consensus 439 i~~v~Q~~---~l~-~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal 514 (1133)
++|++|++ .++ ..|++||+.++.. ||||||||++||||+
T Consensus 77 i~~~~q~~~~~~~~~~~t~~e~l~~~~~-------------------------------------LS~G~~qrl~la~al 119 (182)
T cd03215 77 IAYVPEDRKREGLVLDLSVAENIALSSL-------------------------------------LSGGNQQKVVLARWL 119 (182)
T ss_pred eEEecCCcccCcccCCCcHHHHHHHHhh-------------------------------------cCHHHHHHHHHHHHH
Confidence 99999995 344 4699999986421 999999999999999
Q ss_pred hhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeE
Q 041277 515 IKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQV 575 (1133)
Q Consensus 515 ~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i 575 (1133)
+.+|+++||||||++||+++++.+.+.+++.. +++|+|++||+++.+.. ||++++|++|++
T Consensus 120 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 120 ARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred ccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999999874 48999999999998876 999999999974
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=350.26 Aligned_cols=219 Identities=22% Similarity=0.319 Sum_probs=168.9
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhcc--CCCccEEEECCeecCCCCHHHHh-h
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFY--APLGGEIILDGVSIDKLQLKWLR-S 437 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~--~~~~G~i~~~g~~~~~~~~~~~r-~ 437 (1133)
|+++|++++|+++ ++|+|+||+|++|++++|+||||||||||+++|+|++ +|++|+|.++|.++...+....+ +
T Consensus 2 i~~~nl~~~~~~~---~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (248)
T PRK09580 2 LSIKDLHVSVEDK---AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGE 78 (248)
T ss_pred eEEEEEEEEeCCe---eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhc
Confidence 6899999999743 4899999999999999999999999999999999994 79999999999999877765554 5
Q ss_pred hceEEecCCCCccc-cHHHHHhcCCCCC---CHHHHHHHHH-HhchHHHHH--hCCCcccccccCCCCCCChHHHHHHHH
Q 041277 438 QMGLVSQEPALFAT-SIKENILFGKEDA---SMEEVIEAAK-ASNAHNFIR--QLPQQYDTQVGERGVQMSGGQKQRIAI 510 (1133)
Q Consensus 438 ~i~~v~Q~~~l~~~-ti~eni~~~~~~~---~~~~~~~~~~-~~~~~~~i~--~l~~g~~t~~~~~g~~LSgGqkqri~i 510 (1133)
.++|++|++.++.. |..+++.+..... ...+..+..+ ...+.+.++ .+|+++.+... ..+||||||||++|
T Consensus 79 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--~~~LS~G~~qrv~l 156 (248)
T PRK09580 79 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSV--NVGFSGGEKKRNDI 156 (248)
T ss_pred ceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCC--CCCCCHHHHHHHHH
Confidence 69999999987754 5555543211100 0000000000 001112222 23333333211 13799999999999
Q ss_pred HHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC-CCeEEEEecCcchhhc--CCEEEEEeCCeEEeecCcchh
Q 041277 511 ARAIIKAPRILLLDEATSALDSESERVVQEALDKAVV-GRTTIIIAHRLSTIRN--ADVIAVVQDGQVMETGSHDEL 584 (1133)
Q Consensus 511 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~--~d~i~~l~~G~i~~~g~~~~l 584 (1133)
|||++++|++|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+.. ||+|++|++|++++.|++++.
T Consensus 157 aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~~~ 233 (248)
T PRK09580 157 LQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLV 233 (248)
T ss_pred HHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999988754 7999999999999876 899999999999999988754
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-38 Score=334.31 Aligned_cols=195 Identities=26% Similarity=0.402 Sum_probs=167.6
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
++++|++++|+++ .+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+ ..++++++
T Consensus 1 l~i~~l~~~~~~~---~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (201)
T cd03231 1 LEADELTCERDGR---ALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLL 76 (201)
T ss_pred CEEEEEEEEeCCc---eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheE
Confidence 4789999999743 4899999999999999999999999999999999999999999999999986543 45778999
Q ss_pred EEecCCCCc-cccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCC
Q 041277 441 LVSQEPALF-ATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPR 519 (1133)
Q Consensus 441 ~v~Q~~~l~-~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~ 519 (1133)
|++|++.++ ..|++||+.+..+....+++.++++..++.++... ...+||||||||++||||++++|+
T Consensus 77 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~laral~~~p~ 145 (201)
T cd03231 77 YLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDR-----------PVAQLSAGQQRRVALARLLLSGRP 145 (201)
T ss_pred EeccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcC-----------chhhCCHHHHHHHHHHHHHhcCCC
Confidence 999999886 46999999886544455667777777777654332 235899999999999999999999
Q ss_pred EEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhh-cCCEEEEE
Q 041277 520 ILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIR-NADVIAVV 570 (1133)
Q Consensus 520 illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i~~l 570 (1133)
++||||||++||+.+++.+.+.|++.. +++|+|++||+...+. .||+++++
T Consensus 146 llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 146 LWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 999999999999999999999998764 4899999999887665 58999877
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=333.98 Aligned_cols=182 Identities=26% Similarity=0.447 Sum_probs=160.4
Q ss_pred cEEEEEEEEEcCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhcc--CCCccEEEECCeecCCCCHHHHh
Q 041277 360 EVEFKCVQFAYPSRP-ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFY--APLGGEIILDGVSIDKLQLKWLR 436 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~--~~~~G~i~~~g~~~~~~~~~~~r 436 (1133)
.|+++|++++|++.. ++++|+|+||++++||+++|+||||||||||+++|+|++ +|++|+|.++|+++. ..++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 478999999997421 245899999999999999999999999999999999986 489999999999875 4567
Q ss_pred hhceEEecCCCCccc-cHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHh
Q 041277 437 SQMGLVSQEPALFAT-SIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAII 515 (1133)
Q Consensus 437 ~~i~~v~Q~~~l~~~-ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~ 515 (1133)
++++|++|++.+|.. |++||+.++.. ++ +||||||||++||||++
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~----------~~------------------------~LSgGe~qrv~la~al~ 124 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSAL----------LR------------------------GLSVEQRKRLTIGVELA 124 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHHH----------Hh------------------------cCCHHHhHHHHHHHHHh
Confidence 789999999988875 99999986310 00 79999999999999999
Q ss_pred hCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcch-h-hcCCEEEEEeC-CeEEeec
Q 041277 516 KAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLST-I-RNADVIAVVQD-GQVMETG 579 (1133)
Q Consensus 516 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~-~-~~~d~i~~l~~-G~i~~~g 579 (1133)
.+|+++||||||++||+.+++.+.+.+++.. +++|+|++||+++. + ..||+|++|++ |++++.|
T Consensus 125 ~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 125 AKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred cCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 9999999999999999999999999999875 48999999999984 4 55999999999 9998865
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-39 Score=334.49 Aligned_cols=198 Identities=33% Similarity=0.507 Sum_probs=173.5
Q ss_pred cEEEEEEEEEcCCCC------CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHH
Q 041277 360 EVEFKCVQFAYPSRP------ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLK 433 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~------~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~ 433 (1133)
-++++|+++.|+... ...+++||||+|++||+++|||+|||||||+.++|+|+++|++|+|+++|+|+..++
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-- 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-- 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--
Confidence 378899999997532 136899999999999999999999999999999999999999999999999987654
Q ss_pred HHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHH-HHHhCCCcccccccCCCCCCChHHHHHHHHHH
Q 041277 434 WLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHN-FIRQLPQQYDTQVGERGVQMSGGQKQRIAIAR 512 (1133)
Q Consensus 434 ~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~-~i~~l~~g~~t~~~~~g~~LSgGqkqri~iAR 512 (1133)
.....+++.+.++.+++.+ ++.+.| .+|||||||||+|||
T Consensus 82 ----------------------------~~~~~~~v~elL~~Vgl~~~~~~ryP-----------helSGGQrQRi~IAR 122 (268)
T COG4608 82 ----------------------------KEERRERVLELLEKVGLPEEFLYRYP-----------HELSGGQRQRIGIAR 122 (268)
T ss_pred ----------------------------hhHHHHHHHHHHHHhCCCHHHhhcCC-----------cccCchhhhhHHHHH
Confidence 1223456778888877655 556665 489999999999999
Q ss_pred HHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhccccc
Q 041277 513 AIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQAES 589 (1133)
Q Consensus 513 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 589 (1133)
||+.+|+++++|||+|+||.-.+.++.+.+.++. .|-|.++|||+++.+++ ||||.||..|+|+|.|+.+++..++.
T Consensus 123 ALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~ 202 (268)
T COG4608 123 ALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPL 202 (268)
T ss_pred HHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCC
Confidence 9999999999999999999999999999998875 48999999999999998 99999999999999999999998778
Q ss_pred hhhHHHHHh
Q 041277 590 GLYTSLVRL 598 (1133)
Q Consensus 590 ~~~~~~~~~ 598 (1133)
..|.+..-.
T Consensus 203 HpYTk~Ll~ 211 (268)
T COG4608 203 HPYTKALLS 211 (268)
T ss_pred CHHHHHHHH
Confidence 888876544
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=324.04 Aligned_cols=164 Identities=30% Similarity=0.486 Sum_probs=150.0
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
|+++|++++|++. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. ++++
T Consensus 1 i~~~~~~~~~~~~--~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~ 67 (166)
T cd03223 1 IELENLSLATPDG--RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLL 67 (166)
T ss_pred CEEEEEEEEcCCC--CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEE
Confidence 4789999999642 35899999999999999999999999999999999999999999999873 5799
Q ss_pred EEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCE
Q 041277 441 LVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRI 520 (1133)
Q Consensus 441 ~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~i 520 (1133)
|++|++.+++.|++||+.++ .+.+||||||||++||||++++|++
T Consensus 68 ~~~q~~~~~~~tv~~nl~~~-----------------------------------~~~~LS~G~~~rv~laral~~~p~~ 112 (166)
T cd03223 68 FLPQRPYLPLGTLREQLIYP-----------------------------------WDDVLSGGEQQRLAFARLLLHKPKF 112 (166)
T ss_pred EECCCCccccccHHHHhhcc-----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCE
Confidence 99999999888999999864 1358999999999999999999999
Q ss_pred EEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCe
Q 041277 521 LLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQ 574 (1133)
Q Consensus 521 lllDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~ 574 (1133)
+||||||++||+++++.+.+.+++. ++|+|++||+++....||++++|++|-
T Consensus 113 lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 113 VFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred EEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 9999999999999999999999876 689999999998777799999998763
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=344.64 Aligned_cols=206 Identities=24% Similarity=0.401 Sum_probs=172.7
Q ss_pred EEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceE
Q 041277 362 EFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGL 441 (1133)
Q Consensus 362 ~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 441 (1133)
+++||++. . +|+|+||++++||+++|+||||||||||+++|+|++++ +|+|.++|+++...+...+++.++|
T Consensus 2 ~~~~l~~~----~---~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~ 73 (248)
T PRK03695 2 QLNDVAVS----T---RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAY 73 (248)
T ss_pred cccccchh----c---eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEE
Confidence 46777774 1 79999999999999999999999999999999999864 9999999999988887778888999
Q ss_pred EecCCCCc-cccHHHHHhcCCCCC-C----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHh
Q 041277 442 VSQEPALF-ATSIKENILFGKEDA-S----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAII 515 (1133)
Q Consensus 442 v~Q~~~l~-~~ti~eni~~~~~~~-~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~ 515 (1133)
++|++.++ ..|+++|+.++.+.. . .+++.++++..++.+ ........||||||||++||||++
T Consensus 74 v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~la~al~ 142 (248)
T PRK03695 74 LSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDD-----------KLGRSVNQLSGGEWQRVRLAAVVL 142 (248)
T ss_pred ecccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHh-----------HhcCCcccCCHHHHHHHHHHHHHh
Confidence 99998654 679999999864321 1 123334444444433 334455689999999999999999
Q ss_pred h-------CCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 516 K-------APRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 516 ~-------~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
. +|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 143 ~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 143 QVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred ccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence 7 679999999999999999999999998875 58999999999997765 99999999999999999988864
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=341.62 Aligned_cols=206 Identities=29% Similarity=0.440 Sum_probs=166.2
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCC----CccEEEECCeecCCCCHHHHhhhceEEecCCC-Cc-c-
Q 041277 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP----LGGEIILDGVSIDKLQLKWLRSQMGLVSQEPA-LF-A- 450 (1133)
Q Consensus 378 ~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~----~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~-l~-~- 450 (1133)
+++|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++... ...++.++|++|++. .| +
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 57999999999999999999999999999999999999 899999999998654 223467999999995 34 3
Q ss_pred ccHHHHHhcCCC--CC-C---HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEe
Q 041277 451 TSIKENILFGKE--DA-S---MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLD 524 (1133)
Q Consensus 451 ~ti~eni~~~~~--~~-~---~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlD 524 (1133)
.|+.||+.+... .. . .+++.+.++..++.+ + ++.....+.+||||||||++||||++++|+++|||
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~-~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLD 150 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLPD-------P-EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIAD 150 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCc-------h-HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 489999865321 01 1 123444444444321 1 13344556789999999999999999999999999
Q ss_pred CcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhccccchhhH
Q 041277 525 EATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQAESGLYT 593 (1133)
Q Consensus 525 E~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 593 (1133)
|||++||+.+++.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++.......|.
T Consensus 151 EPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~ 222 (230)
T TIGR02770 151 EPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETT 222 (230)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcCCHHH
Confidence 99999999999999999998753 7899999999999865 999999999999999999998753333333
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-38 Score=333.26 Aligned_cols=195 Identities=22% Similarity=0.347 Sum_probs=167.4
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
++++|++++|+++ ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ...+++++
T Consensus 2 l~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~ 77 (204)
T PRK13538 2 LEARNLACERDER---ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLL 77 (204)
T ss_pred eEEEEEEEEECCE---EEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheE
Confidence 6899999999743 4899999999999999999999999999999999999999999999999987654 35677899
Q ss_pred EEecCCCCcc-ccHHHHHhcCCCC---CCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhh
Q 041277 441 LVSQEPALFA-TSIKENILFGKED---ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIK 516 (1133)
Q Consensus 441 ~v~Q~~~l~~-~ti~eni~~~~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~ 516 (1133)
|++|++.+++ .|++||+.++.+. ...+++.++++..++.++.++ ...+||||||||++||||+++
T Consensus 78 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LS~G~~qrl~la~al~~ 146 (204)
T PRK13538 78 YLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDV-----------PVRQLSAGQQRRVALARLWLT 146 (204)
T ss_pred EeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhC-----------ChhhcCHHHHHHHHHHHHHhc
Confidence 9999998886 5999999875421 234566677777777655433 235899999999999999999
Q ss_pred CCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEE
Q 041277 517 APRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVV 570 (1133)
Q Consensus 517 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l 570 (1133)
+|+++||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. .+|++++
T Consensus 147 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 147 RAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 999999999999999999999999998864 57899999999999976 4677776
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-38 Score=339.15 Aligned_cols=191 Identities=32% Similarity=0.434 Sum_probs=160.5
Q ss_pred ccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCcc-ccHHHHH
Q 041277 379 FKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFA-TSIKENI 457 (1133)
Q Consensus 379 l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~-~ti~eni 457 (1133)
|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|++|++.+|. .|++||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHH
Confidence 579999999999999999999999999999999999999999999999876543 2489999999987 5999999
Q ss_pred hcCC----CCCCHH----HHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccC
Q 041277 458 LFGK----EDASME----EVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSA 529 (1133)
Q Consensus 458 ~~~~----~~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~ 529 (1133)
.++. +..+.+ ++.+.++..++.+.. .....+||||||||++|||||+.+|+++||||||++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 144 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAIVEEHIALVGLTEAA-----------DKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGA 144 (230)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHH-----------cCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcC
Confidence 8742 122222 234444444444333 334468999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhc
Q 041277 530 LDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELI 585 (1133)
Q Consensus 530 lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 585 (1133)
||+.+++.+.+.|.++. .++|+|++||+++.+.. ||+|++|++|++++.|+..+++
T Consensus 145 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 203 (230)
T TIGR01184 145 LDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEVP 203 (230)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceecc
Confidence 99999999999998864 37899999999998865 9999999999999998776654
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-38 Score=319.35 Aligned_cols=159 Identities=31% Similarity=0.527 Sum_probs=147.6
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCH-HHHhhhc
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQL-KWLRSQM 439 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~-~~~r~~i 439 (1133)
|+++|++++|+++ ++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. +..++++
T Consensus 1 l~~~~l~~~~~~~---~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i 77 (163)
T cd03216 1 LELRGITKRFGGV---KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGI 77 (163)
T ss_pred CEEEEEEEEECCe---EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCe
Confidence 4789999999743 49999999999999999999999999999999999999999999999999988765 3457789
Q ss_pred eEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCC
Q 041277 440 GLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPR 519 (1133)
Q Consensus 440 ~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~ 519 (1133)
+|++| ||||||||++||||++++|+
T Consensus 78 ~~~~q-------------------------------------------------------LS~G~~qrl~laral~~~p~ 102 (163)
T cd03216 78 AMVYQ-------------------------------------------------------LSVGERQMVEIARALARNAR 102 (163)
T ss_pred EEEEe-------------------------------------------------------cCHHHHHHHHHHHHHhcCCC
Confidence 99999 99999999999999999999
Q ss_pred EEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEe
Q 041277 520 ILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVME 577 (1133)
Q Consensus 520 illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~ 577 (1133)
++||||||++||+++++.+.+.++++. +++|+|++||+++.+.. ||++++|++|++++
T Consensus 103 illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 103 LLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 999999999999999999999998874 58999999999998865 99999999999975
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-38 Score=341.47 Aligned_cols=192 Identities=26% Similarity=0.403 Sum_probs=156.9
Q ss_pred CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEe-cCCCCcc-ccH
Q 041277 376 SIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVS-QEPALFA-TSI 453 (1133)
Q Consensus 376 ~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~-Q~~~l~~-~ti 453 (1133)
+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...++++++|++ |++.++. .|+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCcH
Confidence 3599999999999999999999999999999999999999999999999987543 345677899998 5667764 599
Q ss_pred HHHHhcCCC--CCCHHHH----HHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcc
Q 041277 454 KENILFGKE--DASMEEV----IEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEAT 527 (1133)
Q Consensus 454 ~eni~~~~~--~~~~~~~----~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~t 527 (1133)
+||+.+... ....++. .++++..++.+. .+ ....+||||||||++||||++.+|+++||||||
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-------~~----~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLEEL-------LD----TPVRQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhH-------hc----CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 999976421 1222222 222333333222 22 234579999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeec
Q 041277 528 SALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETG 579 (1133)
Q Consensus 528 s~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 579 (1133)
++||+.+.+.+.+.|+++. .++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999999999874 37899999999998865 9999999999998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-38 Score=331.40 Aligned_cols=194 Identities=23% Similarity=0.388 Sum_probs=162.0
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ....++++++
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~ 77 (200)
T PRK13540 2 LDVIELDFDYHD---QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLC 77 (200)
T ss_pred EEEEEEEEEeCC---eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheE
Confidence 689999999974 349999999999999999999999999999999999999999999999998865 3456788999
Q ss_pred EEecCCCCcc-ccHHHHHhcCCC-CCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCC
Q 041277 441 LVSQEPALFA-TSIKENILFGKE-DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAP 518 (1133)
Q Consensus 441 ~v~Q~~~l~~-~ti~eni~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~ 518 (1133)
|++|++.++. .|++||+.++.. .....++.++++..++.+. ......+||||||||++||||++++|
T Consensus 78 ~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~~rv~laral~~~p 146 (200)
T PRK13540 78 FVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHL-----------IDYPCGLLSSGQKRQVALLRLWMSKA 146 (200)
T ss_pred EeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchh-----------hhCChhhcCHHHHHHHHHHHHHhcCC
Confidence 9999998874 699999998631 1122234444444433222 22233579999999999999999999
Q ss_pred CEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhcCCEEEE
Q 041277 519 RILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRNADVIAV 569 (1133)
Q Consensus 519 ~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~~ 569 (1133)
++|||||||++||+.+.+.+.+.|++.. +++|+|++||+.+.+.+||.-++
T Consensus 147 ~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 147 KLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred CEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 9999999999999999999999999864 58999999999999999997543
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=323.63 Aligned_cols=196 Identities=29% Similarity=0.474 Sum_probs=178.4
Q ss_pred cceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCC----CHHHHhhhceEEecCCCCccc-cHH
Q 041277 380 KDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKL----QLKWLRSQMGLVSQEPALFAT-SIK 454 (1133)
Q Consensus 380 ~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~----~~~~~r~~i~~v~Q~~~l~~~-ti~ 454 (1133)
=++||+.+.-.++||-|+||||||||+|+|+|+..|++|.|.+||.-+.+. ...--+++|||||||..||+- ||+
T Consensus 15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVr 94 (352)
T COG4148 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVR 94 (352)
T ss_pred EEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEe
Confidence 468888888689999999999999999999999999999999999877543 334456789999999999965 999
Q ss_pred HHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHH
Q 041277 455 ENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSES 534 (1133)
Q Consensus 455 eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~ 534 (1133)
.|++||....+..+..+.+...++...+++.|. +|||||||||||+|||+.+|++|+||||.|+||...
T Consensus 95 gNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~-----------~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~R 163 (352)
T COG4148 95 GNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPG-----------TLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPR 163 (352)
T ss_pred cchhhhhcccchHhHHHHHHHhCcHHHHhhCCC-----------ccCcchhhHHHHHHHHhcCCCeeeecCchhhcccch
Confidence 999999987778888899999999999999884 899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 535 ERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 535 ~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
+++++-.++++.+ +.-++.|||.++.+.. ||+|++|++|++...|..+|...
T Consensus 164 K~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~ 218 (352)
T COG4148 164 KREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWG 218 (352)
T ss_pred hhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhc
Confidence 9999999998864 6789999999998865 99999999999999999999886
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=330.56 Aligned_cols=196 Identities=21% Similarity=0.287 Sum_probs=163.3
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
-++++|++++|+++ ++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ..++.+
T Consensus 11 ~l~~~~l~~~~~~~---~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i 84 (214)
T PRK13543 11 LLAAHALAFSRNEE---PVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFM 84 (214)
T ss_pred eEEEeeEEEecCCc---eeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhce
Confidence 48999999999743 489999999999999999999999999999999999999999999999988652 345679
Q ss_pred eEEecCCCCccc-cHHHHHhcCCC--CCC-HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHh
Q 041277 440 GLVSQEPALFAT-SIKENILFGKE--DAS-MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAII 515 (1133)
Q Consensus 440 ~~v~Q~~~l~~~-ti~eni~~~~~--~~~-~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~ 515 (1133)
+|++|++.++.. |++||+.++.. ... .+.+.+.++..++.+. ......+||||||||++||||++
T Consensus 85 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~laral~ 153 (214)
T PRK13543 85 AYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGY-----------EDTLVRQLSAGQKKRLALARLWL 153 (214)
T ss_pred EEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhh-----------ccCChhhCCHHHHHHHHHHHHHh
Confidence 999999998876 99999976422 111 2233334444433222 23344689999999999999999
Q ss_pred hCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeC
Q 041277 516 KAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQD 572 (1133)
Q Consensus 516 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~ 572 (1133)
++|+++||||||++||+++++.+.+.+++.. +++|+|++||+++.+.. ||++++++.
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 154 SPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 9999999999999999999999999998764 57999999999999876 999999864
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=378.50 Aligned_cols=217 Identities=31% Similarity=0.481 Sum_probs=177.8
Q ss_pred cEEEEEEEEEcCCC--------CCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCC
Q 041277 360 EVEFKCVQFAYPSR--------PESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQ 431 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~--------~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~ 431 (1133)
-|+++|++++|+.. .++.+|+|+||+|++||+++|+||||||||||+++|+|++ |++|+|+++|.++...+
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~~~G~i~~~g~~i~~~~ 353 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLN 353 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCcEEEECCEEccccc
Confidence 48999999999631 1245899999999999999999999999999999999998 48999999999987765
Q ss_pred HHH---HhhhceEEecCC--CCcc-ccHHHHHhcCCC----CCC----HHHHHHHHHHhchHHHHHhCCCcccccccCCC
Q 041277 432 LKW---LRSQMGLVSQEP--ALFA-TSIKENILFGKE----DAS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERG 497 (1133)
Q Consensus 432 ~~~---~r~~i~~v~Q~~--~l~~-~ti~eni~~~~~----~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g 497 (1133)
... +|++++||+|++ .+++ .|++||+.++.. ... .+++.++++..++.+ .......
T Consensus 354 ~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~ 423 (529)
T PRK15134 354 RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDP----------ETRHRYP 423 (529)
T ss_pred hhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCH----------HHHhcCC
Confidence 433 467899999998 3665 499999987521 011 122333444444321 1223345
Q ss_pred CCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCe
Q 041277 498 VQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQ 574 (1133)
Q Consensus 498 ~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~ 574 (1133)
.+||||||||++||||++.+|++|||||||++||+.+.+.+.+.|+++. .|+|+|+|||+++.+.. ||+|++|++|+
T Consensus 424 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~ 503 (529)
T PRK15134 424 AEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGE 503 (529)
T ss_pred ccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCE
Confidence 6899999999999999999999999999999999999999999999874 37999999999999875 99999999999
Q ss_pred EEeecCcchhccc
Q 041277 575 VMETGSHDELIQA 587 (1133)
Q Consensus 575 i~~~g~~~~l~~~ 587 (1133)
+++.|+++++.+.
T Consensus 504 i~~~~~~~~~~~~ 516 (529)
T PRK15134 504 VVEQGDCERVFAA 516 (529)
T ss_pred EEEEcCHHHHhcC
Confidence 9999999998753
|
|
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=324.70 Aligned_cols=418 Identities=16% Similarity=0.180 Sum_probs=293.2
Q ss_pred HHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 143 TSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLM-LWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAG 221 (1133)
Q Consensus 143 ~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (1133)
.|+++|+++.-..+.+....++.+++.++....-++.. +|.-...++..+.+-.++...+.+.+.+...++++..++..
T Consensus 186 QrltqDv~kf~~~l~sl~s~l~~a~~di~~Y~~~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qeklEGdfR 265 (659)
T KOG0060|consen 186 QRLTQDVEKFCRQLSSLYSNLLKAPFDLVYYTFRLFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKLEGDFR 265 (659)
T ss_pred HHHhHHHHHHHHHHHHHHHhhhccceeeehhhhHHhhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhhcchh
Confidence 58999999988887766666665555444433333332 33322333344444555666666777777777777777877
Q ss_pred HHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH----HhcCcc
Q 041277 222 TIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGLKQGLAKGLAI-GSNGVTFGIWSFLCYYGSRMV----MYHGAQ 296 (1133)
Q Consensus 222 ~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~v----~~~~~t 296 (1133)
-.-.+...|.+.|..|+.++.+....+...++..+...+.....-... ..+++-+++..+...+-+..+ ..+.++
T Consensus 266 y~h~rlr~NaE~iAFY~g~~~E~~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~Ylg~ilsy~vi~~p~Fs~h~y~~~s 345 (659)
T KOG0060|consen 266 YKHSRLRVNAEEIAFYRGGQVEHQRTDQRFRNLVQHLRELMSFRFWLGFIDNIFDYLGGILSYVVIAIPFFSGHVYDDLS 345 (659)
T ss_pred hheeeeeecchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEEeeeeecccccCCcC
Confidence 777888899999999999999887666666555444333222111111 122222322221111101111 234677
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC-------------CCCC------cc-c
Q 041277 297 GGTVFAVG----ASIAVGGLALGAGLPNLKYFSEAMAAGERIMEMIKRVPKID-------------SDSM------EG-E 352 (1133)
Q Consensus 297 ~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~-------------~~~~------~~-~ 352 (1133)
+..+...+ +++..+...++.+......+.+-..-..||.++++.-.+.. .+.. .+ .
T Consensus 346 ~aEL~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~ 425 (659)
T KOG0060|consen 346 PAELSGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSG 425 (659)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCc
Confidence 77776554 23334445566666666667777777889888765321110 0000 00 0
Q ss_pred ccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCH
Q 041277 353 ILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQL 432 (1133)
Q Consensus 353 ~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~ 432 (1133)
.....+..|+|++|+++-|++ ...+.+|+||+|+.|+.+.|+||||||||+|++.+.|+++..+|.+.--...-.
T Consensus 426 ~~~~~Dn~i~~e~v~l~tPt~-g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~---- 500 (659)
T KOG0060|consen 426 KAEPADNAIEFEEVSLSTPTN-GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGP---- 500 (659)
T ss_pred ccccccceEEeeeeeecCCCC-CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCC----
Confidence 011123569999999999875 345678899999999999999999999999999999999999999975432110
Q ss_pred HHHhhhceEEecCCCCccccHHHHHhcCCC-------CCCHHHHHHHHHHhchHHHHHhCCCcccccc-cCCCCCCChHH
Q 041277 433 KWLRSQMGLVSQEPALFATSIKENILFGKE-------DASMEEVIEAAKASNAHNFIRQLPQQYDTQV-GERGVQMSGGQ 504 (1133)
Q Consensus 433 ~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~-------~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~-~~~g~~LSgGq 504 (1133)
+.+=||||.|+.-.||.||-+.|+.. ..+++++.+.++.+++.+.+++. +|+|+.+ -+-...||+||
T Consensus 501 ----~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~-ggld~~~~~dW~dvLS~GE 575 (659)
T KOG0060|consen 501 ----KDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLERE-GGLDQQVDWDWMDVLSPGE 575 (659)
T ss_pred ----CceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHh-CCCCchhhccHHhhcCHHH
Confidence 35889999999999999999999721 35788999999999998877664 6888655 34567899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeC
Q 041277 505 KQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQD 572 (1133)
Q Consensus 505 kqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~ 572 (1133)
+||+|.||-++++|++-+|||+|||+|.+.|..+.+.+++. |.|.|-|.||-+.-+.-|.++-|+.
T Consensus 576 qQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~--giT~iSVgHRkSL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 576 QQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM--GITFISVGHRKSLWKFHDYVLRMDG 641 (659)
T ss_pred HHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc--CCeEEEeccHHHHHhhhhEEEEecC
Confidence 99999999999999999999999999999999999888764 8999999999999888999999976
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-37 Score=327.17 Aligned_cols=194 Identities=25% Similarity=0.354 Sum_probs=165.4
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
++++|++++|+++ .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .. .+++++
T Consensus 3 l~~~~l~~~~~~~---~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~~-~~~~~~ 76 (207)
T PRK13539 3 LEGEDLACVRGGR---VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--PD-VAEACH 76 (207)
T ss_pred EEEEeEEEEECCe---EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--hh-hHhhcE
Confidence 7899999999743 48999999999999999999999999999999999999999999999998753 22 778899
Q ss_pred EEecCCCCc-cccHHHHHhcCCC--CCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhC
Q 041277 441 LVSQEPALF-ATSIKENILFGKE--DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKA 517 (1133)
Q Consensus 441 ~v~Q~~~l~-~~ti~eni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 517 (1133)
|++|++.++ ..|++||+.+... ....+++.++++..++.++... ...+||||||||++||||++++
T Consensus 77 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~la~al~~~ 145 (207)
T PRK13539 77 YLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHL-----------PFGYLSAGQKRRVALARLLVSN 145 (207)
T ss_pred EecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcC-----------ChhhcCHHHHHHHHHHHHHhcC
Confidence 999988776 5699999976432 2234557777777777654322 2247999999999999999999
Q ss_pred CCEEEEeCcccCCChHHHHHHHHHHHHH-hCCCeEEEEecCcchhhcCCEEEEEeC
Q 041277 518 PRILLLDEATSALDSESERVVQEALDKA-VVGRTTIIIAHRLSTIRNADVIAVVQD 572 (1133)
Q Consensus 518 ~~illlDE~ts~lD~~~~~~i~~~l~~~-~~~~t~i~itH~~~~~~~~d~i~~l~~ 572 (1133)
|+++||||||++||+.+.+.+.+.|++. .+++|+|++||+++.+.. |+++.++.
T Consensus 146 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 146 RPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 9999999999999999999999999875 458999999999999987 99988754
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=326.20 Aligned_cols=193 Identities=22% Similarity=0.336 Sum_probs=162.2
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
++++|++++|+++ .+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++++
T Consensus 1 l~~~~l~~~~~~~---~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (198)
T TIGR01189 1 LAARNLACSRGER---MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNIL 76 (198)
T ss_pred CEEEEEEEEECCE---EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheE
Confidence 4789999999743 4899999999999999999999999999999999999999999999999987664 35677899
Q ss_pred EEecCCCCcc-ccHHHHHhcCCCC--CCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhC
Q 041277 441 LVSQEPALFA-TSIKENILFGKED--ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKA 517 (1133)
Q Consensus 441 ~v~Q~~~l~~-~ti~eni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 517 (1133)
|++|++.+++ .|++||+.+..+. ...+++.++++..++.++++. ...+||||||||++||||++++
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la~al~~~ 145 (198)
T TIGR01189 77 YLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDL-----------PAAQLSAGQQRRLALARLWLSR 145 (198)
T ss_pred EeccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcC-----------ChhhcCHHHHHHHHHHHHHhcC
Confidence 9999998886 5999999865321 123356677777777665433 2358999999999999999999
Q ss_pred CCEEEEeCcccCCChHHHHHHHHHHHHH-hCCCeEEEEecCcchhhcCCEEEE
Q 041277 518 PRILLLDEATSALDSESERVVQEALDKA-VVGRTTIIIAHRLSTIRNADVIAV 569 (1133)
Q Consensus 518 ~~illlDE~ts~lD~~~~~~i~~~l~~~-~~~~t~i~itH~~~~~~~~d~i~~ 569 (1133)
|+++||||||++||+.+++.+.+.|.++ .+++|+|++||+...+ .|++++.
T Consensus 146 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~-~~~~~~~ 197 (198)
T TIGR01189 146 APLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGL-VEARELR 197 (198)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccc-cceEEee
Confidence 9999999999999999999999999886 4589999999998543 2466553
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-37 Score=372.40 Aligned_cols=219 Identities=19% Similarity=0.348 Sum_probs=177.7
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccC-CCccEEEECCeecCCCCH-HHHhh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYA-PLGGEIILDGVSIDKLQL-KWLRS 437 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~-~~~G~i~~~g~~~~~~~~-~~~r~ 437 (1133)
-|+++|++++|+...+.++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...+. +..++
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~ 338 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ 338 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence 4899999999953212358999999999999999999999999999999999998 599999999999865543 34567
Q ss_pred hceEEecCC---CCcc-ccHHHHHhcCCC-CC------CHHHHHHHHHHhchHHHHHhCCCccc-ccccCCCCCCChHHH
Q 041277 438 QMGLVSQEP---ALFA-TSIKENILFGKE-DA------SMEEVIEAAKASNAHNFIRQLPQQYD-TQVGERGVQMSGGQK 505 (1133)
Q Consensus 438 ~i~~v~Q~~---~l~~-~ti~eni~~~~~-~~------~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGqk 505 (1133)
+++|++|++ .++. .|+.||+.++.. .. ..++. ...+.+.++.+ |++ ........+||||||
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgG~k 411 (506)
T PRK13549 339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAE-----LKTILESIQRL--KVKTASPELAIARLSGGNQ 411 (506)
T ss_pred CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHH-----HHHHHHHHHhc--CccCCCcccccccCCHHHH
Confidence 899999996 3665 599999987531 00 11111 11223445544 232 123455678999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcch
Q 041277 506 QRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDE 583 (1133)
Q Consensus 506 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 583 (1133)
||++||||++.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+.. ||++++|++|+++..|+.++
T Consensus 412 qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 491 (506)
T PRK13549 412 QKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHN 491 (506)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEecccc
Confidence 99999999999999999999999999999999999998864 58999999999999876 99999999999999999888
Q ss_pred hc
Q 041277 584 LI 585 (1133)
Q Consensus 584 l~ 585 (1133)
+.
T Consensus 492 ~~ 493 (506)
T PRK13549 492 LT 493 (506)
T ss_pred CC
Confidence 74
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-37 Score=329.65 Aligned_cols=200 Identities=30% Similarity=0.350 Sum_probs=159.6
Q ss_pred EEEEEEEEEcCCC----CCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEEC--Ce--ecCCCCH
Q 041277 361 VEFKCVQFAYPSR----PESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILD--GV--SIDKLQL 432 (1133)
Q Consensus 361 i~~~~v~~~y~~~----~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~--g~--~~~~~~~ 432 (1133)
|+++|++++|+.. ...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |. ++..++.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 6899999999631 11358999999999999999999999999999999999999999999998 42 6655554
Q ss_pred HH---H-hhhceEEecCCCCccc-cHHHHHhcCCC--CCCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCC
Q 041277 433 KW---L-RSQMGLVSQEPALFAT-SIKENILFGKE--DASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMS 501 (1133)
Q Consensus 433 ~~---~-r~~i~~v~Q~~~l~~~-ti~eni~~~~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LS 501 (1133)
.. + +++++|++|++.++.. |++||+.++.. .... +++.++++..++.+.. ....+.+||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LS 151 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERL----------WHLPPATFS 151 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh----------hhCCcccCC
Confidence 33 3 3579999999988865 99999976321 1111 2233333333332211 123456899
Q ss_pred hHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhh-cCCEEEEE
Q 041277 502 GGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIR-NADVIAVV 570 (1133)
Q Consensus 502 gGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i~~l 570 (1133)
||||||++|||||+.+|+++||||||++||+++++.+.+.|++.. +++|+|++||+++.+. .||+++.+
T Consensus 152 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 152 GGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 999999999999999999999999999999999999999998875 4899999999999886 49999876
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=347.67 Aligned_cols=203 Identities=25% Similarity=0.346 Sum_probs=168.4
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.++++|++|+|+++..+++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~------------ 88 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA------------ 88 (549)
T ss_pred eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee------------
Confidence 58899999999765445699999999999999999999999999999999999999999999999752
Q ss_pred eEEecCCCCcc-ccHHHHHhcCC--CCCCHHH----HHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHH
Q 041277 440 GLVSQEPALFA-TSIKENILFGK--EDASMEE----VIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIAR 512 (1133)
Q Consensus 440 ~~v~Q~~~l~~-~ti~eni~~~~--~~~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iAR 512 (1133)
++.+.+.+++ .|++||+.++. ...+.++ +.++++..++.+++.. ...+||||||||++|||
T Consensus 89 -~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~-----------~~~~LSGGQrQRVaLAr 156 (549)
T PRK13545 89 -LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQ-----------PVKTYSSGMKSRLGFAI 156 (549)
T ss_pred -eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhC-----------CcccCCHHHHHHHHHHH
Confidence 2233444443 49999998642 1222322 3344555555544433 34689999999999999
Q ss_pred HHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 513 AIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 513 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
||+.+|++|||||||++||+.+++.+.+.|.++. +|+|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 157 AL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~ 232 (549)
T PRK13545 157 SVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVD 232 (549)
T ss_pred HHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999998864 48999999999999876 99999999999999999999876
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-37 Score=371.84 Aligned_cols=221 Identities=24% Similarity=0.408 Sum_probs=175.3
Q ss_pred cEEEEEEEEEcCC--CCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEEC-Cee---cCCCC--
Q 041277 360 EVEFKCVQFAYPS--RPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILD-GVS---IDKLQ-- 431 (1133)
Q Consensus 360 ~i~~~~v~~~y~~--~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~-g~~---~~~~~-- 431 (1133)
-++++|++++|++ ....++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |.+ +...+
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~ 358 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD 358 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence 5999999999963 112458999999999999999999999999999999999999999999996 643 33332
Q ss_pred -HHHHhhhceEEecCCCCccc-cHHHHHhcCCC-CCCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHH
Q 041277 432 -LKWLRSQMGLVSQEPALFAT-SIKENILFGKE-DASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQ 504 (1133)
Q Consensus 432 -~~~~r~~i~~v~Q~~~l~~~-ti~eni~~~~~-~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 504 (1133)
...+|++|+|+||++.+|.. |++||+.++.. .... +++.++++..++.+. ..+........+|||||
T Consensus 359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~~~~~~LSgGq 432 (520)
T TIGR03269 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEE------KAEEILDKYPDELSEGE 432 (520)
T ss_pred hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCc------cchhhhhCChhhCCHHH
Confidence 23456789999999988875 99999986321 1111 223333333333210 00012344556899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCc
Q 041277 505 KQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSH 581 (1133)
Q Consensus 505 kqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~ 581 (1133)
|||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .|+|+|+|||+++.+.. ||++++|++|++++.|++
T Consensus 433 ~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~ 512 (520)
T TIGR03269 433 RHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDP 512 (520)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999998874 37999999999999876 999999999999999998
Q ss_pred chhcc
Q 041277 582 DELIQ 586 (1133)
Q Consensus 582 ~~l~~ 586 (1133)
+++.+
T Consensus 513 ~~~~~ 517 (520)
T TIGR03269 513 EEIVE 517 (520)
T ss_pred HHHHh
Confidence 87754
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-35 Score=382.21 Aligned_cols=215 Identities=20% Similarity=0.329 Sum_probs=183.6
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhh
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 438 (1133)
..|+++|++++|+++ ++.+|+|+||+|++||++||+||||||||||+++|+|+.+|++|+|.++|+++.+ +....|++
T Consensus 1936 ~~L~v~nLsK~Y~~~-~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~ 2013 (2272)
T TIGR01257 1936 DILRLNELTKVYSGT-SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQN 2013 (2272)
T ss_pred ceEEEEEEEEEECCC-CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhh
Confidence 359999999999742 2459999999999999999999999999999999999999999999999999865 34567788
Q ss_pred ceEEecCCCCccc-cHHHHHhcCCC--CCCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHH
Q 041277 439 MGLVSQEPALFAT-SIKENILFGKE--DASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIA 511 (1133)
Q Consensus 439 i~~v~Q~~~l~~~-ti~eni~~~~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iA 511 (1133)
||||||++.++.. |++||+.+... .... +.+.+.++..++.++.++ ...+||||||||++||
T Consensus 2014 IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk-----------~~~~LSGGqKqRLslA 2082 (2272)
T TIGR01257 2014 MGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADR-----------LAGTYSGGNKRKLSTA 2082 (2272)
T ss_pred EEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcC-----------ChhhCCHHHHHHHHHH
Confidence 9999999988864 99999976311 1112 223445555665554433 3458999999999999
Q ss_pred HHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 512 RAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 512 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
|||+.+|+|++|||||++||+.+++.+++.|+++. +|+|+|++||+++.++. ||||++|++|+++..|+++++.+
T Consensus 2083 ~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~ 2159 (2272)
T TIGR01257 2083 IALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKS 2159 (2272)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 99999999999999999999999999999999864 58999999999999986 99999999999999999999865
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=328.23 Aligned_cols=186 Identities=25% Similarity=0.463 Sum_probs=157.3
Q ss_pred EEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCC---ccccHHHHHhcC
Q 041277 384 LTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPAL---FATSIKENILFG 460 (1133)
Q Consensus 384 l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l---~~~ti~eni~~~ 460 (1133)
|++++||+++|+||||||||||+++|+|+++|++|+|.+||+++. ..+++++|++|++.+ ++.|++||+.++
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhc
Confidence 578999999999999999999999999999999999999998763 246789999999876 357999999875
Q ss_pred CC---------C-CCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCC
Q 041277 461 KE---------D-ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSAL 530 (1133)
Q Consensus 461 ~~---------~-~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~l 530 (1133)
.. . ...+++.++++..++.++.. ....+||||||||++||||++++|+++||||||++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~L 144 (223)
T TIGR03771 76 RTGHIGWLRRPCVADFAAVRDALRRVGLTELAD-----------RPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGL 144 (223)
T ss_pred cccccccccCCcHHHHHHHHHHHHHhCCchhhc-----------CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 21 0 11234555566655544332 234579999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 531 DSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 531 D~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
|+.+++.+.+.|+++. +++|+|++||+++.+.. ||+|+++ +|++++.|+++++.+
T Consensus 145 D~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~ 201 (223)
T TIGR03771 145 DMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQD 201 (223)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcC
Confidence 9999999999998875 58999999999998865 9999999 899999999999865
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=319.57 Aligned_cols=174 Identities=33% Similarity=0.517 Sum_probs=145.9
Q ss_pred CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCC--CCHHHHhhhceEEecCC--CCccc
Q 041277 376 SIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDK--LQLKWLRSQMGLVSQEP--ALFAT 451 (1133)
Q Consensus 376 ~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~--~~~~~~r~~i~~v~Q~~--~l~~~ 451 (1133)
+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .+...+++.++|++|+| .+|..
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 84 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA 84 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence 358999999999999999999999999999999999999999999999999852 22345678899999998 46778
Q ss_pred cHHHHHhcCCC--CCCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeC
Q 041277 452 SIKENILFGKE--DASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDE 525 (1133)
Q Consensus 452 ti~eni~~~~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE 525 (1133)
|++||+.++.. ..+. +++.++++..++.++.++ ...+||||||||++|||||+++|+++||||
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRER-----------PTHCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhC-----------ChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 99999987521 1222 234555555565544433 335899999999999999999999999999
Q ss_pred cccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcch
Q 041277 526 ATSALDSESERVVQEALDKAV-VGRTTIIIAHRLST 560 (1133)
Q Consensus 526 ~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~ 560 (1133)
||++||+.+++.+.+.|++.. +++|+|++||+++.
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 999999999999999998874 48999999999865
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=331.30 Aligned_cols=204 Identities=23% Similarity=0.311 Sum_probs=167.1
Q ss_pred cEEEEEEEEEcCCC-----------------CCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEE
Q 041277 360 EVEFKCVQFAYPSR-----------------PESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIIL 422 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~-----------------~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~ 422 (1133)
.|+++||++.|... ...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 46777777776431 1235899999999999999999999999999999999999999999999
Q ss_pred CCeecCCCCHHHHhhhceEEecCCCCcc-ccHHHHHhcCC--CCCCHHHHHH----HHHHhchHHHHHhCCCcccccccC
Q 041277 423 DGVSIDKLQLKWLRSQMGLVSQEPALFA-TSIKENILFGK--EDASMEEVIE----AAKASNAHNFIRQLPQQYDTQVGE 495 (1133)
Q Consensus 423 ~g~~~~~~~~~~~r~~i~~v~Q~~~l~~-~ti~eni~~~~--~~~~~~~~~~----~~~~~~~~~~i~~l~~g~~t~~~~ 495 (1133)
+|. +++++|++.+++ .|++||+.++. ...+.++..+ +++..++. ..+..
T Consensus 84 ~g~-------------~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~ 139 (264)
T PRK13546 84 NGE-------------VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELG-----------EFIYQ 139 (264)
T ss_pred CCE-------------EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-----------hhhcC
Confidence 984 567888887765 49999997642 1223333322 23333332 33344
Q ss_pred CCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCC
Q 041277 496 RGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDG 573 (1133)
Q Consensus 496 ~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G 573 (1133)
.+.+||||||||++||||++.+|++|||||||++||+.+.+.+.+.+.++. .++|+|++||+++.+.. ||+|++|++|
T Consensus 140 ~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G 219 (264)
T PRK13546 140 PVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGG 219 (264)
T ss_pred CcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECC
Confidence 567899999999999999999999999999999999999999999998764 58999999999999876 9999999999
Q ss_pred eEEeecCcchhccc
Q 041277 574 QVMETGSHDELIQA 587 (1133)
Q Consensus 574 ~i~~~g~~~~l~~~ 587 (1133)
++++.|+++++...
T Consensus 220 ~i~~~g~~~~~~~~ 233 (264)
T PRK13546 220 KLKDYGELDDVLPK 233 (264)
T ss_pred EEEEeCCHHHHHHH
Confidence 99999999998763
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-37 Score=375.48 Aligned_cols=202 Identities=26% Similarity=0.420 Sum_probs=169.0
Q ss_pred CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCC--ccEEEECCeecCCCCHHHHhhhceEEecCCCCccc-c
Q 041277 376 SIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPL--GGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFAT-S 452 (1133)
Q Consensus 376 ~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~--~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-t 452 (1133)
+.+|+|+|+++++||++||+||||||||||+++|+|+.+|+ +|+|.+||+++.. ..++++|||+|++.+++. |
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~----~~~~~i~yv~Q~~~l~~~lT 156 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK----QILKRTGFVTQDDILYPHLT 156 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch----hhccceEEECcccccCCcCC
Confidence 45999999999999999999999999999999999999885 8999999998742 345679999999999864 9
Q ss_pred HHHHHhcCC----C-CCCHHHHHHHHHHhchHHHHHh--CCCcccccccCC-CCCCChHHHHHHHHHHHHhhCCCEEEEe
Q 041277 453 IKENILFGK----E-DASMEEVIEAAKASNAHNFIRQ--LPQQYDTQVGER-GVQMSGGQKQRIAIARAIIKAPRILLLD 524 (1133)
Q Consensus 453 i~eni~~~~----~-~~~~~~~~~~~~~~~~~~~i~~--l~~g~~t~~~~~-g~~LSgGqkqri~iARal~~~~~illlD 524 (1133)
|+||+.++. + ..+.++..+. +++.++. +++..||.+|++ +..||||||||++|||||+++|+||+||
T Consensus 157 V~E~l~~~a~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLD 231 (659)
T PLN03211 157 VRETLVFCSLLRLPKSLTKQEKILV-----AESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 231 (659)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHH-----HHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEe
Confidence 999998752 1 2233322211 1223333 344458888764 6789999999999999999999999999
Q ss_pred CcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcch-h-hcCCEEEEEeCCeEEeecCcchhcc
Q 041277 525 EATSALDSESERVVQEALDKAV-VGRTTIIIAHRLST-I-RNADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 525 E~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
|||++||+.++..+.+.|+++. +|+|+|+++|+++. + +.+|+|++|++|++++.|+++++.+
T Consensus 232 EPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 232 EPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 9999999999999999999875 58999999999984 5 4599999999999999999998854
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=325.85 Aligned_cols=193 Identities=27% Similarity=0.384 Sum_probs=154.2
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
+.++|++.+|+. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...
T Consensus 23 l~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~---------- 89 (224)
T cd03220 23 LGILGRKGEVGE---FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL---------- 89 (224)
T ss_pred hhhhhhhhhcCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh----------
Confidence 667888888864 3599999999999999999999999999999999999999999999999876321
Q ss_pred EEecCCCC-ccccHHHHHhcCCC--CCCHHH----HHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHH
Q 041277 441 LVSQEPAL-FATSIKENILFGKE--DASMEE----VIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARA 513 (1133)
Q Consensus 441 ~v~Q~~~l-~~~ti~eni~~~~~--~~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa 513 (1133)
.+...+ .+.|++||+.++.. ..+.++ +.++++..++.+. ......+||||||||++||||
T Consensus 90 --~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~lara 156 (224)
T cd03220 90 --GLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDF-----------IDLPVKTYSSGMKARLAFAIA 156 (224)
T ss_pred --cccccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCCHHHHHHHHHHHH
Confidence 111222 24699999987532 112222 2233333333222 223345899999999999999
Q ss_pred HhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeec
Q 041277 514 IIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETG 579 (1133)
Q Consensus 514 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 579 (1133)
++++|+++||||||++||+.+++.+.+.+++.. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 157 l~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 157 TALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999999999998864 47899999999998865 9999999999998765
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-37 Score=374.94 Aligned_cols=204 Identities=27% Similarity=0.432 Sum_probs=173.0
Q ss_pred CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCC---ccEEEECCeecCCCCHHHHhhhceEEecCCCCccc
Q 041277 375 ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPL---GGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFAT 451 (1133)
Q Consensus 375 ~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~---~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ 451 (1133)
++++|+|+|+++++||+++|+||||||||||+++|+|..+|. +|+|.+||.++. ...+|+.+|||+|++++++.
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~---~~~~~~~i~yv~Q~~~~~~~ 113 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID---AKEMRAISAYVQQDDLFIPT 113 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC---HHHHhhhceeeccccccCcc
Confidence 456999999999999999999999999999999999999885 799999999875 35678899999999999965
Q ss_pred -cHHHHHhcCCC-----CCCHHHHHHHHHHhchHHHHHh--CCCcccccccCC--CCCCChHHHHHHHHHHHHhhCCCEE
Q 041277 452 -SIKENILFGKE-----DASMEEVIEAAKASNAHNFIRQ--LPQQYDTQVGER--GVQMSGGQKQRIAIARAIIKAPRIL 521 (1133)
Q Consensus 452 -ti~eni~~~~~-----~~~~~~~~~~~~~~~~~~~i~~--l~~g~~t~~~~~--g~~LSgGqkqri~iARal~~~~~il 521 (1133)
||+|||.|+.. ..+.++. ...+++.++. +++..||.+|+. +..||||||||++|||||+.+|+++
T Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~-----~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vl 188 (617)
T TIGR00955 114 LTVREHLMFQAHLRMPRRVTKKEK-----RERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLL 188 (617)
T ss_pred CcHHHHHHHHHhcCCCCCCCHHHH-----HHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEE
Confidence 99999998632 1122221 1122344444 345679999984 4789999999999999999999999
Q ss_pred EEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcc-hh-hcCCEEEEEeCCeEEeecCcchhcc
Q 041277 522 LLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLS-TI-RNADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 522 llDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
+||||||+||+.+...+.+.++++. +|+|+|+++|+++ .+ +.+|++++|++|+++++|+++++.+
T Consensus 189 llDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~ 256 (617)
T TIGR00955 189 FCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVP 256 (617)
T ss_pred EeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHH
Confidence 9999999999999999999999875 4899999999996 44 5699999999999999999998753
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=366.46 Aligned_cols=212 Identities=20% Similarity=0.349 Sum_probs=172.8
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCH-HHHhhh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQL-KWLRSQ 438 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~-~~~r~~ 438 (1133)
.++++|+++.|. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..++++
T Consensus 265 ~l~~~~l~~~~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 339 (510)
T PRK09700 265 VFEVRNVTSRDR-----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG 339 (510)
T ss_pred EEEEeCccccCC-----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCC
Confidence 499999998762 28999999999999999999999999999999999999999999999999866543 356678
Q ss_pred ceEEecCC---CCccc-cHHHHHhcCCCC-----------CCHHHHHHHHHHhchHHHHHhCCCccc-ccccCCCCCCCh
Q 041277 439 MGLVSQEP---ALFAT-SIKENILFGKED-----------ASMEEVIEAAKASNAHNFIRQLPQQYD-TQVGERGVQMSG 502 (1133)
Q Consensus 439 i~~v~Q~~---~l~~~-ti~eni~~~~~~-----------~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSg 502 (1133)
+|||||++ .+++. |++||+.++... ....+. ...+.+.++.+ |+. ........+|||
T Consensus 340 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSg 412 (510)
T PRK09700 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDE-----QRTAENQRELL--ALKCHSVNQNITELSG 412 (510)
T ss_pred cEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHH-----HHHHHHHHHhc--CCCCCCccCccccCCh
Confidence 99999984 56754 999999875320 011111 11123344443 232 234455668999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecC
Q 041277 503 GQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGS 580 (1133)
Q Consensus 503 Gqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 580 (1133)
|||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||++++|++|++++.++
T Consensus 413 Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~ 492 (510)
T PRK09700 413 GNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILT 492 (510)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999999999998864 58999999999998865 99999999999999887
Q ss_pred cch
Q 041277 581 HDE 583 (1133)
Q Consensus 581 ~~~ 583 (1133)
..+
T Consensus 493 ~~~ 495 (510)
T PRK09700 493 NRD 495 (510)
T ss_pred Ccc
Confidence 644
|
|
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-36 Score=316.84 Aligned_cols=188 Identities=22% Similarity=0.388 Sum_probs=157.8
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
++++|++++|++ +.++ ++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.. ++.++
T Consensus 2 l~~~~l~~~~~~---~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~ 73 (195)
T PRK13541 2 LSLHQLQFNIEQ---KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCT 73 (195)
T ss_pred eEEEEeeEEECC---cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEE
Confidence 689999999964 2344 599999999999999999999999999999999999999999999886532 34699
Q ss_pred EEecCCCC-ccccHHHHHhcCCCCC-CHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCC
Q 041277 441 LVSQEPAL-FATSIKENILFGKEDA-SMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAP 518 (1133)
Q Consensus 441 ~v~Q~~~l-~~~ti~eni~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~ 518 (1133)
|++|++.+ +..|++||+.++.+.. ..+++.++++..++.++.. ..+.+||||||||++||||++++|
T Consensus 74 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~~rl~la~al~~~p 142 (195)
T PRK13541 74 YIGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLD-----------EKCYSLSSGMQKIVAIARLIACQS 142 (195)
T ss_pred eccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhc-----------cChhhCCHHHHHHHHHHHHHhcCC
Confidence 99998765 5679999998754321 2345556666666554433 345689999999999999999999
Q ss_pred CEEEEeCcccCCChHHHHHHHHHHHHH-hCCCeEEEEecCcchhhcCCEE
Q 041277 519 RILLLDEATSALDSESERVVQEALDKA-VVGRTTIIIAHRLSTIRNADVI 567 (1133)
Q Consensus 519 ~illlDE~ts~lD~~~~~~i~~~l~~~-~~~~t~i~itH~~~~~~~~d~i 567 (1133)
+++||||||++||+.+++.+.+.+++. .+++|+|++||+++.++.||-+
T Consensus 143 ~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~ 192 (195)
T PRK13541 143 DLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQIL 192 (195)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhhee
Confidence 999999999999999999999999754 4689999999999999999865
|
|
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-36 Score=368.94 Aligned_cols=219 Identities=30% Similarity=0.468 Sum_probs=183.4
Q ss_pred cEEEEEEEEEcCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHH---
Q 041277 360 EVEFKCVQFAYPSRP-ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWL--- 435 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~--- 435 (1133)
.++++|++++|+... .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+++...+.+++
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 489999999996421 2458999999999999999999999999999999999999999999999999998876653
Q ss_pred -hhhceEEecCCCCccc-cHHHHHhcCCC--CCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHH
Q 041277 436 -RSQMGLVSQEPALFAT-SIKENILFGKE--DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIA 511 (1133)
Q Consensus 436 -r~~i~~v~Q~~~l~~~-ti~eni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iA 511 (1133)
|+.++|++|++.+|+. |+.||+.++.. ....++. ...+.+.++.+ |++..+...+.+||||||||++||
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~-----~~~~~~~l~~l--gl~~~~~~~~~~LS~Gq~qrv~LA 156 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQR-----LLRAQELLQRL--GLEDRVEYQPSQLSGGQQQRVSIA 156 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHH-----HHHHHHHHHHC--CChhhhcCCcccCCHHHHHHHHHH
Confidence 5689999999999975 99999986421 1111111 11122334433 344444555678999999999999
Q ss_pred HHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhc
Q 041277 512 RAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELI 585 (1133)
Q Consensus 512 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 585 (1133)
|||+++|+++||||||++||+.+++.+.+.++++. +++|+|++||+++.+..||++++|++|+++++|+.+|..
T Consensus 157 raL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 157 RALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 99999999999999999999999999999998875 589999999999988889999999999999999999875
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=364.47 Aligned_cols=218 Identities=18% Similarity=0.329 Sum_probs=174.3
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCC-CccEEEECCeecCCCCH-HHHhh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP-LGGEIILDGVSIDKLQL-KWLRS 437 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~-~~G~i~~~g~~~~~~~~-~~~r~ 437 (1133)
-++++|++++|+...+..+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++...+. ..+|+
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 48999999999432123589999999999999999999999999999999999995 89999999999865443 45678
Q ss_pred hceEEecCC---CCcc-ccHHHHHhcCCCC-------CCHHHHHHHHHHhchHHHHHhCCCcccc-cccCCCCCCChHHH
Q 041277 438 QMGLVSQEP---ALFA-TSIKENILFGKED-------ASMEEVIEAAKASNAHNFIRQLPQQYDT-QVGERGVQMSGGQK 505 (1133)
Q Consensus 438 ~i~~v~Q~~---~l~~-~ti~eni~~~~~~-------~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~~~~~g~~LSgGqk 505 (1133)
++|||+|++ .+++ .|++||+.++... ...++. ...+.+.++.+ |+.. ........||||||
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqk 409 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAE-----LQIIGSAIQRL--KVKTASPFLPIGRLSGGNQ 409 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHH-----HHHHHHHHHhc--CccCCCccCccccCCHHHH
Confidence 899999996 4665 4999999875310 011111 11122344443 2221 23445568999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcch
Q 041277 506 QRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDE 583 (1133)
Q Consensus 506 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 583 (1133)
||++||||++.+|++|||||||++||+.+.+.+.+.++++. +|+|+|++||+++.+.. ||++++|++|+++..++.++
T Consensus 410 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 489 (500)
T TIGR02633 410 QKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHA 489 (500)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcccc
Confidence 99999999999999999999999999999999999998864 58999999999999876 99999999999998776554
Q ss_pred h
Q 041277 584 L 584 (1133)
Q Consensus 584 l 584 (1133)
+
T Consensus 490 ~ 490 (500)
T TIGR02633 490 L 490 (500)
T ss_pred C
Confidence 3
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-36 Score=337.52 Aligned_cols=183 Identities=34% Similarity=0.561 Sum_probs=154.8
Q ss_pred EEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccc-cHHHHHhcCCC--CCCH----
Q 041277 394 LVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFAT-SIKENILFGKE--DASM---- 466 (1133)
Q Consensus 394 ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eni~~~~~--~~~~---- 466 (1133)
|+||||||||||+++|+|+++|++|+|.++|.++.+.+. .+++++|++|++.+|+. |++||+.|+.. ....
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~ 78 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK 78 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence 689999999999999999999999999999999976654 35789999999999975 99999998642 1122
Q ss_pred HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh
Q 041277 467 EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV 546 (1133)
Q Consensus 467 ~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~ 546 (1133)
+++.++++..++.++.+ ....+||||||||++|||||+++|+++||||||++||+.+++.+.+.|+++.
T Consensus 79 ~~~~~~l~~~~l~~~~~-----------~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~ 147 (325)
T TIGR01187 79 PRVLEALRLVQLEEFAD-----------RKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQ 147 (325)
T ss_pred HHHHHHHHHcCCcchhc-----------CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 23444555555544433 3446899999999999999999999999999999999999999999998874
Q ss_pred --CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhccccc
Q 041277 547 --VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQAES 589 (1133)
Q Consensus 547 --~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 589 (1133)
.++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+...
T Consensus 148 ~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~~~ 193 (325)
T TIGR01187 148 EQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEPA 193 (325)
T ss_pred HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 38999999999998765 99999999999999999999976433
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-36 Score=359.53 Aligned_cols=211 Identities=20% Similarity=0.356 Sum_probs=173.5
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCH-HHHhhh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQL-KWLRSQ 438 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~-~~~r~~ 438 (1133)
-++++|+++ .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. +.+|++
T Consensus 257 ~l~~~~l~~--------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 328 (501)
T PRK10762 257 RLKVDNLSG--------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANG 328 (501)
T ss_pred EEEEeCccc--------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCC
Confidence 488999974 26999999999999999999999999999999999999999999999999876654 345678
Q ss_pred ceEEecCC---CCcc-ccHHHHHhcCCCC--------CCHHHHHHHHHHhchHHHHHhCCCccc-ccccCCCCCCChHHH
Q 041277 439 MGLVSQEP---ALFA-TSIKENILFGKED--------ASMEEVIEAAKASNAHNFIRQLPQQYD-TQVGERGVQMSGGQK 505 (1133)
Q Consensus 439 i~~v~Q~~---~l~~-~ti~eni~~~~~~--------~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGqk 505 (1133)
+|||||++ .++. .|++||+.++... ...++. ...+.++++.+ |+. ........+||||||
T Consensus 329 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgGek 401 (501)
T PRK10762 329 IVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADE-----QQAVSDFIRLF--NIKTPSMEQAIGLLSGGNQ 401 (501)
T ss_pred CEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHH-----HHHHHHHHHhc--CCCCCCccCchhhCCHHHH
Confidence 99999997 3554 5999999875210 011111 11123444443 232 234556678999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcch
Q 041277 506 QRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDE 583 (1133)
Q Consensus 506 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 583 (1133)
||++||||++.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|+++..|+.++
T Consensus 402 qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 481 (501)
T PRK10762 402 QKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQ 481 (501)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecccc
Confidence 99999999999999999999999999999999999999875 58999999999999876 99999999999999998877
Q ss_pred hc
Q 041277 584 LI 585 (1133)
Q Consensus 584 l~ 585 (1133)
+.
T Consensus 482 ~~ 483 (501)
T PRK10762 482 AT 483 (501)
T ss_pred CC
Confidence 63
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=358.91 Aligned_cols=212 Identities=22% Similarity=0.358 Sum_probs=172.9
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCH-HHHhhh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQL-KWLRSQ 438 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~-~~~r~~ 438 (1133)
.++++|+++. .+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ...++.
T Consensus 257 ~l~~~~~~~~-------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 329 (501)
T PRK11288 257 RLRLDGLKGP-------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAG 329 (501)
T ss_pred EEEEeccccC-------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCC
Confidence 4889999742 28999999999999999999999999999999999999999999999999865443 345678
Q ss_pred ceEEecCCC---Ccc-ccHHHHHhcCCCCC--------CHHHHHHHHHHhchHHHHHhCCCccc-ccccCCCCCCChHHH
Q 041277 439 MGLVSQEPA---LFA-TSIKENILFGKEDA--------SMEEVIEAAKASNAHNFIRQLPQQYD-TQVGERGVQMSGGQK 505 (1133)
Q Consensus 439 i~~v~Q~~~---l~~-~ti~eni~~~~~~~--------~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGqk 505 (1133)
++|++|++. +|. .|+.||+.++.... ...+. ...+.++++.+ |++ ........+||||||
T Consensus 330 i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgGq~ 402 (501)
T PRK11288 330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWE-----AENADRFIRSL--NIKTPSREQLIMNLSGGNQ 402 (501)
T ss_pred CEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHH-----HHHHHHHHHhc--CcccCCccCccccCCHHHH
Confidence 999999973 665 69999998753210 11111 01123344443 221 223445568999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcch
Q 041277 506 QRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDE 583 (1133)
Q Consensus 506 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 583 (1133)
||++||||++.+|++|||||||++||+.+.+.+.+.|+++. +|.|+|++||+++.+.. ||++++|++|++++.|+++|
T Consensus 403 qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~ 482 (501)
T PRK11288 403 QKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQ 482 (501)
T ss_pred HHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEcccc
Confidence 99999999999999999999999999999999999998875 48999999999999865 99999999999999999887
Q ss_pred hc
Q 041277 584 LI 585 (1133)
Q Consensus 584 l~ 585 (1133)
..
T Consensus 483 ~~ 484 (501)
T PRK11288 483 AT 484 (501)
T ss_pred CC
Confidence 65
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-36 Score=302.30 Aligned_cols=213 Identities=21% Similarity=0.453 Sum_probs=182.2
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.+++++|+++|++. .+++|+||++++|++.+++||||+||||.+++|+|+++|++|+|.++|.+++. ..+.+|
T Consensus 2 ~L~ie~vtK~Fg~k---~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~----~~~~rI 74 (300)
T COG4152 2 ALEIEGVTKSFGDK---KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKNRI 74 (300)
T ss_pred ceEEecchhccCce---eeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh----hhhhhc
Confidence 47899999999854 49999999999999999999999999999999999999999999999998864 346689
Q ss_pred eEEecCCCCccc-cHHHHHhcCCC--CCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhh
Q 041277 440 GLVSQEPALFAT-SIKENILFGKE--DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIK 516 (1133)
Q Consensus 440 ~~v~Q~~~l~~~-ti~eni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~ 516 (1133)
||.|.+--|+.. ||.|-+.|-.. .....++.+ .+..+++++.- --.-..+..+||-|.+|+|-+--|+++
T Consensus 75 GyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~-----~~~~wLer~~i--~~~~~~kIk~LSKGnqQKIQfisaviH 147 (300)
T COG4152 75 GYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQK-----KLQAWLERLEI--VGKKTKKIKELSKGNQQKIQFISAVIH 147 (300)
T ss_pred ccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHH-----HHHHHHHhccc--cccccchHHHhhhhhhHHHHHHHHHhc
Confidence 999999999975 99999987322 233333322 23456666532 112234556899999999999999999
Q ss_pred CCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 517 APRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 517 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
+|+++|||||+|+|||.+.+.+.+.+.+++ +|.|||+.||+++.++. ||+++.|++|+.|-+|+.+++.+
T Consensus 148 ePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~ 219 (300)
T COG4152 148 EPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRR 219 (300)
T ss_pred CCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHH
Confidence 999999999999999999999999998875 69999999999999987 99999999999999999988865
|
|
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=290.88 Aligned_cols=208 Identities=25% Similarity=0.432 Sum_probs=174.5
Q ss_pred CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCC--cc-c
Q 041277 375 ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPAL--FA-T 451 (1133)
Q Consensus 375 ~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l--~~-~ 451 (1133)
++++|+++|++|++|+++.|+|.||||||||++.|+|-..|++|+|.|||.|+..++.......++-|+|||-. +. .
T Consensus 18 ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~l 97 (263)
T COG1101 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPEL 97 (263)
T ss_pred HHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccc
Confidence 46799999999999999999999999999999999999999999999999999999998888889999999953 54 4
Q ss_pred cHHHHHhcCCCC---CCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCccc
Q 041277 452 SIKENILFGKED---ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATS 528 (1133)
Q Consensus 452 ti~eni~~~~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts 528 (1133)
||.||+.+.... .....-...-......+-+..+|.|++..++.+..-|||||||-++++.|.++.|+||+|||-|+
T Consensus 98 TieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTA 177 (263)
T COG1101 98 TIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTA 177 (263)
T ss_pred cHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhh
Confidence 999999874221 11111111112223345578889999988888888999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHh--CCCeEEEEecCcchh-hcCCEEEEEeCCeEEeecCcc
Q 041277 529 ALDSESERVVQEALDKAV--VGRTTIIIAHRLSTI-RNADVIAVVQDGQVMETGSHD 582 (1133)
Q Consensus 529 ~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~-~~~d~i~~l~~G~i~~~g~~~ 582 (1133)
||||.+.+.+++.-.+.- .+-|.+||||+++.. ...+|.++|++|+|+-+-+-+
T Consensus 178 ALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv~g~ 234 (263)
T COG1101 178 ALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVTGE 234 (263)
T ss_pred cCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEcccc
Confidence 999999999988877653 367999999999875 558999999999999764433
|
|
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=317.66 Aligned_cols=193 Identities=22% Similarity=0.347 Sum_probs=155.3
Q ss_pred EEcCCCCCCccccceeEEee-----CCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEE
Q 041277 368 FAYPSRPESIIFKDFCLTIP-----AGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLV 442 (1133)
Q Consensus 368 ~~y~~~~~~~~l~~i~l~i~-----~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v 442 (1133)
|+|++. .+.++|++|+++ +||+++|+||||||||||+++|+|+++|++|+|.++|. +|+|+
T Consensus 1 ~~y~~~--~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------~i~~~ 66 (246)
T cd03237 1 YTYPTM--KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------TVSYK 66 (246)
T ss_pred CCCccc--ccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------eEEEe
Confidence 567643 247889999887 69999999999999999999999999999999999984 59999
Q ss_pred ecCCCC-ccccHHHHHhcCCCCC--CHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCC
Q 041277 443 SQEPAL-FATSIKENILFGKEDA--SMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPR 519 (1133)
Q Consensus 443 ~Q~~~l-~~~ti~eni~~~~~~~--~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~ 519 (1133)
+|++.. ++.|++||+.+..... ..+...++++..++.+. ......+||||||||++|||||+.+|+
T Consensus 67 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~-----------~~~~~~~LSgGe~qrv~iaraL~~~p~ 135 (246)
T cd03237 67 PQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQI-----------LDREVPELSGGELQRVAIAACLSKDAD 135 (246)
T ss_pred cccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCCHHH-----------hhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 999875 5789999997543211 11223444444444433 233456899999999999999999999
Q ss_pred EEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEE--eecCcchhc
Q 041277 520 ILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVM--ETGSHDELI 585 (1133)
Q Consensus 520 illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~--~~g~~~~l~ 585 (1133)
++||||||++||+.++..+.+.|+++. .++|+|+|||+++.+.. ||+|++|+++..+ ..+++.++.
T Consensus 136 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 206 (246)
T cd03237 136 IYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLR 206 (246)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHH
Confidence 999999999999999999999999874 38999999999999886 9999999765433 445555543
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-35 Score=354.14 Aligned_cols=200 Identities=23% Similarity=0.341 Sum_probs=169.0
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.|+++|++++|+++ .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. +++
T Consensus 319 ~l~~~~l~~~~~~~---~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~i 384 (530)
T PRK15064 319 ALEVENLTKGFDNG---PLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----------ANI 384 (530)
T ss_pred eEEEEeeEEeeCCc---eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----------eEE
Confidence 59999999999743 4899999999999999999999999999999999999999999999873 479
Q ss_pred eEEecCCC--Ccc-ccHHHHHhcCC-CCCCHHHHHHHHHHhchH-HHHHhCCCcccccccCCCCCCChHHHHHHHHHHHH
Q 041277 440 GLVSQEPA--LFA-TSIKENILFGK-EDASMEEVIEAAKASNAH-NFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAI 514 (1133)
Q Consensus 440 ~~v~Q~~~--l~~-~ti~eni~~~~-~~~~~~~~~~~~~~~~~~-~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal 514 (1133)
||++|++. ++. .|++||+.+.. +....+++.+.++..++. +.. .....+||||||||++||||+
T Consensus 385 ~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~~LSgGq~qrv~la~al 453 (530)
T PRK15064 385 GYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDI-----------KKSVKVLSGGEKGRMLFGKLM 453 (530)
T ss_pred EEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHh-----------cCcccccCHHHHHHHHHHHHH
Confidence 99999974 443 59999987532 222344555666665542 222 234468999999999999999
Q ss_pred hhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEE-eecCcchhcc
Q 041277 515 IKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVM-ETGSHDELIQ 586 (1133)
Q Consensus 515 ~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~-~~g~~~~l~~ 586 (1133)
+.+|++|||||||++||+.+.+.+.+.|++. +.|+|+|||+++.+.. ||++++|++|+++ ..|+++++++
T Consensus 454 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~ 525 (530)
T PRK15064 454 MQKPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLR 525 (530)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHH
Confidence 9999999999999999999999999999876 4599999999999876 9999999999998 7888887765
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-35 Score=290.52 Aligned_cols=143 Identities=34% Similarity=0.587 Sum_probs=133.9
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
++++|++++|++. ++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|. ..++
T Consensus 1 l~~~~l~~~~~~~---~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------~~i~ 66 (144)
T cd03221 1 IELENLSKTYGGK---LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIG 66 (144)
T ss_pred CEEEEEEEEECCc---eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------EEEE
Confidence 4789999999743 4899999999999999999999999999999999999999999999994 3699
Q ss_pred EEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCE
Q 041277 441 LVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRI 520 (1133)
Q Consensus 441 ~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~i 520 (1133)
|++| ||+||+||++||||++++|++
T Consensus 67 ~~~~-------------------------------------------------------lS~G~~~rv~laral~~~p~i 91 (144)
T cd03221 67 YFEQ-------------------------------------------------------LSGGEKMRLALAKLLLENPNL 91 (144)
T ss_pred EEcc-------------------------------------------------------CCHHHHHHHHHHHHHhcCCCE
Confidence 9999 999999999999999999999
Q ss_pred EEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCe
Q 041277 521 LLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQ 574 (1133)
Q Consensus 521 lllDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~ 574 (1133)
+||||||++||+.+...+.+.++++ ++|+|++||+++.+.. ||++++|++|+
T Consensus 92 lllDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 92 LLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 9999999999999999999999876 5799999999999876 99999999986
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=319.89 Aligned_cols=201 Identities=21% Similarity=0.260 Sum_probs=158.4
Q ss_pred EEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEE-----------ECCeecCCCCH
Q 041277 364 KCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEII-----------LDGVSIDKLQL 432 (1133)
Q Consensus 364 ~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~-----------~~g~~~~~~~~ 432 (1133)
.||+++|+.. ..+|+|+| .+++||+++|+||||||||||+++|+|+++|++|+|. ++|+++.+...
T Consensus 4 ~~~~~~y~~~--~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~ 80 (255)
T cd03236 4 DEPVHRYGPN--SFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFT 80 (255)
T ss_pred cCcceeecCc--chhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhH
Confidence 3688999643 24899999 4999999999999999999999999999999999996 88888866533
Q ss_pred HHHhh--hceEEecCCCCccccHHHHHhcCCCCCC-HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHH
Q 041277 433 KWLRS--QMGLVSQEPALFATSIKENILFGKEDAS-MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIA 509 (1133)
Q Consensus 433 ~~~r~--~i~~v~Q~~~l~~~ti~eni~~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~ 509 (1133)
...+. .++|++|++.+++.++.+|+........ .+++.++++..++ +......+.+||||||||++
T Consensus 81 ~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LS~G~~qrv~ 149 (255)
T cd03236 81 KLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLEL-----------RHVLDRNIDQLSGGELQRVA 149 (255)
T ss_pred HhhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCC-----------chhhcCChhhCCHHHHHHHH
Confidence 33332 4789999887776666666654321111 2334444444433 33344566789999999999
Q ss_pred HHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeec
Q 041277 510 IARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETG 579 (1133)
Q Consensus 510 iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 579 (1133)
||||++.+|+++||||||++||+.+.+.+.+.++++. +++|+|++||+++.+.. ||+|++| +|++.+.|
T Consensus 150 laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l-~~~~~~~~ 220 (255)
T cd03236 150 IAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCL-YGEPGAYG 220 (255)
T ss_pred HHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE-CCCCCcce
Confidence 9999999999999999999999999999999998875 47999999999999885 9999999 46666544
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-35 Score=352.49 Aligned_cols=212 Identities=19% Similarity=0.323 Sum_probs=172.9
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHH-Hhhh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKW-LRSQ 438 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~-~r~~ 438 (1133)
-++++|+++ . +|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .+++
T Consensus 268 ~l~~~~l~~-----~---~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 339 (510)
T PRK15439 268 VLTVEDLTG-----E---GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARG 339 (510)
T ss_pred eEEEeCCCC-----C---CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 488999983 1 599999999999999999999999999999999999999999999999998766554 4567
Q ss_pred ceEEecCC---CCccc-cHHHHHhcCC----CC-CCHHHHHHHHHHhchHHHHHhCCCccc-ccccCCCCCCChHHHHHH
Q 041277 439 MGLVSQEP---ALFAT-SIKENILFGK----ED-ASMEEVIEAAKASNAHNFIRQLPQQYD-TQVGERGVQMSGGQKQRI 508 (1133)
Q Consensus 439 i~~v~Q~~---~l~~~-ti~eni~~~~----~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGqkqri 508 (1133)
|+|+||++ .+|.. |+.+|+.... .. ....+.. ..+.+.++.+ |+. ........+||||||||+
T Consensus 340 i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgG~kqrl 412 (510)
T PRK15439 340 LVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPAREN-----AVLERYRRAL--NIKFNHAEQAARTLSGGNQQKV 412 (510)
T ss_pred cEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHH-----HHHHHHHHHc--CCCCCCccCccccCCcHHHHHH
Confidence 99999986 36654 9999986321 10 0111111 1123344444 332 234555678999999999
Q ss_pred HHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 509 AIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 509 ~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
+||||++.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||++++|++|+++..|+.+++..
T Consensus 413 ~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 492 (510)
T PRK15439 413 LIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAINV 492 (510)
T ss_pred HHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccCCH
Confidence 99999999999999999999999999999999998874 58999999999999876 99999999999999999988764
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=309.45 Aligned_cols=185 Identities=19% Similarity=0.270 Sum_probs=150.5
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEE-ECCeecCCCCHHHHhhhceEEecCCCCccc-cHHH
Q 041277 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEII-LDGVSIDKLQLKWLRSQMGLVSQEPALFAT-SIKE 455 (1133)
Q Consensus 378 ~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~-~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-ti~e 455 (1133)
+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|. ++|..+ .+.|++.+|+. |++|
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-------------~~~~~~~l~~~ltv~e 68 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-------------PLGANSFILPGLTGEE 68 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-------------ccccccccCCcCcHHH
Confidence 79999999999999999999999999999999999999999997 777532 13356778875 9999
Q ss_pred HHhcCCC--CCCHHHHHHHH-HHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCCh
Q 041277 456 NILFGKE--DASMEEVIEAA-KASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDS 532 (1133)
Q Consensus 456 ni~~~~~--~~~~~~~~~~~-~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~ 532 (1133)
|+.+... ....++..+.+ +.. .+++..++.+ ..||||||||++||||++.+|+++||||||+++|+
T Consensus 69 nl~~~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~~----~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~ 137 (213)
T PRK15177 69 NARMMASLYGLDGDEFSHFCYQLT-------QLEQCYTDRV----SEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDN 137 (213)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHh-------ChhHHhhchH----hhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCH
Confidence 9987422 22333332222 222 2333333333 46999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 533 ESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 533 ~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
.+++.+.+.+.+..+++|+|++||+++.+.. ||++++|++|++++.|+.++..+
T Consensus 138 ~~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 192 (213)
T PRK15177 138 ATQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQATA 192 (213)
T ss_pred HHHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHHH
Confidence 9999999988765567899999999999864 99999999999999998887754
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-35 Score=382.72 Aligned_cols=214 Identities=24% Similarity=0.404 Sum_probs=180.0
Q ss_pred cEEEEEEEEEcCCC-CCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccC---CCccEEEECCeecCCCCHHHH
Q 041277 360 EVEFKCVQFAYPSR-PESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYA---PLGGEIILDGVSIDKLQLKWL 435 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~-~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~---~~~G~i~~~g~~~~~~~~~~~ 435 (1133)
.++++|++++|+.+ .++.+|+|+|+++++||++||+||||||||||+++|+|..+ |++|+|.+||+++. ..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence 37899999999632 23469999999999999999999999999999999999997 78899999999984 246
Q ss_pred hhhceEEecCCCCc-cccHHHHHhcCC----C-CCCHH----HHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHH
Q 041277 436 RSQMGLVSQEPALF-ATSIKENILFGK----E-DASME----EVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQK 505 (1133)
Q Consensus 436 r~~i~~v~Q~~~l~-~~ti~eni~~~~----~-~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 505 (1133)
|+.+|||+|++.++ ..||+||+.++. + ..+.+ ++.++++..++ .+-.|+.+|+.|.+||||||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L-------~~~~d~~v~~~~~~LSgGqr 907 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEM-------ESYADAVVGVPGEGLNVEQR 907 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCC-------hhhCCCeeCCCCCCCCHHHh
Confidence 88899999987655 569999999752 1 12222 23444444443 33468889988889999999
Q ss_pred HHHHHHHHHhhCCC-EEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchh--hcCCEEEEEeCC-eEEeecC
Q 041277 506 QRIAIARAIIKAPR-ILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTI--RNADVIAVVQDG-QVMETGS 580 (1133)
Q Consensus 506 qri~iARal~~~~~-illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~--~~~d~i~~l~~G-~i~~~g~ 580 (1133)
||++|||||+.+|+ ||+||||||+||+.++..+++.|+++. +|+|+|+++|+++.. ..+|++++|++| ++++.|+
T Consensus 908 qRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~ 987 (1394)
T TIGR00956 908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGD 987 (1394)
T ss_pred hHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECC
Confidence 99999999999997 999999999999999999999999874 689999999999963 569999999997 9999999
Q ss_pred cchh
Q 041277 581 HDEL 584 (1133)
Q Consensus 581 ~~~l 584 (1133)
..+.
T Consensus 988 ~~~~ 991 (1394)
T TIGR00956 988 LGEN 991 (1394)
T ss_pred cccc
Confidence 8654
|
|
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=268.56 Aligned_cols=195 Identities=29% Similarity=0.440 Sum_probs=167.4
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCC---ccEEEECCeecCCCCHHHHh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPL---GGEIILDGVSIDKLQLKWLR 436 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~---~G~i~~~g~~~~~~~~~~~r 436 (1133)
.+.++||+.+-+++ ..|-|+||+|.+||++-|.||||||||||+.-+.|.+.++ +|++.+|++++..++.. +
T Consensus 2 ~l~l~nvsl~l~g~---cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~--q 76 (213)
T COG4136 2 MLCLKNVSLRLPGS---CLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA--Q 76 (213)
T ss_pred ceeeeeeeecCCCc---eEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchh--h
Confidence 36789999887754 4899999999999999999999999999999999999885 79999999999887765 5
Q ss_pred hhceEEecCCCCccc-cHHHHHhcCCCC-----CCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHH
Q 041277 437 SQMGLVSQEPALFAT-SIKENILFGKED-----ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAI 510 (1133)
Q Consensus 437 ~~i~~v~Q~~~l~~~-ti~eni~~~~~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~i 510 (1133)
+++|+.+||++||+- +|.+|+.|..|. +.......|+++.+++.+..+.|+ +||||||.||++
T Consensus 77 Rq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~-----------tlSGGQrARvaL 145 (213)
T COG4136 77 RQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPA-----------TLSGGQRARVAL 145 (213)
T ss_pred hheeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChh-----------hcCcchHHHHHH
Confidence 689999999999976 999999998662 334456677888888888888774 899999999999
Q ss_pred HHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHH-H-hCCCeEEEEecCcchhhcCCEEEEE
Q 041277 511 ARAIIKAPRILLLDEATSALDSESERVVQEALDK-A-VVGRTTIIIAHRLSTIRNADVIAVV 570 (1133)
Q Consensus 511 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~-~-~~~~t~i~itH~~~~~~~~d~i~~l 570 (1133)
-|+|+..|+.++||||+|.||..-+..+.+..-. . ..|..+|+|||+.+.+....||+-|
T Consensus 146 ~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVie~ 207 (213)
T COG4136 146 LRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVIEM 207 (213)
T ss_pred HHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeeeee
Confidence 9999999999999999999999988888887654 3 2488999999999988754555443
|
|
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=278.44 Aligned_cols=229 Identities=23% Similarity=0.416 Sum_probs=180.5
Q ss_pred EEEEEEEEEcCCC------CCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHH
Q 041277 361 VEFKCVQFAYPSR------PESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKW 434 (1133)
Q Consensus 361 i~~~~v~~~y~~~------~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~ 434 (1133)
++++|++++|..+ ....+.+.|||++++|+++||+|.||||||||.++|.|..+|++|+|++||+++.--+...
T Consensus 5 LeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~ 84 (267)
T COG4167 5 LEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSF 84 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHh
Confidence 4566776665322 1234789999999999999999999999999999999999999999999999998777777
Q ss_pred HhhhceEEecCCCC-cc-----ccHHHH-HhcC---CCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHH
Q 041277 435 LRSQMGLVSQEPAL-FA-----TSIKEN-ILFG---KEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQ 504 (1133)
Q Consensus 435 ~r~~i~~v~Q~~~l-~~-----~ti~en-i~~~---~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 504 (1133)
..++|-+++|||.- |+ |+|.|- +.+. .+....+++.+.++.+|+. |+--+- ....||-||
T Consensus 85 R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~------Pdhan~----~~~~la~~Q 154 (267)
T COG4167 85 RSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLL------PDHANY----YPHMLAPGQ 154 (267)
T ss_pred hhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccC------cccccc----chhhcCchh
Confidence 77889999999952 32 233221 1111 1233456777778877763 432221 245899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCc
Q 041277 505 KQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSH 581 (1133)
Q Consensus 505 kqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~ 581 (1133)
|||||+||||+-+|+|+|.||+..+||...+.++.+...++. .|..-|.|++++..+++ +|+|+||++|+++|.|++
T Consensus 155 KQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t 234 (267)
T COG4167 155 KQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGST 234 (267)
T ss_pred HHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCCh
Confidence 999999999999999999999999999999999988877664 48899999999999998 999999999999999999
Q ss_pred chhccccc-hhhHHHHHhh
Q 041277 582 DELIQAES-GLYTSLVRLQ 599 (1133)
Q Consensus 582 ~~l~~~~~-~~~~~~~~~~ 599 (1133)
.+++..+. ..-+++++..
T Consensus 235 ~~v~a~P~~~~TkRlieSh 253 (267)
T COG4167 235 ADVLASPLHELTKRLIESH 253 (267)
T ss_pred hhhhcCCccHHHHHHHHHH
Confidence 99987443 3344555443
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=346.61 Aligned_cols=213 Identities=20% Similarity=0.305 Sum_probs=169.5
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHH-HHhhh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLK-WLRSQ 438 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~-~~r~~ 438 (1133)
.|+++|++++| + ++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++...+.. .+++.
T Consensus 250 ~i~~~~l~~~~--~---~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 324 (491)
T PRK10982 250 ILEVRNLTSLR--Q---PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHG 324 (491)
T ss_pred EEEEeCccccc--C---cccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCC
Confidence 58999999974 1 389999999999999999999999999999999999999999999999999776643 34677
Q ss_pred ceEEecCCC---Ccc-ccHHHH-----HhcCCCC---CCHHHHHHHHHHhchHHHHHhCCCccc-ccccCCCCCCChHHH
Q 041277 439 MGLVSQEPA---LFA-TSIKEN-----ILFGKED---ASMEEVIEAAKASNAHNFIRQLPQQYD-TQVGERGVQMSGGQK 505 (1133)
Q Consensus 439 i~~v~Q~~~---l~~-~ti~en-----i~~~~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGqk 505 (1133)
++|++|++. +|. .|+.+| +.+.... ...++..+ .+.+.++.+ |+. ........+||||||
T Consensus 325 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LSgGq~ 397 (491)
T PRK10982 325 FALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKS-----DTQWVIDSM--RVKTPGHRTQIGSLSGGNQ 397 (491)
T ss_pred CEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHH-----HHHHHHHhc--CccCCCcccccccCCcHHH
Confidence 999999963 565 377766 3321111 11111111 122334444 221 123556678999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcch
Q 041277 506 QRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDE 583 (1133)
Q Consensus 506 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 583 (1133)
||++||||++.+|+||||||||++||+.+.+.+.+.++++. +++|+|++||+++.+.. ||++++|++|+++..++.++
T Consensus 398 qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~~ 477 (491)
T PRK10982 398 QKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTKT 477 (491)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEcccc
Confidence 99999999999999999999999999999999999998864 58999999999999875 99999999999998877654
Q ss_pred h
Q 041277 584 L 584 (1133)
Q Consensus 584 l 584 (1133)
+
T Consensus 478 ~ 478 (491)
T PRK10982 478 T 478 (491)
T ss_pred C
Confidence 3
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=347.61 Aligned_cols=207 Identities=22% Similarity=0.301 Sum_probs=164.8
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCC-CccEEEECCeecCC-CCHHHHh
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP-LGGEIILDGVSIDK-LQLKWLR 436 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~-~~G~i~~~g~~~~~-~~~~~~r 436 (1133)
.-++++|++++|+++ .+|+|+||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|.++.. .+....|
T Consensus 259 ~~l~~~~l~~~~~~~---~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~ 335 (490)
T PRK10938 259 PRIVLNNGVVSYNDR---PILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIK 335 (490)
T ss_pred ceEEEeceEEEECCe---eEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHH
Confidence 359999999999743 489999999999999999999999999999999998876 69999999987632 2334467
Q ss_pred hhceEEecCCCCcc---ccHHHHHhcCCC-------CCC---HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChH
Q 041277 437 SQMGLVSQEPALFA---TSIKENILFGKE-------DAS---MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGG 503 (1133)
Q Consensus 437 ~~i~~v~Q~~~l~~---~ti~eni~~~~~-------~~~---~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG 503 (1133)
++|+|++|++.++. .++++++.++.. ... .+++.++++..++.+. .......+||||
T Consensus 336 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG 405 (490)
T PRK10938 336 KHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKR----------TADAPFHSLSWG 405 (490)
T ss_pred hhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchh----------hccCchhhCCHH
Confidence 78999999986642 367777654311 011 1233444444444320 223344689999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CC-CeEEEEecCcchhhc--CCEEEEEeCCeEEee
Q 041277 504 QKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VG-RTTIIIAHRLSTIRN--ADVIAVVQDGQVMET 578 (1133)
Q Consensus 504 qkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~-~t~i~itH~~~~~~~--~d~i~~l~~G~i~~~ 578 (1133)
||||++||||++.+|++|||||||++||+.+.+.+.+.|+++. ++ .|+|++||+++.+.. ||++++|++|++++.
T Consensus 406 q~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 406 QQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRY 484 (490)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEe
Confidence 9999999999999999999999999999999999999999875 34 469999999999863 899999999999864
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-31 Score=279.93 Aligned_cols=380 Identities=18% Similarity=0.245 Sum_probs=286.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHH
Q 041277 722 YAFCFLGLAVFTLVINIIQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTA 801 (1133)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~ 801 (1133)
++..++++.++..+.+.+.......++++...++|.++.++++..|+.-++ +-.+++++.++++|+..|. +-...++
T Consensus 50 ~l~~f~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerie--r~~~~rlla~L~~Dvr~IS-f~~s~lp 126 (546)
T COG4615 50 VLPEFLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIE--RLGSARLLAGLTSDVRNIS-FAFSRLP 126 (546)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH--Hhcccchhhhhccccccee-ehHhhhH
Confidence 444556666666677778888889999999999999999999999999998 4689999999999999998 6667788
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchH
Q 041277 802 LLVQTISAVTIAFTMGLFIAWRLALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQH 881 (1133)
Q Consensus 802 ~~~~~~~~~i~~~~~~~~~~w~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~ 881 (1133)
.+.++.+.++++...+.+.++++.+++++++.+.++..++.+.+..+..+..++...++.++.+-.++|-+..+......
T Consensus 127 ~~~qa~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~ 206 (546)
T COG4615 127 ELVQAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERA 206 (546)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHH
Confidence 89999999999999999999999999998888888888888877777788888888999999999999999988764322
Q ss_pred H--HHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 041277 882 R--ILKMLEKAQQGPRRESIRQSWYAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAG 959 (1133)
Q Consensus 882 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~ 959 (1133)
+ +.++|...-+..++...+..........+.+.+......+++|+.... +.-+......+.+.+.+...|+.++.
T Consensus 207 ~~~h~~~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~lal~~---~w~st~~a~tivlvlLflr~pL~s~v 283 (546)
T COG4615 207 EYVHNNLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALSL---GWASTNVAATIVLVLLFLRTPLLSAV 283 (546)
T ss_pred HHHHhhhcCcchHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ccchhhHHHHHHHHHHHHhhHHHHHH
Confidence 2 223333322222222222222211223344444455555555554433 22222233445566667788999999
Q ss_pred HhHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCC
Q 041277 960 SMTTDIAKGSDAVGSVFAVMDRYTKIEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQS 1039 (1133)
Q Consensus 960 ~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~S 1039 (1133)
...+.+..+.++..+|.++-..++..+ -+.....|+. -.||++||.|+|++. .--+.-||++|+.||.|=|+|.+
T Consensus 284 gilP~l~~AqvA~~kiakle~~~~~a~--~~~~q~~p~~-~~lelrnvrfay~~~--~FhvgPiNl~ikrGelvFliG~N 358 (546)
T COG4615 284 GILPTLLTAQVAFNKIAKLELAPYKAD--FPRPQAFPDW-KTLELRNVRFAYQDN--AFHVGPINLTIKRGELVFLIGGN 358 (546)
T ss_pred hhhhHHHHHHHHHHHHHHhhcCCcccc--CCCCCcCCcc-cceeeeeeeeccCcc--cceecceeeEEecCcEEEEECCC
Confidence 999999999999999998865332211 1111111222 369999999999743 23468899999999999999999
Q ss_pred CCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHc
Q 041277 1040 GSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAA 1118 (1133)
Q Consensus 1040 GSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a 1118 (1133)
||||||+++||.|+|.|++|+|++||.+++.=++++.|+-+|-|+-|-+||+.++ |....++.+.+..-++.-
T Consensus 359 GsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll------~~e~~as~q~i~~~LqrL 431 (546)
T COG4615 359 GSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------GPEGKASPQLIEKWLQRL 431 (546)
T ss_pred CCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh------CCccCCChHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999865 322225666665554443
|
|
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=289.39 Aligned_cols=211 Identities=26% Similarity=0.394 Sum_probs=172.1
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCH-HHHhh
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQL-KWLRS 437 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~-~~~r~ 437 (1133)
.-|+++||+++|.++ ++|+|+|++|++||..+|+||||||||||+++++|.++|++|.+.+.|+....-+. .++|+
T Consensus 30 ~li~l~~v~v~r~gk---~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk 106 (257)
T COG1119 30 PLIELKNVSVRRNGK---KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRK 106 (257)
T ss_pred ceEEecceEEEECCE---eeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHH
Confidence 459999999999754 49999999999999999999999999999999999999999999999999987776 89999
Q ss_pred hceEEecCCC---CccccHHHHHhcCC------C--CCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHH
Q 041277 438 QMGLVSQEPA---LFATSIKENILFGK------E--DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQ 506 (1133)
Q Consensus 438 ~i~~v~Q~~~---l~~~ti~eni~~~~------~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 506 (1133)
+||+|+-+-. .-+.+++|-+.-|. . ..+.++..++. ..++.+ |.....++.-..||-||||
T Consensus 107 ~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~------~lle~~--g~~~la~r~~~~LS~Ge~r 178 (257)
T COG1119 107 RIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQ------WLLELL--GAKHLADRPFGSLSQGEQR 178 (257)
T ss_pred HhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHH------HHHHHc--chhhhccCchhhcCHhHHH
Confidence 9999986432 22457888776432 1 23333332221 112222 2223334445689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC---CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecC
Q 041277 507 RIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVV---GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGS 580 (1133)
Q Consensus 507 ri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~---~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 580 (1133)
|+-|||||+++|++||||||+++||...++.+.+.+.++.. +.|+|+|||+.+.+.. .++++.+++|+++.+|.
T Consensus 179 rvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 179 RVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence 99999999999999999999999999999999999988752 6799999999999876 69999999999998874
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=289.13 Aligned_cols=152 Identities=24% Similarity=0.356 Sum_probs=134.8
Q ss_pred EEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEe
Q 041277 364 KCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVS 443 (1133)
Q Consensus 364 ~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~ 443 (1133)
.|++++|++. .++++ +|++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ++|++
T Consensus 4 ~~l~~~~~~~---~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~------------i~~~~ 67 (177)
T cd03222 4 PDCVKRYGVF---FLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT------------PVYKP 67 (177)
T ss_pred CCeEEEECCE---EEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE------------EEEEc
Confidence 5789999643 47888 49999999999999999999999999999999999999999953 78999
Q ss_pred cCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEE
Q 041277 444 QEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLL 523 (1133)
Q Consensus 444 Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illl 523 (1133)
|++. ||||||||++||||++.+|++++|
T Consensus 68 q~~~----------------------------------------------------LSgGq~qrv~laral~~~p~lllL 95 (177)
T cd03222 68 QYID----------------------------------------------------LSGGELQRVAIAAALLRNATFYLF 95 (177)
T ss_pred ccCC----------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEE
Confidence 8653 999999999999999999999999
Q ss_pred eCcccCCChHHHHHHHHHHHHHh-C-CCeEEEEecCcchhhc-CCEEEEEeCCeEEee--cCcch
Q 041277 524 DEATSALDSESERVVQEALDKAV-V-GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMET--GSHDE 583 (1133)
Q Consensus 524 DE~ts~lD~~~~~~i~~~l~~~~-~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~--g~~~~ 583 (1133)
||||++||+++++.+.+.+.+.. + ++|+|++||+++.+.. ||++++|+++-.+.+ |.+..
T Consensus 96 DEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~~~ 160 (177)
T cd03222 96 DEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPKG 160 (177)
T ss_pred ECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCCcc
Confidence 99999999999999999998864 4 4899999999999885 999999998866533 55543
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=283.91 Aligned_cols=154 Identities=44% Similarity=0.688 Sum_probs=143.9
Q ss_pred EEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEE
Q 041277 363 FKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLV 442 (1133)
Q Consensus 363 ~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v 442 (1133)
++|++|+|++. ++++++||++++|++++|+||||||||||+++|.|+++|++|+|.++|.++.+.....+++.++|+
T Consensus 2 ~~~~~~~~~~~---~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~ 78 (157)
T cd00267 2 IENLSFRYGGR---TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYV 78 (157)
T ss_pred eEEEEEEeCCe---eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEE
Confidence 68999999753 489999999999999999999999999999999999999999999999999877677778889999
Q ss_pred ecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEE
Q 041277 443 SQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILL 522 (1133)
Q Consensus 443 ~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~ill 522 (1133)
+| ||||||||++||||++.+|++++
T Consensus 79 ~q-------------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~i 103 (157)
T cd00267 79 PQ-------------------------------------------------------LSGGQRQRVALARALLLNPDLLL 103 (157)
T ss_pred ee-------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEE
Confidence 99 99999999999999999999999
Q ss_pred EeCcccCCChHHHHHHHHHHHHHhC-CCeEEEEecCcchhhc-CCEEEEEeCCe
Q 041277 523 LDEATSALDSESERVVQEALDKAVV-GRTTIIIAHRLSTIRN-ADVIAVVQDGQ 574 (1133)
Q Consensus 523 lDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~-~d~i~~l~~G~ 574 (1133)
|||||++||++++..+.+.+.+..+ ++|++++||+++.+.. ||+++++++|+
T Consensus 104 lDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 104 LDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 9999999999999999999988654 6899999999999987 79999999975
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-33 Score=340.33 Aligned_cols=202 Identities=24% Similarity=0.356 Sum_probs=163.3
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhh
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 438 (1133)
.-++++|++++|+++ .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ ++ +
T Consensus 323 ~~l~~~~l~~~~~~~---~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~~----------~ 388 (556)
T PRK11819 323 KVIEAENLSKSFGDR---LLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-TV----------K 388 (556)
T ss_pred eEEEEEeEEEEECCe---eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-ce----------E
Confidence 359999999999743 499999999999999999999999999999999999999999999954 21 5
Q ss_pred ceEEecCC-CCcc-ccHHHHHhcCCCCC----CHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHH
Q 041277 439 MGLVSQEP-ALFA-TSIKENILFGKEDA----SMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIAR 512 (1133)
Q Consensus 439 i~~v~Q~~-~l~~-~ti~eni~~~~~~~----~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iAR 512 (1133)
|||+||++ .++. .|++||+.++.... ...+..++++..++.+ ........+||||||||++|||
T Consensus 389 i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~qrv~la~ 458 (556)
T PRK11819 389 LAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKG----------GDQQKKVGVLSGGERNRLHLAK 458 (556)
T ss_pred EEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCCh----------hHhcCchhhCCHHHHHHHHHHH
Confidence 99999997 5665 49999998764211 1122223333333211 1123345689999999999999
Q ss_pred HHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeC-CeEE-eecCcchhcc
Q 041277 513 AIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQD-GQVM-ETGSHDELIQ 586 (1133)
Q Consensus 513 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~-G~i~-~~g~~~~l~~ 586 (1133)
|++.+|++|||||||++||+.+...+.+.|.+.. .|+|+|||+++.+.. ||+|++|++ |++. ..|+++++++
T Consensus 459 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~ 533 (556)
T PRK11819 459 TLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEE 533 (556)
T ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHH
Confidence 9999999999999999999999999999998863 489999999998876 999999996 7876 4677766654
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-33 Score=340.12 Aligned_cols=202 Identities=23% Similarity=0.350 Sum_probs=162.3
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhh
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 438 (1133)
..++++|++++|+++ .+|+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.+++ ++ +
T Consensus 321 ~~l~~~~l~~~~~~~---~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~~----------~ 386 (552)
T TIGR03719 321 KVIEAENLSKGFGDK---LLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-TV----------K 386 (552)
T ss_pred eEEEEeeEEEEECCe---eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-ce----------E
Confidence 359999999999743 499999999999999999999999999999999999999999999954 21 5
Q ss_pred ceEEecCCC-Ccc-ccHHHHHhcCCCC--CC--HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHH
Q 041277 439 MGLVSQEPA-LFA-TSIKENILFGKED--AS--MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIAR 512 (1133)
Q Consensus 439 i~~v~Q~~~-l~~-~ti~eni~~~~~~--~~--~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iAR 512 (1133)
|||++|++. ++. .|++||+.++... .. ..+..+.++..++.+ ........+||||||||++|||
T Consensus 387 i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGe~qrv~la~ 456 (552)
T TIGR03719 387 LAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKG----------SDQQKKVGQLSGGERNRVHLAK 456 (552)
T ss_pred EEEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCCh----------hHhcCchhhCCHHHHHHHHHHH
Confidence 999999973 564 4999999886431 11 112222333333211 1123445689999999999999
Q ss_pred HHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeC-CeEE-eecCcchhcc
Q 041277 513 AIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQD-GQVM-ETGSHDELIQ 586 (1133)
Q Consensus 513 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~-G~i~-~~g~~~~l~~ 586 (1133)
|++.+|++|||||||++||+.+.+.+.+.|+++. .|+|+|||+++.+.. ||+|++|++ |++. ..|+.++..+
T Consensus 457 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~ 531 (552)
T TIGR03719 457 TLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--GCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEE 531 (552)
T ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHH
Confidence 9999999999999999999999999999998873 489999999999876 999999997 5876 4566665543
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-31 Score=347.28 Aligned_cols=215 Identities=25% Similarity=0.393 Sum_probs=176.5
Q ss_pred ccEEEEEEEEEcCCC----------CCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCC--CccEEEECCee
Q 041277 359 GEVEFKCVQFAYPSR----------PESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP--LGGEIILDGVS 426 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~----------~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~--~~G~i~~~g~~ 426 (1133)
..+.++||++..+.. ..+.+|+|+|+++++|+++||+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 866 ~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~ 945 (1470)
T PLN03140 866 LAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFP 945 (1470)
T ss_pred ceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCcc
Confidence 368999999987532 123699999999999999999999999999999999999763 78999999987
Q ss_pred cCCCCHHHHhhhceEEecCCCCccc-cHHHHHhcCC----C-CCCHH----HHHHHHHHhchHHHHHhCCCcccccccCC
Q 041277 427 IDKLQLKWLRSQMGLVSQEPALFAT-SIKENILFGK----E-DASME----EVIEAAKASNAHNFIRQLPQQYDTQVGER 496 (1133)
Q Consensus 427 ~~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eni~~~~----~-~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~ 496 (1133)
..+ ...++.+|||+|++.+++. ||+||+.|+. + ..+.+ .+.+.++..++.+. .++.+|..
T Consensus 946 ~~~---~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~-------~~~~vg~~ 1015 (1470)
T PLN03140 946 KKQ---ETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNL-------KDAIVGLP 1015 (1470)
T ss_pred CCh---HHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhH-------hCCccCCC
Confidence 642 3466789999999888764 9999998742 1 12222 24455555555432 35666654
Q ss_pred C-CCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcch-h-hcCCEEEEEeC
Q 041277 497 G-VQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLST-I-RNADVIAVVQD 572 (1133)
Q Consensus 497 g-~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~-~-~~~d~i~~l~~ 572 (1133)
+ ..||||||||++|||||+.+|+||+||||||+||+.++..+.+.|+++. +|+|+|+++|+++. + ..+|++++|++
T Consensus 1016 ~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~ 1095 (1470)
T PLN03140 1016 GVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1095 (1470)
T ss_pred CCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcC
Confidence 3 5799999999999999999999999999999999999999999999875 58999999999984 4 56999999996
Q ss_pred -CeEEeecCcch
Q 041277 573 -GQVMETGSHDE 583 (1133)
Q Consensus 573 -G~i~~~g~~~~ 583 (1133)
|+++..|+..+
T Consensus 1096 gG~~v~~G~~~~ 1107 (1470)
T PLN03140 1096 GGQVIYSGPLGR 1107 (1470)
T ss_pred CCEEEEECCccc
Confidence 89999998754
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-33 Score=338.17 Aligned_cols=194 Identities=22% Similarity=0.281 Sum_probs=163.5
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
-++++|++++|++ ..|+++||++++||+++|+||||||||||+++|+|+.+|++|+|.++ + ++
T Consensus 340 ~l~~~~ls~~~~~----~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~---~----------~i 402 (590)
T PRK13409 340 LVEYPDLTKKLGD----FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE---L----------KI 402 (590)
T ss_pred EEEEcceEEEECC----EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe---e----------eE
Confidence 4899999999963 25999999999999999999999999999999999999999999986 1 59
Q ss_pred eEEecCCCCc-cccHHHHHhcCCCCCC-HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhC
Q 041277 440 GLVSQEPALF-ATSIKENILFGKEDAS-MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKA 517 (1133)
Q Consensus 440 ~~v~Q~~~l~-~~ti~eni~~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 517 (1133)
+|+||++.++ +.|++||+.++..... ...+.++++..++.+..++ ...+||||||||++|||||+++
T Consensus 403 ~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~-----------~~~~LSGGe~QRvaiAraL~~~ 471 (590)
T PRK13409 403 SYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDK-----------NVKDLSGGELQRVAIAACLSRD 471 (590)
T ss_pred EEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhC-----------CcccCCHHHHHHHHHHHHHhcC
Confidence 9999998764 5699999987532222 2334556666666544433 3458999999999999999999
Q ss_pred CCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcc
Q 041277 518 PRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHD 582 (1133)
Q Consensus 518 ~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 582 (1133)
|++|||||||++||+.++..+.+.|+++. .++|+|+|||+++.+.. ||++++|++ ++...|+..
T Consensus 472 p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~~~ 538 (590)
T PRK13409 472 ADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGHAS 538 (590)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeeecC
Confidence 99999999999999999999999999874 37999999999999876 999999965 887777633
|
|
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=274.70 Aligned_cols=213 Identities=23% Similarity=0.424 Sum_probs=182.4
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECC-eecCCCCHHHH-hh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDG-VSIDKLQLKWL-RS 437 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g-~~~~~~~~~~~-r~ 437 (1133)
.++++||+.+|++- .+|+|+||++.+||.-+|+||||+||||++..|.|-.+|+.|+++++| .|+..++...+ |.
T Consensus 5 iL~~~~vsVsF~GF---~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~ 81 (249)
T COG4674 5 ILYLDGVSVSFGGF---KALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARA 81 (249)
T ss_pred eEEEeceEEEEcce---eeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHh
Confidence 47889999999854 389999999999999999999999999999999999999999999999 99999988776 45
Q ss_pred hceEEecCCCCccc-cHHHHHhcCCCC--------------CCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCCh
Q 041277 438 QMGLVSQEPALFAT-SIKENILFGKED--------------ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSG 502 (1133)
Q Consensus 438 ~i~~v~Q~~~l~~~-ti~eni~~~~~~--------------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSg 502 (1133)
.||-=+|.|..|.. ||+||+.+.... ...+++.+.+...++.+- ...-...||-
T Consensus 82 GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~-----------~~~~A~~LSH 150 (249)
T COG4674 82 GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDE-----------RDRLAALLSH 150 (249)
T ss_pred ccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchh-----------hhhhhhhhcc
Confidence 69999999999976 999999875321 112245555555544432 2233458999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCc
Q 041277 503 GQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSH 581 (1133)
Q Consensus 503 Gqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~ 581 (1133)
||||++.|+.-++++|++|+||||++++-.+.....-+.++.+..++++++|.||+.+++. ||+|-||+.|.+..+|+.
T Consensus 151 GqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsl 230 (249)
T COG4674 151 GQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSL 230 (249)
T ss_pred chhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeecccH
Confidence 9999999999999999999999999999777777778888888889999999999999987 999999999999999999
Q ss_pred chhcc
Q 041277 582 DELIQ 586 (1133)
Q Consensus 582 ~~l~~ 586 (1133)
+++.+
T Consensus 231 d~v~~ 235 (249)
T COG4674 231 DEVQN 235 (249)
T ss_pred HHhhc
Confidence 99865
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-33 Score=343.03 Aligned_cols=199 Identities=28% Similarity=0.399 Sum_probs=162.7
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.|+++|++++|++ +.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. .++
T Consensus 312 ~l~~~~l~~~y~~---~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 377 (638)
T PRK10636 312 LLKMEKVSAGYGD---RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKL 377 (638)
T ss_pred eEEEEeeEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEE
Confidence 5899999999974 34999999999999999999999999999999999999999999999741 269
Q ss_pred eEEecCC--CCcc-ccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhh
Q 041277 440 GLVSQEP--ALFA-TSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIK 516 (1133)
Q Consensus 440 ~~v~Q~~--~l~~-~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~ 516 (1133)
||++|++ .+.. .|+.+++....+....+++.+.++..++.. .........||||||||++||||++.
T Consensus 378 gy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~----------~~~~~~~~~LSgGekqRl~La~~l~~ 447 (638)
T PRK10636 378 GYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQG----------DKVTEETRRFSGGEKARLVLALIVWQ 447 (638)
T ss_pred EEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCCh----------hHhcCchhhCCHHHHHHHHHHHHHhc
Confidence 9999985 3443 488888752122222334444444444321 11223345899999999999999999
Q ss_pred CCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEE-eecCcchh
Q 041277 517 APRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVM-ETGSHDEL 584 (1133)
Q Consensus 517 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~-~~g~~~~l 584 (1133)
+|++|||||||++||+.+...+.+.|.+. . .|+|+|||++..+.. ||+|++|++|+++ ..|++++.
T Consensus 448 ~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-~-gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 515 (638)
T PRK10636 448 RPNLLLLDEPTNHLDLDMRQALTEALIDF-E-GALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDY 515 (638)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHH
Confidence 99999999999999999999999999887 3 499999999999876 9999999999997 67877765
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-33 Score=341.39 Aligned_cols=200 Identities=25% Similarity=0.393 Sum_probs=161.4
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhh
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 438 (1133)
.-++++|++++|++. +.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +.+
T Consensus 507 ~~L~~~~ls~~y~~~--~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~ 573 (718)
T PLN03073 507 PIISFSDASFGYPGG--PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVR 573 (718)
T ss_pred ceEEEEeeEEEeCCC--CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------cee
Confidence 358999999999642 2489999999999999999999999999999999999999999999875 236
Q ss_pred ceEEecCCCCccccHHHHHhc----CCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHH
Q 041277 439 MGLVSQEPALFATSIKENILF----GKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAI 514 (1133)
Q Consensus 439 i~~v~Q~~~l~~~ti~eni~~----~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal 514 (1133)
|||++|++. ...++.+|..+ ..+....+++.++++..++.+.. ......+||||||||++||||+
T Consensus 574 igyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~----------~~~~~~~LSgGqkqRvaLAraL 642 (718)
T PLN03073 574 MAVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGGQKSRVAFAKIT 642 (718)
T ss_pred EEEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHH----------hcCCccccCHHHHHHHHHHHHH
Confidence 999999873 22345455321 11233456666666666654211 1223468999999999999999
Q ss_pred hhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEE-eecCcchh
Q 041277 515 IKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVM-ETGSHDEL 584 (1133)
Q Consensus 515 ~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~-~~g~~~~l 584 (1133)
+.+|++|||||||++||+.+...+.+.+.+. + .|+|+|||++..+.. ||++++|++|+++ ..|++++.
T Consensus 643 ~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-~-gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 643 FKKPHILLLDEPSNHLDLDAVEALIQGLVLF-Q-GGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 9999999999999999999999998888765 3 499999999999876 9999999999998 56776554
|
|
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=276.55 Aligned_cols=214 Identities=28% Similarity=0.417 Sum_probs=182.8
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhc--cCCCccEEEECCeecCCCCHHHH-h
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRF--YAPLGGEIILDGVSIDKLQLKWL-R 436 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~--~~~~~G~i~~~g~~~~~~~~~~~-r 436 (1133)
.++++|++.+-.++ +.+|+++||+|++||+.+|.||||||||||.+.|+|. |++++|+|.+||+||.++++++. |
T Consensus 3 ~L~I~dLhv~v~~~--keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr 80 (251)
T COG0396 3 MLEIKDLHVEVEGK--KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERAR 80 (251)
T ss_pred eeEEeeeEEEecCc--hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHh
Confidence 47899999988643 3599999999999999999999999999999999997 79999999999999999998765 5
Q ss_pred hhceEEecCCCCccc-cHHHHHhcCCCC---------CCHHHHHHHHHHhchHH-HHHhCCCcccccccCCCCCCChHHH
Q 041277 437 SQMGLVSQEPALFAT-SIKENILFGKED---------ASMEEVIEAAKASNAHN-FIRQLPQQYDTQVGERGVQMSGGQK 505 (1133)
Q Consensus 437 ~~i~~v~Q~~~l~~~-ti~eni~~~~~~---------~~~~~~~~~~~~~~~~~-~i~~l~~g~~t~~~~~g~~LSgGqk 505 (1133)
..|.+.+|.|.=++| |+.+-+..+... ...+++.++++..++++ |+++ .++ ..+|||+|
T Consensus 81 ~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R-------~vN---~GFSGGEk 150 (251)
T COG0396 81 AGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLER-------YVN---EGFSGGEK 150 (251)
T ss_pred cCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhc-------ccC---CCcCcchH
Confidence 569999999999988 888887753211 12456667777777766 3322 233 36999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc--CCEEEEEeCCeEEeecCcc
Q 041277 506 QRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN--ADVIAVVQDGQVMETGSHD 582 (1133)
Q Consensus 506 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~--~d~i~~l~~G~i~~~g~~~ 582 (1133)
.|.-|+.+++.+|++.|||||-|+||..+-+.+-+.+..++ +++++++|||.-..+.+ .|++.||-+|+|+..|.+
T Consensus 151 KR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~- 229 (251)
T COG0396 151 KRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP- 229 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-
Confidence 99999999999999999999999999999999999999876 58999999999888876 599999999999999999
Q ss_pred hhcc
Q 041277 583 ELIQ 586 (1133)
Q Consensus 583 ~l~~ 586 (1133)
||..
T Consensus 230 el~~ 233 (251)
T COG0396 230 ELAE 233 (251)
T ss_pred HHHH
Confidence 7754
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-33 Score=341.33 Aligned_cols=199 Identities=24% Similarity=0.412 Sum_probs=160.6
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
-|+++|++++|+++ ++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+ |.++ +|
T Consensus 319 ~l~~~~l~~~~~~~---~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i 384 (635)
T PRK11147 319 VFEMENVNYQIDGK---QLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EV 384 (635)
T ss_pred eEEEeeeEEEECCe---EEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EE
Confidence 48999999999743 4899999999999999999999999999999999999999999998 5332 59
Q ss_pred eEEecCC-CCccc-cHHHHHhcCCCCC--C--HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHH
Q 041277 440 GLVSQEP-ALFAT-SIKENILFGKEDA--S--MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARA 513 (1133)
Q Consensus 440 ~~v~Q~~-~l~~~-ti~eni~~~~~~~--~--~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa 513 (1133)
||++|++ .+++. |+.||+.++.+.. . ..++.+.++..++.. .........||||||||++||||
T Consensus 385 ~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGekqRl~la~a 454 (635)
T PRK11147 385 AYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHP----------KRAMTPVKALSGGERNRLLLARL 454 (635)
T ss_pred EEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCH----------HHHhChhhhCCHHHHHHHHHHHH
Confidence 9999986 46554 9999998754321 1 222333333333211 11223345899999999999999
Q ss_pred HhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEe-CCeEEe-ecCcchh
Q 041277 514 IIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQ-DGQVME-TGSHDEL 584 (1133)
Q Consensus 514 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~-~G~i~~-~g~~~~l 584 (1133)
++.+|++|||||||++||+.+...+.+.+++. +.|+|+|||+.+.+.. ||+|++++ +|++.+ .|++++.
T Consensus 455 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 455 FLKPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence 99999999999999999999999999999876 4599999999999876 99999998 899876 4555543
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=279.08 Aligned_cols=156 Identities=25% Similarity=0.385 Sum_probs=128.2
Q ss_pred CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHH
Q 041277 376 SIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKE 455 (1133)
Q Consensus 376 ~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~e 455 (1133)
.++|+|+||++++|++++|+||||||||||+++++ +++|++.++|.. ... .++.++|++|
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~-~~~----~~~~~~~~~q----------- 67 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFL-PKF----SRNKLIFIDQ----------- 67 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcc-ccc----ccccEEEEhH-----------
Confidence 46899999999999999999999999999999986 368999998752 111 1345888887
Q ss_pred HHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhC--CCEEEEeCcccCCChH
Q 041277 456 NILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKA--PRILLLDEATSALDSE 533 (1133)
Q Consensus 456 ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~--~~illlDE~ts~lD~~ 533 (1133)
.++ ++.++-+.. ...++..+||||||||++||||++++ |+++||||||++||++
T Consensus 68 --------------~~~---------l~~~~L~~~-~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~ 123 (176)
T cd03238 68 --------------LQF---------LIDVGLGYL-TLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQ 123 (176)
T ss_pred --------------HHH---------HHHcCCCcc-ccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHH
Confidence 122 233321111 24556779999999999999999999 9999999999999999
Q ss_pred HHHHHHHHHHHHh-CCCeEEEEecCcchhhcCCEEEEEeCCeE
Q 041277 534 SERVVQEALDKAV-VGRTTIIIAHRLSTIRNADVIAVVQDGQV 575 (1133)
Q Consensus 534 ~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~~l~~G~i 575 (1133)
+.+.+.+.+++.. .|+|+|++||+++.+..||++++|++|+.
T Consensus 124 ~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~~ 166 (176)
T cd03238 124 DINQLLEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGSG 166 (176)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCCC
Confidence 9999999998865 58999999999999888999999977544
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.6e-31 Score=320.63 Aligned_cols=208 Identities=25% Similarity=0.378 Sum_probs=167.3
Q ss_pred CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCC---CccEEEECCeecCCCCHHHHhhhceEEecCCCCccc-
Q 041277 376 SIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP---LGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFAT- 451 (1133)
Q Consensus 376 ~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~---~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~- 451 (1133)
..+|+|+|.-++||+.+.+.||.|||||||+++++|-.+- ..|+|..||++.++... ++.++|++|+...+..
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~DvH~p~l 204 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQDVHFPEL 204 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEecccccccccee
Confidence 3589999999999999999999999999999999998754 25799999999988765 6789999999888865
Q ss_pred cHHHHHhcCC----CCCCHHHHHHHHHHhchHH---HHHhCCCcccccccCCC-CCCChHHHHHHHHHHHHhhCCCEEEE
Q 041277 452 SIKENILFGK----EDASMEEVIEAAKASNAHN---FIRQLPQQYDTQVGERG-VQMSGGQKQRIAIARAIIKAPRILLL 523 (1133)
Q Consensus 452 ti~eni~~~~----~~~~~~~~~~~~~~~~~~~---~i~~l~~g~~t~~~~~g-~~LSgGqkqri~iARal~~~~~illl 523 (1133)
||||-+.|.. +....+++.+-.+.+...| -+-.|.+..||.||.+. ...|||||.||++|-+++.+|+++.+
T Consensus 205 TVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~ 284 (1391)
T KOG0065|consen 205 TVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFW 284 (1391)
T ss_pred EEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeee
Confidence 9999998842 1111111111111111112 13345667899999864 46899999999999999999999999
Q ss_pred eCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcc--hhhcCCEEEEEeCCeEEeecCcchhcc
Q 041277 524 DEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLS--TIRNADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 524 DE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~--~~~~~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
||+|.+||..|.-++.+++++..+ +.|.++.-|+.+ +....|+|++|.+|+++.+|+.++.+.
T Consensus 285 De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~ 351 (1391)
T KOG0065|consen 285 DEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLP 351 (1391)
T ss_pred ecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHH
Confidence 999999999999999999998753 788888888875 456699999999999999999988764
|
|
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-31 Score=255.92 Aligned_cols=227 Identities=26% Similarity=0.437 Sum_probs=181.3
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECC-----eecCCCCHHH
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDG-----VSIDKLQLKW 434 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g-----~~~~~~~~~~ 434 (1133)
-++++++++.|++.. -.+|+||++.|||..+|||+||||||||+++|.+-+.|+.|+|.++- .|+-.++..+
T Consensus 6 LL~V~~lsk~Yg~~~---gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEae 82 (258)
T COG4107 6 LLSVSGLSKLYGPGK---GCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE 82 (258)
T ss_pred ceeehhhhhhhCCCc---CccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHH
Confidence 478899999998653 68999999999999999999999999999999999999999999865 3333444333
Q ss_pred ----HhhhceEEecCCC--C-cc----ccHHHHHh-cCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCCh
Q 041277 435 ----LRSQMGLVSQEPA--L-FA----TSIKENIL-FGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSG 502 (1133)
Q Consensus 435 ----~r~~i~~v~Q~~~--l-~~----~ti~eni~-~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSg 502 (1133)
+|-.-|+|.|+|. | .. +.|-|-+. .|. ..+-++... +.+++++..- ..+.+.+.+.++||
T Consensus 83 RR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~--RHYG~iR~~-----a~~WL~~VEI-~~~RiDD~PrtFSG 154 (258)
T COG4107 83 RRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGA--RHYGNIRAE-----AQDWLEEVEI-DLDRIDDLPRTFSG 154 (258)
T ss_pred HHHHhhhccceeecCccccceeeeccCCccchhHHhhhh--hhhhhHHHH-----HHHHHHhccc-CcccccCcccccch
Confidence 3456899999994 1 11 23433332 122 123333322 2356655432 34567778889999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEEeec
Q 041277 503 GQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETG 579 (1133)
Q Consensus 503 Gqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 579 (1133)
|++||+-|||-|+..|+++++||||.+||...+..+.+.++.+-. +-.+++|||++..++- +||.+||++|+++|.|
T Consensus 155 GMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~G 234 (258)
T COG4107 155 GMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESG 234 (258)
T ss_pred HHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEeccc
Confidence 999999999999999999999999999999999999999988743 7899999999999986 9999999999999999
Q ss_pred CcchhccccchhhHHHHH
Q 041277 580 SHDELIQAESGLYTSLVR 597 (1133)
Q Consensus 580 ~~~~l~~~~~~~~~~~~~ 597 (1133)
-.+.++..+...|.++.-
T Consensus 235 LTDrvLDDP~hPYTQLLV 252 (258)
T COG4107 235 LTDRVLDDPHHPYTQLLV 252 (258)
T ss_pred cccccccCCCCchHHHHH
Confidence 999999878888988754
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-31 Score=274.54 Aligned_cols=188 Identities=30% Similarity=0.439 Sum_probs=156.0
Q ss_pred CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCc--ccc
Q 041277 375 ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALF--ATS 452 (1133)
Q Consensus 375 ~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~--~~t 452 (1133)
..++|+||||++++||.+||||+||||||||+++|+|.|+|++|+|.++|. ++....-..=| +.|
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~-------------v~~li~lg~Gf~pelT 105 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGK-------------VAPLIELGAGFDPELT 105 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcce-------------EehhhhcccCCCcccc
Confidence 346999999999999999999999999999999999999999999999994 33222222223 248
Q ss_pred HHHHHhc-----CCC-CCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCc
Q 041277 453 IKENILF-----GKE-DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEA 526 (1133)
Q Consensus 453 i~eni~~-----~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ 526 (1133)
-||||.+ |.. ..-++.+.+..+-+++.+|++. | ..+.|.|++-|+++|-|.-.+|+|||+||.
T Consensus 106 GreNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~-P----------vktYSSGM~aRLaFsia~~~~pdILllDEv 174 (249)
T COG1134 106 GRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQ-P----------VKTYSSGMYARLAFSVATHVEPDILLLDEV 174 (249)
T ss_pred hHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhC-c----------hhhccHHHHHHHHHhhhhhcCCCEEEEehh
Confidence 9999976 221 1123344556666777777754 3 258999999999999999999999999999
Q ss_pred ccCCChHHHHHHHHHHHHH-hCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 527 TSALDSESERVVQEALDKA-VVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 527 ts~lD~~~~~~i~~~l~~~-~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
.|..|+.=.++=.+.+.+. .+++|+|+|||+++.+++ ||++++|++|+|...|++++..+
T Consensus 175 lavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~ 236 (249)
T COG1134 175 LAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIP 236 (249)
T ss_pred hhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHH
Confidence 9999999877777777776 678999999999999987 99999999999999999999875
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.4e-30 Score=284.59 Aligned_cols=221 Identities=22% Similarity=0.332 Sum_probs=141.9
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEE--CCeecCCCCHHHHh
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIIL--DGVSIDKLQLKWLR 436 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~--~g~~~~~~~~~~~r 436 (1133)
..+.++|++++|.+. .+++|..|++.+|+.+||+|+|||||||+|++|.|-..|..-.+-+ -..++..-....+.
T Consensus 74 ~dvk~~sls~s~~g~---~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~ 150 (614)
T KOG0927|consen 74 RDVKIESLSLSFHGV---ELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQ 150 (614)
T ss_pred ccceeeeeeeccCCc---eeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHH
Confidence 468999999999754 4899999999999999999999999999999999987775443321 11111100000000
Q ss_pred hhceEEecCCCCccccHHHHHhcCCCCCCH---HHHHHHHHHhchH-------HHHHhCCCc-ccccccCCCCCCChHHH
Q 041277 437 SQMGLVSQEPALFATSIKENILFGKEDASM---EEVIEAAKASNAH-------NFIRQLPQQ-YDTQVGERGVQMSGGQK 505 (1133)
Q Consensus 437 ~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~---~~~~~~~~~~~~~-------~~i~~l~~g-~~t~~~~~g~~LSgGqk 505 (1133)
.-+-.+.++..=. .--.|++.-..++... +++.+-+...+.+ ..+..+ | ........-.+||||||
T Consensus 151 ~v~~~~~~e~~rl-e~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~gl--gf~~~m~~k~~~~~SgGwr 227 (614)
T KOG0927|consen 151 AVVMETDHERKRL-EYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGL--GFLSEMQDKKVKDLSGGWR 227 (614)
T ss_pred HHhhhhHHHHHHH-HHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhc--CCCHhHHHHHhhccCchHH
Confidence 0000000000000 0001111111111000 1111111111111 111111 1 12233345578999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCe-EEeecCcch
Q 041277 506 QRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQ-VMETGSHDE 583 (1133)
Q Consensus 506 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~-i~~~g~~~~ 583 (1133)
.|++|||||..+|++|||||||++||.++..-+.+.|.+.... ++++++|.-+++.. |.+|+.|++++ +..+|++++
T Consensus 228 mR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~-~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~Gnydq 306 (614)
T KOG0927|consen 228 MRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI-ILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGNYDQ 306 (614)
T ss_pred HHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc-eEEEEecchhhhhhHhhhhheecccceeeecCCHHH
Confidence 9999999999999999999999999999999999988876443 89999999999987 99999999999 667777766
Q ss_pred hcc
Q 041277 584 LIQ 586 (1133)
Q Consensus 584 l~~ 586 (1133)
...
T Consensus 307 y~~ 309 (614)
T KOG0927|consen 307 YVK 309 (614)
T ss_pred Hhh
Confidence 654
|
|
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-27 Score=263.29 Aligned_cols=432 Identities=15% Similarity=0.185 Sum_probs=279.3
Q ss_pred HHHHHHHHHHHHHHHhCC---chhhccCCCChhHHH---HHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHH
Q 041277 110 RQATRMRARYLKAVLRQD---VGYFDLHVTSTAEVI---TSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLWR 183 (1133)
Q Consensus 110 ~~~~~lr~~~~~~ll~~~---~~~f~~~~~~~G~l~---~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (1133)
+.+-..|.++.+|+.++= ..||.. .+.-|.+- +++|+|+....+...+...++...++-++.+-+.+.-.+-.
T Consensus 183 klaLafrtrL~~h~y~~Y~snqTyY~V-sn~d~~i~n~D~sLTeDI~~Fs~svahLysnLtKP~lDl~l~s~~L~~s~~s 261 (728)
T KOG0064|consen 183 KLALAFRTRLTRHAYDMYLSNQTFYKV-SNLDSVIENADNSLTEDIAKFSDSVAHLYSNLTKPVLDLILISFTLLDSATS 261 (728)
T ss_pred HHHHHHHHHHHHHHHHHHhccCceEEE-ecccchhcCccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhcc
Confidence 344455666666655431 144432 11233333 57999999999888887777766655443332222211111
Q ss_pred HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHH
Q 041277 184 LA----IVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGL 259 (1133)
Q Consensus 184 l~----l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 259 (1133)
.. .+....+.+-..+.+.+..++.++..+.....+.+...-+-.++|-+.|..|+..+.+.++.++..+.......
T Consensus 262 ~g~~~~~~~~lvv~lTa~iLr~~sP~Fg~Lv~eeA~r~g~lr~~Hs~ii~NsEEIAfy~GhkvE~~ql~~sy~~L~~qm~ 341 (728)
T KOG0064|consen 262 VGAAGITLAGLVVYLTAFILRAVSPKFGKLVAEEAARKGYLRYLHSNIITNSEEIAFYGGHKVELTQVDESYNRLVEQMN 341 (728)
T ss_pred ccccchhhhhhHHHHHHHHHHHhCCchhhHHHHHHhhccHHHHHHHHHhccHHHHHhhcccHHHHHHHHHHHHHHHHHHH
Confidence 11 11111111222233444555566666666667777888888999999999999999999888877766554433
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH------------hcCc-------c-HHHHHHHHHHHHHHHHHHHHHH
Q 041277 260 KQGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVM------------YHGA-------Q-GGTVFAVGASIAVGGLALGAGL 318 (1133)
Q Consensus 260 ~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~------------~~~~-------t-~g~~~~~~~~~~~~~~~~~~~~ 318 (1133)
.......+..- -++++ =..|-|.-+++ .+.. + ...+.+.=-.+...+.++..+.
T Consensus 342 li~k~r~~YiMleqF~m-----KYvWsg~GlvmvsiPI~~~t~~s~~~~~~~e~~~srt~~f~t~r~LL~saAdAieRlM 416 (728)
T KOG0064|consen 342 LIFKVRLWYIMLEQFVM-----KYTWSGTGLVMVSIPILTSTLASEGTLQLSEEGNSRTKEFITNRRLLLSAADAIERLM 416 (728)
T ss_pred HHHHHHHHHHHHHHHHH-----HHhhccCceEEEEeeeeecccCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222111111 11111 11222222221 1111 0 1111111123334455667777
Q ss_pred HHHHHHHHHHHHHHHHHHHhcc---C----------CCCCCCC-----Ccccccc-----cccccEEEEEEEEEcCCCCC
Q 041277 319 PNLKYFSEAMAAGERIMEMIKR---V----------PKIDSDS-----MEGEILE-----NVLGEVEFKCVQFAYPSRPE 375 (1133)
Q Consensus 319 ~~~~~~~~~~~a~~ri~~~l~~---~----------~~~~~~~-----~~~~~~~-----~~~~~i~~~~v~~~y~~~~~ 375 (1133)
.....+++-..-..|+++.++. . ++..+.. .++.+.+ .....|.++||-.--|...
T Consensus 417 ssyKeItqLaGyt~Rv~~mf~v~~dv~~g~~~k~~v~e~~~~~~~~e~r~s~~l~~~~~i~~~~gI~lenIpvItP~~~- 495 (728)
T KOG0064|consen 417 SSYKEITQLAGYTNRVFTMFSVLHDVHKGNYNKTAVPEILSSRTIDESRNSNPLPTTDAIRNFNGIILENIPVITPAGD- 495 (728)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhcccccccccCchhhccCccccccCCcCCccchhhcccceEEecCceeccCcc-
Confidence 7777788877888888765421 1 0100000 0000000 1123589999988877542
Q ss_pred CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHH
Q 041277 376 SIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKE 455 (1133)
Q Consensus 376 ~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~e 455 (1133)
.+...+||+|++|-.+.|.||||||||+|.+.|.|++|...|...+-- +.+|-|+||.|+.--||.||
T Consensus 496 -vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~-----------~~~mFYIPQRPYms~gtlRD 563 (728)
T KOG0064|consen 496 -VLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPR-----------PNNIFYIPQRPYMSGGTLRD 563 (728)
T ss_pred -eeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCC-----------CcceEeccCCCccCcCcccc
Confidence 478999999999999999999999999999999999999888776532 23699999999988889999
Q ss_pred HHhcCCC-------CCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCccc
Q 041277 456 NILFGKE-------DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATS 528 (1133)
Q Consensus 456 ni~~~~~-------~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts 528 (1133)
-|.|+.. ..++.+++..++.+.++..++ -..|.|....- -.-||||+|||+++||.++++|+.-+|||+||
T Consensus 564 QIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~q-r~~g~da~~dW-kd~LsgGekQR~~mARm~yHrPkyalLDEcTs 641 (728)
T KOG0064|consen 564 QIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQ-REGGWDAVRDW-KDVLSGGEKQRMGMARMFYHRPKYALLDECTS 641 (728)
T ss_pred eeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHH-hccChhhhccH-HhhccchHHHHHHHHHHHhcCcchhhhhhhhc
Confidence 9998642 567888999999999876554 45566654433 24699999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcC
Q 041277 529 ALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNA 564 (1133)
Q Consensus 529 ~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~ 564 (1133)
|+.++.|..+.++.++. |-+.|-||||++..+.-
T Consensus 642 AvsidvE~~i~~~ak~~--gi~llsithrpslwk~h 675 (728)
T KOG0064|consen 642 AVSIDVEGKIFQAAKDA--GISLLSITHRPSLWKYH 675 (728)
T ss_pred ccccchHHHHHHHHHhc--CceEEEeecCccHHHHH
Confidence 99999999999888764 88999999999887643
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=316.39 Aligned_cols=218 Identities=31% Similarity=0.466 Sum_probs=180.3
Q ss_pred ccEEEEEEEEEcCCCC--CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCC---CccEEEECCeecCCCCHH
Q 041277 359 GEVEFKCVQFAYPSRP--ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP---LGGEIILDGVSIDKLQLK 433 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~---~~G~i~~~g~~~~~~~~~ 433 (1133)
-.++++|++..-++.. .+.+|+|||.+++|||+.||.||||||||||+++|+|-.+. .+|+|++||+. .+.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~---~~~~ 100 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRP---RDSR 100 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCcc---Cchh
Confidence 4688999988876542 46799999999999999999999999999999999999875 78999999943 4566
Q ss_pred HHhhhceEEecCCCCccc-cHHHHHhcCC----CC-CCHH----HHHHHHHHhchHHHHHhCCCcccccccC-CCCCCCh
Q 041277 434 WLRSQMGLVSQEPALFAT-SIKENILFGK----ED-ASME----EVIEAAKASNAHNFIRQLPQQYDTQVGE-RGVQMSG 502 (1133)
Q Consensus 434 ~~r~~i~~v~Q~~~l~~~-ti~eni~~~~----~~-~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~-~g~~LSg 502 (1133)
.+++..|||.||..+++. ||+|++.|.. |. .+.+ .+.+..+..++.+ =-||.+|. ....+||
T Consensus 101 ~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~-------~~~t~ig~~~~rgiSG 173 (613)
T KOG0061|consen 101 SFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEK-------CADTLIGNPGIRGLSG 173 (613)
T ss_pred hhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChh-------hccceecCCCCCcccc
Confidence 788899999999998876 9999998742 21 1222 3333333333321 14677764 3357999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcch-h-hcCCEEEEEeCCeEEeec
Q 041277 503 GQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLST-I-RNADVIAVVQDGQVMETG 579 (1133)
Q Consensus 503 Gqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~-~-~~~d~i~~l~~G~i~~~g 579 (1133)
|||+|++||.-++.||+||+||||||+||+.+...+.+.|+++. +|||||+.=|+++. + ...|++++|.+|+++..|
T Consensus 174 GErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G 253 (613)
T KOG0061|consen 174 GERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSG 253 (613)
T ss_pred chhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEec
Confidence 99999999999999999999999999999999999999999875 59999999999974 3 559999999999999999
Q ss_pred Ccchhcc
Q 041277 580 SHDELIQ 586 (1133)
Q Consensus 580 ~~~~l~~ 586 (1133)
+++++.+
T Consensus 254 ~~~~~~~ 260 (613)
T KOG0061|consen 254 SPRELLE 260 (613)
T ss_pred CHHHHHH
Confidence 9987753
|
|
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=267.69 Aligned_cols=202 Identities=24% Similarity=0.397 Sum_probs=154.0
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEe-cCCCCccc-cHH
Q 041277 377 IIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVS-QEPALFAT-SIK 454 (1133)
Q Consensus 377 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~-Q~~~l~~~-ti~ 454 (1133)
++.+||||+|++|++++++||||+||||++|+|.|+..|++|.|.++|.+-.+-..+.+ +++++|. |...+.-+ -+.
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~-~~~~~v~gqk~ql~Wdlp~~ 116 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYL-RSIGLVMGQKLQLWWDLPAL 116 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHH-HHHHHHhhhhheeeeechhh
Confidence 47899999999999999999999999999999999999999999999988765333333 4565553 33322211 122
Q ss_pred HHHhcCC--CCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCCh
Q 041277 455 ENILFGK--EDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDS 532 (1133)
Q Consensus 455 eni~~~~--~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~ 532 (1133)
|-+.... .+..+++..+-. +.+.+-| +++..+......||-|||.|.-||-||+++|+||+|||||=+||.
T Consensus 117 ds~~v~~~Iy~Ipd~~F~~r~-----~~l~eiL--dl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV 189 (325)
T COG4586 117 DSLEVLKLIYEIPDDEFAERL-----DFLTEIL--DLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDV 189 (325)
T ss_pred hhHHHHHHHHhCCHHHHHHHH-----HHHHHHh--cchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcch
Confidence 2222110 022233322211 1112221 244445555678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 533 ESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 533 ~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
..+..+.+.+++.. ++.||++.||.++.+.. ||||+++++|+++..|+.++|.+
T Consensus 190 ~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~ 246 (325)
T COG4586 190 NAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQE 246 (325)
T ss_pred hHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHH
Confidence 99999999998763 58999999999999876 99999999999999999999865
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.4e-30 Score=255.25 Aligned_cols=136 Identities=40% Similarity=0.714 Sum_probs=121.1
Q ss_pred ccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccc-cHHHHH
Q 041277 379 FKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFAT-SIKENI 457 (1133)
Q Consensus 379 l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eni 457 (1133)
|+|+||++++|++++|+|+||||||||+++|+|.++|++|+|.++|.++...+...+++.++|++|++.++.+ |++||
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 6899999999999999999999999999999999999999999999999998888999999999999999987 69999
Q ss_pred hcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCccc
Q 041277 458 LFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATS 528 (1133)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts 528 (1133)
...+++.++++..++.+ ..++.++.++..||||||||++||||++++|+++||||||+
T Consensus 80 ------~~~~~~~~~l~~l~~~~-------~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 ------ESDERIEEVLKKLGLED-------LLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp ------HHHHHHHHHHHHTTHGG-------GTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ------ccccccccccccccccc-------ccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 22445666666655433 34667777888999999999999999999999999999996
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-29 Score=245.40 Aligned_cols=188 Identities=23% Similarity=0.422 Sum_probs=157.1
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
++.+|++..-+ +..++.++||++.+||.+-|.||||||||||+++|+|+.+|++|+|+++|.+++... +..++..-
T Consensus 3 L~a~~L~~~R~---e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~-~~~~~~l~ 78 (209)
T COG4133 3 LEAENLSCERG---ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR-ESYHQALL 78 (209)
T ss_pred chhhhhhhccC---cceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccch-hhHHHHHH
Confidence 34566665544 345899999999999999999999999999999999999999999999999887654 33466788
Q ss_pred EEecCCCCccc-cHHHHHhcCCC---CCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhh
Q 041277 441 LVSQEPALFAT-SIKENILFGKE---DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIK 516 (1133)
Q Consensus 441 ~v~Q~~~l~~~-ti~eni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~ 516 (1133)
|+.-.+-+=.. |+.||+.|-.. ..+.+.+++|+..+++.++ +.+|- .+||-|||+|+||||-.+.
T Consensus 79 yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~-~dlp~----------~~LSAGQqRRvAlArL~ls 147 (209)
T COG4133 79 YLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGL-EDLPV----------GQLSAGQQRRVALARLWLS 147 (209)
T ss_pred HhhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccc-cccch----------hhcchhHHHHHHHHHHHcC
Confidence 88888877654 99999998543 1356789999999998764 44553 3799999999999999999
Q ss_pred CCCEEEEeCcccCCChHHHHHHHHHHHHH-hCCCeEEEEecCcchhhc
Q 041277 517 APRILLLDEATSALDSESERVVQEALDKA-VVGRTTIIIAHRLSTIRN 563 (1133)
Q Consensus 517 ~~~illlDE~ts~lD~~~~~~i~~~l~~~-~~~~t~i~itH~~~~~~~ 563 (1133)
.+|+.|||||+++||.+....+...+... .+|-.||..||..--+..
T Consensus 148 ~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~~ 195 (209)
T COG4133 148 PAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIAS 195 (209)
T ss_pred CCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCCc
Confidence 99999999999999999999999988765 468899999998765543
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.5e-28 Score=284.03 Aligned_cols=203 Identities=29% Similarity=0.420 Sum_probs=169.2
Q ss_pred cccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhh
Q 041277 358 LGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRS 437 (1133)
Q Consensus 358 ~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~ 437 (1133)
+.-++++|++++|++. +.+++++||.|.+|+.+||+||||+|||||+++|+|...|.+|+|.+.-. +
T Consensus 319 ~~vl~~~~~~~~y~~~--~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-v---------- 385 (530)
T COG0488 319 KLVLEFENVSKGYDGG--RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-V---------- 385 (530)
T ss_pred CeeEEEeccccccCCC--ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-e----------
Confidence 3458999999999753 46899999999999999999999999999999999999999999987542 2
Q ss_pred hceEEecCC-CCcc-ccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHh
Q 041277 438 QMGLVSQEP-ALFA-TSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAII 515 (1133)
Q Consensus 438 ~i~~v~Q~~-~l~~-~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~ 515 (1133)
++||.+|+. .++. .|+.|++.-..++..+.++...+...+....-. ......||||||-|+.+|+.++
T Consensus 386 ~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~----------~~~v~~LSGGEk~Rl~La~ll~ 455 (530)
T COG0488 386 KIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQ----------EKPVGVLSGGEKARLLLAKLLL 455 (530)
T ss_pred EEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHH----------hCchhhcCHhHHHHHHHHHHhc
Confidence 699999987 4443 499999987665555667777776665433221 2234579999999999999999
Q ss_pred hCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEee-cCcchhcc
Q 041277 516 KAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMET-GSHDELIQ 586 (1133)
Q Consensus 516 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~-g~~~~l~~ 586 (1133)
.+|.+|||||||+.||.++...+.++|... .-|+|+||||..++.. |++|+.+++ ++... |++++..+
T Consensus 456 ~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f--~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~ 525 (530)
T COG0488 456 QPPNLLLLDEPTNHLDIESLEALEEALLDF--EGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLE 525 (530)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHH
Confidence 999999999999999999999999999876 4699999999999987 999999998 66655 66666543
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-28 Score=264.86 Aligned_cols=191 Identities=21% Similarity=0.309 Sum_probs=126.3
Q ss_pred CccccceeEEeeCCCEEEEEcCCCCcHHHHH-HHHHhccCCCccEEEECC-------eecCCC---CHHHHh-hhceEEe
Q 041277 376 SIIFKDFCLTIPAGKTVALVGGSGSGKSTVI-ALLQRFYAPLGGEIILDG-------VSIDKL---QLKWLR-SQMGLVS 443 (1133)
Q Consensus 376 ~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll-~~l~~~~~~~~G~i~~~g-------~~~~~~---~~~~~r-~~i~~v~ 443 (1133)
.++|+|+||+|++||+++|+||||||||||+ ..+. .+|++.+.+ ..+... .....+ ...++..
T Consensus 8 ~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (226)
T cd03270 8 EHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIY-----AEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAI 82 (226)
T ss_pred hhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHH-----HHHHHHHhhcccchhhhhhcccCccccccccCCCceEEe
Confidence 4589999999999999999999999999996 4432 134332210 001000 001111 1234455
Q ss_pred cCCCC-cc--ccH---HHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccc-cccCCCCCCChHHHHHHHHHHHHhh
Q 041277 444 QEPAL-FA--TSI---KENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDT-QVGERGVQMSGGQKQRIAIARAIIK 516 (1133)
Q Consensus 444 Q~~~l-~~--~ti---~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~~~~~g~~LSgGqkqri~iARal~~ 516 (1133)
|++.. .+ .++ .+...+-......++..+ . .+.++.+ |+.. .......+||||||||++||||++.
T Consensus 83 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~---~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~laral~~ 154 (226)
T cd03270 83 DQKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRE---R---LGFLVDV--GLGYLTLSRSAPTLSGGEAQRIRLATQIGS 154 (226)
T ss_pred cCCCCCCCCCccHHHHHHHHHHHHHHhhhhhHHH---H---HHHHHHC--CCCcccccCccCcCCHHHHHHHHHHHHHHh
Confidence 54431 11 122 222211000000000110 0 1223333 2222 2456677999999999999999999
Q ss_pred CC--CEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhcCCEEEEE------eCCeEEeec
Q 041277 517 AP--RILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRNADVIAVV------QDGQVMETG 579 (1133)
Q Consensus 517 ~~--~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~~l------~~G~i~~~g 579 (1133)
+| +++||||||++||+.+...+.+.++++. +|.|+|+|||+++.+..||+|++| ++|+|+++|
T Consensus 155 ~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 155 GLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred CCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 98 5999999999999999999999998864 589999999999998889999999 999999986
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-28 Score=234.79 Aligned_cols=202 Identities=29% Similarity=0.368 Sum_probs=147.6
Q ss_pred cEEEEEEEEEcC----CCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCe----ecCCCC
Q 041277 360 EVEFKCVQFAYP----SRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGV----SIDKLQ 431 (1133)
Q Consensus 360 ~i~~~~v~~~y~----~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~----~~~~~~ 431 (1133)
.+.++|++++|. +.-.-+|++|+||+++.||++++-||||||||||+++|-+-|.|++|+|.+.-. |+....
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~ 83 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence 367788877763 112346999999999999999999999999999999999999999999998532 333333
Q ss_pred HH---H-HhhhceEEecCCCCccc-c----HHHHHh-cCCCC-CCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCC
Q 041277 432 LK---W-LRSQMGLVSQEPALFAT-S----IKENIL-FGKED-ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQM 500 (1133)
Q Consensus 432 ~~---~-~r~~i~~v~Q~~~l~~~-t----i~eni~-~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~L 500 (1133)
+. . .|+.||||+|--...+. + +.|-+. .|-+. ...++....+.+.++.+-+-+|| +.++
T Consensus 84 pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~La----------PaTF 153 (235)
T COG4778 84 PREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLA----------PATF 153 (235)
T ss_pred hHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCC----------Cccc
Confidence 32 2 34569999996433322 2 233322 23221 11122222333333333333333 4689
Q ss_pred ChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEe
Q 041277 501 SGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQ 571 (1133)
Q Consensus 501 SgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~ 571 (1133)
||||+||+.|||.++.|-+||+|||||++||..+++.+.+.|.+.+ +|..+|=|=||-+.-+. |||++-|.
T Consensus 154 SGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~ 226 (235)
T COG4778 154 SGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVS 226 (235)
T ss_pred CCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeecc
Confidence 9999999999999999999999999999999999999999998764 68999999999766555 99998774
|
|
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.6e-28 Score=260.24 Aligned_cols=193 Identities=26% Similarity=0.406 Sum_probs=140.2
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHH-----hc-c----CCCcc-----------EEEECCeecCCCCHH---
Q 041277 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQ-----RF-Y----APLGG-----------EIILDGVSIDKLQLK--- 433 (1133)
Q Consensus 378 ~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~-----~~-~----~~~~G-----------~i~~~g~~~~~~~~~--- 433 (1133)
.|+|+|++|+.|++++|.|+||||||||++.++ +. . .|..+ -|.+|..++..-+..
T Consensus 10 nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~~ 89 (261)
T cd03271 10 NLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNPA 89 (261)
T ss_pred cCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcHH
Confidence 599999999999999999999999999998663 21 1 13222 356666665432111
Q ss_pred -------HHhh----------------hceEEecCCCC-ccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcc
Q 041277 434 -------WLRS----------------QMGLVSQEPAL-FATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQY 489 (1133)
Q Consensus 434 -------~~r~----------------~i~~v~Q~~~l-~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~ 489 (1133)
.+|+ .+.|..++... .+.|+.||+.|.......++..++ ++.+ |+
T Consensus 90 ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~~~---------L~~v--gL 158 (261)
T cd03271 90 TYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKLQT---------LCDV--GL 158 (261)
T ss_pred HHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHHHH---------HHHc--CC
Confidence 1111 13444444433 244777777653221112222223 3333 33
Q ss_pred cc-cccCCCCCCChHHHHHHHHHHHHhhC---CCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhcC
Q 041277 490 DT-QVGERGVQMSGGQKQRIAIARAIIKA---PRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRNA 564 (1133)
Q Consensus 490 ~t-~~~~~g~~LSgGqkqri~iARal~~~---~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~ 564 (1133)
+. ..++...+||||||||++|||||+++ |+++||||||++||++..+.+.+.++++. +|.|+|+|+|+++.++.|
T Consensus 159 ~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~a 238 (261)
T cd03271 159 GYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCA 238 (261)
T ss_pred chhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhC
Confidence 33 35677789999999999999999996 79999999999999999999999998875 589999999999999889
Q ss_pred CEEEEE------eCCeEEeecCc
Q 041277 565 DVIAVV------QDGQVMETGSH 581 (1133)
Q Consensus 565 d~i~~l------~~G~i~~~g~~ 581 (1133)
|++++| ++|+|+++|++
T Consensus 239 D~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 239 DWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred CEEEEecCCcCCCCCEEEEeCCC
Confidence 999999 89999999974
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.8e-28 Score=252.54 Aligned_cols=164 Identities=26% Similarity=0.316 Sum_probs=131.3
Q ss_pred cceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCc---------cEEEECCeecCCCCHHHHhhhceEEecCCCCcc
Q 041277 380 KDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLG---------GEIILDGVSIDKLQLKWLRSQMGLVSQEPALFA 450 (1133)
Q Consensus 380 ~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~---------G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~ 450 (1133)
+++++++++| +++|+||||||||||+++|.++..|.. |++.++|+++... ..++++++|+|+|..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~vfq~~~~~- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKP---ANFAEVTLTFDNSDGR- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCC---CceEEEEEEEEcCCCc-
Confidence 6789999999 999999999999999999999986653 4677788766432 2356899999999887
Q ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHh----hCCCEEEEeCc
Q 041277 451 TSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAII----KAPRILLLDEA 526 (1133)
Q Consensus 451 ~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~----~~~~illlDE~ 526 (1133)
|+.. ..+++.++++. ++- ......+||||||||++||||++ .+|++++||||
T Consensus 89 --------~~~~--~~~~~~~~l~~----------~~~----~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP 144 (197)
T cd03278 89 --------YSII--SQGDVSEIIEA----------PGK----KVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEV 144 (197)
T ss_pred --------eeEE--ehhhHHHHHhC----------CCc----cccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCC
Confidence 2211 12333333333 111 12344689999999999999996 56799999999
Q ss_pred ccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeC
Q 041277 527 TSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQD 572 (1133)
Q Consensus 527 ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~ 572 (1133)
|++||+.....+.+.|++..++.|+|++||+++.+..||+++.+..
T Consensus 145 ~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~~~d~v~~~~~ 190 (197)
T cd03278 145 DAALDDANVERFARLLKEFSKETQFIVITHRKGTMEAADRLYGVTM 190 (197)
T ss_pred cccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHhhcceEEEEEe
Confidence 9999999999999999988778999999999998888999999864
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-23 Score=244.01 Aligned_cols=392 Identities=14% Similarity=0.132 Sum_probs=289.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChh------HHHHHHHhhHHHHHHH
Q 041277 722 YAFCFLGLAVFTLVINIIQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSG------AICSRLAKDANVVRSL 795 (1133)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G------~l~~r~s~D~~~i~~~ 795 (1133)
.+.+|.+++.+..+....+.|+......++-.-|-+.+.++-+...-.|+. +..| ..=.|+..|+...-+.
T Consensus 88 ~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l---~~~~~~~~~dNpDQRi~eDi~~~t~~ 164 (604)
T COG4178 88 QLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRL---AQAGGIGLIDNPDQRIQEDIRNFTET 164 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHH---HhcccccCCCChHHhHHHHHHHHHhh
Confidence 345566666777777778888888888888888888888888887744443 2333 2348999999988887
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHH---------------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 796 VGDRTALLVQTISAVTIAFTMGL---------------FIAWRLALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAES 860 (1133)
Q Consensus 796 ~~~~~~~~~~~~~~~i~~~~~~~---------------~~~w~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 (1133)
.......++.++++++.-.+++. .+...+.+++++.+++.-++.++.++.+.+..-+..+..+..
T Consensus 165 t~~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~f 244 (604)
T COG4178 165 TLDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADF 244 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHH
Confidence 77777777777777766555554 233344455566666666666677777777777777777777
Q ss_pred HHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHH
Q 041277 861 SKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSWYAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKA 940 (1133)
Q Consensus 861 ~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~ 940 (1133)
.....-.-++...|-.|+.|+.+.++.++..+...+...+.......+..+......+...+-+..++-....|.++.|+
T Consensus 245 R~~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~G~ 324 (604)
T COG4178 245 RYSLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGG 324 (604)
T ss_pred HHHHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChHHH
Confidence 77777777888899999999888777666655554444444444333444444444444444444556667889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCC--CCCCCCCCC--CCC---CCCcccEEEEeEEEECCC
Q 041277 941 LFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRYT--KIEPEDPEG--HQP---ERITGNIELQNVHFAYPA 1013 (1133)
Q Consensus 941 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~--~~~~~~~~~--~~~---~~~~g~I~f~nVsF~Y~~ 1013 (1133)
++............++-+...+..+..-.+...|+.++.+... +.+++.+.. ... ...+..|+|+|++..-|+
T Consensus 325 lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~ 404 (604)
T COG4178 325 LMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPD 404 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCC
Confidence 9988888888888888888899999999999999988864322 111111111 000 001478999999999975
Q ss_pred CCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhccccccccccccccc
Q 041277 1014 RPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGT 1093 (1133)
Q Consensus 1014 ~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gT 1093 (1133)
. .+.|+++||.|+|||.+-|.|+||||||||+++|.|+|+..+|+|-.= . -+.+-++||.|++=.||
T Consensus 405 ~--~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P----~-------~~~~lflpQ~PY~p~Gt 471 (604)
T COG4178 405 G--QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMP----A-------DSALLFLPQRPYLPQGT 471 (604)
T ss_pred C--CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecC----C-------CCceEEecCCCCCCCcc
Confidence 4 367999999999999999999999999999999999999988887542 0 14588999999999999
Q ss_pred HHHHhccCCCC-CCCHHHHHHHHHHcchHHHHhhccc
Q 041277 1094 IRENIAYGASD-EIDESEIVEAAKAANAHDFIAGLNE 1129 (1133)
Q Consensus 1094 IreNI~~g~~~-~~sdeei~~Al~~a~l~dfI~~LP~ 1129 (1133)
+||=|.|-++. +.+|+|+.+++.+|++.+++++|.+
T Consensus 472 Lre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~ 508 (604)
T COG4178 472 LREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDE 508 (604)
T ss_pred HHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhc
Confidence 99999996543 3899999999999999999998753
|
|
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-27 Score=299.72 Aligned_cols=215 Identities=23% Similarity=0.392 Sum_probs=186.2
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCC-CHHHHhh
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKL-QLKWLRS 437 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~-~~~~~r~ 437 (1133)
..+..+|+++.|+.... +.+++|+.|++||+.|+.|+|||||||++++|.|..+|++|++.++|.++..- +....++
T Consensus 563 ~~~~~~~L~k~y~~~~~--Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~ 640 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDG--AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRK 640 (885)
T ss_pred ceEEEcceeeeecchhh--hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhh
Confidence 45889999999986532 89999999999999999999999999999999999999999999999999754 4456889
Q ss_pred hceEEecCCCCccc-cHHHHHhcC-----CCCCC-HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHH
Q 041277 438 QMGLVSQEPALFAT-SIKENILFG-----KEDAS-MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAI 510 (1133)
Q Consensus 438 ~i~~v~Q~~~l~~~-ti~eni~~~-----~~~~~-~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~i 510 (1133)
++||+||+..++.. |.||.+.+. .+..+ .+.+.+.++..++.++.... ..++|||+|+|+++
T Consensus 641 ~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~-----------~~~ySgG~kRkLs~ 709 (885)
T KOG0059|consen 641 QLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQ-----------VRTYSGGNKRRLSF 709 (885)
T ss_pred hcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccc-----------hhhCCCcchhhHHH
Confidence 99999999998876 999999763 22222 23356666666666554432 24899999999999
Q ss_pred HHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC-CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 511 ARAIIKAPRILLLDEATSALDSESERVVQEALDKAVV-GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 511 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
|-|++.+|++++|||||+|+||.+++.+++.+.+..+ ++.+|+.||.++..+. |||+.+|.+|++..-|++++|..
T Consensus 710 aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKs 787 (885)
T KOG0059|consen 710 AIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKS 787 (885)
T ss_pred HHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHh
Confidence 9999999999999999999999999999999999876 4599999999999987 99999999999999999999965
|
|
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-27 Score=228.76 Aligned_cols=207 Identities=25% Similarity=0.411 Sum_probs=174.3
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
++++||+.+- -|-.+|.++..||.+-+|||||||||||+..++|+. |-+|+|.++|.++..++..++.++=+
T Consensus 4 ~qln~v~~~t-------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRA 75 (248)
T COG4138 4 MQLNDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRA 75 (248)
T ss_pred eeeccccccc-------cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHH
Confidence 5667776432 367799999999999999999999999999999976 67899999999999999999999999
Q ss_pred EEecCC-CCccccHHHHHhcCCCCCC-HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhh--
Q 041277 441 LVSQEP-ALFATSIKENILFGKEDAS-MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIK-- 516 (1133)
Q Consensus 441 ~v~Q~~-~l~~~ti~eni~~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~-- 516 (1133)
|..|+. ..|..-|...+.+..|..+ ..++.+.|.+.++ +..++..-.+|||||-||+-+|-.+++
T Consensus 76 YLsQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l-----------~DKL~Rs~~qLSGGEWQRVRLAav~LQv~ 144 (248)
T COG4138 76 YLSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALAL-----------DDKLGRSTNQLSGGEWQRVRLAAVVLQIT 144 (248)
T ss_pred HHhhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhhcc-----------cchhhhhhhhcCcccceeeEEeEEEEEec
Confidence 998865 5688899999998877422 2334444544443 444555667999999999999988876
Q ss_pred ---CC--CEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcc-hhhcCCEEEEEeCCeEEeecCcchhcc
Q 041277 517 ---AP--RILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLS-TIRNADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 517 ---~~--~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~-~~~~~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
|| ++||+|||.++||...+..+...|.++. .|.+|||..||++ ++++||++..++.|++..+|..+|.+.
T Consensus 145 Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt 221 (248)
T COG4138 145 PDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLT 221 (248)
T ss_pred CCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcC
Confidence 33 7999999999999999999988888875 6999999999997 688999999999999999999999987
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.7e-26 Score=252.84 Aligned_cols=130 Identities=25% Similarity=0.461 Sum_probs=119.8
Q ss_pred ccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhc
Q 041277 1000 GNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRH 1079 (1133)
Q Consensus 1000 g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~ 1079 (1133)
|+|+|+||+|+|++. +.++|+|+||+|++||++|||||||||||||+++|+|+++ .+|+|+|||+|+..+++.++|++
T Consensus 1 g~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~ 78 (275)
T cd03289 1 GQMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKA 78 (275)
T ss_pred CeEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhh
Confidence 579999999999632 3469999999999999999999999999999999999998 78999999999999999999999
Q ss_pred ccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1080 IALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1080 isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
|+||||+|.+|++|+++|+++.. ..++++++++++.+++++++.++|+||||
T Consensus 79 i~~v~q~~~lf~~tv~~nl~~~~--~~~~~~~~~~l~~~gL~~~~~~~p~~l~~ 130 (275)
T cd03289 79 FGVIPQKVFIFSGTFRKNLDPYG--KWSDEEIWKVAEEVGLKSVIEQFPGQLDF 130 (275)
T ss_pred EEEECCCcccchhhHHHHhhhcc--CCCHHHHHHHHHHcCCHHHHHhCcccccc
Confidence 99999999999999999996432 35788999999999999999999999875
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.5e-26 Score=245.42 Aligned_cols=192 Identities=17% Similarity=0.156 Sum_probs=139.0
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEee-CCCEEEEEcCCCCcHHHHHHHHHh-ccCCCccEEEECCeecCCCCHHHHhh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIP-AGKTVALVGGSGSGKSTVIALLQR-FYAPLGGEIILDGVSIDKLQLKWLRS 437 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~-~g~~~~ivG~sGsGKSTll~~l~~-~~~~~~G~i~~~g~~~~~~~~~~~r~ 437 (1133)
.|+++|+. +|.++ ++++|+.. +|++++|+||||||||||+++|.+ +|.+..+....+ .....+.....+.
T Consensus 5 ~i~l~nf~-~y~~~------~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~~~~~~ 76 (213)
T cd03279 5 KLELKNFG-PFREE------QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAPGEDTA 76 (213)
T ss_pred EEEEECCc-CcCCc------eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcCCCccE
Confidence 58889887 76432 56777654 599999999999999999999994 666665655543 1112223334456
Q ss_pred hceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCC-cccccccCCCCCCChHHHHHHHHHHHHhh
Q 041277 438 QMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQ-QYDTQVGERGVQMSGGQKQRIAIARAIIK 516 (1133)
Q Consensus 438 ~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~-g~~t~~~~~g~~LSgGqkqri~iARal~~ 516 (1133)
.|++++|++...-. +..+. ..+.++..+... ++. ++++.+...+.+||||||||++||||++.
T Consensus 77 ~v~~~f~~~~~~~~----~~r~~--gl~~~~~~~~~~----------l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~ 140 (213)
T cd03279 77 EVSFTFQLGGKKYR----VERSR--GLDYDQFTRIVL----------LPQGEFDRFLARPVSTLSGGETFLASLSLALAL 140 (213)
T ss_pred EEEEEEEECCeEEE----EEEec--CCCHHHHHHhhh----------hhhcchHHHhcCCccccCHHHHHHHHHHHHHHh
Confidence 79999998743221 11221 233343333210 111 13444556677999999999999999985
Q ss_pred ----------CCCEEEEeCcccCCChHHHHHHHHHHHHHhC-CCeEEEEecCcchhhc-CCEEEEEeCCeE
Q 041277 517 ----------APRILLLDEATSALDSESERVVQEALDKAVV-GRTTIIIAHRLSTIRN-ADVIAVVQDGQV 575 (1133)
Q Consensus 517 ----------~~~illlDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i 575 (1133)
+|+++||||||++||+.+.+.+.+.+.++.+ ++|+|+|||+++.+.. ||+++++++|.+
T Consensus 141 ~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 141 SEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred HHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 6789999999999999999999999988764 8899999999998876 899999999853
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.8e-26 Score=250.20 Aligned_cols=191 Identities=25% Similarity=0.302 Sum_probs=130.4
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHh----------------ccCCCcc------
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQR----------------FYAPLGG------ 418 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~----------------~~~~~~G------ 418 (1133)
|+++|. ++|++. .++++++ |++++|+||||||||||+++|.+ +..+.+|
T Consensus 4 i~~~nf-ksy~~~---~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~ 74 (243)
T cd03272 4 VIIQGF-KSYKDQ---TVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSA 74 (243)
T ss_pred EEEeCc-cCcccC---cccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceE
Confidence 566653 346532 3777776 88999999999999999999984 3444555
Q ss_pred --EEEECCeecCC-C--CHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHH--HhCCCc---
Q 041277 419 --EIILDGVSIDK-L--QLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFI--RQLPQQ--- 488 (1133)
Q Consensus 419 --~i~~~g~~~~~-~--~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i--~~l~~g--- 488 (1133)
+|.+++.+-.. . ....+++++++++|++.++.. ..+.+++...++..++...- ...++|
T Consensus 75 ~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~-----------~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~ 143 (243)
T cd03272 75 YVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKK-----------NVTKNDVMNLLESAGFSRSNPYYIVPQGKIN 143 (243)
T ss_pred EEEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCe-----------EcCHHHHHHHHHHcCCCCCCCcEEEEcCchH
Confidence 55555432110 0 112345667888877766542 12233333333333321100 000111
Q ss_pred ----ccccccCCCCCCChHHHHHHHHHHHHhh----CCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcch
Q 041277 489 ----YDTQVGERGVQMSGGQKQRIAIARAIIK----APRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLST 560 (1133)
Q Consensus 489 ----~~t~~~~~g~~LSgGqkqri~iARal~~----~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~ 560 (1133)
......+++.+||||||||++||||++. +|+++||||||++||+.+.+.+.+.++++.+++|+|+++|+.+.
T Consensus 144 ~l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~~ 223 (243)
T cd03272 144 SLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPEL 223 (243)
T ss_pred HhhhccccccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 1222456678999999999999999973 68999999999999999999999999988778888999999877
Q ss_pred hhcCCEEEEEe
Q 041277 561 IRNADVIAVVQ 571 (1133)
Q Consensus 561 ~~~~d~i~~l~ 571 (1133)
.+.||++++|+
T Consensus 224 ~~~~d~i~~l~ 234 (243)
T cd03272 224 LEVADKFYGVK 234 (243)
T ss_pred HhhCCEEEEEE
Confidence 77799999985
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-22 Score=225.36 Aligned_cols=272 Identities=19% Similarity=0.297 Sum_probs=227.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 37 VLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACFLEGYCWTRTGERQATRMR 116 (1133)
Q Consensus 37 ~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 116 (1133)
+++++++++.++..++.|++++.++|.+.... .. ...........++++.++...+.....+...+.+.++..++|
T Consensus 2 ~l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 77 (275)
T PF00664_consen 2 FLAILLSILSGLLSLLFPLLLGQIIDSLSSGN---SD-NNSSLISLAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKDLR 77 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTT---SC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---cc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666777777889999999754331 10 011111122222233334444555555556788999999999
Q ss_pred HHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 041277 117 ARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLWRLAIVGFPFVVLLV 196 (1133)
Q Consensus 117 ~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~ 196 (1133)
.++++|++++|.++|++ + ++|++++|+++|++.+++.+.+.+..++..+..++++++++++++|+++++.+++.|+..
T Consensus 78 ~~~~~~~~~~~~~~~~~-~-~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~~~~~ 155 (275)
T PF00664_consen 78 KRLFEKLLRLPYSYFDK-N-SSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFFISWKLALILLIILPLLF 155 (275)
T ss_dssp HHHHHHHHHSHHHHHHH-S--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhh-h-cccccccccccccccccccccccccccccccchhhhhhhcccccccccccccchhhhhhH
Confidence 99999999999999996 6 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 041277 197 IPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGLKQGLAKGLAIG-SNGVT 275 (1133)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 275 (1133)
++...+.++.++..++.++..++..+.+.|.++|+++||+|++|+.+.+++++..++..+...+.....+...+ ...+.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (275)
T PF00664_consen 156 LISFIFSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFIS 235 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888888888 77777
Q ss_pred HHHHHHHHHHHHHH-HHhcCccHHHHHHHHHHHHHHHHHH
Q 041277 276 FGIWSFLCYYGSRM-VMYHGAQGGTVFAVGASIAVGGLAL 314 (1133)
Q Consensus 276 ~~~~~~~~~~g~~~-v~~~~~t~g~~~~~~~~~~~~~~~~ 314 (1133)
.+..++++++|+++ +.+|.+++|++++++.+......|+
T Consensus 236 ~~~~~~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~pl 275 (275)
T PF00664_consen 236 YLSIVLILIFGAYLSVINGQISIGTLVAFLSLSSQLINPL 275 (275)
T ss_dssp HHHHHHHHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhhC
Confidence 77788899999999 9999999999999888887776653
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A. |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7e-25 Score=250.85 Aligned_cols=213 Identities=23% Similarity=0.365 Sum_probs=171.6
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCH-HHHhhh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQL-KWLRSQ 438 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~-~~~r~~ 438 (1133)
.++++|++.. ..++|+||++++||+++|.|--|||+|-++++|.|..++.+|+|.+||+++.-.++ +..+..
T Consensus 263 ~l~v~~l~~~-------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~G 335 (500)
T COG1129 263 VLEVRNLSGG-------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAG 335 (500)
T ss_pred EEEEecCCCC-------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcC
Confidence 4667776532 14799999999999999999999999999999999999999999999999887765 467888
Q ss_pred ceEEecCCC---Cc-cccHHHHHhcCCC-CCCHH-HHHHHHHHhchHHHHHhCCC---cccccccCCCCCCChHHHHHHH
Q 041277 439 MGLVSQEPA---LF-ATSIKENILFGKE-DASME-EVIEAAKASNAHNFIRQLPQ---QYDTQVGERGVQMSGGQKQRIA 509 (1133)
Q Consensus 439 i~~v~Q~~~---l~-~~ti~eni~~~~~-~~~~~-~~~~~~~~~~~~~~i~~l~~---g~~t~~~~~g~~LSgGqkqri~ 509 (1133)
|+|||.|-. +| ..+|++|+.+..- ..... -+....+.....+++.+|.- +.+. ...+||||-+|++.
T Consensus 336 i~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~----~v~~LSGGNQQKVv 411 (500)
T COG1129 336 IAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQ----PIGTLSGGNQQKVV 411 (500)
T ss_pred CEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccc----hhhcCCchhhhhHH
Confidence 999999853 55 4599999987621 11100 12333333444556665532 2333 34589999999999
Q ss_pred HHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhh-cCCEEEEEeCCeEEeecCcch
Q 041277 510 IARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIR-NADVIAVVQDGQVMETGSHDE 583 (1133)
Q Consensus 510 iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~ 583 (1133)
|||.|..+|++|||||||-++|.-++.+|.+.|+++. +|+++|+||-.+..+. .||||+||++|+|+.+=+.++
T Consensus 412 larwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~~ 487 (500)
T COG1129 412 LARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDREE 487 (500)
T ss_pred HHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEecccc
Confidence 9999999999999999999999999999999999875 6999999999999876 599999999999998666555
|
|
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.2e-25 Score=243.39 Aligned_cols=182 Identities=18% Similarity=0.263 Sum_probs=134.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhccCCC-ccEEEECCe-ecCCCC-H-HHHhhhceEEecCCC---------Cc-cccHH
Q 041277 389 GKTVALVGGSGSGKSTVIALLQRFYAPL-GGEIILDGV-SIDKLQ-L-KWLRSQMGLVSQEPA---------LF-ATSIK 454 (1133)
Q Consensus 389 g~~~~ivG~sGsGKSTll~~l~~~~~~~-~G~i~~~g~-~~~~~~-~-~~~r~~i~~v~Q~~~---------l~-~~ti~ 454 (1133)
..+++||||||||||||+++|++++.+. .|+++..|. ++-... . ...+.++++++|++. +. ..||.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 5599999999999999999999999886 568888776 432111 1 122348999999962 22 34788
Q ss_pred HHHhcCCC--------CCCHHHHHHHHHHhchHH----H------HHhCCCcccccccCCCCCCChHHHHHHHHHHHHh-
Q 041277 455 ENILFGKE--------DASMEEVIEAAKASNAHN----F------IRQLPQQYDTQVGERGVQMSGGQKQRIAIARAII- 515 (1133)
Q Consensus 455 eni~~~~~--------~~~~~~~~~~~~~~~~~~----~------i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~- 515 (1133)
+|+..+.. ....+++.++++.+++.- + +.++-+ ..........+||||||||++||||++
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~-~~~~~~~~~~~lS~G~~qr~~la~al~~ 183 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLN-MGGVWKESLTELSGGQRSLVALSLILAL 183 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHH-hHHhhcccccccCHHHHHHHHHHHHHHH
Confidence 88765431 123456666666666530 0 000000 002234456789999999999999998
Q ss_pred ---hCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEe
Q 041277 516 ---KAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQ 571 (1133)
Q Consensus 516 ---~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~ 571 (1133)
.+|+++||||||++||+.+.+.+.+.++++.+|.|+|+|||+.+.+..||+++-+.
T Consensus 184 ~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~~d~v~~~~ 242 (251)
T cd03273 184 LLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFNNANVLFRTR 242 (251)
T ss_pred hhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 57899999999999999999999999998877899999999988888899998774
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.1e-24 Score=238.63 Aligned_cols=188 Identities=23% Similarity=0.361 Sum_probs=135.2
Q ss_pred cccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCee--cCCCCHHHH
Q 041277 358 LGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVS--IDKLQLKWL 435 (1133)
Q Consensus 358 ~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~--~~~~~~~~~ 435 (1133)
..+|..+|.+.+|+++ ..|++-++++..|..+|+||+||+|||||+++|.. |.|..-..+ +......
T Consensus 78 ~~Di~~~~fdLa~G~k---~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~veqE~~g~~t~-- 146 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYGGK---ILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVEQEVRGDDTE-- 146 (582)
T ss_pred ccceeeeeeeeeecch---hhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCchhheeccchH--
Confidence 4578999999999854 48999999999999999999999999999999997 444322211 1100000
Q ss_pred hhhceEEecCCCCccccHHHHHhcCCC---CC-CHHHHHH-HHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHH
Q 041277 436 RSQMGLVSQEPALFATSIKENILFGKE---DA-SMEEVIE-AAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAI 510 (1133)
Q Consensus 436 r~~i~~v~Q~~~l~~~ti~eni~~~~~---~~-~~~~~~~-~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~i 510 (1133)
..| ..+-.++-+.-+..-.+ .. +.+++.. +++-.+..+.....|- ..||||-|-|++|
T Consensus 147 ------~~~-~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt----------~slSGGWrMrlaL 209 (582)
T KOG0062|consen 147 ------ALQ-SVLESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPT----------KSLSGGWRMRLAL 209 (582)
T ss_pred ------HHh-hhhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccc----------cccCcchhhHHHH
Confidence 001 11223333333322111 01 3344444 5555666666666553 5899999999999
Q ss_pred HHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeE
Q 041277 511 ARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQV 575 (1133)
Q Consensus 511 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i 575 (1133)
||||..+||||||||||+.||..+-.-+.+.|..+. .|+|+|+|+-.++.. |..|+.+++-|+
T Consensus 210 ARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~--~T~liVSHDr~FLn~V~tdIIH~~~~kL 273 (582)
T KOG0062|consen 210 ARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWK--ITSLIVSHDRNFLNTVCTDIIHLENLKL 273 (582)
T ss_pred HHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhCC--ceEEEEeccHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999999999999988888887753 899999999999987 888888876443
|
|
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.3e-25 Score=232.10 Aligned_cols=163 Identities=26% Similarity=0.278 Sum_probs=127.7
Q ss_pred eeEEeeCCCEEEEEcCCCCcHHHHHHHHH----hccCCCccEEEECCeecCCCCHHHHhhhceEEecCC-----CCccc-
Q 041277 382 FCLTIPAGKTVALVGGSGSGKSTVIALLQ----RFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEP-----ALFAT- 451 (1133)
Q Consensus 382 i~l~i~~g~~~~ivG~sGsGKSTll~~l~----~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~-----~l~~~- 451 (1133)
.++++.+| +++|+||||||||||+++|. |...|..|.+.-+...+.. ...+..+++++|++ .+...
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~---~~~~~~v~~~f~~~~~~~~~v~r~~ 91 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIRE---GEVRAQVKLAFENANGKKYTITRSL 91 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhC---CCCcEEEEEEEEeCCCCEEEEEEEh
Confidence 34566677 99999999999999999994 8888888877622222222 23356799999998 33332
Q ss_pred cHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHH------HHHHHHHhhCCCEEEEeC
Q 041277 452 SIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQR------IAIARAIIKAPRILLLDE 525 (1133)
Q Consensus 452 ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqr------i~iARal~~~~~illlDE 525 (1133)
|+.||+.++. .+++.+ .+ .+...+||+||||| ++||||++.+|++++|||
T Consensus 92 ~~~~~~~~~~----~~~~~~---------~~-----------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDE 147 (204)
T cd03240 92 AILENVIFCH----QGESNW---------PL-----------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDE 147 (204)
T ss_pred hHhhceeeec----hHHHHH---------HH-----------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcC
Confidence 9999998752 222221 12 23346899999996 799999999999999999
Q ss_pred cccCCChHHHH-HHHHHHHHHhC--CCeEEEEecCcchhhcCCEEEEEeC
Q 041277 526 ATSALDSESER-VVQEALDKAVV--GRTTIIIAHRLSTIRNADVIAVVQD 572 (1133)
Q Consensus 526 ~ts~lD~~~~~-~i~~~l~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~ 572 (1133)
||++||+.+.. .+.+.++++.+ ++|+|++||+++.+..||++++|++
T Consensus 148 P~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~ 197 (204)
T cd03240 148 PTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEK 197 (204)
T ss_pred CccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEee
Confidence 99999999999 99999988764 7899999999998888999999964
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.6e-25 Score=247.34 Aligned_cols=194 Identities=27% Similarity=0.394 Sum_probs=163.5
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhh
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 438 (1133)
..|.++||+|.|++++ .+++++||-|..++.+|+|||||+|||||++++.|...|+.|.|.-.-+. .
T Consensus 388 pvi~~~nv~F~y~~~~--~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~-----------~ 454 (614)
T KOG0927|consen 388 PVIMVQNVSFGYSDNP--MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHN-----------K 454 (614)
T ss_pred CeEEEeccccCCCCcc--hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccc-----------c
Confidence 4589999999998654 58999999999999999999999999999999999999999999765433 3
Q ss_pred ceEEecCC---CCccccHHHHHhcCCC-CCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHH
Q 041277 439 MGLVSQEP---ALFATSIKENILFGKE-DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAI 514 (1133)
Q Consensus 439 i~~v~Q~~---~l~~~ti~eni~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal 514 (1133)
+++-.|+. ..++.+.-|+++=-.+ ....+++...+...|+....+..|- .+||+|||.||++||.+
T Consensus 455 ~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~----------~~LS~Gqr~rVlFa~l~ 524 (614)
T KOG0927|consen 455 LPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPM----------SQLSDGQRRRVLFARLA 524 (614)
T ss_pred chhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccch----------hhcccccchhHHHHHHH
Confidence 44444543 3456688888864334 3566778888888888766555552 58999999999999999
Q ss_pred hhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEe
Q 041277 515 IKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVME 577 (1133)
Q Consensus 515 ~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~ 577 (1133)
++.|.||+|||||++||.++-....++|.+. .-++|+|+|+...+.+ |++|.+.+||.+..
T Consensus 525 ~kqP~lLlLDEPtnhLDi~tid~laeaiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~ 586 (614)
T KOG0927|consen 525 VKQPHLLLLDEPTNHLDIETIDALAEAINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVTK 586 (614)
T ss_pred hcCCcEEEecCCCcCCCchhHHHHHHHHhcc--CCceeeeechhhHHHHHHHHhHhhccCceee
Confidence 9999999999999999999999999999876 4589999999999987 99999999998864
|
|
| >PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-21 Score=217.05 Aligned_cols=273 Identities=21% Similarity=0.387 Sum_probs=232.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 680 TLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINIIQHYNFAYMGEHLTKRIRERM 759 (1133)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l 759 (1133)
++++++.++.++..+..|++++.+++.....+.. .......+...++++.++...+.....+...+.+.++..++|.++
T Consensus 2 ~l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 80 (275)
T PF00664_consen 2 FLAILLSILSGLLSLLFPLLLGQIIDSLSSGNSD-NNSSLISLAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKDLRKRL 80 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTSC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777888888999988874332211 111111222223333444455555556667889999999999999
Q ss_pred HHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 041277 760 LSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWRLALVMIAVQPLVIICF 839 (1133)
Q Consensus 760 ~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~w~l~lv~l~~~pl~~~~~ 839 (1133)
++|+++.|.+||+ ++++|++++|+++|++.+++.+...+..++..+..+++.+++++.++|++++++++..|+..+..
T Consensus 81 ~~~~~~~~~~~~~--~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~~~~~~~~ 158 (275)
T PF00664_consen 81 FEKLLRLPYSYFD--KNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFFISWKLALILLIILPLLFLIS 158 (275)
T ss_dssp HHHHHHSHHHHHH--HS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhh--hhcccccccccccccccccccccccccccccccchhhhhhhcccccccccccccchhhhhhHhhh
Confidence 9999999999998 58999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 840 YARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSWYAGIGLAFSQSLASCT 919 (1133)
Q Consensus 840 ~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 919 (1133)
....++.++..++..+..++..+.+.|.++|+++||+|+.|+++.++|++..++..+...+..........+...+..+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (275)
T PF00664_consen 159 FIFSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFISYLS 238 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHH
Q 041277 920 WALDFWYGGRL-IADGYISSKALFETFMILVSTGRVI 955 (1133)
Q Consensus 920 ~~~~~~~g~~l-~~~g~~t~g~l~~~~~~~~~~~~~~ 955 (1133)
.++++++|+++ +..|.+++|++++++.+......|+
T Consensus 239 ~~~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~pl 275 (275)
T PF00664_consen 239 IVLILIFGAYLSVINGQISIGTLVAFLSLSSQLINPL 275 (275)
T ss_dssp HHHHHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhhC
Confidence 99999999999 9999999999999998888776664
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A. |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.5e-25 Score=267.58 Aligned_cols=200 Identities=27% Similarity=0.407 Sum_probs=166.6
Q ss_pred CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccC--CCccEEEECCeecCCCCHHHHhhhceEEecCCC-Cccc
Q 041277 375 ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYA--PLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPA-LFAT 451 (1133)
Q Consensus 375 ~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~--~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~-l~~~ 451 (1133)
.+.+|+||+=-++||..+||+|+|||||||||+.|+|=.. ..+|+|+|||.+..+ +..++.+|||.|+.. +-.-
T Consensus 803 ~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~~ 879 (1391)
T KOG0065|consen 803 TRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPEL 879 (1391)
T ss_pred ceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCccc
Confidence 3568999999999999999999999999999999998532 257999999998764 567889999999764 4455
Q ss_pred cHHHHHhcCC----C-CCCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCC-CEE
Q 041277 452 SIKENILFGK----E-DASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAP-RIL 521 (1133)
Q Consensus 452 ti~eni~~~~----~-~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~-~il 521 (1133)
||||-+.|.. | +.+. +-++++.+..++.++- |..||.-|..||..||+|+.||=-|+.|| .||
T Consensus 880 TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~-------daiVG~~G~GLs~eQRKrLTIgVELvA~P~~il 952 (1391)
T KOG0065|consen 880 TVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYA-------DALVGLPGSGLSTEQRKRLTIGVELVANPSSIL 952 (1391)
T ss_pred chHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhh-------hhhccCCCCCCCHHHhceeeEEEEEecCCceeE
Confidence 9999998852 2 2222 3355666666555443 45688888999999999999999999999 899
Q ss_pred EEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcch--hhcCCEEEEEe-CCeEEeecCcchh
Q 041277 522 LLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLST--IRNADVIAVVQ-DGQVMETGSHDEL 584 (1133)
Q Consensus 522 llDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~--~~~~d~i~~l~-~G~i~~~g~~~~l 584 (1133)
+|||||||||+++...|++.++++. .|+||++.-|+++. .+..|+++.|+ .|+.+..|+..+-
T Consensus 953 FLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~ 1019 (1391)
T KOG0065|consen 953 FLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGEN 1019 (1391)
T ss_pred EecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccc
Confidence 9999999999999999999999975 69999999999985 46799999996 5799999987653
|
|
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.91 E-value=9e-25 Score=231.95 Aligned_cols=184 Identities=19% Similarity=0.230 Sum_probs=133.2
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHh-hh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLR-SQ 438 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r-~~ 438 (1133)
.|+++|.. +|++. .+++++++ ++++|+|||||||||++++|.. ++|.+.. ..| ++
T Consensus 5 ~l~l~nfk-~~~~~---~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~----------~~G~~~~-----~~~~~~ 60 (212)
T cd03274 5 KLVLENFK-SYAGE---QVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLF----------VFGFRAS-----KMRQKK 60 (212)
T ss_pred EEEEECcc-cCCCC---eeeccCCC-----CeEEEECCCCCCHHHHHHHHHH----------HhccCHH-----Hhhhhh
Confidence 46777765 67543 48898887 8999999999999999999972 3443331 223 57
Q ss_pred ceEEecCCCCccc-cHHHHHhcCCCCCCHHHH-----HHHH-H----HhchHHHHHhCCCcccccccCCCCCCChHHHHH
Q 041277 439 MGLVSQEPALFAT-SIKENILFGKEDASMEEV-----IEAA-K----ASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQR 507 (1133)
Q Consensus 439 i~~v~Q~~~l~~~-ti~eni~~~~~~~~~~~~-----~~~~-~----~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqr 507 (1133)
+++++|+..+++. |+++++.+-......+.. .... . ...+ ..+..+|++.++.+ ..||+|||||
T Consensus 61 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~-~~~~~L~~~~~~~~----~~lS~G~~~r 135 (212)
T cd03274 61 LSDLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEV-EQIAQMPKKSWKNI----SNLSGGEKTL 135 (212)
T ss_pred HHHHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcE-EEeeccccccccch----hhcCHHHHHH
Confidence 9999999877654 677766543211111000 0000 0 0011 12334566665544 4799999999
Q ss_pred HHHHHHHhh----CCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeC
Q 041277 508 IAIARAIIK----APRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQD 572 (1133)
Q Consensus 508 i~iARal~~----~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~ 572 (1133)
++||||++. +|++++|||||++||+.+...+.+.++++.++.|+|++||+.+..+.||++++|..
T Consensus 136 ~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~~~~d~v~~~~~ 204 (212)
T cd03274 136 SSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFELADRLVGIYK 204 (212)
T ss_pred HHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHHHhCCEEEEEEe
Confidence 999999974 57999999999999999999999999998778899999999877777999999964
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-23 Score=269.36 Aligned_cols=211 Identities=23% Similarity=0.359 Sum_probs=151.1
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHH---------HHHhccCCCc----c----EEEE
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIA---------LLQRFYAPLG----G----EIIL 422 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~---------~l~~~~~~~~----G----~i~~ 422 (1133)
.++++|++. ..|+|+||+|++||+++|.|+||||||||++ .|.|...+.. + -|.|
T Consensus 600 ~L~l~~~~~--------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~i 671 (1809)
T PRK00635 600 TLTLSKATK--------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHI 671 (1809)
T ss_pred eEEEecccc--------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEe
Confidence 477777752 2699999999999999999999999999999 4555332211 1 1345
Q ss_pred CCeecCCCC----H------HHHh---------hh-----ceEEecC------------------C--------------
Q 041277 423 DGVSIDKLQ----L------KWLR---------SQ-----MGLVSQE------------------P-------------- 446 (1133)
Q Consensus 423 ~g~~~~~~~----~------~~~r---------~~-----i~~v~Q~------------------~-------------- 446 (1133)
|-.++..-+ . +++| ++ ..+.+|. |
T Consensus 672 dQspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy 751 (1809)
T PRK00635 672 TRDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRF 751 (1809)
T ss_pred cCCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCccc
Confidence 544443211 1 1233 11 1233342 1
Q ss_pred ------CCccc-cHHHHHhcCCCCC-----CHHHHHHHHHHhchHHHHHhCCCccccc-ccCCCCCCChHHHHHHHHHHH
Q 041277 447 ------ALFAT-SIKENILFGKEDA-----SMEEVIEAAKASNAHNFIRQLPQQYDTQ-VGERGVQMSGGQKQRIAIARA 513 (1133)
Q Consensus 447 ------~l~~~-ti~eni~~~~~~~-----~~~~~~~~~~~~~~~~~i~~l~~g~~t~-~~~~g~~LSgGqkqri~iARa 513 (1133)
..+.+ ||.||+.++..++ ..+++.+.+ +.++.+ |++.. .++...+||||||||++||||
T Consensus 752 ~~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l------~~L~~v--GL~~l~l~q~~~tLSGGE~QRV~LAra 823 (1809)
T PRK00635 752 LPQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKI------HALCSL--GLDYLPLGRPLSSLSGGEIQRLKLAYE 823 (1809)
T ss_pred CHHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHH------HHHHHc--CCcchhhcCccccCCHHHHHHHHHHHH
Confidence 12333 8888888764311 122222222 123333 45544 577788999999999999999
Q ss_pred Hh---hCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhcCCEEEEEe------CCeEEeecCcch
Q 041277 514 II---KAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRNADVIAVVQ------DGQVMETGSHDE 583 (1133)
Q Consensus 514 l~---~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~~l~------~G~i~~~g~~~~ 583 (1133)
|+ ++|++|||||||++||+.+.+.+.+.|+++. +|+|+|+|+|+++.++.||+|++|+ +|+++++|++++
T Consensus 824 L~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpee 903 (1809)
T PRK00635 824 LLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSPEE 903 (1809)
T ss_pred HhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHHH
Confidence 98 5999999999999999999999999998875 5899999999999997799999996 799999999999
Q ss_pred hcc
Q 041277 584 LIQ 586 (1133)
Q Consensus 584 l~~ 586 (1133)
+..
T Consensus 904 l~~ 906 (1809)
T PRK00635 904 LIH 906 (1809)
T ss_pred HHh
Confidence 875
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=5e-23 Score=257.15 Aligned_cols=97 Identities=33% Similarity=0.588 Sum_probs=90.0
Q ss_pred cccCCCCCCChHHHHHHHHHHHHhhCC---CEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhcCCEE
Q 041277 492 QVGERGVQMSGGQKQRIAIARAIIKAP---RILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRNADVI 567 (1133)
Q Consensus 492 ~~~~~g~~LSgGqkqri~iARal~~~~---~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i 567 (1133)
.+++...+||||||||++|||+|+++| +++||||||++||+...+.+.+.|+++. +|+|+|+|+|+++.+..||+|
T Consensus 823 ~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~~aD~i 902 (943)
T PRK00349 823 KLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIKTADWI 902 (943)
T ss_pred cccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEE
Confidence 367788899999999999999999999 9999999999999999999999998875 589999999999999889999
Q ss_pred EEE------eCCeEEeecCcchhcccc
Q 041277 568 AVV------QDGQVMETGSHDELIQAE 588 (1133)
Q Consensus 568 ~~l------~~G~i~~~g~~~~l~~~~ 588 (1133)
++| ++|+|++.|+++++.+.+
T Consensus 903 i~Lgp~~G~~~G~Iv~~Gt~~el~~~~ 929 (943)
T PRK00349 903 IDLGPEGGDGGGEIVATGTPEEVAKVE 929 (943)
T ss_pred EEecCCcCCCCCEEEEeCCHHHHHhCc
Confidence 999 799999999999998643
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.4e-24 Score=208.14 Aligned_cols=128 Identities=27% Similarity=0.350 Sum_probs=112.6
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCCh---hHHhh
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHL---RSLRR 1078 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l---~~LR~ 1078 (1133)
|+|+||+.+|+.. +++|+||||+|++||.+=++|||||||||+++||+|-..|++|+|.++|.|+..+.- ..||+
T Consensus 2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 8999999999864 569999999999999999999999999999999999999999999999999987764 45899
Q ss_pred cccccccccccc-cccHHHHhccCC-----CCCCCHHHHHHHHHHcchHHHHhhccccc
Q 041277 1079 HIALVSQEPTLF-AGTIRENIAYGA-----SDEIDESEIVEAAKAANAHDFIAGLNEGY 1131 (1133)
Q Consensus 1079 ~isiV~Qdp~LF-~gTIreNI~~g~-----~~~~sdeei~~Al~~a~l~dfI~~LP~G~ 1131 (1133)
+||+|+||--|. +-|+.||++|.- +...-.+++.++++.+++.+-...||..+
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~L 138 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQL 138 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcccc
Confidence 999999999866 569999998842 22222457889999999999999999755
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-23 Score=209.50 Aligned_cols=123 Identities=29% Similarity=0.482 Sum_probs=109.6
Q ss_pred ccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCC-----CeEEECCcccCC--CC
Q 041277 1000 GNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLK-----GDVKIDDRDIRS--YH 1072 (1133)
Q Consensus 1000 g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~-----G~I~IdG~dI~~--i~ 1072 (1133)
..++.+|+++.|.+ ..+|+|||++|++++.+|++|||||||||+++.|-|+.|..+ |+|.+||.||.+ ++
T Consensus 6 ~~~~~~~l~~yYg~---~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 6 PAIEVRDLNLYYGD---KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred ceeEecceeEEECc---hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 36899999999963 348999999999999999999999999999999999999876 999999999976 57
Q ss_pred hhHHhhcccccccccccccccHHHHhccCCC-CC----CCHHHHHHHHHHcchHHHHh
Q 041277 1073 LRSLRRHIALVSQEPTLFAGTIRENIAYGAS-DE----IDESEIVEAAKAANAHDFIA 1125 (1133)
Q Consensus 1073 l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~-~~----~sdeei~~Al~~a~l~dfI~ 1125 (1133)
...||+++|+|+|.|.-|..||+||++||.. +. .=||-+++++++|.+||-+.
T Consensus 83 ~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVK 140 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVK 140 (253)
T ss_pred HHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhH
Confidence 9999999999999999999999999999942 11 12456888999999999875
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-22 Score=225.54 Aligned_cols=215 Identities=23% Similarity=0.435 Sum_probs=175.3
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeec-CCCCHHHHhh
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSI-DKLQLKWLRS 437 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~-~~~~~~~~r~ 437 (1133)
.-++++|++..-.. ....+++|||++++||+++|.|-.|-|-+-|+.+|+|+.+|.+|+|.++|+|+ ...+...+|+
T Consensus 256 ~vL~V~~L~v~~~~--~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~ 333 (501)
T COG3845 256 VVLEVEDLSVKDRR--GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRR 333 (501)
T ss_pred eEEEEeeeEeecCC--CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHh
Confidence 35899999986432 24579999999999999999999999999999999999999999999999997 6677776664
Q ss_pred -hceEEecCCC----CccccHHHHHhcCCCC---------CCHHHHHHHHHHhchHHHHHhC---CCcccccccCCCCCC
Q 041277 438 -QMGLVSQEPA----LFATSIKENILFGKED---------ASMEEVIEAAKASNAHNFIRQL---PQQYDTQVGERGVQM 500 (1133)
Q Consensus 438 -~i~~v~Q~~~----l~~~ti~eni~~~~~~---------~~~~~~~~~~~~~~~~~~i~~l---~~g~~t~~~~~g~~L 500 (1133)
.+||||.|.. ....|+.||+.++... .+..++.+.++ +.++++ +.+.++. ..+|
T Consensus 334 ~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~-----~li~~fdVr~~~~~~~----a~~L 404 (501)
T COG3845 334 LGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFAR-----ELIEEFDVRAPSPDAP----ARSL 404 (501)
T ss_pred cCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHH-----HHHHHcCccCCCCCcc----hhhc
Confidence 6999999973 3466999999886432 12233333322 233333 2233333 3589
Q ss_pred ChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEee
Q 041277 501 SGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMET 578 (1133)
Q Consensus 501 SgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~ 578 (1133)
|||++||+-+||-|.++|++||..+||-+||..+.+.|.+.|.+.+ +|+.|++|+-+++.+.. ||||.||.+|+++..
T Consensus 405 SGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~ 484 (501)
T COG3845 405 SGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGI 484 (501)
T ss_pred CCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceecc
Confidence 9999999999999999999999999999999999999999888765 69999999999999865 999999999999988
Q ss_pred cCcchh
Q 041277 579 GSHDEL 584 (1133)
Q Consensus 579 g~~~~l 584 (1133)
.++++.
T Consensus 485 ~~~~~~ 490 (501)
T COG3845 485 VPPEEA 490 (501)
T ss_pred cccccC
Confidence 877763
|
|
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.4e-23 Score=203.17 Aligned_cols=224 Identities=23% Similarity=0.352 Sum_probs=176.8
Q ss_pred EEEEEEEcCCC-CCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccC----CCccEEEECCeecCCCCHHHHhh
Q 041277 363 FKCVQFAYPSR-PESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYA----PLGGEIILDGVSIDKLQLKWLRS 437 (1133)
Q Consensus 363 ~~~v~~~y~~~-~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~----~~~G~i~~~g~~~~~~~~~~~r~ 437 (1133)
++|++..+... ....+.+++|++...||+-++||.||||||-+.+.|+|..+ .+.-..++++.|+-++++++.|+
T Consensus 6 IrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk 85 (330)
T COG4170 6 IRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRK 85 (330)
T ss_pred ccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhh
Confidence 44444444321 12357899999999999999999999999999999999764 35667788999999998888775
Q ss_pred ----hceEEecCCCCc---cccH----HHHHhcC----CC----CCCHHHHHHHHHHhchHH---HHHhCCCcccccccC
Q 041277 438 ----QMGLVSQEPALF---ATSI----KENILFG----KE----DASMEEVIEAAKASNAHN---FIRQLPQQYDTQVGE 495 (1133)
Q Consensus 438 ----~i~~v~Q~~~l~---~~ti----~eni~~~----~~----~~~~~~~~~~~~~~~~~~---~i~~l~~g~~t~~~~ 495 (1133)
.|++++|+|.-. +.+| -+||-+- +. .-...+.++.+.++|+.| ...+.|
T Consensus 86 ~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP--------- 156 (330)
T COG4170 86 LVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYP--------- 156 (330)
T ss_pred hhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCc---------
Confidence 478999999643 2243 4555321 10 112345666777777654 233334
Q ss_pred CCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeC
Q 041277 496 RGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQD 572 (1133)
Q Consensus 496 ~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~ 572 (1133)
.+|-.|+-|+|.||-|+..+|++||.||||.++|+.++.+|...|..+. .|.|+++++|++..+.. ||+|-||--
T Consensus 157 --~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYC 234 (330)
T COG4170 157 --YELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYC 234 (330)
T ss_pred --chhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEe
Confidence 4788999999999999999999999999999999999999999998764 47899999999999987 999999999
Q ss_pred CeEEeecCcchhccccchhhHHHHH
Q 041277 573 GQVMETGSHDELIQAESGLYTSLVR 597 (1133)
Q Consensus 573 G~i~~~g~~~~l~~~~~~~~~~~~~ 597 (1133)
|+-+|.+..+++++.+...|.+-.-
T Consensus 235 GQ~~ESa~~e~l~~~PhHPYTqALi 259 (330)
T COG4170 235 GQTVESAPSEELVTMPHHPYTQALI 259 (330)
T ss_pred cccccccchhHHhcCCCCchHHHHH
Confidence 9999999999999877888876543
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-23 Score=214.44 Aligned_cols=127 Identities=31% Similarity=0.435 Sum_probs=112.1
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhccc
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIA 1081 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~is 1081 (1133)
|+|+|||++|. +..+++|+||+|++||.+.+||||||||||+++++.|+++|++|+|+|||.||++++...||++||
T Consensus 2 I~~~nvsk~y~---~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYG---NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcC---CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 89999999996 345899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccc-cccHHHHhccCCC-----CCCCHHHHHHHHHHcchH--HHHhhccccc
Q 041277 1082 LVSQEPTLF-AGTIRENIAYGAS-----DEIDESEIVEAAKAANAH--DFIAGLNEGY 1131 (1133)
Q Consensus 1082 iV~Qdp~LF-~gTIreNI~~g~~-----~~~sdeei~~Al~~a~l~--dfI~~LP~G~ 1131 (1133)
||-|..-|| +-||.|||++-+. .+.-++.+.+-++.++++ +|-.+.|..+
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eL 136 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHEL 136 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhc
Confidence 999999999 4799999987521 112245677888999996 5888888644
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.89 E-value=8e-23 Score=220.52 Aligned_cols=131 Identities=33% Similarity=0.573 Sum_probs=119.9
Q ss_pred ccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhc
Q 041277 1000 GNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRH 1079 (1133)
Q Consensus 1000 g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~ 1079 (1133)
|.|+++|++++|+.. +.++|+|+||+|++||.+||+||+|||||||+++|.|++.|++|+|.+||.++.+.+...+|++
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (221)
T cd03244 1 GDIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSR 79 (221)
T ss_pred CcEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhh
Confidence 579999999999742 2368999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1080 IALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1080 isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
++|+||+|.+|++|++|||.+.. ..+.+++.++++..++.+++.++|.|++|
T Consensus 80 i~~~~q~~~l~~~tv~enl~~~~--~~~~~~~~~~~~~~~l~~~~~~l~~~l~~ 131 (221)
T cd03244 80 ISIIPQDPVLFSGTIRSNLDPFG--EYSDEELWQALERVGLKEFVESLPGGLDT 131 (221)
T ss_pred EEEECCCCccccchHHHHhCcCC--CCCHHHHHHHHHHhCcHHHHHhccccccc
Confidence 99999999999999999998653 34677899999999999999999988875
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.2e-23 Score=231.20 Aligned_cols=125 Identities=29% Similarity=0.476 Sum_probs=106.0
Q ss_pred CcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcC-----CCCCeEEECCcccC--C
Q 041277 998 ITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYD-----PLKGDVKIDDRDIR--S 1070 (1133)
Q Consensus 998 ~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~yd-----p~~G~I~IdG~dI~--~ 1070 (1133)
..+.|+|+||+|+|++. ..++|+|+||+|++||++|||||||||||||+++|+|+++ |++|+|.|||+|++ +
T Consensus 77 ~~~~i~~~nls~~y~~~-~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~ 155 (329)
T PRK14257 77 HANVFEIRNFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKK 155 (329)
T ss_pred cCceEEEEeeEEEecCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 45789999999999642 3469999999999999999999999999999999999997 57999999999997 4
Q ss_pred CChhHHhhcccccccccccccccHHHHhccCCC-CCCCHHH-----HHHHHHHcchHHH
Q 041277 1071 YHLRSLRRHIALVSQEPTLFAGTIRENIAYGAS-DEIDESE-----IVEAAKAANAHDF 1123 (1133)
Q Consensus 1071 i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~-~~~sdee-----i~~Al~~a~l~df 1123 (1133)
+++..+|+.++||||+|.+|++||+|||.++.. +..++++ +.++++.+++++.
T Consensus 156 ~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~ 214 (329)
T PRK14257 156 ISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDE 214 (329)
T ss_pred cchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcch
Confidence 567789999999999999999999999998742 2244444 4567788887543
|
|
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.2e-23 Score=224.98 Aligned_cols=183 Identities=17% Similarity=0.166 Sum_probs=127.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCee-c-CC-----CCHHHHhhhceEEecCCC--CccccHHHHHh--
Q 041277 390 KTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVS-I-DK-----LQLKWLRSQMGLVSQEPA--LFATSIKENIL-- 458 (1133)
Q Consensus 390 ~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~-~-~~-----~~~~~~r~~i~~v~Q~~~--l~~~ti~eni~-- 458 (1133)
.+++|+||||||||||+.+|.+...+..|+++.++.+ + .. .+.....-.+.+..|++. ++..+++++-.
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~ 102 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSY 102 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceEE
Confidence 3999999999999999999999998888887655421 1 11 111122223445555432 23344433321
Q ss_pred -cCCCCCCHHHHHHHHHHhchHHHHHh--CCCcccccccC---------CCCCCChHHHHHHHHHHHHhhC----CCEEE
Q 041277 459 -FGKEDASMEEVIEAAKASNAHNFIRQ--LPQQYDTQVGE---------RGVQMSGGQKQRIAIARAIIKA----PRILL 522 (1133)
Q Consensus 459 -~~~~~~~~~~~~~~~~~~~~~~~i~~--l~~g~~t~~~~---------~g~~LSgGqkqri~iARal~~~----~~ill 522 (1133)
+.....+.+++.+.++.++++.+... .++|.-+.+.+ ...+||||||||++||||++.+ |+++|
T Consensus 103 ~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~ll 182 (247)
T cd03275 103 RINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFV 182 (247)
T ss_pred EECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEE
Confidence 12223556777777788777422111 12232222222 2368999999999999999864 89999
Q ss_pred EeCcccCCChHHHHHHHHHHHHHhC-CCeEEEEecCcchhhcCCEEEEEeC
Q 041277 523 LDEATSALDSESERVVQEALDKAVV-GRTTIIIAHRLSTIRNADVIAVVQD 572 (1133)
Q Consensus 523 lDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~~d~i~~l~~ 572 (1133)
|||||++||+.....+.+.|++..+ |.|+|+|||+.+.+..||++++|..
T Consensus 183 lDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~~~ 233 (247)
T cd03275 183 LDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVGVYR 233 (247)
T ss_pred EecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEEEEe
Confidence 9999999999999999999998764 8899999999888888999999864
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-22 Score=204.32 Aligned_cols=128 Identities=25% Similarity=0.454 Sum_probs=109.9
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccC-CCChhHHhhc
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIR-SYHLRSLRRH 1079 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~-~i~l~~LR~~ 1079 (1133)
-|+++||+.+|. +..||+|||++|++||.|+|+|||||||||++++|.++-+|++|+|.|||.++. ..++..+|++
T Consensus 2 mi~i~~l~K~fg---~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFG---DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeC---CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 489999999996 335999999999999999999999999999999999999999999999998763 3389999999
Q ss_pred cccccccccccc-ccHHHHhccCCC--CCCC----HHHHHHHHHHcchHHHHhhccccc
Q 041277 1080 IALVSQEPTLFA-GTIRENIAYGAS--DEID----ESEIVEAAKAANAHDFIAGLNEGY 1131 (1133)
Q Consensus 1080 isiV~Qdp~LF~-gTIreNI~~g~~--~~~s----deei~~Al~~a~l~dfI~~LP~G~ 1131 (1133)
+|+|+|...||. -|+-||+.+++- ...+ ++.-.+.++++++.|-..+.|..+
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qL 137 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQL 137 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCcccc
Confidence 999999999995 699999999731 1122 234456688999999999888755
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.6e-22 Score=221.20 Aligned_cols=133 Identities=26% Similarity=0.481 Sum_probs=120.3
Q ss_pred CcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHh
Q 041277 998 ITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLR 1077 (1133)
Q Consensus 998 ~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR 1077 (1133)
..|.|+++||+++|+.. +.++|+|+||+|+|||.+||+|++|||||||+++|+|+++|++|+|++||.++.+.+...+|
T Consensus 16 ~~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 94 (257)
T cd03288 16 LGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLR 94 (257)
T ss_pred CCceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHh
Confidence 46889999999999642 24589999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1078 RHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1078 ~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
+++++|||+|.+|++|++||+.+.. ...+++++++++.+++++++..+|.|++|
T Consensus 95 ~~i~~v~q~~~l~~~tv~~nl~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~l~~ 148 (257)
T cd03288 95 SRLSIILQDPILFSGSIRFNLDPEC--KCTDDRLWEALEIAQLKNMVKSLPGGLDA 148 (257)
T ss_pred hhEEEECCCCcccccHHHHhcCcCC--CCCHHHHHHHHHHhCcHHHHhhcccccCc
Confidence 9999999999999999999997542 23566788999999999999999988875
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-21 Score=244.42 Aligned_cols=97 Identities=30% Similarity=0.554 Sum_probs=88.0
Q ss_pred cccc-cccCCCCCCChHHHHHHHHHHHHhh---CCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhh
Q 041277 488 QYDT-QVGERGVQMSGGQKQRIAIARAIIK---APRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIR 562 (1133)
Q Consensus 488 g~~t-~~~~~g~~LSgGqkqri~iARal~~---~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~ 562 (1133)
|++. .+++...+||||||||++|||+|++ +|+++||||||++||+...+.+.+.|+++. +|+|+|+|+|+++.+.
T Consensus 816 gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~ 895 (924)
T TIGR00630 816 GLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIK 895 (924)
T ss_pred CCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 4443 3677888999999999999999997 599999999999999999999999998875 5899999999999998
Q ss_pred cCCEEEEE------eCCeEEeecCcchh
Q 041277 563 NADVIAVV------QDGQVMETGSHDEL 584 (1133)
Q Consensus 563 ~~d~i~~l------~~G~i~~~g~~~~l 584 (1133)
.||+|++| ++|+|++.|+++++
T Consensus 896 ~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 896 TADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred hCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 89999999 79999999998876
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.6e-22 Score=216.14 Aligned_cols=135 Identities=46% Similarity=0.811 Sum_probs=118.4
Q ss_pred CcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHh
Q 041277 998 ITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLR 1077 (1133)
Q Consensus 998 ~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR 1077 (1133)
..|.|+++|++++|+++.+.++|+|+||+|++||.+||+||+|||||||+++|+|+++|++|+|.+||.++...+...+|
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 45789999999999753234689999999999999999999999999999999999999999999999999888888889
Q ss_pred hcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1078 RHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1078 ~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
+++++|||+|.+|.+|++||+.++.. ..+.+++++.++...++++++.+|.|+++
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~gl~~ 142 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQ-SCSFECVKEAAQKAHAHSFISELASGYDT 142 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccC-CCCHHHHHHHHHHcCcHHHHHhccccccc
Confidence 99999999999999999999988743 23455677777778889999999877753
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.2e-22 Score=217.06 Aligned_cols=131 Identities=47% Similarity=0.791 Sum_probs=118.8
Q ss_pred ccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhc
Q 041277 1000 GNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRH 1079 (1133)
Q Consensus 1000 g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~ 1079 (1133)
|+|+++|++++|++ ..++|+|+||+|++||.+||+||+|||||||+++|.|++.|++|+|.+||.++.+.+...+|++
T Consensus 1 ~~l~~~~l~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (229)
T cd03254 1 GEIEFENVNFSYDE--KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSM 78 (229)
T ss_pred CeEEEEEEEEecCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhh
Confidence 47999999999963 2358999999999999999999999999999999999999999999999999998888899999
Q ss_pred ccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1080 IALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1080 isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
++|+||+|.+|++|++||+.++.+ ...++++.++++..++.++++++|.|+++
T Consensus 79 i~~~~q~~~~~~~tv~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 131 (229)
T cd03254 79 IGVVLQDTFLFSGTIMENIRLGRP-NATDEEVIEAAKEAGAHDFIMKLPNGYDT 131 (229)
T ss_pred EEEecCCchhhhhHHHHHHhccCC-CCCHHHHHHHHHHhChHHHHHhCcccccC
Confidence 999999999999999999998754 34567888899999999999999987763
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.7e-22 Score=217.76 Aligned_cols=129 Identities=43% Similarity=0.706 Sum_probs=116.4
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhccc
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIA 1081 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~is 1081 (1133)
|+++||+++|+.+ +.++|+|+||++++||.+||+|++|||||||+++|.|++.|++|+|++||.|+...+...+|++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 5799999999642 346899999999999999999999999999999999999999999999999999888888999999
Q ss_pred ccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccC
Q 041277 1082 LVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYD 1132 (1133)
Q Consensus 1082 iV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~d 1132 (1133)
+|||++.+|+.|++|||.++.+ ..+.+++.++++..+++++++.+|.|++
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 129 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADP-GMSMERVIEAAKLAGAHDFISELPEGYD 129 (237)
T ss_pred EEcCCchhccchHHHHhhccCC-CCCHHHHHHHHHHcCcHHHHHhCccccc
Confidence 9999999999999999988654 3456678888999999999999988765
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.2e-22 Score=219.07 Aligned_cols=212 Identities=23% Similarity=0.299 Sum_probs=172.0
Q ss_pred cccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhh
Q 041277 358 LGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRS 437 (1133)
Q Consensus 358 ~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~ 437 (1133)
++.+++.+|+|.|+..+ .+.+.+++++++.-+.+++||++|+||||+++++.+...|..|.+.+.+ |.
T Consensus 360 ~p~l~i~~V~f~y~p~~-y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~ 427 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPSE-YQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RL 427 (582)
T ss_pred CCeeEEEeeeccCCCcc-hhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cc
Confidence 35699999999997543 2689999999999999999999999999999999999999999998876 56
Q ss_pred hceEEecCCCCc-cc--cHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHH
Q 041277 438 QMGLVSQEPALF-AT--SIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAI 514 (1133)
Q Consensus 438 ~i~~v~Q~~~l~-~~--ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal 514 (1133)
+|+|-.|...=+ +. +..|-..-..|..+++++.+.|...|+...+...+ ...||||||-|+++|-..
T Consensus 428 ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~s----------i~~LSGGQKsrvafA~~~ 497 (582)
T KOG0062|consen 428 RIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQS----------IASLSGGQKSRVAFAACT 497 (582)
T ss_pred eecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhcc----------ccccCCcchhHHHHHHHh
Confidence 899999975433 22 22333332344558899999999888876655432 246999999999999999
Q ss_pred hhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhccccchhhH
Q 041277 515 IKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQAESGLYT 593 (1133)
Q Consensus 515 ~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 593 (1133)
..+|.+|+|||||+.||.++-..+-++|+... -.||+|||+.+++.. |+.+.+.++|++.. .+..-..|+
T Consensus 498 ~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~--GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~-------ieg~~~~yK 568 (582)
T KOG0062|consen 498 WNNPHLLVLDEPTNHLDRDSLGALAKALKNFN--GGVVLVSHDEEFISSLCKELWVVEDGKVTP-------IEGGIDKYK 568 (582)
T ss_pred cCCCcEEEecCCCccccHHHHHHHHHHHHhcC--CcEEEEECcHHHHhhcCceeEEEcCCcEEe-------eeccHHHHH
Confidence 99999999999999999999999999998763 469999999999987 99999999999975 111223466
Q ss_pred HHHHhhc
Q 041277 594 SLVRLQT 600 (1133)
Q Consensus 594 ~~~~~~~ 600 (1133)
++...+.
T Consensus 569 kl~~~e~ 575 (582)
T KOG0062|consen 569 KLLGAEL 575 (582)
T ss_pred HHHHHHH
Confidence 6665543
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.4e-22 Score=220.34 Aligned_cols=126 Identities=29% Similarity=0.457 Sum_probs=113.8
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcc
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHI 1080 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~i 1080 (1133)
.|+++||+.+|++. . +|+|+||+|+.||.++|||||||||||+++++.||.+|++|+|+|||.|+.++++++ ++|
T Consensus 3 ~i~l~~v~K~yg~~--~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~i 77 (338)
T COG3839 3 ELELKNVRKSFGSF--E-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGI 77 (338)
T ss_pred EEEEeeeEEEcCCc--e-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCE
Confidence 58999999999632 2 899999999999999999999999999999999999999999999999999999986 899
Q ss_pred cccccccccccc-cHHHHhccCCCC-----CCCHHHHHHHHHHcchHHHHhhccccc
Q 041277 1081 ALVSQEPTLFAG-TIRENIAYGASD-----EIDESEIVEAAKAANAHDFIAGLNEGY 1131 (1133)
Q Consensus 1081 siV~Qdp~LF~g-TIreNI~~g~~~-----~~sdeei~~Al~~a~l~dfI~~LP~G~ 1131 (1133)
++|+|+..||.- |++|||+|+... +--++++.++++..++.+..++.|..+
T Consensus 78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~L 134 (338)
T COG3839 78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQL 134 (338)
T ss_pred EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccC
Confidence 999999999975 999999998431 223678999999999999999998765
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.8e-22 Score=213.43 Aligned_cols=191 Identities=28% Similarity=0.391 Sum_probs=149.7
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhh
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 438 (1133)
+-+-+.||+|.|++. .+.+++++|-|.--..+|||||||.|||||+++|.|-++|++|+.+=+- |-+
T Consensus 585 PvLGlH~VtFgy~gq--kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnh-----------rL~ 651 (807)
T KOG0066|consen 585 PVLGLHDVTFGYPGQ--KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNH-----------RLR 651 (807)
T ss_pred CeeecccccccCCCC--CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccc-----------eee
Confidence 346789999999864 4689999999999999999999999999999999999999999876432 346
Q ss_pred ceEEecCCC--Cc-cccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHh
Q 041277 439 MGLVSQEPA--LF-ATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAII 515 (1133)
Q Consensus 439 i~~v~Q~~~--l~-~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~ 515 (1133)
||+.-|+.. |- ..|-.|.+.-+. +..+++..+++-..++..- -+|. ....||||||.||++|---+
T Consensus 652 iG~FdQh~~E~L~~Eetp~EyLqr~F-Nlpyq~ARK~LG~fGL~sH-------AHTi---kikdLSGGQKaRValaeLal 720 (807)
T KOG0066|consen 652 IGWFDQHANEALNGEETPVEYLQRKF-NLPYQEARKQLGTFGLASH-------AHTI---KIKDLSGGQKARVALAELAL 720 (807)
T ss_pred eechhhhhHHhhccccCHHHHHHHhc-CCChHHHHHHhhhhhhhhc-------cceE---eeeecCCcchHHHHHHHHhc
Confidence 999888753 22 337777776332 3556666666665554322 1221 23579999999999999999
Q ss_pred hCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCC-EEEEEeCCeE
Q 041277 516 KAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNAD-VIAVVQDGQV 575 (1133)
Q Consensus 516 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d-~i~~l~~G~i 575 (1133)
+.|+||||||||.+||.++-..+-++|.+. +-.||+|||+-..+...| ..+|+++-.|
T Consensus 721 ~~PDvlILDEPTNNLDIESIDALaEAIney--~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i 779 (807)
T KOG0066|consen 721 GGPDVLILDEPTNNLDIESIDALAEAINEY--NGGVIMVSHDERLIVETDCNLWVVENQGI 779 (807)
T ss_pred CCCCEEEecCCCCCcchhhHHHHHHHHHhc--cCcEEEEecccceeeecCceEEEEccCCh
Confidence 999999999999999999999999999886 457999999998887633 4556665444
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.1e-22 Score=215.21 Aligned_cols=131 Identities=58% Similarity=0.966 Sum_probs=116.7
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhccc
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIA 1081 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~is 1081 (1133)
|+++|++++|++..+.++|+|+||++++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+...+|++++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 57899999997433346899999999999999999999999999999999999999999999999998888888889999
Q ss_pred ccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1082 LVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1082 iV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
++||+|.+|+.|++||+.++.+ ..+.+++.++++..++.+++..+|.|+++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 131 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKP-DATDEEVEEAAKKANIHDFIMSLPDGYDT 131 (238)
T ss_pred EECCchhhhhhhHHHHhhccCC-CCCHHHHHHHHHHcChHHHHHhhccccce
Confidence 9999999999999999998754 24566788888888999999999887753
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.3e-22 Score=209.35 Aligned_cols=130 Identities=28% Similarity=0.440 Sum_probs=110.2
Q ss_pred EEEEeEEEECCCC--CCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCC---hhHH
Q 041277 1002 IELQNVHFAYPAR--PDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYH---LRSL 1076 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~--~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~---l~~L 1076 (1133)
|+|+||+..|+.. +...+|+||||+|++||..||||+||||||||++++-|+-.|++|+|.+||.|+..++ +..+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 8999999999853 1246899999999999999999999999999999999999999999999998887766 6667
Q ss_pred hhccccccccccccc-ccHHHHhccCCC-CCCC----HHHHHHHHHHcchHHHHhhccccc
Q 041277 1077 RRHIALVSQEPTLFA-GTIRENIAYGAS-DEID----ESEIVEAAKAANAHDFIAGLNEGY 1131 (1133)
Q Consensus 1077 R~~isiV~Qdp~LF~-gTIreNI~~g~~-~~~s----deei~~Al~~a~l~dfI~~LP~G~ 1131 (1133)
|++||+|+|++.|++ .|+.+|++|.-. ...+ .+.+.+.++.+++.|.-.+-|..+
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qL 142 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQL 142 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhc
Confidence 899999999999998 899999988321 1122 345677899999999888777543
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-21 Score=210.06 Aligned_cols=132 Identities=41% Similarity=0.719 Sum_probs=118.0
Q ss_pred ccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhc
Q 041277 1000 GNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRH 1079 (1133)
Q Consensus 1000 g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~ 1079 (1133)
|+|+++|++++|+++ +.++|+|+||+|++||.+||+||+|||||||+++|.|+++|++|+|.+||.++...+...+|++
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (220)
T cd03245 1 GRIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRN 79 (220)
T ss_pred CeEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 469999999999642 2458999999999999999999999999999999999999999999999999988888888999
Q ss_pred ccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1080 IALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1080 isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
+++|||+|.+|..|++||+.++.+ ..+++++.++++..++.+.+.++|.|++|
T Consensus 80 i~~~~q~~~~~~~tv~e~l~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 132 (220)
T cd03245 80 IGYVPQDVTLFYGTLRDNITLGAP-LADDERILRAAELAGVTDFVNKHPNGLDL 132 (220)
T ss_pred EEEeCCCCccccchHHHHhhcCCC-CCCHHHHHHHHHHcCcHHHHHhccccccc
Confidence 999999999999999999988643 23566788899999999999999887764
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-21 Score=213.63 Aligned_cols=129 Identities=50% Similarity=0.753 Sum_probs=117.6
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhccc
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIA 1081 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~is 1081 (1133)
|+++||+++|++ +.++|+|+||+|++||.+||+||+|||||||+++|.|+++|++|+|.+||.++.+.+...+|+.++
T Consensus 1 l~~~~l~~~~~~--~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDP--GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCC--CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 579999999963 235899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1082 LVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1082 iV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
++||+|.+|++|++||+.++.+ ..+++++.++++.+++.+.+..+|.|++|
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~-~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 129 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRP-DATDEEVIEAAKAAQIHDKIMRFPDGYDT 129 (236)
T ss_pred EECCCChhhcchHHHHHhhcCC-CCCHHHHHHHHHHcCcHHHHHhccccccc
Confidence 9999999999999999998754 35677888899999999999999988764
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.2e-19 Score=199.78 Aligned_cols=391 Identities=14% Similarity=0.214 Sum_probs=215.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccC-CCChhHHHHHHHhhHHHHHHHHhhHH
Q 041277 722 YAFCFLGLAVFTLVINIIQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQD-ENSSGAICSRLAKDANVVRSLVGDRT 800 (1133)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~-~~~~G~l~~r~s~D~~~i~~~~~~~~ 800 (1133)
+++.+.++..+..+..+...-+..+.-.++++.+|...|+.--.-.++--|.+ .||- .|+++|++..-..+....
T Consensus 128 ~~~~~~~~s~~~a~~ky~~~~L~Lr~R~~ltk~lh~~Y~k~~~yYkis~~d~ridNPD----QrltqDv~kf~~~l~sl~ 203 (659)
T KOG0060|consen 128 YVLLIPGISLLNALLKFTTNELYLRFRKNLTKYLHRLYFKGFTYYKLSNLDDRIDNPD----QRLTQDVEKFCRQLSSLY 203 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHhccceEEEecccccccCChH----HHHhHHHHHHHHHHHHHH
Confidence 44444445555555555444444455555566666655554433333333321 2332 688888887766555544
Q ss_pred HHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhc
Q 041277 801 ALLVQTISAVTIAFTMGL-FIAWRLALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSS 879 (1133)
Q Consensus 801 ~~~~~~~~~~i~~~~~~~-~~~w~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~ 879 (1133)
..++...+.++.-..-++ ...|.-+..++..+.+..++....++.+.+..-+.++..++..-.-.+...+.+.|.-|+.
T Consensus 204 s~l~~a~~di~~Y~~~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qeklEGdfRy~h~rlr~NaE~iAFY~g 283 (659)
T KOG0060|consen 204 SNLLKAPFDLVYYTFRLFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKLEGDFRYKHSRLRVNAEEIAFYRG 283 (659)
T ss_pred HhhhccceeeehhhhHHhhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhhcchhhheeeeeecchhhhhhcc
Confidence 444444333222211111 1223222222222221222222222222233334444444444444566667778888887
Q ss_pred hHHHHHH----HHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCCCCHHHHHHHHH----H
Q 041277 880 QHRILKM----LEKAQQGPRRESIRQSWYAGIGLAFSQSLASCTWALDFWYGGRLI----ADGYISSKALFETFM----I 947 (1133)
Q Consensus 880 e~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~----~~g~~t~g~l~~~~~----~ 947 (1133)
++.+..+ |++..+...+.-....|.. +. ...+-++..++-+.+-+.-+ ..+.++...+...+. +
T Consensus 284 ~~~E~~~~~~~f~~Lv~~l~~l~~~r~~l~-f~---~n~~~Ylg~ilsy~vi~~p~Fs~h~y~~~s~aEL~~~i~~na~~ 359 (659)
T KOG0060|consen 284 GQVEHQRTDQRFRNLVQHLRELMSFRFWLG-FI---DNIFDYLGGILSYVVIAIPFFSGHVYDDLSPAELSGLISNNAFV 359 (659)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH---HHHHHHHHhhheeeEEeeeeecccccCCcCHHHHHHHHhhhHHH
Confidence 7665544 4444443333222222221 11 11111222111111111111 224566665544332 2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCCC-------------CCCC------CCC-CCCCCCcccEEEEeE
Q 041277 948 LVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRYTKI-------------EPED------PEG-HQPERITGNIELQNV 1007 (1133)
Q Consensus 948 ~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~-------------~~~~------~~~-~~~~~~~g~I~f~nV 1007 (1133)
.......++.+.....++.+...-..||-++++.-.+. ..|. +++ ....+.+-.|+|++|
T Consensus 360 ~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~~~~~~Dn~i~~e~v 439 (659)
T KOG0060|consen 360 FIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSGKAEPADNAIEFEEV 439 (659)
T ss_pred HHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCcccccccceEEeeee
Confidence 22233444555555566666666677777765421110 0000 000 011122357999999
Q ss_pred EEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEE--CCcccCCCChhHHhhccccccc
Q 041277 1008 HFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKI--DDRDIRSYHLRSLRRHIALVSQ 1085 (1133)
Q Consensus 1008 sF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~I--dG~dI~~i~l~~LR~~isiV~Q 1085 (1133)
++.=|++ +..+.+|+||+|+.|+.+-|+||||||||+|++.|.++|+..+|++.- ||-+ +.+=+|||
T Consensus 440 ~l~tPt~-g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~----------~~lfflPQ 508 (659)
T KOG0060|consen 440 SLSTPTN-GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGP----------KDLFFLPQ 508 (659)
T ss_pred eecCCCC-CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCC----------CceEEecC
Confidence 9999875 445678899999999999999999999999999999999999999864 3332 45889999
Q ss_pred ccccccccHHHHhccCC----C--CCCCHHHHHHHHHHcchHHHHhhcccccC
Q 041277 1086 EPTLFAGTIRENIAYGA----S--DEIDESEIVEAAKAANAHDFIAGLNEGYD 1132 (1133)
Q Consensus 1086 dp~LF~gTIreNI~~g~----~--~~~sdeei~~Al~~a~l~dfI~~LP~G~d 1132 (1133)
-|++=.||+||-+-|-. + ...+|++|.+-++.+++.+.++. -+|+|
T Consensus 509 rPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r-~ggld 560 (659)
T KOG0060|consen 509 RPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLER-EGGLD 560 (659)
T ss_pred CCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHH-hCCCC
Confidence 99999999999998831 1 24689999999999999887665 47777
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-21 Score=212.57 Aligned_cols=130 Identities=53% Similarity=0.834 Sum_probs=116.7
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhccc
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIA 1081 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~is 1081 (1133)
|+++|++++|+++ +.++|+|+||++++||.+||+||+|||||||+++|.|++.|++|+|.+||.++.+.+.+.+|++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 5799999999643 235899999999999999999999999999999999999999999999999998888888999999
Q ss_pred ccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1082 LVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1082 iV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
++||+|.+|..|++||+.++.+ ..+.+++.++++..+++++++.+|.|+++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 130 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRP-GATREEVEEAARAANAHEFIMELPEGYDT 130 (234)
T ss_pred EeCCCCeeccccHHHHhhccCC-CCCHHHHHHHHHHcCcHHHHHhcccCcce
Confidence 9999999999999999998754 34567788888999999999999887753
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.9e-22 Score=218.22 Aligned_cols=127 Identities=28% Similarity=0.487 Sum_probs=112.8
Q ss_pred ccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhc
Q 041277 1000 GNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRH 1079 (1133)
Q Consensus 1000 g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~ 1079 (1133)
..|+|+||+-+|+ +..+++|+||+|++||.++|.|||||||||++++|.||.+|++|+|.|||.||.+++++ ++.
T Consensus 4 ~~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~ 78 (352)
T COG3842 4 PALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRP 78 (352)
T ss_pred ceEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hcc
Confidence 3699999999996 45689999999999999999999999999999999999999999999999999999988 599
Q ss_pred ccccccccccc-cccHHHHhccCCC--CCCC----HHHHHHHHHHcchHHHHhhccccc
Q 041277 1080 IALVSQEPTLF-AGTIRENIAYGAS--DEID----ESEIVEAAKAANAHDFIAGLNEGY 1131 (1133)
Q Consensus 1080 isiV~Qdp~LF-~gTIreNI~~g~~--~~~s----deei~~Al~~a~l~dfI~~LP~G~ 1131 (1133)
|++|+|+--|| +-||+|||.||-. .... ++.+.++++.+++.+|-.+.|..+
T Consensus 79 ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qL 137 (352)
T COG3842 79 IGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQL 137 (352)
T ss_pred cceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhh
Confidence 99999999999 5799999999853 1112 247899999999999988877643
|
|
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.9e-21 Score=203.05 Aligned_cols=172 Identities=17% Similarity=0.202 Sum_probs=118.4
Q ss_pred ccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCC-CHHHHhhhceEEecCCCCccccHHHHH
Q 041277 379 FKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKL-QLKWLRSQMGLVSQEPALFATSIKENI 457 (1133)
Q Consensus 379 l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~-~~~~~r~~i~~v~Q~~~l~~~ti~eni 457 (1133)
++++++++.+| +.+|+||||||||||+.+|.-.+..... ....|..+.++ ....-...|.+++|+.-++. |
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~-----~- 83 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDA-----N- 83 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhCCCCeEEEEEEEEcCCccC-----C-
Confidence 46778888887 8899999999999999999754332211 01112211110 00011345788888766554 2
Q ss_pred hcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHH----hhCCCEEEEeCcccCCChH
Q 041277 458 LFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAI----IKAPRILLLDEATSALDSE 533 (1133)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal----~~~~~illlDE~ts~lD~~ 533 (1133)
+ ....+ ...+.++++. . ....+...+||||||||++||||+ +.+|+++||||||++||+.
T Consensus 84 ----~-~~~~~------~~~~~~~l~~-~----~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~ 147 (198)
T cd03276 84 ----P-LCVLS------QDMARSFLTS-N----KAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMV 147 (198)
T ss_pred ----c-CCHHH------HHHHHHHhcc-c----cccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHH
Confidence 1 11111 1122233333 1 123345568999999999999999 5899999999999999999
Q ss_pred HHHHHHHHHHHHhC----CCeEEEEecCcchhhcCCEEEEEeCCe
Q 041277 534 SERVVQEALDKAVV----GRTTIIIAHRLSTIRNADVIAVVQDGQ 574 (1133)
Q Consensus 534 ~~~~i~~~l~~~~~----~~t~i~itH~~~~~~~~d~i~~l~~G~ 574 (1133)
+...+.+.|.+..+ ++|+|++||+++.+..+|+|-+|..++
T Consensus 148 ~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~~ 192 (198)
T cd03276 148 NRKISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMKD 192 (198)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEecC
Confidence 99999999987632 358999999999999999999998754
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.5e-21 Score=209.86 Aligned_cols=180 Identities=23% Similarity=0.391 Sum_probs=137.9
Q ss_pred EEEEcCCCCCCccccceeEEeeC-----CCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 366 VQFAYPSRPESIIFKDFCLTIPA-----GKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 366 v~~~y~~~~~~~~l~~i~l~i~~-----g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
.-++|++- ...+.++.|++++ ||+++++||||-||||++++|+|.++|++|+ ..++ +++
T Consensus 341 ~lv~y~~~--~k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~~----------~vS 404 (591)
T COG1245 341 TLVEYPDL--KKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EEDL----------KVS 404 (591)
T ss_pred eeeecchh--eeecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Cccc----------eEe
Confidence 34556532 1246677777664 7899999999999999999999999999998 2222 589
Q ss_pred EEecCCC-CccccHHHHHhcCCCC-CCHHH-HHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhC
Q 041277 441 LVSQEPA-LFATSIKENILFGKED-ASMEE-VIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKA 517 (1133)
Q Consensus 441 ~v~Q~~~-l~~~ti~eni~~~~~~-~~~~~-~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 517 (1133)
|=||--. -|++||++-+.-..+. ..... -.+.++-.++++.+++ ...+|||||.||+|||-||.++
T Consensus 405 yKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~e~-----------~v~~LSGGELQRvaIaa~L~re 473 (591)
T COG1245 405 YKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLER-----------PVDELSGGELQRVAIAAALSRE 473 (591)
T ss_pred ecceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcCccchHHHHhc-----------ccccCCchhHHHHHHHHHhccc
Confidence 9999532 3889999987643322 11111 1233444455444433 3458999999999999999999
Q ss_pred CCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeC
Q 041277 518 PRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQD 572 (1133)
Q Consensus 518 ~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~ 572 (1133)
+++++||||.+.||.+.+-.+-++|++.. .++|.++|-|++-.+.. +||++|.+.
T Consensus 474 ADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~G 531 (591)
T COG1245 474 ADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEG 531 (591)
T ss_pred cCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEec
Confidence 99999999999999999999999998864 47899999999999987 999999863
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.2e-21 Score=206.34 Aligned_cols=117 Identities=31% Similarity=0.482 Sum_probs=104.7
Q ss_pred EEEEeEEEECCCCCC--CccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhc
Q 041277 1002 IELQNVHFAYPARPD--VMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRH 1079 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~--~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~ 1079 (1133)
|+++||+++|+++.+ .++|+|+||+|++||.++|+||+|||||||+++|+|+++|++|+|++|| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 579999999964321 3599999999999999999999999999999999999999999999999 6
Q ss_pred ccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1080 IALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1080 isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
|+||||+|.+|++|++||+.++. ..++++++++++.+++.+++..+|.|++|
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 119 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGK--PFDEERYEKVIKACALEPDLEILPDGDLT 119 (204)
T ss_pred EEEEecCchhccCcHHHHhccCC--CcCHHHHHHHHHHcCcHHHHHhccCcccc
Confidence 99999999999999999999863 24566788999999999999999988764
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.2e-21 Score=216.04 Aligned_cols=131 Identities=24% Similarity=0.468 Sum_probs=112.5
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcc
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHI 1080 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~i 1080 (1133)
-|+++||+++|+.....++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999642223589999999999999999999999999999999999999999999999999988888999999
Q ss_pred ccccccc--ccccccHHHHhccCCCC-CCC----HHHHHHHHHHcchHHHHhhccccc
Q 041277 1081 ALVSQEP--TLFAGTIRENIAYGASD-EID----ESEIVEAAKAANAHDFIAGLNEGY 1131 (1133)
Q Consensus 1081 siV~Qdp--~LF~gTIreNI~~g~~~-~~s----deei~~Al~~a~l~dfI~~LP~G~ 1131 (1133)
++|||+| .++..|++|||.++... ..+ ++.+.++++.+++.++..+.|..|
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~L 141 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARL 141 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccC
Confidence 9999998 36778999999986321 122 356888999999999888776543
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.9e-21 Score=206.43 Aligned_cols=123 Identities=29% Similarity=0.475 Sum_probs=109.7
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcc
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHI 1080 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~i 1080 (1133)
.++.+|++|+|+ +.++|+|+||+|++||.++|+||+|||||||+++|.|+..|.+|+|++||.|+.+++..++-+++
T Consensus 2 ~L~~~~ls~~y~---~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYG---GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEEC---CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 378999999996 34699999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccc-ccccccHHHHhccCCCC---------CCCHHHHHHHHHHcchHHHHhh
Q 041277 1081 ALVSQEP-TLFAGTIRENIAYGASD---------EIDESEIVEAAKAANAHDFIAG 1126 (1133)
Q Consensus 1081 siV~Qdp-~LF~gTIreNI~~g~~~---------~~sdeei~~Al~~a~l~dfI~~ 1126 (1133)
|||||++ .-|.-|++|=+.+|+-+ ..+++.+.+|++..++.++.++
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r 134 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADR 134 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcC
Confidence 9999996 56788999999999631 1123358889999999998764
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.7e-21 Score=188.94 Aligned_cols=123 Identities=31% Similarity=0.504 Sum_probs=108.8
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhccc
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIA 1081 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~is 1081 (1133)
|.+++|.|+|..-+ =.++++|++||+|||+||||||||||++|+.||..|.+|+|+|+|+|....++. ++-+|
T Consensus 2 l~L~~V~~~y~~~~-----~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVS 74 (231)
T COG3840 2 LALDDVRFSYGHLP-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVS 74 (231)
T ss_pred ccccceEEeeCcce-----EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChh
Confidence 56889999996432 367899999999999999999999999999999999999999999999888876 48899
Q ss_pred cccccccccc-ccHHHHhccCCCC-----CCCHHHHHHHHHHcchHHHHhhccccc
Q 041277 1082 LVSQEPTLFA-GTIRENIAYGASD-----EIDESEIVEAAKAANAHDFIAGLNEGY 1131 (1133)
Q Consensus 1082 iV~Qdp~LF~-gTIreNI~~g~~~-----~~sdeei~~Al~~a~l~dfI~~LP~G~ 1131 (1133)
+++||..||. -||++|+.+|..+ +...+.+..|+.++|+.+|..+||..+
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~L 130 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGEL 130 (231)
T ss_pred hhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcccc
Confidence 9999999996 5999999999632 344678999999999999999999754
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.2e-21 Score=201.37 Aligned_cols=123 Identities=26% Similarity=0.387 Sum_probs=107.7
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcc
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHI 1080 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~i 1080 (1133)
.+++++|+.+|++ ..||+|+||+|++||.|+||||||||||||++++.||.+|++|+|.+||.++..- ...+
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~ 74 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDI 74 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCE
Confidence 4899999999964 5699999999999999999999999999999999999999999999999998443 3679
Q ss_pred ccccccccccc-ccHHHHhccCCCCC-----CCHHHHHHHHHHcchHHHHhhccccc
Q 041277 1081 ALVSQEPTLFA-GTIRENIAYGASDE-----IDESEIVEAAKAANAHDFIAGLNEGY 1131 (1133)
Q Consensus 1081 siV~Qdp~LF~-gTIreNI~~g~~~~-----~sdeei~~Al~~a~l~dfI~~LP~G~ 1131 (1133)
+||+|++.||. -|++||+.+|.... -..+.+.++++.+|+.+|-.+.|..+
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qL 131 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQL 131 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCcccc
Confidence 99999999998 59999999985311 12456888999999999999888754
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.7e-21 Score=204.67 Aligned_cols=128 Identities=30% Similarity=0.557 Sum_probs=113.9
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccC-CCChhHHhhc
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIR-SYHLRSLRRH 1079 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~-~i~l~~LR~~ 1079 (1133)
-|+++|++|+|+++ .++|+|+||+|++||.++|+|+||||||||+++|.|++.|++|.|.+||.|+. +.+...+|++
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 48999999999765 56999999999999999999999999999999999999999999999999998 4899999999
Q ss_pred cccccccc--ccccccHHHHhccCCCC-CCCHH----HHHHHHHHcchHHHHhhcccc
Q 041277 1080 IALVSQEP--TLFAGTIRENIAYGASD-EIDES----EIVEAAKAANAHDFIAGLNEG 1130 (1133)
Q Consensus 1080 isiV~Qdp--~LF~gTIreNI~~g~~~-~~sde----ei~~Al~~a~l~dfI~~LP~G 1130 (1133)
+|+|+|+| .+|..||.|.++||..+ ..+.+ .+.+|++.++++++-++-|..
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~ 138 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFN 138 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccc
Confidence 99999999 79999999999999643 23443 477889999999887666643
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.7e-21 Score=195.68 Aligned_cols=123 Identities=27% Similarity=0.476 Sum_probs=108.0
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCC---hhHHh
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYH---LRSLR 1077 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~---l~~LR 1077 (1133)
.|+++||+-+||+ +..+|+||||+|++||.|||+||||||||||++.|.|+.||++|+|.++|.++..++ +..+|
T Consensus 3 ~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 4899999999984 456999999999999999999999999999999999999999999999999999888 77889
Q ss_pred hcccccccccccccc-cHHHHhccCCCC----------CC---CHHHHHHHHHHcchHHHHh
Q 041277 1078 RHIALVSQEPTLFAG-TIRENIAYGASD----------EI---DESEIVEAAKAANAHDFIA 1125 (1133)
Q Consensus 1078 ~~isiV~Qdp~LF~g-TIreNI~~g~~~----------~~---sdeei~~Al~~a~l~dfI~ 1125 (1133)
++||+|+|++.|-.. |+-+|+..|+-+ -. +.....+|++.+++.|+.-
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~ 142 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAY 142 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHH
Confidence 999999999999875 899999877532 12 2345778899999988754
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.4e-21 Score=208.10 Aligned_cols=129 Identities=27% Similarity=0.437 Sum_probs=108.9
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChh---HHhh
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLR---SLRR 1078 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~---~LR~ 1078 (1133)
|+++||+++|++. ..++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++.+.+.. .+|+
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 7899999999632 23589999999999999999999999999999999999999999999999999876643 4789
Q ss_pred ccccccccccccc-ccHHHHhccCC-----CCCCCHHHHHHHHHHcchHHHHhhccccc
Q 041277 1079 HIALVSQEPTLFA-GTIRENIAYGA-----SDEIDESEIVEAAKAANAHDFIAGLNEGY 1131 (1133)
Q Consensus 1079 ~isiV~Qdp~LF~-gTIreNI~~g~-----~~~~sdeei~~Al~~a~l~dfI~~LP~G~ 1131 (1133)
++++|||+|.+|. .|++||+.++. +....++++.++++..++.++..+.|..|
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 139 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQL 139 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhC
Confidence 9999999999987 59999998742 11113467889999999998887766543
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.84 E-value=3e-21 Score=218.70 Aligned_cols=130 Identities=23% Similarity=0.370 Sum_probs=110.2
Q ss_pred EEEEeEEEECCCCC-CCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhH---Hh
Q 041277 1002 IELQNVHFAYPARP-DVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRS---LR 1077 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~---LR 1077 (1133)
|+|+||+++|+++. ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+.+++..+ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 79999999996322 246999999999999999999999999999999999999999999999999999887654 58
Q ss_pred hccccccccccccc-ccHHHHhccCCC-CCCC----HHHHHHHHHHcchHHHHhhccccc
Q 041277 1078 RHIALVSQEPTLFA-GTIRENIAYGAS-DEID----ESEIVEAAKAANAHDFIAGLNEGY 1131 (1133)
Q Consensus 1078 ~~isiV~Qdp~LF~-gTIreNI~~g~~-~~~s----deei~~Al~~a~l~dfI~~LP~G~ 1131 (1133)
++|++|||++.||. .|++||+.++.. ...+ ++++.++++.+++.++..+.|..|
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~L 141 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNL 141 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhC
Confidence 89999999999995 799999987521 0112 345788999999998887776543
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.6e-21 Score=204.46 Aligned_cols=115 Identities=36% Similarity=0.609 Sum_probs=102.9
Q ss_pred cccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhh
Q 041277 999 TGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRR 1078 (1133)
Q Consensus 999 ~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~ 1078 (1133)
.+.++++|++++|+.. +.++|+|+||+|++||.+||+|++|||||||+++|+|+++|++|+|.+||.++.+.+...+|+
T Consensus 4 ~~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (207)
T cd03369 4 HGEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRS 82 (207)
T ss_pred CCeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHh
Confidence 3679999999999642 235899999999999999999999999999999999999999999999999999999889999
Q ss_pred cccccccccccccccHHHHhccCCCCCCCHHHHHHHHH
Q 041277 1079 HIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAK 1116 (1133)
Q Consensus 1079 ~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~ 1116 (1133)
+++||||+|.+|++|++||+.+.+ ..+++++.++++
T Consensus 83 ~i~~v~q~~~~~~~tv~~~l~~~~--~~~~~~~~~~l~ 118 (207)
T cd03369 83 SLTIIPQDPTLFSGTIRSNLDPFD--EYSDEEIYGALR 118 (207)
T ss_pred hEEEEecCCcccCccHHHHhcccC--CCCHHHHHHHhh
Confidence 999999999999999999998753 245667777766
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.5e-21 Score=195.56 Aligned_cols=126 Identities=29% Similarity=0.446 Sum_probs=106.5
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChh---HHh
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLR---SLR 1077 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~---~LR 1077 (1133)
-|++++|+++|.+ ..||+||||+|++||.+||+|+||||||||++++.|+..|++|+|+|+|.||.+++-+ .+|
T Consensus 8 ~I~vr~v~~~fG~---~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 8 LIEVRGVTKSFGD---RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred eEEEeeeeeecCC---EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 5999999999963 4599999999999999999999999999999999999999999999999999999865 469
Q ss_pred hcccccccccccccc-cHHHHhccCCC--CCCCHHHHHH----HHHHcchHHH-Hhhccc
Q 041277 1078 RHIALVSQEPTLFAG-TIRENIAYGAS--DEIDESEIVE----AAKAANAHDF-IAGLNE 1129 (1133)
Q Consensus 1078 ~~isiV~Qdp~LF~g-TIreNI~~g~~--~~~sdeei~~----Al~~a~l~df-I~~LP~ 1129 (1133)
+++|+++|..-||+. ||+||+.|--. ...+++++++ -++.+|+..- -+.+|.
T Consensus 85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~Ps 144 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPS 144 (263)
T ss_pred hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCch
Confidence 999999999999986 99999987211 2345555554 4577888776 444553
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.3e-21 Score=211.80 Aligned_cols=129 Identities=31% Similarity=0.550 Sum_probs=112.2
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcc
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHI 1080 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~i 1080 (1133)
-|+++||+++|+. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|+++
T Consensus 4 ~l~~~~l~~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCC--CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 4899999999963 23589999999999999999999999999999999999999999999999999988888899999
Q ss_pred ccccccc--ccccccHHHHhccCCCC-CC----CHHHHHHHHHHcchHHHHhhccccc
Q 041277 1081 ALVSQEP--TLFAGTIRENIAYGASD-EI----DESEIVEAAKAANAHDFIAGLNEGY 1131 (1133)
Q Consensus 1081 siV~Qdp--~LF~gTIreNI~~g~~~-~~----sdeei~~Al~~a~l~dfI~~LP~G~ 1131 (1133)
+||||+| .+|..|++||+.++... .. .++++.++++.+++.++..+.|..|
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~L 139 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHL 139 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhC
Confidence 9999999 68999999999986311 11 2356788999999998888777543
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.4e-21 Score=214.70 Aligned_cols=129 Identities=22% Similarity=0.364 Sum_probs=105.0
Q ss_pred ccEEEEeEEEECCCCC--CCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCC------
Q 041277 1000 GNIELQNVHFAYPARP--DVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSY------ 1071 (1133)
Q Consensus 1000 g~I~f~nVsF~Y~~~~--~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i------ 1071 (1133)
.-|+++||+|+|+... +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|++||.++.+.
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 3599999999996421 23699999999999999999999999999999999999999999999999998753
Q ss_pred ----------ChhHHhhccccccccc--ccccccHHHHhccCCC-CCCCHH----HHHHHHHHcchH-HHHhhcc
Q 041277 1072 ----------HLRSLRRHIALVSQEP--TLFAGTIRENIAYGAS-DEIDES----EIVEAAKAANAH-DFIAGLN 1128 (1133)
Q Consensus 1072 ----------~l~~LR~~isiV~Qdp--~LF~gTIreNI~~g~~-~~~sde----ei~~Al~~a~l~-dfI~~LP 1128 (1133)
+...+|+++++|+|+| .+|++|++|||.++.. ...+++ .+.++++..++. ++..+-|
T Consensus 100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 174 (320)
T PRK13631 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSP 174 (320)
T ss_pred cccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCc
Confidence 3567899999999998 6999999999988732 112332 345567777775 4555433
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-20 Score=202.21 Aligned_cols=127 Identities=25% Similarity=0.383 Sum_probs=110.5
Q ss_pred EEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCCh----hHHhh
Q 041277 1003 ELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHL----RSLRR 1078 (1133)
Q Consensus 1003 ~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l----~~LR~ 1078 (1133)
...|+.|+|+.+ .++|+|+||+|++||.++|+|++|||||||+++|.|+++|++|+|.+||.++.+.+. ...|+
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 567899999743 458999999999999999999999999999999999999999999999999876653 34678
Q ss_pred cccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1079 HIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1079 ~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
.++|++|+|.+|+.|++|||.++.+ .++++..++++..++.+++..+|.|++|
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 132 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSP--FNKQRYKAVTDACSLQPDIDLLPFGDQT 132 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCc--CCHHHHHHHHHHhCcHHHHHhCcCcccc
Confidence 8999999999999999999988643 3566778899999999999888887654
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=99.83 E-value=1e-20 Score=203.58 Aligned_cols=127 Identities=23% Similarity=0.377 Sum_probs=106.3
Q ss_pred EEEEeEEEECCCCCC-CccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcc
Q 041277 1002 IELQNVHFAYPARPD-VMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHI 1080 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~-~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~i 1080 (1133)
|+++||+++|+++.. .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.. ....+|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 789999999974321 259999999999999999999999999999999999999999999999999976 456789999
Q ss_pred cccccccccccc-cHHHHhccCCC-----CCCCHHHHHHHHHHcchHHHHhhccc
Q 041277 1081 ALVSQEPTLFAG-TIRENIAYGAS-----DEIDESEIVEAAKAANAHDFIAGLNE 1129 (1133)
Q Consensus 1081 siV~Qdp~LF~g-TIreNI~~g~~-----~~~sdeei~~Al~~a~l~dfI~~LP~ 1129 (1133)
++|||+|.+|.+ |++||+.+... ....++++.++++..++.+...+.+.
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 135 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVG 135 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhh
Confidence 999999999985 99999976321 11124567889999999887665443
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=9e-21 Score=206.05 Aligned_cols=129 Identities=24% Similarity=0.313 Sum_probs=107.3
Q ss_pred cEEEEeEEEECCCCC-CCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhH---H
Q 041277 1001 NIELQNVHFAYPARP-DVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRS---L 1076 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~---L 1076 (1133)
-++++||+++|+++. ..++|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|++||.|+.+.+... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999997422 146999999999999999999999999999999999999999999999999999887654 3
Q ss_pred h-hcccccccccccccc-cHHHHhccCC-----CCCCCHHHHHHHHHHcchHHHHhhccc
Q 041277 1077 R-RHIALVSQEPTLFAG-TIRENIAYGA-----SDEIDESEIVEAAKAANAHDFIAGLNE 1129 (1133)
Q Consensus 1077 R-~~isiV~Qdp~LF~g-TIreNI~~g~-----~~~~sdeei~~Al~~a~l~dfI~~LP~ 1129 (1133)
| +.++||||+|.+|.+ |++||+.++. +....++++.++++..++.++..+.|.
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~ 144 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPS 144 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChh
Confidence 3 689999999999975 9999998631 111123568889999999887766554
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.9e-21 Score=205.82 Aligned_cols=123 Identities=34% Similarity=0.556 Sum_probs=106.4
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhc-----CCCCCeEEECCcccCCCC--hh
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFY-----DPLKGDVKIDDRDIRSYH--LR 1074 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~y-----dp~~G~I~IdG~dI~~i~--l~ 1074 (1133)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|++ +|++|+|.+||.++.+.+ ..
T Consensus 1 i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 578999999964 35899999999999999999999999999999999999 999999999999998877 67
Q ss_pred HHhhcccccccccccccccHHHHhccCCCC-C-C----CHHHHHHHHHHcchHHHHhhc
Q 041277 1075 SLRRHIALVSQEPTLFAGTIRENIAYGASD-E-I----DESEIVEAAKAANAHDFIAGL 1127 (1133)
Q Consensus 1075 ~LR~~isiV~Qdp~LF~gTIreNI~~g~~~-~-~----sdeei~~Al~~a~l~dfI~~L 1127 (1133)
.+|+++++|||++.+|..|++||+.++... . . .++++.++++..++.+...+.
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 136 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDR 136 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhcc
Confidence 789999999999999999999999875311 1 1 245678899999998876654
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.6e-21 Score=208.07 Aligned_cols=125 Identities=28% Similarity=0.450 Sum_probs=106.4
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCCh---hHHhh
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHL---RSLRR 1078 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l---~~LR~ 1078 (1133)
|+++||+++|++ .++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++.+.+. ..+|+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 578999999963 358999999999999999999999999999999999999999999999999988764 57889
Q ss_pred cccccccccccccc-cHHHHhccCCC--CCCC----HHHHHHHHHHcchHHHHhhccc
Q 041277 1079 HIALVSQEPTLFAG-TIRENIAYGAS--DEID----ESEIVEAAKAANAHDFIAGLNE 1129 (1133)
Q Consensus 1079 ~isiV~Qdp~LF~g-TIreNI~~g~~--~~~s----deei~~Al~~a~l~dfI~~LP~ 1129 (1133)
++++|||+|.+|.+ |++||+.++.. ...+ ++++.++++..++.++..+.|.
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 135 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPA 135 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChh
Confidence 99999999999986 99999987521 1122 3457778999999887766554
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.8e-21 Score=207.82 Aligned_cols=122 Identities=28% Similarity=0.502 Sum_probs=105.9
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcC---CCCCeEEECCcccCCCChhHHh
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYD---PLKGDVKIDDRDIRSYHLRSLR 1077 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~yd---p~~G~I~IdG~dI~~i~l~~LR 1077 (1133)
.|+++||+++|++ .++|+|+||++++||.+||+|+||||||||+++|+|+++ |++|+|.+||.|+.+.+...+|
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 4889999999963 358999999999999999999999999999999999985 6899999999999998888899
Q ss_pred hcccccccccccccccHHHHhccCCC-------CCCCHHHHHHHHHHcchHHHHh
Q 041277 1078 RHIALVSQEPTLFAGTIRENIAYGAS-------DEIDESEIVEAAKAANAHDFIA 1125 (1133)
Q Consensus 1078 ~~isiV~Qdp~LF~gTIreNI~~g~~-------~~~sdeei~~Al~~a~l~dfI~ 1125 (1133)
++++|+||+|.+|..|++||+.++.. ....++++.++++..++++++.
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 133 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVK 133 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhh
Confidence 99999999999999999999987521 0112346788899999976553
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.3e-20 Score=198.32 Aligned_cols=199 Identities=24% Similarity=0.413 Sum_probs=125.9
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHh--ccCCCccEEEECCeecCCCCHHH---
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQR--FYAPLGGEIILDGVSIDKLQLKW--- 434 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~--~~~~~~G~i~~~g~~~~~~~~~~--- 434 (1133)
.|.++|.+.+-.++ ..+.|-||.|-.|..+++|||||-|||||++-|.. +--|..=.+++..+.+..-+...
T Consensus 264 DIKiEnF~ISA~Gk---~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~t 340 (807)
T KOG0066|consen 264 DIKIENFDISAQGK---LLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDT 340 (807)
T ss_pred cceeeeeeeecccc---eeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHH
Confidence 47778877776543 37899999999999999999999999999999874 22232223333332221100000
Q ss_pred -H---hhhceEEecCCCCc----c--ccHHHHHhcCCCCCCHHHHHHHHHHh-------chHHHHHhCCCcccccccCCC
Q 041277 435 -L---RSQMGLVSQEPALF----A--TSIKENILFGKEDASMEEVIEAAKAS-------NAHNFIRQLPQQYDTQVGERG 497 (1133)
Q Consensus 435 -~---r~~i~~v~Q~~~l~----~--~ti~eni~~~~~~~~~~~~~~~~~~~-------~~~~~i~~l~~g~~t~~~~~g 497 (1133)
+ .++..++-.+.-|. . .|+.|-+ +++.+-++.. .+...+..| |++..+-+++
T Consensus 341 vl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl---------~~v~~ELraiGA~sAEarARRILAGL--GFskEMQ~rP 409 (807)
T KOG0066|consen 341 VLKADKKRLALLEEEAKLMSQIEEGDTTAAERL---------KEVADELRAIGADSAEARARRILAGL--GFSKEMQERP 409 (807)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHH---------HHHHHHHHHhccccchhHHHHHHhhc--CCChhHhcCC
Confidence 0 01111111111100 0 0111111 1111111111 122233333 5666666665
Q ss_pred C-CCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCe
Q 041277 498 V-QMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQ 574 (1133)
Q Consensus 498 ~-~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~ 574 (1133)
. .+|||-|-||+|||||+..|-+|.|||||.+||....--+-+.|+.+ .+|.++|+|+-.++.. |..|+.|++-+
T Consensus 410 t~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW--kKTLLIVSHDQgFLD~VCtdIIHLD~qk 486 (807)
T KOG0066|consen 410 TTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQGFLDSVCTDIIHLDNQK 486 (807)
T ss_pred ccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhh--hheeEEEecccchHHHHHHHHhhhhhhh
Confidence 4 69999999999999999999999999999999998766666666665 4799999999999987 88888887644
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-20 Score=205.14 Aligned_cols=125 Identities=34% Similarity=0.572 Sum_probs=108.4
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcc
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHI 1080 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~i 1080 (1133)
.|+++||+|+|++ .++|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|.+||.|+...+...+|+.+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 4899999999963 3589999999999999999999999999999999999999999999999999988888899999
Q ss_pred cccccccccccccHHHHhccCCC-CCCCHHHHHHHHHHcchH-HHHhhcc
Q 041277 1081 ALVSQEPTLFAGTIRENIAYGAS-DEIDESEIVEAAKAANAH-DFIAGLN 1128 (1133)
Q Consensus 1081 siV~Qdp~LF~gTIreNI~~g~~-~~~sdeei~~Al~~a~l~-dfI~~LP 1128 (1133)
++|||+|.+|+.|++||+.++.. ....++++.++++..++. ++..+-|
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 129 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDV 129 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCc
Confidence 99999999999999999987632 112345788888998885 5555443
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.7e-21 Score=201.98 Aligned_cols=124 Identities=21% Similarity=0.433 Sum_probs=105.8
Q ss_pred EEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcccc
Q 041277 1003 ELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIAL 1082 (1133)
Q Consensus 1003 ~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isi 1082 (1133)
+++||+++|++. .++|+|+||+|++||++||+||+|||||||+++|+|+++|++|+|.+||.++.. ...|++++|
T Consensus 1 ~~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~ 75 (205)
T cd03226 1 RIENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGY 75 (205)
T ss_pred CcccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEE
Confidence 478999999631 358999999999999999999999999999999999999999999999998864 567889999
Q ss_pred ccccc--ccccccHHHHhccCCCC-CCCHHHHHHHHHHcchHHHHhhccccc
Q 041277 1083 VSQEP--TLFAGTIRENIAYGASD-EIDESEIVEAAKAANAHDFIAGLNEGY 1131 (1133)
Q Consensus 1083 V~Qdp--~LF~gTIreNI~~g~~~-~~sdeei~~Al~~a~l~dfI~~LP~G~ 1131 (1133)
|||+| .+|+.|++||+.++.+. ...++++.++++..++.++..+.|..|
T Consensus 76 ~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 127 (205)
T cd03226 76 VMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSL 127 (205)
T ss_pred EecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhC
Confidence 99998 47889999999886431 123457899999999998887777544
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-20 Score=209.34 Aligned_cols=130 Identities=22% Similarity=0.460 Sum_probs=112.2
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcc
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHI 1080 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~i 1080 (1133)
-|+++||+++|+.+ ..++|+|+||+|++||.+||+||+|||||||+++|+|+++|++|+|++||.++.+.+...+|+.|
T Consensus 5 ~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 38999999999642 33599999999999999999999999999999999999999999999999999988888889999
Q ss_pred ccccccc--ccccccHHHHhccCCCC-CCC----HHHHHHHHHHcchHHHHhhccccc
Q 041277 1081 ALVSQEP--TLFAGTIRENIAYGASD-EID----ESEIVEAAKAANAHDFIAGLNEGY 1131 (1133)
Q Consensus 1081 siV~Qdp--~LF~gTIreNI~~g~~~-~~s----deei~~Al~~a~l~dfI~~LP~G~ 1131 (1133)
+||||+| .+++.|++|||.++... ..+ ++++.++++..++.+++.+.|..+
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~L 141 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRL 141 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccC
Confidence 9999998 57788999999875311 122 345788999999999998877644
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-20 Score=210.44 Aligned_cols=128 Identities=30% Similarity=0.504 Sum_probs=106.1
Q ss_pred EEEEeEEEECCCCC--CCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCC--hhHHh
Q 041277 1002 IELQNVHFAYPARP--DVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYH--LRSLR 1077 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~--~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~--l~~LR 1077 (1133)
|+++||+++|+... ..++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+ ...+|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 89999999997421 136999999999999999999999999999999999999999999999999998754 45789
Q ss_pred hccccccccc--ccccccHHHHhccCCC-CCCCH----HHHHHHHHHcchH--HHHhhccc
Q 041277 1078 RHIALVSQEP--TLFAGTIRENIAYGAS-DEIDE----SEIVEAAKAANAH--DFIAGLNE 1129 (1133)
Q Consensus 1078 ~~isiV~Qdp--~LF~gTIreNI~~g~~-~~~sd----eei~~Al~~a~l~--dfI~~LP~ 1129 (1133)
++|+||||+| .+|+.|++|||.++.. ...+. +++.++++.+++. ++..+.|.
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~ 143 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPF 143 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcc
Confidence 9999999998 5889999999987631 11232 3577889999986 55544443
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-20 Score=201.43 Aligned_cols=123 Identities=25% Similarity=0.428 Sum_probs=105.2
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhccc
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIA 1081 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~is 1081 (1133)
|+++||+|+|++ .++|+|+||++++| .+||+||||||||||+++|.|+++|++|+|.+||.++.+.+ ..+|++++
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 75 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIG 75 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheE
Confidence 579999999963 35899999999999 99999999999999999999999999999999999998877 78899999
Q ss_pred ccccccccccc-cHHHHhccCC-----CCCCCHHHHHHHHHHcchHHHHhhccc
Q 041277 1082 LVSQEPTLFAG-TIRENIAYGA-----SDEIDESEIVEAAKAANAHDFIAGLNE 1129 (1133)
Q Consensus 1082 iV~Qdp~LF~g-TIreNI~~g~-----~~~~sdeei~~Al~~a~l~dfI~~LP~ 1129 (1133)
+|||+|.+|.+ |++||+.+.. +....++++.++++..++.++.++.|.
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 129 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIG 129 (211)
T ss_pred EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchh
Confidence 99999999986 9999997631 111124567889999999887665443
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-20 Score=210.43 Aligned_cols=129 Identities=29% Similarity=0.469 Sum_probs=106.0
Q ss_pred cEEEEeEEEECCCCC--CCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCC----Chh
Q 041277 1001 NIELQNVHFAYPARP--DVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSY----HLR 1074 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~--~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i----~l~ 1074 (1133)
.|+++||+|+|++++ ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++... +..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 389999999996422 13699999999999999999999999999999999999999999999999999764 346
Q ss_pred HHhhccccccccc--ccccccHHHHhccCCCC-CCC----HHHHHHHHHHcchH-HHHhhccc
Q 041277 1075 SLRRHIALVSQEP--TLFAGTIRENIAYGASD-EID----ESEIVEAAKAANAH-DFIAGLNE 1129 (1133)
Q Consensus 1075 ~LR~~isiV~Qdp--~LF~gTIreNI~~g~~~-~~s----deei~~Al~~a~l~-dfI~~LP~ 1129 (1133)
.+|++|+||||+| .+|..|++|||.++... ..+ ++.+.++++..++. ++..+.|.
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~ 144 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPF 144 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcc
Confidence 7899999999998 68999999999986311 122 34567788888886 55554443
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-20 Score=201.75 Aligned_cols=127 Identities=30% Similarity=0.432 Sum_probs=108.0
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChh---HHhh
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLR---SLRR 1078 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~---~LR~ 1078 (1133)
|+++|++++|++ +.++|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|.+||.|+.+++.. .+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 789999999952 23589999999999999999999999999999999999999999999999999887643 4788
Q ss_pred ccccccccccccc-ccHHHHhccCCC-----CCCCHHHHHHHHHHcchHHHHhhcccc
Q 041277 1079 HIALVSQEPTLFA-GTIRENIAYGAS-----DEIDESEIVEAAKAANAHDFIAGLNEG 1130 (1133)
Q Consensus 1079 ~isiV~Qdp~LF~-gTIreNI~~g~~-----~~~sdeei~~Al~~a~l~dfI~~LP~G 1130 (1133)
++++|||+|.+|. .|++||+.++.. ....+++++++++..++.+...+.|..
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 137 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQ 137 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhh
Confidence 9999999999996 699999987521 112346788999999998887766543
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-20 Score=201.97 Aligned_cols=128 Identities=29% Similarity=0.427 Sum_probs=107.4
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCCh---hHHhh
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHL---RSLRR 1078 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l---~~LR~ 1078 (1133)
|+++||+++|+++ .++|+|+||++++||++||+||||||||||+++|.|+++|++|+|.+||.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 5789999999632 358999999999999999999999999999999999999999999999999987764 35788
Q ss_pred ccccccccccccc-ccHHHHhccCCC-CCC----CHHHHHHHHHHcchHHHHhhccccc
Q 041277 1079 HIALVSQEPTLFA-GTIRENIAYGAS-DEI----DESEIVEAAKAANAHDFIAGLNEGY 1131 (1133)
Q Consensus 1079 ~isiV~Qdp~LF~-gTIreNI~~g~~-~~~----sdeei~~Al~~a~l~dfI~~LP~G~ 1131 (1133)
++++|||+|.+|. .|++||+.++.. ... .++++.++++..++.+...+.|..+
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 137 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAEL 137 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhc
Confidence 9999999999998 499999987521 011 2356788999999988777666543
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2e-20 Score=208.32 Aligned_cols=131 Identities=32% Similarity=0.539 Sum_probs=111.1
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcc
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHI 1080 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~i 1080 (1133)
-|+++||+++|++....++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999743334589999999999999999999999999999999999999999999999999888888899999
Q ss_pred ccccccc--ccccccHHHHhccCCC-CCCCH----HHHHHHHHHcchHHHHhhccccc
Q 041277 1081 ALVSQEP--TLFAGTIRENIAYGAS-DEIDE----SEIVEAAKAANAHDFIAGLNEGY 1131 (1133)
Q Consensus 1081 siV~Qdp--~LF~gTIreNI~~g~~-~~~sd----eei~~Al~~a~l~dfI~~LP~G~ 1131 (1133)
+||||+| .+++.|+.|||.++.. ...+. +++.++++.+++.++..+.|..|
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 141 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARL 141 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccC
Confidence 9999998 4778999999987521 12233 34678889999988877665443
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-20 Score=202.90 Aligned_cols=128 Identities=30% Similarity=0.442 Sum_probs=106.3
Q ss_pred EEEEeEEEECCCCC-CCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhH----H
Q 041277 1002 IELQNVHFAYPARP-DVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRS----L 1076 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~----L 1076 (1133)
|+++||+++|++.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 57899999996421 146999999999999999999999999999999999999999999999999998877433 4
Q ss_pred hhcccccccccccccc-cHHHHhccCCC-CCC----CHHHHHHHHHHcchHHHHhhccc
Q 041277 1077 RRHIALVSQEPTLFAG-TIRENIAYGAS-DEI----DESEIVEAAKAANAHDFIAGLNE 1129 (1133)
Q Consensus 1077 R~~isiV~Qdp~LF~g-TIreNI~~g~~-~~~----sdeei~~Al~~a~l~dfI~~LP~ 1129 (1133)
|+++++|||+|.+|.+ |++||+.++.. ... .++++.++++..++.++..+.|.
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 139 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPS 139 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChh
Confidence 6789999999999986 99999987532 111 24568889999999877665543
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-20 Score=210.03 Aligned_cols=128 Identities=25% Similarity=0.476 Sum_probs=105.8
Q ss_pred EEEEeEEEECCCCCC--CccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCC----CChhH
Q 041277 1002 IELQNVHFAYPARPD--VMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRS----YHLRS 1075 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~--~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~----i~l~~ 1075 (1133)
|+|+||+|+|+.... .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|++||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 789999999973211 258999999999999999999999999999999999999999999999999863 34667
Q ss_pred Hhhccccccccc--ccccccHHHHhccCCCC-CCC----HHHHHHHHHHcchH-HHHhhccc
Q 041277 1076 LRRHIALVSQEP--TLFAGTIRENIAYGASD-EID----ESEIVEAAKAANAH-DFIAGLNE 1129 (1133)
Q Consensus 1076 LR~~isiV~Qdp--~LF~gTIreNI~~g~~~-~~s----deei~~Al~~a~l~-dfI~~LP~ 1129 (1133)
+|+++++|+|+| .+|..|+.||+.++... ..+ ++++.++++.+++. ++..+.|.
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~ 143 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPF 143 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcc
Confidence 899999999998 79999999999987321 122 33567788888984 56555544
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-20 Score=207.89 Aligned_cols=130 Identities=28% Similarity=0.564 Sum_probs=109.9
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcc
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHI 1080 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~i 1080 (1133)
.|+++|++++|+++ +.++|+|+||+|++||.+||+||+|||||||+++|+|+++|++|+|.+||.++...+...+|+++
T Consensus 7 ~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 7 MIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred EEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 59999999999632 34689999999999999999999999999999999999999999999999999888888899999
Q ss_pred ccccccc--ccccccHHHHhccCCCC-CCCH----HHHHHHHHHcchHHHHhhccccc
Q 041277 1081 ALVSQEP--TLFAGTIRENIAYGASD-EIDE----SEIVEAAKAANAHDFIAGLNEGY 1131 (1133)
Q Consensus 1081 siV~Qdp--~LF~gTIreNI~~g~~~-~~sd----eei~~Al~~a~l~dfI~~LP~G~ 1131 (1133)
+||||+| .++..|++|||.++... ..+. +.+.++++..++.++..+.|..|
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 143 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNL 143 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccC
Confidence 9999998 46678999999875211 1222 24677889999998887766543
|
|
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.82 E-value=7e-20 Score=188.80 Aligned_cols=85 Identities=27% Similarity=0.296 Sum_probs=77.3
Q ss_pred HHhCCCcccccccCCCCCCChHHHHHHHHHHHHh----hCCCEEEEeCcccCCChHHHHHHHHHHHHHhC-CCeEEEEec
Q 041277 482 IRQLPQQYDTQVGERGVQMSGGQKQRIAIARAII----KAPRILLLDEATSALDSESERVVQEALDKAVV-GRTTIIIAH 556 (1133)
Q Consensus 482 i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~----~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH 556 (1133)
+..+|+|..|++ ||||||||++|||++. .+|+++++|||+++||+.....+.+.+.+..+ ++|+|++||
T Consensus 83 ~~~~~~~~~~~~------LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH 156 (178)
T cd03239 83 YFLVLQGKVEQI------LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITL 156 (178)
T ss_pred eEEecCCcCccc------CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 556799988887 9999999999999995 69999999999999999999999999988754 689999999
Q ss_pred CcchhhcCCEEEEEeC
Q 041277 557 RLSTIRNADVIAVVQD 572 (1133)
Q Consensus 557 ~~~~~~~~d~i~~l~~ 572 (1133)
+.+.+..+|+++.+.+
T Consensus 157 ~~~~~~~adrvi~i~~ 172 (178)
T cd03239 157 KKEMFENADKLIGVLF 172 (178)
T ss_pred CHHHHhhCCeEEEEEE
Confidence 9998888999999975
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.2e-20 Score=201.36 Aligned_cols=125 Identities=20% Similarity=0.321 Sum_probs=104.0
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhccc
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIA 1081 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~is 1081 (1133)
|+++||+++|++. ..++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++.... ..+|++++
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-KAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-HHHhhhEE
Confidence 5799999999642 145999999999999999999999999999999999999999999999999987643 67788999
Q ss_pred ccccccccc-cccHHHHhccCC-----CCCCCHHHHHHHHHHcchHHHHhhcc
Q 041277 1082 LVSQEPTLF-AGTIRENIAYGA-----SDEIDESEIVEAAKAANAHDFIAGLN 1128 (1133)
Q Consensus 1082 iV~Qdp~LF-~gTIreNI~~g~-----~~~~sdeei~~Al~~a~l~dfI~~LP 1128 (1133)
+|||+|.+| +.|++||+.++. +....++++.++++..++.+...+.|
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 131 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRA 131 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChh
Confidence 999999999 679999998642 11111346778889889877665544
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.3e-20 Score=199.34 Aligned_cols=123 Identities=20% Similarity=0.330 Sum_probs=106.0
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhccc
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIA 1081 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~is 1081 (1133)
|+++||+++|++ .++|+|+||++++||.++|+|++|||||||+++|.|+.+|++|+|.+||.++.+. ..+|++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~ 75 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIG 75 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEE
Confidence 579999999953 3599999999999999999999999999999999999999999999999998765 56788999
Q ss_pred ccccccccc-cccHHHHhccCCC-CCCCHHHHHHHHHHcchHHHHhhccc
Q 041277 1082 LVSQEPTLF-AGTIRENIAYGAS-DEIDESEIVEAAKAANAHDFIAGLNE 1129 (1133)
Q Consensus 1082 iV~Qdp~LF-~gTIreNI~~g~~-~~~sdeei~~Al~~a~l~dfI~~LP~ 1129 (1133)
+|||++.+| +.|++||+.++.. ...+++++.++++..++.+...+.|.
T Consensus 76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 125 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVK 125 (208)
T ss_pred EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHh
Confidence 999999887 5799999977521 12356788999999999887766443
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.5e-20 Score=202.79 Aligned_cols=129 Identities=26% Similarity=0.375 Sum_probs=107.9
Q ss_pred EEEEeEEEECCCCC-CCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChh---HHh
Q 041277 1002 IELQNVHFAYPARP-DVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLR---SLR 1077 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~---~LR 1077 (1133)
|+++||+++|+++. ..++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++...+.. .+|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999996431 12699999999999999999999999999999999999999999999999999877654 358
Q ss_pred hccccccccccccc-ccHHHHhccCCC--C---CCCHHHHHHHHHHcchHHHHhhcccc
Q 041277 1078 RHIALVSQEPTLFA-GTIRENIAYGAS--D---EIDESEIVEAAKAANAHDFIAGLNEG 1130 (1133)
Q Consensus 1078 ~~isiV~Qdp~LF~-gTIreNI~~g~~--~---~~sdeei~~Al~~a~l~dfI~~LP~G 1130 (1133)
+++++|||+|.+|. .|++||+.++.. . ...++++.++++..++.+...+.|..
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 140 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQ 140 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhh
Confidence 89999999999997 699999986421 0 11245788899999998887765543
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.1e-20 Score=199.58 Aligned_cols=119 Identities=24% Similarity=0.447 Sum_probs=104.7
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcc
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHI 1080 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~i 1080 (1133)
-|+++||+++|++ .++|+|+||+|++||.+||+||+|||||||+++|.|+++|++|+|.+||.++.+++...+|+++
T Consensus 7 ~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 7 LLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred eEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 5999999999963 3589999999999999999999999999999999999999999999999999998888899999
Q ss_pred cccccccccccccHHHHhccCC---CCCCCHHHHHHHHHHcchHH
Q 041277 1081 ALVSQEPTLFAGTIRENIAYGA---SDEIDESEIVEAAKAANAHD 1122 (1133)
Q Consensus 1081 siV~Qdp~LF~gTIreNI~~g~---~~~~sdeei~~Al~~a~l~d 1122 (1133)
++|||+|.+|..|++||+.++. .....++++.++++..++.+
T Consensus 84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~ 128 (225)
T PRK10247 84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPD 128 (225)
T ss_pred EEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCCh
Confidence 9999999999999999997631 11123456778899988853
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.7e-20 Score=200.89 Aligned_cols=126 Identities=25% Similarity=0.379 Sum_probs=105.3
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhH---Hhh
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRS---LRR 1078 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~---LR~ 1078 (1133)
|+++||+++|+. +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.+++... +|+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecC--CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 789999999952 235899999999999999999999999999999999999999999999999998876544 789
Q ss_pred ccccccccccc-ccccHHHHhccCCC-CCCC----HHHHHHHHHHcchHHHHhhccc
Q 041277 1079 HIALVSQEPTL-FAGTIRENIAYGAS-DEID----ESEIVEAAKAANAHDFIAGLNE 1129 (1133)
Q Consensus 1079 ~isiV~Qdp~L-F~gTIreNI~~g~~-~~~s----deei~~Al~~a~l~dfI~~LP~ 1129 (1133)
.++||||+|.+ +..|++||+.++.. ...+ ++++.++++..++.+...+.|.
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 136 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPI 136 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCch
Confidence 99999999987 56799999987521 1122 2356778899999887766554
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.7e-20 Score=200.74 Aligned_cols=131 Identities=21% Similarity=0.324 Sum_probs=108.9
Q ss_pred cEEEEeEEEECCCCCC-CccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhH---H
Q 041277 1001 NIELQNVHFAYPARPD-VMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRS---L 1076 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~-~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~---L 1076 (1133)
-|+++||+++|+++.. .++|+|+||+|++||.+||+||+|||||||+++|.|+++|++|+|.+||.++.+.+... .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 4899999999964222 25899999999999999999999999999999999999999999999999998887654 2
Q ss_pred -hhcccccccccccccc-cHHHHhccCC-----CCCCCHHHHHHHHHHcchHHHHhhccccc
Q 041277 1077 -RRHIALVSQEPTLFAG-TIRENIAYGA-----SDEIDESEIVEAAKAANAHDFIAGLNEGY 1131 (1133)
Q Consensus 1077 -R~~isiV~Qdp~LF~g-TIreNI~~g~-----~~~~sdeei~~Al~~a~l~dfI~~LP~G~ 1131 (1133)
++++++|||+|.+|.+ |++||+.++. +.....+++.++++..++.++..+.|..|
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 147 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQL 147 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhC
Confidence 3689999999999985 9999997631 11112457888999999998887766543
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.7e-20 Score=206.15 Aligned_cols=128 Identities=28% Similarity=0.498 Sum_probs=110.8
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcc
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHI 1080 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~i 1080 (1133)
.|+++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+.+.+...+|+.+
T Consensus 11 ~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 11 TFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred eEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 5999999999963 3589999999999999999999999999999999999999999999999999988888999999
Q ss_pred cccccccccccc-cHHHHhccCCC---------CCCCHHHHHHHHHHcchHHHHhhccccc
Q 041277 1081 ALVSQEPTLFAG-TIRENIAYGAS---------DEIDESEIVEAAKAANAHDFIAGLNEGY 1131 (1133)
Q Consensus 1081 siV~Qdp~LF~g-TIreNI~~g~~---------~~~sdeei~~Al~~a~l~dfI~~LP~G~ 1131 (1133)
++|||++.+|.+ |++||+.++.. ....++++.++++.+++.+++.+.|..+
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 148 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSL 148 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccC
Confidence 999999877665 99999987531 0112456889999999988877766543
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.7e-20 Score=202.88 Aligned_cols=126 Identities=28% Similarity=0.453 Sum_probs=105.8
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCCh---hHHhh
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHL---RSLRR 1078 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l---~~LR~ 1078 (1133)
|+++||+++|+. +.++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++.+++. ..+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 789999999961 2358999999999999999999999999999999999999999999999999987664 45789
Q ss_pred ccccccccccccc-ccHHHHhccCCCC-------------CCCHHHHHHHHHHcchHHHHhhccc
Q 041277 1079 HIALVSQEPTLFA-GTIRENIAYGASD-------------EIDESEIVEAAKAANAHDFIAGLNE 1129 (1133)
Q Consensus 1079 ~isiV~Qdp~LF~-gTIreNI~~g~~~-------------~~sdeei~~Al~~a~l~dfI~~LP~ 1129 (1133)
++++|||++.+|. .|++||+.++... ...++++.++++..++.++..+.|.
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 144 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRAD 144 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcc
Confidence 9999999999886 6999999875311 1124567888999999877665443
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-20 Score=200.66 Aligned_cols=123 Identities=30% Similarity=0.475 Sum_probs=104.1
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhccc
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIA 1081 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~is 1081 (1133)
|+++||+++|++ .++|+|+||+|++||.+||+||+|||||||+++|.|+++|++|+|.+||.++.+.+ ..|++++
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~--~~~~~i~ 75 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP--PERRNIG 75 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc--hhhccEE
Confidence 578999999963 35899999999999999999999999999999999999999999999999998654 3578999
Q ss_pred cccccccccc-ccHHHHhccCCCC-----CCCHHHHHHHHHHcchHHHHhhccc
Q 041277 1082 LVSQEPTLFA-GTIRENIAYGASD-----EIDESEIVEAAKAANAHDFIAGLNE 1129 (1133)
Q Consensus 1082 iV~Qdp~LF~-gTIreNI~~g~~~-----~~sdeei~~Al~~a~l~dfI~~LP~ 1129 (1133)
+|||+|.+|. .|++||+.++... ...++++.++++..++.++..+.|.
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 129 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPH 129 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChh
Confidence 9999999886 6999999875221 1123467889999999888776554
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.2e-20 Score=195.73 Aligned_cols=121 Identities=22% Similarity=0.402 Sum_probs=102.9
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhccc
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIA 1081 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~is 1081 (1133)
|+++||+++|++ .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|++||.++.. ....+|++++
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~ 77 (200)
T PRK13540 2 LDVIELDFDYHD---QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLC 77 (200)
T ss_pred EEEEEEEEEeCC---eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheE
Confidence 789999999963 358999999999999999999999999999999999999999999999999875 3467889999
Q ss_pred ccccccccc-cccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhh
Q 041277 1082 LVSQEPTLF-AGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAG 1126 (1133)
Q Consensus 1082 iV~Qdp~LF-~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~ 1126 (1133)
++||++.+| ..|++||+.++......++++.++++..++.+....
T Consensus 78 ~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 123 (200)
T PRK13540 78 FVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDY 123 (200)
T ss_pred EeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhC
Confidence 999999986 579999998763111234568888888888665543
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.2e-20 Score=205.38 Aligned_cols=131 Identities=24% Similarity=0.456 Sum_probs=111.9
Q ss_pred ccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCC---CeEEECCcccCCCChhHH
Q 041277 1000 GNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLK---GDVKIDDRDIRSYHLRSL 1076 (1133)
Q Consensus 1000 g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~---G~I~IdG~dI~~i~l~~L 1076 (1133)
+.|+++|++|+|++. ..++|+|+||+|++||.+||+|++|||||||+++|+|+++|++ |+|.+||.++...+...+
T Consensus 4 ~~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 4 NIVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred ceEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 469999999999642 2358999999999999999999999999999999999999987 899999999988888888
Q ss_pred hhccccccccc--ccccccHHHHhccCCCC-CCCH----HHHHHHHHHcchHHHHhhccccc
Q 041277 1077 RRHIALVSQEP--TLFAGTIRENIAYGASD-EIDE----SEIVEAAKAANAHDFIAGLNEGY 1131 (1133)
Q Consensus 1077 R~~isiV~Qdp--~LF~gTIreNI~~g~~~-~~sd----eei~~Al~~a~l~dfI~~LP~G~ 1131 (1133)
|++++||||+| .+|+.|++|||.++... ..+. +++.++++..++.++..+.|..+
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~L 144 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANL 144 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccC
Confidence 99999999999 46789999999876321 2233 45788999999999888776543
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.6e-20 Score=202.78 Aligned_cols=126 Identities=29% Similarity=0.461 Sum_probs=106.5
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCC---hhHHhh
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYH---LRSLRR 1078 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~---l~~LR~ 1078 (1133)
++++||+++|++ +.++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++...+ ...+|+
T Consensus 1 l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCC--ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 578999999963 145899999999999999999999999999999999999999999999999998877 567889
Q ss_pred ccccccccccccc-ccHHHHhccCCCC-------------CCCHHHHHHHHHHcchHHHHhhccc
Q 041277 1079 HIALVSQEPTLFA-GTIRENIAYGASD-------------EIDESEIVEAAKAANAHDFIAGLNE 1129 (1133)
Q Consensus 1079 ~isiV~Qdp~LF~-gTIreNI~~g~~~-------------~~sdeei~~Al~~a~l~dfI~~LP~ 1129 (1133)
++++|||++.+|. .|++||+.++... ...++++.++++..++.+...+.|.
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 143 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRAD 143 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcc
Confidence 9999999999887 6999999864211 1124567888999999877665443
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.7e-20 Score=191.30 Aligned_cols=128 Identities=30% Similarity=0.435 Sum_probs=105.1
Q ss_pred EEEEeEEEECCCCCC-CccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhH---H-
Q 041277 1002 IELQNVHFAYPARPD-VMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRS---L- 1076 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~-~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~---L- 1076 (1133)
++++||+-.|..... ..+|+|+||+|++||.|||+||||||||||+++|.++-.|++|.|.++|.|+..++-+. +
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 679999999964322 46999999999999999999999999999999999999999999999999999998433 3
Q ss_pred hhcccccccccccccc-cHHHHhcc----CCCCC-CCHHHHHHHHHHcchHHHHh-hccc
Q 041277 1077 RRHIALVSQEPTLFAG-TIRENIAY----GASDE-IDESEIVEAAKAANAHDFIA-GLNE 1129 (1133)
Q Consensus 1077 R~~isiV~Qdp~LF~g-TIreNI~~----g~~~~-~sdeei~~Al~~a~l~dfI~-~LP~ 1129 (1133)
|++||+|+|+..|+.. |++|||.+ ..... ..++.+.+.++..++.+... +.|.
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~ 141 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPS 141 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCch
Confidence 5679999999998865 99999984 21111 12456777888889987766 5564
|
|
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2e-19 Score=177.28 Aligned_cols=211 Identities=25% Similarity=0.357 Sum_probs=157.0
Q ss_pred cccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCC-CCH----
Q 041277 358 LGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDK-LQL---- 432 (1133)
Q Consensus 358 ~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~-~~~---- 432 (1133)
+..|++.++.|+|+... |++-|+|++++.|....+||.||||||||+++|.|-.-...|.|.+.|.+--. -..
T Consensus 11 ~~aievsgl~f~y~~~d--P~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sg 88 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVSD--PIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSG 88 (291)
T ss_pred cceEEEeccEEecccCC--ceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccC
Confidence 45799999999998643 68999999999999999999999999999999999877777999999976432 111
Q ss_pred ------HHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHH
Q 041277 433 ------KWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQ 506 (1133)
Q Consensus 433 ------~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 506 (1133)
.+|++..++--.-|.--.-++.+ +.||-...+.++-.+..+. +|-.+.-+-..+|-|||+
T Consensus 89 dl~YLGgeW~~~~~~agevplq~D~sae~-mifgV~g~dp~Rre~LI~i-------------LDIdl~WRmHkvSDGqrR 154 (291)
T KOG2355|consen 89 DLSYLGGEWSKTVGIAGEVPLQGDISAEH-MIFGVGGDDPERREKLIDI-------------LDIDLRWRMHKVSDGQRR 154 (291)
T ss_pred ceeEecccccccccccccccccccccHHH-HHhhccCCChhHhhhhhhh-------------eeccceEEEeeccccchh
Confidence 12344444333222111224433 3344332222222221111 233344456789999999
Q ss_pred HHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHH--hCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcch
Q 041277 507 RIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKA--VVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDE 583 (1133)
Q Consensus 507 ri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~--~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 583 (1133)
|+-|+..|++.=++|+|||.|--||...+..+.+.+++. .+|.|++..||-.+-++. +.+++.+.+|+++..-++++
T Consensus 155 RVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~~~~ 234 (291)
T KOG2355|consen 155 RVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNLKYQK 234 (291)
T ss_pred hhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeeccccch
Confidence 999999999999999999999999999999999999875 368999999999998876 99999999999987544444
Q ss_pred h
Q 041277 584 L 584 (1133)
Q Consensus 584 l 584 (1133)
+
T Consensus 235 i 235 (291)
T KOG2355|consen 235 I 235 (291)
T ss_pred h
Confidence 3
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.7e-20 Score=199.81 Aligned_cols=129 Identities=24% Similarity=0.353 Sum_probs=106.2
Q ss_pred EEEEeEEEECCCCC-CCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhH---Hh
Q 041277 1002 IELQNVHFAYPARP-DVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRS---LR 1077 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~---LR 1077 (1133)
|+++||+++|++.. ..++|+|+||+|++||.+||+||+|||||||+++|+|+++|++|+|.+||.|+.+++... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 78999999996422 236899999999999999999999999999999999999999999999999998887654 34
Q ss_pred -hccccccccccccc-ccHHHHhccCCC----C-CCCHHHHHHHHHHcchHHHHhhcccc
Q 041277 1078 -RHIALVSQEPTLFA-GTIRENIAYGAS----D-EIDESEIVEAAKAANAHDFIAGLNEG 1130 (1133)
Q Consensus 1078 -~~isiV~Qdp~LF~-gTIreNI~~g~~----~-~~sdeei~~Al~~a~l~dfI~~LP~G 1130 (1133)
++++||||+|.+|. .|++||+.++.. + ...++++.++++..++++...+.|..
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 141 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSE 141 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhh
Confidence 68999999999995 699999986311 1 11134677889999998777665543
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.9e-20 Score=205.98 Aligned_cols=128 Identities=22% Similarity=0.420 Sum_probs=110.1
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhccc
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIA 1081 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~is 1081 (1133)
++++||+++|+.+ .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++...+...++++++
T Consensus 4 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 4 IETRDLCYSYSGS--KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred EEEEEEEEEeCCC--CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 7899999999632 34899999999999999999999999999999999999999999999999998888888999999
Q ss_pred cccccc--ccccccHHHHhccCCC-CCCC----HHHHHHHHHHcchHHHHhhccccc
Q 041277 1082 LVSQEP--TLFAGTIRENIAYGAS-DEID----ESEIVEAAKAANAHDFIAGLNEGY 1131 (1133)
Q Consensus 1082 iV~Qdp--~LF~gTIreNI~~g~~-~~~s----deei~~Al~~a~l~dfI~~LP~G~ 1131 (1133)
+|||+| .+|+.|++||+.++.. ...+ ++.+.++++..++.++..+.|..|
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 138 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHL 138 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccC
Confidence 999998 4888999999987531 1122 345788999999998887776543
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.2e-20 Score=199.06 Aligned_cols=125 Identities=26% Similarity=0.451 Sum_probs=104.7
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCC--CChhHHhhc
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRS--YHLRSLRRH 1079 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~--i~l~~LR~~ 1079 (1133)
|+++||+++|++ .++|+|+||+++|||++||+||+|||||||+++|+|+++|++|+|.+||.++.. .+...+|++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEECC---eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 578999999964 358999999999999999999999999999999999999999999999999853 455678999
Q ss_pred cccccccccccc-ccHHHHhccCCC--CCC----CHHHHHHHHHHcchHHHHhhccc
Q 041277 1080 IALVSQEPTLFA-GTIRENIAYGAS--DEI----DESEIVEAAKAANAHDFIAGLNE 1129 (1133)
Q Consensus 1080 isiV~Qdp~LF~-gTIreNI~~g~~--~~~----sdeei~~Al~~a~l~dfI~~LP~ 1129 (1133)
++||||+|.+|. .|++||+.++.. ... .++++.++++..++.+...+.|.
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 134 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPA 134 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCcc
Confidence 999999999986 699999987521 111 23457778888888877766554
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.7e-20 Score=194.82 Aligned_cols=122 Identities=20% Similarity=0.374 Sum_probs=105.9
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhccc
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIA 1081 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~is 1081 (1133)
++++||+++|++ .++|+|+||+|++||++||+|++|||||||+++|+|+++|++|+|.+||.++...+ ..+|++++
T Consensus 1 l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (201)
T cd03231 1 LEADELTCERDG---RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLL 76 (201)
T ss_pred CEEEEEEEEeCC---ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheE
Confidence 578999999963 35899999999999999999999999999999999999999999999999987654 56889999
Q ss_pred ccccccccc-cccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcc
Q 041277 1082 LVSQEPTLF-AGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLN 1128 (1133)
Q Consensus 1082 iV~Qdp~LF-~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP 1128 (1133)
++||++.++ +.|++||+.+..+ ..+++++.++++..++.++..+.+
T Consensus 77 ~~~q~~~~~~~~tv~e~l~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~ 123 (201)
T cd03231 77 YLGHAPGIKTTLSVLENLRFWHA-DHSDEQVEEALARVGLNGFEDRPV 123 (201)
T ss_pred EeccccccCCCcCHHHHHHhhcc-cccHHHHHHHHHHcCChhhhcCch
Confidence 999999886 6899999987643 346778899999999987765443
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 1133 | ||||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 0.0 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 0.0 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 1e-153 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 8e-86 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 4e-53 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 6e-85 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 7e-53 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 6e-63 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 2e-35 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 4e-60 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 3e-44 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 6e-60 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 2e-44 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 8e-60 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 1e-35 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 1e-51 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 2e-40 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 3e-51 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 6e-18 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 3e-51 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 5e-18 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 3e-51 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 5e-18 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 6e-51 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 1e-17 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 8e-51 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 4e-18 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 5e-50 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 4e-18 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 5e-50 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 4e-18 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 1e-49 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 6e-21 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 3e-49 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 1e-14 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 3e-48 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 4e-23 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 1e-47 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 2e-30 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 7e-47 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 4e-28 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 1e-45 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 4e-28 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 4e-44 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 3e-28 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 1e-42 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 9e-39 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 2e-15 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 5e-06 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 2e-14 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 6e-06 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 3e-14 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 1e-13 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 2e-04 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 1e-13 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 4e-13 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 5e-04 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 1e-12 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 1e-12 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 1e-06 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 2e-12 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 3e-12 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-11 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 4e-11 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 8e-11 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 2e-10 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 2e-10 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 6e-04 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 2e-10 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 3e-10 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 6e-04 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 3e-10 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 3e-04 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-09 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 5e-04 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-09 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 5e-04 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 2e-09 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 2e-09 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 2e-09 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 2e-04 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 3e-09 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 3e-09 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 8e-09 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 2e-08 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 2e-08 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 2e-08 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 2e-08 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 2e-08 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 3e-04 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 2e-08 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 6e-05 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 4e-08 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 2e-07 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 6e-07 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 6e-07 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 7e-07 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 7e-07 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 8e-07 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 2e-06 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 3e-06 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 3e-06 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 4e-06 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 4e-06 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 6e-06 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 9e-06 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 1e-05 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 1e-05 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 1e-05 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 2e-04 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 1e-05 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 2e-05 | ||
| 1g29_1 | 372 | Malk Length = 372 | 8e-05 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 4e-04 |
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1133 | |||
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 0.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 0.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 0.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 1e-160 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 1e-165 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 2e-80 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-163 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-106 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-159 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-103 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 1e-156 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 5e-95 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 1e-151 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 2e-65 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 1e-140 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 6e-65 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 1e-135 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 2e-61 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 1e-124 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 7e-76 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 1e-122 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 1e-55 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 1e-101 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 2e-55 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 1e-58 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 7e-23 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 1e-43 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 9e-12 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 8e-42 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 9e-11 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 5e-40 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 5e-10 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 2e-37 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 1e-19 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 6e-37 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 2e-17 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 3e-34 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 1e-18 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 3e-31 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 4e-16 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 1e-30 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 3e-12 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 4e-29 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 1e-06 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 5e-29 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 8e-26 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 7e-07 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 4e-06 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 1e-28 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 7e-08 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 1e-28 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 4e-15 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 4e-28 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 3e-09 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 5e-28 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 4e-10 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 1e-27 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 2e-26 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 6e-05 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 9e-04 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 1e-27 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 7e-24 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 2e-04 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 2e-04 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 2e-27 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 7e-09 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 4e-27 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 2e-26 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 1e-05 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 2e-26 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 6e-12 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 3e-26 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 5e-09 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 8e-26 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 6e-12 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 8e-26 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 4e-08 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 1e-25 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 9e-07 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 6e-25 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 4e-11 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 7e-21 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 1e-12 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 2e-16 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 4e-11 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 7e-16 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 1e-07 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 3e-14 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 5e-10 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 4e-05 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 3e-04 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 4e-14 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 2e-09 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 4e-14 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 7e-06 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 5e-14 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 2e-09 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 1e-13 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 2e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-13 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-04 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 2e-10 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 9e-08 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 3e-09 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 6e-09 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 7e-09 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 1e-07 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 7e-06 | |
| 1qzv_F | 154 | Plant photosystem I: subunit PSAF; photosynthesis, | 7e-04 |
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 1439 bits (3726), Expect = 0.0
Identities = 387/1151 (33%), Positives = 640/1151 (55%), Gaps = 22/1151 (1%)
Query: 2 SGEKKARGSSEVTKTKNGSFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFM 61
S K + K S ++F +A +D M++G + AI G + PL++ +
Sbjct: 16 SKMGKKSKKEKKEKKPAVSVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMT 75
Query: 62 NNIGGVSNV--------------PIDVFTHNINKNTVHLLYLALGSWVACFLEGYCWTRT 107
++ V NV + + + G + +++ W
Sbjct: 76 DSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLA 135
Query: 108 GERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNA 167
RQ ++R ++ A++ Q++G+FD+H E+ T +++D I + I +K+ F
Sbjct: 136 AGRQIHKIRQKFFHAIMNQEIGWFDVH--DVGELNTRLTDDVSKINEGIGDKIGMFFQAM 193
Query: 168 SLFFGCYLVAFLMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQA 227
+ FFG +++ F W+L +V +L + ++ + L S K Y KAG +AE+
Sbjct: 194 ATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEV 253
Query: 228 ISSIRTVYAFVGESKTINEFSSALQGSVQLGLKQGLAKGLAIGS-NGVTFGIWSFLCYYG 286
+++IRTV AF G+ K + +++ L+ + +LG+K+ + +++G+ + + ++ +YG
Sbjct: 254 LAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYG 313
Query: 287 SRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEMIKRVPKIDS 346
+ +V+ G V V S+ +G ++G PN++ F+ A A + ++I P IDS
Sbjct: 314 TSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDS 373
Query: 347 DSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVI 406
S G +N+ G +EFK + F+YPSR E I K L + +G+TVALVG SG GKST +
Sbjct: 374 FSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTV 433
Query: 407 ALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASM 466
L+QR Y PL G + +DG I + +++LR +G+VSQEP LFAT+I ENI +G+ED +M
Sbjct: 434 QLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTM 493
Query: 467 EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEA 526
+E+ +A K +NA++FI +LP Q+DT VGERG Q+SGGQKQRIAIARA+++ P+ILLLDEA
Sbjct: 494 DEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEA 553
Query: 527 TSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQ 586
TSALD+ESE VVQ ALDKA GRTTI+IAHRLST+RNADVIA G ++E G+HDEL+
Sbjct: 554 TSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELM- 612
Query: 587 AESGLYTSLVRLQTTTPDDNNNATMHSLASKSSNMDMNSTSSRRLSI--VSLSSSANSFA 644
E G+Y LV QT + + N+DM+S S I S S
Sbjct: 613 REKGIYFKLVMTQTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSICGPH 672
Query: 645 QGRGASQSNEEDIKKLPVPSFRRLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMI 704
+ E + +P SF R++ LN+ EW +G A + G +QP ++ ++
Sbjct: 673 DQDRKLSTKEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVV 732
Query: 705 SVYFLTDH-DEIKKKTSIYAFCFLGLAVFTLVINIIQHYNFAYMGEHLTKRIRERMLSKI 763
V+ + ++ +++++ FL L + + + +Q + F GE LTKR+R + +
Sbjct: 733 GVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSM 792
Query: 764 LTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWR 823
L +V WFD +N++GA+ +RLA DA V+ G R A++ Q I+ + + L W+
Sbjct: 793 LRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQ 852
Query: 824 LALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRI 883
L L+++A+ P++ I +L + K K S K+A EA+ N RT+ + + + +
Sbjct: 853 LTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKF 912
Query: 884 LKMLEKAQQGPRRESIRQSWYAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFE 943
M ++ Q P R +++++ GI +F+Q++ ++A F +G L+ ++ + +
Sbjct: 913 ETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLL 972
Query: 944 TFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRYTKIEPEDPEGHQPERITGNIE 1003
F +V + S D AK + + + ++++ +I+ +G +P + GN++
Sbjct: 973 VFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQ 1032
Query: 1004 LQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKI 1063
V F YP RP + + +G S++++ G++ ALVG SG GKST++ L+ERFYDP+ G V +
Sbjct: 1033 FSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFL 1092
Query: 1064 DDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGA-SDEIDESEIVEAAKAANAHD 1122
D ++I+ +++ LR + +VSQEP LF +I ENIAYG S + EIV AAK AN H
Sbjct: 1093 DGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQ 1152
Query: 1123 FIAGLNEGYDT 1133
FI L + Y+T
Sbjct: 1153 FIDSLPDKYNT 1163
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 677 bits (1748), Expect = 0.0
Identities = 219/601 (36%), Positives = 341/601 (56%), Gaps = 7/601 (1%)
Query: 15 KTKNGSFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDV 74
SF I + V+G AI +G P + SK + + P +
Sbjct: 687 DVPPASFWRILKLNST-EWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVF--TNGGPPET 743
Query: 75 FTHNINKNTVHLLYLALGSWVACFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLH 134
N N ++ L L + S++ FL+G+ + + GE R+R K++LRQDV +FD
Sbjct: 744 QRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDP 803
Query: 135 VTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLWRLAIVGFPFVVL 194
+T + T ++ND+ ++ A +L N + +++ + W+L ++ V +
Sbjct: 804 KNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPI 863
Query: 195 LVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGS 254
+ I G++ + L A K + E +G IA +AI + RTV + E K ++ +LQ
Sbjct: 864 IAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIP 923
Query: 255 VQLGLKQGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLA 313
+ +K+ G+ + + + ++ +G+ +V V V ++I G +A
Sbjct: 924 YRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMA 983
Query: 314 LGAGLPNLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSR 373
+G +++A + I+ +I++ P+IDS S +G + G V+F V F YP+R
Sbjct: 984 VGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTR 1043
Query: 374 PESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLK 433
P + + L + G+T+ALVG SG GKSTV+ LL+RFY P+ G + LDG I +L ++
Sbjct: 1044 PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQ 1103
Query: 434 WLRSQMGLVSQEPALFATSIKENILFGKED--ASMEEVIEAAKASNAHNFIRQLPQQYDT 491
WLR+Q+G+VSQEP LF SI ENI +G S EE++ AAK +N H FI LP +Y+T
Sbjct: 1104 WLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNT 1163
Query: 492 QVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTT 551
+VG++G Q+SGGQKQRIAIARA+++ P ILLLDEATSALD+ESE+VVQEALDKA GRT
Sbjct: 1164 RVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTC 1223
Query: 552 IIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQTTTPDDNNNATM 611
I+IAHRLSTI+NAD+I V+Q+G+V E G+H +L+ A+ G+Y S+V +Q +
Sbjct: 1224 IVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLL-AQKGIYFSMVSVQAGAKRSYVHHHH 1282
Query: 612 H 612
H
Sbjct: 1283 H 1283
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 487 bits (1256), Expect = e-165
Identities = 111/272 (40%), Positives = 158/272 (58%), Gaps = 5/272 (1%)
Query: 344 IDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKS 403
+ S N+ G V+F+ V FAYP+ P + + T+ GK ALVG +GSGKS
Sbjct: 1 MSPLS-GSLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKS 59
Query: 404 TVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGK-E 462
TV ALLQ Y P GG+++LDG + + +L +Q+ V QEP LF S +ENI +G
Sbjct: 60 TVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTR 119
Query: 463 DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILL 522
+MEE+ A S AH+FI PQ YDT+VGE G Q+SGGQ+Q +A+ARA+I+ PR+L+
Sbjct: 120 TPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLI 179
Query: 523 LDEATSALDSESERVVQEALDKA--VVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGS 580
LD ATSALD+ ++ VQ L ++ RT ++I +LS A I +++G V E G+
Sbjct: 180 LDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGT 239
Query: 581 HDELIQAESGLYTSLVRLQTTTPDDNNNATMH 612
H +L+ G Y S+V D + H
Sbjct: 240 HLQLM-ERGGCYRSMVEALAAPSDAAAHHHHH 270
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 263 bits (674), Expect = 2e-80
Identities = 60/149 (40%), Positives = 82/149 (55%), Gaps = 1/149 (0%)
Query: 985 IEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKS 1044
+ P P + G ++ Q+V FAYP P+V + +G + + GK TALVG +GSGKS
Sbjct: 1 MSPLSG-SLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKS 59
Query: 1045 TIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASD 1104
T+ L++ Y P G V +D + Y L +A V QEP LF + RENIAYG +
Sbjct: 60 TVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTR 119
Query: 1105 EIDESEIVEAAKAANAHDFIAGLNEGYDT 1133
EI A + AHDFI+G +GYDT
Sbjct: 120 TPTMEEITAVAMESGAHDFISGFPQGYDT 148
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 494 bits (1273), Expect = e-163
Identities = 175/570 (30%), Positives = 293/570 (51%), Gaps = 19/570 (3%)
Query: 34 FLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGS 93
+++ I I + S +L L +++ G ++ + + ++ L +
Sbjct: 25 AGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTD------RSVLLWMPLVVIGLMILR 78
Query: 94 WVACFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQ 153
+ ++ YC + + MR R ++ V +FD ST +++ ++ DS +
Sbjct: 79 GITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQ--STGTLLSRITYDSEQVA 136
Query: 154 DAISEKLPNFVMNASLFFGCYLVAFLMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKM 213
+ S L V + G +++ F W+L+I+ ++ I + + S+++ M
Sbjct: 137 SSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNM 196
Query: 214 RDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGLKQGLAKGLAIG-SN 272
++ + T AEQ + + V F G+ F G+K A ++
Sbjct: 197 QNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQ 256
Query: 273 GVTFGIWSFLCYYGSRMVMYHGAQGGTVFA-VGASIAVGGLALGAGLPNLKY-FSEAMAA 330
+ +F+ Y S + GT+ + IA+ L + L N+ F MAA
Sbjct: 257 LIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMR-PLKS-LTNVNAQFQRGMAA 314
Query: 331 GERIMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGK 390
+ + ++ + D ++ G++EF+ V F YP R + ++ L IPAGK
Sbjct: 315 CQTLFAILDSEQEKDEGKRV---IDRATGDLEFRNVTFTYPGREVPAL-RNINLKIPAGK 370
Query: 391 TVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFA 450
TVALVG SGSGKST+ +L+ RFY G I++DG + + L LR+Q+ LVSQ LF
Sbjct: 371 TVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFN 430
Query: 451 TSIKENILFGKEDA-SMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIA 509
++ NI + + + S E++ EAA+ + A +FI ++ DT +GE GV +SGGQ+QRIA
Sbjct: 431 DTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIA 490
Query: 510 IARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAV 569
IARA+++ IL+LDEATSALD+ESER +Q ALD+ RT+++IAHRLSTI AD I V
Sbjct: 491 IARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVV 550
Query: 570 VQDGQVMETGSHDELIQAESGLYTSLVRLQ 599
V+DG ++E G+H EL+ A+ G+Y L ++Q
Sbjct: 551 VEDGIIVERGTHSELL-AQHGVYAQLHKMQ 579
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 343 bits (883), Expect = e-106
Identities = 127/474 (26%), Positives = 221/474 (46%), Gaps = 17/474 (3%)
Query: 664 SFRRLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLT-DHDEIKKKTSIY 722
+FRRL AP + + L A + ++ F D +
Sbjct: 12 TFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLL----WM 67
Query: 723 AFCFLGLAVFTLVINIIQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAIC 782
+GL + + + I Y +++ + +R R+ ++ V +FD+ S+G +
Sbjct: 68 PLVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDK--QSTGTLL 125
Query: 783 SRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWRLALVMIAVQPLV--IICFY 840
SR+ D+ V S +V+ +++ F M + +W+L+++++ + P+V I
Sbjct: 126 SRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVV 185
Query: 841 ARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIR 900
++R +S+S + + A + + + + F Q K +K R + ++
Sbjct: 186 SKR--FRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMK 243
Query: 901 QSWYAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGS 960
+ I Q +AS A + +++ + F +++ R + +
Sbjct: 244 MVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTN 303
Query: 961 MTTDIAKGSDAVGSVFAVMDRYTKIEPEDPEGHQP-ERITGNIELQNVHFAYPARPDVMI 1019
+ +G A ++FA++D E E EG + +R TG++E +NV F YP R +V
Sbjct: 304 VNAQFQRGMAACQTLFAILD----SEQEKDEGKRVIDRATGDLEFRNVTFTYPGR-EVPA 358
Query: 1020 FEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRH 1079
++KI AGK+ ALVG+SGSGKSTI LI RFYD +G + +D D+R Y L SLR
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQ 418
Query: 1080 IALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133
+ALVSQ LF T+ NIAY ++E +I EAA+ A A DFI ++ G DT
Sbjct: 419 VALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDT 472
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 484 bits (1248), Expect = e-159
Identities = 166/571 (29%), Positives = 269/571 (47%), Gaps = 21/571 (3%)
Query: 34 FLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGS 93
+V+ I + + + ++ L ++ G + ++ + +L L
Sbjct: 25 AGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAE------SNFLRILPFMILGLMFVR 78
Query: 94 WVACFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQ 153
++ F YC + +MR R + V +FD ST +++ ++ DS +
Sbjct: 79 GLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQE--STGGLLSRITYDSEQVA 136
Query: 154 DAISEKLPNFVMNASLFFGCYLVAFLMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKM 213
A S L + V + G + F W+L++V ++ + ++R M
Sbjct: 137 GATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNM 196
Query: 214 RDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGLKQGLAKGLAIG-SN 272
+ + AEQ + + V ++ G+ F Q +K A+ +A
Sbjct: 197 QTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQ 256
Query: 273 GVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALG--AGLPNLKY-FSEAMA 329
+ + + S + GT V + + L ++ F MA
Sbjct: 257 MIASLALFAVLFLASVDSIRAELTPGTFTVV---FSAMFGLMRPLKALTSVTSEFQRGMA 313
Query: 330 AGERIMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAG 389
A + + ++ + D+ E E V GEV+ K V F Y + + + +IP G
Sbjct: 314 ACQTLFGLMDLETERDNGKYE---AERVNGEVDVKDVTFTYQGKEKPAL-SHVSFSIPQG 369
Query: 390 KTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALF 449
KTVALVG SGSGKST+ L RFY G I LDG + +L LR LVSQ LF
Sbjct: 370 KTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLF 429
Query: 450 ATSIKENILFGKE-DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRI 508
+I NI + E + + E++ +AA+ ++A FI +PQ DT +GE G +SGGQ+QR+
Sbjct: 430 NDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRV 489
Query: 509 AIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIA 568
AIARA+++ +L+LDEATSALD+ESER +Q ALD+ +T ++IAHRLSTI AD I
Sbjct: 490 AIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEIL 549
Query: 569 VVQDGQVMETGSHDELIQAESGLYTSLVRLQ 599
VV +G+++E G H +L+ A+ G Y L R+Q
Sbjct: 550 VVDEGEIIERGRHADLL-AQDGAYAQLHRIQ 579
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 336 bits (863), Expect = e-103
Identities = 118/475 (24%), Positives = 213/475 (44%), Gaps = 19/475 (4%)
Query: 664 SFRRLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYA 723
+F+RL + + + A + ++ F + +
Sbjct: 12 TFKRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGN-----AESNFLRI 66
Query: 724 FCFLGLAVFTL--VINIIQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAI 781
F+ L + + + Y +++ ++ ++R R+ + + V +FDQ S+G +
Sbjct: 67 LPFMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQ--ESTGGL 124
Query: 782 CSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWRLALVMIAVQPLV--IICF 839
SR+ D+ V +V+ +++ T+ + +W+L+LV+I V P+V I F
Sbjct: 125 LSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISF 184
Query: 840 YARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESI 899
++R + +S A + A + + + + ++ Q K +K R++++
Sbjct: 185 VSKR--FRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTM 242
Query: 900 RQSWYAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAG 959
+ I Q +AS + ++ F + R +
Sbjct: 243 KLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALT 302
Query: 960 SMTTDIAKGSDAVGSVFAVMDRYTKIEPEDPEG-HQPERITGNIELQNVHFAYPARPDVM 1018
S+T++ +G A ++F +MD +E E G ++ ER+ G +++++V F Y + +
Sbjct: 303 SVTSEFQRGMAACQTLFGLMD----LETERDNGKYEAERVNGEVDVKDVTFTYQGK-EKP 357
Query: 1019 IFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRR 1078
S I GK+ ALVG+SGSGKSTI L RFYD G + +D D+R Y L +LRR
Sbjct: 358 ALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRR 417
Query: 1079 HIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133
H ALVSQ LF TI NIAY A E +I +AA+ A+A +FI + +G DT
Sbjct: 418 HFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDT 472
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 475 bits (1226), Expect = e-156
Identities = 181/579 (31%), Positives = 278/579 (48%), Gaps = 29/579 (5%)
Query: 34 FLMVLGYIGAIGDGFSTPLVLFLTSKFMNN-IGGVSNVPIDVFTHNINKNTVHLLYLALG 92
+ + I I L+ L ++ I + + H + L +
Sbjct: 14 YRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIV 73
Query: 93 SWVACFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVI 152
F+ Y T + +R + + ++ + +VI+ V ND
Sbjct: 74 RPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANN--QVGQVISRVINDVEQT 131
Query: 153 QDAISEKLPNFVMNASLFFGCYLVAFLMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARK 212
+D I L N ++ + F + +L + ++ ++ L L R+
Sbjct: 132 KDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRE 191
Query: 213 MRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGLKQGLAKGLAIGSN 272
+ + + I V +F E F + LK N
Sbjct: 192 RSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK-------HTRWN 244
Query: 273 GVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKY--------- 323
+F + + G +V+ GA A+ SI VG LA G L +
Sbjct: 245 AYSFAAINTVTDIGPIIVIGVGA----YLAISGSITVGTLAAFVGYLELLFGPLRRLVAS 300
Query: 324 ---FSEAMAAGERIMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFK 380
+++ A+ +R+ ++I I + + + +E G ++ V F Y I+ K
Sbjct: 301 FTTLTQSFASMDRVFQLIDEDYDIK-NGVGAQPIEIKQGRIDIDHVSFQYNDNEAPIL-K 358
Query: 381 DFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440
D L+I G+TVA VG SG GKST+I L+ RFY G+I++DG +I LR+Q+G
Sbjct: 359 DINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIG 418
Query: 441 LVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQM 500
LV Q+ LF+ ++KENIL G+ A+ EEV+EAAK +NAH+FI LPQ YDT+VGERGV++
Sbjct: 419 LVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKL 478
Query: 501 SGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLST 560
SGGQKQR++IAR + P IL+LDEATSALD ESE ++QEALD RTT+I+AHRLST
Sbjct: 479 SGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLST 538
Query: 561 IRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQ 599
I +AD I V+++G ++ETG+H ELI A+ G Y L +Q
Sbjct: 539 ITHADKIVVIENGHIVETGTHRELI-AKQGAYEHLYSIQ 576
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 314 bits (806), Expect = 5e-95
Identities = 112/478 (23%), Positives = 201/478 (42%), Gaps = 19/478 (3%)
Query: 665 FRRLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYF----LTDHDEIKKKTS 720
+R + P + + + + + + I LT +++ T
Sbjct: 2 IKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTI 61
Query: 721 IYAFCFLGLAVFTLVINIIQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGA 780
+ I I+ Y + + IR+++ + + ++ N G
Sbjct: 62 AIGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYAN--NQVGQ 119
Query: 781 ICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWRLALVMIAVQPLVIICFY 840
+ SR+ D + + + + IA ++ F+ +L L + + P I+ Y
Sbjct: 120 VISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVY 179
Query: 841 ARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIR 900
L+ ++ + +A AE E V + + +F+ + K +K +++
Sbjct: 180 VFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK 239
Query: 901 QSWYAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVST-GRVIADAG 959
+ + A ++ + G L G I+ L F+ + +
Sbjct: 240 HTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLA-AFVGYLELLFGPLRRLV 298
Query: 960 SMTTDIAKGSDAVGSVFAVMDRYTKIEPEDPEGHQP-ERITGNIELQNVHFAYPARPDVM 1018
+ T + + ++ VF ++D + ++ G QP E G I++ +V F Y +
Sbjct: 299 ASFTTLTQSFASMDRVFQLID--EDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDN-EAP 355
Query: 1019 IFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRR 1078
I + ++ IE G++ A VG SG GKST+I LI RFYD G + ID +I+ + SLR
Sbjct: 356 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRN 415
Query: 1079 HIALVSQEPTLFAGTIRENIAYG---ASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133
I LV Q+ LF+ T++ENI G A+DE E+VEAAK ANAHDFI L +GYDT
Sbjct: 416 QIGLVQQDNILFSDTVKENILLGRPTATDE----EVVEAAKMANAHDFIMNLPQGYDT 469
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 451 bits (1163), Expect = e-151
Identities = 111/246 (45%), Positives = 161/246 (65%), Gaps = 1/246 (0%)
Query: 355 ENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYA 414
+ ++ F+ ++F Y +I + L+I G+ + +VG SGSGKST+ L+QRFY
Sbjct: 2 HHHHHDITFRNIRFRYKPDSP-VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI 60
Query: 415 PLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAK 474
P G++++DG + WLR Q+G+V Q+ L SI +NI S+E+VI AAK
Sbjct: 61 PENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAK 120
Query: 475 ASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSES 534
+ AH+FI +L + Y+T VGE+G +SGGQ+QRIAIARA++ P+IL+ DEATSALD ES
Sbjct: 121 LAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYES 180
Query: 535 ERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTS 594
E V+ + K GRT IIIAHRLST++NAD I V++ G+++E G H EL+ LY+
Sbjct: 181 EHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSY 240
Query: 595 LVRLQT 600
L +LQ+
Sbjct: 241 LYQLQS 246
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 220 bits (563), Expect = 2e-65
Identities = 53/141 (37%), Positives = 77/141 (54%), Gaps = 8/141 (5%)
Query: 996 ERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYD 1055
+I +N+ F Y V I + ++ I+ G+ +VG+SGSGKST+ LI+RFY
Sbjct: 2 HHHHHDITFRNIRFRYKPDSPV-ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI 60
Query: 1056 PLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYG---ASDEIDESEIV 1112
P G V ID D+ LRR + +V Q+ L +I +NI+ S E +++
Sbjct: 61 PENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVE----KVI 116
Query: 1113 EAAKAANAHDFIAGLNEGYDT 1133
AAK A AHDFI+ L EGY+T
Sbjct: 117 YAAKLAGAHDFISELREGYNT 137
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 423 bits (1089), Expect = e-140
Identities = 111/240 (46%), Positives = 161/240 (67%), Gaps = 4/240 (1%)
Query: 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI 420
+ + V FAY + I +D +A G SG GKST+ +LL+RFY P GEI
Sbjct: 2 LSARHVDFAYDDSEQ--ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 421 ILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKE-DASMEEVIEAAKASNAH 479
+DG ID + L+ RSQ+G VSQ+ A+ A +I+EN+ +G E D + E++ + + A
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 480 NFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQ 539
+F+ +P Q +T+VGERGV++SGGQ+QR+AIARA ++ P+IL+LDEAT++LDSESE +VQ
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 540 EALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQ 599
+ALD + GRTT++IAHRLSTI +AD I ++ GQ+ +G H+EL+ A LY V Q
Sbjct: 180 KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELV-ATHPLYAKYVSEQ 238
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 218 bits (559), Expect = 6e-65
Identities = 43/132 (32%), Positives = 67/132 (50%), Gaps = 2/132 (1%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
+ ++V FAY + S + + A G SG GKSTI L+ERFY P G++
Sbjct: 2 LSARHVDFAYDDSEQI--LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 1062 KIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAH 1121
ID + I + L + R I VSQ+ + AGTIREN+ YG + + ++ + A A
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 1122 DFIAGLNEGYDT 1133
F+ + + +T
Sbjct: 120 SFVENMPDQLNT 131
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 408 bits (1051), Expect = e-135
Identities = 110/261 (42%), Positives = 172/261 (65%), Gaps = 3/261 (1%)
Query: 344 IDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKS 403
++S S+ + +EF V F+YP + K IP+G T ALVG +GSGKS
Sbjct: 2 LESFSLTSH-EKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKS 60
Query: 404 TVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKED 463
T+ LL RFY G+I + G +++K +RS +G+V Q+ LF +IK NIL+GK D
Sbjct: 61 TIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLD 119
Query: 464 ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLL 523
A+ EEVI+A K++ ++FI LP+++DT VG +G+++SGG++QRIAIAR ++K P+I++
Sbjct: 120 ATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIF 179
Query: 524 DEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDE 583
DEATS+LDS++E + Q+A++ RT IIIAHRLSTI +A+ I ++ G+++E G+H +
Sbjct: 180 DEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKD 239
Query: 584 LIQAESGLYTSLVRLQTTTPD 604
L+ +G Y + +Q+ D
Sbjct: 240 LL-KLNGEYAEMWNMQSGGND 259
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 209 bits (535), Expect = 2e-61
Identities = 58/152 (38%), Positives = 90/152 (59%), Gaps = 9/152 (5%)
Query: 985 IEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKS 1044
+E H+ + NIE +V+F+YP + + + + I +G + ALVG +GSGKS
Sbjct: 2 LESFSLTSHEKK-FGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKS 60
Query: 1045 TIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYG--- 1101
TI L+ RFYD +GD+KI +++ Y+ S+R I +V Q+ LF TI+ NI YG
Sbjct: 61 TIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLD 119
Query: 1102 ASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133
A+DE E+++A K+A +DFI L + +DT
Sbjct: 120 ATDE----EVIKATKSAQLYDFIEALPKKWDT 147
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 392 bits (1010), Expect = e-124
Identities = 176/624 (28%), Positives = 300/624 (48%), Gaps = 59/624 (9%)
Query: 1 MSGEKKARGSSEVTKTKNGSFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKF 60
M ++ + K + + +LGY+ V S
Sbjct: 1 MPEIRRRPHGPILEKPALKNPTATLRR---------LLGYLRPHTFTLIMVFVFVTVSSI 51
Query: 61 MNNIG-GVSNVPIDVFTHNINKNTVH-----LLYLALGSWVACFLEGYCWTRTGERQATR 114
+ + + IDV + + L + + + +L+G + R
Sbjct: 52 LGVLSPYLIGKTIDVVFVPRRFDLLPRYMLILGTIYALTSLLFWLQGKIMLTLSQDVVFR 111
Query: 115 MRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCY 174
+R + + R VG+FD ++I+ V ND I + + + F G
Sbjct: 112 LRKELFEKLQRVPVGFFDRT--PHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAV 169
Query: 175 LVAFLMLWRLAIVGFPFVVLLVIPGLMYG-RTLMSLARKM-RDEYNKAGTI---AEQAIS 229
++ F + L++V L ++P + + + S RK + G + E+ IS
Sbjct: 170 IMMFRVNVILSLV-----TLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDIS 224
Query: 230 SIRTVYAFVGESKTINEFSSALQGSVQLGLKQGLAKGLAIGSNGVTFGIWSFLCYYGSRM 289
+ + F E K + +F + ++G K A +GV + + + G +
Sbjct: 225 GLTVIKLFTREEKEMEKFDRVNESLRKVGTK-------AQIFSGVLPPLMNMVNNLGFAL 277
Query: 290 VMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSE--------------AMAAGERIM 335
+ G A+ I VG +A + + F+ A+A+ ERI
Sbjct: 278 ISGFGG----WLALKDIITVGTIA--TFIGYSRQFTRPLNELSNQFNMIQMALASAERIF 331
Query: 336 EMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALV 395
E++ + D + L V GE+EFK V F+Y + + KD I G+ VALV
Sbjct: 332 EILDLEEEKDDP--DAVELREVRGEIEFKNVWFSY--DKKKPVLKDITFHIKPGQKVALV 387
Query: 396 GGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKE 455
G +GSGK+T++ LL RFY G+I++DG+ I K++ LRS +G+V Q+ LF+T++KE
Sbjct: 388 GPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKE 447
Query: 456 NILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAII 515
N+ +G A+ EE+ EAAK +++ +FI+ LP+ Y+T + + G +S GQ+Q +AI RA +
Sbjct: 448 NLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFL 507
Query: 516 KAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQV 575
P+IL+LDEATS +D+++E+ +Q A+ K + G+T+IIIAHRL+TI+NAD+I V++DG++
Sbjct: 508 ANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEI 567
Query: 576 METGSHDELIQAESGLYTSLVRLQ 599
+E G HDELI + G Y L Q
Sbjct: 568 VEMGKHDELI-QKRGFYYELFTSQ 590
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 261 bits (670), Expect = 7e-76
Identities = 122/505 (24%), Positives = 224/505 (44%), Gaps = 44/505 (8%)
Query: 646 GRGASQSNEEDIKKLPVPSFRRLVALNAPEWKQ---ATLGCVGATLFGAVQPIYAFAMGS 702
R E+ K P + RRL+ P + +++ G + P +G
Sbjct: 6 RRPHGPILEKPALKNPTATLRRLLGYLRPHTFTLIMVFVFVTVSSILGVLSPYL---IGK 62
Query: 703 MISVYFLT-DHDEIKKKTSIYAFCFLGLAVFTLVINIIQHYNFAYMGEHLTKRIRERMLS 761
I V F+ D + + I + ++ +Q + + + R+R+ +
Sbjct: 63 TIDVVFVPRRFDLLPRYMLILGTIYALTSLLFW----LQGKIMLTLSQDVVFRLRKELFE 118
Query: 762 KILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAV-TIAFT--MGL 818
K+ VG+FD+ G I SR+ D + + +++ ++Q S + T+A M
Sbjct: 119 KLQRVPVGFFDR--TPHGDIISRVINDVDNINNVL---GNSIIQFFSGIVTLAGAVIMMF 173
Query: 819 FIAWRLALVMIAVQPL--VIICFYARRVLLKSMSNKAIKAQAES-SKLAA---EAVSNLR 872
+ L+LV +++ PL +I + + + K +L E +S L
Sbjct: 174 RVNVILSLVTLSIVPLTVLITQIVSSQ------TRKYFYENQRVLGQLNGIIEEDISGLT 227
Query: 873 TITAFSSQHRILKMLEKAQQGPRRESIRQSWYAGIGLAFSQSLASCTWALDFWYGGRLIA 932
I F+ + + ++ ++ + R+ + ++G+ + + +AL +GG L
Sbjct: 228 VIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLAL 287
Query: 933 DGYISSKALFETFMILVST-GRVIADAGSMTTDIAKGSDAVGSVFAVMDRYTKIEPEDPE 991
I+ + TF+ R + + + I + +F ++D + E +DP+
Sbjct: 288 KDIITVGTIA-TFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILD--LEEEKDDPD 344
Query: 992 GHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIE 1051
+ + G IE +NV F+Y + + + I+ G+ ALVG +GSGK+TI+ L+
Sbjct: 345 AVELREVRGEIEFKNVWFSY--DKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLM 402
Query: 1052 RFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYG---ASDEIDE 1108
RFYD +G + +D DIR SLR I +V Q+ LF+ T++EN+ YG A+DE
Sbjct: 403 RFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDE--- 459
Query: 1109 SEIVEAAKAANAHDFIAGLNEGYDT 1133
EI EAAK ++ FI L EGY+T
Sbjct: 460 -EIKEAAKLTHSDHFIKHLPEGYET 483
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 377 bits (971), Expect = e-122
Identities = 119/284 (41%), Positives = 177/284 (62%), Gaps = 6/284 (2%)
Query: 327 AMAAGERIMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAY-PSRPESIIFKDFCLT 385
E + +++K ++ D L G +EF+ V F+Y R +D T
Sbjct: 21 MFIDMENMFDLLKEETEV-KDLPGAGPLRFQKGRIEFENVHFSYADGRE---TLQDVSFT 76
Query: 386 IPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQE 445
+ G+T+ALVG SG+GKST++ LL RFY G I +DG I ++ LRS +G+V Q+
Sbjct: 77 VMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQD 136
Query: 446 PALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQK 505
LF +I +NI +G+ A +EV AA+A+ H+ I P+ Y TQVGERG+++SGG+K
Sbjct: 137 TVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEK 196
Query: 506 QRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNAD 565
QR+AIAR I+KAP I+LLDEATSALD+ +ER +Q +L K RTTI++AHRLST+ NAD
Sbjct: 197 QRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNAD 256
Query: 566 VIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQTTTPDDNNNA 609
I V++DG ++E G H+ L+ + G+Y + +LQ + + +
Sbjct: 257 QILVIKDGCIVERGRHEALL-SRGGVYADMWQLQQGQEETSEDT 299
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 194 bits (496), Expect = 1e-55
Identities = 65/164 (39%), Positives = 89/164 (54%), Gaps = 14/164 (8%)
Query: 975 VFAVMDRYTKIEPEDPEGHQP-ERITGNIELQNVHFAY-PARPDVMIFEGFSIKIEAGKS 1032
+F ++ + E +D G P G IE +NVHF+Y R + S + G++
Sbjct: 28 MFDLLK--EETEVKDLPGAGPLRFQKGRIEFENVHFSYADGRE---TLQDVSFTVMPGQT 82
Query: 1033 TALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAG 1092
ALVG SG+GKSTI+ L+ RFYD G ++ID +DI SLR HI +V Q+ LF
Sbjct: 83 LALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFND 142
Query: 1093 TIRENIAYG---ASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133
TI +NI YG A ++ E+ AA+AA HD I EGY T
Sbjct: 143 TIADNIRYGRVTAGND----EVEAAAQAAGIHDAIMAFPEGYRT 182
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 330 bits (849), Expect = e-101
Identities = 141/539 (26%), Positives = 258/539 (47%), Gaps = 18/539 (3%)
Query: 76 THNINKNTVHLLYLALGSWVACFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHV 135
+ K + +L +AL V + + +R + V +++
Sbjct: 59 FSLVLKTGILMLIVALIGAVGGIGCTVFASYASQNFGADLRRDLFRKV--LSFSISNVNR 116
Query: 136 TSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLWRLAIVGFPFVVLL 195
T+ +IT ++ND +Q+ + L V LF G ++A + +L+ V + +
Sbjct: 117 FHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPI 176
Query: 196 VIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSV 255
V+ + + L RK+++ ++ + + + +R V AF E F A +
Sbjct: 177 VLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLR 236
Query: 256 QLGLKQGLAKGLA-----IGSNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVG--ASIA 308
+ + A N + ++G +V + + G++ A
Sbjct: 237 RSIISAFSLIVFALPLFIFIVNMGMIAV----LWFGGVLVRNNQMEIGSIMAYTNYLMQI 292
Query: 309 VGGLALGAGLPNLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQF 368
+ L + + N A A+ +R++E++ P I ++ L NV G V F+ V+F
Sbjct: 293 MFSLMMIGNILNF--IVRASASAKRVLEVLNEKPAI-EEADNALALPNVEGSVSFENVEF 349
Query: 369 AYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSID 428
Y + ++ ++ G VA++G +GSGKST++ L+ R P G + +D + +
Sbjct: 350 RYFENTDPVL-SGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVR 408
Query: 429 KLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQ 488
++LK LR + V QE LF+ +IKEN+ +G+EDA+ +E++EAAK + H+FI LP+
Sbjct: 409 TVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEG 468
Query: 489 YDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVG 548
YD++V G SGGQKQR++IARA++K P++L+LD+ TS++D +E+ + + L + G
Sbjct: 469 YDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKG 528
Query: 549 RTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQTTTPDDNN 607
TT II ++ T AD I V+ +G+V G+H EL+ Y + Q N+
Sbjct: 529 CTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELL-EHCKPYREIYESQFGNGVMND 586
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 202 bits (516), Expect = 2e-55
Identities = 120/481 (24%), Positives = 211/481 (43%), Gaps = 34/481 (7%)
Query: 666 RRLVALNAPEWKQATLGCV---GATLFGAVQPIYAFAMGSMISVYFLT-DHDEIKKKTSI 721
+ L P W A L + + QP + ++ D + K
Sbjct: 12 KTLARYLKPYWIFAVLAPLFMVVEVICDLSQPTL---LARIVDEGIARGDFSLVLK---- 64
Query: 722 YAFCFLGLAVFTLVINIIQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAI 781
L +A+ V I +Y ++ +R + K+L+F + ++ + ++
Sbjct: 65 TGILMLIVALIGAVGGIGCTVFASYASQNFGADLRRDLFRKVLSFSISNVNR--FHTSSL 122
Query: 782 CSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWRLALVMIAVQPLVIICFYA 841
+RL D +++LV ++V+ M + I +L+ V+I + P +++ F
Sbjct: 123 ITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLLFV- 181
Query: 842 RRVLLKSMSNKAIKAQAESSKL---AAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRES 898
L K + K Q + ++ E + +R + AF + + KA + RR
Sbjct: 182 --WLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSI 239
Query: 899 IRQSWYAGIGLAFSQSLASCTWALDFWYGGRLIADGYISS---KALFE-TFMILVSTGRV 954
I L + + W+GG L+ + + A I+ S
Sbjct: 240 ISAFSLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFS---- 295
Query: 955 IADAGSMTTDIAKGSDAVGSVFAVMDRYTKIEPEDPE-GHQPERITGNIELQNVHFAYP- 1012
+ G++ I + S + V V++ K E+ + + G++ +NV F Y
Sbjct: 296 LMMIGNILNFIVRASASAKRVLEVLN--EKPAIEEADNALALPNVEGSVSFENVEFRYFE 353
Query: 1013 ARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYH 1072
V+ G + ++ G A++G++GSGKST++ LI R DP +G V++D+ D+R+
Sbjct: 354 NTDPVL--SGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVK 411
Query: 1073 LRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYD 1132
L+ LR HI+ V QE LF+GTI+EN+ +G D D+ EIVEAAK A HDFI L EGYD
Sbjct: 412 LKDLRGHISAVPQETVLFSGTIKENLKWGREDATDD-EIVEAAKIAQIHDFIISLPEGYD 470
Query: 1133 T 1133
+
Sbjct: 471 S 471
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 206 bits (526), Expect = 1e-58
Identities = 73/332 (21%), Positives = 144/332 (43%), Gaps = 17/332 (5%)
Query: 359 GEVEFKCVQFAYPSRPES-IIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLG 417
G++ K + Y I ++ +I G+ V L+G +GSGKST+++ R
Sbjct: 18 GQMTVKDLTAKY--TEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT-E 74
Query: 418 GEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENI-LFGKEDASMEEVIEAAKAS 476
GEI +DGVS D + L+ R G++ Q+ +F+ + ++N+ S +E+ + A
Sbjct: 75 GEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAH--SDQEIWKVADEV 132
Query: 477 NAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESER 536
+ I Q P + D + + G +S G KQ + +AR+++ +ILLLDE ++ LD + +
Sbjct: 133 GLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQ 192
Query: 537 VVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLV 596
+++ L +A T I+ R+ + D V+++ +V + S EL + + +
Sbjct: 193 IIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVAGF 252
Query: 597 R----------LQTTTPDDNNNATMHSLASKSSNMDMNSTSSRRLSIVSLSSSANSFAQG 646
T T D + + + + S + + +SL
Sbjct: 253 IGSPKMNFLPVKVTATAIDQVQVELPMPNRQQVWLPVESRDVQVGANMSLGIRPEHLLPS 312
Query: 647 RGASQSNEEDIKKLPVPSFRRLVALNAPEWKQ 678
A E +++ + + + P +Q
Sbjct: 313 DIADVILEGEVQVVEQLGNETQIHIQIPSIRQ 344
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 7e-23
Identities = 36/152 (23%), Positives = 64/152 (42%), Gaps = 10/152 (6%)
Query: 985 IEPED--PEGHQPERITGNIELQNVHFAYPARPD-VMIFEGFSIKIEAGKSTALVGQSGS 1041
IE + P G + ++++ Y I E S I G+ L+G++GS
Sbjct: 3 IENSHVKKDDIWPSG--GQMTVKDLTAKY--TEGGNAILENISFSISPGQRVGLLGRTGS 58
Query: 1042 GKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYG 1101
GKST++ R + +G+++ID S L R+ ++ Q+ +F+GT R+N+
Sbjct: 59 GKSTLLSAFLRLLNT-EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLD-- 115
Query: 1102 ASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133
+ + EI + A I D
Sbjct: 116 PNAAHSDQEIWKVADEVGLRSVIEQFPGKLDF 147
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 157 bits (399), Expect = 1e-43
Identities = 61/241 (25%), Positives = 114/241 (47%), Gaps = 20/241 (8%)
Query: 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGG 418
EV + V + ++ KD I G+ +A+ G +G+GK++++ ++ P G
Sbjct: 5 TEVVMENVTAFWEEGGTPVL-KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG 63
Query: 419 EIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKE-DASM-EEVIEAAKAS 476
+I G ++ SQ + +IKENI+FG D VI KA
Sbjct: 64 KIKHSG-------------RISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVI---KAC 107
Query: 477 NAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESER 536
I + ++ + +GE G+ +SGGQ+ RI++ARA+ K + LLD LD +E+
Sbjct: 108 QLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEK 167
Query: 537 -VVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSL 595
+ + + K + +T I++ ++ ++ AD I ++ +G G+ EL + + L
Sbjct: 168 EIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKL 227
Query: 596 V 596
+
Sbjct: 228 M 228
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 65.3 bits (160), Expect = 9e-12
Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 16/104 (15%)
Query: 999 TGNIELQNVHFAY-PARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPL 1057
T + ++NV + V+ + + KIE G+ A+ G +G+GK++++ +I +P
Sbjct: 4 TTEVVMENVTAFWEEGGTPVL--KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS 61
Query: 1058 KGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYG 1101
+G +K R I+ SQ + GTI+ENI +G
Sbjct: 62 EGKIKHSGR-------------ISFCSQFSWIMPGTIKENIIFG 92
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 152 bits (386), Expect = 8e-42
Identities = 67/255 (26%), Positives = 123/255 (48%), Gaps = 23/255 (9%)
Query: 358 LGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLG 417
+ + + F + +R + +IP G VA+VG G GKS++++ L +
Sbjct: 1 MNSITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVE 59
Query: 418 GEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKE-DASM-EEVIEAAKA 475
G + + G + V Q+ + S++ENILFG + + VI+A
Sbjct: 60 GHVAIKG-------------SVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQAC-- 104
Query: 476 SNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSE-S 534
+ + LP T++GE+GV +SGGQKQR+++ARA+ I L D+ SA+D+
Sbjct: 105 ALLPDL-EILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVG 163
Query: 535 ERVVQEAL--DKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLY 592
+ + + + + +T I++ H +S + DVI V+ G++ E GS+ EL+ G +
Sbjct: 164 KHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR-DGAF 222
Query: 593 TSLVRLQTTTPDDNN 607
+R + ++
Sbjct: 223 AEFLRTYASHHHHHH 237
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 9e-11
Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 14/102 (13%)
Query: 1000 GNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKG 1059
+I ++N F + + G + I G A+VGQ G GKS+++ + D ++G
Sbjct: 2 NSITVRNATFTWARSDPPTL-NGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEG 60
Query: 1060 DVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYG 1101
V I +A V Q+ + ++RENI +G
Sbjct: 61 HVAIKGS-------------VAYVPQQAWIQNDSLRENILFG 89
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 149 bits (377), Expect = 5e-40
Identities = 59/265 (22%), Positives = 118/265 (44%), Gaps = 19/265 (7%)
Query: 366 VQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGV 425
+ F+ S + + KD I G+ +A+ G +G+GK++++ ++ P G+I G
Sbjct: 41 LSFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG- 99
Query: 426 SIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASM-EEVIEAAKASNAHNFIRQ 484
++ SQ + +IKENI+ D VI+A + I +
Sbjct: 100 ------------RISFCSQNSWIMPGTIKENIIGVSYDEYRYRSVIKACQLEED---ISK 144
Query: 485 LPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVV-QEALD 543
++ + +GE G+ +SGGQ+ RI++ARA+ K + LLD LD +E+ + + +
Sbjct: 145 FAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVC 204
Query: 544 KAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQTTTP 603
K + +T I++ ++ ++ AD I ++ +G G+ EL Q ++S + +
Sbjct: 205 KLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL-QNLRPDFSSKLMGCDSFD 263
Query: 604 DDNNNATMHSLASKSSNMDMNSTSS 628
+ L + +
Sbjct: 264 QFSAERRNSILTETLHRFSLEGDAP 288
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 5e-10
Identities = 24/122 (19%), Positives = 53/122 (43%), Gaps = 21/122 (17%)
Query: 980 DRYTKIEPEDPEGHQPERIT---GNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALV 1036
+ + ++ + + + + + ++ N + + + KIE G+ A+
Sbjct: 16 EGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTP-----VLKDINFKIERGQLLAVA 70
Query: 1037 GQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRE 1096
G +G+GK++++ +I +P +G +K R I+ SQ + GTI+E
Sbjct: 71 GSTGAGKTSLLMMIMGELEPSEGKIKHSGR-------------ISFCSQNSWIMPGTIKE 117
Query: 1097 NI 1098
NI
Sbjct: 118 NI 119
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 140 bits (356), Expect = 2e-37
Identities = 65/250 (26%), Positives = 116/250 (46%), Gaps = 33/250 (13%)
Query: 348 SMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIA 407
S+E IL+ + + + Y ++ K + I G+ A++GG+G GKST+
Sbjct: 2 SLEDYILK-------VEELNYNYSDGTHAL--KGINMNIKRGEVTAILGGNGVGKSTLFQ 52
Query: 408 LLQRFYAPLGGEIILDGVSI--DKLQLKWLRSQMGLVSQEPA--LFATSIKENILFG--- 460
P G I+ D I + + LR +G+V Q+P LF+ S+ +++ FG
Sbjct: 53 NFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVN 112
Query: 461 ---KEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKA 517
ED + V A K + + + +S GQK+R+AIA ++
Sbjct: 113 MKLPEDEIRKRVDNALKRTGIEHLKDKPTHC-----------LSFGQKKRVAIAGVLVME 161
Query: 518 PRILLLDEATSALDSESERVVQEALDK--AVVGRTTIIIAHRLSTI-RNADVIAVVQDGQ 574
P++L+LDE T+ LD + + L + +G T II H + + D + V+++G+
Sbjct: 162 PKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGR 221
Query: 575 VMETGSHDEL 584
V+ G+ E+
Sbjct: 222 VILQGNPKEV 231
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 89.5 bits (223), Expect = 1e-19
Identities = 30/122 (24%), Positives = 64/122 (52%), Gaps = 7/122 (5%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
++++ +++ Y +G ++ I+ G+ TA++G +G GKST+ P G +
Sbjct: 8 LKVEELNYNYS--DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRI 65
Query: 1062 KIDDRDI--RSYHLRSLRRHIALVSQEPT--LFAGTIRENIAYGASD-EIDESEIVEAAK 1116
D++ I + LR I +V Q+P LF+ ++ +++++GA + ++ E EI +
Sbjct: 66 LFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVD 125
Query: 1117 AA 1118
A
Sbjct: 126 NA 127
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 139 bits (352), Expect = 6e-37
Identities = 43/236 (18%), Positives = 97/236 (41%), Gaps = 28/236 (11%)
Query: 361 VEFKCVQFAYPSRP-ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGE 419
++ K V + E ++ L + G+ V ++G +GSGK+T++ + P G
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGN 59
Query: 420 IILDGVSIDKLQLKWLRSQMGLVSQEPALFA--TSIKENILFGKE--DASMEEVIEAAKA 475
I ++G+ + K+ R+ + + P + ++ + + +E + +E K
Sbjct: 60 IFINGMEVRKI-----RNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLK- 113
Query: 476 SNAHNFIRQLPQQYDTQVGERGV-QMSGGQKQRIAIARAIIKAPRILLLDEATSALDSES 534
+L ++ R + ++S GQ + + A+ P I+ LDE +D+
Sbjct: 114 ------ALKLGEEI----LRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAAR 163
Query: 535 ERVVQEALDKAVVGRTTIIIAHRLST-IRNADVIAVV-QDGQVMETGSHDELIQAE 588
V+ + + G+ I++ H L + A ++ S EL+++
Sbjct: 164 RHVISRYIKE--YGKEGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLESS 217
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 82.4 bits (204), Expect = 2e-17
Identities = 26/134 (19%), Positives = 55/134 (41%), Gaps = 18/134 (13%)
Query: 1002 IELQNVHFAYPARP-DVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGD 1060
I+L+NV + + E ++++ G+ ++G +GSGK+T++ I P G+
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGN 59
Query: 1061 VKIDDRDIRSYHLRSLRRHIALVSQEPTLFAG--TIRENIAYGAS-DEIDESEIVEAAKA 1117
+ I+ ++ R +R +I + P + T+ + + +D +E K
Sbjct: 60 IFINGMEV-----RKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLK- 113
Query: 1118 ANAHDFIAGLNEGY 1131
L E
Sbjct: 114 ------ALKLGEEI 121
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 3e-34
Identities = 57/237 (24%), Positives = 113/237 (47%), Gaps = 27/237 (11%)
Query: 361 VEFKCVQFAYPSRP--ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGG 418
+E V + E ++ L I G+ + + G +GSGKST++ ++ P G
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 419 EIILDGVSIDKLQLKWLRSQMGLVSQEPA--LFATSIKENILFGKEDASM-EEVIEAAKA 475
+++ DG ++ + +R +G+ Q P FA + + + F ++ + + K
Sbjct: 63 DVLYDG---ERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKK 119
Query: 476 S------NAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSA 529
+ + +F ++P +SGG+K+R+AIA I+ P IL+LDE
Sbjct: 120 AMEFVGLDFDSFKDRVPFF-----------LSGGEKRRVAIASVIVHEPDILILDEPLVG 168
Query: 530 LDSESERVVQEALDK-AVVGRTTIIIAHRLSTI-RNADVIAVVQDGQVMETGSHDEL 584
LD E + + ++K +G+T I+I+H + T+ + D + V++ G+ + G+ E
Sbjct: 169 LDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEF 225
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 86.1 bits (214), Expect = 1e-18
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 7/121 (5%)
Query: 1002 IELQNVHFAYPARP--DVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKG 1059
IE+ NV + + E S+ I G+ + G +GSGKST++ ++ +P G
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 1060 DVKIDDRDIRSYHLRSLRRHIALVSQEPT--LFAGTIRENIAYGASDEIDESEIVEAAKA 1117
DV D +RR+I + Q P FA + + +A+ + + + V K
Sbjct: 63 DVLYDGERK---KGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKK 119
Query: 1118 A 1118
A
Sbjct: 120 A 120
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 3e-31
Identities = 51/247 (20%), Positives = 108/247 (43%), Gaps = 23/247 (9%)
Query: 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI 420
++ + + I K I G L G +G+GK+T++ +L + G +
Sbjct: 22 IQLDQIGRMKQGKT---ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTV 78
Query: 421 ILDGVSIDKL--QLKWLRSQMGLVSQEPAL---FATSIKENILFGKEDAS--MEEVIEAA 473
L G K+ + +R +G VS + + ++ G + +++ +
Sbjct: 79 NLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEI 138
Query: 474 KASNAHNFIRQL--PQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALD 531
+ AH ++ + + +G +S G+KQR+ IARA++ P++L+LDE + LD
Sbjct: 139 RNE-AHQLLKLVGMSAKAQQYIG----YLSTGEKQRVMIARALMGQPQVLILDEPAAGLD 193
Query: 532 SESERVVQEALD---KAVVGRTTIIIAHRLSTIRNA-DVIAVVQDGQVMETGSHDELIQA 587
+ + LD + I + H + I I +++DGQ ++ G+ ++++ +
Sbjct: 194 FIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILTS 253
Query: 588 E--SGLY 592
E S +
Sbjct: 254 ENMSRFF 260
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 78.8 bits (195), Expect = 4e-16
Identities = 23/110 (20%), Positives = 44/110 (40%), Gaps = 8/110 (7%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
I+L + + I + S +I G L G +G+GK+T++ ++ + G V
Sbjct: 22 IQLDQIGRMKQGKT---ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTV 78
Query: 1062 KIDDRDIRS--YHLRSLRRHIALVSQEPTL---FAGTIRENIAYGASDEI 1106
+ + Y ++R+HI VS + + + GA I
Sbjct: 79 NLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSI 128
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 1e-30
Identities = 61/238 (25%), Positives = 113/238 (47%), Gaps = 33/238 (13%)
Query: 361 VEFKCVQFAYPSRPESII-FKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGE 419
++ + + +I + L +PAG+ ++G SG+GKST+I + P G
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 420 IILDGVSIDKL---QLKWLRSQMGLVSQEPALFAT-SIKENILFGKEDASMEEVIEAAKA 475
+++DG + L +L R Q+G++ Q L ++ ++ N+ E + + +
Sbjct: 85 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 144
Query: 476 SN----------AHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDE 525
+ ++ L SGGQKQR+AIARA+ P++LL D+
Sbjct: 145 TELLSLVGLGDKHDSYPSNL---------------SGGQKQRVAIARALASNPKVLLCDQ 189
Query: 526 ATSALDSESERVVQEALDK--AVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGS 580
ATSALD + R + E L +G T ++I H + ++ D +AV+ +G+++E +
Sbjct: 190 ATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDT 247
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 3e-12
Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 5/120 (4%)
Query: 986 EPEDPEGHQPERITGNIELQNVHFAYPAR-PDVMIFEGFSIKIEAGKSTALVGQSGSGKS 1044
GH + I+L N+ + + S+ + AG+ ++G SG+GKS
Sbjct: 9 HHHHSSGHIDDDDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKS 68
Query: 1045 TIIGLIERFYDPLKGDVKIDDRDIRSY---HLRSLRRHIALVSQEPTLFAG-TIRENIAY 1100
T+I + P +G V +D +++ + L RR I ++ Q L + T+ N+A
Sbjct: 69 TLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVAL 128
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 4e-29
Identities = 72/234 (30%), Positives = 116/234 (49%), Gaps = 39/234 (16%)
Query: 380 KDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSI------------ 427
K L AG ++++G SGSGKST + + P G II++G +I
Sbjct: 23 KGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 82
Query: 428 -DKLQLKWLRSQMGLVSQEPALFA-TSIKENILFGKEDASMEEVIEAAKASNAHNFIRQL 485
DK QL+ LR+++ +V Q L++ ++ EN+ ME I+ S R+
Sbjct: 83 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENV--------MEAPIQVLGLSKHD--ARER 132
Query: 486 PQQYDTQVG--ERG-----VQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVV 538
+Y +VG ER V +SGGQ+QR++IARA+ P +LL DE TSALD E +V
Sbjct: 133 ALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPE---LV 189
Query: 539 QEAL----DKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQA 587
E L A G+T +++ H + R+ + + + G++ E G +++
Sbjct: 190 GEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGN 243
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 1e-06
Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 17/111 (15%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
+ + ++H Y + +G S++ AG +++G SGSGKST + I P +G +
Sbjct: 7 LHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 63
Query: 1062 KIDDRDIRSY-------------HLRSLRRHIALVSQEPTLFAG-TIRENI 1098
++ ++I LR LR + +V Q L++ T+ EN+
Sbjct: 64 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENV 114
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 5e-29
Identities = 47/245 (19%), Positives = 84/245 (34%), Gaps = 30/245 (12%)
Query: 338 IKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGG 397
+ + E L+N F + + + ++G
Sbjct: 329 FRTEALQFRIADATEDLQNDSASRAFSYPSLKK--TQGDFVLNVEEGEFSDSEILVMMGE 386
Query: 398 SGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEP--ALFATSIKE 455
+G+GK+T+I LL P G+ I KL + ++ LF I+
Sbjct: 387 NGTGKTTLIKLLAGALKPDEGQDIP------KLNVSMKPQKIAPKFPGTVRQLFFKKIRG 440
Query: 456 NILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAII 515
L + + + K + I Q Q +SGG+ QR+AI A+
Sbjct: 441 QFL------NPQFQTDVVKPLRIDDIIDQEVQH-----------LSGGELQRVAIVLALG 483
Query: 516 KAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQD 572
I L+DE ++ LDSE + + + + + +T I+ H AD + V +
Sbjct: 484 IPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEG 543
Query: 573 GQVME 577
Sbjct: 544 IPSKN 548
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 8e-26
Identities = 47/241 (19%), Positives = 88/241 (36%), Gaps = 35/241 (14%)
Query: 358 LGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALL-------- 409
L V Y + + T G+ + LVG +G GKST + +L
Sbjct: 75 LPTNLEAHVTHRYSANSFKL---HRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNL 131
Query: 410 QRFYAPLGGEIILDGVSIDKLQ---LKWLRSQMGLVSQEP--ALFATSIKENILFGKE-- 462
RF P + I+ +LQ K L + + + +IK + E
Sbjct: 132 GRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELL 191
Query: 463 ----DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAP 518
+ S E+V K N +++ ++ +SGG+ QR AI + ++
Sbjct: 192 KLRMEKSPEDVKRYIKILQLENVLKRDIEK-----------LSGGELQRFAIGMSCVQEA 240
Query: 519 RILLLDEATSALDSESERVVQEALDKAVVGRTTIIIA-HRLSTIRN-ADVIAVVQDGQVM 576
+ + DE +S LD + + + + +I H LS + +D + ++ +
Sbjct: 241 DVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSV 300
Query: 577 E 577
Sbjct: 301 Y 301
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 7e-07
Identities = 16/100 (16%), Positives = 35/100 (35%), Gaps = 12/100 (12%)
Query: 1014 RPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHL 1073
+ + + ++G++G+GK+T+I L+ P +G I ++ S
Sbjct: 362 TQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD-IPKLNV-SM-- 417
Query: 1074 RSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVE 1113
+ IA GT+R+ + +
Sbjct: 418 --KPQKIAPKFP------GTVRQLFFKKIRGQFLNPQFQT 449
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 4e-06
Identities = 24/133 (18%), Positives = 41/133 (30%), Gaps = 21/133 (15%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKST----IIGLIE----RF 1053
+V Y A G+ LVG +G GKST + G + RF
Sbjct: 78 NLEAHVTHRYSANSFK---LHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF 134
Query: 1054 YDPLKGDVKIDD---RDIRSYHLRSLRRHIALVSQEPT--LFAGTIRENIA-----YGAS 1103
DP + I ++++Y + L I + + I+ +
Sbjct: 135 DDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLR 194
Query: 1104 DEIDESEIVEAAK 1116
E ++ K
Sbjct: 195 MEKSPEDVKRYIK 207
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 1e-28
Identities = 68/224 (30%), Positives = 103/224 (45%), Gaps = 35/224 (15%)
Query: 380 KDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSI--DKLQLKWLRS 437
K + I G+ V ++G SGSGKST + L GEII+DG+++ L +R
Sbjct: 41 KGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE 100
Query: 438 QMGLVSQEPALFA-TSIKENILFG--------KEDASMEEVIEAAKASNAHNFIRQ--LP 486
++G+V Q LF ++ NI +E A E A + + L
Sbjct: 101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKA--EAK--------AMELLDKVGLK 150
Query: 487 QQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDK-- 544
+ +SGGQ QR+AIARA+ P+I+L DE TSALD E +V E L
Sbjct: 151 DKAHAYPD----SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPE---MVGEVLSVMK 203
Query: 545 --AVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELI 585
A G T +++ H + R D + + G ++E G ++L
Sbjct: 204 QLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLF 247
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 7e-08
Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 8/121 (6%)
Query: 986 EPEDPEGHQPERITGN--IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGK 1043
G P I++ + ++ + + +G ++ I G+ ++G SGSGK
Sbjct: 7 HHHHSSGLVPRGSHMLQMIDVHQLKKSFG---SLEVLKGINVHIREGEVVVVIGPSGSGK 63
Query: 1044 STIIGLIERFYDPLKGDVKIDDRDI--RSYHLRSLRRHIALVSQEPTLFAG-TIRENIAY 1100
ST + + D +G++ ID ++ + +L +R + +V Q LF T+ NI
Sbjct: 64 STFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITL 123
Query: 1101 G 1101
Sbjct: 124 A 124
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 114 bits (289), Expect = 1e-28
Identities = 47/225 (20%), Positives = 97/225 (43%), Gaps = 29/225 (12%)
Query: 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRS 437
+ AG+ + LVG +G+GKST++A + G I G ++ L
Sbjct: 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGKGSIQFAGQPLEAWSATKLAL 73
Query: 438 QMGLVSQEPAL-FATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVG-- 494
+SQ+ FAT + + + D + E++ + +
Sbjct: 74 HRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGA--------------LALDDK 119
Query: 495 -ERGV-QMSGGQKQRIAIARAI-------IKAPRILLLDEATSALD-SESERVVQEALDK 544
R Q+SGG+ QR+ +A + A ++LLLDE ++LD ++ + +
Sbjct: 120 LGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL 179
Query: 545 AVVGRTTIIIAHRLS-TIRNADVIAVVQDGQVMETGSHDELIQAE 588
+ G ++ +H L+ T+R+A +++ G+++ +G +E++
Sbjct: 180 SQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPP 224
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 4e-15
Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 2/106 (1%)
Query: 1019 IFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRR 1078
S ++ AG+ LVG +G+GKST++ + KG ++ + + ++ L
Sbjct: 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLAL 73
Query: 1079 HIALVSQEPTL-FAGTIRENIAYGASDEIDESEIVEAAKAANAHDF 1123
H A +SQ+ T FA + + D+ + + A A D
Sbjct: 74 HRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDK 119
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 4e-28
Identities = 66/220 (30%), Positives = 109/220 (49%), Gaps = 30/220 (13%)
Query: 379 FKDFCLTI---PAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWL 435
+F L + L+G +G+GKS + L+ P GE+ L+G I L +
Sbjct: 11 LGNFRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE-- 68
Query: 436 RSQMGLVSQEPALFA-TSIKENILFGKEDASMEE----VIEAAKASNAHNFIRQLPQQYD 490
R +G V Q+ ALF S+ NI +G + E V E A+ + + + P +
Sbjct: 69 RRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPAR-- 126
Query: 491 TQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV---V 547
+SGG++QR+A+ARA++ PR+LLLDE SA+D +++ V+ E L + V
Sbjct: 127 ---------LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEEL-RFVQREF 176
Query: 548 GRTTIIIAHRLS---TIRNADVIAVVQDGQVMETGSHDEL 584
+ + H L + AD +AV+ +G+++E G EL
Sbjct: 177 DVPILHVTHDLIEAAML--ADEVAVMLNGRIVEKGKLKEL 214
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 57.9 bits (141), Expect = 3e-09
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 8/91 (8%)
Query: 1024 SIKIEAGKS-TALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIAL 1082
++ E G+ L+G +G+GKS + LI P +G+V+++ DI L RR I
Sbjct: 17 NVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT--PLPPERRGIGF 74
Query: 1083 VSQEPTLFAG-TIRENIAYG----ASDEIDE 1108
V Q+ LF ++ NIAYG E D
Sbjct: 75 VPQDYALFPHLSVYRNIAYGLRNVERVERDR 105
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 5e-28
Identities = 66/220 (30%), Positives = 104/220 (47%), Gaps = 38/220 (17%)
Query: 380 KDFCLTIPAGKTVALVGGSGSGKST---VIALLQRFYAPLGGEIILDGVSIDKL---QLK 433
K+ L I G+ V+++G SGSGKST +I L + P GE+ +D + + L +L
Sbjct: 22 KNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK---PTEGEVYIDNIKTNDLDDDELT 78
Query: 434 WLRSQM-GLVSQEPALFA-TSIKEN-----ILFGKEDASMEEVIEAAKASNAHNFIRQLP 486
+R G V Q+ L + EN I + S EE + A
Sbjct: 79 KIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRAL------------ 126
Query: 487 QQYDTQVG--ERGV-----QMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQ 539
+ ER Q+SGGQ+QR+AIARA+ P I+L D+ T ALDS++ +
Sbjct: 127 -ECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIM 185
Query: 540 EALDK--AVVGRTTIIIAHRLSTIRNADVIAVVQDGQVME 577
+ L K G+T +++ H ++ R + I ++DG+V
Sbjct: 186 QLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVER 225
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 60.2 bits (147), Expect = 4e-10
Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 26/135 (19%)
Query: 1002 IELQNVHFAYPA-RPDVMIFEGFSIKIEAGKSTALVGQSGSGKST---IIGLIERFYDPL 1057
++L+NV Y + + ++ I+ G+ +++G SGSGKST IIG +++ P
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK---PT 58
Query: 1058 KGDVKIDDRDIRSY------HLRSLRRHIALVSQE----PTLFAGTIRENIA----YGAS 1103
+G+V ID+ +R R I V Q+ P L T EN+ +
Sbjct: 59 EGEVYIDNIKTNDLDDDELTKIR--RDKIGFVFQQFNLIPLL---TALENVELPLIFKYR 113
Query: 1104 DEIDESEIVEAAKAA 1118
+ E + A
Sbjct: 114 GAMSGEERRKRALEC 128
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 1e-27
Identities = 44/199 (22%), Positives = 75/199 (37%), Gaps = 23/199 (11%)
Query: 384 LTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVS 443
G+ + ++G +G GK+T +L G + + + + + G V
Sbjct: 289 GEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQ 348
Query: 444 QEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGG 503
Q + K+ + S E K N H + +SGG
Sbjct: 349 Q---YLENASKDAL-----STSSWFFEEVTKRLNLHRLLESNVND-----------LSGG 389
Query: 504 QKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTI 561
+ Q++ IA + K + +LD+ +S LD E +V +A+ + T II H LS
Sbjct: 390 ELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIH 449
Query: 562 RN-ADVIAVVQDGQVMETG 579
AD I V G+ + G
Sbjct: 450 DYIADRIIVF-KGEPEKAG 467
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 113 bits (286), Expect = 2e-26
Identities = 39/212 (18%), Positives = 82/212 (38%), Gaps = 21/212 (9%)
Query: 379 FKDFCLTIP-AGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLR- 436
FK F L P + ++G +G GK+TV+ +L P G+ + LK R
Sbjct: 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDE--VLKRFRG 71
Query: 437 SQMGLVSQEPA---------LFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQ 487
++ +E + L G + + ++ E K L
Sbjct: 72 KEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEV---KELLNM 128
Query: 488 QYDTQVGERGV-QMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV 546
+ + +SGG QR+ +A ++++ + + D+ +S LD + +A+ + +
Sbjct: 129 T---NLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELL 185
Query: 547 VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVME 577
+ I++ H L + D+I ++ +
Sbjct: 186 KNKYVIVVDHDLIVLDYLTDLIHIIYGESSVY 217
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 6e-05
Identities = 12/89 (13%), Positives = 29/89 (32%), Gaps = 1/89 (1%)
Query: 981 RYTKIEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSG 1040
R +I+ E + D + + + G+ ++G +G
Sbjct: 246 RPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDF-QLVVDNGEAKEGEIIGILGPNG 304
Query: 1041 SGKSTIIGLIERFYDPLKGDVKIDDRDIR 1069
GK+T ++ +G V + + +
Sbjct: 305 IGKTTFARILVGEITADEGSVTPEKQILS 333
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 9e-04
Identities = 15/75 (20%), Positives = 32/75 (42%), Gaps = 14/75 (18%)
Query: 1020 FEGFSIKI-EAGKSTALVGQSGSGKSTII-----GLIERFYDPLKGDVKIDDRDIRSYHL 1073
F+ F + + ++G++G GK+T++ +I F D + K+ ++ L
Sbjct: 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGD---PNSKVGKDEV----L 66
Query: 1074 RSLRRH-IALVSQEP 1087
+ R I +E
Sbjct: 67 KRFRGKEIYNYFKEL 81
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 1e-27
Identities = 54/272 (19%), Positives = 98/272 (36%), Gaps = 29/272 (10%)
Query: 340 RVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSG 399
R +I + V + + Y S + I G+ + +VG +G
Sbjct: 267 RPYEIKFTKTGERVEIERETLVTYPRLVKDYGSF----RLEVEPGEIKKGEVIGIVGPNG 322
Query: 400 SGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILF 459
GK+T + +L P G+I D K Q + V + L +
Sbjct: 323 IGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEG-TVYE---LLSKIDAS---- 374
Query: 460 GKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPR 519
+ S E K + + + +SGG+ QR+AIA +++
Sbjct: 375 --KLNSNFYKTELLKPLGIIDLYDREVNE-----------LSGGELQRVAIAATLLRDAD 421
Query: 520 ILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVM 576
I LLDE ++ LD E V A+ + +T +++ H + I +D + V +G+
Sbjct: 422 IYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVF-EGEPG 480
Query: 577 ETGSHDELIQAESGLYTSLVRLQTTTPDDNNN 608
+ G + G+ L + T D +
Sbjct: 481 KYGRALPPMGMREGMNRFLASIGITFRRDPDT 512
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 7e-24
Identities = 49/220 (22%), Positives = 89/220 (40%), Gaps = 38/220 (17%)
Query: 379 FKDFCL-TIPAGKTVALVGGSGSGKSTVIALLQRFYAP------LGGEIILDGVSIDKLQ 431
F + L + G V +VG +G+GKST + +L P + ++ ++LQ
Sbjct: 36 FVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQ 95
Query: 432 LKWL-----------RSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHN 480
+ + Q V P + E + E +EEV++A + N
Sbjct: 96 NYFEKLKNGEIRPVVKPQY--VDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLE 153
Query: 481 -FIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQ 539
I+ L SGG+ QR+AIA A+++ DE +S LD
Sbjct: 154 REIQHL---------------SGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAA 198
Query: 540 EALDK-AVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVME 577
A+ + + G++ +++ H L+ + +D+I VV +
Sbjct: 199 RAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGEPGVY 238
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 2e-04
Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 15/87 (17%)
Query: 1027 IEAGKSTALVGQSGSGKSTII-----GLIERFYD-PLKGDVKIDD---RDIRSYHLRSLR 1077
++ G +VG +G+GKST + LI D I ++++Y +
Sbjct: 44 VKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN 103
Query: 1078 RHIALVSQE------PTLFAGTIRENI 1098
I V + P G + E +
Sbjct: 104 GEIRPVVKPQYVDLIPKAVKGKVIELL 130
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 2e-04
Identities = 18/136 (13%), Positives = 49/136 (36%), Gaps = 22/136 (16%)
Query: 981 RYTKIEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSG 1040
R +I+ + + Y + E +I+ G+ +VG +G
Sbjct: 267 RPYEIKFTKTGERVEIERETLVTYPRLVKDYGSF----RLEVEPGEIKKGEVIGIVGPNG 322
Query: 1041 SGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTL---FAGTIREN 1097
GK+T + ++ +P +G ++ D + + + + + GT+ E
Sbjct: 323 IGKTTFVKMLAGVEEPTEGKIEWD---------------LTVAYKPQYIKADYEGTVYEL 367
Query: 1098 IAYGASDEIDESEIVE 1113
++ + +++ +
Sbjct: 368 LSKIDASKLNSNFYKT 383
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 113 bits (286), Expect = 2e-27
Identities = 62/216 (28%), Positives = 109/216 (50%), Gaps = 28/216 (12%)
Query: 380 KDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439
+ L + +G+ ++G +G+GK+ + L+ F+ P G I+LDG + L + + +
Sbjct: 17 DNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDI 74
Query: 440 GLVSQEPALFA-TSIKENILFG----KEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVG 494
V Q +LF ++K+N+ FG K + V++ A+ + + + P
Sbjct: 75 AFVYQNYSLFPHMNVKKNLEFGMRMKKIKDP-KRVLDTARDLKIEHLLDRNPLT------ 127
Query: 495 ERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDK--AVVGRTTI 552
+SGG++QR+A+ARA++ P+ILLLDE SALD ++ +E L T +
Sbjct: 128 -----LSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVL 182
Query: 553 IIAH----RLSTIRNADVIAVVQDGQVMETGSHDEL 584
I H AD IAVV DG++++ G +E+
Sbjct: 183 HITHDQTEARIM---ADRIAVVMDGKLIQVGKPEEI 215
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 7e-09
Identities = 26/101 (25%), Positives = 54/101 (53%), Gaps = 7/101 (6%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
IE++++ + + S+K+E+G+ ++G +G+GK+ + LI F+ P G +
Sbjct: 2 IEIESLSRKW----KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 1062 KIDDRDIRSYHLRSLRRHIALVSQEPTLFAG-TIRENIAYG 1101
+D +D+ L + IA V Q +LF +++N+ +G
Sbjct: 58 LLDGKDVT--DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFG 96
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 117 bits (294), Expect = 4e-27
Identities = 55/278 (19%), Positives = 105/278 (37%), Gaps = 29/278 (10%)
Query: 335 MEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVAL 394
+ R +I + + VE+ + Y S + I G+ + +
Sbjct: 332 ENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSF----KLEVEPGEIRKGEVIGI 387
Query: 395 VGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIK 454
VG +G GK+T + +L P G++ D K Q + V + L +
Sbjct: 388 VGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEG-TVYE---LLSKIDS 443
Query: 455 ENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAI 514
+ + E+++ + YD V + +SGG+ QR+AIA +
Sbjct: 444 SKL---NSNFYKTELLKPL----------GIIDLYDRNVED----LSGGELQRVAIAATL 486
Query: 515 IKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQ 571
++ I LLDE ++ LD E V A+ + +T +++ H + I +D + V
Sbjct: 487 LRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVF- 545
Query: 572 DGQVMETGSHDELIQAESGLYTSLVRLQTTTPDDNNNA 609
+G+ G + G+ L + T D ++
Sbjct: 546 EGEPGRHGRALPPMGMREGMNRFLASVGITFRRDPDSG 583
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 2e-26
Identities = 50/229 (21%), Positives = 90/229 (39%), Gaps = 19/229 (8%)
Query: 379 FKDFCL-TIPAGKTVALVGGSGSGKSTV---IALLQRFY---APLGGEIILDGVSIDKLQ 431
F + L + G V +VG +G+GK+T +A + ++ ++LQ
Sbjct: 106 FVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQ 165
Query: 432 LKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDT 491
+ R + G + + + GK +++V E K +L D
Sbjct: 166 NYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVK-ELELENVLDR 224
Query: 492 QVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDK-AVVGRT 550
++ Q+SGG+ QR+AIA A+++ DE +S LD V + + A G+
Sbjct: 225 ELH----QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKA 280
Query: 551 TIIIAHRLSTIRN-ADVIAVVQD-----GQVMETGSHDELIQAESGLYT 593
+++ H L+ + +DVI VV G + I Y
Sbjct: 281 VLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKPKGTRNGINEFLQGYL 329
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 1e-05
Identities = 24/136 (17%), Positives = 50/136 (36%), Gaps = 16/136 (11%)
Query: 978 VMDRYTKIEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVG 1037
V R +I +E + Y + E +I G+ +VG
Sbjct: 334 VRFRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSF----KLEVEPGEIRKGEVIGIVG 389
Query: 1038 QSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIREN 1097
+G GK+T + ++ +P +G V+ D +Y ++I + GT+ E
Sbjct: 390 PNGIGKTTFVKMLAGVEEPTEGKVEWDLT--VAYK----PQYIKAEYE------GTVYEL 437
Query: 1098 IAYGASDEIDESEIVE 1113
++ S +++ +
Sbjct: 438 LSKIDSSKLNSNFYKT 453
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 2e-26
Identities = 60/214 (28%), Positives = 111/214 (51%), Gaps = 21/214 (9%)
Query: 380 KDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439
+ I G+ V L+G SGSGK+T++ L+ P G++ + G + L + + +
Sbjct: 32 RGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQ--KRNV 89
Query: 440 GLVSQEPALFA-TSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGV 498
GLV Q ALF ++ +N+ FG + + + A+ F+ +L R
Sbjct: 90 GLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFM-RLE-----SYANRFP 143
Query: 499 -QMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV---VGRTTIII 554
++SGGQ+QR+A+ARA+ P++LL DE +A+D++ R ++ + + V +G T++ +
Sbjct: 144 HELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFV-RQVHDEMGVTSVFV 202
Query: 555 AH----RLSTIRNADVIAVVQDGQVMETGSHDEL 584
H L AD + V+ +G V + G+ +E+
Sbjct: 203 THDQEEALEV---ADRVLVLHEGNVEQFGTPEEV 233
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 67.6 bits (166), Expect = 6e-12
Identities = 41/126 (32%), Positives = 59/126 (46%), Gaps = 13/126 (10%)
Query: 992 GHQPERITGN--IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGL 1049
GH G+ IE V YP G S +I G+ L+G SGSGK+TI+ L
Sbjct: 3 GHHHHHHHGSMTIEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRL 60
Query: 1050 IERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAG-TIRENIAYG------A 1102
I P KGDV I + + + +R++ LV Q LF T+ +N+++G
Sbjct: 61 IAGLERPTKGDVWIGGKRVTDLPPQ--KRNVGLVFQNYALFQHMTVYDNVSFGLREKRVP 118
Query: 1103 SDEIDE 1108
DE+D
Sbjct: 119 KDEMDA 124
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 106 bits (268), Expect = 3e-26
Identities = 38/205 (18%), Positives = 83/205 (40%), Gaps = 31/205 (15%)
Query: 380 KDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439
+ +TI G V G +G GK+T++ + + PL GEII +GV I K+ + ++
Sbjct: 26 ERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKV-----KGKI 80
Query: 440 GLVSQEPALFAT-SIKENILF-------GKEDASMEEVIEAAKASNAHNFIRQLPQQYDT 491
+ +E + S+++ + + + +E+ + + + +L
Sbjct: 81 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGEL------ 134
Query: 492 QVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDK-AVVGRT 550
S G +R+ +A ++ I +LD+ A+D +S+ V +++ +
Sbjct: 135 ---------SQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGI 185
Query: 551 TIIIAHRLSTIRNADVIAVVQDGQV 575
II + + DV +
Sbjct: 186 VIISSREELSY--CDVNENLHKYST 208
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 5e-09
Identities = 27/139 (19%), Positives = 61/139 (43%), Gaps = 20/139 (14%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
+E++++ Y D + E ++ IE G G +G GK+T++ I + PLKG++
Sbjct: 11 LEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 66
Query: 1062 KIDDRDIRSYHLRSLRRHIALVSQEPTLFAG-TIRENIAYGAS--------DEIDESEIV 1112
+ I ++ I + +E + ++ + + AS +EI + +
Sbjct: 67 IYNGVPI-----TKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIM--DAL 119
Query: 1113 EAAKAANAHDFIAGLNEGY 1131
E+ + + + L++G
Sbjct: 120 ESVEVLDLKKKLGELSQGT 138
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 106 bits (268), Expect = 8e-26
Identities = 54/239 (22%), Positives = 97/239 (40%), Gaps = 45/239 (18%)
Query: 366 VQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGV 425
+ F Y + +F+ + G +A++G +G GKST++ LL + P+ G+I +
Sbjct: 10 LGFYYQAEN--FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQ- 66
Query: 426 SIDKLQLKWLRSQMGLVSQEP-ALFATSIKENILFG------------KEDASMEEVIEA 472
+G V Q + FA S+ + +L G D + ++A
Sbjct: 67 ------------SIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHD--YQVAMQA 112
Query: 473 AKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDS 532
N + + +SGGQ+Q I IARAI +++LLDE TSALD
Sbjct: 113 LDYLNLTHLA-------KREFTS----LSGGQRQLILIARAIASECKLILLDEPTSALDL 161
Query: 533 ESERVVQEALDKAVV--GRTTIIIAHRLST-IRNADVIAVVQDGQVMETGSHDELIQAE 588
++ +V L T + H+ + + A+ ++ G ++ +E
Sbjct: 162 ANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNFKF-GETRNILTSE 219
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 6e-12
Identities = 23/101 (22%), Positives = 49/101 (48%), Gaps = 16/101 (15%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
+ ++N+ F Y A +F+ + + G A++GQ+G GKST++ L+ + P++G +
Sbjct: 5 LSVENLGFYYQAEN--FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62
Query: 1062 KIDDRDIRSYHLRSLRRHIALVSQEPTL-FAGTIRENIAYG 1101
++ + I V Q + FA ++ + + G
Sbjct: 63 EVY-------------QSIGFVPQFFSSPFAYSVLDIVLMG 90
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 8e-26
Identities = 56/213 (26%), Positives = 95/213 (44%), Gaps = 29/213 (13%)
Query: 380 KDFCLTIPAGKTVALVGGSGSGKST---VIALLQRFYAPLGGEIILDGVSIDKL---QLK 433
K L++ G+ V+++G SGSGKST ++ LL P G++ L+G +D +L
Sbjct: 21 KGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA---PTEGKVFLEGKEVDYTNEKELS 77
Query: 434 WLRSQM-GLVSQEPALFA-TSIKENI----LFGKEDAS--MEEVIEAAKASNAHNFIRQL 485
LR++ G V Q L + EN+ L + E + + +
Sbjct: 78 LLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRK 137
Query: 486 PQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDK- 544
P + +SGG++QR+AIARA+ P +L DE T LDS + + V + K
Sbjct: 138 PYE-----------LSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKI 186
Query: 545 AVVGRTTIIIAHRLSTIRNADVIAVVQDGQVME 577
G + +++ H ++DG+V+
Sbjct: 187 NEGGTSIVMVTHERELAELTHRTLEMKDGKVVG 219
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 54.4 bits (132), Expect = 4e-08
Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 13/91 (14%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKST---IIGLIERFYDPLK 1058
+ +N+ I +G S+ ++ G+ +++G SGSGKST I+GL++ P +
Sbjct: 5 LRAENIKKVIR---GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA---PTE 58
Query: 1059 GDVKIDDRDIRSYHLRSL----RRHIALVSQ 1085
G V ++ +++ + + L R + V Q
Sbjct: 59 GKVFLEGKEVDYTNEKELSLLRNRKLGFVFQ 89
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 1e-25
Identities = 55/239 (23%), Positives = 106/239 (44%), Gaps = 27/239 (11%)
Query: 380 KDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439
K I G+ L+G +G+GK+T + ++ P G + + G ++ + + +R +
Sbjct: 32 KGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLI 90
Query: 440 GLVSQEPALFAT-SIKENILF--------GKE-DASMEEVIEAAKASNAHNFIRQLPQQY 489
+ +E + E + F E + +E E A L ++
Sbjct: 91 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIA----------GLGEKI 140
Query: 490 DTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGR 549
+V S G +++ IARA++ PR+ +LDE TS LD + R V++ L +A
Sbjct: 141 KDRVST----YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEG 196
Query: 550 TTIII-AHRLSTI-RNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQTTTPDDN 606
TI++ +H + + D IA++ +G ++ETG+ +EL + V + +N
Sbjct: 197 LTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNIEEVFEEVVKCSEN 255
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 9e-07
Identities = 26/140 (18%), Positives = 60/140 (42%), Gaps = 14/140 (10%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
+ ++++ + + +G S +IE G+ L+G +G+GK+T + +I P G V
Sbjct: 16 VVVKDLRKRIGKKEIL---KGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIV 72
Query: 1062 KIDDRDIRSYHLRSLRRHIALVSQEPTLFAG-TIRENIA-----YGASDEIDESEIVEAA 1115
+ +++ +R+ I+ + +E + E + Y +S E + A
Sbjct: 73 TVFGKNVVE-EPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERAT 131
Query: 1116 KAAN----AHDFIAGLNEGY 1131
+ A D ++ ++G
Sbjct: 132 EIAGLGEKIKDRVSTYSKGM 151
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 106 bits (268), Expect = 6e-25
Identities = 63/221 (28%), Positives = 104/221 (47%), Gaps = 31/221 (14%)
Query: 380 KDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDG--VSIDKLQLKWLRS 437
D L++ G+ + ++G SG GK+T++ L F P GEI L G + L
Sbjct: 21 NDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER 80
Query: 438 QMGLVSQEPALFA-TSIKENILFGKEDASMEEVIEAAKASNA------HNFIRQLPQQYD 490
++G + QE LF ++ NI +G + E + + P
Sbjct: 81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPH--- 137
Query: 491 TQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV---V 547
++SGGQ+QR A+ARA+ P ++LLDE SALD + R ++E + A
Sbjct: 138 --------ELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDM-IAALRAN 188
Query: 548 GRTTIIIAH----RLSTIRNADVIAVVQDGQVMETGSHDEL 584
G++ + ++H L AD IAV++ G++++T S EL
Sbjct: 189 GKSAVFVSHDREEALQY---ADRIAVMKQGRILQTASPHEL 226
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 4e-11
Identities = 26/106 (24%), Positives = 53/106 (50%), Gaps = 6/106 (5%)
Query: 999 TGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLK 1058
T + + ++ ++ P + S+ ++ G+ ++G SG GK+T++ + F P
Sbjct: 2 TAALHIGHLSKSFQNTPVL---NDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDS 58
Query: 1059 GDVKIDDRDI--RSYHLRSLRRHIALVSQEPTLFAG-TIRENIAYG 1101
G++ + + I ++ +L R + + QE LF T+ NIAYG
Sbjct: 59 GEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYG 104
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 94.6 bits (236), Expect = 7e-21
Identities = 60/246 (24%), Positives = 111/246 (45%), Gaps = 41/246 (16%)
Query: 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGE 419
+ K V + + + + I G+ ++G SG+GK+T + ++ P GE
Sbjct: 3 RIIVKNVSKVFKKGKVVAL-DNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 420 IILDGVSIDKLQLKWLRSQ---MGLVSQEPALFAT-SIKENILFGKEDASM------EEV 469
+ D + + + +G+V Q AL+ + ENI F + M + V
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV 121
Query: 470 IEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSA 529
E AK + H+ + P++ +SG Q+QR+A+ARA++K P +LLLDE S
Sbjct: 122 EEVAKILDIHHVLNHFPRE-----------LSGAQQQRVALARALVKDPSLLLLDEPFSN 170
Query: 530 LD--------SESERVVQEALDKAVVGRTTIIIAHRLS---TIRNADVIAVVQDGQVMET 578
LD + + V +G T ++++H + I AD + V+ G++++
Sbjct: 171 LDARMRDSARALVKEVQSR------LGVTLLVVSHDPADIFAI--ADRVGVLVKGKLVQV 222
Query: 579 GSHDEL 584
G ++L
Sbjct: 223 GKPEDL 228
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 1e-12
Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 12/126 (9%)
Query: 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGD 1060
I ++NV + V+ + +I IE G+ ++G SG+GK+T + +I P G+
Sbjct: 3 RIIVKNVSKVFKK-GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 1061 VKIDDRDIRSYHLRSL---RRHIALVSQEPTLFAG-TIRENIAYG------ASDEIDESE 1110
+ DDR + S + R I +V Q L+ T ENIA+ + +EI +
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRK-R 120
Query: 1111 IVEAAK 1116
+ E AK
Sbjct: 121 VEEVAK 126
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 81.9 bits (203), Expect = 2e-16
Identities = 76/249 (30%), Positives = 126/249 (50%), Gaps = 54/249 (21%)
Query: 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTV---IALLQRFYAPL 416
E++ + + + + + L I G+ +AL+G SGSGKST+ IA + Y P
Sbjct: 3 EIKLENIVKKFGNFT---ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGI---YKPT 56
Query: 417 GGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFAT-SIKENILFG------KEDASMEEV 469
G+I D + +L K R+ +GLV Q AL+ ++ +NI F + ++V
Sbjct: 57 SGKIYFDEKDVTELPPK-DRN-VGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKV 114
Query: 470 IEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSA 529
E AK + + + P Q +SGGQ+QR+AIARA++K P +LLLDE S
Sbjct: 115 REVAKMLHIDKLLNRYPWQ-----------LSGGQQQRVAIARALVKEPEVLLLDEPLSN 163
Query: 530 LD--------SESERVVQEALDKAVVGRTTIIIAH------RLSTIRNADVIAVVQDGQV 575
LD +E +R+ +E +G TT+ + H + AD IAV+++G++
Sbjct: 164 LDALLRLEVRAELKRLQKE------LGITTVYVTHDQAEALAM-----ADRIAVIREGEI 212
Query: 576 METGSHDEL 584
++ G+ DE+
Sbjct: 213 LQVGTPDEV 221
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 4e-11
Identities = 38/126 (30%), Positives = 64/126 (50%), Gaps = 19/126 (15%)
Query: 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGD 1060
I+L+N+ + + ++KI+ G+ AL+G SGSGKST++ I Y P G
Sbjct: 3 EIKLENIVKKFG---NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGK 59
Query: 1061 VKIDDRDIRSYHLRSLRRHIALVSQE----PTLFAGTIRENIAYG------ASDEIDESE 1110
+ D++D+ L R++ LV Q P + T+ +NIA+ +EID+ +
Sbjct: 60 IYFDEKDVT--ELPPKDRNVGLVFQNWALYPHM---TVYKNIAFPLELRKAPREEIDK-K 113
Query: 1111 IVEAAK 1116
+ E AK
Sbjct: 114 VREVAK 119
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 77.5 bits (192), Expect = 7e-16
Identities = 56/224 (25%), Positives = 105/224 (46%), Gaps = 39/224 (17%)
Query: 384 LTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVS 443
L +P G+ V L+G +G+GK+T ++ + G+II +G I + ++MG+
Sbjct: 27 LKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKP-AHVINRMGIA- 84
Query: 444 QEP---ALFAT-SIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDT--QVGERG 497
P +F ++ EN++ G A + R L + ++ ER
Sbjct: 85 LVPEGRRIFPELTVYENLMMG-----------AYNRKDKEGIKRDLEWIFSLFPRLKERL 133
Query: 498 VQ----MSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGR---- 549
Q +SGG++Q +AI RA++ P++L++DE + L + +V E + V+ +
Sbjct: 134 KQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGL---APILVSEVFE--VIQKINQE 188
Query: 550 -TTIII----AHRLSTIRNADVIAVVQDGQVMETGSHDELIQAE 588
TTI++ A ++ A V++ GQ++ G EL+ E
Sbjct: 189 GTTILLVEQNALG--ALKVAHYGYVLETGQIVLEGKASELLDNE 230
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 53.2 bits (129), Expect = 1e-07
Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 7/103 (6%)
Query: 1003 ELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVK 1062
E+Q++H Y A + +G +K+ G+ L+G +G+GK+T + I KG +
Sbjct: 8 EVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKII 64
Query: 1063 IDDRDI--RSYHLRSLRRHIALVSQEPTLFAG-TIRENIAYGA 1102
+ +DI + H+ R IALV + +F T+ EN+ GA
Sbjct: 65 FNGQDITNKPAHVI-NRMGIALVPEGRRIFPELTVYENLMMGA 106
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 76.6 bits (188), Expect = 3e-14
Identities = 42/241 (17%), Positives = 84/241 (34%), Gaps = 37/241 (15%)
Query: 322 KYFSEAMAAGERIMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKD 381
Y + + + + + + + G ++ E E C + I+
Sbjct: 394 PYMTIFLHEKKAKDILDEFRKRAVDNIPVGPNFDDEEDEGEDLCNCEFSLAYGAKILLNK 453
Query: 382 FCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGL 441
L + + + G +G GKST++ + + G +
Sbjct: 454 TQLRLKRARRYGICGPNGCGKSTLMRAIAN--GQVDGFPTQEECRT------------VY 499
Query: 442 VSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQL------PQQYDTQVGE 495
V + I D S+ + + + +L + +
Sbjct: 500 VEHD-----------IDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISA 548
Query: 496 RGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIA 555
+SGG K ++A+ARA+++ ILLLDE T+ LD+ + + L+ G T+I I+
Sbjct: 549 ----LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTC--GITSITIS 602
Query: 556 H 556
H
Sbjct: 603 H 603
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 63.1 bits (153), Expect = 5e-10
Identities = 35/238 (14%), Positives = 85/238 (35%), Gaps = 22/238 (9%)
Query: 352 EILENVLGEVEFKCVQFAYPSRPESIIFKDFC--LTIPAGKTVALVGGSGSGKSTVIALL 409
+E+ L + + +Q+ + + + + + + + + +
Sbjct: 747 AHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIH 806
Query: 410 QRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEV 469
R E + + + +K R + + + + M
Sbjct: 807 SRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWI------PRGELVESHSKMVAE 860
Query: 470 IEAAKASNAHNFIRQLPQQYDTQVGERGV-----------QMSGGQKQRIAIARAIIKAP 518
++ +A + F ++ + G+ +SGGQK ++ +A + P
Sbjct: 861 VDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRP 920
Query: 519 RILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQV 575
+++LDE T+ LD +S + +AL + III H +N + + V+DG++
Sbjct: 921 HLIVLDEPTNYLDRDSLGALSKALKE--FEGGVIIITHSAEFTKNLTEEVWAVKDGRM 976
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 4e-05
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
+++ N+ F YP + + A++G +G+GKST+I ++ P G+V
Sbjct: 672 VKVTNMEFQYPG-TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
Query: 1062 KI 1063
Sbjct: 731 YT 732
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 3e-04
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 367 QFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI 420
+F YP + D +A++G +G+GKST+I +L P GE+
Sbjct: 678 EFQYPGTSK-PQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 74.6 bits (184), Expect = 4e-14
Identities = 67/229 (29%), Positives = 111/229 (48%), Gaps = 51/229 (22%)
Query: 380 KDFCLTIPAGKTVALVGGSGSGKSTV---IALLQRFYAPLGGEIILDGVSIDKLQLKWLR 436
+ G+ VAL+G SG GK+T +A + + P GEI D V ++ + K
Sbjct: 20 DGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK---PTSGEIYFDDVLVNDIPPK--Y 74
Query: 437 SQMGLVSQEPALFAT-SIKENILFG------KEDASMEEVIEAAKASNAHNFIRQLPQQY 489
++G+V Q AL+ ++ ENI F +D + V+E A+ N + + P Q
Sbjct: 75 REVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQ- 133
Query: 490 DTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALD--------SESERVVQEA 541
+SGGQ+QR+A+ARA++K P++LL DE S LD +E + + QE
Sbjct: 134 ----------LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQE- 182
Query: 542 LDKAVVGRTTIIIAH------RLSTIRNADVIAVVQDGQVMETGSHDEL 584
+G T++ + H + A IAV G++++ G+ DE+
Sbjct: 183 -----LGITSVYVTHDQAEAMTM-----ASRIAVFNQGKLVQYGTPDEV 221
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 59.5 bits (145), Expect = 2e-09
Identities = 33/126 (26%), Positives = 62/126 (49%), Gaps = 19/126 (15%)
Query: 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGD 1060
+I + N+ + V +G S +++ G+ AL+G SG GK+T + ++ Y P G+
Sbjct: 3 SIRVVNLKKYFG---KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGE 59
Query: 1061 VKIDDRDIRSYHLRSLRRHIALVSQE----PTLFAGTIRENIAYG------ASDEIDESE 1110
+ DD + + R + +V Q P + T+ ENIA+ + DE+++
Sbjct: 60 IYFDDVLVN--DIPPKYREVGMVFQNYALYPHM---TVFENIAFPLRARRISKDEVEK-R 113
Query: 1111 IVEAAK 1116
+VE A+
Sbjct: 114 VVEIAR 119
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 72.5 bits (179), Expect = 4e-14
Identities = 53/225 (23%), Positives = 99/225 (44%), Gaps = 24/225 (10%)
Query: 381 DFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440
+++ G ++G +GSGKST+I ++ F G + + I + G
Sbjct: 25 GVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKE-PAELYHYG 83
Query: 441 LVS--QEPALFAT-SIKENILFGKEDASMEEVI-----------EAAKASNAHNFIR--Q 484
+V Q P ++ EN+L G+ E + E A + +
Sbjct: 84 IVRTFQTPQPLKEMTVLENLLIGE-ICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 142
Query: 485 LPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSAL-DSESERVVQEALD 543
L YD + G ++SGGQ + + I RA++ P+++++DE + + + + L+
Sbjct: 143 LSHLYDRKAG----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLE 198
Query: 544 KAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQA 587
G T +II HRL + N D + V+ +GQ++ G +E I+
Sbjct: 199 LKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 243
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 7e-06
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
Query: 1022 GFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDI---RSYHLRSLRR 1078
G SI + G T ++G +GSGKST+I +I F +G V +++DI L
Sbjct: 25 GVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL--YHY 82
Query: 1079 HIALVSQEPTLFAG-TIRENIAYGA 1102
I Q P T+ EN+ G
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGE 107
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 74.2 bits (183), Expect = 5e-14
Identities = 69/249 (27%), Positives = 109/249 (43%), Gaps = 54/249 (21%)
Query: 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTV---IALLQRFYAPL 416
EV+ + + + + LTI G+ + L+G SG GK+T IA L+ P
Sbjct: 11 EVKLENLTKRFGNFT---AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE---PT 64
Query: 417 GGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFAT-SIKENILFG------KEDASMEEV 469
G I + L K M V Q A++ ++ ENI F +D + V
Sbjct: 65 EGRIYFGDRDVTYLPPKDRNISM--VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRV 122
Query: 470 IEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSA 529
AA+ + + P Q +SGGQ+QR+A+ARAI+ P +LL+DE S
Sbjct: 123 RWAAELLQIEELLNRYPAQ-----------LSGGQRQRVAVARAIVVEPDVLLMDEPLSN 171
Query: 530 LD--------SESERVVQEALDKAVVGRTTIIIAH------RLSTIRNADVIAVVQDGQV 575
LD +E +++ Q+ + TTI + H + D IAV+ GQ+
Sbjct: 172 LDAKLRVAMRAEIKKLQQK------LKVTTIYVTHDQVEAMTM-----GDRIAVMNRGQL 220
Query: 576 METGSHDEL 584
++ GS E+
Sbjct: 221 LQIGSPTEV 229
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 2e-09
Identities = 37/130 (28%), Positives = 63/130 (48%), Gaps = 27/130 (20%)
Query: 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKST----IIGLIERFYDP 1056
++L+N+ + + ++ I+ G+ L+G SG GK+T I GL E +P
Sbjct: 11 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGL-E---EP 63
Query: 1057 LKGDVKIDDRDIRSYHLRSLRRHIALVSQE----PTLFAGTIRENIAYG------ASDEI 1106
+G + DRD+ +L R+I++V Q P + T+ ENIA+ DEI
Sbjct: 64 TEGRIYFGDRDVT--YLPPKDRNISMVFQSYAVWPHM---TVYENIAFPLKIKKFPKDEI 118
Query: 1107 DESEIVEAAK 1116
D+ + AA+
Sbjct: 119 DK-RVRWAAE 127
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 1e-13
Identities = 62/255 (24%), Positives = 112/255 (43%), Gaps = 60/255 (23%)
Query: 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTV---IALLQRFYAPL 416
V V + ++ L + G+ + L+G SG GK+T IA L+ P
Sbjct: 3 GVRLVDVWKVFGEVT---AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE---PS 56
Query: 417 GGEIILDGVSI-DKLQLKWLRSQ-----MGLVSQEPALFAT-SIKENILFGKEDASM--- 466
G+I + + D + ++ + M V Q AL+ ++ +NI F + +
Sbjct: 57 RGQIYIGDKLVADPEKGIFVPPKDRDIAM--VFQSYALYPHMTVYDNIAFPLKLRKVPRQ 114
Query: 467 ---EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLL 523
+ V E A+ + + P++ +SGGQ+QR+A+ RAI++ P++ L+
Sbjct: 115 EIDQRVREVAELLGLTELLNRKPRE-----------LSGGQRQRVALGRAIVRKPQVFLM 163
Query: 524 DEATSALD--------SESERVVQEALDKAVVGRTTIIIAH------RLSTIRNADVIAV 569
DE S LD +E +++ ++ +G TTI + H + D IAV
Sbjct: 164 DEPLSNLDAKLRVRMRAELKKLQRQ------LGVTTIYVTHDQVEAMTM-----GDRIAV 212
Query: 570 VQDGQVMETGSHDEL 584
+ G + + GS DE+
Sbjct: 213 MNRGVLQQVGSPDEV 227
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 2e-09
Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 29/134 (21%)
Query: 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKST----IIGLIERFYDP 1056
+ L +V + +V S++++ G+ L+G SG GK+T I GL E +P
Sbjct: 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGL-E---EP 55
Query: 1057 LKGDVKIDDRDI----RSYHLRSLRRHIALVSQE----PTLFAGTIRENIAYG------A 1102
+G + I D+ + + + R IA+V Q P + T+ +NIA+
Sbjct: 56 SRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHM---TVYDNIAFPLKLRKVP 112
Query: 1103 SDEIDESEIVEAAK 1116
EID+ + E A+
Sbjct: 113 RQEIDQ-RVREVAE 125
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 73.0 bits (178), Expect = 4e-13
Identities = 93/584 (15%), Positives = 170/584 (29%), Gaps = 187/584 (32%)
Query: 334 IMEMIKRVPKIDSDSMEG--EILENVLGEVEFKCVQFA-YP-SRPESII-FKDFCLTIPA 388
+M IK + S E + + + + FA Y SR + + + L +
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ----VFAKYNVSRLQPYLKLRQALLELRP 149
Query: 389 GKTVALVGGSGSGKSTVIALLQRFYAPL---GGEIILDGVSIDKLQLKWLRSQMGLVSQE 445
K V + G GSGK+ V + Y +I WL
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF------------WLN--------- 188
Query: 446 PALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQK 505
+ S E V+E + Q+ + T + S K
Sbjct: 189 -------------LKNCN-SPETVLE-----MLQKLLYQIDPNW-TSRSDH----SSNIK 224
Query: 506 QRIAIARAIIKA-------PRILL-LDEATSALDSESERVVQEALDKAVVGRTTIIIAHR 557
RI +A ++ LL L + ++ + A + I++
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVLL------NVQNAKAW-NAFN----LSCKILL--- 270
Query: 558 LSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQTTTPDDNNNATMHSLASK 617
T R V + +H L L TPD+ SL K
Sbjct: 271 --TTRFKQVTDFLSAATT----THISLDHHSMTL----------TPDE----VK-SLLLK 309
Query: 618 SSNMD-------MNSTSSRRLSIV--SLSSSANSF-----AQGRGASQSNEEDIKKLPVP 663
+ + +T+ RRLSI+ S+ ++ + E + L
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369
Query: 664 SFRRL-VAL-------NAPE------WKQATLGCVGATLFGAVQPIYAFAMGSMI----- 704
+R++ L + P W V + S++
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV-------NKLHKYSLVEKQPK 422
Query: 705 -SVYFLTD-HDEIKKKTSIYAFCFLGLAVFTLVINIIQHYN------------------- 743
S + + E+K K L +I+ HYN
Sbjct: 423 ESTISIPSIYLELKVKLENEY---------ALHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473
Query: 744 FAYMGEHLTK-RIRER--MLSKILTFEVGWFDQ-------DENSSGAICSRLAKDANVVR 793
++++G HL ER + + + + +Q N+SG+I + L +
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVF-LDFRFLEQKIRHDSTAWNASGSILNTLQ-QLKFYK 531
Query: 794 SLVGDRTALLVQTISAVTIAFTMG----LFIAWRLALVMIAVQP 833
+ D + ++A+ + F L + L+ IA+
Sbjct: 532 PYICDNDPKYERLVNAI-LDFLPKIEENLICSKYTDLLRIALMA 574
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.1 bits (129), Expect = 3e-07
Identities = 79/606 (13%), Positives = 145/606 (23%), Gaps = 180/606 (29%)
Query: 553 IIAHRLST-IRNADVIAVVQD--GQVMETGSHDELIQ---AESGLYTSLVRLQTTTPDDN 606
I++ + N D VQD ++ D +I A SG RL T
Sbjct: 21 ILSVFEDAFVDNFDC-KDVQDMPKSILSKEEIDHIIMSKDAVSGTL----RLFWTLLSKQ 75
Query: 607 NNATMHSLASKSSNMDMNSTSSRRLSIVSLSSSAN--SFAQGRGASQSNEEDIKKLPVPS 664
+ + ++ S + S + + R ++ + K V
Sbjct: 76 EE-MVQKFVEEVLRINYKFLMSP-IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR 133
Query: 665 FRRLVALNA------PEWKQATL----GC-----VGATL-FGAVQPIYAFAMGSMISVYF 708
+ + L P K + G VQ F +++
Sbjct: 134 LQPYLKLRQALLELRPA-KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK------IFW 186
Query: 709 LT------DHDEIKKKTSIYAFCFLGLAVFTLVINIIQHYNFAYMGEHLTKRIRERMLSK 762
L ++ + N + +R + SK
Sbjct: 187 LNLKNCNSPETVLEMLQKLLY-----QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241
Query: 763 -------ILTFEVGW-------FDQDENSSGAICSRLA--KDANVVRSLVGDRTA--LLV 804
+L V F+ C L + V L T L
Sbjct: 242 PYENCLLVLL-NV-QNAKAWNAFNLS-------CKILLTTRFKQVTDFLSAATTTHISLD 292
Query: 805 QTISAVTIAFTMGLFIAW------RLALVMIAVQPLVIICF------------YARRVLL 846
+T L + + L ++ P + + V
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC 352
Query: 847 KSMSNKAIKA----------QA---------ESSKLAAEAVSNLRTITAFSSQHRILKML 887
+ I++ + S+ + +S + S ++ L
Sbjct: 353 DKL-TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL 411
Query: 888 EK---AQQGPRRESIRQSWYAGIGLAFSQSLA-------------SCTWALDFWYGGRLI 931
K ++ P+ +I I L L + D
Sbjct: 412 HKYSLVEKQPKESTIS---IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY 468
Query: 932 ADGYISS--------------KALFET------FMILVSTGRVIADAGSMTTDIAKGSDA 971
D Y S LF F+ ++ D+ T A GS
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFL----EQKIRHDS---TAWNASGS-- 519
Query: 972 VGSVFAVMDRYTK-IEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAG 1030
+ + + Y I DP+ ER+ I F +++
Sbjct: 520 ILNTLQQLKFYKPYICDNDPK---YERLVNAIL----DFLPKIEENLIC----------S 562
Query: 1031 KSTALV 1036
K T L+
Sbjct: 563 KYTDLL 568
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 6e-04
Identities = 22/172 (12%), Positives = 45/172 (26%), Gaps = 39/172 (22%)
Query: 978 VMDRYTKIEPEDPEGHQPERITGNIELQNVHFAYP----ARPDVM--IFEGFSIKIEAGK 1031
+M K E P I L N + + +R + + ++ K
Sbjct: 94 LMSPI-KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL-ELRPAK 151
Query: 1032 STALVGQSGSGKSTIIGLIERFYDPLK-----------GDVKIDDRDIRSYHLRSLRRHI 1080
+ + G GSGK+ + + Y + + + L+ L I
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE--MLQKLLYQI 209
Query: 1081 ALVSQEPTLFAGTIRENI--------------AYGAS----DEIDESEIVEA 1114
+ + I+ I Y + ++ A
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 62.9 bits (154), Expect = 2e-10
Identities = 71/230 (30%), Positives = 101/230 (43%), Gaps = 53/230 (23%)
Query: 380 KDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPL----GGEIILDGVSIDKLQLKWL 435
KD L I G+ V VG SG GKST LL R A L G++ + ++
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKST---LL-RMIAGLETITSGDLFIGEKRMNDTPPA-- 73
Query: 436 RSQMGLVSQEPALFA-TSIKENILFGKEDASM------EEVIEAAKASNAHNFIRQLPQQ 488
+G+V Q AL+ S+ EN+ FG + A + V + A+ + QL
Sbjct: 74 ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAE-------VLQLAHL 126
Query: 489 YDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERV--------VQE 540
D + +SGGQ+QR+AI R ++ P + LLDE S LD+ RV + +
Sbjct: 127 LD----RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAAL-RVQMRIEISRLHK 181
Query: 541 ALDKAVVGRTTIIIAH------RLSTIRNADVIAVVQDGQVMETGSHDEL 584
L GRT I + H L AD I V+ G+V + G EL
Sbjct: 182 RL-----GRTMIYVTHDQVEAMTL-----ADKIVVLDAGRVAQVGKPLEL 221
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 9e-08
Identities = 33/130 (25%), Positives = 61/130 (46%), Gaps = 27/130 (20%)
Query: 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKST----IIGLIERFYDP 1056
+++LQNV A+ +V++ + ++ I G+ VG SG GKST I GL E
Sbjct: 3 SVQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL-E---TI 55
Query: 1057 LKGDVKIDDRDIRSYHLRSLRRHIALVSQE----PTLFAGTIRENIAYG------ASDEI 1106
GD+ I ++ + R + +V Q P L ++ EN+++G + I
Sbjct: 56 TSGDLFIGEKRMN--DTPPAERGVGMVFQSYALYPHL---SVAENMSFGLKLAGAKKEVI 110
Query: 1107 DESEIVEAAK 1116
++ + + A+
Sbjct: 111 NQ-RVNQVAE 119
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 58.9 bits (142), Expect = 3e-09
Identities = 25/132 (18%), Positives = 51/132 (38%), Gaps = 12/132 (9%)
Query: 451 TSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQM-----SGGQK 505
+E L + + E E + + +R + V G + SGG++
Sbjct: 195 ALAREAALSKIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGER 254
Query: 506 Q------RIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRL 558
R+A++ + +L+LDE T LD E R + +++ + I+++H
Sbjct: 255 IALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE 314
Query: 559 STIRNADVIAVV 570
AD + +
Sbjct: 315 ELKDAADHVIRI 326
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 6e-09
Identities = 54/224 (24%), Positives = 99/224 (44%), Gaps = 33/224 (14%)
Query: 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALL--QRFYAPLGGEIILDGVSIDKLQLK-W 434
I + L + G+ A++G +GSGKST+ A L + Y GG + G + L L
Sbjct: 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDL--LALSPE 92
Query: 435 LRSQMGL------------VSQEPALFA--TSIKENILFGKEDASMEEVIEAAKASNAHN 480
R+ G+ VS + L +++ G+E + + +
Sbjct: 93 DRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSY--RGQETLDRFDFQDLMEEK---- 146
Query: 481 FIRQLPQQYDTQVGERGVQ--MSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVV 538
I L + + R V SGG+K+R I + + P + +LDE+ S LD ++ +VV
Sbjct: 147 -IALL--KMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVV 203
Query: 539 QEALDK-AVVGRTTIIIAH--RLSTIRNADVIAVVQDGQVMETG 579
+ ++ R+ II+ H R+ D + V+ G+++++G
Sbjct: 204 ADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSG 247
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 7e-09
Identities = 60/219 (27%), Positives = 97/219 (44%), Gaps = 27/219 (12%)
Query: 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALL--QRFYAPLGGEIILDGVSIDKLQLKWL 435
I K L +P G+ AL+G +G+GKST+ +L Y GEI+LDG +I +L
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSP-DE 76
Query: 436 RSQMG--LVSQEP--------ALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQL 485
R++ G L Q P A F + + + E K + + L
Sbjct: 77 RARKGLFLAFQYPVEVPGVTIANFLRLALQAK--LGREVGVAEFWTKVKKA-----LELL 129
Query: 486 PQQYDTQVGERGVQ--MSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALD 543
+D R + SGG+K+R I + ++ P +LDE S LD ++ +VV ++
Sbjct: 130 --DWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVN 187
Query: 544 K-AVVGRTTIIIAH--RLSTIRNADVIAVVQDGQVMETG 579
++I H R+ D + V+ DG+V+ TG
Sbjct: 188 AMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATG 226
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 1e-07
Identities = 17/76 (22%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Query: 499 QMSGGQKQRIAIA------RAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTT 551
+SGG++ + +A + +L+LDE T LD E R + +++ +
Sbjct: 57 FLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQV 116
Query: 552 IIIAHRLSTIRNADVI 567
I+++H AD +
Sbjct: 117 ILVSHDEELKDAADHV 132
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 7e-06
Identities = 29/128 (22%), Positives = 46/128 (35%), Gaps = 8/128 (6%)
Query: 452 SIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGV-QMSGGQKQRI-- 508
++E + + E E + + + G + +SGG++ +
Sbjct: 232 YLREKYVPLIQKYLNEAFSEFDLPYSFVELTKDFEVRVHAPNGVLTIDNLSGGEQIAVAL 291
Query: 509 ----AIARAIIKAP-RILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN 563
AIA A+I ++LDE T LD + E K III H
Sbjct: 292 SLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDV 351
Query: 564 ADVIAVVQ 571
ADVI V+
Sbjct: 352 ADVIINVK 359
|
| >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 | Back alignment and structure |
|---|
Score = 40.3 bits (93), Expect = 7e-04
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 14/42 (33%)
Query: 428 DKLQLKWLRSQMGLVSQE--PALFATSIKENILFGKEDASME 467
+K LK L++ + L + + PAL +IK A+ME
Sbjct: 18 EKQALKKLQASLKLYADDSAPAL---AIK---------ATME 47
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1133 | |||
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.98 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.97 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.96 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.95 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.95 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.95 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.95 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.95 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 99.94 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.93 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 99.93 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 99.93 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 99.93 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.92 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.92 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.91 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 99.91 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.9 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.9 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.9 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.89 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.89 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.89 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.88 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 99.87 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 99.87 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 99.86 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.86 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.86 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 99.86 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 99.86 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 99.86 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 99.85 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 99.85 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 99.85 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 99.85 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 99.85 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 99.85 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 99.85 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 99.85 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 99.84 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.84 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 99.84 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 99.84 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 99.84 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.84 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 99.83 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 99.83 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 99.83 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 99.83 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.82 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 99.82 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 99.82 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.82 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.82 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.82 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.82 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 99.81 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 99.81 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 99.81 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 99.81 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 99.79 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 99.79 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.78 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.78 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 99.78 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.77 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.76 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.76 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.76 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.75 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.75 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.75 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.75 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.74 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.72 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 99.71 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.69 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.69 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.69 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.69 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.69 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.68 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.68 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.68 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.68 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.68 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.67 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.66 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.65 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.63 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.62 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.61 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.6 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.59 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.57 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.57 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.56 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.54 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.53 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.48 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.48 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.47 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.46 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.46 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.45 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.44 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.42 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.39 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.39 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 99.38 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.38 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.37 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.35 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.34 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.32 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.32 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.31 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.3 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.28 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.27 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.27 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.27 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.27 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.26 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.26 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.26 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.25 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.24 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.22 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 99.22 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.21 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.2 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.18 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.17 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.16 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.15 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.1 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.1 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.09 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.09 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 99.09 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.09 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.08 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 99.07 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.07 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 99.03 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.03 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.0 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 98.99 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 98.97 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.95 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 98.94 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 98.94 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.94 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 98.91 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.91 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.9 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 98.9 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 98.89 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.87 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.86 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.85 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 98.85 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.85 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.84 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.84 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 98.83 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.82 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.82 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 98.82 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 98.81 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 98.81 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.8 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.8 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 98.79 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 98.78 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 98.78 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 98.77 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 98.77 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 98.76 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.76 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 98.76 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.76 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.76 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.75 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.75 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.69 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 98.68 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.68 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 98.66 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 98.66 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.65 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 98.64 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 98.64 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 98.63 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.63 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 98.63 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.62 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.62 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 98.6 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 98.57 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.56 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 98.54 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 98.53 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 98.49 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.48 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 98.46 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.44 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 98.41 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 98.4 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.39 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.39 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 98.39 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 98.38 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.38 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.38 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 98.36 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.34 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.34 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 98.33 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 98.32 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.29 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.28 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 98.27 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 98.26 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.24 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.23 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.23 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 98.23 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 98.22 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 98.2 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 98.19 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 98.19 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 98.17 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 98.17 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.15 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 98.15 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 98.15 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 98.15 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.13 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 98.13 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 98.12 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.12 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.11 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.1 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.09 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 98.06 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.05 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.02 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.0 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.99 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 97.95 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.92 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.91 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 97.91 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 97.89 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.89 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 97.85 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 97.83 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 97.83 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.81 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 97.79 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.78 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.78 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.67 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.65 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.65 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.65 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.6 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 97.59 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 97.59 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 97.58 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 97.58 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 97.55 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 97.54 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 97.54 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 97.51 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 97.49 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 97.48 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 97.47 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.45 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 97.4 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 97.37 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 97.35 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.34 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 97.34 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 97.32 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 97.3 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 97.3 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 97.28 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.28 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.27 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 97.25 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 97.25 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 97.24 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 97.23 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 97.23 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.23 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 97.23 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 97.19 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.17 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 97.17 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 97.17 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.16 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 97.15 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 97.13 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.12 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 97.12 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 97.12 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 97.11 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 97.11 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 97.09 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 97.07 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 97.06 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 97.06 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.04 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.03 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.02 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 97.01 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 97.0 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 97.0 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 96.97 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 96.96 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 96.96 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.95 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 96.91 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 96.91 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 96.87 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 96.84 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 96.84 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 96.83 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 96.82 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 96.81 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.77 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 96.75 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.75 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.74 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 96.71 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 96.71 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.69 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 96.68 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 96.67 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 96.67 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 96.64 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 96.63 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.61 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 96.61 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.59 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 96.58 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 96.57 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.55 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 96.52 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 96.5 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.44 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 96.44 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.41 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.4 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 96.39 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 96.39 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.36 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 96.25 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 96.24 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 96.22 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.21 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 96.19 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.17 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 96.13 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.12 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 96.11 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 96.09 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 96.09 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 96.08 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 95.99 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 95.96 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 95.93 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 95.92 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 95.92 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 95.88 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 95.86 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 95.85 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 95.85 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 95.83 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 95.81 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 95.81 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 95.77 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 95.75 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 95.74 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 95.73 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 95.64 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 95.64 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 95.61 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 95.59 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 95.58 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 95.54 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 95.52 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 95.5 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 95.48 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 95.47 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 95.47 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 95.46 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 95.42 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 95.42 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 95.41 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 95.38 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 95.38 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 95.37 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 95.34 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 95.32 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 95.31 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 95.3 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 95.27 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 95.27 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 95.2 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 95.18 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 95.18 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 95.17 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 95.17 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 95.16 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 95.15 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 95.14 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 95.13 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 95.11 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 95.1 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 95.05 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 95.0 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 94.99 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 94.99 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 94.99 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 94.99 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 94.96 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 94.96 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 94.96 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 94.96 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 94.94 |
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-168 Score=1660.54 Aligned_cols=1115 Identities=32% Similarity=0.536 Sum_probs=959.4
Q ss_pred cccccchHHHHHhhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCC---------------CCChhhhhhh
Q 041277 14 TKTKNGSFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVS---------------NVPIDVFTHN 78 (1133)
Q Consensus 14 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~---------------~~~~~~~~~~ 78 (1133)
++.++.++++||+|+.+++++++++|++++++.|+..|++++++|++++.+.... ......+...
T Consensus 55 ~~~~~v~~~~Lfrya~~~d~~l~~~g~~~a~~~G~~~p~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (1321)
T 4f4c_A 55 EVVNKVSIPQLYRYTTTLEKLLLFIGTLVAVITGAGLPLMSILQGKVSQAFINEQIVINNNGSTFLPTGQNYTKTDFEHD 134 (1321)
T ss_dssp CCSSCCCHHHHTTTCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTSCBCSSTTCBCCHHHHHHH
T ss_pred cccCCCCHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccchHHHHHH
Confidence 3445678999999999999999999999999999999999999999998753210 0011122334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHh
Q 041277 79 INKNTVHLLYLALGSWVACFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISE 158 (1133)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~ 158 (1133)
+..+++++++++++.+++.+++.+++.+.++|+..++|.++|+|++++|++|||+ + ++|++++|+++|++.+++++++
T Consensus 135 ~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd~-~-~~G~l~sr~~~D~~~i~~~~~~ 212 (1321)
T 4f4c_A 135 VMNVVWSYAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFDT-N-HSGTLATKLFDNLERVKEGTGD 212 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHH-T-CCTTHHHHHHHHHHHHHHTSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC-C-ChHHHHHHHHHHHHHHHHHHHH
Confidence 5556677778888999999999999999999999999999999999999999996 6 9999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHc
Q 041277 159 KLPNFVMNASLFFGCYLVAFLMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFV 238 (1133)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~ 238 (1133)
.++.++..++.++++++++|+++|++++++++++|+++++..++.++.++..++.++..+++++.++|.++|+++||+|+
T Consensus 213 ~l~~~~~~~~~~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~ 292 (1321)
T 4f4c_A 213 KIGMAFQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLN 292 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHH
Q 041277 239 GESKTINEFSSALQGSVQLGLKQGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAG 317 (1133)
Q Consensus 239 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~ 317 (1133)
+|+.+.++|.+..++.++...+.....++..+ ..++..+.+++++|+|++++..|.+|+|.+++++.++.....|+..+
T Consensus 293 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~ 372 (1321)
T 4f4c_A 293 GLRYELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLA 372 (1321)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998888888 77888888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcccccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcC
Q 041277 318 LPNLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGG 397 (1133)
Q Consensus 318 ~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~ 397 (1133)
.+.+..++++.+|++||+++++.+|+.+.....+..+.+.+|.|+|+||+|+||+++++++|+|+||+|++||++|||||
T Consensus 373 ~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~ 452 (1321)
T 4f4c_A 373 GPQLAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGS 452 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEec
Confidence 99999999999999999999998876654333333344567899999999999987778899999999999999999999
Q ss_pred CCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhc
Q 041277 398 SGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASN 477 (1133)
Q Consensus 398 sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~ 477 (1133)
||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++||||+|+||||++||+|||.||.++.+++++++||+.++
T Consensus 453 sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~ 532 (1321)
T 4f4c_A 453 SGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMAN 532 (1321)
T ss_dssp SSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecC
Q 041277 478 AHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHR 557 (1133)
Q Consensus 478 ~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~ 557 (1133)
+++|++.||+||||.|||+|.+||||||||||||||+++||+||||||||||||+++|+.++++|+++.+|+|+|+||||
T Consensus 533 l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHr 612 (1321)
T 4f4c_A 533 AEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHR 612 (1321)
T ss_dssp CHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSC
T ss_pred chhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhcCCEEEEEeCCeEEeecCcchhccccchhhHHHHHhhcCCCCCC--------CCcccccccccccCCCCCCccc-
Q 041277 558 LSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQTTTPDDN--------NNATMHSLASKSSNMDMNSTSS- 628 (1133)
Q Consensus 558 ~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~- 628 (1133)
++++++||+|+||++|+|+|+|+|+||++ .++.|+++++.|...+..+ .+....................
T Consensus 613 ls~i~~aD~Iivl~~G~ive~Gth~eL~~-~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (1321)
T 4f4c_A 613 LSTIRNADLIISCKNGQVVEVGDHRALMA-QQGLYYDLVTAQTFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQASEMD 691 (1321)
T ss_dssp TTTTTTCSEEEEEETTEEEEEECHHHHHT-TTCHHHHHHHHHHHHHHHHHHHCC--------------------------
T ss_pred HHHHHhCCEEEEeeCCeeeccCCHHHHHH-hhhHHHHHHHhhhccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999998 6999999998774321100 0000000000000000000000
Q ss_pred ---cccccccc-ccccCccccCCCCC-CCc-------chhhcCCCchHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHH
Q 041277 629 ---RRLSIVSL-SSSANSFAQGRGAS-QSN-------EEDIKKLPVPSFRRLVALNAPEWKQATLGCVGATLFGAVQPIY 696 (1133)
Q Consensus 629 ---~~~~~~~~-~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (1133)
.+...... .........+.... ... +.+........+++++.+.+++|+.++++++++.+.+++.+.+
T Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~ 771 (1321)
T 4f4c_A 692 DIMNRVRSSTIGSITNGPVIDEKEERIGKDALSRLKQELEENNAQKTNLFEILYHARPHALSLFIGMSTATIGGFIYPTY 771 (1321)
T ss_dssp ------------------------CCCCCCHHHHHHHTTTTSCCCCCCHHHHHHHTGGGHHHHHHHHHHHHHGGGHHHHH
T ss_pred chhhhhhccccccccCCcchhHHHhhccchhHHHHHHHHHHcCCcceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000 00000000000000 000 0011122234566777888999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCC
Q 041277 697 AFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINIIQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDEN 776 (1133)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~ 776 (1133)
+++++.+++.+.... ........+|.++|++++++..++.+++.+++.+++.++..++|.++|++++++|++|||.++|
T Consensus 772 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~ 850 (1321)
T 4f4c_A 772 SVFFTSFMNVFAGNP-ADFLSQGHFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQN 850 (1321)
T ss_dssp HHHHHHHHHHTSSCS-STTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGG
T ss_pred HHHHHHHHHHhcCCc-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhccCCC
Confidence 999888887665332 2223344567888888999999999999999999999999999999999999999999997668
Q ss_pred ChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 777 SSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWRLALVMIAVQPLVIICFYARRVLLKSMSNKAIKA 856 (1133)
Q Consensus 777 ~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~w~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~ 856 (1133)
++|+++||+++|++.++..++..+..++..++.++++++++++++|++++++++++|+++++.++..+..+....+..+.
T Consensus 851 ~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 930 (1321)
T 4f4c_A 851 ASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASE 930 (1321)
T ss_dssp CHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSH
T ss_pred ChHHHHhcchhhHHHHHHHHHHHHHHHHHHhhhHHHHeeeehHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888887776666666666777
Q ss_pred HHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 041277 857 QAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSWYAGIGLAFSQSLASCTWALDFWYGGRLIADGYI 936 (1133)
Q Consensus 857 ~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~ 936 (1133)
.++...++.|+++|++|||+|+.|+++.++|.+..+...+...+..+..++..++...+..+..++++|+|+.++..+..
T Consensus 931 ~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~ 1010 (1321)
T 4f4c_A 931 FADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPP 1010 (1321)
T ss_dssp HHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSC
T ss_pred HHHHHHHHHHHHhhHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCcc
Confidence 78889999999999999999999999999999999999999999999999999999999999999999999999988876
Q ss_pred CHH--HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCcccEEEEeEEEECCCC
Q 041277 937 SSK--ALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRYTKIEPEDPEGHQPERITGNIELQNVHFAYPAR 1014 (1133)
Q Consensus 937 t~g--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~ 1014 (1133)
+.+ .++.++.++.....++..+..+.++++++..+++|++++++.+++.++.... .++++..|+|+|+||+|+||++
T Consensus 1011 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~-~~~~~~~g~I~f~nVsf~Y~~~ 1089 (1321)
T 4f4c_A 1011 TMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKISKIDSLSLA-GEKKKLYGKVIFKNVRFAYPER 1089 (1321)
T ss_dssp SSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHHHHHCCCSSCTTCCC-SBCCCCCCCEEEEEEEECCTTS
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCCccCC-CCCCCCCCeEEEEEEEEeCCCC
Confidence 654 4444444455555677778888999999999999999999987765433222 2234457999999999999988
Q ss_pred CCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcccccccccccccccH
Q 041277 1015 PDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTI 1094 (1133)
Q Consensus 1015 ~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTI 1094 (1133)
++.+||+||||+|+|||+||||||||||||||+++|+|||||++|+|+|||+||+++++++||++|++|||||+||+|||
T Consensus 1090 ~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTI 1169 (1321)
T 4f4c_A 1090 PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSI 1169 (1321)
T ss_dssp CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEH
T ss_pred CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccH
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCC-CCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1095 RENIAYGA-SDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1095 reNI~~g~-~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
||||+||. |++++|||||+||++|++||||++||+||||
T Consensus 1170 reNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT 1209 (1321)
T 4f4c_A 1170 AENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFET 1209 (1321)
T ss_dssp HHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCS
T ss_pred HHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCC
Confidence 99999994 4578999999999999999999999999998
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-149 Score=1473.61 Aligned_cols=1114 Identities=34% Similarity=0.607 Sum_probs=952.0
Q ss_pred ccchHHHHHhhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCC-------CC-------hhhhhhhHHHH
Q 041277 17 KNGSFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSN-------VP-------IDVFTHNINKN 82 (1133)
Q Consensus 17 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~-------~~-------~~~~~~~~~~~ 82 (1133)
...+++++++|..+.++.+++++++++++.++..|+++++++.++|.+..... .. .......+..+
T Consensus 31 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (1284)
T 3g5u_A 31 PAVSVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTY 110 (1284)
T ss_dssp --CTTHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhHHHHHHH
Confidence 34678899999888888888889999999999999999999999987642100 00 00011223445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHH
Q 041277 83 TVHLLYLALGSWVACFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPN 162 (1133)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~ 162 (1133)
.+++++++++.+++.+++.+++.+.++++..++|.++|+|++++|++|||+ + ++|++++|+++|++.+++.+...+..
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~-~-~~G~l~sr~~~D~~~i~~~~~~~~~~ 188 (1284)
T 3g5u_A 111 AYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDV-H-DVGELNTRLTDDVSKINEGIGDKIGM 188 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHS-C-CSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcc-C-CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677788888999999999999999999999999999999999999996 6 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHH
Q 041277 163 FVMNASLFFGCYLVAFLMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESK 242 (1133)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~ 242 (1133)
++..++.++++++++++++|++++++++++|+++++..++.++.++..++.++..+++++.+.|+++|+++||+|++|+.
T Consensus 189 ~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~ 268 (1284)
T 3g5u_A 189 FFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKK 268 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 243 TINEFSSALQGSVQLGLKQGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNL 321 (1133)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~ 321 (1133)
+.++|.+..++..+...+.....++..+ ..++.++..++++|+|++++..|.+++|.++++++++.....++..+.+.+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 348 (1284)
T 3g5u_A 269 ELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNI 348 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998888888888 777888888999999999999999999999988888888888999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCCCCcccccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCc
Q 041277 322 KYFSEAMAAGERIMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSG 401 (1133)
Q Consensus 322 ~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsG 401 (1133)
..++++.++++|++++++.+|+.++....+..+....|.|+++||+|+|+++++.++|+|+||+|++||++|||||||||
T Consensus 349 ~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsG 428 (1284)
T 3g5u_A 349 EAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCG 428 (1284)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSS
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCC
Confidence 99999999999999999987765432222223334568899999999998655567999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHH
Q 041277 402 KSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNF 481 (1133)
Q Consensus 402 KSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~ 481 (1133)
||||+++|+|+|+|++|+|.+||+|+++++.+++|++||||||+|++|++||+|||.+|.++.++++++++++.++++++
T Consensus 429 KSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~ 508 (1284)
T 3g5u_A 429 KSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDF 508 (1284)
T ss_dssp HHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888899999999999999999
Q ss_pred HHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchh
Q 041277 482 IRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTI 561 (1133)
Q Consensus 482 i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~ 561 (1133)
++++|+|++|.+||+|.+|||||||||+|||||+++|+|||||||||+||+++++.+++.+++..+|+|+|+||||++++
T Consensus 509 i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i 588 (1284)
T 3g5u_A 509 IMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTV 588 (1284)
T ss_dssp HHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHH
T ss_pred HHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888899999999999999
Q ss_pred hcCCEEEEEeCCeEEeecCcchhccccchhhHHHHHhhcCCCCCCCCcccccccccccCCCCCCcccccc--cccccccc
Q 041277 562 RNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQTTTPDDNNNATMHSLASKSSNMDMNSTSSRRL--SIVSLSSS 639 (1133)
Q Consensus 562 ~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 639 (1133)
..||+|+||++|+|+++|+|+|+++ .++.|++++..|....+.+...............+......... ........
T Consensus 589 ~~~d~i~vl~~G~i~~~g~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (1284)
T 3g5u_A 589 RNADVIAGFDGGVIVEQGNHDELMR-EKGIYFKLVMTQTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKS 667 (1284)
T ss_dssp TTCSEEEECSSSCCCCEECHHHHHH-TTSHHHHHHHHTC-----------------------------------------
T ss_pred HcCCEEEEEECCEEEEECCHHHHHh-CCCHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999998 68899999887654322111000000000000000000000000 00000000
Q ss_pred cCccccCCCCCCCcchhhcCCCchHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCh-hHHhhh
Q 041277 640 ANSFAQGRGASQSNEEDIKKLPVPSFRRLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDH-DEIKKK 718 (1133)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 718 (1133)
..............++..+......+++++++.+++|+.+.++++++++.+++.+.++++++.+++.+..... ......
T Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 747 (1284)
T 3g5u_A 668 ICGPHDQDRKLSTKEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQN 747 (1284)
T ss_dssp ----------------CCCCCSCCCTTHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHH
T ss_pred cccccccccccchhhhhhccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHH
Confidence 0000000000000000111122334566777788888888888889999999999999999888876654322 122233
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhh
Q 041277 719 TSIYAFCFLGLAVFTLVINIIQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGD 798 (1133)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~ 798 (1133)
...|..++++++++..++.+++.+++.+.+.++..++|.++|++++++|++|||++++++|++++|+++|++.++..++.
T Consensus 748 ~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~ 827 (1284)
T 3g5u_A 748 SNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGS 827 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778888888889999999999999999999999999999999999999987799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhh
Q 041277 799 RTALLVQTISAVTIAFTMGLFIAWRLALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFS 878 (1133)
Q Consensus 799 ~~~~~~~~~~~~i~~~~~~~~~~w~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~ 878 (1133)
.+..++..++.+++++++++.++|++++++++++|+++++.++..++.+....+..+..+.....+.|+++|+++||+|+
T Consensus 828 ~l~~~~~~~~~~~~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~ 907 (1284)
T 3g5u_A 828 RLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLT 907 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999988888888888888888889999999999999999999
Q ss_pred chHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 041277 879 SQHRILKMLEKAQQGPRRESIRQSWYAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADA 958 (1133)
Q Consensus 879 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~ 958 (1133)
.|+++.++|.+..+...+...+...+.+...++.+.+..+..++++|+|++++..|.++.+.++.++.++.....++..+
T Consensus 908 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 987 (1284)
T 3g5u_A 908 REQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQV 987 (1284)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988888999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcC
Q 041277 959 GSMTTDIAKGSDAVGSVFAVMDRYTKIEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQ 1038 (1133)
Q Consensus 959 ~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~ 1038 (1133)
..+.+++.++..+++|++++++.+++.++.......+++..|.|+|+||+|+||++++.++|+|+||+|+|||++|||||
T Consensus 988 ~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~ 1067 (1284)
T 3g5u_A 988 SSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGS 1067 (1284)
T ss_dssp TSSSCCSTHHHHHHHHHHHHHHSCCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECC
Confidence 98999999999999999999997765443222222233456899999999999866556799999999999999999999
Q ss_pred CCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcccccccccccccccHHHHhccCCCC-CCCHHHHHHHHHH
Q 041277 1039 SGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASD-EIDESEIVEAAKA 1117 (1133)
Q Consensus 1039 SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~-~~sdeei~~Al~~ 1117 (1133)
||||||||+++|+|+|+|++|+|++||+|+++++++++|++|++|||||.||++||||||.+|++. ..+++++++|++.
T Consensus 1068 sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~ 1147 (1284)
T 3g5u_A 1068 SGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKE 1147 (1284)
T ss_dssp SSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998763 4689999999999
Q ss_pred cchHHHHhhcccccCC
Q 041277 1118 ANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1118 a~l~dfI~~LP~G~dT 1133 (1133)
++++++++++|+||||
T Consensus 1148 ~~~~~~i~~l~~gldt 1163 (1284)
T 3g5u_A 1148 ANIHQFIDSLPDKYNT 1163 (1284)
T ss_dssp HTCHHHHSSTTTGGGC
T ss_pred hCcHHHHHhCcccccc
Confidence 9999999999999997
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-90 Score=910.60 Aligned_cols=576 Identities=37% Similarity=0.574 Sum_probs=497.0
Q ss_pred chHHHHHhhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 041277 19 GSFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACF 98 (1133)
Q Consensus 19 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (1133)
..+++++.+.++. +..++++++++++.++..|.++++++..++.+.... .........+.+++++++++..++.+
T Consensus 738 ~~~~~~~~~~~~~-~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~i~~~ 812 (1321)
T 4f4c_A 738 TNLFEILYHARPH-ALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFAGNP----ADFLSQGHFWALMFLVLAAAQGICSF 812 (1321)
T ss_dssp CCHHHHHHHTGGG-HHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHTSSCS----STTTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc----hhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777766554 556677888888889999999999999888764331 11223344566667777888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 041277 99 LEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAF 178 (1133)
Q Consensus 99 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (1133)
++.+++.+.+.++..++|.++|++++++|++|||...+++|+++||+++|++.+++.+...+..++..++.+++++++++
T Consensus 813 ~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~ 892 (1321)
T 4f4c_A 813 LMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAF 892 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhccCCCChHHHHhcchhhHHHHHHHHHHHHHHHHHHhhhHHHHeeeeh
Confidence 99999999999999999999999999999999985223899999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHH
Q 041277 179 LMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLG 258 (1133)
Q Consensus 179 ~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~ 258 (1133)
+++|++++++++++|+++++.+++.++..+...+.++..++....+.|+++|+++||+|++|+.+.++|.+..+...+..
T Consensus 893 ~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~ 972 (1321)
T 4f4c_A 893 FYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEA 972 (1321)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888888887777777777788889999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 259 LKQGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGT--VFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIM 335 (1133)
Q Consensus 259 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~ 335 (1133)
.+.....++..+ ...+..+..++++|+|++++..+..+.+. ++.++.++.....+++.+...+..+.++..|++|++
T Consensus 973 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~ 1052 (1321)
T 4f4c_A 973 IKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIF 1052 (1321)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888777 66677777888899999999888766554 344444444444566677778889999999999999
Q ss_pred HHhccCCCCCCCCCcccccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCC
Q 041277 336 EMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP 415 (1133)
Q Consensus 336 ~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~ 415 (1133)
++++.+++.+.... .....+..|.|+|+||+|+||++++.+||+|+||+|+|||++|||||||||||||+++|+|+|+|
T Consensus 1053 ~~l~~~~~~~~~~~-~~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p 1131 (1321)
T 4f4c_A 1053 GMLRKISKIDSLSL-AGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDT 1131 (1321)
T ss_dssp HHHHCCCSSCTTCC-CSBCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCC
T ss_pred HHhhCcccCCCccC-CCCCCCCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccC
Confidence 99998876543322 22233456899999999999987777899999999999999999999999999999999999999
Q ss_pred CccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCC--CCCCHHHHHHHHHHhchHHHHHhCCCcccccc
Q 041277 416 LGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGK--EDASMEEVIEAAKASNAHNFIRQLPQQYDTQV 493 (1133)
Q Consensus 416 ~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~--~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~ 493 (1133)
++|+|.+||+|+++++.+++|++|+||||||.||++||||||+||. ++.+++++++||+.+++++|+.++|+||||.|
T Consensus 1132 ~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~v 1211 (1321)
T 4f4c_A 1132 LGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRV 1211 (1321)
T ss_dssp SSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEE
T ss_pred CCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEe
Confidence 9999999999999999999999999999999999999999999994 46789999999999999999999999999999
Q ss_pred cCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCC
Q 041277 494 GERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDG 573 (1133)
Q Consensus 494 ~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G 573 (1133)
||+|.+|||||||||||||||++||+|||||||||+||+++|+.|++.|++..+|+|+|+||||++++++||+|+||++|
T Consensus 1212 ge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vld~G 1291 (1321)
T 4f4c_A 1212 GDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNG 1291 (1321)
T ss_dssp TTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEEEESSS
T ss_pred cCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeecCcchhccccchhhHHHHHhhcC
Q 041277 574 QVMETGSHDELIQAESGLYTSLVRLQTT 601 (1133)
Q Consensus 574 ~i~~~g~~~~l~~~~~~~~~~~~~~~~~ 601 (1133)
+|+|+|+|+||++ ++|.|++|++.|..
T Consensus 1292 ~IvE~Gth~eLl~-~~g~y~~L~~~Q~~ 1318 (1321)
T 4f4c_A 1292 TIIEKGTHTQLMS-EKGAYYKLTQKQMT 1318 (1321)
T ss_dssp SEEEEECHHHHHH-CC------------
T ss_pred EEEEECCHHHHHh-CCcHHHHHHHHHHh
Confidence 9999999999998 68999999998764
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-87 Score=816.91 Aligned_cols=568 Identities=25% Similarity=0.345 Sum_probs=507.5
Q ss_pred HHHHHhhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 041277 21 FRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACFLE 100 (1133)
Q Consensus 21 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (1133)
++++++|.+++ +..++++++++++.+++.++.|++++.++|...... + ...+..+.+++++++++..++.+++
T Consensus 11 ~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (587)
T 3qf4_A 11 SKTLARYLKPY-WIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARG--D----FSLVLKTGILMLIVALIGAVGGIGC 83 (587)
T ss_dssp CCCGGGGTGGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT--C----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--C----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566776665 444556667777777777888899999999764321 1 1223334444555566677888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 041277 101 GYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLM 180 (1133)
Q Consensus 101 ~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (1133)
.++..+.+.++..++|.++|+|++++|..+|++ . ++|++++|+++|++.+++.+...+..++..++.+++++++++++
T Consensus 84 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~-~-~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 161 (587)
T 3qf4_A 84 TVFASYASQNFGADLRRDLFRKVLSFSISNVNR-F-HTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSI 161 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH-S-CHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcc-C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999996 6 99999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHH
Q 041277 181 LWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGLK 260 (1133)
Q Consensus 181 ~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 260 (1133)
+|++++++++++|+++++..++.++.++..++.++..+++++.+.|.++|+++||+|++|+.+.++|.+..++.++...+
T Consensus 162 ~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~ 241 (587)
T 3qf4_A 162 NVKLSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIIS 241 (587)
T ss_dssp CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 041277 261 QGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEMIK 339 (1133)
Q Consensus 261 ~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~ 339 (1133)
.....+...+ ..++..+..++++|+|++++..|.+++|.++++..+......|+..+...+..++++.+|++|+.++++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~ 321 (587)
T 3qf4_A 242 AFSLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLN 321 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 8877777777 666777778888999999999999999999999999988889999999999999999999999999999
Q ss_pred cCCCCCCCCCcccccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccE
Q 041277 340 RVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGE 419 (1133)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~ 419 (1133)
.+++.+... .....+...+.|+++||+|+|++. ++++|+|+||++++||++||+||||||||||+++|+|+++|++|+
T Consensus 322 ~~~~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~ 399 (587)
T 3qf4_A 322 EKPAIEEAD-NALALPNVEGSVSFENVEFRYFEN-TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGR 399 (587)
T ss_dssp CCCSCCCCT-TCBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEE
T ss_pred CCCccCCCC-CccccCCCCCcEEEEEEEEEcCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcE
Confidence 776543211 111222345789999999999753 356999999999999999999999999999999999999999999
Q ss_pred EEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCC
Q 041277 420 IILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQ 499 (1133)
Q Consensus 420 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~ 499 (1133)
|.+||+|+++++.+++|++|+||||+|++|++||+|||.++.++.+++++.++++.++++++++.+|+|++|.+|++|.+
T Consensus 400 i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~ 479 (587)
T 3qf4_A 400 VEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRN 479 (587)
T ss_dssp EEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCS
T ss_pred EEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCC
Confidence 99999999999999999999999999999999999999999888889999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeec
Q 041277 500 MSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETG 579 (1133)
Q Consensus 500 LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g 579 (1133)
||||||||++||||++++|+|||||||||+||+++++.+++.+++..+|+|+|+||||++++..||+|++|++|+|+++|
T Consensus 480 LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g 559 (587)
T 3qf4_A 480 FSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFG 559 (587)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEE
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred CcchhccccchhhHHHHHhhc
Q 041277 580 SHDELIQAESGLYTSLVRLQT 600 (1133)
Q Consensus 580 ~~~~l~~~~~~~~~~~~~~~~ 600 (1133)
+|+|+++ .++.|++++..|.
T Consensus 560 ~~~el~~-~~~~~~~~~~~~~ 579 (587)
T 3qf4_A 560 THKELLE-HCKPYREIYESQF 579 (587)
T ss_dssp CHHHHHH-HCHHHHHHHHHHC
T ss_pred CHHHHHh-CCcHHHHHHHHHh
Confidence 9999998 5789999998775
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-86 Score=814.78 Aligned_cols=573 Identities=30% Similarity=0.413 Sum_probs=507.4
Q ss_pred HHHHHhhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCC-hhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 041277 21 FRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVP-IDVFTHNINKNTVHLLYLALGSWVACFL 99 (1133)
Q Consensus 21 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (1133)
+++++++.+++++ .++++++++++.++..++.|++++.++|.+....... ..........+...+++++++..++.++
T Consensus 2 ~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (578)
T 4a82_A 2 IKRYLQFVKPYKY-RIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFI 80 (578)
T ss_dssp HHHHHHHHGGGHH-HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677787766544 4456667777777777788899999999875431100 0000000122233344455667778889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 041277 100 EGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFL 179 (1133)
Q Consensus 100 ~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (1133)
+.++..+.+.++..++|.++|+|++++|++||++ . ++|++++|+++|++.+++.+...+..++.+++.++++++++++
T Consensus 81 ~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~-~-~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~ 158 (578)
T 4a82_A 81 RQYLAQWTSNKILYDIRKKLYNHLQALSARFYAN-N-QVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFF 158 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHT-S-CHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcC-C-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999996 6 9999999999999999999999888889999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHH
Q 041277 180 MLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGL 259 (1133)
Q Consensus 180 ~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 259 (1133)
++|++++++++++|+++++..++.++.++..++.++..+++.+.+.|.++|+++||+|++|+.+.++|++..++..+...
T Consensus 159 ~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 238 (578)
T 4a82_A 159 LDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRAL 238 (578)
T ss_dssp HCTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041277 260 KQGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEMI 338 (1133)
Q Consensus 260 ~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l 338 (1133)
+.....+...+ ..++..+..++++++|++++..|.+|+|.+++++.++.....|+..+...+..++++.+|++|+.+++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l 318 (578)
T 4a82_A 239 KHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLI 318 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888888777 67777777888899999999999999999999999988888999999999999999999999999999
Q ss_pred ccCCCCCCCCCcccccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCcc
Q 041277 339 KRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGG 418 (1133)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G 418 (1133)
+.+++.+... ...+.+...+.|+++||+|+|++. ++++|+|+||++++||++||+||||||||||+++|+|+++|++|
T Consensus 319 ~~~~~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G 396 (578)
T 4a82_A 319 DEDYDIKNGV-GAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSG 396 (578)
T ss_dssp TCCCSSCCCT-TCCCCCCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEE
T ss_pred cCCCcccCCC-CccccCCCCCeEEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCc
Confidence 8876543211 111222345789999999999753 34699999999999999999999999999999999999999999
Q ss_pred EEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCC
Q 041277 419 EIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGV 498 (1133)
Q Consensus 419 ~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~ 498 (1133)
+|.+||+|+++++.+++|++||||||+|++|++||+|||.+|.+..+++++.++++.++++++++++|+|++|.+|++|.
T Consensus 397 ~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~ 476 (578)
T 4a82_A 397 QILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGV 476 (578)
T ss_dssp EEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGT
T ss_pred EEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCC
Confidence 99999999999999999999999999999999999999999988888999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEee
Q 041277 499 QMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMET 578 (1133)
Q Consensus 499 ~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~ 578 (1133)
+||||||||++||||++++|+++|||||||+||+++++.+++.+++..+++|+|+||||+++++.||+|++|++|+++++
T Consensus 477 ~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~ 556 (578)
T 4a82_A 477 KLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVET 556 (578)
T ss_dssp TSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEE
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred cCcchhccccchhhHHHHHhh
Q 041277 579 GSHDELIQAESGLYTSLVRLQ 599 (1133)
Q Consensus 579 g~~~~l~~~~~~~~~~~~~~~ 599 (1133)
|+|+|+++ .++.|+++++.|
T Consensus 557 g~~~el~~-~~~~~~~~~~~q 576 (578)
T 4a82_A 557 GTHRELIA-KQGAYEHLYSIQ 576 (578)
T ss_dssp ECHHHHHH-TTSHHHHHHTTT
T ss_pred CCHHHHHh-CCcHHHHHHHhh
Confidence 99999998 578999998765
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-86 Score=816.56 Aligned_cols=569 Identities=29% Similarity=0.438 Sum_probs=512.1
Q ss_pred cchHHHHHhhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHH
Q 041277 18 NGSFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVAC 97 (1133)
Q Consensus 18 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (1133)
...+++++++.+++ +..++++++++++.++..++.|++++.++|.+.... + ...+..+.+.++++.++..++.
T Consensus 22 ~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~ 94 (598)
T 3qf4_B 22 TATLRRLLGYLRPH-TFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPR--R----FDLLPRYMLILGTIYALTSLLF 94 (598)
T ss_dssp HHHHHHHGGGTGGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT--C----GGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--C----HHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888765 445556677777777778888899999999865321 1 1223344455556667778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 041277 98 FLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVA 177 (1133)
Q Consensus 98 ~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (1133)
+++.++..+.+.++..++|.++|+|++++|++||++ . ++|++++|+++|++.+++.+...+..++.+++.++++++++
T Consensus 95 ~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~-~-~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l 172 (598)
T 3qf4_B 95 WLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDR-T-PHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMM 172 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTHHHHH-S-CHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcC-C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999996 6 99999999999999999999999999999999999999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHH
Q 041277 178 FLMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQL 257 (1133)
Q Consensus 178 ~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~ 257 (1133)
++++|++++++++++|+++++..++.++.++..++.++..+++++.+.|.++|+++||+|++|+.+.++|.+..++..+.
T Consensus 173 ~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~ 252 (598)
T 3qf4_B 173 FRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKV 252 (598)
T ss_dssp HHHCHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 258 GLKQGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIME 336 (1133)
Q Consensus 258 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~ 336 (1133)
..+.....+...+ ..++..+..++++++|++++..|.+++|.+++++.+......|+..+...+..++++.+|++|+.+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~ 332 (598)
T 3qf4_B 253 GTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFE 332 (598)
T ss_dssp HHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888777777 667777778888999999999999999999999888888888999999999999999999999999
Q ss_pred HhccCCCCCCCCCcccccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCC
Q 041277 337 MIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPL 416 (1133)
Q Consensus 337 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~ 416 (1133)
+++.+++.+.. ......+..+.|+++||+|+|++ ++++|+|+||++++||++||+||||||||||+++|+|+++|+
T Consensus 333 ~l~~~~~~~~~--~~~~~~~~~~~i~~~~v~~~y~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~ 408 (598)
T 3qf4_B 333 ILDLEEEKDDP--DAVELREVRGEIEFKNVWFSYDK--KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD 408 (598)
T ss_dssp HTTSCCCCCCS--SCCCCCSCCCCEEEEEEECCSSS--SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCS
T ss_pred HHcCCCCCCCC--CCCCCCCCCCeEEEEEEEEECCC--CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCC
Confidence 99877654321 11222334578999999999974 346999999999999999999999999999999999999999
Q ss_pred ccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCC
Q 041277 417 GGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGER 496 (1133)
Q Consensus 417 ~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~ 496 (1133)
+|+|.+||+|+++++.+++|++||||||+|++|++||+|||.+|.+..+++++.++++.++++++++.+|+|++|.+|++
T Consensus 409 ~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~ 488 (598)
T 3qf4_B 409 RGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDN 488 (598)
T ss_dssp EEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHH
T ss_pred CeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCC
Confidence 99999999999999999999999999999999999999999999887888899999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEE
Q 041277 497 GVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVM 576 (1133)
Q Consensus 497 g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~ 576 (1133)
|.+||||||||++||||++++|+|||||||||+||+++++.+++.+++..+|+|+|+||||+++++.||+|++|++|+++
T Consensus 489 g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~ 568 (598)
T 3qf4_B 489 GEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIV 568 (598)
T ss_dssp HTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEE
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999999988899999999999999999999999999999
Q ss_pred eecCcchhccccchhhHHHHHhhc
Q 041277 577 ETGSHDELIQAESGLYTSLVRLQT 600 (1133)
Q Consensus 577 ~~g~~~~l~~~~~~~~~~~~~~~~ 600 (1133)
++|+|+|+++ +++.|++++..|.
T Consensus 569 ~~g~~~~l~~-~~~~~~~~~~~~~ 591 (598)
T 3qf4_B 569 EMGKHDELIQ-KRGFYYELFTSQY 591 (598)
T ss_dssp ECSCHHHHHH-TTCHHHHHHHHHH
T ss_pred EECCHHHHHh-CCCHHHHHHHHHh
Confidence 9999999998 5889999998765
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-84 Score=792.83 Aligned_cols=568 Identities=29% Similarity=0.416 Sum_probs=503.9
Q ss_pred chHHHHHhhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 041277 19 GSFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACF 98 (1133)
Q Consensus 19 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (1133)
..+++++++.++.++ .++++++++++.++..++.|+++++++|.+.... + . .........+++++++..++.+
T Consensus 11 ~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~--~---~-~~~~~~~~~~~~~~~~~~~~~~ 83 (582)
T 3b5x_A 11 QTFKRLWTYIRLYKA-GLVVSTIALVINAAADTYMISLLKPLLDEGFGNA--E---S-NFLRILPFMILGLMFVRGLSGF 83 (582)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--c---h-HHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777665533 3455666667777777778889999999764321 1 0 1111122224455666778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 041277 99 LEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAF 178 (1133)
Q Consensus 99 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (1133)
+..++..+.+.++..++|.++|+|++++|++||++ . ++|++++|+++|++.+++.+...+..++.+++.+++++++++
T Consensus 84 ~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~-~-~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~ 161 (582)
T 3b5x_A 84 ASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQ-E-STGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMF 161 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCC-C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999996 6 899999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHH
Q 041277 179 LMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLG 258 (1133)
Q Consensus 179 ~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~ 258 (1133)
+++|++++++++++|+++++..++.++.++..++.++..+++.+.+.|.++|+++||+|++|+.+.++|.+..++..+..
T Consensus 162 ~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~ 241 (582)
T 3b5x_A 162 WNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQT 241 (582)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 259 LKQGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEM 337 (1133)
Q Consensus 259 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~ 337 (1133)
.+.....+...+ ..++..+..++++|+|++++..|.+|+|.+++++.++.....|+..+...+..++++..+++|+.++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~ 321 (582)
T 3b5x_A 242 MKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGL 321 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888888777 7777777788889999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCCCcccccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCc
Q 041277 338 IKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLG 417 (1133)
Q Consensus 338 l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~ 417 (1133)
++.+++.+. . ..+.+...+.|+++||+|+|+++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++
T Consensus 322 l~~~~~~~~-~--~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~ 397 (582)
T 3b5x_A 322 MDLETERDN-G--KYEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDS 397 (582)
T ss_pred HcCCCcCCC-C--CCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 987654321 1 11112234679999999999743 2459999999999999999999999999999999999999999
Q ss_pred cEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCC-CCCCHHHHHHHHHHhchHHHHHhCCCcccccccCC
Q 041277 418 GEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGK-EDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGER 496 (1133)
Q Consensus 418 G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~ 496 (1133)
|+|.+||+|+.+.+.+++|++||||||+|++|++||+|||.++. ++.++++++++++.++++++++++|+|+||.+|++
T Consensus 398 G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~ 477 (582)
T 3b5x_A 398 GSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGEN 477 (582)
T ss_pred CEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCC
Confidence 99999999999999999999999999999999999999999987 66788899999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEE
Q 041277 497 GVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVM 576 (1133)
Q Consensus 497 g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~ 576 (1133)
|.+||||||||++||||++++|++||||||||+||+++++.+.+.+++..+|+|+|+||||+++++.||+|++|++|+++
T Consensus 478 ~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~ 557 (582)
T 3b5x_A 478 GTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEII 557 (582)
T ss_pred CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999999987899999999999999999999999999999
Q ss_pred eecCcchhccccchhhHHHHHhhc
Q 041277 577 ETGSHDELIQAESGLYTSLVRLQT 600 (1133)
Q Consensus 577 ~~g~~~~l~~~~~~~~~~~~~~~~ 600 (1133)
++|+|+|+++ .++.|+++++.|.
T Consensus 558 ~~g~~~~l~~-~~~~~~~~~~~q~ 580 (582)
T 3b5x_A 558 ERGRHADLLA-QDGAYAQLHRIQF 580 (582)
T ss_pred EECCHHHHHh-CCcHHHHHHHHhh
Confidence 9999999987 5789999998763
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-84 Score=792.01 Aligned_cols=568 Identities=31% Similarity=0.469 Sum_probs=503.8
Q ss_pred chHHHHHhhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 041277 19 GSFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACF 98 (1133)
Q Consensus 19 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (1133)
..+++++++.++.++ .++++++++++.++..++.|++++.++|.+... . .. .........++++.++..++.+
T Consensus 11 ~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~---~--~~-~~~~~~~~~~~~~~~~~~~~~~ 83 (582)
T 3b60_A 11 QTFRRLWPTIAPFKA-GLIVAGIALILNAASDTFMLSLLKPLLDDGFGK---T--DR-SVLLWMPLVVIGLMILRGITSY 83 (582)
T ss_dssp HHHHHHHHHHGGGHH-HHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTS---T--TH-HHHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---C--ch-HHHHHHHHHHHHHHHHHHHHHH
Confidence 446677777765543 445566666777777777888999999975432 1 11 1111122224445566778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 041277 99 LEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAF 178 (1133)
Q Consensus 99 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (1133)
++.++..+.+.++..++|.++|+|++++|++||++ . ++|++++|+++|++.+++.+...+..++..++.+++++++++
T Consensus 84 ~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~-~-~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~ 161 (582)
T 3b60_A 84 ISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDK-Q-STGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMF 161 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCSTHHHH-S-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCC-C-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999996 6 899999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHH
Q 041277 179 LMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLG 258 (1133)
Q Consensus 179 ~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~ 258 (1133)
+++|++++++++++|+++++..++.++.++..++.++..+++.+.+.|.++|+++||+|++|+.+.++|.+..++..+..
T Consensus 162 ~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~ 241 (582)
T 3b60_A 162 YYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQG 241 (582)
T ss_dssp HHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 259 LKQGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEM 337 (1133)
Q Consensus 259 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~ 337 (1133)
.+.....+...+ ..++..+..++++|+|++++..|.+|+|.+++++.+......|+..+...+..++++..+++|+.++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~ 321 (582)
T 3b60_A 242 MKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAI 321 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888888777 6777777778889999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCCCcccccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCc
Q 041277 338 IKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLG 417 (1133)
Q Consensus 338 l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~ 417 (1133)
++.+++.+. . ..+.+...+.|+++||+|+|+++ ++++|+|+||++++||++||+||||||||||+++|+|+++|++
T Consensus 322 l~~~~~~~~-~--~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~ 397 (582)
T 3b60_A 322 LDSEQEKDE-G--KRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDE 397 (582)
T ss_dssp HHSCCSCCC-C--CBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSE
T ss_pred HcCCCCccC-C--CCCCCCCCCcEEEEEEEEEcCCC-CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCC
Confidence 987655321 1 11112234679999999999742 2459999999999999999999999999999999999999999
Q ss_pred cEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCC-CCCCHHHHHHHHHHhchHHHHHhCCCcccccccCC
Q 041277 418 GEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGK-EDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGER 496 (1133)
Q Consensus 418 G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~ 496 (1133)
|+|.+||+|+++++.+++|++||||||+|++|++||+|||.++. ++.++++++++++.++++++++++|+|++|.+|++
T Consensus 398 G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~ 477 (582)
T 3b60_A 398 GHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGEN 477 (582)
T ss_dssp EEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTT
T ss_pred CeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCC
Confidence 99999999999999999999999999999999999999999987 66788999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEE
Q 041277 497 GVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVM 576 (1133)
Q Consensus 497 g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~ 576 (1133)
|.+||||||||++||||++++|+++|||||||+||+++++.+++.+++..+|+|+|+||||+++++.||+|++|++|+++
T Consensus 478 ~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~ 557 (582)
T 3b60_A 478 GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIV 557 (582)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEE
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999999988899999999999999999999999999999
Q ss_pred eecCcchhccccchhhHHHHHhhc
Q 041277 577 ETGSHDELIQAESGLYTSLVRLQT 600 (1133)
Q Consensus 577 ~~g~~~~l~~~~~~~~~~~~~~~~ 600 (1133)
++|+|+|+++ .++.|+++++.|.
T Consensus 558 ~~g~~~~l~~-~~~~~~~~~~~q~ 580 (582)
T 3b60_A 558 ERGTHSELLA-QHGVYAQLHKMQF 580 (582)
T ss_dssp EEECHHHHHH-HTSSHHHHHHHTC
T ss_pred EecCHHHHHH-cCCHHHHHHHHhc
Confidence 9999999987 5789999998763
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-80 Score=815.02 Aligned_cols=581 Identities=37% Similarity=0.593 Sum_probs=511.9
Q ss_pred chHHHHHhhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 041277 19 GSFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACF 98 (1133)
Q Consensus 19 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (1133)
..+++++++.++. +..++++++++++.+...|.++++++.+++.+.... ...........+..++++++++..++.+
T Consensus 691 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~~ 767 (1284)
T 3g5u_A 691 ASFWRILKLNSTE-WPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGG--PPETQRQNSNLFSLLFLILGIISFITFF 767 (1284)
T ss_dssp CCTTHHHHHHHHT-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC--STTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--cchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466677765543 344566777788888889999999999998765331 1111122334455566677777888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 041277 99 LEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAF 178 (1133)
Q Consensus 99 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (1133)
++.+++.+.++++..++|.++|++++++|++|||...+++|++++|+++|++.+++.++..+..++..+..+++++++++
T Consensus 768 ~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~ 847 (1284)
T 3g5u_A 768 LQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISL 847 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999995223899999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHH
Q 041277 179 LMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLG 258 (1133)
Q Consensus 179 ~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~ 258 (1133)
.++|++++++++++|+++++..+..+..++...+.++..++....+.|+++|+++||+|++|+.+.++|.+..+...+..
T Consensus 848 ~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~ 927 (1284)
T 3g5u_A 848 IYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNA 927 (1284)
T ss_dssp SSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998888888889999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 259 LKQGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEM 337 (1133)
Q Consensus 259 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~ 337 (1133)
.+.....++..+ ...+.++..++++|+|++++..|.++.+.++.++.++.....+++.+......+.++..+++|+.++
T Consensus 928 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~ 1007 (1284)
T 3g5u_A 928 MKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRI 1007 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888877 7778888889999999999999999999999888888777778777777777888999999999999
Q ss_pred hccCCCCCCCCCcccccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCc
Q 041277 338 IKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLG 417 (1133)
Q Consensus 338 l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~ 417 (1133)
++.+|+.+........+....+.|+++||+|+|+++++.++|+|+||+|++||++|||||||||||||+++|+|+|+|++
T Consensus 1008 l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~ 1087 (1284)
T 3g5u_A 1008 IEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMA 1087 (1284)
T ss_dssp HHSCCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSE
T ss_pred HcCCCcccccccccccccCCCCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCC
Confidence 99877654322222223334678999999999986544579999999999999999999999999999999999999999
Q ss_pred cEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCC--CCCHHHHHHHHHHhchHHHHHhCCCcccccccC
Q 041277 418 GEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKE--DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGE 495 (1133)
Q Consensus 418 G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~ 495 (1133)
|+|.+||+|+++++.+++|++||||||||.+|++||+|||.++.+ ..++++++++++.++++++++++|+||||.+||
T Consensus 1088 G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge 1167 (1284)
T 3g5u_A 1088 GSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGD 1167 (1284)
T ss_dssp EEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCST
T ss_pred CEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCC
Confidence 999999999999999999999999999999999999999999875 367899999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeE
Q 041277 496 RGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQV 575 (1133)
Q Consensus 496 ~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i 575 (1133)
+|.+|||||||||+|||||+++|+|||||||||+||+++++.+++.|++..+|+|+|+||||++++..||||+||++|+|
T Consensus 1168 ~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~vl~~G~i 1247 (1284)
T 3g5u_A 1168 KGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKV 1247 (1284)
T ss_dssp TSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGSCSEEEEEETBEE
T ss_pred CCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHcCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999999988889999999999999999999999999999
Q ss_pred EeecCcchhccccchhhHHHHHhhcCCC
Q 041277 576 METGSHDELIQAESGLYTSLVRLQTTTP 603 (1133)
Q Consensus 576 ~~~g~~~~l~~~~~~~~~~~~~~~~~~~ 603 (1133)
+++|+|+|+++ +++.|+++++.|....
T Consensus 1248 ~~~g~~~~l~~-~~g~y~~l~~~q~~~~ 1274 (1284)
T 3g5u_A 1248 KEHGTHQQLLA-QKGIYFSMVSVQAGAK 1274 (1284)
T ss_dssp EEEECHHHHHH-SCSHHHHHHHHHC---
T ss_pred EEECCHHHHHh-CCCHHHHHHHHHhhcc
Confidence 99999999998 6899999999886544
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-60 Score=580.76 Aligned_cols=460 Identities=24% Similarity=0.361 Sum_probs=409.9
Q ss_pred HHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 666 RRLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINIIQHYNFA 745 (1133)
Q Consensus 666 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 (1133)
++++++.+++|+.+.+++++.++.+++.+..|++++.+++....... ......+.+.++++.++..++.+++.++..
T Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (587)
T 3qf4_A 12 KTLARYLKPYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGD---FSLVLKTGILMLIVALIGAVGGIGCTVFAS 88 (587)
T ss_dssp CCGGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566788999999888888899999999999999999986543211 112233444555666777788888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 041277 746 YMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWRLA 825 (1133)
Q Consensus 746 ~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~w~l~ 825 (1133)
+.+.++..++|.++|+|++++|++||+ ++++|++++|+++|++.+++.+...+..++..++.+++++++++.++|+++
T Consensus 89 ~~~~~~~~~lr~~l~~~ll~~~~~~~~--~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~ 166 (587)
T 3qf4_A 89 YASQNFGADLRRDLFRKVLSFSISNVN--RFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLS 166 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHHHH--HSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHc--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998 579999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHHHHHHH
Q 041277 826 LVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSWYA 905 (1133)
Q Consensus 826 lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 905 (1133)
+++++++|++++..++..+..++..++.++..++.++.+.|+++|+++||+|+.|+.+.++|.+..++..+...+..+..
T Consensus 167 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (587)
T 3qf4_A 167 SVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLI 246 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888888888888888999999999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCCC
Q 041277 906 GIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRYTKI 985 (1133)
Q Consensus 906 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~ 985 (1133)
....++...+..+..++++|+|++++..|.+++|.+++++.+......|+..+...+..+.++..+++|+.++++.+++.
T Consensus 247 ~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~ 326 (587)
T 3qf4_A 247 VFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAI 326 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 88888888888888999999999999999999999999999999999999999999999999999999999999876543
Q ss_pred CCCCCCCCCCCCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECC
Q 041277 986 EPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDD 1065 (1133)
Q Consensus 986 ~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG 1065 (1133)
++.. .....++..|.|+|+||+|+|+++ +.++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||
T Consensus 327 ~~~~-~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g 404 (587)
T 3qf4_A 327 EEAD-NALALPNVEGSVSFENVEFRYFEN-TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDE 404 (587)
T ss_dssp CCCT-TCBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESS
T ss_pred CCCC-CccccCCCCCcEEEEEEEEEcCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECC
Confidence 3211 111122346899999999999743 45699999999999999999999999999999999999999999999999
Q ss_pred cccCCCChhHHhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1066 RDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1066 ~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
+|+++++.+++|++|++|||||.||++||+|||++|.+ ..+++++++|++.++++|+++++|+||||
T Consensus 405 ~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~~ 471 (587)
T 3qf4_A 405 LDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGRE-DATDDEIVEAAKIAQIHDFIISLPEGYDS 471 (587)
T ss_dssp SBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCS-SCCHHHHHHHHHHTTCHHHHHTSSSGGGC
T ss_pred EEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCC-CCCHHHHHHHHHHhCcHHHHHhcccchhh
Confidence 99999999999999999999999999999999999976 46899999999999999999999999987
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-60 Score=579.31 Aligned_cols=462 Identities=23% Similarity=0.384 Sum_probs=415.7
Q ss_pred chHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 041277 662 VPSFRRLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINIIQH 741 (1133)
Q Consensus 662 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (1133)
...+++++++.+++++.+.++++++++.+++.+..|++++.+++....... ......+.++++++.++..++.+++.
T Consensus 22 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (598)
T 3qf4_B 22 TATLRRLLGYLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRR---FDLLPRYMLILGTIYALTSLLFWLQG 98 (598)
T ss_dssp HHHHHHHGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC---GGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778888999999999889889999999999999999999887643211 12233455666677778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 041277 742 YNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIA 821 (1133)
Q Consensus 742 ~~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 821 (1133)
++..+.+.++..++|.++|+|++++|++||+ ++++|++++|+++|++.+++.+...+..++..++.+++++++++.++
T Consensus 99 ~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~--~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 176 (598)
T 3qf4_B 99 KIMLTLSQDVVFRLRKELFEKLQRVPVGFFD--RTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVN 176 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCTHHHH--HSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 57999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHHH
Q 041277 822 WRLALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQ 901 (1133)
Q Consensus 822 w~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~ 901 (1133)
|++++++++++|+.+++..+..+..++..++.++..++..+.+.|+++|+++||+|+.|+++.++|++..++..+...+.
T Consensus 177 ~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 256 (598)
T 3qf4_B 177 VILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKA 256 (598)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888888888888888999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcc
Q 041277 902 SWYAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDR 981 (1133)
Q Consensus 902 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~ 981 (1133)
.++.+...++...+..+..++++++|++++..|.+++|.+++++.+......|+..+...+..++.+..+++|+.++++.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~ 336 (598)
T 3qf4_B 257 QIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDL 336 (598)
T ss_dssp HHHTTTHHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 88888888888888888899999999999999999999999999999888999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeE
Q 041277 982 YTKIEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061 (1133)
Q Consensus 982 ~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I 1061 (1133)
+++.+. +.....++..|+|+|+||+|+|++ +.++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|
T Consensus 337 ~~~~~~--~~~~~~~~~~~~i~~~~v~~~y~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i 412 (598)
T 3qf4_B 337 EEEKDD--PDAVELREVRGEIEFKNVWFSYDK--KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQI 412 (598)
T ss_dssp CCCCCC--SSCCCCCSCCCCEEEEEEECCSSS--SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEE
T ss_pred CCCCCC--CCCCCCCCCCCeEEEEEEEEECCC--CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEE
Confidence 654321 111122334689999999999963 3469999999999999999999999999999999999999999999
Q ss_pred EECCcccCCCChhHHhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1062 KIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1062 ~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
++||+|+++++.+++|++|++|||||.||++||+|||.+|++ ..+++++++|++.++++++++++|+||||
T Consensus 413 ~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~t 483 (598)
T 3qf4_B 413 LVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNP-GATDEEIKEAAKLTHSDHFIKHLPEGYET 483 (598)
T ss_dssp EETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSST-TCCTTHHHHHTTTTTCHHHHHTSTTGGGC
T ss_pred EECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCC-CCCHHHHHHHHHHhCCHHHHHhccccccc
Confidence 999999999999999999999999999999999999999976 46788999999999999999999999987
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-62 Score=543.37 Aligned_cols=278 Identities=42% Similarity=0.670 Sum_probs=251.3
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCCCcccccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCC
Q 041277 320 NLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSG 399 (1133)
Q Consensus 320 ~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sG 399 (1133)
....++++.++++|++++++.+++..... .........+.|+++||+|+|++. .++|+|+||+|++||++|||||||
T Consensus 14 ~~~~~~~~~~~~~ri~~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~vs~~y~~~--~~vL~~isl~i~~Ge~vaivG~sG 90 (306)
T 3nh6_A 14 LVPRGSHMFIDMENMFDLLKEETEVKDLP-GAGPLRFQKGRIEFENVHFSYADG--RETLQDVSFTVMPGQTLALVGPSG 90 (306)
T ss_dssp -----CCTTCCHHHHHHHHHHHHSCCCCT-TCBCCCCSSCCEEEEEEEEESSTT--CEEEEEEEEEECTTCEEEEESSSC
T ss_pred cchhHHHHHHHHHHHHHHHhCCccccccc-cccccCCCCCeEEEEEEEEEcCCC--CceeeeeeEEEcCCCEEEEECCCC
Confidence 45677888999999999998765433211 111122335689999999999743 459999999999999999999999
Q ss_pred CcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchH
Q 041277 400 SGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAH 479 (1133)
Q Consensus 400 sGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~ 479 (1133)
||||||+++|+|+|+|++|+|.+||+++.+++..++|++||||||+|++|++||+|||.+|.+..+.++++++++.++++
T Consensus 91 sGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~ 170 (306)
T 3nh6_A 91 AGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIH 170 (306)
T ss_dssp HHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCH
T ss_pred chHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcH
Confidence 99999999999999999999999999999999999999999999999999999999999998888899999999999999
Q ss_pred HHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcc
Q 041277 480 NFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLS 559 (1133)
Q Consensus 480 ~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~ 559 (1133)
+++..+|+|++|.+|++|.+|||||||||+|||||+++|+|||||||||+||+.+++.|++.|+++.+++|+|+||||++
T Consensus 171 ~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~ 250 (306)
T 3nh6_A 171 DAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLS 250 (306)
T ss_dssp HHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHH
T ss_pred HHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888999999999999
Q ss_pred hhhcCCEEEEEeCCeEEeecCcchhccccchhhHHHHHhhcC
Q 041277 560 TIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQTT 601 (1133)
Q Consensus 560 ~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~ 601 (1133)
++..||+|++|++|+|++.|+|+++++ .++.|++++..|..
T Consensus 251 ~~~~aD~i~vl~~G~iv~~G~~~el~~-~~~~y~~l~~~q~~ 291 (306)
T 3nh6_A 251 TVVNADQILVIKDGCIVERGRHEALLS-RGGVYADMWQLQQG 291 (306)
T ss_dssp HHHTCSEEEEEETTEEEEEECHHHHHH-HTSHHHHHHHHHHC
T ss_pred HHHcCCEEEEEECCEEEEECCHHHHHh-cChHHHHHHHHHHh
Confidence 999999999999999999999999998 68999999988764
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-60 Score=576.25 Aligned_cols=464 Identities=23% Similarity=0.347 Sum_probs=411.1
Q ss_pred HHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhh----hHHHHHHHHHHHHHHHHHHHH
Q 041277 665 FRRLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKT----SIYAFCFLGLAVFTLVINIIQ 740 (1133)
Q Consensus 665 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 740 (1133)
+++++++.+++++.+.++++++++.+++.+..|++++.+++.............. ..+...++++.++..++.+++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (578)
T 4a82_A 2 IKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIR 81 (578)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788899999999888888888888888999999998876532210001111 223344455566677888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 041277 741 HYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFI 820 (1133)
Q Consensus 741 ~~~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 820 (1133)
.++..+.+.++..++|.++|+|++++|++||+ ++++|++++|+++|++.+++.+...+..++..++.+++++++++.+
T Consensus 82 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~--~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 159 (578)
T 4a82_A 82 QYLAQWTSNKILYDIRKKLYNHLQALSARFYA--NNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFL 159 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH--TSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHc--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 5799999999999999999999888888888888999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHH
Q 041277 821 AWRLALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIR 900 (1133)
Q Consensus 821 ~w~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~ 900 (1133)
+|++++++++++|+++++..+..+..++..++.++..++..+.+.|+++|+++||+|+.|+.+.++|++..++..+...+
T Consensus 160 ~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 239 (578)
T 4a82_A 160 DVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK 239 (578)
T ss_dssp CTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888888888888888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhc
Q 041277 901 QSWYAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMD 980 (1133)
Q Consensus 901 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~ 980 (1133)
..++.+...++...+..+..++++++|++++..|.+++|.+++++.+......|+..+...+..+.++..+++|+.++++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~ 319 (578)
T 4a82_A 240 HTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLID 319 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999988999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCCCCCCCCCCCCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCe
Q 041277 981 RYTKIEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGD 1060 (1133)
Q Consensus 981 ~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~ 1060 (1133)
.+++.++.. ...+.++..|+|+++||+|+|+++ +.++|+|+||+|++||++|||||||||||||+++|.|+|+|++|+
T Consensus 320 ~~~~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~ 397 (578)
T 4a82_A 320 EDYDIKNGV-GAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQ 397 (578)
T ss_dssp CCCSSCCCT-TCCCCCCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEE
T ss_pred CCCcccCCC-CccccCCCCCeEEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcE
Confidence 765533211 111122346899999999999743 456999999999999999999999999999999999999999999
Q ss_pred EEECCcccCCCChhHHhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1061 VKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1061 I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
|++||+|+++++.+++|++|++|||||.||++||+|||.+|.| ..+++++++|++.++++|+++++|+||||
T Consensus 398 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~-~~~~~~~~~~~~~~~~~~~~~~lp~g~~t 469 (578)
T 4a82_A 398 ILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRP-TATDEEVVEAAKMANAHDFIMNLPQGYDT 469 (578)
T ss_dssp EEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCS-SCCHHHHHHHHHHTTCHHHHHTSTTGGGC
T ss_pred EEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCC-CCCHHHHHHHHHHhCcHHHHHhCcchhhh
Confidence 9999999999999999999999999999999999999999976 46889999999999999999999999987
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-58 Score=561.73 Aligned_cols=461 Identities=25% Similarity=0.398 Sum_probs=407.9
Q ss_pred hHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 041277 663 PSFRRLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINIIQHY 742 (1133)
Q Consensus 663 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (1133)
..+++++++.+++++.+.+++++.++.+++.++.+++++.+++....... .....+....++++.++..++.+++.+
T Consensus 11 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (582)
T 3b5x_A 11 QTFKRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAE---SNFLRILPFMILGLMFVRGLSGFASSY 87 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc---hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777778888888888888888888888889999888876542211 111111223355566777888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhH
Q 041277 743 NFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAW 822 (1133)
Q Consensus 743 ~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~w 822 (1133)
+..+.+.++..++|.++|+|++++|++||+ ++++|++++|+++|++.+++.+...+..++..++.++++++++++++|
T Consensus 88 ~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~--~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~ 165 (582)
T 3b5x_A 88 CLSWVSGNVVMQMRRRLFNHFMHMPVRFFD--QESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSW 165 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999999999999999998 578999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHHHH
Q 041277 823 RLALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQS 902 (1133)
Q Consensus 823 ~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~ 902 (1133)
++++++++++|+.+++..+..+..++..++.++..++..+.+.|.++|+++||+|+.|+++.++|++..++..+...+..
T Consensus 166 ~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 245 (582)
T 3b5x_A 166 QLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLV 245 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888888888888888888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccC
Q 041277 903 WYAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRY 982 (1133)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~ 982 (1133)
+......++...+..+..++++++|++++..|.+++|.+++++.+......|+..+...+..++++..+++|+.++++.+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~ 325 (582)
T 3b5x_A 246 SAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLE 325 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred CCCCCCCCCCCCCCCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEE
Q 041277 983 TKIEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVK 1062 (1133)
Q Consensus 983 ~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~ 1062 (1133)
++.++ ...+.++..|.|+|+||+|+|+++ +.++|+|+||+|++||++|||||||||||||+++|.|+|+|++|+|+
T Consensus 326 ~~~~~---~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~ 401 (582)
T 3b5x_A 326 TERDN---GKYEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSIC 401 (582)
T ss_pred CcCCC---CCCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEE
Confidence 44321 111112235789999999999742 24699999999999999999999999999999999999999999999
Q ss_pred ECCcccCCCChhHHhhcccccccccccccccHHHHhccCC-CCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1063 IDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGA-SDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1063 IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~-~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
+||+|+++++.+++|++|++|||||.+|++||+|||.+|. + ..+++++++|++.++++++++++|+||||
T Consensus 402 ~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~p~g~~t 472 (582)
T 3b5x_A 402 LDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEG-EYTREQIEQAARQAHAMEFIENMPQGLDT 472 (582)
T ss_pred ECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCC-CCCHHHHHHHHHHCCCHHHHHhCcccccc
Confidence 9999999999999999999999999999999999999986 4 46889999999999999999999999997
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-58 Score=561.00 Aligned_cols=462 Identities=26% Similarity=0.422 Sum_probs=407.8
Q ss_pred hHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 041277 663 PSFRRLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINIIQHY 742 (1133)
Q Consensus 663 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (1133)
..+++++++.+++++.+.+++++.++.+++.+..+++++.+++....... . ....+....++++.++..++.+++.+
T Consensus 11 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (582)
T 3b60_A 11 QTFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTD--R-SVLLWMPLVVIGLMILRGITSYISSY 87 (582)
T ss_dssp HHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTT--H-HHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--h-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778888888888888888888888888888888888875432111 1 11111223355566777888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhH
Q 041277 743 NFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAW 822 (1133)
Q Consensus 743 ~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~w 822 (1133)
+..+.+.++..++|.++|+|++++|++||+ ++++|++++|+++|++.+++.+...+..++..++.+++.+++++.++|
T Consensus 88 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~--~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~ 165 (582)
T 3b60_A 88 CISWVSGKVVMTMRRRLFGHMMGMPVAFFD--KQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSW 165 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCSTHHH--HSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999999999999999998 478999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHHHH
Q 041277 823 RLALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQS 902 (1133)
Q Consensus 823 ~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~ 902 (1133)
++++++++++|+++++..+..+..++..++.++..++..+.+.|+++|+++||+|+.|+++.++|.+..++..+...+..
T Consensus 166 ~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 245 (582)
T 3b60_A 166 QLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMV 245 (582)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888888888888888888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccC
Q 041277 903 WYAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRY 982 (1133)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~ 982 (1133)
+......++..++..+..++++|+|++++..|.+++|.+++++.+......|+..+...+..++++..+++|+.++++.+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~ 325 (582)
T 3b60_A 246 SASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSE 325 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999998888899999999999999999999999999999999999999999999999999999999999865
Q ss_pred CCCCCCCCCCCCCCCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEE
Q 041277 983 TKIEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVK 1062 (1133)
Q Consensus 983 ~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~ 1062 (1133)
++.++ ...+.++..|.|+|+||+|+|+++ +.++|+|+||+|++||++|||||||||||||+++|.|+|+|++|+|+
T Consensus 326 ~~~~~---~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~ 401 (582)
T 3b60_A 326 QEKDE---GKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL 401 (582)
T ss_dssp CSCCC---CCBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEE
T ss_pred CCccC---CCCCCCCCCCcEEEEEEEEEcCCC-CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEE
Confidence 54321 111112235789999999999732 24699999999999999999999999999999999999999999999
Q ss_pred ECCcccCCCChhHHhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1063 IDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1063 IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
+||+|+++++.+++|++|++|||||.+|++||+|||.+|.....+++++++|++.++++++++++|+||||
T Consensus 402 ~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~ 472 (582)
T 3b60_A 402 MDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDT 472 (582)
T ss_dssp ETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGS
T ss_pred ECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccc
Confidence 99999999999999999999999999999999999999862246889999999999999999999999987
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-52 Score=455.21 Aligned_cols=240 Identities=46% Similarity=0.778 Sum_probs=222.5
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhh
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 438 (1133)
..|+++||+|+|++. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|++
T Consensus 6 ~~~~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~ 84 (247)
T 2ff7_A 6 HDITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84 (247)
T ss_dssp EEEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred CceeEEEEEEEeCCC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhc
Confidence 469999999999421 2359999999999999999999999999999999999999999999999999998888888999
Q ss_pred ceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCC
Q 041277 439 MGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAP 518 (1133)
Q Consensus 439 i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~ 518 (1133)
||||||+|.+|+.||+||+.++.+..+.+++.++++.+++.++++++|.|+++.+++++.+||||||||++|||||+++|
T Consensus 85 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p 164 (247)
T 2ff7_A 85 VGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNP 164 (247)
T ss_dssp EEEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCC
T ss_pred EEEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999986556677888999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhccccchhhHHHHHh
Q 041277 519 RILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRL 598 (1133)
Q Consensus 519 ~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 598 (1133)
++||||||||+||+.+++.+.+.|+++.+|+|+|+|||+++.+..||+|++|++|++++.|+++++.+.+.+.|.+++..
T Consensus 165 ~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~l~~~ 244 (247)
T 2ff7_A 165 KILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 244 (247)
T ss_dssp SEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTSTTCHHHHHHHH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCchHHHHHHHh
Confidence 99999999999999999999999998877999999999999988899999999999999999999987436788888765
Q ss_pred h
Q 041277 599 Q 599 (1133)
Q Consensus 599 ~ 599 (1133)
+
T Consensus 245 ~ 245 (247)
T 2ff7_A 245 Q 245 (247)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-52 Score=452.70 Aligned_cols=240 Identities=45% Similarity=0.756 Sum_probs=221.7
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhh
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 438 (1133)
+.|+++||+|+|++...+++|+|+||+|++||+++|+||||||||||+++|+|+++| +|+|.++|+++.+.+...+|++
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 469999999999753224599999999999999999999999999999999999987 8999999999988888888999
Q ss_pred ceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCC
Q 041277 439 MGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAP 518 (1133)
Q Consensus 439 i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~ 518 (1133)
|+||||+|.+|+.|++||+.++......+++.++++.+++.+++..+|++++|.+++++.+||||||||++|||||+++|
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 174 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDP 174 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999986555677888899999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhccccchhhHHHHHh
Q 041277 519 RILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRL 598 (1133)
Q Consensus 519 ~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 598 (1133)
++||||||||+||+.+++.+.+.|+++.+++|+|+|||+++.+..||+|++|++|++++.|+++++++ ..+.|.+++..
T Consensus 175 ~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~-~~~~~~~~~~~ 253 (260)
T 2ghi_A 175 KIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLK-LNGEYAEMWNM 253 (260)
T ss_dssp SEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHH-HTSHHHHHHHH
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHh-cChHHHHHHHh
Confidence 99999999999999999999999998877899999999999988899999999999999999999987 46788888876
Q ss_pred hc
Q 041277 599 QT 600 (1133)
Q Consensus 599 ~~ 600 (1133)
+.
T Consensus 254 ~~ 255 (260)
T 2ghi_A 254 QS 255 (260)
T ss_dssp HH
T ss_pred hh
Confidence 64
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-51 Score=451.57 Aligned_cols=241 Identities=44% Similarity=0.718 Sum_probs=218.7
Q ss_pred cccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhh
Q 041277 358 LGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRS 437 (1133)
Q Consensus 358 ~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~ 437 (1133)
.+.|+++||+|+|++..+.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|+
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhc
Confidence 35699999999997521245999999999999999999999999999999999999999999999999998888888889
Q ss_pred hceEEecCCCCccccHHHHHhcCCCCCCH-HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhh
Q 041277 438 QMGLVSQEPALFATSIKENILFGKEDASM-EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIK 516 (1133)
Q Consensus 438 ~i~~v~Q~~~l~~~ti~eni~~~~~~~~~-~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~ 516 (1133)
+||||||+|.+|+.||+|||.++.+.... +++.++++..++.++++.+|+|+++.+++.+.+||||||||++|||||++
T Consensus 94 ~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~ 173 (271)
T 2ixe_A 94 QVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIR 173 (271)
T ss_dssp HEEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTT
T ss_pred cEEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999998654333 56677778888999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhccccchhhHH
Q 041277 517 APRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTS 594 (1133)
Q Consensus 517 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 594 (1133)
+|++||||||||+||+.+++.+.+.|+++.+ |+|+|+|||+++.+..||+|++|++|++++.|+++++++ ..+.|.+
T Consensus 174 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~-~~~~~~~ 252 (271)
T 2ixe_A 174 KPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLME-RGGCYRS 252 (271)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHH-HTSHHHH
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHh-CcHHHHH
Confidence 9999999999999999999999999998753 899999999999988899999999999999999999987 4678888
Q ss_pred HHHhh
Q 041277 595 LVRLQ 599 (1133)
Q Consensus 595 ~~~~~ 599 (1133)
++..+
T Consensus 253 ~~~~~ 257 (271)
T 2ixe_A 253 MVEAL 257 (271)
T ss_dssp HHHC-
T ss_pred HHHHh
Confidence 87654
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-52 Score=450.13 Aligned_cols=236 Identities=46% Similarity=0.770 Sum_probs=217.6
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
|+++|++|+|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+...+|++|+
T Consensus 2 l~~~~l~~~y~~--~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (243)
T 1mv5_A 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (243)
T ss_dssp EEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEEeCC--CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEE
Confidence 789999999952 235999999999999999999999999999999999999999999999999998877667788999
Q ss_pred EEecCCCCccccHHHHHhcC-CCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCC
Q 041277 441 LVSQEPALFATSIKENILFG-KEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPR 519 (1133)
Q Consensus 441 ~v~Q~~~l~~~ti~eni~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~ 519 (1133)
||||+|.+|+.|++||+.++ .+....+++.++++.+++.++++++|.|+++.+++++.+||||||||++|||||+++|+
T Consensus 80 ~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~ 159 (243)
T 1mv5_A 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (243)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999997 44556778889999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhccccchhhHHHHHhh
Q 041277 520 ILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQ 599 (1133)
Q Consensus 520 illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 599 (1133)
+||||||||+||+.+++.+.+.|+++.+|+|+|++||+++.+..||+|++|++|++++.|+++++.+ ....|..++..+
T Consensus 160 lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~~~~ 238 (243)
T 1mv5_A 160 ILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVA-THPLYAKYVSEQ 238 (243)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHH-HCHHHHHHHHCC
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHh-ccHHHHHHHHhh
Confidence 9999999999999999999999988777999999999999887899999999999999999999986 466777777644
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-49 Score=453.37 Aligned_cols=234 Identities=27% Similarity=0.457 Sum_probs=216.6
Q ss_pred cccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhh
Q 041277 358 LGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRS 437 (1133)
Q Consensus 358 ~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~ 437 (1133)
.+.|+++||+|+|+.. +.++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.+++...+|+
T Consensus 17 ~~~i~~~~l~~~y~~~-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr 94 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEG-GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRK 94 (390)
T ss_dssp SCCEEEEEEEEESSSS-SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHH
T ss_pred CCeEEEEEEEEEecCC-CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhC
Confidence 4679999999999632 3459999999999999999999999999999999999998 9999999999999999999999
Q ss_pred hceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhC
Q 041277 438 QMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKA 517 (1133)
Q Consensus 438 ~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 517 (1133)
+||||||++.+|+.||+||+.+.. ....+++.++++.+++.+++++.|.+++|.++++|.+||||||||++|||||+++
T Consensus 95 ~ig~v~Q~~~lf~~tv~enl~~~~-~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~ 173 (390)
T 3gd7_A 95 AFGVIPQKVFIFSGTFRKNLDPNA-AHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSK 173 (390)
T ss_dssp TEEEESCCCCCCSEEHHHHHCTTC-CSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTT
T ss_pred CEEEEcCCcccCccCHHHHhhhcc-ccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999998644 3467889999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhccccchhhHH
Q 041277 518 PRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTS 594 (1133)
Q Consensus 518 ~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 594 (1133)
|++||||||||+||+.+++.+++.|++..+++|+|+|||+++.+..||||++|++|+|++.|+++|+.+.+...|..
T Consensus 174 P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~p~~~~va 250 (390)
T 3gd7_A 174 AKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVA 250 (390)
T ss_dssp CCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHCCSBHHHH
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCchHHH
Confidence 99999999999999999999999999877789999999999988889999999999999999999998755555543
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-48 Score=419.11 Aligned_cols=225 Identities=29% Similarity=0.493 Sum_probs=201.4
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.|+++|++|+|++. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +|
T Consensus 3 ~l~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i 68 (237)
T 2cbz_A 3 SITVRNATFTWARS-DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SV 68 (237)
T ss_dssp CEEEEEEEEESCTT-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CE
T ss_pred eEEEEEEEEEeCCC-CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EE
Confidence 38999999999632 24599999999999999999999999999999999999999999999998 49
Q ss_pred eEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCC
Q 041277 440 GLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPR 519 (1133)
Q Consensus 440 ~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~ 519 (1133)
+||||+|++++.|++||+.++... ..++..++.+.+++.+.+..+|.|++|.+++++.+||||||||++|||||+++|+
T Consensus 69 ~~v~Q~~~~~~~tv~enl~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ 147 (237)
T 2cbz_A 69 AYVPQQAWIQNDSLRENILFGCQL-EEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNAD 147 (237)
T ss_dssp EEECSSCCCCSEEHHHHHHTTSCC-CTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEEcCCCcCCCcCHHHHhhCcccc-CHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 999999999989999999997542 2334556667777778888889999999999999999999999999999999999
Q ss_pred EEEEeCcccCCChHHHHHHHHHHH---HHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhccccchhhHHHH
Q 041277 520 ILLLDEATSALDSESERVVQEALD---KAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLV 596 (1133)
Q Consensus 520 illlDE~ts~lD~~~~~~i~~~l~---~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 596 (1133)
+||||||||+||+.+++.+.+.+. +..+++|+|++||+++.+..||+|++|++|++++.|+++++++ ..+.|.+++
T Consensus 148 lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~~ 226 (237)
T 2cbz_A 148 IYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLA-RDGAFAEFL 226 (237)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHH-HTSHHHHHH
T ss_pred EEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhh-ccHHHHHHH
Confidence 999999999999999999999884 3446899999999999988899999999999999999999987 577888888
Q ss_pred Hhhc
Q 041277 597 RLQT 600 (1133)
Q Consensus 597 ~~~~ 600 (1133)
..|.
T Consensus 227 ~~~~ 230 (237)
T 2cbz_A 227 RTYA 230 (237)
T ss_dssp HHTC
T ss_pred HHHH
Confidence 7664
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-48 Score=415.63 Aligned_cols=221 Identities=27% Similarity=0.432 Sum_probs=196.4
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhh
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 438 (1133)
+.|+++||+|+|++. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 5 ~~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~ 70 (229)
T 2pze_A 5 TEVVMENVTAFWEEG-GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------R 70 (229)
T ss_dssp EEEEEEEEEECSSTT-SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------C
T ss_pred ceEEEEEEEEEeCCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------E
Confidence 468999999999632 24599999999999999999999999999999999999999999999998 4
Q ss_pred ceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCC
Q 041277 439 MGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAP 518 (1133)
Q Consensus 439 i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~ 518 (1133)
|+||||+|++|+.|++||+.++.. ....+..++++.+++.++++.+|.++++.+++++.+||||||||++|||||+++|
T Consensus 71 i~~v~q~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p 149 (229)
T 2pze_A 71 ISFCSQFSWIMPGTIKENIIFGVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDA 149 (229)
T ss_dssp EEEECSSCCCCSBCHHHHHHTTSC-CCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCC
T ss_pred EEEEecCCcccCCCHHHHhhccCC-cChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999753 2344556677778888999999999999999999999999999999999999999
Q ss_pred CEEEEeCcccCCChHHHHHHHHHH-HHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhccccchhhHHH
Q 041277 519 RILLLDEATSALDSESERVVQEAL-DKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSL 595 (1133)
Q Consensus 519 ~illlDE~ts~lD~~~~~~i~~~l-~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 595 (1133)
+++|||||||+||+.+++.+.+.+ ++..+++|+|++||+++.+..||++++|++|++++.|+++++.+ ..+.|.++
T Consensus 150 ~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~~~ 226 (229)
T 2pze_A 150 DLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQN-LQPDFSSK 226 (229)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHT-C--CHHHH
T ss_pred CEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHh-cChHHHHH
Confidence 999999999999999999999864 55556899999999999887899999999999999999999976 34455544
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-48 Score=435.17 Aligned_cols=225 Identities=27% Similarity=0.458 Sum_probs=191.8
Q ss_pred ccEEEEEEEEEcCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHH---
Q 041277 359 GEVEFKCVQFAYPSRP-ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKW--- 434 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~--- 434 (1133)
.-|+++||+++|+... ...+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++..++..+
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~ 102 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 4699999999996432 245899999999999999999999999999999999999999999999999999988665
Q ss_pred HhhhceEEecCCCCccc-cHHHHHhcCCC--CCCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHH
Q 041277 435 LRSQMGLVSQEPALFAT-SIKENILFGKE--DASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQR 507 (1133)
Q Consensus 435 ~r~~i~~v~Q~~~l~~~-ti~eni~~~~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqr 507 (1133)
+|++||||||++.+|+. ||+||+.++.. .... +++.++++.+++.++ ......+||||||||
T Consensus 103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~-----------~~~~~~~LSGGqkQR 171 (366)
T 3tui_C 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDK-----------HDSYPSNLSGGQKQR 171 (366)
T ss_dssp HHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGG-----------TTCCTTTSCHHHHHH
T ss_pred HhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchH-----------hcCChhhCCHHHHHH
Confidence 47789999999999876 99999998632 1222 234455555554433 334456899999999
Q ss_pred HHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchh
Q 041277 508 IAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584 (1133)
Q Consensus 508 i~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 584 (1133)
++|||||+.+|++||||||||+||+.+++.+.+.|+++. .|+|+|+|||+++.+.. ||||++|++|+++++|+++++
T Consensus 172 VaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev 251 (366)
T 3tui_C 172 VAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 251 (366)
T ss_dssp HHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHH
T ss_pred HHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999999999999999874 38999999999999876 999999999999999999999
Q ss_pred ccccchhhHH
Q 041277 585 IQAESGLYTS 594 (1133)
Q Consensus 585 ~~~~~~~~~~ 594 (1133)
+..+...|.+
T Consensus 252 ~~~p~~~~~~ 261 (366)
T 3tui_C 252 FSHPKTPLAQ 261 (366)
T ss_dssp HSSCCSHHHH
T ss_pred HhCCCcHHHH
Confidence 8755555544
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-47 Score=420.76 Aligned_cols=214 Identities=28% Similarity=0.481 Sum_probs=183.3
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecC--CCCHHHHhh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSID--KLQLKWLRS 437 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~--~~~~~~~r~ 437 (1133)
-|+++||+|+|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++. ..+...+|+
T Consensus 7 ~l~i~~ls~~y~~~--~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 7 ILKVEELNYNYSDG--THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp EEEEEEEEEECTTS--CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred EEEEEEEEEEECCC--CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 48999999999743 34999999999999999999999999999999999999999999999999984 233456788
Q ss_pred hceEEecCC--CCccccHHHHHhcCCC--CCCHH----HHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHH
Q 041277 438 QMGLVSQEP--ALFATSIKENILFGKE--DASME----EVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIA 509 (1133)
Q Consensus 438 ~i~~v~Q~~--~l~~~ti~eni~~~~~--~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~ 509 (1133)
+||||||+| .+|..||+||+.++.. ..+.+ ++.++++..++.+ .....+.+||||||||++
T Consensus 85 ~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-----------~~~~~~~~LSgGqkQRv~ 153 (275)
T 3gfo_A 85 SIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEH-----------LKDKPTHCLSFGQKKRVA 153 (275)
T ss_dssp SEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGG-----------GTTSBGGGSCHHHHHHHH
T ss_pred cEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-----------hhcCCcccCCHHHHHHHH
Confidence 999999998 4778899999998632 12232 3444444444432 334455689999999999
Q ss_pred HHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 510 IARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 510 iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
|||||+.+|++||||||||+||+.+++.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|+++++|++++++.
T Consensus 154 iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 154 IAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 233 (275)
T ss_dssp HHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTH
T ss_pred HHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999999999999999998875 38999999999999875 99999999999999999999986
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-47 Score=412.58 Aligned_cols=215 Identities=30% Similarity=0.430 Sum_probs=178.5
Q ss_pred EEEEEEEEEcCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHH----
Q 041277 361 VEFKCVQFAYPSRP-ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWL---- 435 (1133)
Q Consensus 361 i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~---- 435 (1133)
|+++||+|+|+... ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+++...+
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 78999999997432 2358999999999999999999999999999999999999999999999999998887653
Q ss_pred hhhceEEecCCCCccc-cHHHHHhcCCC-----CCCHH----HHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHH
Q 041277 436 RSQMGLVSQEPALFAT-SIKENILFGKE-----DASME----EVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQK 505 (1133)
Q Consensus 436 r~~i~~v~Q~~~l~~~-ti~eni~~~~~-----~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 505 (1133)
|++||||||+|.+|+. ||+||+.++.. ....+ ++.++++..++.+. .....+.+||||||
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGq~ 151 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEER----------FANHKPNQLSGGQQ 151 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGG----------GTTCCGGGSCHHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChh----------hhhCChhhCCHHHH
Confidence 4569999999999986 99999987421 12222 23333333332211 12445678999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-C-CCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcch
Q 041277 506 QRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-V-GRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDE 583 (1133)
Q Consensus 506 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~-~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~ 583 (1133)
||++|||||+.+|++||||||||+||+.+++.+.+.++++. + |+|+|+|||+++.++.||+|++|++|++++.++.++
T Consensus 152 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~ 231 (235)
T 3tif_A 152 QRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRG 231 (235)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC-
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhh
Confidence 99999999999999999999999999999999999999874 3 899999999999776799999999999999998877
Q ss_pred hc
Q 041277 584 LI 585 (1133)
Q Consensus 584 l~ 585 (1133)
+.
T Consensus 232 ~~ 233 (235)
T 3tif_A 232 FD 233 (235)
T ss_dssp --
T ss_pred hc
Confidence 53
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-46 Score=406.73 Aligned_cols=218 Identities=24% Similarity=0.435 Sum_probs=185.1
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHH-hhh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWL-RSQ 438 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~-r~~ 438 (1133)
-|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+...+ |++
T Consensus 6 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (240)
T 1ji0_A 6 VLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred eEEEEeEEEEECC---eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence 4899999999964 359999999999999999999999999999999999999999999999999988776654 456
Q ss_pred ceEEecCCCCccc-cHHHHHhcCC-CCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhh
Q 041277 439 MGLVSQEPALFAT-SIKENILFGK-EDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIK 516 (1133)
Q Consensus 439 i~~v~Q~~~l~~~-ti~eni~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~ 516 (1133)
||||||++.+|.. |++||+.++. +....++..+.+ .+.++.++ |++...++.+.+||||||||++|||||+.
T Consensus 83 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~-----~~~l~~~~-~l~~~~~~~~~~LSgGq~qrv~lAraL~~ 156 (240)
T 1ji0_A 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDL-----EWIFSLFP-RLKERLKQLGGTLSGGEQQMLAIGRALMS 156 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHH-----HHHHHHCH-HHHTTTTSBSSSSCHHHHHHHHHHHHHTT
T ss_pred EEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHH-----HHHHHHcc-cHhhHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 9999999999987 9999999864 211112222221 22344443 34445566778999999999999999999
Q ss_pred CCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 517 APRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 517 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
+|++||||||||+||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 157 ~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 228 (240)
T 1ji0_A 157 RPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228 (240)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhc
Confidence 999999999999999999999999998875 58999999999988754 99999999999999999999865
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-46 Score=424.74 Aligned_cols=220 Identities=28% Similarity=0.479 Sum_probs=185.6
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCC--CHHHHhh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKL--QLKWLRS 437 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~--~~~~~r~ 437 (1133)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+. .....++
T Consensus 4 ~l~i~~ls~~y~~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r 80 (359)
T 3fvq_A 4 ALHIGHLSKSFQN---TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER 80 (359)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhC
Confidence 4899999999974 3599999999999999999999999999999999999999999999999998332 2233467
Q ss_pred hceEEecCCCCccc-cHHHHHhcCCCCC--C----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHH
Q 041277 438 QMGLVSQEPALFAT-SIKENILFGKEDA--S----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAI 510 (1133)
Q Consensus 438 ~i~~v~Q~~~l~~~-ti~eni~~~~~~~--~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~i 510 (1133)
+||||||++.+|+. ||+|||.|+.... . .+++.++++..++.++.+ ....+||||||||++|
T Consensus 81 ~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~-----------r~~~~LSGGq~QRVal 149 (359)
T 3fvq_A 81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAG-----------RYPHELSGGQQQRAAL 149 (359)
T ss_dssp CCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTT-----------SCGGGSCHHHHHHHHH
T ss_pred CEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhc-----------CChhhCCHHHHHHHHH
Confidence 89999999999965 9999999975321 1 234556666665544433 3446899999999999
Q ss_pred HHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhccc
Q 041277 511 ARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQA 587 (1133)
Q Consensus 511 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 587 (1133)
||||+.+|++||||||||+||+.++..+++.+.+.. .|+|+|+|||+++.+.. ||||++|++|+|++.|+++++...
T Consensus 150 ArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~ 229 (359)
T 3fvq_A 150 ARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQ 229 (359)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhC
Confidence 999999999999999999999999999998776653 48999999999998865 999999999999999999999865
Q ss_pred cchhhH
Q 041277 588 ESGLYT 593 (1133)
Q Consensus 588 ~~~~~~ 593 (1133)
+...+.
T Consensus 230 p~~~~~ 235 (359)
T 3fvq_A 230 PADLDA 235 (359)
T ss_dssp CSCHHH
T ss_pred cccHHH
Confidence 444443
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-46 Score=411.31 Aligned_cols=213 Identities=29% Similarity=0.467 Sum_probs=182.5
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecC--CCCHHHHhh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSID--KLQLKWLRS 437 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~--~~~~~~~r~ 437 (1133)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++. ..+...+|+
T Consensus 24 ~l~i~~l~~~y~~---~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 100 (263)
T 2olj_A 24 MIDVHQLKKSFGS---LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE 100 (263)
T ss_dssp SEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC
Confidence 4999999999964 35999999999999999999999999999999999999999999999999985 334556788
Q ss_pred hceEEecCCCCccc-cHHHHHhcCC---CCCCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHH
Q 041277 438 QMGLVSQEPALFAT-SIKENILFGK---EDASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIA 509 (1133)
Q Consensus 438 ~i~~v~Q~~~l~~~-ti~eni~~~~---~~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~ 509 (1133)
+||||||++.+|+. |++||+.++. ..... +++.++++..++. ......+.+||||||||++
T Consensus 101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-----------~~~~~~~~~LSgGqkQRv~ 169 (263)
T 2olj_A 101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLK-----------DKAHAYPDSLSGGQAQRVA 169 (263)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCG-----------GGTTSCGGGSCHHHHHHHH
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-----------hHhcCChhhCCHHHHHHHH
Confidence 89999999999876 9999998852 11222 2334444444433 2334455689999999999
Q ss_pred HHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 510 IARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 510 iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
|||||+.+|++|||||||++||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 170 lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
T 2olj_A 170 IARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFD 248 (263)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999998874 48999999999999875 99999999999999999999875
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-46 Score=411.03 Aligned_cols=213 Identities=27% Similarity=0.424 Sum_probs=186.9
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
-++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.+.+++.+
T Consensus 11 ~l~~~~l~~~~~~---~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i 87 (266)
T 4g1u_C 11 LLEASHLHYHVQQ---QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTR 87 (266)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHE
T ss_pred eEEEEeEEEEeCC---eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheE
Confidence 5899999999974 3599999999999999999999999999999999999999999999999999999998899999
Q ss_pred eEEecCCCC-ccccHHHHHhcCCCC----CCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHH
Q 041277 440 GLVSQEPAL-FATSIKENILFGKED----ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAI 514 (1133)
Q Consensus 440 ~~v~Q~~~l-~~~ti~eni~~~~~~----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal 514 (1133)
+|++|++.+ ++.||+||+.++... ...+++.++++..++.++ ......+||||||||++|||||
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGq~QRv~iAraL 156 (266)
T 4g1u_C 88 AVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLAL-----------AQRDYRVLSGGEQQRVQLARVL 156 (266)
T ss_dssp EEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTT-----------TTSBGGGCCHHHHHHHHHHHHH
T ss_pred EEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhH-----------hcCCcccCCHHHHHHHHHHHHH
Confidence 999999987 466999999987432 223455556665554332 2234458999999999999999
Q ss_pred hh------CCCEEEEeCcccCCChHHHHHHHHHHHHHh-C-CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhc
Q 041277 515 IK------APRILLLDEATSALDSESERVVQEALDKAV-V-GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELI 585 (1133)
Q Consensus 515 ~~------~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 585 (1133)
++ +|++||||||||+||+.+++.+.+.|+++. + ++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 157 ~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 157 AQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp HHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred hcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 99 999999999999999999999999999874 3 5799999999999875 9999999999999999999997
Q ss_pred c
Q 041277 586 Q 586 (1133)
Q Consensus 586 ~ 586 (1133)
+
T Consensus 237 ~ 237 (266)
T 4g1u_C 237 N 237 (266)
T ss_dssp C
T ss_pred C
Confidence 6
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-46 Score=427.04 Aligned_cols=219 Identities=28% Similarity=0.455 Sum_probs=188.1
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. +++|
T Consensus 3 ~l~~~~l~~~yg~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~i 77 (381)
T 3rlf_A 3 SVQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGV 77 (381)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCE
T ss_pred EEEEEeEEEEECC---EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCE
Confidence 4899999999974 3599999999999999999999999999999999999999999999999999887765 3679
Q ss_pred eEEecCCCCccc-cHHHHHhcCCC--CCCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHH
Q 041277 440 GLVSQEPALFAT-SIKENILFGKE--DASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIAR 512 (1133)
Q Consensus 440 ~~v~Q~~~l~~~-ti~eni~~~~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iAR 512 (1133)
|||+|++.+|+. ||+|||.|+.. .... +++.++++..++.++. .....+||||||||++|||
T Consensus 78 g~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~-----------~r~p~~LSGGqrQRVaiAr 146 (381)
T 3rlf_A 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLL-----------DRKPKALSGGQRQRVAIGR 146 (381)
T ss_dssp EEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGT-----------TCCGGGSCHHHHHHHHHHH
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhHCCHHHHHHHHHHH
Confidence 999999999975 99999998632 1222 3455555555554433 3445689999999999999
Q ss_pred HHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-C-CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhccccc
Q 041277 513 AIIKAPRILLLDEATSALDSESERVVQEALDKAV-V-GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQAES 589 (1133)
Q Consensus 513 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 589 (1133)
||+.+|++||||||||+||+..+..+.+.|+++. + |.|+|+|||+++.+.. ||||++|++|++++.|+++++...+.
T Consensus 147 AL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p~ 226 (381)
T 3rlf_A 147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPA 226 (381)
T ss_dssp HHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCS
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCc
Confidence 9999999999999999999999999999999874 3 8999999999998865 99999999999999999999986555
Q ss_pred hhhHH
Q 041277 590 GLYTS 594 (1133)
Q Consensus 590 ~~~~~ 594 (1133)
..|..
T Consensus 227 ~~~v~ 231 (381)
T 3rlf_A 227 DRFVA 231 (381)
T ss_dssp BHHHH
T ss_pred cHHHH
Confidence 55544
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-46 Score=408.25 Aligned_cols=213 Identities=27% Similarity=0.452 Sum_probs=183.0
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCC----------
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDK---------- 429 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~---------- 429 (1133)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..
T Consensus 6 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (262)
T 1b0u_A 6 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 82 (262)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccc
Confidence 4899999999964 359999999999999999999999999999999999999999999999999862
Q ss_pred CCH---HHHhhhceEEecCCCCccc-cHHHHHhcCC---CCCC----HHHHHHHHHHhchHHH-HHhCCCcccccccCCC
Q 041277 430 LQL---KWLRSQMGLVSQEPALFAT-SIKENILFGK---EDAS----MEEVIEAAKASNAHNF-IRQLPQQYDTQVGERG 497 (1133)
Q Consensus 430 ~~~---~~~r~~i~~v~Q~~~l~~~-ti~eni~~~~---~~~~----~~~~~~~~~~~~~~~~-i~~l~~g~~t~~~~~g 497 (1133)
.+. ..+|++||||||++.+|+. ||+||+.++. .... .+++.++++..++.++ ..+ ..
T Consensus 83 ~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----------~~ 151 (262)
T 1b0u_A 83 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGK-----------YP 151 (262)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTS-----------CG
T ss_pred cChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcC-----------Cc
Confidence 443 3467889999999999876 9999998842 1122 2345556666665554 333 34
Q ss_pred CCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeE
Q 041277 498 VQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQV 575 (1133)
Q Consensus 498 ~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i 575 (1133)
.+||||||||++|||||+.+|++||||||||+||+.+++.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++
T Consensus 152 ~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i 231 (262)
T 1b0u_A 152 VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 231 (262)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 5899999999999999999999999999999999999999999998874 48999999999999875 999999999999
Q ss_pred EeecCcchhcc
Q 041277 576 METGSHDELIQ 586 (1133)
Q Consensus 576 ~~~g~~~~l~~ 586 (1133)
++.|+++++.+
T Consensus 232 ~~~g~~~~~~~ 242 (262)
T 1b0u_A 232 EEEGDPEQVFG 242 (262)
T ss_dssp EEEECHHHHHH
T ss_pred EEeCCHHHHHh
Confidence 99999999875
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-45 Score=404.15 Aligned_cols=214 Identities=21% Similarity=0.368 Sum_probs=181.8
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHH-HHhhh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLK-WLRSQ 438 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~-~~r~~ 438 (1133)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+.. ..|++
T Consensus 7 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 7 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEeeeEEEECC---EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 4899999999964 3599999999999999999999999999999999999999999999999999876643 45778
Q ss_pred ceEEecCCCCcc-ccHHHHHhcCCCC---------------CCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCCh
Q 041277 439 MGLVSQEPALFA-TSIKENILFGKED---------------ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSG 502 (1133)
Q Consensus 439 i~~v~Q~~~l~~-~ti~eni~~~~~~---------------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSg 502 (1133)
||||||++.+|. .|++||+.++... ...++.. ..+.+.++.+ |++........+|||
T Consensus 84 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSg 156 (257)
T 1g6h_A 84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMV-----EKAFKILEFL--KLSHLYDRKAGELSG 156 (257)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHH-----HHHHHHHHHT--TCGGGTTSBGGGSCH
T ss_pred EEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHH-----HHHHHHHHHc--CCchhhCCCchhCCH
Confidence 999999999886 4999999986421 1111111 1123344444 444555666779999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecC
Q 041277 503 GQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGS 580 (1133)
Q Consensus 503 Gqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 580 (1133)
|||||++|||||+.+|++||||||||+||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus 157 GqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~ 236 (257)
T 1g6h_A 157 GQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 236 (257)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeC
Confidence 99999999999999999999999999999999999999998874 48999999999999865 99999999999999999
Q ss_pred cch
Q 041277 581 HDE 583 (1133)
Q Consensus 581 ~~~ 583 (1133)
+++
T Consensus 237 ~~~ 239 (257)
T 1g6h_A 237 GEE 239 (257)
T ss_dssp SHH
T ss_pred HHH
Confidence 998
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-46 Score=397.05 Aligned_cols=208 Identities=26% Similarity=0.381 Sum_probs=176.2
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHH---Hh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKW---LR 436 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~---~r 436 (1133)
-|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... +|
T Consensus 4 ~l~~~~l~~~y~~---~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (224)
T 2pcj_A 4 ILRAENIKKVIRG---YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLR 80 (224)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHH
T ss_pred EEEEEeEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHH
Confidence 3899999999964 35999999999999999999999999999999999999999999999999998776543 34
Q ss_pred -hhceEEecCCCCccc-cHHHHHhcCCC--CCCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHH
Q 041277 437 -SQMGLVSQEPALFAT-SIKENILFGKE--DASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRI 508 (1133)
Q Consensus 437 -~~i~~v~Q~~~l~~~-ti~eni~~~~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 508 (1133)
++|+||||++.+|.. |++||+.++.. .... +++.++++..+ +.........+||||||||+
T Consensus 81 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSgGq~qrv 149 (224)
T 2pcj_A 81 NRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELG-----------LGDKLSRKPYELSGGEQQRV 149 (224)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTT-----------CTTCTTCCGGGSCHHHHHHH
T ss_pred hCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcC-----------CchhhhCChhhCCHHHHHHH
Confidence 679999999998865 99999987531 1111 22333333333 33334445668999999999
Q ss_pred HHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCc
Q 041277 509 AIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSH 581 (1133)
Q Consensus 509 ~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~ 581 (1133)
+|||||+.+|++|||||||++||+.+++.+.+.|+++. +|+|+|++||+++.+..||+|++|++|+++++|+.
T Consensus 150 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~~ 223 (224)
T 2pcj_A 150 AIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEITR 223 (224)
T ss_dssp HHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEeee
Confidence 99999999999999999999999999999999998874 58999999999998866999999999999998863
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-45 Score=417.88 Aligned_cols=217 Identities=29% Similarity=0.511 Sum_probs=186.7
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+.. +++|
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (359)
T 2yyz_A 3 SIRVVNLKKYFGK---VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREV 77 (359)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcE
Confidence 3899999999964 3589999999999999999999999999999999999999999999999999877653 5789
Q ss_pred eEEecCCCCccc-cHHHHHhcCCCCC--C----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHH
Q 041277 440 GLVSQEPALFAT-SIKENILFGKEDA--S----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIAR 512 (1133)
Q Consensus 440 ~~v~Q~~~l~~~-ti~eni~~~~~~~--~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iAR 512 (1133)
|||||++.+|+. ||+||+.|+.... . .+++.++++..++.++.++ ...+||||||||++|||
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r-----------~~~~LSgGq~QRvalAr 146 (359)
T 2yyz_A 78 GMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDR-----------KPTQLSGGQQQRVALAR 146 (359)
T ss_dssp EEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTS-----------CGGGSCHHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcC-----------ChhhCCHHHHHHHHHHH
Confidence 999999999975 9999999975321 1 2345566666665544433 34589999999999999
Q ss_pred HHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhccccc
Q 041277 513 AIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQAES 589 (1133)
Q Consensus 513 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 589 (1133)
||+.+|++||||||||+||+.+++.+.+.|+++.+ |+|+|+|||+++.+.. ||+|++|++|++++.|+++++.+.+.
T Consensus 147 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p~ 226 (359)
T 2yyz_A 147 ALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPK 226 (359)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcc
Confidence 99999999999999999999999999999988743 8999999999998865 99999999999999999999986443
Q ss_pred hhh
Q 041277 590 GLY 592 (1133)
Q Consensus 590 ~~~ 592 (1133)
..|
T Consensus 227 ~~~ 229 (359)
T 2yyz_A 227 NMF 229 (359)
T ss_dssp BHH
T ss_pred cHH
Confidence 333
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-45 Score=402.47 Aligned_cols=213 Identities=26% Similarity=0.411 Sum_probs=183.7
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhh
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 438 (1133)
+.|+++||+++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ....+|++
T Consensus 14 ~~l~i~~l~~~y~~---~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~ 89 (256)
T 1vpl_A 14 GAVVVKDLRKRIGK---KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKL 89 (256)
T ss_dssp CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTT
T ss_pred CeEEEEEEEEEECC---EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhc
Confidence 56999999999963 359999999999999999999999999999999999999999999999999876 45667889
Q ss_pred ceEEecCCCCccc-cHHHHHhcCCC--CCCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHH
Q 041277 439 MGLVSQEPALFAT-SIKENILFGKE--DASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIA 511 (1133)
Q Consensus 439 i~~v~Q~~~l~~~-ti~eni~~~~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iA 511 (1133)
||||||++.+|.. |++||+.++.. .... +++.++++..++.++ ......+||||||||++||
T Consensus 90 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LSgGq~qRv~lA 158 (256)
T 1vpl_A 90 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEK-----------IKDRVSTYSKGMVRKLLIA 158 (256)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGG-----------GGSBGGGCCHHHHHHHHHH
T ss_pred EEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchH-----------hcCChhhCCHHHHHHHHHH
Confidence 9999999999876 99999987421 1122 234445555544332 3334568999999999999
Q ss_pred HHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 512 RAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 512 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
|||+.+|++||||||||+||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 159 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 159 RALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 99999999999999999999999999999998875 58999999999999876 99999999999999999998864
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-45 Score=419.27 Aligned_cols=217 Identities=34% Similarity=0.508 Sum_probs=185.0
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+.. +++|
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (362)
T 2it1_A 3 EIKLENIVKKFGN---FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNV 77 (362)
T ss_dssp CEEEEEEEEESSS---SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcE
Confidence 3899999999964 3599999999999999999999999999999999999999999999999999877653 4689
Q ss_pred eEEecCCCCccc-cHHHHHhcCCC--CCCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHH
Q 041277 440 GLVSQEPALFAT-SIKENILFGKE--DASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIAR 512 (1133)
Q Consensus 440 ~~v~Q~~~l~~~-ti~eni~~~~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iAR 512 (1133)
|||||++.+|+. ||+||+.|+.. .... +++.++++..++.++. .....+||||||||++|||
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~-----------~r~~~~LSGGq~QRvalAr 146 (362)
T 2it1_A 78 GLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLL-----------NRYPWQLSGGQQQRVAIAR 146 (362)
T ss_dssp EEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCT-----------TCCGGGSCHHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHh-----------hCChhhCCHHHHHHHHHHH
Confidence 999999999975 99999998632 1122 3345555555544333 3344689999999999999
Q ss_pred HHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhccccc
Q 041277 513 AIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQAES 589 (1133)
Q Consensus 513 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 589 (1133)
||+.+|++||||||||+||+.+++.+.+.|+++.+ |+|+|+|||+++.+.. ||+|++|++|+|++.|+++++.+.+.
T Consensus 147 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p~ 226 (362)
T 2it1_A 147 ALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKPK 226 (362)
T ss_dssp HHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred HHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 99999999999999999999999999999988743 8999999999998765 99999999999999999999986443
Q ss_pred hhh
Q 041277 590 GLY 592 (1133)
Q Consensus 590 ~~~ 592 (1133)
..|
T Consensus 227 ~~~ 229 (362)
T 2it1_A 227 YKF 229 (362)
T ss_dssp BHH
T ss_pred chH
Confidence 333
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-45 Score=416.13 Aligned_cols=218 Identities=28% Similarity=0.478 Sum_probs=186.0
Q ss_pred ccEEEEEEEEEc-CCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhh
Q 041277 359 GEVEFKCVQFAY-PSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRS 437 (1133)
Q Consensus 359 ~~i~~~~v~~~y-~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~ 437 (1133)
..|+++|++++| ++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+. .++
T Consensus 13 ~~l~~~~l~~~y~g~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r 87 (355)
T 1z47_A 13 MTIEFVGVEKIYPGG---ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKR 87 (355)
T ss_dssp EEEEEEEEEECCTTS---TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGS
T ss_pred ceEEEEEEEEEEcCC---CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhC
Confidence 469999999999 53 348999999999999999999999999999999999999999999999999987654 367
Q ss_pred hceEEecCCCCccc-cHHHHHhcCCC--CCC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHH
Q 041277 438 QMGLVSQEPALFAT-SIKENILFGKE--DAS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAI 510 (1133)
Q Consensus 438 ~i~~v~Q~~~l~~~-ti~eni~~~~~--~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~i 510 (1133)
+||||+|++.+|+. ||+|||.|+.. ... .+++.++++..++.++.++ ...+||||||||++|
T Consensus 88 ~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r-----------~~~~LSGGq~QRval 156 (355)
T 1z47_A 88 NVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANR-----------FPHELSGGQQQRVAL 156 (355)
T ss_dssp SEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTS-----------CGGGSCHHHHHHHHH
T ss_pred cEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcC-----------CcccCCHHHHHHHHH
Confidence 89999999999975 99999998632 112 2345556666655444333 345899999999999
Q ss_pred HHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhccc
Q 041277 511 ARAIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQA 587 (1133)
Q Consensus 511 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 587 (1133)
||||+.+|++||||||||+||+.+++.+.+.|+++.+ |+|+|+|||+++.+.. ||+|++|++|+|++.|+++++.+.
T Consensus 157 ArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 236 (355)
T 1z47_A 157 ARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEK 236 (355)
T ss_dssp HHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999999988743 8999999999998865 999999999999999999999764
Q ss_pred cchhh
Q 041277 588 ESGLY 592 (1133)
Q Consensus 588 ~~~~~ 592 (1133)
+...|
T Consensus 237 p~~~~ 241 (355)
T 1z47_A 237 PGTLF 241 (355)
T ss_dssp CSSHH
T ss_pred ccchH
Confidence 33333
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-45 Score=407.49 Aligned_cols=214 Identities=23% Similarity=0.340 Sum_probs=181.9
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecC--CCCHHHHh
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSID--KLQLKWLR 436 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~--~~~~~~~r 436 (1133)
..|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|
T Consensus 20 ~~l~~~~l~~~y~~---~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 96 (279)
T 2ihy_A 20 MLIQLDQIGRMKQG---KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVR 96 (279)
T ss_dssp EEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHH
T ss_pred ceEEEEeEEEEECC---EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHc
Confidence 35999999999964 35999999999999999999999999999999999999999999999999987 67777788
Q ss_pred hhceEEecCCCC-ccc--cHHHHHhcCCCC-------CCH---HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChH
Q 041277 437 SQMGLVSQEPAL-FAT--SIKENILFGKED-------ASM---EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGG 503 (1133)
Q Consensus 437 ~~i~~v~Q~~~l-~~~--ti~eni~~~~~~-------~~~---~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG 503 (1133)
++||||+|++.+ |.. |++||+.++... ... +++.++++..++ +........+||||
T Consensus 97 ~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LSgG 165 (279)
T 2ihy_A 97 QHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGM-----------SAKAQQYIGYLSTG 165 (279)
T ss_dssp TTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTC-----------GGGTTSBGGGSCHH
T ss_pred CcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCC-----------hhHhcCChhhCCHH
Confidence 899999999865 444 999999986421 111 223333433333 33344556789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeE--EEEecCcchhhc-CCEEEEEeCCeEEeec
Q 041277 504 QKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTT--IIIAHRLSTIRN-ADVIAVVQDGQVMETG 579 (1133)
Q Consensus 504 qkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~--i~itH~~~~~~~-~d~i~~l~~G~i~~~g 579 (1133)
||||++|||||+.+|++|||||||++||+.+++.+.+.|+++. +|+|+ |+|||+++.+.. ||+|++|++|++++.|
T Consensus 166 qkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g 245 (279)
T 2ihy_A 166 EKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQG 245 (279)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999999999998874 48999 999999999865 9999999999999999
Q ss_pred Ccchhcc
Q 041277 580 SHDELIQ 586 (1133)
Q Consensus 580 ~~~~l~~ 586 (1133)
+++++.+
T Consensus 246 ~~~~~~~ 252 (279)
T 2ihy_A 246 AVEDILT 252 (279)
T ss_dssp EHHHHCS
T ss_pred CHHHHhc
Confidence 9999875
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-45 Score=416.84 Aligned_cols=217 Identities=29% Similarity=0.423 Sum_probs=180.7
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+.. +++|
T Consensus 11 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 85 (372)
T 1v43_A 11 EVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 85 (372)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcE
Confidence 4899999999964 3589999999999999999999999999999999999999999999999999877653 5689
Q ss_pred eEEecCCCCccc-cHHHHHhcCCCC--CCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHH
Q 041277 440 GLVSQEPALFAT-SIKENILFGKED--ASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIAR 512 (1133)
Q Consensus 440 ~~v~Q~~~l~~~-ti~eni~~~~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iAR 512 (1133)
|||||++.+|+. ||+|||.|+... ... +++.++++..++.++. .....+||||||||++|||
T Consensus 86 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~-----------~r~~~~LSGGq~QRvalAr 154 (372)
T 1v43_A 86 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELL-----------NRYPAQLSGGQRQRVAVAR 154 (372)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGT-----------TSCTTTCCSSCHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHh-----------cCChhhCCHHHHHHHHHHH
Confidence 999999999975 999999998532 222 2345555555554433 3445689999999999999
Q ss_pred HHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhccccc
Q 041277 513 AIIKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQAES 589 (1133)
Q Consensus 513 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 589 (1133)
||+.+|++||||||||+||+.+++.+.+.|+++.+ |.|+|+|||+++.+.. ||+|++|++|++++.|+++++...+.
T Consensus 155 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~ 234 (372)
T 1v43_A 155 AIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPN 234 (372)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCS
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcc
Confidence 99999999999999999999999999999988743 8999999999998764 99999999999999999999986443
Q ss_pred hhh
Q 041277 590 GLY 592 (1133)
Q Consensus 590 ~~~ 592 (1133)
..|
T Consensus 235 ~~~ 237 (372)
T 1v43_A 235 SVF 237 (372)
T ss_dssp BHH
T ss_pred cHH
Confidence 334
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-45 Score=400.63 Aligned_cols=212 Identities=27% Similarity=0.508 Sum_probs=184.8
Q ss_pred EEEEEEEEEcCCCCC--CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhh
Q 041277 361 VEFKCVQFAYPSRPE--SIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~--~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 438 (1133)
|+++|++++|+.... +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... .+|++
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~ 79 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN 79 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGGG
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhhh
Confidence 789999999962111 3599999999999999999999999999999999999999999999999998642 66788
Q ss_pred ceEEecCC--CCccccHHHHHhcCCCC-----CCHHHHHHHHHHhchH--HHHHhCCCcccccccCCCCCCChHHHHHHH
Q 041277 439 MGLVSQEP--ALFATSIKENILFGKED-----ASMEEVIEAAKASNAH--NFIRQLPQQYDTQVGERGVQMSGGQKQRIA 509 (1133)
Q Consensus 439 i~~v~Q~~--~l~~~ti~eni~~~~~~-----~~~~~~~~~~~~~~~~--~~i~~l~~g~~t~~~~~g~~LSgGqkqri~ 509 (1133)
||||+|+| .++..|++||+.++... ...+++.++++..++. ++.++.| .+||||||||++
T Consensus 80 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----------~~LSgGq~qRv~ 148 (266)
T 2yz2_A 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVP-----------FFLSGGEKRRVA 148 (266)
T ss_dssp EEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCG-----------GGSCHHHHHHHH
T ss_pred EEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCCh-----------hhCCHHHHHHHH
Confidence 99999996 45678999999986421 2245677788887776 5554444 589999999999
Q ss_pred HHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 510 IARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 510 iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
|||||+.+|++||||||||+||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 149 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 149 IASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLE 227 (266)
T ss_dssp HHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999999874 58999999999999876 99999999999999999998865
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-45 Score=404.53 Aligned_cols=237 Identities=24% Similarity=0.407 Sum_probs=184.5
Q ss_pred HHHHHhccCCCCCCCCCcccccccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhc
Q 041277 333 RIMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRF 412 (1133)
Q Consensus 333 ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~ 412 (1133)
|+.++++.+++.. . ........+.|+++||+|.+ .++|+|+||+|++||+++|+||||||||||+++|+|+
T Consensus 17 ~~~~~~~~~~~~~-~---~~~~~~~~~~l~~~~l~~~~-----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 17 GFGELFEKAKQNN-N---NRKTSNGDDSLSFSNFSLLG-----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp HHHHHHHHCC---------------------------C-----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTS
T ss_pred HHHHHhccccccc-c---cccccCCCceEEEEEEEEcC-----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 6677776543321 1 11112223569999999864 2489999999999999999999999999999999999
Q ss_pred cCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCccccc
Q 041277 413 YAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQ 492 (1133)
Q Consensus 413 ~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~ 492 (1133)
++|++|+|.++| +|+||||++.+|++|++||+. +.. .....+.++++..++.+++..+|.++++.
T Consensus 88 ~~p~~G~I~~~g-------------~i~~v~Q~~~l~~~tv~enl~-~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 152 (290)
T 2bbs_A 88 LEPSEGKIKHSG-------------RISFCSQNSWIMPGTIKENII-GVS-YDEYRYRSVIKACQLEEDISKFAEKDNIV 152 (290)
T ss_dssp SCEEEEEEECCS-------------CEEEECSSCCCCSSBHHHHHH-TTC-CCHHHHHHHHHHTTCHHHHHTSTTGGGCB
T ss_pred CCCCCcEEEECC-------------EEEEEeCCCccCcccHHHHhh-Ccc-cchHHHHHHHHHhChHHHHHhccccccch
Confidence 999999999998 499999999999999999998 542 23445566777788889999999999999
Q ss_pred ccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHH-HHHhCCCeEEEEecCcchhhcCCEEEEEe
Q 041277 493 VGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEAL-DKAVVGRTTIIIAHRLSTIRNADVIAVVQ 571 (1133)
Q Consensus 493 ~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l-~~~~~~~t~i~itH~~~~~~~~d~i~~l~ 571 (1133)
+++++.+||||||||++|||||+++|++||||||||+||+.+++.+.+.+ +++.+++|+|++||+++.+..||+|++|+
T Consensus 153 ~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~ 232 (290)
T 2bbs_A 153 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILH 232 (290)
T ss_dssp C----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEE
T ss_pred hcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEE
Confidence 99999999999999999999999999999999999999999999999864 44556899999999999887899999999
Q ss_pred CCeEEeecCcchhccccchhhHH
Q 041277 572 DGQVMETGSHDELIQAESGLYTS 594 (1133)
Q Consensus 572 ~G~i~~~g~~~~l~~~~~~~~~~ 594 (1133)
+|++++.|+++++.. ....|..
T Consensus 233 ~G~i~~~g~~~~l~~-~~~~~~~ 254 (290)
T 2bbs_A 233 EGSSYFYGTFSELQN-LRPDFSS 254 (290)
T ss_dssp TTEEEEEECHHHHHH-HCHHHHH
T ss_pred CCeEEEeCCHHHHhh-hcHHHHH
Confidence 999999999999865 2334443
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-45 Score=412.76 Aligned_cols=215 Identities=29% Similarity=0.507 Sum_probs=185.8
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
|+++|++++|++ . +|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+. .+++||
T Consensus 2 l~~~~l~~~y~~---~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig 75 (348)
T 3d31_A 2 IEIESLSRKWKN---F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIA 75 (348)
T ss_dssp EEEEEEEEECSS---C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCE
T ss_pred EEEEEEEEEECC---E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEE
Confidence 689999999963 3 8999999999999999999999999999999999999999999999999987554 467899
Q ss_pred EEecCCCCccc-cHHHHHhcCCC---CCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhh
Q 041277 441 LVSQEPALFAT-SIKENILFGKE---DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIK 516 (1133)
Q Consensus 441 ~v~Q~~~l~~~-ti~eni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~ 516 (1133)
||||++.+|+. ||+||+.|+.. ....+++.++++..++.++.++ ...+||||||||++|||||+.
T Consensus 76 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~-----------~~~~LSgGq~QRvalAraL~~ 144 (348)
T 3d31_A 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDR-----------NPLTLSGGEQQRVALARALVT 144 (348)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTS-----------CGGGSCHHHHHHHHHHHHTTS
T ss_pred EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcC-----------ChhhCCHHHHHHHHHHHHHHc
Confidence 99999999976 99999998631 1122566667776665544333 345899999999999999999
Q ss_pred CCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhccccchhh
Q 041277 517 APRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQAESGLY 592 (1133)
Q Consensus 517 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 592 (1133)
+|++||||||||+||+.+++.+.+.|+++. .|+|+|+|||+++.+.. ||+|++|++|++++.|+++++.+.+...|
T Consensus 145 ~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p~~~~ 223 (348)
T 3d31_A 145 NPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGR 223 (348)
T ss_dssp CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTH
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCcccHH
Confidence 999999999999999999999999998874 38999999999998765 99999999999999999999986444434
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-45 Score=393.83 Aligned_cols=207 Identities=29% Similarity=0.434 Sum_probs=177.1
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
|+++|++++|++ +|+|+||++++ |+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+ ..|++||
T Consensus 2 l~~~~l~~~y~~-----~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~ 73 (240)
T 2onk_A 2 FLKVRAEKRLGN-----FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIG 73 (240)
T ss_dssp CEEEEEEEEETT-----EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCB
T ss_pred EEEEEEEEEeCC-----EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEE
Confidence 689999999952 59999999999 999999999999999999999999999999999999987643 2467899
Q ss_pred EEecCCCCccc-cHHHHHhcCCCCCC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHh
Q 041277 441 LVSQEPALFAT-SIKENILFGKEDAS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAII 515 (1133)
Q Consensus 441 ~v~Q~~~l~~~-ti~eni~~~~~~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~ 515 (1133)
||||++.+|+. |++||+.++..... .+++.++++..++ +........+||||||||++|||||+
T Consensus 74 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgGqkqRv~lAral~ 142 (240)
T 2onk_A 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGI-----------AHLLDRKPARLSGGERQRVALARALV 142 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTC-----------TTTTTCCGGGSCHHHHHHHHHHHHHT
T ss_pred EEcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCC-----------HHHhcCChhhCCHHHHHHHHHHHHHH
Confidence 99999999876 99999999753222 1223333433333 33334455689999999999999999
Q ss_pred hCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 516 KAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 516 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
++|++||||||||+||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 143 ~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 216 (240)
T 2onk_A 143 IQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFS 216 (240)
T ss_dssp TCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999998874 38999999999998765 99999999999999999999875
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-45 Score=415.93 Aligned_cols=219 Identities=26% Similarity=0.429 Sum_probs=185.4
Q ss_pred cEEEEEEEEEcCCCCCCc--cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCC---HHH
Q 041277 360 EVEFKCVQFAYPSRPESI--IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQ---LKW 434 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~--~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~---~~~ 434 (1133)
.|+++|++++|++ .. +|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+ ...
T Consensus 3 ~l~i~~l~~~y~~---~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~ 79 (353)
T 1oxx_K 3 RIIVKNVSKVFKK---GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPP 79 (353)
T ss_dssp CEEEEEEEEEEGG---GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCG
T ss_pred EEEEEeEEEEECC---EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCCh
Confidence 3899999999963 35 899999999999999999999999999999999999999999999999986521 223
Q ss_pred HhhhceEEecCCCCccc-cHHHHHhcCCCC--CC----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHH
Q 041277 435 LRSQMGLVSQEPALFAT-SIKENILFGKED--AS----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQR 507 (1133)
Q Consensus 435 ~r~~i~~v~Q~~~l~~~-ti~eni~~~~~~--~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqr 507 (1133)
.+++||||||++.+|+. ||+||+.|+... .. .+++.++++..++.++.++ ...+||||||||
T Consensus 80 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~-----------~~~~LSGGq~QR 148 (353)
T 1oxx_K 80 EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNH-----------FPRELSGAQQQR 148 (353)
T ss_dssp GGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTS-----------CGGGSCHHHHHH
T ss_pred hhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcC-----------ChhhCCHHHHHH
Confidence 46789999999999976 999999997532 12 2345556666655444333 345899999999
Q ss_pred HHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchh
Q 041277 508 IAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584 (1133)
Q Consensus 508 i~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 584 (1133)
++|||||+.+|++||||||||+||+.+++.+.+.|+++. .|+|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 149 valAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l 228 (353)
T 1oxx_K 149 VALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228 (353)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999999999999998874 38999999999998865 999999999999999999999
Q ss_pred ccccchhh
Q 041277 585 IQAESGLY 592 (1133)
Q Consensus 585 ~~~~~~~~ 592 (1133)
.+.+...|
T Consensus 229 ~~~p~~~~ 236 (353)
T 1oxx_K 229 YDNPVSIQ 236 (353)
T ss_dssp HHSCSSHH
T ss_pred HhCcccHH
Confidence 76443333
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-45 Score=415.86 Aligned_cols=217 Identities=27% Similarity=0.447 Sum_probs=184.3
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCC------CCHH
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDK------LQLK 433 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~------~~~~ 433 (1133)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+ .+..
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~ 79 (372)
T 1g29_1 3 GVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (372)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred EEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHh
Confidence 3899999999964 359999999999999999999999999999999999999999999999999866 4432
Q ss_pred HHhhhceEEecCCCCccc-cHHHHHhcCCC--CCCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHH
Q 041277 434 WLRSQMGLVSQEPALFAT-SIKENILFGKE--DASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQ 506 (1133)
Q Consensus 434 ~~r~~i~~v~Q~~~l~~~-ti~eni~~~~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 506 (1133)
+++||||||++.+|+. ||+||+.|+.. .... +++.++++..++.++.+ ....+|||||||
T Consensus 80 --~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-----------r~~~~LSGGq~Q 146 (372)
T 1g29_1 80 --DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLN-----------RKPRELSGGQRQ 146 (372)
T ss_dssp --GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTT-----------CCGGGSCHHHHH
T ss_pred --HCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhc-----------CCcccCCHHHHH
Confidence 5689999999999965 99999998632 1222 34555555555544333 334689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcch
Q 041277 507 RIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDE 583 (1133)
Q Consensus 507 ri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 583 (1133)
|++|||||+.+|++||||||||+||+.+++.+.+.|+++. .|.|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 147 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~ 226 (372)
T 1g29_1 147 RVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDE 226 (372)
T ss_dssp HHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 9999999999999999999999999999999999998874 38999999999998865 99999999999999999999
Q ss_pred hccccchhh
Q 041277 584 LIQAESGLY 592 (1133)
Q Consensus 584 l~~~~~~~~ 592 (1133)
+...+...|
T Consensus 227 l~~~p~~~~ 235 (372)
T 1g29_1 227 VYDKPANTF 235 (372)
T ss_dssp HHHSCSBHH
T ss_pred HHhCcccHH
Confidence 986443334
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-44 Score=391.19 Aligned_cols=208 Identities=21% Similarity=0.332 Sum_probs=184.4
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
-++++|++++ ++|+|+||++++||+++|+||||||||||+++|+|+++|+ |+|.++|+++.+.+...+|+++
T Consensus 4 ~l~~~~l~~~-------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i 75 (249)
T 2qi9_C 4 VMQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHR 75 (249)
T ss_dssp EEEEEEEEET-------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHE
T ss_pred EEEEEceEEE-------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceE
Confidence 3789999986 3899999999999999999999999999999999999999 9999999999888888889999
Q ss_pred eEEecCCCCccc-cHHHHHhcCCC-CCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhC
Q 041277 440 GLVSQEPALFAT-SIKENILFGKE-DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKA 517 (1133)
Q Consensus 440 ~~v~Q~~~l~~~-ti~eni~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 517 (1133)
+||+|++.+|.. |++||+.++.. ....+++.++++..++.++ ....+.+||||||||++|||||+++
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGq~qrv~lAraL~~~ 144 (249)
T 2qi9_C 76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDK-----------LGRSTNQLSGGEWQRVRLAAVVLQI 144 (249)
T ss_dssp EEECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGG-----------TTSBGGGCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhH-----------hcCChhhCCHHHHHHHHHHHHHHcC
Confidence 999999998865 99999998742 2235566666666665443 2344568999999999999999999
Q ss_pred CC-------EEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhh-cCCEEEEEeCCeEEeecCcchhcc
Q 041277 518 PR-------ILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIR-NADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 518 ~~-------illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
|+ +||||||||+||+.+++.+.+.|+++. +|+|+|++||+++.+. .||++++|++|++++.|+++++.+
T Consensus 145 p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 145 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp CTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred CCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99 999999999999999999999999874 5899999999999985 599999999999999999999875
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-43 Score=439.73 Aligned_cols=196 Identities=23% Similarity=0.343 Sum_probs=160.2
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhh
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 438 (1133)
..+...|++++|++ +.+|+|+||++++|++++|+||||||||||+++|+| |+| +|.+... +.+
T Consensus 434 ~~L~~~~ls~~yg~---~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~------~~~ 496 (986)
T 2iw3_A 434 EDLCNCEFSLAYGA---KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE------ECR 496 (986)
T ss_dssp CEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT------TSC
T ss_pred ceeEEeeEEEEECC---EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc------cee
Confidence 35888899999974 359999999999999999999999999999999996 554 5544321 124
Q ss_pred ceEEecCC-CCc-cccHHHHHhcCCCCCCHHHHHHHHHHhch-HHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHh
Q 041277 439 MGLVSQEP-ALF-ATSIKENILFGKEDASMEEVIEAAKASNA-HNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAII 515 (1133)
Q Consensus 439 i~~v~Q~~-~l~-~~ti~eni~~~~~~~~~~~~~~~~~~~~~-~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~ 515 (1133)
++|++|++ .++ ..|+.||+.+..... .+++.++++..++ .+..++.+ .+||||||||++|||||+
T Consensus 497 ~~~v~q~~~~~~~~ltv~e~l~~~~~~~-~~~v~~~L~~lgL~~~~~~~~~-----------~~LSGGqkQRvaLArAL~ 564 (986)
T 2iw3_A 497 TVYVEHDIDGTHSDTSVLDFVFESGVGT-KEAIKDKLIEFGFTDEMIAMPI-----------SALSGGWKMKLALARAVL 564 (986)
T ss_dssp EEETTCCCCCCCTTSBHHHHHHTTCSSC-HHHHHHHHHHTTCCHHHHHSBG-----------GGCCHHHHHHHHHHHHHH
T ss_pred EEEEcccccccccCCcHHHHHHHhhcCH-HHHHHHHHHHcCCChhhhcCCc-----------ccCCHHHHHHHHHHHHHh
Confidence 78999986 444 459999998621112 5677778888877 34444332 479999999999999999
Q ss_pred hCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCCeEE-eecCcchhc
Q 041277 516 KAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVM-ETGSHDELI 585 (1133)
Q Consensus 516 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~-~~g~~~~l~ 585 (1133)
.+|++|||||||++||+.+.+.+.+.|++ .|+|+|+|||+++.+.. ||+|++|++|+++ ..|+++++.
T Consensus 565 ~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~ 634 (986)
T 2iw3_A 565 RNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFV 634 (986)
T ss_dssp TTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHH
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHH
Confidence 99999999999999999999999999988 68999999999999876 9999999999997 467766553
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-44 Score=394.89 Aligned_cols=210 Identities=26% Similarity=0.365 Sum_probs=170.6
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhc--cCCCccEEEECCeecCCCCHHHH-hh
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRF--YAPLGGEIILDGVSIDKLQLKWL-RS 437 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~--~~~~~G~i~~~g~~~~~~~~~~~-r~ 437 (1133)
|+++||+|+|++ .++|+|+||++++||+++|+||||||||||+++|+|+ ++|++|+|.++|.++.+.+.... +.
T Consensus 4 l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (250)
T 2d2e_A 4 LEIRDLWASIDG---ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARK 80 (250)
T ss_dssp EEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHT
T ss_pred EEEEeEEEEECC---EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhC
Confidence 789999999964 3599999999999999999999999999999999999 89999999999999988876655 45
Q ss_pred hceEEecCCCCccc-cHHHHHhcCCC---C--CCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCC-CChHHHH
Q 041277 438 QMGLVSQEPALFAT-SIKENILFGKE---D--ASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQ-MSGGQKQ 506 (1133)
Q Consensus 438 ~i~~v~Q~~~l~~~-ti~eni~~~~~---~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~-LSgGqkq 506 (1133)
.++||+|+|.+|+. |++||+.++.. . ... +++.++++..++. .........+ |||||||
T Consensus 81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~----------~~~~~~~~~~~LSgGqkQ 150 (250)
T 2d2e_A 81 GLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWD----------ESYLSRYLNEGFSGGEKK 150 (250)
T ss_dssp TBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCC----------GGGGGSBTTCC----HHH
T ss_pred cEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCC----------hhHhcCCcccCCCHHHHH
Confidence 69999999999876 99999987421 1 111 2233333333321 1112233456 9999999
Q ss_pred HHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc--CCEEEEEeCCeEEeecCcch
Q 041277 507 RIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN--ADVIAVVQDGQVMETGSHDE 583 (1133)
Q Consensus 507 ri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~--~d~i~~l~~G~i~~~g~~~~ 583 (1133)
|++|||||+++|++||||||||+||+.+++.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|+++.
T Consensus 151 rv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 151 RNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPEL 230 (250)
T ss_dssp HHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHHH
T ss_pred HHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHHH
Confidence 9999999999999999999999999999999999999875 48999999999999876 59999999999999999873
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-43 Score=387.95 Aligned_cols=216 Identities=22% Similarity=0.302 Sum_probs=177.7
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhc--cCCCccEEEECCeecCCCCHHHH-h
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRF--YAPLGGEIILDGVSIDKLQLKWL-R 436 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~--~~~~~G~i~~~g~~~~~~~~~~~-r 436 (1133)
.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|.++...+.... +
T Consensus 20 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 96 (267)
T 2zu0_C 20 MLSIKDLHVSVED---KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG 96 (267)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhh
Confidence 5999999999963 3599999999999999999999999999999999999 57999999999999988776655 4
Q ss_pred hhceEEecCCCCccc-cHHHHHhcCC---------CCCCHHHHHHHHHHhchHHHHHhCCCccccc-ccCCCC-CCChHH
Q 041277 437 SQMGLVSQEPALFAT-SIKENILFGK---------EDASMEEVIEAAKASNAHNFIRQLPQQYDTQ-VGERGV-QMSGGQ 504 (1133)
Q Consensus 437 ~~i~~v~Q~~~l~~~-ti~eni~~~~---------~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~-~~~~g~-~LSgGq 504 (1133)
+.|+||+|+|.+|+. |++||+.++. +..+.++..+ .+.+.++.+ |+++. ...... +|||||
T Consensus 97 ~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~~~LSgGq 169 (267)
T 2zu0_C 97 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQD-----LMEEKIALL--KMPEDLLTRSVNVGFSGGE 169 (267)
T ss_dssp HTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHH-----HHHHHHHHT--TCCTTTTTSBTTTTCCHHH
T ss_pred CCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHH-----HHHHHHHHc--CCChhHhcCCcccCCCHHH
Confidence 469999999999876 9999987531 1112222111 122333333 33322 233333 599999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc--CCEEEEEeCCeEEeecCc
Q 041277 505 KQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN--ADVIAVVQDGQVMETGSH 581 (1133)
Q Consensus 505 kqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~--~d~i~~l~~G~i~~~g~~ 581 (1133)
|||++|||||+.+|++||||||||+||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|++
T Consensus 170 ~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~ 249 (267)
T 2zu0_C 170 KKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDF 249 (267)
T ss_dssp HHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECT
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCH
Confidence 999999999999999999999999999999999999998874 48999999999998875 899999999999999999
Q ss_pred chhc
Q 041277 582 DELI 585 (1133)
Q Consensus 582 ~~l~ 585 (1133)
+++.
T Consensus 250 ~~~~ 253 (267)
T 2zu0_C 250 TLVK 253 (267)
T ss_dssp THHH
T ss_pred HHHh
Confidence 8764
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-44 Score=436.35 Aligned_cols=193 Identities=22% Similarity=0.310 Sum_probs=153.3
Q ss_pred EEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEE---------EECCeecCCCCHHH
Q 041277 364 KCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI---------ILDGVSIDKLQLKW 434 (1133)
Q Consensus 364 ~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i---------~~~g~~~~~~~~~~ 434 (1133)
+|++++|+++ ..+|+|+| ++++||+++|+||||||||||+++|+|+++|++|++ .++|.++.+.....
T Consensus 95 ~~ls~~yg~~--~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~ 171 (607)
T 3bk7_A 95 EDCVHRYGVN--AFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERL 171 (607)
T ss_dssp GSEEEECSTT--CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHH
T ss_pred CCeEEEECCC--CeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhh
Confidence 8999999643 24899999 999999999999999999999999999999999996 45665543321111
Q ss_pred --HhhhceEEecCCC----CccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHH
Q 041277 435 --LRSQMGLVSQEPA----LFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRI 508 (1133)
Q Consensus 435 --~r~~i~~v~Q~~~----l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 508 (1133)
.+..+++++|+.. ++.+|++||+..... .+++.++++..++.+.. .....+||||||||+
T Consensus 172 ~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~---~~~~~~~L~~lgL~~~~-----------~~~~~~LSGGekQRv 237 (607)
T 3bk7_A 172 KNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDE---VGKFEEVVKELELENVL-----------DRELHQLSGGELQRV 237 (607)
T ss_dssp HHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCC---SSCHHHHHHHTTCTTGG-----------GSBGGGCCHHHHHHH
T ss_pred hhhhcceEEeechhhhchhhccccHHHHhhhhHH---HHHHHHHHHHcCCCchh-----------CCChhhCCHHHHHHH
Confidence 1235889998743 344699999975321 23345555555553322 233458999999999
Q ss_pred HHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCC
Q 041277 509 AIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDG 573 (1133)
Q Consensus 509 ~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G 573 (1133)
+|||||+++|++||||||||+||+.++..+.+.|+++. +|+|+|+|||+++.+.. ||+|++|+++
T Consensus 238 aIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 238 AIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp HHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred HHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 99999999999999999999999999999999998874 48999999999998876 9999999753
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-44 Score=388.65 Aligned_cols=207 Identities=18% Similarity=0.334 Sum_probs=178.0
Q ss_pred EEEEEEEEEcCCC-CCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 361 VEFKCVQFAYPSR-PESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 361 i~~~~v~~~y~~~-~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
|+++|++++|++. ..+++|+|+||+++ ||+++|+||||||||||+++|+|++ |++|+|.++|+++.+. .. |++|
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i 76 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY 76 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence 6899999999641 01359999999999 9999999999999999999999999 9999999999998754 23 6789
Q ss_pred e-EEecCCCCccccHHHHHhcCCC--CCCHHHHHHHHHHhchHHHHHhCCCccc-ccccCCCCCCChHHHHHHHHHHHHh
Q 041277 440 G-LVSQEPALFATSIKENILFGKE--DASMEEVIEAAKASNAHNFIRQLPQQYD-TQVGERGVQMSGGQKQRIAIARAII 515 (1133)
Q Consensus 440 ~-~v~Q~~~l~~~ti~eni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGqkqri~iARal~ 515 (1133)
+ ||||+|.+ ..|++||+.++.+ ....+++.++++..++ + ......+.+||||||||++|||||+
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~~LSgGqkqRv~lAraL~ 144 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKALKL-----------GEEILRRKLYKLSAGQSVLVRTSLALA 144 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTC-----------CGGGGGSBGGGSCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHcCC-----------ChhHhcCChhhCCHHHHHHHHHHHHHH
Confidence 9 99999998 8899999987532 2334555555555443 3 3445566799999999999999999
Q ss_pred hCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CC-EEEEEeCCeEEeecCcchhcc
Q 041277 516 KAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-AD-VIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 516 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d-~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
++|++|||||||++||+.+++.+.+.|+++.+ |+|++||+++.+.. || ++++|++|++++.|+++++.+
T Consensus 145 ~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 145 SQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLE 215 (263)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHT
T ss_pred hCCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHh
Confidence 99999999999999999999999999988754 99999999998864 99 999999999999999999875
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-43 Score=385.59 Aligned_cols=200 Identities=26% Similarity=0.408 Sum_probs=170.5
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.|+++|++++|+. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|. ++++|
T Consensus 4 ~l~i~~l~~~y~~--~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i 68 (253)
T 2nq2_C 4 ALSVENLGFYYQA--ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSI 68 (253)
T ss_dssp EEEEEEEEEEETT--TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCE
T ss_pred eEEEeeEEEEeCC--CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccE
Confidence 3899999999962 13599999999999999999999999999999999999999999998 24579
Q ss_pred eEEecCCCCc-cccHHHHHhcCCCC-------CC---HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHH
Q 041277 440 GLVSQEPALF-ATSIKENILFGKED-------AS---MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRI 508 (1133)
Q Consensus 440 ~~v~Q~~~l~-~~ti~eni~~~~~~-------~~---~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 508 (1133)
|||||++.+| ..|++||+.++... .. .+++.++++..++.+ .....+.+||||||||+
T Consensus 69 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGq~qrv 137 (253)
T 2nq2_C 69 GFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTH-----------LAKREFTSLSGGQRQLI 137 (253)
T ss_dssp EEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGG-----------GTTSBGGGSCHHHHHHH
T ss_pred EEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChH-----------HhcCChhhCCHHHHHHH
Confidence 9999999887 56999999986420 11 133445555554433 23344568999999999
Q ss_pred HHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-C-CCeEEEEecCcchhh-cCCEEEEEeCCeEEeecCcchhc
Q 041277 509 AIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-V-GRTTIIIAHRLSTIR-NADVIAVVQDGQVMETGSHDELI 585 (1133)
Q Consensus 509 ~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~-~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 585 (1133)
+|||||+.+|++||||||||+||+.+++.+.+.|+++. + |+|+|++||+++.+. .||++++|++|+ ++.|+++++.
T Consensus 138 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~ 216 (253)
T 2nq2_C 138 LIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNIL 216 (253)
T ss_dssp HHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHC
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHh
Confidence 99999999999999999999999999999999998875 3 899999999999985 499999999999 9999999987
Q ss_pred c
Q 041277 586 Q 586 (1133)
Q Consensus 586 ~ 586 (1133)
+
T Consensus 217 ~ 217 (253)
T 2nq2_C 217 T 217 (253)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-43 Score=426.47 Aligned_cols=196 Identities=22% Similarity=0.306 Sum_probs=151.6
Q ss_pred EEE-EEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEE---------EECCeecCCC
Q 041277 361 VEF-KCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI---------ILDGVSIDKL 430 (1133)
Q Consensus 361 i~~-~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i---------~~~g~~~~~~ 430 (1133)
.++ +|++++|++. ..+|+|+| +|++||+++|+||||||||||+++|+|+++|++|++ .++|.++...
T Consensus 21 ~~~~~~ls~~yg~~--~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~ 97 (538)
T 1yqt_A 21 EQLEEDCVHRYGVN--AFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNY 97 (538)
T ss_dssp ---CCCEEEECSTT--CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHH
T ss_pred hhHhcCcEEEECCc--cccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHH
Confidence 455 5899999743 24899999 999999999999999999999999999999999995 3566554322
Q ss_pred CHHH--HhhhceEEecCCCCc----cccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHH
Q 041277 431 QLKW--LRSQMGLVSQEPALF----ATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQ 504 (1133)
Q Consensus 431 ~~~~--~r~~i~~v~Q~~~l~----~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 504 (1133)
.... .+..+++++|+..++ .+|+.||+..... .+++.++++..++.++ ......+|||||
T Consensus 98 ~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~---~~~~~~~l~~lgl~~~-----------~~~~~~~LSgGe 163 (538)
T 1yqt_A 98 FEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADE---TGKLEEVVKALELENV-----------LEREIQHLSGGE 163 (538)
T ss_dssp HHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHCS---SSCHHHHHHHTTCTTT-----------TTSBGGGCCHHH
T ss_pred HHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhhH---HHHHHHHHHHcCCChh-----------hhCChhhCCHHH
Confidence 1111 123588999975443 3589999864221 1234555555554322 223345899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCC
Q 041277 505 KQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDG 573 (1133)
Q Consensus 505 kqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G 573 (1133)
|||++|||||+.+|++||||||||+||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|
T Consensus 164 kQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 164 LQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp HHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 999999999999999999999999999999999999998874 48999999999999876 9999999753
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-42 Score=367.81 Aligned_cols=194 Identities=19% Similarity=0.344 Sum_probs=164.5
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.|+++|++++|++ ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..|++|
T Consensus 10 ~l~~~~ls~~y~~----~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i 80 (214)
T 1sgw_A 10 KLEIRDLSVGYDK----PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKI 80 (214)
T ss_dssp EEEEEEEEEESSS----EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGE
T ss_pred eEEEEEEEEEeCC----eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcE
Confidence 5899999999963 4999999999999999999999999999999999999999999999999886 257889
Q ss_pred eEEecCCCCccc-cHHHHHhcCCC----CCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHH
Q 041277 440 GLVSQEPALFAT-SIKENILFGKE----DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAI 514 (1133)
Q Consensus 440 ~~v~Q~~~l~~~-ti~eni~~~~~----~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal 514 (1133)
+||||+|.+|.. |++||+.++.. ....+++.++++..+ ++.. ++.+.+||||||||++|||||
T Consensus 81 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~-~~~~~~LSgGqkqrv~laraL 148 (214)
T 1sgw_A 81 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVE-----------VLDL-KKKLGELSQGTIRRVQLASTL 148 (214)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTT-----------CCCT-TSBGGGSCHHHHHHHHHHHHT
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcC-----------CCcC-CCChhhCCHHHHHHHHHHHHH
Confidence 999999999876 99999987521 122444555544443 3344 556779999999999999999
Q ss_pred hhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeE
Q 041277 515 IKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQV 575 (1133)
Q Consensus 515 ~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i 575 (1133)
+.+|++|||||||++||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||+|+ +.+|+|
T Consensus 149 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~-~~~~~~ 210 (214)
T 1sgw_A 149 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLH-KYSTKI 210 (214)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGG-GGBC--
T ss_pred HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE-EeCCcc
Confidence 99999999999999999999999999998875 48999999999999887 66655 556665
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-41 Score=408.59 Aligned_cols=191 Identities=20% Similarity=0.302 Sum_probs=146.9
Q ss_pred EEEEEcCCCCCCccccceeEEe-eCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEE-----------EECCeecCCCCH
Q 041277 365 CVQFAYPSRPESIIFKDFCLTI-PAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI-----------ILDGVSIDKLQL 432 (1133)
Q Consensus 365 ~v~~~y~~~~~~~~l~~i~l~i-~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i-----------~~~g~~~~~~~~ 432 (1133)
+++.+|+.+ -++-..|.+ ++||++||+||||||||||+++|+|+++|++|+| .++|.++..+..
T Consensus 4 ~~~~~~~~~----~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~ 79 (538)
T 3ozx_A 4 EVIHRYKVN----GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFK 79 (538)
T ss_dssp CEEEESSTT----SCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHH
T ss_pred CCceecCCC----ceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHH
Confidence 467789754 355555655 4899999999999999999999999999999998 577766543211
Q ss_pred HHHh------hhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHH
Q 041277 433 KWLR------SQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQ 506 (1133)
Q Consensus 433 ~~~r------~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 506 (1133)
.... ..+.++.|.+.++.+|+++++...... +++.++++..++.+.. .....+|||||||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~---~~~~~~l~~l~l~~~~-----------~~~~~~LSgGe~Q 145 (538)
T 3ozx_A 80 ELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDER---GKKDEVKELLNMTNLW-----------NKDANILSGGGLQ 145 (538)
T ss_dssp HHHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHCCS---SCHHHHHHHTTCGGGT-----------TSBGGGCCHHHHH
T ss_pred HHhhcccchhhccchhhhhhhhccCcHHHHhhcchhH---HHHHHHHHHcCCchhh-----------cCChhhCCHHHHH
Confidence 1111 224455566667778999987643221 2344555555543322 2234589999999
Q ss_pred HHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-CCEEEEEeCC
Q 041277 507 RIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDG 573 (1133)
Q Consensus 507 ri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G 573 (1133)
|++|||||+.+|+|||||||||+||+.+...+.+.|+++.+|+|+|+|||+++.+.. ||+|++|++|
T Consensus 146 rv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~ 213 (538)
T 3ozx_A 146 RLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGE 213 (538)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCC
Confidence 999999999999999999999999999999999999998779999999999999876 9999999764
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-40 Score=412.01 Aligned_cols=201 Identities=26% Similarity=0.400 Sum_probs=131.8
Q ss_pred CccccceeEEeeCCCEEEEEcCCCCcHHHHH---------------------HHHHhccCCC-------ccEEEECCeec
Q 041277 376 SIIFKDFCLTIPAGKTVALVGGSGSGKSTVI---------------------ALLQRFYAPL-------GGEIILDGVSI 427 (1133)
Q Consensus 376 ~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll---------------------~~l~~~~~~~-------~G~i~~~g~~~ 427 (1133)
..+|+||||+|++||++||+||||||||||+ +++.++..|+ .|.|.++|.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 3489999999999999999999999999998 8899999998 45566666554
Q ss_pred CCCCHHHHhhhceEEecCCCCc--------------------cccHHHHHhcCCC-CCC--HHHH-----HHHHHHhchH
Q 041277 428 DKLQLKWLRSQMGLVSQEPALF--------------------ATSIKENILFGKE-DAS--MEEV-----IEAAKASNAH 479 (1133)
Q Consensus 428 ~~~~~~~~r~~i~~v~Q~~~l~--------------------~~ti~eni~~~~~-~~~--~~~~-----~~~~~~~~~~ 479 (1133)
... .++.+++|+|.+.++ ..|++||+.+... ... ..+. .++.+..
T Consensus 111 ~~~----~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 183 (670)
T 3ux8_A 111 SRN----PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL--- 183 (670)
T ss_dssp --------CCBHHHHTTCC-------------------------CC--------------------------CHHHH---
T ss_pred hcc----chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHH---
Confidence 322 234566666654332 3489999987421 000 0111 1111111
Q ss_pred HHHHhCCCccccc-ccCCCCCCChHHHHHHHHHHHHhhCCC--EEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEe
Q 041277 480 NFIRQLPQQYDTQ-VGERGVQMSGGQKQRIAIARAIIKAPR--ILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIA 555 (1133)
Q Consensus 480 ~~i~~l~~g~~t~-~~~~g~~LSgGqkqri~iARal~~~~~--illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~it 555 (1133)
+.++.+ |++.. ......+||||||||++|||||+.+|+ +||||||||+||+.+...+.+.|+++. +|+|+|+||
T Consensus 184 ~~l~~~--gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vt 261 (670)
T 3ux8_A 184 GFLQNV--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVE 261 (670)
T ss_dssp HHHHHT--TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHc--CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 123333 22221 234556899999999999999999998 999999999999999999999998874 589999999
Q ss_pred cCcchhhcCCEEEEE------eCCeEEeecCcchhc
Q 041277 556 HRLSTIRNADVIAVV------QDGQVMETGSHDELI 585 (1133)
Q Consensus 556 H~~~~~~~~d~i~~l------~~G~i~~~g~~~~l~ 585 (1133)
|+++.+..||+|++| ++|++++.|+++++.
T Consensus 262 Hd~~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 262 HDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp CCHHHHHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred CCHHHHhhCCEEEEecccccccCCEEEEecCHHHHh
Confidence 999988889999999 788888888776654
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-39 Score=391.98 Aligned_cols=195 Identities=22% Similarity=0.313 Sum_probs=145.8
Q ss_pred EEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEE-----------EECCeecCCCCHH
Q 041277 365 CVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI-----------ILDGVSIDKLQLK 433 (1133)
Q Consensus 365 ~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i-----------~~~g~~~~~~~~~ 433 (1133)
|++++|+.+ ...|++++ ++++||++||+||||||||||+++|+|+++|++|+| .++|.++..+...
T Consensus 82 ~~~~~Y~~~--~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~ 158 (608)
T 3j16_B 82 HVTHRYSAN--SFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTK 158 (608)
T ss_dssp TEEEECSTT--SCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHH
T ss_pred CeEEEECCC--ceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhH
Confidence 568889743 24677777 689999999999999999999999999999999998 3344333322222
Q ss_pred HHhhhce--EEecCCCC----cc---ccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHH
Q 041277 434 WLRSQMG--LVSQEPAL----FA---TSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQ 504 (1133)
Q Consensus 434 ~~r~~i~--~v~Q~~~l----~~---~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 504 (1133)
.+.+.+. +.+|.... +. .++.+++.... ....+++.++++..++.++. .....+|||||
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~-~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGe 226 (608)
T 3j16_B 159 MLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRM-EKSPEDVKRYIKILQLENVL-----------KRDIEKLSGGE 226 (608)
T ss_dssp HHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHC-CSCHHHHHHHHHHHTCTGGG-----------GSCTTTCCHHH
T ss_pred HHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhh-hhHHHHHHHHHHHcCCcchh-----------CCChHHCCHHH
Confidence 2333333 23332211 11 25666665432 23445666666666554332 33446899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCe
Q 041277 505 KQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQ 574 (1133)
Q Consensus 505 kqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~ 574 (1133)
|||++|||||+++|++||||||||+||+.+...+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|.
T Consensus 227 ~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~ 298 (608)
T 3j16_B 227 LQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVP 298 (608)
T ss_dssp HHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCT
T ss_pred HHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 999999999999999999999999999999999999999875 48999999999999876 99999998653
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-38 Score=350.94 Aligned_cols=240 Identities=18% Similarity=0.241 Sum_probs=193.6
Q ss_pred HhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcccccccccccEEEEEEEEEc
Q 041277 291 MYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAY 370 (1133)
Q Consensus 291 ~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y 370 (1133)
..+..+-+.+.+|+.+..+ ..++..+...+..++++..+.+|+.++++.+++.... . . ......+.|+++||+|+|
T Consensus 36 a~~~~~~~n~~afl~~~~q-~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~-~-~-~~~~~~~~i~~~~vs~~y 111 (305)
T 2v9p_A 36 ALAAGSDSNARAFLATNSQ-AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATG-E-G-SWKSILTFFNYQNIELIT 111 (305)
T ss_dssp HHTTTTCHHHHHHTTCTTH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCS-S-C-CTHHHHHHHHHTTCCHHH
T ss_pred HHhcCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCC-C-C-cccccCCeEEEEEEEEEc
Confidence 3445556677777766555 4678888889999999999999999999865432111 0 1 111123458999999999
Q ss_pred CCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCcc
Q 041277 371 PSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFA 450 (1133)
Q Consensus 371 ~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~ 450 (1133)
+ .++|+|+||+|++|++++|+||||||||||+++|+|++ +|+| ++|++|++.+|.
T Consensus 112 ~----~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~lf~ 166 (305)
T 2v9p_A 112 F----INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSHFWL 166 (305)
T ss_dssp H----HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSGGGG
T ss_pred C----hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCcccccc
Confidence 6 35999999999999999999999999999999999999 7988 467899999999
Q ss_pred ccHHH-HHhcCCCCCCHHHHHHHHHHhchHHHHHh-CCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCccc
Q 041277 451 TSIKE-NILFGKEDASMEEVIEAAKASNAHNFIRQ-LPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATS 528 (1133)
Q Consensus 451 ~ti~e-ni~~~~~~~~~~~~~~~~~~~~~~~~i~~-l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts 528 (1133)
+|++| ||.++. +.++ +++++++. +|+|++ |.+|||||||| |||++++|+||| ||
T Consensus 167 ~ti~~~ni~~~~-~~~~----------~~~~~i~~~L~~gld------g~~LSgGqkQR---ARAll~~p~iLl----Ts 222 (305)
T 2v9p_A 167 ASLADTRAALVD-DATH----------ACWRYFDTYLRNALD------GYPVSIDRKHK---AAVQIKAPPLLV----TS 222 (305)
T ss_dssp GGGTTCSCEEEE-EECH----------HHHHHHHHTTTGGGG------TCCEECCCSSC---CCCEECCCCEEE----EE
T ss_pred ccHHHHhhccCc-cccH----------HHHHHHHHHhHccCC------ccCcCHHHHHH---HHHHhCCCCEEE----EC
Confidence 99998 999863 3332 34567777 899987 67999999999 999999999999 99
Q ss_pred CCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhccccchhhHHHHHhhcC
Q 041277 529 ALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQTT 601 (1133)
Q Consensus 529 ~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~ 601 (1133)
+||+++++.+.. +|||++.+..||+| +|++|++++.|+|+++ ++.|++++..+..
T Consensus 223 ~LD~~~~~~i~~-------------ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el----~~~y~~l~~~~~~ 277 (305)
T 2v9p_A 223 NIDVQAEDRYLY-------------LHSRVQTFRFEQPC-TDESGEQPFNITDADW----KSFFVRLWGRLDL 277 (305)
T ss_dssp SSCSTTCGGGGG-------------GTTTEEEEECCCCC-CCC---CCCCCCHHHH----HHHHHHSTTTTTC
T ss_pred CCCHHHHHHHHH-------------HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH----HHHHHHHHHHccc
Confidence 999999888752 29999999999999 9999999999999998 5788888776543
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-34 Score=351.29 Aligned_cols=199 Identities=23% Similarity=0.267 Sum_probs=165.3
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.++++|++++|++ ..|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++ .+|
T Consensus 357 ~l~~~~l~~~~~~----~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~-------------~~i 419 (607)
T 3bk7_A 357 LVEYPRLVKDYGS----FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-------------LTV 419 (607)
T ss_dssp EEEECCEEEECSS----CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC-------------CCE
T ss_pred EEEEeceEEEecc----eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe-------------eEE
Confidence 5899999999963 26899999999999999999999999999999999999999999862 369
Q ss_pred eEEecCCCC-ccccHHHHHhcC-CCC-CCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhh
Q 041277 440 GLVSQEPAL-FATSIKENILFG-KED-ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIK 516 (1133)
Q Consensus 440 ~~v~Q~~~l-~~~ti~eni~~~-~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~ 516 (1133)
||+||++.+ +..||.||+... ... ...+.+.++++..++ .........+||||||||++|||||++
T Consensus 420 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSGGe~QRv~iAraL~~ 488 (607)
T 3bk7_A 420 AYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGI-----------IDLYDRNVEDLSGGELQRVAIAATLLR 488 (607)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTC-----------TTTTTSBGGGCCHHHHHHHHHHHHHTS
T ss_pred EEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCC-----------chHhcCChhhCCHHHHHHHHHHHHHHh
Confidence 999999876 466999998753 110 012223333333332 223344456899999999999999999
Q ss_pred CCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeC--CeEEeecCcchhcc
Q 041277 517 APRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQD--GQVMETGSHDELIQ 586 (1133)
Q Consensus 517 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~--G~i~~~g~~~~l~~ 586 (1133)
+|++|||||||++||+.++..+.+.|+++. .|+|+|+|||+++.+.. ||||++|++ |++...|++++++.
T Consensus 489 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 489 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 999999999999999999999999999874 58999999999999875 999999986 88888999999875
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=348.88 Aligned_cols=199 Identities=23% Similarity=0.262 Sum_probs=164.8
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.++++|++++|++ ..|+++||++++||++||+||||||||||+++|+|+++|++|+|.++ .+|
T Consensus 287 ~l~~~~l~~~~~~----~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~-------------~~i 349 (538)
T 1yqt_A 287 LVTYPRLVKDYGS----FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWD-------------LTV 349 (538)
T ss_dssp EEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCC-------------CCE
T ss_pred EEEEeeEEEEECC----EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC-------------ceE
Confidence 5899999999963 26899999999999999999999999999999999999999999862 369
Q ss_pred eEEecCCCC-ccccHHHHHhcC-CCC-CCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhh
Q 041277 440 GLVSQEPAL-FATSIKENILFG-KED-ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIK 516 (1133)
Q Consensus 440 ~~v~Q~~~l-~~~ti~eni~~~-~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~ 516 (1133)
|||||++.. +..||.||+... .+. ...+.+.++++.. |+.........+||||||||++|||||+.
T Consensus 350 ~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSGGe~qrv~lAraL~~ 418 (538)
T 1yqt_A 350 AYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPL-----------GIIDLYDREVNELSGGELQRVAIAATLLR 418 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTT-----------TCGGGTTSBGGGCCHHHHHHHHHHHHHTS
T ss_pred EEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHc-----------CChhhhcCChhhCCHHHHHHHHHHHHHHh
Confidence 999999876 456999988643 110 1122222222222 23333445567899999999999999999
Q ss_pred CCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeC--CeEEeecCcchhcc
Q 041277 517 APRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQD--GQVMETGSHDELIQ 586 (1133)
Q Consensus 517 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~--G~i~~~g~~~~l~~ 586 (1133)
+|++|||||||++||+.++..+.+.|+++. .|+|+|+|||+++.+.. ||||++|++ |+++..|++++++.
T Consensus 419 ~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 419 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 999999999999999999999999999874 48999999999999875 999999986 78889999998865
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-34 Score=342.25 Aligned_cols=201 Identities=21% Similarity=0.226 Sum_probs=165.6
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhh
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 438 (1133)
..++++|++++|++ ..|++.||++++||+++|+||||||||||+++|+|+++|++|+|.+++. .
T Consensus 268 ~~l~~~~l~~~~~~----~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~ 331 (538)
T 3ozx_A 268 TKMKWTKIIKKLGD----FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQ------------I 331 (538)
T ss_dssp EEEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCC------------C
T ss_pred ceEEEcceEEEECC----EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCe------------e
Confidence 35889999999964 3588889999999999999999999999999999999999999998763 5
Q ss_pred ceEEecCCCC-ccccHHHHHhcCCCC---CCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHH
Q 041277 439 MGLVSQEPAL-FATSIKENILFGKED---ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAI 514 (1133)
Q Consensus 439 i~~v~Q~~~l-~~~ti~eni~~~~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal 514 (1133)
++|+||++.. +..||+||+.+.... ...+.+.++++..++. ........+||||||||++|||||
T Consensus 332 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSGGq~QRv~iAraL 400 (538)
T 3ozx_A 332 LSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLH-----------RLLESNVNDLSGGELQKLYIAATL 400 (538)
T ss_dssp EEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGG-----------GCTTSBGGGCCHHHHHHHHHHHHH
T ss_pred eEeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCH-----------HHhcCChhhCCHHHHHHHHHHHHH
Confidence 8999999865 467999999864221 1222334444444433 233445568999999999999999
Q ss_pred hhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeC--CeEEeecCcchhcc
Q 041277 515 IKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQD--GQVMETGSHDELIQ 586 (1133)
Q Consensus 515 ~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~--G~i~~~g~~~~l~~ 586 (1133)
+++|++|||||||++||+.++..+.+.|+++. .|+|+|+|||+++.+.. ||||++|++ |++...+++.++..
T Consensus 401 ~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~~ 477 (538)
T 3ozx_A 401 AKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLKT 477 (538)
T ss_dssp HSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHHH
Confidence 99999999999999999999999999999874 48999999999999876 999999986 56667777776643
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-34 Score=318.77 Aligned_cols=169 Identities=36% Similarity=0.537 Sum_probs=145.2
Q ss_pred hHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCC
Q 041277 961 MTTDIAKGSDAVGSVFAVMDRYTKIEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSG 1040 (1133)
Q Consensus 961 ~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SG 1040 (1133)
.+.+++.+..+++|++++++.+++..... ...+.+...|.|+|+||+|+|++ +.++|+||||+|++||++|||||||
T Consensus 14 ~~~~~~~~~~~~~ri~~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~vs~~y~~--~~~vL~~isl~i~~Ge~vaivG~sG 90 (306)
T 3nh6_A 14 LVPRGSHMFIDMENMFDLLKEETEVKDLP-GAGPLRFQKGRIEFENVHFSYAD--GRETLQDVSFTVMPGQTLALVGPSG 90 (306)
T ss_dssp -----CCTTCCHHHHHHHHHHHHSCCCCT-TCBCCCCSSCCEEEEEEEEESST--TCEEEEEEEEEECTTCEEEEESSSC
T ss_pred cchhHHHHHHHHHHHHHHHhCCccccccc-cccccCCCCCeEEEEEEEEEcCC--CCceeeeeeEEEcCCCEEEEECCCC
Confidence 45677888899999999998765543211 11112234588999999999963 3469999999999999999999999
Q ss_pred CCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcch
Q 041277 1041 SGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANA 1120 (1133)
Q Consensus 1041 SGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l 1120 (1133)
||||||+++|+|+|+|++|+|++||+|+++++.+++|++|++|||+|.||++||+|||.+|.+ ..+++++++|++.+++
T Consensus 91 sGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~-~~~~~~~~~~~~~~~l 169 (306)
T 3nh6_A 91 AGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRV-TAGNDEVEAAAQAAGI 169 (306)
T ss_dssp HHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTST-TCCHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcc-cCCHHHHHHHHHHhCc
Confidence 999999999999999999999999999999999999999999999999999999999999975 4688999999999999
Q ss_pred HHHHhhcccccCC
Q 041277 1121 HDFIAGLNEGYDT 1133 (1133)
Q Consensus 1121 ~dfI~~LP~G~dT 1133 (1133)
++++..+|+||||
T Consensus 170 ~~~i~~lp~gl~t 182 (306)
T 3nh6_A 170 HDAIMAFPEGYRT 182 (306)
T ss_dssp HHHHHHSTTGGGC
T ss_pred HHHHHhccchhhh
Confidence 9999999999986
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-33 Score=348.91 Aligned_cols=196 Identities=26% Similarity=0.403 Sum_probs=151.0
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
-|+++|++|+|++. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. .+|
T Consensus 671 mL~v~nLs~~Y~g~-~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~-----------~~I 738 (986)
T 2iw3_A 671 IVKVTNMEFQYPGT-SKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN-----------CRI 738 (986)
T ss_dssp EEEEEEEEECCTTC-SSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT-----------CCE
T ss_pred eEEEEeeEEEeCCC-CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc-----------cce
Confidence 38999999999743 245899999999999999999999999999999999999999999999862 147
Q ss_pred eEEecCCCC-----ccccHHHHHhc-------------------------------------------------------
Q 041277 440 GLVSQEPAL-----FATSIKENILF------------------------------------------------------- 459 (1133)
Q Consensus 440 ~~v~Q~~~l-----~~~ti~eni~~------------------------------------------------------- 459 (1133)
+|++|++.. ...|+++++.+
T Consensus 739 ~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e 818 (986)
T 2iw3_A 739 AYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYE 818 (986)
T ss_dssp EEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEE
T ss_pred EeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhh
Confidence 777776521 12355555432
Q ss_pred -----------CCC-----------------------------------------CCCHHHHHHHHHHhchHHHHHhCCC
Q 041277 460 -----------GKE-----------------------------------------DASMEEVIEAAKASNAHNFIRQLPQ 487 (1133)
Q Consensus 460 -----------~~~-----------------------------------------~~~~~~~~~~~~~~~~~~~i~~l~~ 487 (1133)
+.. ....+++.+.++..+
T Consensus 819 ~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lG---------- 888 (986)
T 2iw3_A 819 CSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLG---------- 888 (986)
T ss_dssp EEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTT----------
T ss_pred hhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcC----------
Confidence 100 001122223333333
Q ss_pred ccccc--ccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhc-C
Q 041277 488 QYDTQ--VGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN-A 564 (1133)
Q Consensus 488 g~~t~--~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~ 564 (1133)
++.. ......+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++. +.|+|+|||+++.+.. |
T Consensus 889 -L~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiISHD~e~v~~l~ 965 (986)
T 2iw3_A 889 -LDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEFTKNLT 965 (986)
T ss_dssp -CCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEEECSCHHHHTTTC
T ss_pred -CCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhC
Confidence 3221 13345689999999999999999999999999999999999999999988765 5799999999999865 9
Q ss_pred CEEEEEeCCeEEeecC
Q 041277 565 DVIAVVQDGQVMETGS 580 (1133)
Q Consensus 565 d~i~~l~~G~i~~~g~ 580 (1133)
|+|++|++|++++.|+
T Consensus 966 DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 966 EEVWAVKDGRMTPSGH 981 (986)
T ss_dssp CEEECCBTTBCCC---
T ss_pred CEEEEEECCEEEEeCC
Confidence 9999999999988774
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=6.4e-33 Score=335.98 Aligned_cols=198 Identities=23% Similarity=0.361 Sum_probs=162.3
Q ss_pred EEEEEEcCCCCCCccccceeEEeeCC-----CEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhh
Q 041277 364 KCVQFAYPSRPESIIFKDFCLTIPAG-----KTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438 (1133)
Q Consensus 364 ~~v~~~y~~~~~~~~l~~i~l~i~~g-----~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 438 (1133)
++++|+|++. ..+++|+||++++| |+++|+||||||||||+++|+|+++|++|+. +. +..
T Consensus 350 ~~~~~~y~~~--~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~ 414 (608)
T 3j16_B 350 ASRAFSYPSL--KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLN 414 (608)
T ss_dssp SSSCCEECCE--EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCC
T ss_pred cceeEEecCc--ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCc
Confidence 5678888742 34799999999998 8899999999999999999999999999972 11 236
Q ss_pred ceEEecCCCC-ccccHHHHHhcCCC--CCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHh
Q 041277 439 MGLVSQEPAL-FATSIKENILFGKE--DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAII 515 (1133)
Q Consensus 439 i~~v~Q~~~l-~~~ti~eni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~ 515 (1133)
++|+||++.. |..|+++|+..... ....+...++++..++. ........+||||||||++|||||+
T Consensus 415 i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~-----------~~~~~~~~~LSGGqkQRv~iAraL~ 483 (608)
T 3j16_B 415 VSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRID-----------DIIDQEVQHLSGGELQRVAIVLALG 483 (608)
T ss_dssp EEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTST-----------TTSSSBSSSCCHHHHHHHHHHHHTT
T ss_pred EEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCCh-----------hhhcCChhhCCHHHHHHHHHHHHHH
Confidence 9999999754 67799999864322 12333344444444432 2234455689999999999999999
Q ss_pred hCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeC--CeEEeecCcchhccc
Q 041277 516 KAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQD--GQVMETGSHDELIQA 587 (1133)
Q Consensus 516 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~--G~i~~~g~~~~l~~~ 587 (1133)
.+|++|||||||++||+.+...+.+.|+++. .|+|+|+|||+++.+.. ||||++|++ |+++..|++++++..
T Consensus 484 ~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 484 IPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp SCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred hCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 9999999999999999999999999998863 48999999999999876 999999996 999999999999873
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-31 Score=331.38 Aligned_cols=200 Identities=25% Similarity=0.402 Sum_probs=147.1
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHH----------------------hccCCCccEEEECCeecCCCCHHH
Q 041277 377 IIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQ----------------------RFYAPLGGEIILDGVSIDKLQLKW 434 (1133)
Q Consensus 377 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~----------------------~~~~~~~G~i~~~g~~~~~~~~~~ 434 (1133)
.+|+|+||+|++||++||+||||||||||+++|+ |+. +.+|.|.+++.++...+...
T Consensus 336 ~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~-~~~~~i~~~~~~~~~~~~~~ 414 (670)
T 3ux8_A 336 HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLE-HLDKVIDIDQSPIGRTPRSN 414 (670)
T ss_dssp TTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGG-GCSEEEECCSSCSCSSTTCC
T ss_pred cccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccc-ccCceeEeccccCCCCCCcc
Confidence 4899999999999999999999999999998764 222 33468999998876543211
Q ss_pred Hhh-----------------------------------------hceEEecCCCCc------------------------
Q 041277 435 LRS-----------------------------------------QMGLVSQEPALF------------------------ 449 (1133)
Q Consensus 435 ~r~-----------------------------------------~i~~v~Q~~~l~------------------------ 449 (1133)
.+. ..|+++|+..++
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (670)
T 3ux8_A 415 PATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTY 494 (670)
T ss_dssp HHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCCB
T ss_pred hhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhheee
Confidence 110 113333332211
Q ss_pred ---------cccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCC--
Q 041277 450 ---------ATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAP-- 518 (1133)
Q Consensus 450 ---------~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~-- 518 (1133)
..|++||+.+.......++..+. +..+.-+ +...++.+.+||||||||++|||||+++|
T Consensus 495 ~~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~---------l~~~~l~-~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~ 564 (670)
T 3ux8_A 495 KGKNIAEVLDMTVEDALDFFASIPKIKRKLET---------LYDVGLG-YMKLGQPATTLSGGEAQRVKLAAELHRRSNG 564 (670)
T ss_dssp TTBCHHHHHTSBHHHHHHHTTTCHHHHHHHHH---------HHHTTCT-TSBTTCCGGGCCHHHHHHHHHHHHHHSCCCS
T ss_pred cCCCHHHHhhCCHHHHHHHHHHhhhHHHHHHH---------HHHcCCc-hhhccCCchhCCHHHHHHHHHHHHHhhCCCC
Confidence 34888888875432111222222 2332111 12345667799999999999999999887
Q ss_pred -CEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhcCCEEEEE------eCCeEEeecCcchhccc
Q 041277 519 -RILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRNADVIAVV------QDGQVMETGSHDELIQA 587 (1133)
Q Consensus 519 -~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~~l------~~G~i~~~g~~~~l~~~ 587 (1133)
++|||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+..||+|++| ++|+|+++|+++|+.+.
T Consensus 565 p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~~ 641 (670)
T 3ux8_A 565 RTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEV 641 (670)
T ss_dssp CEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEECHHHHHTC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEEecCHHHHHhC
Confidence 5999999999999999999999998875 589999999999998889999999 89999999999999763
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.1e-30 Score=320.03 Aligned_cols=207 Identities=31% Similarity=0.492 Sum_probs=151.6
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHH---------HHHHhccCC------Ccc------EEEECCeecCCCCH----
Q 041277 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVI---------ALLQRFYAP------LGG------EIILDGVSIDKLQL---- 432 (1133)
Q Consensus 378 ~l~~i~l~i~~g~~~~ivG~sGsGKSTll---------~~l~~~~~~------~~G------~i~~~g~~~~~~~~---- 432 (1133)
.|+|+||+|++|++++|+||||||||||+ +++.+...+ .+| .+.++..++.....
T Consensus 599 ~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~a 678 (916)
T 3pih_A 599 NLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNPA 678 (916)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCHH
T ss_pred cccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccccc
Confidence 69999999999999999999999999997 333333322 223 35556555432210
Q ss_pred ------HHHh-------------------------------hhceEEecCCCCcc-------------------------
Q 041277 433 ------KWLR-------------------------------SQMGLVSQEPALFA------------------------- 450 (1133)
Q Consensus 433 ------~~~r-------------------------------~~i~~v~Q~~~l~~------------------------- 450 (1133)
..+| +..|+++|+..+++
T Consensus 679 t~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~g 758 (916)
T 3pih_A 679 TYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYKG 758 (916)
T ss_dssp HHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBTT
T ss_pred chhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhcc
Confidence 0111 23577777765543
Q ss_pred --------ccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCC---C
Q 041277 451 --------TSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAP---R 519 (1133)
Q Consensus 451 --------~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~---~ 519 (1133)
.|+.|++.|.......++..++ ++.+.-++ ..+|+.+.+|||||||||+|||||+++| +
T Consensus 759 ~~i~~vl~~tv~eal~f~~~~~~~~~~~~~---------L~~vGL~~-~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~ 828 (916)
T 3pih_A 759 KNISDILDMTVDEALEFFKNIPSIKRTLQV---------LHDVGLGY-VKLGQPATTLSGGEAQRIKLASELRKRDTGRT 828 (916)
T ss_dssp BCHHHHHSSBHHHHHHHTTTCHHHHHHHHH---------HHHTTGGG-SBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSE
T ss_pred CCHHHHhhCCHHHHHHHHhcchhHHHHHHH---------HHHcCCch-hhccCCccCCCHHHHHHHHHHHHHhhCCCCCC
Confidence 3566666554322112222233 33332232 3467888999999999999999999876 7
Q ss_pred EEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhcCCEEEEE------eCCeEEeecCcchhccccchhh
Q 041277 520 ILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRNADVIAVV------QDGQVMETGSHDELIQAESGLY 592 (1133)
Q Consensus 520 illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~~l------~~G~i~~~g~~~~l~~~~~~~~ 592 (1133)
+|||||||++||+.+++.+++.|+++. +|+|+|+|+|+++.++.||+|++| ++|+|+++|+|+|+++. .+.|
T Consensus 829 LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~-~~sy 907 (916)
T 3pih_A 829 LYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKN-PHSY 907 (916)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHSC-TTCH
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHhC-CchH
Confidence 999999999999999999999999875 589999999999999999999999 89999999999999874 4455
Q ss_pred HHH
Q 041277 593 TSL 595 (1133)
Q Consensus 593 ~~~ 595 (1133)
...
T Consensus 908 t~~ 910 (916)
T 3pih_A 908 TGR 910 (916)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-28 Score=304.12 Aligned_cols=213 Identities=25% Similarity=0.412 Sum_probs=156.4
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHH-HHhccC-------C---------------
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIAL-LQRFYA-------P--------------- 415 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~-l~~~~~-------~--------------- 415 (1133)
..++++|+++. +|+|+||+|++||++||+|+||||||||++. |.|++. |
T Consensus 501 ~~L~v~~l~~~--------~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~ 572 (842)
T 2vf7_A 501 GWLELNGVTRN--------NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAG 572 (842)
T ss_dssp CEEEEEEEEET--------TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------C
T ss_pred ceEEEEeeeec--------ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccc
Confidence 45999999861 5999999999999999999999999999996 766542 2
Q ss_pred ---Ccc-------EEEECCeecCCCCH----------HHHhhh---------ceEEecC---------------------
Q 041277 416 ---LGG-------EIILDGVSIDKLQL----------KWLRSQ---------MGLVSQE--------------------- 445 (1133)
Q Consensus 416 ---~~G-------~i~~~g~~~~~~~~----------~~~r~~---------i~~v~Q~--------------------- 445 (1133)
.+| .|.+||.++...+. +.+|+. .||.++.
T Consensus 573 ~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~ 652 (842)
T 2vf7_A 573 SARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMV 652 (842)
T ss_dssp CCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEE
T ss_pred cccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccch
Confidence 467 78999988764332 233332 2332221
Q ss_pred -CCC------------------------cc-ccHHHHHhcCCCC-----CCHHHHHHHHHHhchHHHHHhCCCcccc-cc
Q 041277 446 -PAL------------------------FA-TSIKENILFGKED-----ASMEEVIEAAKASNAHNFIRQLPQQYDT-QV 493 (1133)
Q Consensus 446 -~~l------------------------~~-~ti~eni~~~~~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~~ 493 (1133)
-.+ +. .+|.||+.+...+ ....+. ....+.++.+ |+.. ..
T Consensus 653 ~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~~~~~------~~~~~~L~~~--gL~~~~l 724 (842)
T 2vf7_A 653 ELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFADESAI------FRALDTLREV--GLGYLRL 724 (842)
T ss_dssp TTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTTSHHH------HHHHHHHHHT--TCTTSBT
T ss_pred hhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhcchHH------HHHHHHHHHc--CCCcccc
Confidence 000 11 2555555432100 000111 1123345555 3333 35
Q ss_pred cCCCCCCChHHHHHHHHHHHHhhC---CCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhcCCEEEE
Q 041277 494 GERGVQMSGGQKQRIAIARAIIKA---PRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRNADVIAV 569 (1133)
Q Consensus 494 ~~~g~~LSgGqkqri~iARal~~~---~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~~ 569 (1133)
+....+|||||||||+|||+|+++ |++|||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+..||+|++
T Consensus 725 ~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDrii~ 804 (842)
T 2vf7_A 725 GQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVLD 804 (842)
T ss_dssp TCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEE
T ss_pred cCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEE
Confidence 777789999999999999999996 69999999999999999999999998874 68999999999999977999999
Q ss_pred E------eCCeEEeecCcchhccc
Q 041277 570 V------QDGQVMETGSHDELIQA 587 (1133)
Q Consensus 570 l------~~G~i~~~g~~~~l~~~ 587 (1133)
| ++|+|++.|+++++.+.
T Consensus 805 L~p~~g~~~G~Iv~~g~~~el~~~ 828 (842)
T 2vf7_A 805 IGPGAGEDGGRLVAQGTPAEVAQA 828 (842)
T ss_dssp ECSSSGGGCCSEEEEECHHHHTTC
T ss_pred ECCCCCCCCCEEEEEcCHHHHHhC
Confidence 9 79999999999999863
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-28 Score=303.80 Aligned_cols=208 Identities=23% Similarity=0.357 Sum_probs=155.5
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHH-hc----cC---CCcc-------------
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQ-RF----YA---PLGG------------- 418 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~-~~----~~---~~~G------------- 418 (1133)
.++++|++. ..|+|+||+|++|+++||+|+||||||||++.|+ |. +. +..|
T Consensus 629 ~L~v~~l~~--------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 700 (972)
T 2r6f_A 629 WLEVVGARE--------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDK 700 (972)
T ss_dssp EEEEEEECS--------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSE
T ss_pred EEEEecCcc--------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccce
Confidence 488888852 2699999999999999999999999999999864 22 11 1233
Q ss_pred EEEECCeecCCCC---HH-------HH---------hhhceEEecCCCCc------------------------------
Q 041277 419 EIILDGVSIDKLQ---LK-------WL---------RSQMGLVSQEPALF------------------------------ 449 (1133)
Q Consensus 419 ~i~~~g~~~~~~~---~~-------~~---------r~~i~~v~Q~~~l~------------------------------ 449 (1133)
.|.+||.++.... +. .. .+.+||++|...+.
T Consensus 701 ~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce 780 (972)
T 2r6f_A 701 VIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCE 780 (972)
T ss_dssp EEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECT
T ss_pred EEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccccccc
Confidence 4788888875321 11 11 23468888853210
Q ss_pred -------------------------cccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccc-cccCCCCCCChH
Q 041277 450 -------------------------ATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDT-QVGERGVQMSGG 503 (1133)
Q Consensus 450 -------------------------~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~~~~~g~~LSgG 503 (1133)
..|+.||+.|... . .++.+ ..+.++.+ |+.. ..+....+||||
T Consensus 781 ~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~-~--~~~~~------~~~~L~~~--gL~~~~l~~~~~~LSGG 849 (972)
T 2r6f_A 781 VCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFAS-I--PKIKR------KLETLYDV--GLGYMKLGQPATTLSGG 849 (972)
T ss_dssp TTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCS-C--HHHHH------HHHHHHHT--TCSSSBTTCCGGGCCHH
T ss_pred ccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhc-c--hhHHH------HHHHHHHc--CCCcccccCchhhCCHH
Confidence 1255566554321 1 11111 12334444 3444 467777899999
Q ss_pred HHHHHHHHHHHhhCC---CEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhcCCEEEEE------eCC
Q 041277 504 QKQRIAIARAIIKAP---RILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRNADVIAVV------QDG 573 (1133)
Q Consensus 504 qkqri~iARal~~~~---~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~~l------~~G 573 (1133)
|||||+|||||+++| ++|||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+..||+|++| ++|
T Consensus 850 ekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gG~~~G 929 (972)
T 2r6f_A 850 EAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGG 929 (972)
T ss_dssp HHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSTTSCC
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEcCCCCCCCC
Confidence 999999999999875 9999999999999999999999998875 589999999999998889999999 799
Q ss_pred eEEeecCcchhcc
Q 041277 574 QVMETGSHDELIQ 586 (1133)
Q Consensus 574 ~i~~~g~~~~l~~ 586 (1133)
+|++.|+++++.+
T Consensus 930 ~Iv~~g~~~el~~ 942 (972)
T 2r6f_A 930 QIVAVGTPEEVAE 942 (972)
T ss_dssp SEEEEESHHHHHT
T ss_pred EEEEecCHHHHHh
Confidence 9999999999976
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-32 Score=320.47 Aligned_cols=180 Identities=11% Similarity=0.112 Sum_probs=144.1
Q ss_pred cceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCcc-E-EEECCeecCCCCHHHHhhhceEEecCCCCcc----ccH
Q 041277 380 KDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGG-E-IILDGVSIDKLQLKWLRSQMGLVSQEPALFA----TSI 453 (1133)
Q Consensus 380 ~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G-~-i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~----~ti 453 (1133)
.++||++++|++++|+||||||||||+++|+|++.|++| + |++|| + .|+.++|+||++.+|. .|+
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~--------~~~~i~~vpq~~~l~~~~~~~tv 199 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-D--------PQQPIFTVPGCISATPISDILDA 199 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-C--------TTSCSSSCSSCCEEEECCSCCCT
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-C--------ccCCeeeeccchhhcccccccch
Confidence 378999999999999999999999999999999999999 9 99998 1 2678999999986543 489
Q ss_pred HHHHhcCCCC-C---CHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHH--HhhCCCE----EEE
Q 041277 454 KENILFGKED-A---SMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARA--IIKAPRI----LLL 523 (1133)
Q Consensus 454 ~eni~~~~~~-~---~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa--l~~~~~i----lll 523 (1133)
+||+ |+... . ..+++.++++.. |++.... ..+||||||||++|||| |+.+|++ |||
T Consensus 200 ~eni-~~~~~~~~~~~~~~~~~ll~~~-----------gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlL 265 (460)
T 2npi_A 200 QLPT-WGQSLTSGATLLHNKQPMVKNF-----------GLERINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIV 265 (460)
T ss_dssp TCTT-CSCBCBSSCCSSCCBCCEECCC-----------CSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEE
T ss_pred hhhh-cccccccCcchHHHHHHHHHHh-----------CCCcccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEE
Confidence 9999 76431 0 111111222222 2333222 56899999999999999 9999999 999
Q ss_pred eC-cccCCChHHHHHHHHHHHHHhCCCeEEEEecCcc------hhhc-CCE-----EEEEe-CCeEEeecCcchhcc
Q 041277 524 DE-ATSALDSESERVVQEALDKAVVGRTTIIIAHRLS------TIRN-ADV-----IAVVQ-DGQVMETGSHDELIQ 586 (1133)
Q Consensus 524 DE-~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~------~~~~-~d~-----i~~l~-~G~i~~~g~~~~l~~ 586 (1133)
|| ||++||+. .+.+.+.+++. ++|+|+|+|+.+ .+.. ||+ |++|+ +|+++ .|+++++.+
T Consensus 266 DEpPts~LD~~-~~~l~~l~~~~--~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~~ 338 (460)
T 2npi_A 266 DTPSISQLDEN-LAELHHIIEKL--NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKRS 338 (460)
T ss_dssp ECCCGGGSCSS-CHHHHHHHHHT--TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHHH
T ss_pred eCCcccccChh-HHHHHHHHHHh--CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHhh
Confidence 99 99999999 66676666554 789999999988 5544 999 99999 99999 999988854
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-28 Score=289.06 Aligned_cols=201 Identities=18% Similarity=0.265 Sum_probs=150.2
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccC--------------------------------------CCccE
Q 041277 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYA--------------------------------------PLGGE 419 (1133)
Q Consensus 378 ~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~--------------------------------------~~~G~ 419 (1133)
.+++++|++++| +++|+||||||||||+++|.++.. +.+|+
T Consensus 50 ~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~~ 128 (415)
T 4aby_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGA 128 (415)
T ss_dssp TEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCEE
T ss_pred ceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCceE
Confidence 689999999999 999999999999999999977664 45789
Q ss_pred EEECCeecCCCCHHHHhhh-ceEEecCCCCccccHHHHHhcCCCCCCH--------------------------------
Q 041277 420 IILDGVSIDKLQLKWLRSQ-MGLVSQEPALFATSIKENILFGKEDASM-------------------------------- 466 (1133)
Q Consensus 420 i~~~g~~~~~~~~~~~r~~-i~~v~Q~~~l~~~ti~eni~~~~~~~~~-------------------------------- 466 (1133)
+++||.+++..+..++.+. +++++|++.++..+..++..|-......
T Consensus 129 i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~ 208 (415)
T 4aby_A 129 ARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKHPT 208 (415)
T ss_dssp EEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred EEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcCc
Confidence 9999999986666676666 8999999887765554443331111100
Q ss_pred ------------HHHHHHHH------H-------hchHHHHHhC--CC----------------cccc---cccCCCCC-
Q 041277 467 ------------EEVIEAAK------A-------SNAHNFIRQL--PQ----------------QYDT---QVGERGVQ- 499 (1133)
Q Consensus 467 ------------~~~~~~~~------~-------~~~~~~i~~l--~~----------------g~~t---~~~~~g~~- 499 (1133)
+++.+.+. . ..+.+.+..+ |+ |.+. .+..++.+
T Consensus 209 ~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 288 (415)
T 4aby_A 209 SLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGEE 288 (415)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSCC
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCCc
Confidence 00000000 0 0011122222 11 1111 23444434
Q ss_pred -------CChHHHHHHHHHHHHhhCC--CEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEE
Q 041277 500 -------MSGGQKQRIAIARAIIKAP--RILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVV 570 (1133)
Q Consensus 500 -------LSgGqkqri~iARal~~~~--~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 570 (1133)
||||||||++|||+|+.+| ++|||||||++||+.+...+.+.|+++.+|+|+|+|||+++.+..||++++|
T Consensus 289 ~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~~l 368 (415)
T 4aby_A 289 LGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKV 368 (415)
T ss_dssp CCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEE
T ss_pred ccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEEEE
Confidence 8999999999999999999 9999999999999999999999999988899999999999888889999999
Q ss_pred ----eCCeEEeec
Q 041277 571 ----QDGQVMETG 579 (1133)
Q Consensus 571 ----~~G~i~~~g 579 (1133)
++|+++...
T Consensus 369 ~k~~~~G~~~~~~ 381 (415)
T 4aby_A 369 EKQVEDGRTVSHV 381 (415)
T ss_dssp EEEEETTEEEEEE
T ss_pred EEeccCCceEEEE
Confidence 999987653
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=9.8e-27 Score=252.38 Aligned_cols=132 Identities=38% Similarity=0.644 Sum_probs=121.3
Q ss_pred ccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhc
Q 041277 1000 GNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRH 1079 (1133)
Q Consensus 1000 g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~ 1079 (1133)
-+|+++||+|+|+++ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|++||.|+.+++...+|++
T Consensus 6 ~~~~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~ 84 (247)
T 2ff7_A 6 HDITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84 (247)
T ss_dssp EEEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred CceeEEEEEEEeCCC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhc
Confidence 479999999999421 3469999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1080 IALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1080 isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
|++|||+|.+|++|++|||.++.+ ..++++++++++.+++++++.++|+||++
T Consensus 85 i~~v~Q~~~l~~~tv~enl~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~gl~~ 137 (247)
T 2ff7_A 85 VGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIYAAKLAGAHDFISELREGYNT 137 (247)
T ss_dssp EEEECSSCCCTTSBHHHHHTTTCT-TCCHHHHHHHHHHHTCHHHHHTSTTGGGC
T ss_pred EEEEeCCCccccccHHHHHhccCC-CCCHHHHHHHHHHhChHHHHHhCcchhhh
Confidence 999999999999999999999854 35678899999999999999999988865
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.93 E-value=6.9e-26 Score=257.05 Aligned_cols=195 Identities=20% Similarity=0.268 Sum_probs=140.6
Q ss_pred cceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhcc----------------------------------------------
Q 041277 380 KDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFY---------------------------------------------- 413 (1133)
Q Consensus 380 ~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~---------------------------------------------- 413 (1133)
+++++++.+| +++|+||||||||||+.+|..+.
T Consensus 16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~ 94 (322)
T 1e69_A 16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVA 94 (322)
T ss_dssp SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEE
T ss_pred CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEE
Confidence 3578899999 99999999999999999998432
Q ss_pred ----CCCccEEEECCeecCCCCHHHHhhhceEEecCCCCc-cccHHHHHhcCCCC---------------CCHHHHHHHH
Q 041277 414 ----APLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALF-ATSIKENILFGKED---------------ASMEEVIEAA 473 (1133)
Q Consensus 414 ----~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~-~~ti~eni~~~~~~---------------~~~~~~~~~~ 473 (1133)
.+.+|++++||.+++..+...+...+++.+|+..++ .+++.+|+.....+ ..++++.+..
T Consensus 95 r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~ 174 (322)
T 1e69_A 95 RELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESF 174 (322)
T ss_dssp EEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------CHHHHHHH
T ss_pred EEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 344678999999875545556666789999988766 78999998753211 0111222221
Q ss_pred HHh------------ch-HHHHHhCCCccccccc------CCCCCCChHHHHHHHHHHHHh----hCCCEEEEeCcccCC
Q 041277 474 KAS------------NA-HNFIRQLPQQYDTQVG------ERGVQMSGGQKQRIAIARAII----KAPRILLLDEATSAL 530 (1133)
Q Consensus 474 ~~~------------~~-~~~i~~l~~g~~t~~~------~~g~~LSgGqkqri~iARal~----~~~~illlDE~ts~l 530 (1133)
... .+ ......++.|+++.++ ....+||||||||++|||||+ .+|+++||||||++|
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~L 254 (322)
T 1e69_A 175 NRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPL 254 (322)
T ss_dssp HHHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSC
T ss_pred HHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCC
Confidence 110 00 0011234445555432 235689999999999999997 689999999999999
Q ss_pred ChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEE--EEEeCCeE
Q 041277 531 DSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVI--AVVQDGQV 575 (1133)
Q Consensus 531 D~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i--~~l~~G~i 575 (1133)
|+...+.+.+.++++.+++|+|++||+.+....||++ ++|++|+.
T Consensus 255 D~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s 301 (322)
T 1e69_A 255 DDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVS 301 (322)
T ss_dssp CHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSSCE
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEEEEEEeCCEE
Confidence 9999999999999887789999999998877789987 88888854
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.2e-26 Score=247.53 Aligned_cols=132 Identities=40% Similarity=0.703 Sum_probs=120.4
Q ss_pred ccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhc
Q 041277 1000 GNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRH 1079 (1133)
Q Consensus 1000 g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~ 1079 (1133)
+.|+++||+|+|+++++.++|+|+||+|++||.+||+||||||||||+++|.|+++| +|+|.+||.|+.+.+...+|++
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 569999999999743224699999999999999999999999999999999999987 8999999999999888899999
Q ss_pred ccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1080 IALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1080 isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
|+||||+|.+|++|++|||.++.+ ..+++++.++++.+++.+++..+|+|+||
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~-~~~~~~~~~~l~~~~l~~~~~~l~~~~~~ 147 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKL-DATDEEVIKATKSAQLYDFIEALPKKWDT 147 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCT-TCCHHHHHHHHHHTTCHHHHHTSTTGGGC
T ss_pred EEEEcCCCcccccCHHHHHhccCC-CCCHHHHHHHHHHhCCHHHHHhccccccc
Confidence 999999999999999999999754 34678899999999999999999998874
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-25 Score=247.40 Aligned_cols=134 Identities=43% Similarity=0.776 Sum_probs=120.2
Q ss_pred cccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhh
Q 041277 999 TGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRR 1078 (1133)
Q Consensus 999 ~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~ 1078 (1133)
.+.|+++||+|+|+++++.++|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|++||.|+.+.+...+|+
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhc
Confidence 46799999999996422346999999999999999999999999999999999999999999999999999888888999
Q ss_pred cccccccccccccccHHHHhccCCCCCCCH-HHHHHHHHHcchHHHHhhcccccCC
Q 041277 1079 HIALVSQEPTLFAGTIRENIAYGASDEIDE-SEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1079 ~isiV~Qdp~LF~gTIreNI~~g~~~~~sd-eei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
+|+||||+|.+|++|++|||.++.+. .++ +++.++++.++++++++.+|+|+++
T Consensus 94 ~i~~v~Q~~~l~~~tv~enl~~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~gl~~ 148 (271)
T 2ixe_A 94 QVAAVGQEPLLFGRSFRENIAYGLTR-TPTMEEITAVAMESGAHDFISGFPQGYDT 148 (271)
T ss_dssp HEEEECSSCCCCSSBHHHHHHTTCSS-CCCHHHHHHHHHHHTCHHHHHHSTTGGGS
T ss_pred cEEEEecCCccccccHHHHHhhhccc-CChHHHHHHHHHHHhHHHHHHhhhcchhh
Confidence 99999999999999999999998542 333 6788899999999999999988764
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.93 E-value=3.7e-26 Score=247.80 Aligned_cols=129 Identities=34% Similarity=0.631 Sum_probs=118.9
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhccc
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIA 1081 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~is 1081 (1133)
|+++||+|+|++ +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.|+.+.+...+|++|+
T Consensus 2 l~~~~l~~~y~~--~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (243)
T 1mv5_A 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (243)
T ss_dssp EEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEEeCC--CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEE
Confidence 789999999952 345999999999999999999999999999999999999999999999999999988888999999
Q ss_pred ccccccccccccHHHHhccC-CCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1082 LVSQEPTLFAGTIRENIAYG-ASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1082 iV~Qdp~LF~gTIreNI~~g-~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
+|||+|.+|.+|++|||.++ .+ ..++++++++++.++++++++++|+|++|
T Consensus 80 ~v~q~~~l~~~tv~enl~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~gl~~ 131 (243)
T 1mv5_A 80 FVSQDSAIMAGTIRENLTYGLEG-DYTDEDLWQVLDLAFARSFVENMPDQLNT 131 (243)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTS-CSCHHHHHHHHHHHTCTTTTTSSTTGGGC
T ss_pred EEcCCCccccccHHHHHhhhccC-CCCHHHHHHHHHHhChHHHHHhCccchhc
Confidence 99999999999999999997 33 35678899999999999999999988864
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.7e-27 Score=249.41 Aligned_cols=157 Identities=12% Similarity=0.161 Sum_probs=101.4
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHH
Q 041277 377 IIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKEN 456 (1133)
Q Consensus 377 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~en 456 (1133)
.+|+|+ ++||+++|+||||||||||+++|+|+ +|++|+|. +.++.. +...+++++|||||++ +||
T Consensus 14 ~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~~-~~~~~~~~ig~v~q~~-------~en 78 (208)
T 3b85_A 14 HYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILTR-PAVEAGEKLGFLPGTL-------NEK 78 (208)
T ss_dssp HHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEEE-CSCCTTCCCCSSCC------------
T ss_pred HHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEecC-CchhhhcceEEecCCH-------HHH
Confidence 489995 89999999999999999999999999 99999994 333321 2223567899999997 666
Q ss_pred H-hcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHH
Q 041277 457 I-LFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESE 535 (1133)
Q Consensus 457 i-~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~ 535 (1133)
+ .++.+. .+.+........+.+.++. | | |||||++|||||+.+|++|||||||++ ++
T Consensus 79 l~~~~~~~--~~~~~~~~~~~~~~~~l~~---g-----------l--Gq~qrv~lAraL~~~p~lllLDEPts~----~~ 136 (208)
T 3b85_A 79 IDPYLRPL--HDALRDMVEPEVIPKLMEA---G-----------I--VEVAPLAYMRGRTLNDAFVILDEAQNT----TP 136 (208)
T ss_dssp -CTTTHHH--HHHHTTTSCTTHHHHHHHT---T-----------S--EEEEEGGGGTTCCBCSEEEEECSGGGC----CH
T ss_pred HHHHHHHH--HHHHHHhccHHHHHHHHHh---C-----------C--chHHHHHHHHHHhcCCCEEEEeCCccc----cH
Confidence 6 342100 0000000000112222221 1 2 999999999999999999999999999 88
Q ss_pred HHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCe
Q 041277 536 RVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQ 574 (1133)
Q Consensus 536 ~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~ 574 (1133)
+.+.+.|+++.+|+|+| +||+++.+. ++...++|.
T Consensus 137 ~~l~~~l~~l~~g~tii-vtHd~~~~~---~~~~~~~G~ 171 (208)
T 3b85_A 137 AQMKMFLTRLGFGSKMV-VTGDITQVD---LPGGQKSGL 171 (208)
T ss_dssp HHHHHHHTTBCTTCEEE-EEEC---------------CC
T ss_pred HHHHHHHHHhcCCCEEE-EECCHHHHh---CcCCCCCcH
Confidence 88888888775578999 999987654 333445553
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.92 E-value=8.4e-26 Score=282.73 Aligned_cols=166 Identities=22% Similarity=0.354 Sum_probs=117.3
Q ss_pred HHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCC-CCHHHHHHHHHHhchHHHHH
Q 041277 405 VIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKED-ASMEEVIEAAKASNAHNFIR 483 (1133)
Q Consensus 405 ll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~-~~~~~~~~~~~~~~~~~~i~ 483 (1133)
+..|.-+.+.|..|+|.++|+++.++....+.+.++++.+ +.+...+ ....+..+..+. ..+++.
T Consensus 384 C~~C~g~rl~~~~~~V~i~G~~i~~~~~~~v~~~l~~~~~------------~~l~~~~~~~~~~~~~~~~~--~~~~L~ 449 (916)
T 3pih_A 384 CSVCGGRRLNREALSVKINGLNIHEFTELSISEELEFLKN------------LNLTEREREIVGELLKEIEK--RLEFLV 449 (916)
T ss_dssp CTTTCSCCBCTTGGGEEETTEEHHHHHHSBHHHHHHHHHS------------CCCCTTTTTTHHHHHHHHHH--HHHHHH
T ss_pred chhcccccCChHhcCcEECCccHHHhhhCCHHHHHHHHHh------------ccCcHHHHHHHHhhHHHHHH--HHHHHH
Confidence 3445556788999999999998865433223333333211 1111111 111112111111 123444
Q ss_pred hCCCccccc-ccCCCCCCChHHHHHHHHHHHHhhCCC--EEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcc
Q 041277 484 QLPQQYDTQ-VGERGVQMSGGQKQRIAIARAIIKAPR--ILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLS 559 (1133)
Q Consensus 484 ~l~~g~~t~-~~~~g~~LSgGqkqri~iARal~~~~~--illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~ 559 (1133)
.+ |++.. .+....+|||||||||+|||||.++|+ +|||||||++||+...+.+.+.|+++. +|+|+|+|+|+++
T Consensus 450 ~v--gL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~ 527 (916)
T 3pih_A 450 DV--GLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEE 527 (916)
T ss_dssp TT--TCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHH
T ss_pred Hc--CCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 44 34322 456667999999999999999999887 999999999999999999999999875 4899999999999
Q ss_pred hhhcCCEEEEE------eCCeEEeecCcchhcc
Q 041277 560 TIRNADVIAVV------QDGQVMETGSHDELIQ 586 (1133)
Q Consensus 560 ~~~~~d~i~~l------~~G~i~~~g~~~~l~~ 586 (1133)
.+..||+|++| ++|+++.+|+++++++
T Consensus 528 ~~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~ 560 (916)
T 3pih_A 528 VIRNADHIIDIGPGGGTNGGRVVFQGTVDELLK 560 (916)
T ss_dssp HHHTCSEEEEEESSSGGGCSEEEEEECHHHHHH
T ss_pred HHHhCCEEEEEcCCcccCCCEEEEeechhhhhc
Confidence 99889999999 8999999998887753
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-24 Score=269.12 Aligned_cols=179 Identities=20% Similarity=0.269 Sum_probs=126.6
Q ss_pred CCCCcHHHHHHHHHhc---------cCCCccEEEECCeecCC---CCHHHHhhhceEEecCCCCccccHHHHHhcCCCCC
Q 041277 397 GSGSGKSTVIALLQRF---------YAPLGGEIILDGVSIDK---LQLKWLRSQMGLVSQEPALFATSIKENILFGKEDA 464 (1133)
Q Consensus 397 ~sGsGKSTll~~l~~~---------~~~~~G~i~~~g~~~~~---~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~ 464 (1133)
.+..||+++.+.+... |.|..|+|.++|+++.+ ++..++..-+.-++|++..+. + +...+...
T Consensus 270 ~~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~~~~~~v~e~~~~~~~~~~~~~~~~-~--~~~~~~~~-- 344 (842)
T 2vf7_A 270 ESASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITELSRLPLARVSELLRPYAEEREPGH-A--ERVKNRPE-- 344 (842)
T ss_dssp CCHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHHHHHSBHHHHHHHHHHHHTTCSSCS-T--TSSSSCSS--
T ss_pred cCHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHHHhhcCHHHHHHHHHhhhhhhhhcc-c--chhhcchh--
Confidence 3556788777766553 45678999999999987 455554444444455443221 1 11222211
Q ss_pred CHHHHH-----HHHHHhchHHHHHhCCCccccc-ccCCCCCCChHHHHHHHHHHHHhhCC--CEEEEeCcccCCChHHHH
Q 041277 465 SMEEVI-----EAAKASNAHNFIRQLPQQYDTQ-VGERGVQMSGGQKQRIAIARAIIKAP--RILLLDEATSALDSESER 536 (1133)
Q Consensus 465 ~~~~~~-----~~~~~~~~~~~i~~l~~g~~t~-~~~~g~~LSgGqkqri~iARal~~~~--~illlDE~ts~lD~~~~~ 536 (1133)
..++. +..+.. +.+..+ |++.. .+....+|||||||||+|||||.++| ++|||||||++||++..+
T Consensus 345 -~~~i~~~i~~ei~~rl---~~L~~v--GL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~ 418 (842)
T 2vf7_A 345 -QAIALQRMAADLVKRL---DVLLHL--GLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTE 418 (842)
T ss_dssp -HHHHHHHHHHHHHHHH---HHHHHT--TCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHH
T ss_pred -hHHHHHHHHHHHHHHH---HHHHhC--CCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHH
Confidence 11111 111111 134444 34332 46667799999999999999999999 599999999999999999
Q ss_pred HHHHHHHHHh-CCCeEEEEecCcchhhcCCEEEEE------eCCeEEeecCcchhcc
Q 041277 537 VVQEALDKAV-VGRTTIIIAHRLSTIRNADVIAVV------QDGQVMETGSHDELIQ 586 (1133)
Q Consensus 537 ~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~~l------~~G~i~~~g~~~~l~~ 586 (1133)
.+.+.++++. .|.|+|+|+||++.+..||+|++| ++|+++..|+++++.+
T Consensus 419 ~L~~~l~~L~~~G~TVIvVeHdl~~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~ 475 (842)
T 2vf7_A 419 ALLSALENLKRGGNSLFVVEHDLDVIRRADWLVDVGPEAGEKGGEILYSGPPEGLKH 475 (842)
T ss_dssp HHHHHHHHHHTTTCEEEEECCCHHHHTTCSEEEEECSSSGGGCCSEEEEECGGGGGG
T ss_pred HHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEeCCCcccCCCEEEEecCHHHHHh
Confidence 9999998875 489999999999988889999999 7899999888877643
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-24 Score=247.64 Aligned_cols=132 Identities=26% Similarity=0.453 Sum_probs=120.7
Q ss_pred CcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHh
Q 041277 998 ITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLR 1077 (1133)
Q Consensus 998 ~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR 1077 (1133)
..+.|+++||+++|+.. +.++|+||||+|++||.+||+||||||||||+++|.|+++ ++|+|++||.|+.+++.+.+|
T Consensus 16 ~~~~i~~~~l~~~y~~~-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~r 93 (390)
T 3gd7_A 16 SGGQMTVKDLTAKYTEG-GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWR 93 (390)
T ss_dssp SSCCEEEEEEEEESSSS-SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHH
T ss_pred CCCeEEEEEEEEEecCC-CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHh
Confidence 35789999999999632 3469999999999999999999999999999999999998 899999999999999999999
Q ss_pred hcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1078 RHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1078 ~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
++|++|||++.||++|++||+.+.. ...+++++++++.+++++++.+.|.+|+|
T Consensus 94 r~ig~v~Q~~~lf~~tv~enl~~~~--~~~~~~v~~~l~~~~L~~~~~~~p~~l~~ 147 (390)
T 3gd7_A 94 KAFGVIPQKVFIFSGTFRKNLDPNA--AHSDQEIWKVADEVGLRSVIEQFPGKLDF 147 (390)
T ss_dssp HTEEEESCCCCCCSEEHHHHHCTTC--CSCHHHHHHHHHHTTCHHHHTTSTTGGGC
T ss_pred CCEEEEcCCcccCccCHHHHhhhcc--ccCHHHHHHHHHHhCCHHHHhhccccccc
Confidence 9999999999999999999998643 35688999999999999999999998654
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.6e-23 Score=257.43 Aligned_cols=151 Identities=22% Similarity=0.359 Sum_probs=111.0
Q ss_pred cCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCC-CCCHH--H-----HHHHHHHhchHHHHHh
Q 041277 413 YAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKE-DASME--E-----VIEAAKASNAHNFIRQ 484 (1133)
Q Consensus 413 ~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~-~~~~~--~-----~~~~~~~~~~~~~i~~ 484 (1133)
+.|....|.++|++|.+ +...||.|++.|... ..+.+ . +.+..++. +++..
T Consensus 432 l~~~~l~v~~~g~~i~q------------------~~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl---~~L~~ 490 (972)
T 2r6f_A 432 LKKESLAVLVGGKHIGE------------------VTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL---GFLQN 490 (972)
T ss_dssp BCTTTTTEESSSCBHHH------------------HHTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH---HHHHH
T ss_pred cCHHHheeEECCCcHHH------------------HhhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH---HHhhh
Confidence 45566677777766532 234578888777321 11221 1 11222221 23343
Q ss_pred CCCccccc-ccCCCCCCChHHHHHHHHHHHHhhCC--CEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcch
Q 041277 485 LPQQYDTQ-VGERGVQMSGGQKQRIAIARAIIKAP--RILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLST 560 (1133)
Q Consensus 485 l~~g~~t~-~~~~g~~LSgGqkqri~iARal~~~~--~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~ 560 (1133)
+ |++.. ......+|||||||||+||+||..+| ++|||||||++||+...+.+.+.|+++. .|.|+|+|+||++.
T Consensus 491 v--GL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~ 568 (972)
T 2r6f_A 491 V--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDT 568 (972)
T ss_dssp H--TCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHH
T ss_pred C--CCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 3 33322 45566799999999999999999985 9999999999999999999999999876 58999999999999
Q ss_pred hhcCCEEEEE------eCCeEEeecCcchhcc
Q 041277 561 IRNADVIAVV------QDGQVMETGSHDELIQ 586 (1133)
Q Consensus 561 ~~~~d~i~~l------~~G~i~~~g~~~~l~~ 586 (1133)
+..||+|++| ++|+++.+|+++++.+
T Consensus 569 i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~ 600 (972)
T 2r6f_A 569 MLAADYLIDIGPGAGIHGGEVVAAGTPEEVMN 600 (972)
T ss_dssp HHSCSEEEEECSSSGGGCCSEEEEECTTTTTT
T ss_pred HHhCCEEEEeCCCccCCCCEEEEecCHHHHHh
Confidence 9889999999 7899999998877653
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.6e-25 Score=226.29 Aligned_cols=149 Identities=18% Similarity=0.219 Sum_probs=107.0
Q ss_pred ceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCC--CccccHHHHHh
Q 041277 381 DFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPA--LFATSIKENIL 458 (1133)
Q Consensus 381 ~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~--l~~~ti~eni~ 458 (1133)
|+||++++||+++|+||||||||||++++.+ |...+ +.+.+| ++++|++. .+.+++.+++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~~--------~~d~~~---g~~~~~~~~~~~~~~~~~~~~ 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEVI--------SSDFCR---GLMSDDENDQTVTGAAFDVLH 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGEE--------EHHHHH---HHHCSSTTCGGGHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeEE--------ccHHHH---HHhcCcccchhhHHHHHHHHH
Confidence 6899999999999999999999999999653 21112 222333 67788763 22333333322
Q ss_pred cCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHH----
Q 041277 459 FGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSES---- 534 (1133)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~---- 534 (1133)
. .. ...+..|+.+.+... ...|||||||++||||+..+|++++|||||++||+.+
T Consensus 64 ~------------~~--------~~~~~~g~~~~~~~~-~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~ 122 (171)
T 4gp7_A 64 Y------------IV--------SKRLQLGKLTVVDAT-NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRT 122 (171)
T ss_dssp H------------HH--------HHHHHTTCCEEEESC-CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCS
T ss_pred H------------HH--------HHHHhCCCeEEEECC-CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhccc
Confidence 1 10 011123454444433 4569999999999999999999999999999999994
Q ss_pred ------------HHHHHHHHHHHh-CCCeEEEEecCcchhhcCCEE
Q 041277 535 ------------ERVVQEALDKAV-VGRTTIIIAHRLSTIRNADVI 567 (1133)
Q Consensus 535 ------------~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i 567 (1133)
.+.+.+.++++. +|.|+|+|||+++.+..++++
T Consensus 123 ~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 123 DRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp SCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHEEEE
T ss_pred CCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhhhhc
Confidence 477777776653 589999999999998877654
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.7e-23 Score=238.96 Aligned_cols=83 Identities=22% Similarity=0.332 Sum_probs=76.2
Q ss_pred CCCCCCChHHHHHHHHHHHHh------hCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhcCCEE
Q 041277 495 ERGVQMSGGQKQRIAIARAII------KAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRNADVI 567 (1133)
Q Consensus 495 ~~g~~LSgGqkqri~iARal~------~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i 567 (1133)
....+||||||||++|||||+ .+|++|||||||++||+.+...+.+.|+++. +|+|+|+|||+++....||++
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~~ 354 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDRK 354 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSCE
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEE
Confidence 455689999999999999999 7999999999999999999999999998875 589999999999987789999
Q ss_pred EEEeCCeEEe
Q 041277 568 AVVQDGQVME 577 (1133)
Q Consensus 568 ~~l~~G~i~~ 577 (1133)
++|++|++++
T Consensus 355 ~~l~~G~i~~ 364 (365)
T 3qf7_A 355 LRITGGVVVN 364 (365)
T ss_dssp EEEETTEEC-
T ss_pred EEEECCEEEe
Confidence 9999999975
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.89 E-value=6.7e-25 Score=225.70 Aligned_cols=147 Identities=13% Similarity=0.201 Sum_probs=109.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHH
Q 041277 391 TVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVI 470 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~ 470 (1133)
.++|+||||||||||+++|+|++. |.++|.+..+......++++||++|++ +..+|+. +..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~~-~~~-------- 62 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKIF-SSK-------- 62 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEEE-EET--------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHHH-Hhh--------
Confidence 689999999999999999999995 567776654433224567899999987 2223321 100
Q ss_pred HHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHH-----HhhCCCEEEEeC--cccCCChHHHHHHHHHHH
Q 041277 471 EAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARA-----IIKAPRILLLDE--ATSALDSESERVVQEALD 543 (1133)
Q Consensus 471 ~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa-----l~~~~~illlDE--~ts~lD~~~~~~i~~~l~ 543 (1133)
..+ .+..+++.+.+||||||||++|||| ++.+|+++|||| ||++||+...+.+.+.++
T Consensus 63 -------------~~~--~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~ 127 (178)
T 1ye8_A 63 -------------FFT--SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMH 127 (178)
T ss_dssp -------------TCC--CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHT
T ss_pred -------------cCC--ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHh
Confidence 001 1134666778999999999999996 999999999999 999999999999998887
Q ss_pred HHhCCCeEEEEec---Ccchhhc-CCEEEEEeCCeEEe
Q 041277 544 KAVVGRTTIIIAH---RLSTIRN-ADVIAVVQDGQVME 577 (1133)
Q Consensus 544 ~~~~~~t~i~itH---~~~~~~~-~d~i~~l~~G~i~~ 577 (1133)
+ .+.|+|+++| +.+.+.. ||+ .+|++++
T Consensus 128 ~--~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 128 D--PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp C--TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred c--CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 6 4677899986 6667765 777 5677765
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.89 E-value=7.8e-27 Score=249.34 Aligned_cols=165 Identities=16% Similarity=0.165 Sum_probs=119.1
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCH-HHHhhhceEEecCCCCccc-----
Q 041277 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQL-KWLRSQMGLVSQEPALFAT----- 451 (1133)
Q Consensus 378 ~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~-~~~r~~i~~v~Q~~~l~~~----- 451 (1133)
.|+|+||++++|++++|+||||||||||+++|+|++ | |+|.+ |.++...+. ...++.++|++|++.+|..
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 87 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNE 87 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTT
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhcc
Confidence 699999999999999999999999999999999999 6 99999 887754432 2345789999999877643
Q ss_pred ------cHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHH-----HHHHhhCCCE
Q 041277 452 ------SIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAI-----ARAIIKAPRI 520 (1133)
Q Consensus 452 ------ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~i-----ARal~~~~~i 520 (1133)
++.+| .+|.+ .+++.++++.. ....++ .+||||||||++| ||+++.+|++
T Consensus 88 ~~l~~~~~~~~-~~g~~---~~~i~~~l~~~------------~~~il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~ 148 (218)
T 1z6g_A 88 DFLEYDNYANN-FYGTL---KSEYDKAKEQN------------KICLFE---MNINGVKQLKKSTHIKNALYIFIKPPST 148 (218)
T ss_dssp CEEEEEEETTE-EEEEE---HHHHHHHHHTT------------CEEEEE---ECHHHHHHHTTCSSCCSCEEEEEECSCH
T ss_pred chhhhhhcccc-cCCCc---HHHHHHHHhCC------------CcEEEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCH
Confidence 22333 22322 33444443321 111222 5799999999999 8999999999
Q ss_pred EEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeC
Q 041277 521 LLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQD 572 (1133)
Q Consensus 521 lllDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~ 572 (1133)
++|||||+++|.+++..+++.+.+..+++| ++| +..||.|+++++
T Consensus 149 ~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~---~~h----~~~~d~iiv~~~ 193 (218)
T 1z6g_A 149 DVLLSRLLTRNTENQEQIQKRMEQLNIELH---EAN----LLNFNLSIINDD 193 (218)
T ss_dssp HHHHHHHHHTCCCCHHHHHHHHHHHHHHHH---HHT----TSCCSEEEECSS
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHH---hhc----ccCCCEEEECCC
Confidence 999999999999999999999988776667 677 567999988764
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.89 E-value=6.3e-27 Score=264.88 Aligned_cols=206 Identities=17% Similarity=0.150 Sum_probs=141.3
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccCCCCCCCCCccccc-ccccccEE---------
Q 041277 294 GAQGGTVFAVGASIAVGGLALGAGLP-NLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEIL-ENVLGEVE--------- 362 (1133)
Q Consensus 294 ~~t~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~-~~~~~~i~--------- 362 (1133)
.+|.+.+.+++.++.....+ .+.. ..+.+..+..+.+|+.++++.+.. . ........ ....+.++
T Consensus 75 ~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~Ri~~~l~~p~~-~-~~~~~~~ir~~~~~~i~l~~l~~~g~ 150 (330)
T 2pt7_A 75 AFSLSRLMHFARCCASFKKK--TIDNYENPILSSNLANGERVQIVLSPVTV-N-DETISISIRIPSKTTYPHSFFEEQGF 150 (330)
T ss_dssp GGSHHHHHHHHHHHHHHTTC--CCCSSSCCEEEEECTTSCEEEEECTTTSS-S-TTCCEEEEECCCCCCCCHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHHhCC--CCCCCCCeeEEEEcCCCcEEEEEEcCCcc-C-CCCceEEEeCCCCCCCCHHHHHhCCC
Confidence 57888877776555443222 1111 111222233455677777653321 1 11000000 01122344
Q ss_pred EEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEE
Q 041277 363 FKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLV 442 (1133)
Q Consensus 363 ~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v 442 (1133)
|++++| | .++++++||++++|+.++|+||||||||||+++|+|+++|++|.|.++|.+. +....+++.++++
T Consensus 151 ~~~v~f-y-----~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e--~~~~~~~~~i~~~ 222 (330)
T 2pt7_A 151 YNLLDN-K-----EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEE--IVFKHHKNYTQLF 222 (330)
T ss_dssp TTTSTT-H-----HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCC--CCCSSCSSEEEEE
T ss_pred cCchhh-H-----HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeec--cccccchhEEEEE
Confidence 566666 5 1389999999999999999999999999999999999999999999998652 2222234445554
Q ss_pred ecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEE
Q 041277 443 SQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILL 522 (1133)
Q Consensus 443 ~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~ill 522 (1133)
+ | |||+||++|||||..+|++++
T Consensus 223 ~--------------------------------------------------g-------gg~~~r~~la~aL~~~p~ili 245 (330)
T 2pt7_A 223 F--------------------------------------------------G-------GNITSADCLKSCLRMRPDRII 245 (330)
T ss_dssp C--------------------------------------------------B-------TTBCHHHHHHHHTTSCCSEEE
T ss_pred e--------------------------------------------------C-------CChhHHHHHHHHhhhCCCEEE
Confidence 3 0 899999999999999999999
Q ss_pred EeCcccCCChHHHHHHHHHHHHHhCCC-eEEEEecCcchhhcCCEEEEEeCCeE
Q 041277 523 LDEATSALDSESERVVQEALDKAVVGR-TTIIIAHRLSTIRNADVIAVVQDGQV 575 (1133)
Q Consensus 523 lDE~ts~lD~~~~~~i~~~l~~~~~~~-t~i~itH~~~~~~~~d~i~~l~~G~i 575 (1133)
|||||+. .+.+.++.+..|+ |+|+++|+.+....|||+++|++|+.
T Consensus 246 ldE~~~~-------e~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 246 LGELRSS-------EAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSNS 292 (330)
T ss_dssp ECCCCST-------HHHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTSG
T ss_pred EcCCChH-------HHHHHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCCc
Confidence 9999982 2455666665554 79999999997778999999988753
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.9e-23 Score=223.54 Aligned_cols=122 Identities=26% Similarity=0.389 Sum_probs=103.2
Q ss_pred EEEEeEEEECCCCC-CCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHH----
Q 041277 1002 IELQNVHFAYPARP-DVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSL---- 1076 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~L---- 1076 (1133)
|+++||+|+|+.++ +.++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+++...+
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 78999999996432 2469999999999999999999999999999999999999999999999999999998765
Q ss_pred hhcccccccccccccc-cHHHHhccCCC----CCCC----HHHHHHHHHHcchHHH
Q 041277 1077 RRHIALVSQEPTLFAG-TIRENIAYGAS----DEID----ESEIVEAAKAANAHDF 1123 (1133)
Q Consensus 1077 R~~isiV~Qdp~LF~g-TIreNI~~g~~----~~~s----deei~~Al~~a~l~df 1123 (1133)
|++|++|||+|.+|.. |++||+.++.. ...+ .+++.++++.+++.+.
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 137 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEER 137 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGG
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChh
Confidence 4579999999999987 99999976410 0112 3457788888888664
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.2e-22 Score=215.93 Aligned_cols=117 Identities=27% Similarity=0.440 Sum_probs=104.1
Q ss_pred ccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhc
Q 041277 1000 GNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRH 1079 (1133)
Q Consensus 1000 g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~ 1079 (1133)
+.|+++||+|+|+++ +.++|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|.+|| +
T Consensus 5 ~~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~ 70 (229)
T 2pze_A 5 TEVVMENVTAFWEEG-GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------R 70 (229)
T ss_dssp EEEEEEEEEECSSTT-SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------C
T ss_pred ceEEEEEEEEEeCCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------E
Confidence 569999999999632 34699999999999999999999999999999999999999999999998 4
Q ss_pred ccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccC
Q 041277 1080 IALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYD 1132 (1133)
Q Consensus 1080 isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~d 1132 (1133)
|+||||+|.+|++|++|||.++.. ..+....++++.+++.+++..+|.+++
T Consensus 71 i~~v~q~~~~~~~tv~enl~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~ 121 (229)
T 2pze_A 71 ISFCSQFSWIMPGTIKENIIFGVS--YDEYRYRSVIKACQLEEDISKFAEKDN 121 (229)
T ss_dssp EEEECSSCCCCSBCHHHHHHTTSC--CCHHHHHHHHHHTTCHHHHTTSTTGGG
T ss_pred EEEEecCCcccCCCHHHHhhccCC--cChHHHHHHHHHhCcHHHHHhCccccc
Confidence 999999999999999999999743 345567778888999999999987764
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-22 Score=223.12 Aligned_cols=128 Identities=22% Similarity=0.461 Sum_probs=107.6
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccC--CCChhHHhh
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIR--SYHLRSLRR 1078 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~--~i~l~~LR~ 1078 (1133)
-|+++||+|+|++ ..++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|++||.|+. ..+...+|+
T Consensus 7 ~l~i~~ls~~y~~--~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 7 ILKVEELNYNYSD--GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp EEEEEEEEEECTT--SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred EEEEEEEEEEECC--CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 4999999999963 235999999999999999999999999999999999999999999999999994 344567899
Q ss_pred ccccccccc--ccccccHHHHhccCCC-CCCC----HHHHHHHHHHcchHHHHhhcccc
Q 041277 1079 HIALVSQEP--TLFAGTIRENIAYGAS-DEID----ESEIVEAAKAANAHDFIAGLNEG 1130 (1133)
Q Consensus 1079 ~isiV~Qdp--~LF~gTIreNI~~g~~-~~~s----deei~~Al~~a~l~dfI~~LP~G 1130 (1133)
+||+|||+| .+|..|++|||.++.. ...+ .+.+.++++..++.++..+.|..
T Consensus 85 ~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~ 143 (275)
T 3gfo_A 85 SIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHC 143 (275)
T ss_dssp SEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGG
T ss_pred cEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCccc
Confidence 999999998 5889999999987631 1122 34578889999998876665544
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-24 Score=254.08 Aligned_cols=195 Identities=15% Similarity=0.135 Sum_probs=155.0
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCe---ecCCCC----
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGV---SIDKLQ---- 431 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~---~~~~~~---- 431 (1133)
+.++++|+++.|+. ...+|+++ |++++||+++|+||||||||||+++|+|+++|+.|.|.++|+ ++.++.
T Consensus 130 ~~l~~~~v~~~~~t--g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~ 206 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT--GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENIL 206 (438)
T ss_dssp CTTTSCCCCSBCCC--SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTT
T ss_pred CceEEeccceecCC--CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhc
Confidence 46889999999963 23599999 999999999999999999999999999999999999999998 554431
Q ss_pred -HHHHhhhceEEecC-CCCc-cccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHH
Q 041277 432 -LKWLRSQMGLVSQE-PALF-ATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRI 508 (1133)
Q Consensus 432 -~~~~r~~i~~v~Q~-~~l~-~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 508 (1133)
...+++.++||+|+ ..++ ..|+.+|+.+.. +.... +... ....+ +...+||+|| ||+
T Consensus 207 ~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~a------e~~~~-~~~~-----------v~~~l-d~l~~lS~g~-qrv 266 (438)
T 2dpy_A 207 GPDGRARSVVIAAPADVSPLLRMQGAAYATRIA------EDFRD-RGQH-----------VLLIM-DSLTRYAMAQ-REI 266 (438)
T ss_dssp HHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHH------HHHHT-TTCE-----------EEEEE-ECHHHHHHHH-HHH
T ss_pred cccccCceEEEEECCCCCHHHHHHHHHHHHHHH------HHHHh-CCCC-----------HHHHH-HhHHHHHHHH-HHH
Confidence 34577889999995 3334 559999987631 11110 0000 00111 2245799999 999
Q ss_pred HHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC-----CC-----eEEEEecCcchhhcCCEEEEEeCCeEEee
Q 041277 509 AIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVV-----GR-----TTIIIAHRLSTIRNADVIAVVQDGQVMET 578 (1133)
Q Consensus 509 ~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~-----~~-----t~i~itH~~~~~~~~d~i~~l~~G~i~~~ 578 (1133)
+|| +.+|++ |++||+.+...+.+.+.+..+ |+ |++++||+++ ...||++++|.+|+|+..
T Consensus 267 slA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl~ 336 (438)
T 2dpy_A 267 ALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVLS 336 (438)
T ss_dssp HHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEEC
T ss_pred HHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEEe
Confidence 999 899998 999999999999999988744 54 9999999999 566999999999999999
Q ss_pred cCcchhcc
Q 041277 579 GSHDELIQ 586 (1133)
Q Consensus 579 g~~~~l~~ 586 (1133)
|+++++..
T Consensus 337 ~~~~~~~~ 344 (438)
T 2dpy_A 337 RRLAEAGH 344 (438)
T ss_dssp HHHHHTTC
T ss_pred CCHHHccC
Confidence 99887753
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-24 Score=250.15 Aligned_cols=166 Identities=19% Similarity=0.153 Sum_probs=129.9
Q ss_pred ccccceeEEeeCCC--------------------EEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHh
Q 041277 377 IIFKDFCLTIPAGK--------------------TVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLR 436 (1133)
Q Consensus 377 ~~l~~i~l~i~~g~--------------------~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r 436 (1133)
.+|+++||++++|+ ++||+||||||||||+|+|+|+++|++|+|.++|.++. |
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t-------~ 109 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-------M 109 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------C
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------e
Confidence 48999999999999 99999999999999999999999999999999997653 1
Q ss_pred hhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChH--HHHHHHHHHHH
Q 041277 437 SQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGG--QKQRIAIARAI 514 (1133)
Q Consensus 437 ~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG--qkqri~iARal 514 (1133)
.++++|++...+.|+.||+.++.+.. ++.+.++..++.+ ++..+ .|||| ||||++||||+
T Consensus 110 --~~~v~q~~~~~~ltv~D~~g~~~~~~---~~~~~L~~~~L~~--------~~~~~-----~lS~G~~~kqrv~la~aL 171 (413)
T 1tq4_A 110 --ERHPYKHPNIPNVVFWDLPGIGSTNF---PPDTYLEKMKFYE--------YDFFI-----IISATRFKKNDIDIAKAI 171 (413)
T ss_dssp --CCEEEECSSCTTEEEEECCCGGGSSC---CHHHHHHHTTGGG--------CSEEE-----EEESSCCCHHHHHHHHHH
T ss_pred --eEEeccccccCCeeehHhhcccchHH---HHHHHHHHcCCCc--------cCCeE-----EeCCCCccHHHHHHHHHH
Confidence 28899997544669999988765432 2344444444321 12221 28999 99999999999
Q ss_pred hh----------CCCEEEEeCcccCCChHHHHHHHHHHHHHh------C----CCeEEEEecCcch--hhc-CCEE
Q 041277 515 IK----------APRILLLDEATSALDSESERVVQEALDKAV------V----GRTTIIIAHRLST--IRN-ADVI 567 (1133)
Q Consensus 515 ~~----------~~~illlDE~ts~lD~~~~~~i~~~l~~~~------~----~~t~i~itH~~~~--~~~-~d~i 567 (1133)
.+ +|++++|||||++||+.+++.+.+.+++.. . .+++++.||.++. ++. ||+|
T Consensus 172 ~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 172 SMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 99 999999999999999999998888887652 1 2567788998876 554 6665
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.7e-22 Score=215.17 Aligned_cols=116 Identities=27% Similarity=0.426 Sum_probs=102.0
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcc
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHI 1080 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~i 1080 (1133)
.|+++||+|+|+.+ +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+|| +|
T Consensus 3 ~l~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i 68 (237)
T 2cbz_A 3 SITVRNATFTWARS-DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SV 68 (237)
T ss_dssp CEEEEEEEEESCTT-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CE
T ss_pred eEEEEEEEEEeCCC-CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EE
Confidence 38999999999631 34699999999999999999999999999999999999999999999999 49
Q ss_pred cccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccC
Q 041277 1081 ALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYD 1132 (1133)
Q Consensus 1081 siV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~d 1132 (1133)
+||||+|.+|+.|++|||.++.. .++++..++++.+++.+.+..+|.|++
T Consensus 69 ~~v~Q~~~~~~~tv~enl~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~ 118 (237)
T 2cbz_A 69 AYVPQQAWIQNDSLRENILFGCQ--LEEPYYRSVIQACALLPDLEILPSGDR 118 (237)
T ss_dssp EEECSSCCCCSEEHHHHHHTTSC--CCTTHHHHHHHHTTCHHHHTTSTTGGG
T ss_pred EEEcCCCcCCCcCHHHHhhCccc--cCHHHHHHHHHHHhhHHHHHhcccccc
Confidence 99999999999999999999753 234466778888888888888887765
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=99.86 E-value=2.1e-22 Score=227.16 Aligned_cols=132 Identities=23% Similarity=0.369 Sum_probs=111.4
Q ss_pred ccEEEEeEEEECCCCC-CCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHH--
Q 041277 1000 GNIELQNVHFAYPARP-DVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSL-- 1076 (1133)
Q Consensus 1000 g~I~f~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~L-- 1076 (1133)
.-|+++||+++|+.+. ..++|+||||+|++||.+||+||||||||||+++|.|++.|++|+|++||.|+..++...+
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~ 102 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 4699999999996432 2468999999999999999999999999999999999999999999999999999987654
Q ss_pred -hhcccccccccccccc-cHHHHhccCCC-CCCC----HHHHHHHHHHcchHHHHhhccccc
Q 041277 1077 -RRHIALVSQEPTLFAG-TIRENIAYGAS-DEID----ESEIVEAAKAANAHDFIAGLNEGY 1131 (1133)
Q Consensus 1077 -R~~isiV~Qdp~LF~g-TIreNI~~g~~-~~~s----deei~~Al~~a~l~dfI~~LP~G~ 1131 (1133)
|++||+|||+|.||.. |++||+.++.. ...+ .+.+.++++.+++.++..+.|..|
T Consensus 103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~L 164 (366)
T 3tui_C 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNL 164 (366)
T ss_dssp HHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTS
T ss_pred HhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhC
Confidence 7899999999999876 99999987521 1112 346788999999988877666543
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.8e-22 Score=217.61 Aligned_cols=126 Identities=21% Similarity=0.411 Sum_probs=111.1
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcc
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHI 1080 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~i 1080 (1133)
-|+++||+++|+ +.++|+||||+|++||.+|||||||||||||+++|.|+++|++|+|.+||.|+.+.+.+.+|+.+
T Consensus 11 ~l~~~~l~~~~~---~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i 87 (266)
T 4g1u_C 11 LLEASHLHYHVQ---QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTR 87 (266)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHE
T ss_pred eEEEEeEEEEeC---CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheE
Confidence 599999999995 34699999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccc-ccccHHHHhccCCC---CCCCHHHHHHHHHHcchHHHHhhccc
Q 041277 1081 ALVSQEPTL-FAGTIRENIAYGAS---DEIDESEIVEAAKAANAHDFIAGLNE 1129 (1133)
Q Consensus 1081 siV~Qdp~L-F~gTIreNI~~g~~---~~~sdeei~~Al~~a~l~dfI~~LP~ 1129 (1133)
++|||++.+ |..|++||+.++.. ....++++.++++..++.++..+.|.
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 140 (266)
T 4g1u_C 88 AVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYR 140 (266)
T ss_dssp EEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGG
T ss_pred EEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcc
Confidence 999999987 77899999998742 12235678899999998776655554
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.85 E-value=4e-22 Score=215.50 Aligned_cols=125 Identities=25% Similarity=0.435 Sum_probs=103.1
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHH-hhc
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSL-RRH 1079 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~L-R~~ 1079 (1133)
-|+++||+++|++ .++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+.+...+ |++
T Consensus 6 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (240)
T 1ji0_A 6 VLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred eEEEEeEEEEECC---eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence 4899999999953 459999999999999999999999999999999999999999999999999998887765 456
Q ss_pred ccccccccccccc-cHHHHhccCC-CC-CCC--HHHHHHHHHHc-chHHHHhhcc
Q 041277 1080 IALVSQEPTLFAG-TIRENIAYGA-SD-EID--ESEIVEAAKAA-NAHDFIAGLN 1128 (1133)
Q Consensus 1080 isiV~Qdp~LF~g-TIreNI~~g~-~~-~~s--deei~~Al~~a-~l~dfI~~LP 1128 (1133)
|+||||+|.+|.+ |++||+.++. +. ... ++.+.++++.. ++.++..+.|
T Consensus 83 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~ 137 (240)
T 1ji0_A 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLG 137 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBS
T ss_pred EEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCCh
Confidence 9999999999987 9999999863 11 111 23455666666 3766554444
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.85 E-value=4e-22 Score=216.73 Aligned_cols=126 Identities=21% Similarity=0.333 Sum_probs=108.1
Q ss_pred ccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhc
Q 041277 1000 GNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRH 1079 (1133)
Q Consensus 1000 g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~ 1079 (1133)
+.|+++||+++|+ +.++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++.+ ....+|++
T Consensus 14 ~~l~i~~l~~~y~---~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~ 89 (256)
T 1vpl_A 14 GAVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKL 89 (256)
T ss_dssp CCEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTT
T ss_pred CeEEEEEEEEEEC---CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhc
Confidence 5799999999995 3469999999999999999999999999999999999999999999999999976 56778999
Q ss_pred ccccccccccccc-cHHHHhccCCC-CCCC----HHHHHHHHHHcchHHHHhhccc
Q 041277 1080 IALVSQEPTLFAG-TIRENIAYGAS-DEID----ESEIVEAAKAANAHDFIAGLNE 1129 (1133)
Q Consensus 1080 isiV~Qdp~LF~g-TIreNI~~g~~-~~~s----deei~~Al~~a~l~dfI~~LP~ 1129 (1133)
|++|||+|.+|.+ |++||+.++.. ...+ ++++.++++..++.++..+.|.
T Consensus 90 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 145 (256)
T 1vpl_A 90 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVS 145 (256)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGG
T ss_pred EEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChh
Confidence 9999999999987 99999987421 0112 2468889999999887666554
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.9e-22 Score=217.57 Aligned_cols=127 Identities=22% Similarity=0.404 Sum_probs=107.6
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccC--CCChhHHhh
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIR--SYHLRSLRR 1078 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~--~i~l~~LR~ 1078 (1133)
-|+++||+++|++ .++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+. ..+...+|+
T Consensus 24 ~l~i~~l~~~y~~---~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 100 (263)
T 2olj_A 24 MIDVHQLKKSFGS---LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE 100 (263)
T ss_dssp SEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC
Confidence 5999999999952 35999999999999999999999999999999999999999999999999985 345567899
Q ss_pred cccccccccccccc-cHHHHhccCC--CCCCC----HHHHHHHHHHcchHHHHhhcccc
Q 041277 1079 HIALVSQEPTLFAG-TIRENIAYGA--SDEID----ESEIVEAAKAANAHDFIAGLNEG 1130 (1133)
Q Consensus 1079 ~isiV~Qdp~LF~g-TIreNI~~g~--~~~~s----deei~~Al~~a~l~dfI~~LP~G 1130 (1133)
+|+||||+|.+|.. |++||+.++. ....+ ++++.++++..++.++..+.|..
T Consensus 101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~ 159 (263)
T 2olj_A 101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDS 159 (263)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGG
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhh
Confidence 99999999999987 9999998752 11112 35678899999998876665543
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.85 E-value=7e-22 Score=216.86 Aligned_cols=127 Identities=25% Similarity=0.414 Sum_probs=108.1
Q ss_pred EEEEeEEEECCCCCC--CccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhc
Q 041277 1002 IELQNVHFAYPARPD--VMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRH 1079 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~--~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~ 1079 (1133)
|+++||+++|+.+.. .++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++.+. .+|++
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~ 79 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN 79 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGGG
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhhh
Confidence 799999999962111 4699999999999999999999999999999999999999999999999998642 78899
Q ss_pred cccccccc--ccccccHHHHhccCCC----CCCCHHHHHHHHHHcchH--HHHhhccccc
Q 041277 1080 IALVSQEP--TLFAGTIRENIAYGAS----DEIDESEIVEAAKAANAH--DFIAGLNEGY 1131 (1133)
Q Consensus 1080 isiV~Qdp--~LF~gTIreNI~~g~~----~~~sdeei~~Al~~a~l~--dfI~~LP~G~ 1131 (1133)
|++|||+| .+|+.|++||+.++.. ....++++.++++.+++. ++..+.|..|
T Consensus 80 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~L 139 (266)
T 2yz2_A 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFL 139 (266)
T ss_dssp EEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGS
T ss_pred EEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhC
Confidence 99999997 5788999999998632 122356789999999998 8887776543
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=99.85 E-value=4.6e-22 Score=212.67 Aligned_cols=126 Identities=21% Similarity=0.271 Sum_probs=106.0
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhH---Hh
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRS---LR 1077 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~---LR 1077 (1133)
-|+++||+++|++ .++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+...+... +|
T Consensus 4 ~l~~~~l~~~y~~---~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (224)
T 2pcj_A 4 ILRAENIKKVIRG---YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLR 80 (224)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHH
T ss_pred EEEEEeEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHH
Confidence 3899999999953 46999999999999999999999999999999999999999999999999998887653 44
Q ss_pred -hccccccccccccc-ccHHHHhccCCC--C---CCCHHHHHHHHHHcchHHHHhhccc
Q 041277 1078 -RHIALVSQEPTLFA-GTIRENIAYGAS--D---EIDESEIVEAAKAANAHDFIAGLNE 1129 (1133)
Q Consensus 1078 -~~isiV~Qdp~LF~-gTIreNI~~g~~--~---~~sdeei~~Al~~a~l~dfI~~LP~ 1129 (1133)
++|++|||+|.+|. .|++||+.++.. . ...++++.++++..++.++..+.|.
T Consensus 81 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 139 (224)
T 2pcj_A 81 NRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPY 139 (224)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGG
T ss_pred hCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChh
Confidence 78999999999987 499999987421 1 1123568889999998877665554
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.85 E-value=5.5e-22 Score=209.44 Aligned_cols=119 Identities=21% Similarity=0.429 Sum_probs=103.3
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcc
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHI 1080 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~i 1080 (1133)
.|+++||+++|+ + ++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++. .+|++|
T Consensus 10 ~l~~~~ls~~y~---~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i 80 (214)
T 1sgw_A 10 KLEIRDLSVGYD---K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKI 80 (214)
T ss_dssp EEEEEEEEEESS---S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGE
T ss_pred eEEEEEEEEEeC---C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcE
Confidence 699999999995 3 5999999999999999999999999999999999999999999999999986 368999
Q ss_pred cccccccccccc-cHHHHhccCCC--C-CCCHHHHHHHHHHcchHHHHhhccc
Q 041277 1081 ALVSQEPTLFAG-TIRENIAYGAS--D-EIDESEIVEAAKAANAHDFIAGLNE 1129 (1133)
Q Consensus 1081 siV~Qdp~LF~g-TIreNI~~g~~--~-~~sdeei~~Al~~a~l~dfI~~LP~ 1129 (1133)
+||||+|.+|.+ |++||+.++.. . ...++++.++++..++.++ .+.|.
T Consensus 81 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~ 132 (214)
T 1sgw_A 81 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL-KKKLG 132 (214)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT-TSBGG
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC-CCChh
Confidence 999999999987 99999987521 1 1236789999999998766 54443
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.85 E-value=6.3e-22 Score=218.02 Aligned_cols=126 Identities=21% Similarity=0.305 Sum_probs=106.6
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccC--CCChhHHhh
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIR--SYHLRSLRR 1078 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~--~i~l~~LR~ 1078 (1133)
-|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.|+. ..+...+|+
T Consensus 21 ~l~~~~l~~~y~~---~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 97 (279)
T 2ihy_A 21 LIQLDQIGRMKQG---KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQ 97 (279)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHT
T ss_pred eEEEEeEEEEECC---EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcC
Confidence 5999999999953 35999999999999999999999999999999999999999999999999998 778888999
Q ss_pred ccccccccccc-ccc--cHHHHhccCCCC------CCC---HHHHHHHHHHcchHHHHhhccc
Q 041277 1079 HIALVSQEPTL-FAG--TIRENIAYGASD------EID---ESEIVEAAKAANAHDFIAGLNE 1129 (1133)
Q Consensus 1079 ~isiV~Qdp~L-F~g--TIreNI~~g~~~------~~s---deei~~Al~~a~l~dfI~~LP~ 1129 (1133)
+|++|||+|.+ |.. |++|||.++... ... .+++.++++..++.++..+.|.
T Consensus 98 ~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~ 160 (279)
T 2ihy_A 98 HIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIG 160 (279)
T ss_dssp TEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGG
T ss_pred cEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChh
Confidence 99999999975 555 999999986311 012 3467888999999877665544
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=99.85 E-value=1.4e-21 Score=211.60 Aligned_cols=121 Identities=21% Similarity=0.278 Sum_probs=107.9
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhccc
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIA 1081 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~is 1081 (1133)
|+++||+++ ++|+|+||+|++||.+||+||||||||||+++|.|+++|+ |+|.+||.|+.+.+...+|++++
T Consensus 5 l~~~~l~~~-------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~ 76 (249)
T 2qi9_C 5 MQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRA 76 (249)
T ss_dssp EEEEEEEET-------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEE
T ss_pred EEEEceEEE-------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEE
Confidence 899999986 3899999999999999999999999999999999999999 99999999999989999999999
Q ss_pred ccccccccccc-cHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccc
Q 041277 1082 LVSQEPTLFAG-TIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEG 1130 (1133)
Q Consensus 1082 iV~Qdp~LF~g-TIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G 1130 (1133)
||||+|.+|.+ |++||+.++.....+++++.++++..++.++..+.|..
T Consensus 77 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 126 (249)
T 2qi9_C 77 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQ 126 (249)
T ss_dssp EECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGG
T ss_pred EECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhh
Confidence 99999998875 99999998742122477899999999998877655543
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-21 Score=213.22 Aligned_cols=126 Identities=21% Similarity=0.292 Sum_probs=106.4
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCCh-hHHhhc
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHL-RSLRRH 1079 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l-~~LR~~ 1079 (1133)
-|+++||+++|++ .++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+.+. +.+|++
T Consensus 7 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 7 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEeeeEEEECC---EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 4999999999953 359999999999999999999999999999999999999999999999999987765 346889
Q ss_pred cccccccccccc-ccHHHHhccCCCC---C-----------CC----HHHHHHHHHHcchHHHHhhccc
Q 041277 1080 IALVSQEPTLFA-GTIRENIAYGASD---E-----------ID----ESEIVEAAKAANAHDFIAGLNE 1129 (1133)
Q Consensus 1080 isiV~Qdp~LF~-gTIreNI~~g~~~---~-----------~s----deei~~Al~~a~l~dfI~~LP~ 1129 (1133)
|++|||+|.+|. .|++||+.++... . .+ .+++.++++..++.++..+.|.
T Consensus 84 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 152 (257)
T 1g6h_A 84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAG 152 (257)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGG
T ss_pred EEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCch
Confidence 999999999986 5999999886311 1 11 3457888999998877665554
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.84 E-value=7.8e-23 Score=227.95 Aligned_cols=176 Identities=18% Similarity=0.244 Sum_probs=126.5
Q ss_pred ccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCC----HHHH--hhhceEEecCCC-Cccc
Q 041277 379 FKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQ----LKWL--RSQMGLVSQEPA-LFAT 451 (1133)
Q Consensus 379 l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~----~~~~--r~~i~~v~Q~~~-l~~~ 451 (1133)
++++||++++|++++|+|||||||||+++.|+|+++|++|+|.++|.|+.... ...+ |.+++|++|++. +++.
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~ 169 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 169 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence 35688999999999999999999999999999999999999999999886542 1233 457999999998 7654
Q ss_pred -cHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCC--EEEEeCccc
Q 041277 452 -SIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPR--ILLLDEATS 528 (1133)
Q Consensus 452 -ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~--illlDE~ts 528 (1133)
|++||+.++.....+. ..++.++ ..........+|| |||++||||+..+|+ +|+|| ||+
T Consensus 170 ~~v~e~l~~~~~~~~d~---~lldt~g-----------l~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pts 231 (302)
T 3b9q_A 170 TVLSKAVKRGKEEGYDV---VLCDTSG-----------RLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNT 231 (302)
T ss_dssp HHHHHHHHHHHHTTCSE---EEECCCC-----------CSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGG
T ss_pred HHHHHHHHHHHHcCCcc---hHHhcCC-----------CCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCC
Confidence 9999998642110000 0111111 1111111223588 999999999999999 99999 999
Q ss_pred CCChHHHHHHHHHHHHHhCCCeEEEEec---------Ccchhhc-CCEEEEEeCCeEE
Q 041277 529 ALDSESERVVQEALDKAVVGRTTIIIAH---------RLSTIRN-ADVIAVVQDGQVM 576 (1133)
Q Consensus 529 ~lD~~~~~~i~~~l~~~~~~~t~i~itH---------~~~~~~~-~d~i~~l~~G~i~ 576 (1133)
++|+.++. +.+.+ ..+.|+|++|| .++.+.. .+.|.++..|+.+
T Consensus 232 glD~~~~~---~~~~~-~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~ 285 (302)
T 3b9q_A 232 GLNMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 285 (302)
T ss_dssp GGGGHHHH---HHHHH-HTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred CcCHHHHH---HHHHH-hcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCCh
Confidence 99998652 11211 24899999999 3344433 7899999999753
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-21 Score=221.21 Aligned_cols=128 Identities=20% Similarity=0.414 Sum_probs=108.3
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCC--CChhHHhh
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRS--YHLRSLRR 1078 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~--i~l~~LR~ 1078 (1133)
.|+++||+++|+ +.++|+||||+|++||.+||+||||||||||+++|.|+.+|++|+|.+||.|+.+ .+....|+
T Consensus 4 ~l~i~~ls~~y~---~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r 80 (359)
T 3fvq_A 4 ALHIGHLSKSFQ---NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER 80 (359)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred EEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhC
Confidence 489999999995 3469999999999999999999999999999999999999999999999999933 23445678
Q ss_pred cccccccccccccc-cHHHHhccCCCC-----CCCHHHHHHHHHHcchHHHHhhccccc
Q 041277 1079 HIALVSQEPTLFAG-TIRENIAYGASD-----EIDESEIVEAAKAANAHDFIAGLNEGY 1131 (1133)
Q Consensus 1079 ~isiV~Qdp~LF~g-TIreNI~~g~~~-----~~sdeei~~Al~~a~l~dfI~~LP~G~ 1131 (1133)
+||+|||++.||.. |++|||.|+... ...++++.++++.+++.++..+.|..|
T Consensus 81 ~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~L 139 (359)
T 3fvq_A 81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHEL 139 (359)
T ss_dssp CCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGS
T ss_pred CEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhC
Confidence 99999999999964 999999997421 112456889999999998877776544
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.8e-21 Score=213.02 Aligned_cols=127 Identities=21% Similarity=0.344 Sum_probs=106.7
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccC----------C
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIR----------S 1070 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~----------~ 1070 (1133)
-|+++||+++|++ .++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+. +
T Consensus 6 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (262)
T 1b0u_A 6 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 82 (262)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccc
Confidence 4999999999953 45999999999999999999999999999999999999999999999999986 2
Q ss_pred CCh---hHHhhcccccccccccccc-cHHHHhccCC--CCCCC----HHHHHHHHHHcchHHH-Hhhcccc
Q 041277 1071 YHL---RSLRRHIALVSQEPTLFAG-TIRENIAYGA--SDEID----ESEIVEAAKAANAHDF-IAGLNEG 1130 (1133)
Q Consensus 1071 i~l---~~LR~~isiV~Qdp~LF~g-TIreNI~~g~--~~~~s----deei~~Al~~a~l~df-I~~LP~G 1130 (1133)
++. ..+|++|++|||++.+|.. |++||+.++. ....+ ++++.++++..++.++ ..+.|..
T Consensus 83 ~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~ 153 (262)
T 1b0u_A 83 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVH 153 (262)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGG
T ss_pred cChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCccc
Confidence 443 3568899999999999987 9999998742 11112 3568889999999988 6665543
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-21 Score=221.84 Aligned_cols=126 Identities=22% Similarity=0.408 Sum_probs=108.9
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcc
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHI 1080 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~i 1080 (1133)
.|+++||+++|+ +..+|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+.+.. +++|
T Consensus 3 ~l~~~~l~~~yg---~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~i 77 (381)
T 3rlf_A 3 SVQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGV 77 (381)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCE
T ss_pred EEEEEeEEEEEC---CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCE
Confidence 489999999995 34699999999999999999999999999999999999999999999999999988876 4789
Q ss_pred cccccccccccc-cHHHHhccCCC-CCCC----HHHHHHHHHHcchHHHHhhccccc
Q 041277 1081 ALVSQEPTLFAG-TIRENIAYGAS-DEID----ESEIVEAAKAANAHDFIAGLNEGY 1131 (1133)
Q Consensus 1081 siV~Qdp~LF~g-TIreNI~~g~~-~~~s----deei~~Al~~a~l~dfI~~LP~G~ 1131 (1133)
++|+|++.||.. |++|||.||.. ...+ ++++.++++..++.++..+.|..|
T Consensus 78 g~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~L 134 (381)
T 3rlf_A 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKAL 134 (381)
T ss_dssp EEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGS
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHC
Confidence 999999999975 99999998621 1122 356888999999998877777644
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.9e-20 Score=212.64 Aligned_cols=81 Identities=19% Similarity=0.241 Sum_probs=75.3
Q ss_pred CCChHHHHHHHHHHHHh---------hCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEE
Q 041277 499 QMSGGQKQRIAIARAII---------KAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAV 569 (1133)
Q Consensus 499 ~LSgGqkqri~iARal~---------~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~ 569 (1133)
.||||||||++|||+|+ .+|+|||||||||+||+..++.+.+.+.+.. .|+|++|| ++. .||++++
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th-~~~--~~~~i~~ 339 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTE-LAP--GAALTLR 339 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESS-CCT--TCSEEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEe-ccc--cCCEEEE
Confidence 59999999999999999 8999999999999999999999999998764 79999999 444 8999999
Q ss_pred EeCCeEEeecCcchh
Q 041277 570 VQDGQVMETGSHDEL 584 (1133)
Q Consensus 570 l~~G~i~~~g~~~~l 584 (1133)
|++|++++.|+++++
T Consensus 340 l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 340 AQAGRFTPVADEEMQ 354 (359)
T ss_dssp EETTEEEECCCTTTS
T ss_pred EECCEEEecCCHHHH
Confidence 999999999999887
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.9e-21 Score=219.02 Aligned_cols=126 Identities=27% Similarity=0.451 Sum_probs=108.0
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcc
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHI 1080 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~i 1080 (1133)
.|+++||+++|++ .++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+++.. +++|
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (362)
T 2it1_A 3 EIKLENIVKKFGN---FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNV 77 (362)
T ss_dssp CEEEEEEEEESSS---SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcE
Confidence 3899999999952 3589999999999999999999999999999999999999999999999999887764 5789
Q ss_pred cccccccccccc-cHHHHhccCCC-CCCC----HHHHHHHHHHcchHHHHhhccccc
Q 041277 1081 ALVSQEPTLFAG-TIRENIAYGAS-DEID----ESEIVEAAKAANAHDFIAGLNEGY 1131 (1133)
Q Consensus 1081 siV~Qdp~LF~g-TIreNI~~g~~-~~~s----deei~~Al~~a~l~dfI~~LP~G~ 1131 (1133)
++|||++.||.. |++|||.|+.. ...+ ++++.++++..++.++..+.|..|
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~L 134 (362)
T 2it1_A 78 GLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQL 134 (362)
T ss_dssp EEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGS
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhC
Confidence 999999999975 99999998621 0112 356888999999988877766543
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.9e-21 Score=217.17 Aligned_cols=128 Identities=28% Similarity=0.472 Sum_probs=108.9
Q ss_pred ccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhc
Q 041277 1000 GNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRH 1079 (1133)
Q Consensus 1000 g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~ 1079 (1133)
..|+++||+++|++ +.++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+.+. .|++
T Consensus 13 ~~l~~~~l~~~y~g--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 88 (355)
T 1z47_A 13 MTIEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRN 88 (355)
T ss_dssp EEEEEEEEEECCTT--STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSS
T ss_pred ceEEEEEEEEEEcC--CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCc
Confidence 46999999999931 2358999999999999999999999999999999999999999999999999987654 4789
Q ss_pred ccccccccccccc-cHHHHhccCCC-CCCC----HHHHHHHHHHcchHHHHhhccccc
Q 041277 1080 IALVSQEPTLFAG-TIRENIAYGAS-DEID----ESEIVEAAKAANAHDFIAGLNEGY 1131 (1133)
Q Consensus 1080 isiV~Qdp~LF~g-TIreNI~~g~~-~~~s----deei~~Al~~a~l~dfI~~LP~G~ 1131 (1133)
|++|||++.||.. |++|||.|+.. ...+ ++++.++++..++.++..+.|..|
T Consensus 89 ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~L 146 (355)
T 1z47_A 89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHEL 146 (355)
T ss_dssp EEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGS
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccC
Confidence 9999999999975 99999988621 0112 456889999999998877766543
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.1e-21 Score=218.58 Aligned_cols=126 Identities=26% Similarity=0.427 Sum_probs=108.7
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcc
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHI 1080 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~i 1080 (1133)
.|+++||+++|+ +.++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+++.. |++|
T Consensus 3 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (359)
T 2yyz_A 3 SIRVVNLKKYFG---KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREV 77 (359)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEEEEEEEC---CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcE
Confidence 389999999995 34589999999999999999999999999999999999999999999999999887754 6889
Q ss_pred cccccccccccc-cHHHHhccCCCC-CC----CHHHHHHHHHHcchHHHHhhccccc
Q 041277 1081 ALVSQEPTLFAG-TIRENIAYGASD-EI----DESEIVEAAKAANAHDFIAGLNEGY 1131 (1133)
Q Consensus 1081 siV~Qdp~LF~g-TIreNI~~g~~~-~~----sdeei~~Al~~a~l~dfI~~LP~G~ 1131 (1133)
++|||++.||.. |++|||.|+... .. .++++.++++..++.++..+.|..|
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~L 134 (359)
T 2yyz_A 78 GMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQL 134 (359)
T ss_dssp EEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGS
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhC
Confidence 999999999975 999999987321 11 1346889999999998877766543
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.8e-21 Score=218.96 Aligned_cols=126 Identities=22% Similarity=0.391 Sum_probs=102.9
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcc
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHI 1080 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~i 1080 (1133)
.|+++||+++|++ .++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+++.. +++|
T Consensus 11 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 85 (372)
T 1v43_A 11 EVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 85 (372)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcE
Confidence 4999999999952 4589999999999999999999999999999999999999999999999999887754 6789
Q ss_pred cccccccccccc-cHHHHhccCCCC-CCC----HHHHHHHHHHcchHHHHhhccccc
Q 041277 1081 ALVSQEPTLFAG-TIRENIAYGASD-EID----ESEIVEAAKAANAHDFIAGLNEGY 1131 (1133)
Q Consensus 1081 siV~Qdp~LF~g-TIreNI~~g~~~-~~s----deei~~Al~~a~l~dfI~~LP~G~ 1131 (1133)
++|||++.||.. |++|||.|+... ..+ ++++.++++..++.++..+.|..|
T Consensus 86 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~L 142 (372)
T 1v43_A 86 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQL 142 (372)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTC
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhC
Confidence 999999999965 999999997421 122 346888999999988877766543
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.7e-22 Score=221.91 Aligned_cols=147 Identities=17% Similarity=0.168 Sum_probs=96.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccc-cHHHHHhcCCCCC---CH
Q 041277 391 TVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFAT-SIKENILFGKEDA---SM 466 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eni~~~~~~~---~~ 466 (1133)
.++|+||||||||||+++|+|+..|++|+|.++|.++.. ...++.++|++|++.++.. ||.||+.||.... ..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 589999999999999999999999999999999988743 2335679999999988865 9999999986422 12
Q ss_pred HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh
Q 041277 467 EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV 546 (1133)
Q Consensus 467 ~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~ 546 (1133)
+.+.+... .++...++ .+||||||||+++|||++. +++||||+++||+...+ .++.+.
T Consensus 81 ~~i~~~~~----~~~~~~~~-----------~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~~----~l~~L~ 138 (270)
T 3sop_A 81 EPIEKYIN----EQYEKFLK-----------EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDLE----FMKHLS 138 (270)
T ss_dssp HHHHHHHH----HHHHHHHH-----------HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHHH----HHHHHH
T ss_pred HHHHHHHH----HHHHhhhH-----------HhcCcccchhhhhheeeee---eEEEecCCCcCCHHHHH----HHHHHH
Confidence 23333332 23333333 2699999999999999875 99999999999998632 333333
Q ss_pred CCCeEEEEecCcchhh
Q 041277 547 VGRTTIIIAHRLSTIR 562 (1133)
Q Consensus 547 ~~~t~i~itH~~~~~~ 562 (1133)
+..++|+|.|+.+.+.
T Consensus 139 ~~~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 139 KVVNIIPVIAKADTMT 154 (270)
T ss_dssp TTSEEEEEETTGGGSC
T ss_pred hcCcEEEEEeccccCC
Confidence 3489999999887663
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=99.82 E-value=5.1e-21 Score=216.18 Aligned_cols=124 Identities=22% Similarity=0.450 Sum_probs=107.3
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhccc
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIA 1081 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~is 1081 (1133)
|+++||+++|+ +. +|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+.+. .|++|+
T Consensus 2 l~~~~l~~~y~---~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig 75 (348)
T 3d31_A 2 IEIESLSRKWK---NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIA 75 (348)
T ss_dssp EEEEEEEEECS---SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCE
T ss_pred EEEEEEEEEEC---CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEE
Confidence 78999999995 23 8999999999999999999999999999999999999999999999999987554 578999
Q ss_pred ccccccccccc-cHHHHhccCCC--CCCCHHHHHHHHHHcchHHHHhhccccc
Q 041277 1082 LVSQEPTLFAG-TIRENIAYGAS--DEIDESEIVEAAKAANAHDFIAGLNEGY 1131 (1133)
Q Consensus 1082 iV~Qdp~LF~g-TIreNI~~g~~--~~~sdeei~~Al~~a~l~dfI~~LP~G~ 1131 (1133)
+|||++.||.. |++|||.|+.. ....++++.++++..++.++..+.|..|
T Consensus 76 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~L 128 (348)
T 3d31_A 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTL 128 (348)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGS
T ss_pred EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhC
Confidence 99999999986 99999998621 0112378999999999988877766543
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.82 E-value=4.6e-21 Score=206.48 Aligned_cols=121 Identities=22% Similarity=0.352 Sum_probs=103.3
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhccc
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIA 1081 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~is 1081 (1133)
|+++||+++|+ + +|+|+||+|++ |.+||+||||||||||+++|.|+++|++|+|.+||.|+.+.+ ..|++|+
T Consensus 2 l~~~~l~~~y~---~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~ 73 (240)
T 2onk_A 2 FLKVRAEKRLG---N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIG 73 (240)
T ss_dssp CEEEEEEEEET---T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCB
T ss_pred EEEEEEEEEeC---C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEE
Confidence 68999999994 2 59999999999 999999999999999999999999999999999999997643 4578999
Q ss_pred ccccccccccc-cHHHHhccCCCCC---CCHHHHHHHHHHcchHHHHhhcccc
Q 041277 1082 LVSQEPTLFAG-TIRENIAYGASDE---IDESEIVEAAKAANAHDFIAGLNEG 1130 (1133)
Q Consensus 1082 iV~Qdp~LF~g-TIreNI~~g~~~~---~sdeei~~Al~~a~l~dfI~~LP~G 1130 (1133)
+|||+|.+|.. |++||+.++.... ..++++.++++..++.++..+.|..
T Consensus 74 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 126 (240)
T 2onk_A 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPAR 126 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGG
T ss_pred EEcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhh
Confidence 99999999987 9999999874210 1245788899999998876665543
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.5e-23 Score=233.00 Aligned_cols=166 Identities=16% Similarity=0.136 Sum_probs=121.9
Q ss_pred HHHHHHHHHHhccCCCCCCCCCcccccccccccEEEEEEEEEcCCCCCCccccceeEE----------------------
Q 041277 328 MAAGERIMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLT---------------------- 385 (1133)
Q Consensus 328 ~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~---------------------- 385 (1133)
+.++.|+.+.+..+... .+.......++.|+++||++.|. ++++++++.
T Consensus 15 r~~~~~l~~~~~~~~~~----~~~~~l~~~~~~i~~~~v~~~y~-----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 85 (312)
T 3aez_A 15 RRQWRALRMSTPLALTE----EELVGLRGLGEQIDLLEVEEVYL-----PLARLIHLQVAARQRLFAATAEFLGEPQQNP 85 (312)
T ss_dssp HHHHHGGGTTCCCCCCH----HHHHTTCCTTCCCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCS
T ss_pred HHHHHHHHhcCCCCCCH----HHHHhccCCCCeEEeeehhhhhh-----hHHHHHHHHHhhhhHHHHHHHHhhccccccc
Confidence 45566665544432211 11122233456799999999994 367777765
Q ss_pred -eeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCC---
Q 041277 386 -IPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGK--- 461 (1133)
Q Consensus 386 -i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~--- 461 (1133)
+++|+++||+||||||||||+++|.|+++|..|. +++++|+|++.+++.|++||+.+..
T Consensus 86 ~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g 148 (312)
T 3aez_A 86 DRPVPFIIGVAGSVAVGKSTTARVLQALLARWDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKG 148 (312)
T ss_dssp SSCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTT
T ss_pred CCCCCEEEEEECCCCchHHHHHHHHHhhccccCCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcC
Confidence 8999999999999999999999999999998663 3699999999999889999997532
Q ss_pred -CC-CCHHHHHHHHHHhchHHHHHhCCCccc-ccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCCh
Q 041277 462 -ED-ASMEEVIEAAKASNAHNFIRQLPQQYD-TQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDS 532 (1133)
Q Consensus 462 -~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~ 532 (1133)
+. ...+.+ .++++.+..|.. .. ...|||||+||+++|||++.+|+|+|||||++.+|+
T Consensus 149 ~~~~~d~~~~---------~~~L~~l~~~~~~~~----~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 149 FPESYNRRAL---------MRFVTSVKSGSDYAC----APVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp SGGGBCHHHH---------HHHHHHHHTTCSCEE----EEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred CChHHHHHHH---------HHHHHHhCCCcccCC----cccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 21 112222 233444433432 22 247999999999999999999999999999999986
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.8e-22 Score=223.21 Aligned_cols=158 Identities=15% Similarity=0.206 Sum_probs=126.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCcccEEEEeEEEECCC
Q 041277 934 GYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRYTKIEPEDPEGHQPERITGNIELQNVHFAYPA 1013 (1133)
Q Consensus 934 g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~ 1013 (1133)
+..+.+...+|+.+... ..++..+..++..+.++..+.+|+.++++.+++... +... .++..+.|+|+||+|+|+
T Consensus 38 ~~~~~~n~~afl~~~~q-~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~--~~~~-~~~~~~~i~~~~vs~~y~- 112 (305)
T 2v9p_A 38 AAGSDSNARAFLATNSQ-AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLAT--GEGS-WKSILTFFNYQNIELITF- 112 (305)
T ss_dssp TTTTCHHHHHHTTCTTH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCC--SSCC-THHHHHHHHHTTCCHHHH-
T ss_pred hcCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC--CCCc-ccccCCeEEEEEEEEEcC-
Confidence 44556667777766555 578999999999999999999999999986543221 1111 112235699999999995
Q ss_pred CCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhccccccccccccccc
Q 041277 1014 RPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGT 1093 (1133)
Q Consensus 1014 ~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gT 1093 (1133)
.++|+|+||+|++|+++|||||||||||||+++|+|+| +|+| +++|+|+|.||++|
T Consensus 113 ---~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~lf~~t 168 (305)
T 2v9p_A 113 ---INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSHFWLAS 168 (305)
T ss_dssp ---HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSGGGGGG
T ss_pred ---hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCcccccccc
Confidence 35999999999999999999999999999999999999 7999 46899999999999
Q ss_pred HHH-HhccCCCCCCCHHHHHHHHHHcchHHHHhh-cccccC
Q 041277 1094 IRE-NIAYGASDEIDESEIVEAAKAANAHDFIAG-LNEGYD 1132 (1133)
Q Consensus 1094 Ire-NI~~g~~~~~sdeei~~Al~~a~l~dfI~~-LP~G~d 1132 (1133)
++| ||.++ + +.++ +++++|+. ||+|||
T Consensus 169 i~~~ni~~~-~-~~~~----------~~~~~i~~~L~~gld 197 (305)
T 2v9p_A 169 LADTRAALV-D-DATH----------ACWRYFDTYLRNALD 197 (305)
T ss_dssp GTTCSCEEE-E-EECH----------HHHHHHHHTTTGGGG
T ss_pred HHHHhhccC-c-cccH----------HHHHHHHHHhHccCC
Confidence 998 99997 3 3443 35678887 898886
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.82 E-value=6.2e-22 Score=224.32 Aligned_cols=174 Identities=19% Similarity=0.249 Sum_probs=127.0
Q ss_pred cceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCC----HHHH--hhhceEEecCCC-Ccc-c
Q 041277 380 KDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQ----LKWL--RSQMGLVSQEPA-LFA-T 451 (1133)
Q Consensus 380 ~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~----~~~~--r~~i~~v~Q~~~-l~~-~ 451 (1133)
.++||++++|++++|+|||||||||+++.|+|+++|++|+|.++|.|+.... ...+ |..|+|++|++. +++ .
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 4578899999999999999999999999999999999999999999886542 1222 457999999987 665 4
Q ss_pred cHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCC--EEEEeCcccC
Q 041277 452 SIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPR--ILLLDEATSA 529 (1133)
Q Consensus 452 ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~--illlDE~ts~ 529 (1133)
|++||+.++.....+. ..++.++ ..........+|| |||++||||+..+|+ +|+|| ||++
T Consensus 228 tv~e~l~~~~~~~~d~---~lldt~G-----------l~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttg 289 (359)
T 2og2_A 228 VLSKAVKRGKEEGYDV---VLCDTSG-----------RLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTG 289 (359)
T ss_dssp HHHHHHHHHHHTTCSE---EEEECCC-----------CSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGG
T ss_pred hHHHHHHHHHhCCCHH---HHHHhcC-----------CChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCC
Confidence 9999998642110000 0111111 1111111223588 999999999999999 99999 9999
Q ss_pred CChHHHHHHHHHHHHHhCCCeEEEEec---------Ccchhhc-CCEEEEEeCCeE
Q 041277 530 LDSESERVVQEALDKAVVGRTTIIIAH---------RLSTIRN-ADVIAVVQDGQV 575 (1133)
Q Consensus 530 lD~~~~~~i~~~l~~~~~~~t~i~itH---------~~~~~~~-~d~i~~l~~G~i 575 (1133)
+|+.++.. .+.+ ..+.|+|++|| .++.+.. .+.|.++..|+.
T Consensus 290 lD~~~~~~---~~~~-~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 290 LNMLPQAR---EFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp GGGHHHHH---HHHH-HTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CCHHHHHH---HHHH-hcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 99986531 1211 24899999999 3344433 789999999964
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-22 Score=215.59 Aligned_cols=168 Identities=15% Similarity=0.151 Sum_probs=110.6
Q ss_pred CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccc-cHH
Q 041277 376 SIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFAT-SIK 454 (1133)
Q Consensus 376 ~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-ti~ 454 (1133)
.++++| .++++||+++|+||||||||||+++|+|+++. |.+++.....-.....++.++|++|++.+|.. |+.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~----i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN----LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTT----CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc----eEEcccccccCCcccccCCCeeEecCHHHHHHHHhc
Confidence 358888 79999999999999999999999999999963 44443221111112235679999999988764 777
Q ss_pred HHHhc-----CC-C--CCCHHHHHHH----------HHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhh
Q 041277 455 ENILF-----GK-E--DASMEEVIEA----------AKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIK 516 (1133)
Q Consensus 455 eni~~-----~~-~--~~~~~~~~~~----------~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~ 516 (1133)
+|+.. ++ . ....+++.+. ++..++.++....|. .|| |++.
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----------~lS-----------~l~~ 140 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPE-----------AVT-----------VFLA 140 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTT-----------SEE-----------EEEE
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCC-----------cEE-----------EEEE
Confidence 77632 10 0 0122233222 223344444444432 455 8999
Q ss_pred CCCEEEEeCcccCC----ChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEe
Q 041277 517 APRILLLDEATSAL----DSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQ 571 (1133)
Q Consensus 517 ~~~illlDE~ts~l----D~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~ 571 (1133)
+|++++|||||+++ |+..++.+.+.++++. .+.|+|+|||+++.+.. ||+|++|.
T Consensus 141 ~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 141 PPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp CSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 99999999999998 6778888999888774 48999999999998875 99999984
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=5.9e-21 Score=207.66 Aligned_cols=124 Identities=20% Similarity=0.350 Sum_probs=102.3
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhh--cCCCCCeEEECCcccCCCChhHH-hh
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERF--YDPLKGDVKIDDRDIRSYHLRSL-RR 1078 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~--ydp~~G~I~IdG~dI~~i~l~~L-R~ 1078 (1133)
|+++||+|+|++ .++|+|+||+|++||.+||+||||||||||+++|.|+ ++|++|+|.+||.|+.+.+.... |.
T Consensus 4 l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (250)
T 2d2e_A 4 LEIRDLWASIDG---ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARK 80 (250)
T ss_dssp EEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHT
T ss_pred EEEEeEEEEECC---EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhC
Confidence 899999999953 4699999999999999999999999999999999999 89999999999999998887765 45
Q ss_pred cccccccccccccc-cHHHHhccCCC---C-CCC----HHHHHHHHHHcch-HHHHhhcc
Q 041277 1079 HIALVSQEPTLFAG-TIRENIAYGAS---D-EID----ESEIVEAAKAANA-HDFIAGLN 1128 (1133)
Q Consensus 1079 ~isiV~Qdp~LF~g-TIreNI~~g~~---~-~~s----deei~~Al~~a~l-~dfI~~LP 1128 (1133)
.+++|||+|.+|.+ |++||+.++.. . ... ++++.++++..++ .++..+.|
T Consensus 81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~ 140 (250)
T 2d2e_A 81 GLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYL 140 (250)
T ss_dssp TBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBT
T ss_pred cEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCc
Confidence 69999999999986 99999976421 0 111 3467788888888 45555433
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=3.7e-21 Score=218.27 Aligned_cols=128 Identities=27% Similarity=0.416 Sum_probs=108.3
Q ss_pred cEEEEeEEEECCCCCCCc--cccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCC---hhH
Q 041277 1001 NIELQNVHFAYPARPDVM--IFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYH---LRS 1075 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~--vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~---l~~ 1075 (1133)
.|+++||+++|++ .+ +|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+.+ ...
T Consensus 3 ~l~i~~l~~~y~~---~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~ 79 (353)
T 1oxx_K 3 RIIVKNVSKVFKK---GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPP 79 (353)
T ss_dssp CEEEEEEEEEEGG---GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCG
T ss_pred EEEEEeEEEEECC---EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCCh
Confidence 3899999999952 35 899999999999999999999999999999999999999999999999997621 334
Q ss_pred Hhhcccccccccccccc-cHHHHhccCCCC-CCC----HHHHHHHHHHcchHHHHhhccccc
Q 041277 1076 LRRHIALVSQEPTLFAG-TIRENIAYGASD-EID----ESEIVEAAKAANAHDFIAGLNEGY 1131 (1133)
Q Consensus 1076 LR~~isiV~Qdp~LF~g-TIreNI~~g~~~-~~s----deei~~Al~~a~l~dfI~~LP~G~ 1131 (1133)
.|++|++|||++.||.. |++|||.|+... ..+ ++++.++++..++.++..+.|..|
T Consensus 80 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~L 141 (353)
T 1oxx_K 80 EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPREL 141 (353)
T ss_dssp GGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGS
T ss_pred hhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhC
Confidence 57899999999999976 999999987421 112 356889999999998877766543
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2e-20 Score=206.82 Aligned_cols=113 Identities=27% Similarity=0.443 Sum_probs=90.0
Q ss_pred cccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhh
Q 041277 999 TGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRR 1078 (1133)
Q Consensus 999 ~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~ 1078 (1133)
.+.|+++||+|+| + ++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||
T Consensus 38 ~~~l~~~~l~~~~--~---~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g------------- 99 (290)
T 2bbs_A 38 DDSLSFSNFSLLG--T---PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99 (290)
T ss_dssp ------------C--C---CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------
T ss_pred CceEEEEEEEEcC--c---eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------
Confidence 4579999999965 2 489999999999999999999999999999999999999999999998
Q ss_pred cccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccC
Q 041277 1079 HIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYD 1132 (1133)
Q Consensus 1079 ~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~d 1132 (1133)
+|+||||+|.+|.+|++|||. +.. ..+..+.++++.+++.+++..+|++++
T Consensus 100 ~i~~v~Q~~~l~~~tv~enl~-~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~ 150 (290)
T 2bbs_A 100 RISFCSQNSWIMPGTIKENII-GVS--YDEYRYRSVIKACQLEEDISKFAEKDN 150 (290)
T ss_dssp CEEEECSSCCCCSSBHHHHHH-TTC--CCHHHHHHHHHHTTCHHHHHTSTTGGG
T ss_pred EEEEEeCCCccCcccHHHHhh-Ccc--cchHHHHHHHHHhChHHHHHhcccccc
Confidence 499999999999999999998 532 345566778888999999999987764
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-20 Score=215.45 Aligned_cols=126 Identities=23% Similarity=0.411 Sum_probs=106.5
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCC------CChh
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRS------YHLR 1074 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~------i~l~ 1074 (1133)
.|+++||+++|+ +.++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+ ++..
T Consensus 3 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~ 79 (372)
T 1g29_1 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (372)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred EEEEEeEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHh
Confidence 389999999995 2458999999999999999999999999999999999999999999999999976 5543
Q ss_pred HHhhccccccccccccc-ccHHHHhccCCC-CCCC----HHHHHHHHHHcchHHHHhhccccc
Q 041277 1075 SLRRHIALVSQEPTLFA-GTIRENIAYGAS-DEID----ESEIVEAAKAANAHDFIAGLNEGY 1131 (1133)
Q Consensus 1075 ~LR~~isiV~Qdp~LF~-gTIreNI~~g~~-~~~s----deei~~Al~~a~l~dfI~~LP~G~ 1131 (1133)
|++|++|||++.||. -|++|||.|+.. ...+ ++++.++++..++.++..+.|..|
T Consensus 80 --~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~L 140 (372)
T 1g29_1 80 --DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPREL 140 (372)
T ss_dssp --GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGS
T ss_pred --HCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccC
Confidence 688999999999996 599999998621 0112 346888999999988877666543
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.7e-20 Score=203.02 Aligned_cols=122 Identities=19% Similarity=0.354 Sum_probs=103.6
Q ss_pred EEEEeEEEECCCC-CCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcc
Q 041277 1002 IELQNVHFAYPAR-PDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHI 1080 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~-~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~i 1080 (1133)
|+++||+++|+++ ...++|+|+||+|+ ||++||+||||||||||+++|.|++ |++|+|.+||.|+.+. .. |+++
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i 76 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY 76 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence 7899999999531 01469999999999 9999999999999999999999999 9999999999999765 34 8899
Q ss_pred c-ccccccccccccHHHHhccCCC-CCCCHHHHHHHHHHcchH-HHHhhccc
Q 041277 1081 A-LVSQEPTLFAGTIRENIAYGAS-DEIDESEIVEAAKAANAH-DFIAGLNE 1129 (1133)
Q Consensus 1081 s-iV~Qdp~LF~gTIreNI~~g~~-~~~sdeei~~Al~~a~l~-dfI~~LP~ 1129 (1133)
+ +|||+|.+ +.|++||+.++.+ ....++++.++++..+++ +...+.|.
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 127 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLY 127 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGG
T ss_pred EEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChh
Confidence 9 99999999 9999999987531 123577899999999998 76665544
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.79 E-value=5.5e-20 Score=199.89 Aligned_cols=115 Identities=23% Similarity=0.369 Sum_probs=97.1
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcc
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHI 1080 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~i 1080 (1133)
-|+++||+++|+. +.++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|. +|++|
T Consensus 4 ~l~i~~l~~~y~~--~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i 68 (253)
T 2nq2_C 4 ALSVENLGFYYQA--ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSI 68 (253)
T ss_dssp EEEEEEEEEEETT--TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCE
T ss_pred eEEEeeEEEEeCC--CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccE
Confidence 3899999999951 23599999999999999999999999999999999999999999998 46789
Q ss_pred cccccccccc-cccHHHHhccCCC---------CCCCHHHHHHHHHHcchHHHHhhcccc
Q 041277 1081 ALVSQEPTLF-AGTIRENIAYGAS---------DEIDESEIVEAAKAANAHDFIAGLNEG 1130 (1133)
Q Consensus 1081 siV~Qdp~LF-~gTIreNI~~g~~---------~~~sdeei~~Al~~a~l~dfI~~LP~G 1130 (1133)
+||||+|.+| ..|++||+.++.. ....++++.++++..++.++..+.|..
T Consensus 69 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 128 (253)
T 2nq2_C 69 GFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTS 128 (253)
T ss_dssp EEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGG
T ss_pred EEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhh
Confidence 9999999987 6799999998631 111235688999999998877665543
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=9.5e-21 Score=214.91 Aligned_cols=195 Identities=15% Similarity=0.187 Sum_probs=144.5
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCC-------C
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKL-------Q 431 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~-------~ 431 (1133)
..++.+++++.|+. ...+++++ |+|.+||+++|+||||||||||+++|+|+.+|+.|.|.+.|++..+. .
T Consensus 44 ~~i~~~~l~~~~~t--g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~ 120 (347)
T 2obl_A 44 DPLLRQVIDQPFIL--GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLP 120 (347)
T ss_dssp CSTTCCCCCSEECC--SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSC
T ss_pred CCeeecccceecCC--CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhh
Confidence 35788999999973 23589999 99999999999999999999999999999999999999988653211 1
Q ss_pred HHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCccccc-ccCCCCCCChHHHHHHHH
Q 041277 432 LKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQ-VGERGVQMSGGQKQRIAI 510 (1133)
Q Consensus 432 ~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~-~~~~g~~LSgGqkqri~i 510 (1133)
...+++.+.+++|... + ..+++..+.....+.++... .|.+.. +-+...+||+|| ||+++
T Consensus 121 ~~~~~~~v~~~~~~~~----~------------~~~r~~~~~~~~~~ae~~~~--~~~~vl~~ld~~~~lS~g~-r~v~l 181 (347)
T 2obl_A 121 QSTLSKCVLVVTTSDR----P------------ALERMKAAFTATTIAEYFRD--QGKNVLLMMDSVTRYARAA-RDVGL 181 (347)
T ss_dssp HHHHTTEEEEEECTTS----C------------HHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHHHHHHHH-HHHHH
T ss_pred hhhhhceEEEEECCCC----C------------HHHHHHHHHHHHHHHHHHHh--ccccHHHHHhhHHHHHHHH-HHHHH
Confidence 2223444566665321 1 12333333333333343332 122211 113456899999 99999
Q ss_pred HHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh---CCC-----eEEEEecCcchhhcCCEEEEEeCCeEEeecCcc
Q 041277 511 ARAIIKAPRILLLDEATSALDSESERVVQEALDKAV---VGR-----TTIIIAHRLSTIRNADVIAVVQDGQVMETGSHD 582 (1133)
Q Consensus 511 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~---~~~-----t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~ 582 (1133)
| +.+|++ |+++|+.....+.+.+++.. +|. |++++||+++ -.-||+++++.+|+|+.+|+.+
T Consensus 182 a---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l~ 251 (347)
T 2obl_A 182 A---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRELA 251 (347)
T ss_dssp H---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHHH
T ss_pred H---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCHH
Confidence 9 688888 99999999999999998874 366 8999999998 4459999999999999999887
Q ss_pred hhc
Q 041277 583 ELI 585 (1133)
Q Consensus 583 ~l~ 585 (1133)
++.
T Consensus 252 ~~~ 254 (347)
T 2obl_A 252 EEN 254 (347)
T ss_dssp TTT
T ss_pred HcC
Confidence 764
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.4e-21 Score=198.73 Aligned_cols=111 Identities=21% Similarity=0.239 Sum_probs=88.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhccCCC---ccEEEECCeecCCCC---HHHHh-hhce----EEecCCCCccccHHHHHh
Q 041277 390 KTVALVGGSGSGKSTVIALLQRFYAPL---GGEIILDGVSIDKLQ---LKWLR-SQMG----LVSQEPALFATSIKENIL 458 (1133)
Q Consensus 390 ~~~~ivG~sGsGKSTll~~l~~~~~~~---~G~i~~~g~~~~~~~---~~~~r-~~i~----~v~Q~~~l~~~ti~eni~ 458 (1133)
++++|+|+||||||||+++|+|+|+|+ .|.|.+||.++.+++ .+.+| +++| +++|++++| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 689999999999999999999999998 899999999988776 66777 5788 899999887 111
Q ss_pred cCCCCCCHHHHHHHHHHhchHHHHHh-CCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEE
Q 041277 459 FGKEDASMEEVIEAAKASNAHNFIRQ-LPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRIL 521 (1133)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~i~~-l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~il 521 (1133)
+ . ++. .+++++++.. +| |+||.++|+ |||||||||+||||++++|++.
T Consensus 77 -~----~-~~~-----~a~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 77 -V----S-EEE-----GNDLDWIYERYLS-DYDLVITEG---FSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp -C----C-HHH-----HTCHHHHHHHHTT-TCSEEEEES---CGGGCCCEEEECSSGGGGGGGC
T ss_pred -C----C-hhh-----hhCHHHHHHhhCC-CCCEEEECC---cCCCCCcEEEEEecccCCCccC
Confidence 1 1 121 6789999999 99 999999995 9999999999999999999874
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=99.78 E-value=4.7e-20 Score=202.29 Aligned_cols=118 Identities=20% Similarity=0.349 Sum_probs=99.3
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhh--cCCCCCeEEECCcccCCCChhHH-h
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERF--YDPLKGDVKIDDRDIRSYHLRSL-R 1077 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~--ydp~~G~I~IdG~dI~~i~l~~L-R 1077 (1133)
-|+++||+++|+ +.++|+|+||+|++||.+||+||||||||||+++|.|+ ++|++|+|.+||.|+.+.+.... |
T Consensus 20 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 96 (267)
T 2zu0_C 20 MLSIKDLHVSVE---DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG 96 (267)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHH
T ss_pred eEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhh
Confidence 599999999995 34699999999999999999999999999999999999 67999999999999998887766 4
Q ss_pred hcccccccccccccc-cHHHHhccCC--------CCCCC----HHHHHHHHHHcchH
Q 041277 1078 RHIALVSQEPTLFAG-TIRENIAYGA--------SDEID----ESEIVEAAKAANAH 1121 (1133)
Q Consensus 1078 ~~isiV~Qdp~LF~g-TIreNI~~g~--------~~~~s----deei~~Al~~a~l~ 1121 (1133)
+.+++|||+|.+|.+ |++||+.++. ....+ ++++.++++..++.
T Consensus 97 ~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~ 153 (267)
T 2zu0_C 97 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMP 153 (267)
T ss_dssp HTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCC
T ss_pred CCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCC
Confidence 569999999999877 8999986531 00122 24577888888885
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.77 E-value=1e-19 Score=198.78 Aligned_cols=131 Identities=23% Similarity=0.288 Sum_probs=101.1
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCC-ccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHH
Q 041277 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPL-GGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKEN 456 (1133)
Q Consensus 378 ~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~-~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~en 456 (1133)
+|+++| +++|++++|+|||||||||++++|+|+++|+ +|+|.++|.++.... +..+++++|+
T Consensus 16 vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~~~v~q~----------- 78 (261)
T 2eyu_A 16 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKKSIVNQR----------- 78 (261)
T ss_dssp HHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSSSEEEEE-----------
T ss_pred HHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcceeeeHH-----------
Confidence 899999 9999999999999999999999999999998 999999997653221 1122333321
Q ss_pred HhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHH
Q 041277 457 ILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESER 536 (1133)
Q Consensus 457 i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~ 536 (1133)
.+|....+| |++|||||..+|+++++|||| |+++..
T Consensus 79 -----------------------------------~~gl~~~~l------~~~la~aL~~~p~illlDEp~---D~~~~~ 114 (261)
T 2eyu_A 79 -----------------------------------EVGEDTKSF------ADALRAALREDPDVIFVGEMR---DLETVE 114 (261)
T ss_dssp -----------------------------------EBTTTBSCH------HHHHHHHHHHCCSEEEESCCC---SHHHHH
T ss_pred -----------------------------------HhCCCHHHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHH
Confidence 111111123 899999999999999999999 988755
Q ss_pred HHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeC
Q 041277 537 VVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQD 572 (1133)
Q Consensus 537 ~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~ 572 (1133)
.+ ++....|.|+++++|+.+....|||+++|..
T Consensus 115 ~~---l~~~~~g~~vl~t~H~~~~~~~~dri~~l~~ 147 (261)
T 2eyu_A 115 TA---LRAAETGHLVFGTLHTNTAIDTIHRIVDIFP 147 (261)
T ss_dssp HH---HHHHHTTCEEEEEECCSSHHHHHHHHHHTSC
T ss_pred HH---HHHHccCCEEEEEeCcchHHHHHHHHhhhcC
Confidence 43 3334468999999999986666999988754
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.7e-18 Score=209.01 Aligned_cols=77 Identities=18% Similarity=0.288 Sum_probs=71.8
Q ss_pred CCC-ChHHHHHHHHHHHHhhCC--CEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCe
Q 041277 498 VQM-SGGQKQRIAIARAIIKAP--RILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQ 574 (1133)
Q Consensus 498 ~~L-SgGqkqri~iARal~~~~--~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~ 574 (1133)
.+| |||||||++||||++.+| ++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+..||++++|++|.
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~~~~~~ 474 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQV 474 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEEEECCE
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeccc
Confidence 456 999999999999999999 99999999999999999999999998877899999999999888899999997653
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.7e-23 Score=235.84 Aligned_cols=201 Identities=11% Similarity=0.004 Sum_probs=134.6
Q ss_pred HHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCC-CCCccc
Q 041277 924 FWYGGRLIAD-GYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRYTKIEPEDPEGHQP-ERITGN 1001 (1133)
Q Consensus 924 ~~~g~~l~~~-g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~-~~~~g~ 1001 (1133)
.++|++.... +.++.+.+..++.++.....+ .+....+.+..+..+.+|+..++ +|..+. ....... ....+.
T Consensus 52 ~~~G~~~~~~~~~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~l~~~~Ri~~vl--~p~~~~-~~~~~~ir~~~~~~ 126 (361)
T 2gza_A 52 ERASAWEYYAVPNLDYEHLISLGTATARFVDQ--DISDSRPVLSAILPMGERIQIVR--PPACEH-GTISVTIRKPSFTR 126 (361)
T ss_dssp EETTEEEEEECTTCCHHHHHHHHHHHHHHTTC--CCSSSSCEEEEECTTSCEEEEEC--TTTBCT-TCCEEEEECCCCCC
T ss_pred EECCeEEEeCCCCCCHHHHHHHHHHHHHHcCC--ccCCCCCeEEEEcCCCcEEEEEe--cCccCC-CCeEEEEEecCCCC
Confidence 4456555555 789999988887776544333 12222222222333445665554 221111 0000000 011244
Q ss_pred E---------EEEeEEEE---CCCCCCCccc---------cCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCe
Q 041277 1002 I---------ELQNVHFA---YPARPDVMIF---------EGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGD 1060 (1133)
Q Consensus 1002 I---------~f~nVsF~---Y~~~~~~~vL---------~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~ 1060 (1133)
+ +|+||+|+ |++. +.++| +++||+|++|+.++|||||||||||++++|.|+|+|++|.
T Consensus 127 itl~~l~~~g~f~~v~f~~~~Y~~~-~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~ 205 (361)
T 2gza_A 127 RTLEDYAQQGFFKHVRPMSKSLTPF-EQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRL 205 (361)
T ss_dssp CCHHHHHHTTTTSCCCCSCSCCCHH-HHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCE
T ss_pred CCHHHHHhcCCcCccccccccccch-hHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceE
Confidence 5 99999999 9631 23456 9999999999999999999999999999999999999999
Q ss_pred EEECCcccCCCChhHHhhcccccc-ccccc---ccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1061 VKIDDRDIRSYHLRSLRRHIALVS-QEPTL---FAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1061 I~IdG~dI~~i~l~~LR~~isiV~-Qdp~L---F~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
|+|+|. +++.+..+|+++++|+ |++.+ +..|+++||+++... .+|..+..+++.+.++++++.+|.|++|
T Consensus 206 I~ie~~--~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~-~pd~~l~~e~r~~~~~~~l~~l~~g~~~ 279 (361)
T 2gza_A 206 ITIEDV--PELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRM-KPTRILLAELRGGEAYDFINVAASGHGG 279 (361)
T ss_dssp EEEESS--SCCCCTTCSSEEEEECC----------CCHHHHHHHHTTS-CCSEEEESCCCSTHHHHHHHHHHTTCCS
T ss_pred EEECCc--cccCccccCCEEEEeecCccccccccccCHHHHHHHHHhc-CCCEEEEcCchHHHHHHHHHHHhcCCCe
Confidence 999985 5677777899999999 99987 899999999987542 3444555666778889999999999875
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.5e-20 Score=227.36 Aligned_cols=169 Identities=14% Similarity=0.146 Sum_probs=121.5
Q ss_pred CccccceeE-EeeCCCEEEEEcCCCCcHHHHHHH--HHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCcccc
Q 041277 376 SIIFKDFCL-TIPAGKTVALVGGSGSGKSTVIAL--LQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATS 452 (1133)
Q Consensus 376 ~~~l~~i~l-~i~~g~~~~ivG~sGsGKSTll~~--l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~t 452 (1133)
.++|+++|| .+++|++++|+||||||||||+++ +.|+++|.+|.|+++|.+. ..+....++++||++|++...
T Consensus 25 ~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~-~~~~~~~~~~~g~~~q~~~~~--- 100 (525)
T 1tf7_A 25 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-PQDIIKNARSFGWDLAKLVDE--- 100 (525)
T ss_dssp CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHGGGTCCHHHHHHT---
T ss_pred chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcCCChHHhhcc---
Confidence 358999999 999999999999999999999999 6899999999999999873 222334567899999987521
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccC---
Q 041277 453 IKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSA--- 529 (1133)
Q Consensus 453 i~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~--- 529 (1133)
+|+.+...... ++..++++..++.+...+.+ ..|||| +|++++|||||+.
T Consensus 101 --~~l~~~~~~~~-~~~~~~l~~~~l~~~~~~~~-----------~~LS~g-------------~~~~lilDe~t~~~~~ 153 (525)
T 1tf7_A 101 --GKLFILDASPD-PEGQEVVGGFDLSALIERIN-----------YAIQKY-------------RARRVSIDSVTSVFQQ 153 (525)
T ss_dssp --TSEEEEECCCC-SSCCSCCSSHHHHHHHHHHH-----------HHHHHH-------------TCSEEEEECSTTTSTT
T ss_pred --CcEEEEecCcc-cchhhhhcccCHHHHHHHHH-----------HHHHHc-------------CCCEEEECCHHHHHHh
Confidence 11211100000 00011122223333333333 245665 4779999999984
Q ss_pred --CChHHHHHHHHHHHHHh-CCCeEEEEecCcchh---------hc-CCEEEEEeCCeE
Q 041277 530 --LDSESERVVQEALDKAV-VGRTTIIIAHRLSTI---------RN-ADVIAVVQDGQV 575 (1133)
Q Consensus 530 --lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~---------~~-~d~i~~l~~G~i 575 (1133)
+|+..++.+.+.++.+. .|+|+|+++|+++.+ .. ||+|++|++|++
T Consensus 154 ~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~~~ 212 (525)
T 1tf7_A 154 YDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVLE 212 (525)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEECS
T ss_pred cCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEEcc
Confidence 58899999999988764 589999999999874 45 999999999653
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1e-18 Score=196.09 Aligned_cols=180 Identities=14% Similarity=0.123 Sum_probs=120.7
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCcc-EEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHH
Q 041277 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGG-EIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKEN 456 (1133)
Q Consensus 378 ~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G-~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~en 456 (1133)
+|+++++.+++|++++|+||||||||||++.|+|...|.+| .|.+.+.+ .+...+++++..+.|+..+ +..++
T Consensus 24 ~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~~~---~~~~~ 97 (296)
T 1cr0_A 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRVRL---RQSDS 97 (296)
T ss_dssp THHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTCCG---GGCHH
T ss_pred HHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCCCh---hhccc
Confidence 79999999999999999999999999999999999999888 77654433 3455666666555554432 22234
Q ss_pred HhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHH-HHHHHHHHHHhhCCCEEEEeCccc---C---
Q 041277 457 ILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQ-KQRIAIARAIIKAPRILLLDEATS---A--- 529 (1133)
Q Consensus 457 i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq-kqri~iARal~~~~~illlDE~ts---~--- 529 (1133)
+..+. .+.++..+++ .+.+...+-. +.+...++|.+| +||+. |+|+..+|+++|+||||+ +
T Consensus 98 l~~~~--~~~~~~~~~~-----~~~l~~~~l~----i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~ 165 (296)
T 1cr0_A 98 LKREI--IENGKFDQWF-----DELFGNDTFH----LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGE 165 (296)
T ss_dssp HHHHH--HHHTHHHHHH-----HHHHSSSCEE----EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC--------
T ss_pred cccCC--CCHHHHHHHH-----HHHhccCCEE----EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCC
Confidence 43221 1111222211 1122222211 223334689999 77777 999999999999999999 4
Q ss_pred CCh-HHHHHHHHHHHHHh--CCCeEEEEecCc--c--------------------hhhc-CCEEEEEeCCeE
Q 041277 530 LDS-ESERVVQEALDKAV--VGRTTIIIAHRL--S--------------------TIRN-ADVIAVVQDGQV 575 (1133)
Q Consensus 530 lD~-~~~~~i~~~l~~~~--~~~t~i~itH~~--~--------------------~~~~-~d~i~~l~~G~i 575 (1133)
+|. .....+.+.|+++. .|.|+|+++|.. + .+.. ||+|++|++|+.
T Consensus 166 ~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 166 SDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ---CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 454 45567888887764 389999999995 4 5554 999999999875
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-20 Score=195.56 Aligned_cols=159 Identities=17% Similarity=0.230 Sum_probs=117.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHH
Q 041277 389 GKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEE 468 (1133)
Q Consensus 389 g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~ 468 (1133)
|++++|+||||||||||+++|+|+++ ++| |.++|.+..+++ .+++++||++|+. .++ ++|+..- ....
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~--~~~~~ig~~~~~~---~g~-~~~l~~~--~~~~-- 68 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR--QGGRRIGFDVVTL---SGT-RGPLSRV--GLEP-- 68 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE--TTSSEEEEEEEET---TSC-EEEEEEC--CCCC--
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH--hhhceEEEEEEec---ccc-eehhhcc--cccC--
Confidence 78999999999999999999999999 999 999998886543 4678899999986 232 1222110 0000
Q ss_pred HHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHH-HHHH---HHhhCCCEEEEeC--cccCCChHHHHHHHHHH
Q 041277 469 VIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRI-AIAR---AIIKAPRILLLDE--ATSALDSESERVVQEAL 542 (1133)
Q Consensus 469 ~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri-~iAR---al~~~~~illlDE--~ts~lD~~~~~~i~~~l 542 (1133)
-+...+..+|+.+..+|||||+++ +++| |+..+|+++|+|| |+..+|....+.+.+.+
T Consensus 69 ----------------~~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l 132 (189)
T 2i3b_A 69 ----------------PPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTL 132 (189)
T ss_dssp ----------------CSSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHH
T ss_pred ----------------CccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHH
Confidence 001123478888899999999998 5566 7899999999999 89889998777776666
Q ss_pred HHHhCCCeEEE--Ee--cCcchhhcCCEEEEEeCCeEEeec
Q 041277 543 DKAVVGRTTII--IA--HRLSTIRNADVIAVVQDGQVMETG 579 (1133)
Q Consensus 543 ~~~~~~~t~i~--it--H~~~~~~~~d~i~~l~~G~i~~~g 579 (1133)
+. .+|+|+ ++ ||.+ ...+|+|..+++|+|++-.
T Consensus 133 ~~---~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 133 ST---PGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp HC---SSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEECC
T ss_pred hC---CCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEeC
Confidence 53 445554 34 9875 4457888888899998743
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-17 Score=190.63 Aligned_cols=76 Identities=24% Similarity=0.340 Sum_probs=67.7
Q ss_pred CCCCCChHHHH------HHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhcCCEEE
Q 041277 496 RGVQMSGGQKQ------RIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRNADVIA 568 (1133)
Q Consensus 496 ~g~~LSgGqkq------ri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~ 568 (1133)
....||||||| |+++|||++.+|++|||||||++||+.....+.+.|+++. +++|+|+|||+.+....||+++
T Consensus 245 ~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~~ 324 (339)
T 3qkt_A 245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVI 324 (339)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEE
T ss_pred ChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEEE
Confidence 34679999999 6788889999999999999999999999999999998864 5789999999987666799999
Q ss_pred EEe
Q 041277 569 VVQ 571 (1133)
Q Consensus 569 ~l~ 571 (1133)
+|+
T Consensus 325 ~l~ 327 (339)
T 3qkt_A 325 RIS 327 (339)
T ss_dssp EEE
T ss_pred EEE
Confidence 985
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.6e-21 Score=221.37 Aligned_cols=174 Identities=21% Similarity=0.252 Sum_probs=141.6
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCC-ccEEEECCeecCCCCHHHHhhhceEEec-----CCCCccc
Q 041277 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPL-GGEIILDGVSIDKLQLKWLRSQMGLVSQ-----EPALFAT 451 (1133)
Q Consensus 378 ~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~-~G~i~~~g~~~~~~~~~~~r~~i~~v~Q-----~~~l~~~ 451 (1133)
+|++++ +++|++++|+|||||||||++++|+|+++|+ +|+|.+.|.++. + .+++.+++|+| ++..|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~~ 200 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFAD 200 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSHH
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHHH
Confidence 566665 7899999999999999999999999999998 899987776653 2 35678999999 8889999
Q ss_pred cHHHHHhcCCCCC-------CHHHHHHHHHHhch-----------------HHHH------------HhCCCcccccccC
Q 041277 452 SIKENILFGKEDA-------SMEEVIEAAKASNA-----------------HNFI------------RQLPQQYDTQVGE 495 (1133)
Q Consensus 452 ti~eni~~~~~~~-------~~~~~~~~~~~~~~-----------------~~~i------------~~l~~g~~t~~~~ 495 (1133)
++++|++.. |+. +.+.+..+++.++. +..+ ..+++++++.|++
T Consensus 201 ~l~~~L~~~-pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~q 279 (372)
T 2ewv_A 201 ALRAALRED-PDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIISQ 279 (372)
T ss_dssp HHHHHTTSC-CSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEEE
T ss_pred HHHHHhhhC-cCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEEE
Confidence 999999974 443 56666666665542 1111 1246688999999
Q ss_pred CCCCCChHHHHHHHHHHHHhhCCCE--EEEeCcccCCChH----H-----HHHHHHHHHHHhCCCeEEEEecCcch
Q 041277 496 RGVQMSGGQKQRIAIARAIIKAPRI--LLLDEATSALDSE----S-----ERVVQEALDKAVVGRTTIIIAHRLST 560 (1133)
Q Consensus 496 ~g~~LSgGqkqri~iARal~~~~~i--lllDE~ts~lD~~----~-----~~~i~~~l~~~~~~~t~i~itH~~~~ 560 (1133)
++..+||| ||+++||+++.+|+| +|+||+|++||.. + +...+++++...+|+|.+.++||++.
T Consensus 280 rl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~~ 353 (372)
T 2ewv_A 280 RLLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEASP 353 (372)
T ss_dssp EEEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSCS
T ss_pred EeEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHcC
Confidence 99999999 899999999999999 9999999999965 2 34577788778889999999999874
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.74 E-value=3.2e-18 Score=218.60 Aligned_cols=172 Identities=17% Similarity=0.171 Sum_probs=122.8
Q ss_pred ccEEEEE-----EEEEcCCCCCCccccceeEEeeC-------CCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCee
Q 041277 359 GEVEFKC-----VQFAYPSRPESIIFKDFCLTIPA-------GKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVS 426 (1133)
Q Consensus 359 ~~i~~~~-----v~~~y~~~~~~~~l~~i~l~i~~-------g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~ 426 (1133)
+.|+++| |++.|++ +..+++|++|++++ |++++|+|||||||||+++.+ |+..+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~--~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~----------- 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFG--DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV----------- 814 (1022)
T ss_dssp CCEEEEEECCCC------C--CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-----------
T ss_pred ceEEEEeccccEEEEEecC--CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-----------
Confidence 4599999 9999943 23599999999987 999999999999999999999 98863
Q ss_pred cCCCCHHHHhhhce-EEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHH
Q 041277 427 IDKLQLKWLRSQMG-LVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQK 505 (1133)
Q Consensus 427 ~~~~~~~~~r~~i~-~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 505 (1133)
..++| ||||++. ..|+.|||... .++.+.+.. | ..++|++++
T Consensus 815 ---------~aqiG~~Vpq~~~--~l~v~d~I~~r---------------ig~~d~~~~---~--------~stf~~em~ 857 (1022)
T 2o8b_B 815 ---------MAQMGCYVPAEVC--RLTPIDRVFTR---------------LGASDRIMS---G--------ESTFFVELS 857 (1022)
T ss_dssp ---------HHTTTCCEESSEE--EECCCSBEEEE---------------CC--------------------CHHHHHHH
T ss_pred ---------HhheeEEeccCcC--CCCHHHHHHHH---------------cCCHHHHhh---c--------hhhhHHHHH
Confidence 34677 9999873 55777776421 111121111 1 135777776
Q ss_pred HHHHHHHHHhhCCCEEEEeCcccCCChHH-HHHHHHHHHHHh-C-CCeEEEEecCcchhhc-CCEEEEEeCCeEE--eec
Q 041277 506 QRIAIARAIIKAPRILLLDEATSALDSES-ERVVQEALDKAV-V-GRTTIIIAHRLSTIRN-ADVIAVVQDGQVM--ETG 579 (1133)
Q Consensus 506 qri~iARal~~~~~illlDE~ts~lD~~~-~~~i~~~l~~~~-~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~--~~g 579 (1133)
+ +++||+++.+|+++|||||++++|+.. ...+++.++.+. + |+|+|++||+++.+.. ||++.++ +|++. +.|
T Consensus 858 ~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~~ 935 (1022)
T 2o8b_B 858 E-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVEN 935 (1022)
T ss_dssp H-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC---
T ss_pred H-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEec
Confidence 5 999999999999999999999999986 455777777764 3 8999999999998875 8998886 58887 455
Q ss_pred Ccch
Q 041277 580 SHDE 583 (1133)
Q Consensus 580 ~~~~ 583 (1133)
++++
T Consensus 936 ~~~~ 939 (1022)
T 2o8b_B 936 ECED 939 (1022)
T ss_dssp ----
T ss_pred Cccc
Confidence 5433
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-17 Score=201.79 Aligned_cols=152 Identities=18% Similarity=0.126 Sum_probs=116.3
Q ss_pred eEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHh-cCC
Q 041277 383 CLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENIL-FGK 461 (1133)
Q Consensus 383 ~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~-~~~ 461 (1133)
+..+++|++++|+||||||||||++.++|...|. |+ +.+.+++|++. .+++++.. +|.
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-----------------~vi~~~~ee~~---~~l~~~~~~~g~ 333 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-----------------RAILFAYEESR---AQLLRNAYSWGM 333 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-----------------CEEEEESSSCH---HHHHHHHHTTSC
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-----------------CEEEEEEeCCH---HHHHHHHHHcCC
Confidence 4489999999999999999999999999998885 53 01456667652 24555542 221
Q ss_pred CCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChH-----HHH
Q 041277 462 EDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSE-----SER 536 (1133)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~-----~~~ 536 (1133)
+.++ +.. .|..........+|||||+||+++||++..+|+++|+| ||++||.. .++
T Consensus 334 ---~~~~------------~~~---~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~ 394 (525)
T 1tf7_A 334 ---DFEE------------MER---QNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQ 394 (525)
T ss_dssp ---CHHH------------HHH---TTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHH
T ss_pred ---CHHH------------HHh---CCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHH
Confidence 2111 111 12222333445689999999999999999999999999 99999999 888
Q ss_pred HHHHHHHHHh-CCCeEEEEecCc----------chhhc-CCEEEEEeCCe
Q 041277 537 VVQEALDKAV-VGRTTIIIAHRL----------STIRN-ADVIAVVQDGQ 574 (1133)
Q Consensus 537 ~i~~~l~~~~-~~~t~i~itH~~----------~~~~~-~d~i~~l~~G~ 574 (1133)
.+.+.++.+. .|.|+|+++|+. ..+.. ||+|++|++|+
T Consensus 395 ~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 395 FVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 8888887764 589999999998 66665 99999999987
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-20 Score=197.50 Aligned_cols=158 Identities=18% Similarity=0.232 Sum_probs=121.3
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHHhccC-------------CCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccH
Q 041277 387 PAGKTVALVGGSGSGKSTVIALLQRFYA-------------PLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSI 453 (1133)
Q Consensus 387 ~~g~~~~ivG~sGsGKSTll~~l~~~~~-------------~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti 453 (1133)
++|++++|+||||||||||+++|+|+++ |..|+ ++|.++...+...+++.+ +|+++++++++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~~ 76 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAEF 76 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeeee
Confidence 5899999999999999999999999986 78897 589988888888888876 69999999999
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHH-HHhhCCCEEEEeCcccCCCh
Q 041277 454 KENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIAR-AIIKAPRILLLDEATSALDS 532 (1133)
Q Consensus 454 ~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iAR-al~~~~~illlDE~ts~lD~ 532 (1133)
.+|+ +|. +.+++.++++.....- .+-.|+|+++.... ++ .|| +++.+|++++|||+|+++|.
T Consensus 77 ~~n~-~g~---~~~~i~~~~~~~~~~~-~~~~~~g~~~~~~~-----------~~-~~~~~~l~~p~~~ilde~~~~~d~ 139 (198)
T 1lvg_A 77 SGNL-YGT---SKEAVRAVQAMNRICV-LDVDLQGVRSIKKT-----------DL-CPIYIFVQPPSLDVLEQRLRLRNT 139 (198)
T ss_dssp TTEE-EEE---EHHHHHHHHHTTCEEE-EECCHHHHHHHTTS-----------SC-CCEEEEEECSCHHHHHHHHHHHTC
T ss_pred cCcc-CCC---CHHHHHHHHHcCCcEE-EECCHHHHHHHHhc-----------CC-CcEEEEEeCCCHHHHHHHHHhcCC
Confidence 9998 664 4677777776532111 11234555554321 12 567 88999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeC
Q 041277 533 ESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQD 572 (1133)
Q Consensus 533 ~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~ 572 (1133)
++++.|++.|....++ +.++| +. ..+|+|+++++
T Consensus 140 ~~e~~i~~~l~~~~~~---~~~a~--~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 140 ETEESLAKRLAAARTD---MESSK--EP-GLFDLVIINDD 173 (198)
T ss_dssp SCHHHHHHHHHHHHHH---TTGGG--ST-TTCSEEEECSS
T ss_pred CCHHHHHHHHHHHHHH---HHHhh--cc-CCceEEEECCC
Confidence 9999999998876544 34567 34 67999988875
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.69 E-value=5e-17 Score=160.69 Aligned_cols=80 Identities=23% Similarity=0.345 Sum_probs=70.9
Q ss_pred CCCCCCChHHHHHHHHH------HHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhcCCEE
Q 041277 495 ERGVQMSGGQKQRIAIA------RAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRNADVI 567 (1133)
Q Consensus 495 ~~g~~LSgGqkqri~iA------Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i 567 (1133)
....+||||||||++|| ||++.+|+++||||||++||+.+.+.+.+.+.++. +|+|+|++||+......||++
T Consensus 53 ~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~d~i 132 (148)
T 1f2t_B 53 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHV 132 (148)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEE
T ss_pred CChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHHhCCEE
Confidence 45678999999999876 99999999999999999999999999999999874 589999999999655669999
Q ss_pred EEE--eCCe
Q 041277 568 AVV--QDGQ 574 (1133)
Q Consensus 568 ~~l--~~G~ 574 (1133)
++| ++|.
T Consensus 133 i~l~~~~g~ 141 (148)
T 1f2t_B 133 IRISLENGS 141 (148)
T ss_dssp EEEEEETTE
T ss_pred EEEEcCCCe
Confidence 999 4554
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.69 E-value=6.2e-17 Score=191.06 Aligned_cols=73 Identities=22% Similarity=0.308 Sum_probs=67.3
Q ss_pred CCChHHHHHHHHHHHHh----hCCCEEEEeCcccCCChHHHHHHHHHHHHHhC-CCeEEEEecCcchhhcCCEEEEEe
Q 041277 499 QMSGGQKQRIAIARAII----KAPRILLLDEATSALDSESERVVQEALDKAVV-GRTTIIIAHRLSTIRNADVIAVVQ 571 (1133)
Q Consensus 499 ~LSgGqkqri~iARal~----~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~~d~i~~l~ 571 (1133)
.||||||||++|||+++ .+|+++||||||++||+.....+.+.|++..+ +.++|++||+...+..||+++++.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVY 410 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 49999999999999999 58999999999999999999999999988753 789999999988878899999986
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.69 E-value=8.6e-21 Score=217.71 Aligned_cols=223 Identities=13% Similarity=0.070 Sum_probs=149.1
Q ss_pred HHHHHHHHHHh-cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccccc-ccccc
Q 041277 282 LCYYGSRMVMY-HGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEIL-ENVLG 359 (1133)
Q Consensus 282 ~~~~g~~~v~~-~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~-~~~~~ 359 (1133)
+.+.|++.+.. +.+|.+.+.+++.++.....+ .+....+.+..+..+.+|+++++ +|....... .... ....+
T Consensus 51 v~~~G~~~~~~~~~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~l~~~~Ri~~vl--~p~~~~~~~-~~~ir~~~~~ 125 (361)
T 2gza_A 51 CERASAWEYYAVPNLDYEHLISLGTATARFVDQ--DISDSRPVLSAILPMGERIQIVR--PPACEHGTI-SVTIRKPSFT 125 (361)
T ss_dssp EEETTEEEEEECTTCCHHHHHHHHHHHHHHTTC--CCSSSSCEEEEECTTSCEEEEEC--TTTBCTTCC-EEEEECCCCC
T ss_pred EEECCeEEEeCCCCCCHHHHHHHHHHHHHHcCC--ccCCCCCeEEEEcCCCcEEEEEe--cCccCCCCe-EEEEEecCCC
Confidence 34456655555 789999988887766554332 11112222333344567888877 332211100 0000 01123
Q ss_pred cE---------EEEEEEEE---cCCCCCCccc---------cceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCcc
Q 041277 360 EV---------EFKCVQFA---YPSRPESIIF---------KDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGG 418 (1133)
Q Consensus 360 ~i---------~~~~v~~~---y~~~~~~~~l---------~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G 418 (1133)
.+ +|+||+|+ |+.. +.++| +++||++++|+.++|+||||||||||+++|+|+++|++|
T Consensus 126 ~itl~~l~~~g~f~~v~f~~~~Y~~~-~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g 204 (361)
T 2gza_A 126 RRTLEDYAQQGFFKHVRPMSKSLTPF-EQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQR 204 (361)
T ss_dssp CCCHHHHHHTTTTSCCCCSCSCCCHH-HHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSC
T ss_pred CCCHHHHHhcCCcCccccccccccch-hHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCce
Confidence 34 88999999 8632 23455 999999999999999999999999999999999999999
Q ss_pred EEEECCeecCCCCHHHHhhhceEEe-cCCCC---ccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCccccccc
Q 041277 419 EIILDGVSIDKLQLKWLRSQMGLVS-QEPAL---FATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVG 494 (1133)
Q Consensus 419 ~i~~~g~~~~~~~~~~~r~~i~~v~-Q~~~l---~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~ 494 (1133)
.|.++|. .++.....++.+++++ |++.+ +..|+++||.++.....+..+...++.+++.++++.+|.|++|.++
T Consensus 205 ~I~ie~~--~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~~~~~~~l~~l~~g~~~~l~ 282 (361)
T 2gza_A 205 LITIEDV--PELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTRILLAELRGGEAYDFINVAASGHGGSIT 282 (361)
T ss_dssp EEEEESS--SCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSCCSEEEESCCCSTHHHHHHHHHHTTCCSCEE
T ss_pred EEEECCc--cccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCEEEEcCchHHHHHHHHHHHhcCCCeEEE
Confidence 9999985 3444445677899999 88876 6779999999875433332223333445567889999999999999
Q ss_pred CCCCCCChHHHHHHHHHH
Q 041277 495 ERGVQMSGGQKQRIAIAR 512 (1133)
Q Consensus 495 ~~g~~LSgGqkqri~iAR 512 (1133)
+-+.+-..+..+|+....
T Consensus 283 t~H~~~~~~~~~Rl~~l~ 300 (361)
T 2gza_A 283 SCHAGSCELTFERLALMV 300 (361)
T ss_dssp EEECSSHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHHHH
Confidence 887777888999998765
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-16 Score=201.02 Aligned_cols=168 Identities=15% Similarity=0.136 Sum_probs=118.6
Q ss_pred ccEEEEEEEEEcCCC--CCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHH--------HhccCCCccEEEECCeecC
Q 041277 359 GEVEFKCVQFAYPSR--PESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALL--------QRFYAPLGGEIILDGVSID 428 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~--~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l--------~~~~~~~~G~i~~~g~~~~ 428 (1133)
+.+++++...-+-.. ....+++|++|++++|++++|+|||||||||+++++ .|.+-|.++..
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-------- 701 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-------- 701 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE--------
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc--------
Confidence 457787764333111 134689999999999999999999999999999999 44444433211
Q ss_pred CCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHH
Q 041277 429 KLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRI 508 (1133)
Q Consensus 429 ~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 508 (1133)
++.+. .+|. ..++.+.+ ...+|+|++++.
T Consensus 702 ----------~~~~d---~i~~------------------------~ig~~d~l--------------~~~lStf~~e~~ 730 (934)
T 3thx_A 702 ----------VSIVD---CILA------------------------RVGAGDSQ--------------LKGVSTFMAEML 730 (934)
T ss_dssp ----------EECCS---EEEE------------------------ECC-----------------------CHHHHHHH
T ss_pred ----------chHHH---HHHH------------------------hcCchhhH--------------HHhHhhhHHHHH
Confidence 11000 0000 01111111 125788888888
Q ss_pred HHHHHH--hhCCCEEEEeCcccCCChHHHHHH-HHHHHHHh--CCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcch
Q 041277 509 AIARAI--IKAPRILLLDEATSALDSESERVV-QEALDKAV--VGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDE 583 (1133)
Q Consensus 509 ~iARal--~~~~~illlDE~ts~lD~~~~~~i-~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~ 583 (1133)
.+|+++ +.+|+++||||||+|+|+.....+ ...++.+. .|+|+|++||+.+....||++..+++|++...++.++
T Consensus 731 ~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~ 810 (934)
T 3thx_A 731 ETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEET 810 (934)
T ss_dssp HHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTE
T ss_pred HHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCc
Confidence 888888 899999999999999999887766 55555554 3899999999988777899999999999999888777
Q ss_pred hc
Q 041277 584 LI 585 (1133)
Q Consensus 584 l~ 585 (1133)
+.
T Consensus 811 l~ 812 (934)
T 3thx_A 811 LT 812 (934)
T ss_dssp EE
T ss_pred EE
Confidence 64
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.68 E-value=5.4e-18 Score=193.36 Aligned_cols=166 Identities=16% Similarity=0.151 Sum_probs=118.8
Q ss_pred cccce-eEEeeCCCEEEEEcCCCCcHHHHHHHHHhcc--CCCc----cE-EEECCeecCCCCHHHHhhhceEEecCCCCc
Q 041277 378 IFKDF-CLTIPAGKTVALVGGSGSGKSTVIALLQRFY--APLG----GE-IILDGVSIDKLQLKWLRSQMGLVSQEPALF 449 (1133)
Q Consensus 378 ~l~~i-~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~--~~~~----G~-i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~ 449 (1133)
.|+++ ++.+++|++++|+||||||||||++.+++.+ +|++ |+ |++++.+.. .++++++++|++.++
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~~i~~i~q~~~~~ 192 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPERIREIAQNRGLD 192 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHHHHHHHHHTTTCC
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHHHHHHHHHHcCCC
Confidence 56665 6899999999999999999999999999998 6766 68 899987642 246788999999888
Q ss_pred cccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHh-------hCCCEEE
Q 041277 450 ATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAII-------KAPRILL 522 (1133)
Q Consensus 450 ~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~-------~~~~ill 522 (1133)
..++.+||.+.... . |++|+|++.++++++ .+|+++|
T Consensus 193 ~~~v~~ni~~~~~~-~-----------------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~llI 236 (349)
T 1pzn_A 193 PDEVLKHIYVARAF-N-----------------------------------SNHQMLLVQQAEDKIKELLNTDRPVKLLI 236 (349)
T ss_dssp HHHHGGGEEEEECC-S-----------------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEEEE
T ss_pred HHHHhhCEEEEecC-C-----------------------------------hHHHHHHHHHHHHHHHHhccccCCCCEEE
Confidence 88999998875421 1 345666666666666 6899999
Q ss_pred EeCcccCCChHH------------HHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhc
Q 041277 523 LDEATSALDSES------------ERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELI 585 (1133)
Q Consensus 523 lDE~ts~lD~~~------------~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 585 (1133)
+||||+.+|++. ...+...|.++. .+.|+|+++|....... ++.+.+...|++++.+.+..|.
T Consensus 237 lDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~~~rL~ 314 (349)
T 1pzn_A 237 VDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVY 314 (349)
T ss_dssp EETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTCSEEEE
T ss_pred EeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecCcEEEE
Confidence 999999999862 133444444443 38999999998775543 3456778889999888877764
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.7e-17 Score=178.84 Aligned_cols=148 Identities=18% Similarity=0.214 Sum_probs=103.2
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHHhccCC-------CccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHH
Q 041277 385 TIPAGKTVALVGGSGSGKSTVIALLQRFYAP-------LGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENI 457 (1133)
Q Consensus 385 ~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~-------~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni 457 (1133)
-+++|++++|+||||||||||+++|+|.+.| ..|.+++++.+.. + ++++++++|+..++..|+.||+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~--~----~~~i~~~~~~~~~~~~~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF--R----PERIREIAQNRGLDPDEVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC--C----HHHHHHHHHHTTSCHHHHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC--C----HHHHHHHHHHcCCCHHHHhhcE
Confidence 6899999999999999999999999997665 4457888876521 1 2357778888888777999998
Q ss_pred hcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHh-------hCCCEEEEeCcccCC
Q 041277 458 LFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAII-------KAPRILLLDEATSAL 530 (1133)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~-------~~~~illlDE~ts~l 530 (1133)
.+..... .. .|++++..+++++ .+|+++++||||+.+
T Consensus 95 ~~~~~~~-~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l 138 (231)
T 4a74_A 95 YVARAFN-SN-----------------------------------HQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHF 138 (231)
T ss_dssp EEEECCS-HH-----------------------------------HHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHH
T ss_pred EEEecCC-hH-----------------------------------HHHHHHHHHHHHHHHhcccCCceeEEEECChHHHh
Confidence 8754321 11 1122222333333 489999999999999
Q ss_pred ChH-------HH-----HHHHHHHHHHh--CCCeEEEEecCcc----hhhc-CCEEEEEeCCe
Q 041277 531 DSE-------SE-----RVVQEALDKAV--VGRTTIIIAHRLS----TIRN-ADVIAVVQDGQ 574 (1133)
Q Consensus 531 D~~-------~~-----~~i~~~l~~~~--~~~t~i~itH~~~----~~~~-~d~i~~l~~G~ 574 (1133)
|++ .+ ..+.+.+.++. .|.|+|++||..+ .+.+ ||++++|++|+
T Consensus 139 ~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 139 RSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred ccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 984 22 24555555543 4899999999544 4765 99999998753
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.3e-18 Score=189.34 Aligned_cols=160 Identities=11% Similarity=0.140 Sum_probs=100.8
Q ss_pred CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHH
Q 041277 375 ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIK 454 (1133)
Q Consensus 375 ~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~ 454 (1133)
+.++|+|+||++++|+++||+||||||||||+++|+|++ |.+.++ ..++.++|++|++.....|+.
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~~ 76 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTAE 76 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCHH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCHh
Confidence 345899999999999999999999999999999999987 655554 246789999999733345999
Q ss_pred HHHhcCCCC--------CCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCc
Q 041277 455 ENILFGKED--------ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEA 526 (1133)
Q Consensus 455 eni~~~~~~--------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ 526 (1133)
+|+.+.... ...+++.+. ++.+.++.+..+ ..||+||+||+++ ++++.+|+++|+|||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------L~~l~~~~~~~~----~~ls~g~~~r~~~-~~~~~~~~~lilDg~ 142 (245)
T 2jeo_A 77 QKAKALKGQYNFDHPDAFDNDLMHRT---------LKNIVEGKTVEV----PTYDFVTHSRLPE-TTVVYPADVVLFEGI 142 (245)
T ss_dssp HHHHHHTTCCCTTSGGGBCHHHHHHH---------HHHHHTTCCEEE----CCEETTTTEECSS-CEEECCCSEEEEECT
T ss_pred HhhhhhccCCCCCCcccccHHHHHHH---------HHHHHCCCCeec----ccccccccCccCc-eEEecCCCEEEEeCc
Confidence 998653211 112222222 222222333333 4799999999988 688899999999998
Q ss_pred ccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchh-hc-CCEEEEEeCCe
Q 041277 527 TSALDSESERVVQEALDKAVVGRTTIIIAHRLSTI-RN-ADVIAVVQDGQ 574 (1133)
Q Consensus 527 ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~-~~-~d~i~~l~~G~ 574 (1133)
....|.. + .+. .+.|++++||+...+ +. ++++ ++|+
T Consensus 143 ~~~~~~~----l----~~~-~~~~i~v~th~~~~~~r~~~r~~---~~G~ 180 (245)
T 2jeo_A 143 LVFYSQE----I----RDM-FHLRLFVDTDSDVRLSRRVLRDV---RRGR 180 (245)
T ss_dssp TTTTSHH----H----HTT-CSEEEEEECCHHHHHHHHHHHHT---C---
T ss_pred cccccHH----H----HHh-cCeEEEEECCHHHHHHHHHHHHH---HcCC
Confidence 8877754 2 222 378999999974333 33 4433 5664
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=7.9e-19 Score=202.69 Aligned_cols=177 Identities=22% Similarity=0.183 Sum_probs=127.2
Q ss_pred cccceeEEeeC--CCEEEEEcCCCCcHHHHHHHHHhccCCCc----cEEEE----CCeecCCCCHHHHhhhceEEecCCC
Q 041277 378 IFKDFCLTIPA--GKTVALVGGSGSGKSTVIALLQRFYAPLG----GEIIL----DGVSIDKLQLKWLRSQMGLVSQEPA 447 (1133)
Q Consensus 378 ~l~~i~l~i~~--g~~~~ivG~sGsGKSTll~~l~~~~~~~~----G~i~~----~g~~~~~~~~~~~r~~i~~v~Q~~~ 447 (1133)
+.+.|+++|++ |++++|+||||||||||+++|+|+++|++ |+|++ +|.++ .++..++ ++|++++|++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence 46789999999 99999999999999999999999999999 99987 35555 4455555 56999999999
Q ss_pred CccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHh-hCCCEEEEeC-
Q 041277 448 LFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAII-KAPRILLLDE- 525 (1133)
Q Consensus 448 l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~-~~~~illlDE- 525 (1133)
+|..|++|||.++..+....... .+|+|++||..+++++. .+|++++|||
T Consensus 235 ~~~~t~~~nl~~~~~~~~~~~~~----------------------------~~~~~~~~~~~i~~~~~~~~~~lllLdE~ 286 (365)
T 1lw7_A 235 DYAVRHSHKIAFIDTDFITTQAF----------------------------CIQYEGKAHPFLDSMIKEYPFDVTILLKN 286 (365)
T ss_dssp HHHHHHCSSEEEESSCHHHHHHH----------------------------HHHHHSCCCHHHHHHHHHSCCSEEEEEEC
T ss_pred HHHHhccCCEEEEeCCchHHHHH----------------------------HHHHcCCCCHHHHHHHhhcCCCEEEECCC
Confidence 89999999999875321111110 23456677777777764 5888888888
Q ss_pred --cc------cCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhcc
Q 041277 526 --AT------SALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 526 --~t------s~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
|+ +++|+..+..+.+.+.++.+ +.++++++|.-..-+.+|++.++++ +++.|+.+||.+
T Consensus 287 ~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~~~~r~~~~i~~i~~--~l~~~~~~~~~~ 355 (365)
T 1lw7_A 287 NTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYNQVKAVIEK--VLNEEEISELQN 355 (365)
T ss_dssp CCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECSSHHHHHHHHHHHHHH--HTSCCCCSSCCC
T ss_pred CCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH--HhcccchhHhhc
Confidence 54 57888888888888876543 7888888875333333666666654 455666666644
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.9e-17 Score=205.09 Aligned_cols=158 Identities=17% Similarity=0.192 Sum_probs=117.8
Q ss_pred cccEEEEEEEEEcCCC--CCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccC-CCccEEEECCeecCCCCHHH
Q 041277 358 LGEVEFKCVQFAYPSR--PESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYA-PLGGEIILDGVSIDKLQLKW 434 (1133)
Q Consensus 358 ~~~i~~~~v~~~y~~~--~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~-~~~G~i~~~g~~~~~~~~~~ 434 (1133)
.+.|++++. ++|-- .+..+++|+||+ |++++|+|||||||||++++++|+.. ++.|.+.- .
T Consensus 548 ~~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vp------a----- 611 (765)
T 1ewq_A 548 GDRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVP------A----- 611 (765)
T ss_dssp SSSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBS------S-----
T ss_pred CCcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceee------h-----
Confidence 456888887 44431 135689999999 99999999999999999999999874 67786531 0
Q ss_pred HhhhceEEecCCCCccc-cHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHH
Q 041277 435 LRSQMGLVSQEPALFAT-SIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARA 513 (1133)
Q Consensus 435 ~r~~i~~v~Q~~~l~~~-ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa 513 (1133)
.+..+++++| +|.. ++.||+.. .+|+|++|++.+|++
T Consensus 612 ~~~~i~~v~~---i~~~~~~~d~l~~---------------------------------------g~S~~~~e~~~la~i 649 (765)
T 1ewq_A 612 EEAHLPLFDG---IYTRIGASDDLAG---------------------------------------GKSTFMVEMEEVALI 649 (765)
T ss_dssp SEEEECCCSE---EEEECCC---------------------------------------------CCSHHHHHHHHHHHH
T ss_pred hccceeeHHH---hhccCCHHHHHHh---------------------------------------cccHHHHHHHHHHHH
Confidence 1346888877 4543 66666532 258999999999999
Q ss_pred H--hhCCCEEEEeCc---ccCCChHHH-HHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEe
Q 041277 514 I--IKAPRILLLDEA---TSALDSESE-RVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVME 577 (1133)
Q Consensus 514 l--~~~~~illlDE~---ts~lD~~~~-~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~ 577 (1133)
+ +.+|+++||||| ||++|+.+. ..+.+.+.+ .|+|+|++||+.+....| .-.++++++..
T Consensus 650 l~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~~~--~~~v~n~~~~~ 715 (765)
T 1ewq_A 650 LKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTALG--LPRLKNLHVAA 715 (765)
T ss_dssp HHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHTCC--CTTEEEEEEEE
T ss_pred HHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhh--hhcceEEEEEE
Confidence 9 999999999999 999999875 568887776 589999999998876655 22345555544
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.8e-17 Score=183.06 Aligned_cols=151 Identities=23% Similarity=0.236 Sum_probs=104.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCH----HHH--hhhceEEecCCCCccc-cHHHHHhcC
Q 041277 388 AGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQL----KWL--RSQMGLVSQEPALFAT-SIKENILFG 460 (1133)
Q Consensus 388 ~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~----~~~--r~~i~~v~Q~~~l~~~-ti~eni~~~ 460 (1133)
+|++++|+|||||||||++++|+|+++|++|+|.++|.|+..... ..+ |..+++++|++.+++. |+++|+.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999866431 222 4579999999988765 899998653
Q ss_pred CCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHH
Q 041277 461 KEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQE 540 (1133)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~ 540 (1133)
.. .+.+..+-..+...+. ....++..++||++||||+..+|+.++| .||+.+...+.+
T Consensus 181 ~~-------------~~~d~~llDt~G~~~~----~~~~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~ 238 (304)
T 1rj9_A 181 KA-------------RGYDLLFVDTAGRLHT----KHNLMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLE 238 (304)
T ss_dssp HH-------------HTCSEEEECCCCCCTT----CHHHHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHH
T ss_pred Hh-------------CCCCEEEecCCCCCCc----hHHHHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHH
Confidence 10 0000000011111110 1112466779999999999999994444 444444444444
Q ss_pred HHHHHh--CCCeEEEEecCcch
Q 041277 541 ALDKAV--VGRTTIIIAHRLST 560 (1133)
Q Consensus 541 ~l~~~~--~~~t~i~itH~~~~ 560 (1133)
.++... .+.|+|++||...+
T Consensus 239 ~~~~~~~~~~~t~iivTh~d~~ 260 (304)
T 1rj9_A 239 QAKKFHEAVGLTGVIVTKLDGT 260 (304)
T ss_dssp HHHHHHHHHCCSEEEEECTTSS
T ss_pred HHHHHHHHcCCcEEEEECCccc
Confidence 444432 38899999998554
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=5.3e-19 Score=187.98 Aligned_cols=140 Identities=15% Similarity=0.185 Sum_probs=107.3
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCcc---ccHHHHHhcCC-
Q 041277 386 IPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFA---TSIKENILFGK- 461 (1133)
Q Consensus 386 i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~---~ti~eni~~~~- 461 (1133)
.++|++++|+||||||||||+++|.|++.| +++|++|++.+++ .|+++|+.+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 578999999999999999999999999865 5899999998874 37877766532
Q ss_pred -C-CCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHH----HHHHHHHHHHhhCCCEEEEeCcccC------
Q 041277 462 -E-DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQ----KQRIAIARAIIKAPRILLLDEATSA------ 529 (1133)
Q Consensus 462 -~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq----kqri~iARal~~~~~illlDE~ts~------ 529 (1133)
+ ....+.+.++++..++.+.+ ...+..+|+|| +||+++||+++.+|+++++||||++
T Consensus 61 ~~~~~~~~~~~~~l~~~~~~~~~-----------~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i 129 (211)
T 3asz_A 61 HPDAFDLALYLEHAQALLRGLPV-----------EMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKV 129 (211)
T ss_dssp SGGGBCHHHHHHHHHHHHTTCCE-----------EECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEE
T ss_pred ChhhhhHHHHHHHHHHHHcCCCc-----------CCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEE
Confidence 2 22345555555544332222 12244677775 5799999999999999999999999
Q ss_pred -CChHHHHHHHHHHHHH--hCCCeEEEEecCc
Q 041277 530 -LDSESERVVQEALDKA--VVGRTTIIIAHRL 558 (1133)
Q Consensus 530 -lD~~~~~~i~~~l~~~--~~~~t~i~itH~~ 558 (1133)
||+..+..+.+.+.+. .+|+|++.++|+.
T Consensus 130 ~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 130 FVDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EEECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred EEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999888764 3589999999984
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.65 E-value=1.3e-18 Score=212.82 Aligned_cols=191 Identities=15% Similarity=0.236 Sum_probs=121.9
Q ss_pred cEEEEEEEEEcCCCCCCccccce----------eEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCC-CccEEEECCeecC
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDF----------CLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP-LGGEIILDGVSID 428 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i----------~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~-~~G~i~~~g~~~~ 428 (1133)
.++++|+++.|+.. .+++|+.+ +++++. +|||||||||||||+++|+|++.| ++|.|.++|.++.
T Consensus 10 ~i~~~~l~~~~~~~-~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 10 SVAENNLCSQYEEK-VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp ----------CHHH-HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred hhhhhhhhHHHHHH-HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 47899999999642 12345444 366665 999999999999999999999988 7999999999963
Q ss_pred CC---CHHHHhhhceEEecCCCCccc-cHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHH
Q 041277 429 KL---QLKWLRSQMGLVSQEPALFAT-SIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQ 504 (1133)
Q Consensus 429 ~~---~~~~~r~~i~~v~Q~~~l~~~-ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 504 (1133)
.. ....+|+.++|++|++.+++. ||+|||.++. .. +..... .+|
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~------------~~------~~~~~~-----------~~s--- 133 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQ------------NA------IAGEGM-----------GIS--- 133 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHH------------HH------HHCSSS-----------CCC---
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHHHHHHH------------HH------hcCCcc-----------ccc---
Confidence 21 134567899999999988765 9999986421 00 111011 111
Q ss_pred HHHHHHHHHHhhCCCEEEEeCc------ccCCChHHHHHHHHHHHHHh-C--CCeEEEEecCcchh--------hc----
Q 041277 505 KQRIAIARAIIKAPRILLLDEA------TSALDSESERVVQEALDKAV-V--GRTTIIIAHRLSTI--------RN---- 563 (1133)
Q Consensus 505 kqri~iARal~~~~~illlDE~------ts~lD~~~~~~i~~~l~~~~-~--~~t~i~itH~~~~~--------~~---- 563 (1133)
++++.++.+...+|+++++||| |++||+..++.+.+.++++. + +.++++++|+++.. +.
T Consensus 134 ~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~ 213 (608)
T 3szr_A 134 HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPE 213 (608)
T ss_dssp SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSS
T ss_pred hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhc
Confidence 2334444455568999999999 99999999999999998853 2 56778899997632 11
Q ss_pred -CCEEEEEeCCeEEeecCcchhcc
Q 041277 564 -ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 564 -~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
...|+|+.++.+++.|+.+++.+
T Consensus 214 g~rtI~VlTK~Dlv~~g~~~~~~~ 237 (608)
T 3szr_A 214 GDRTIGILTKPDLVDKGTEDKVVD 237 (608)
T ss_dssp CCSEEEEEECGGGSSSSSTTCCCC
T ss_pred CCceEEEecchhhcCcccHHHHHH
Confidence 35689999999988888766543
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=9e-18 Score=187.77 Aligned_cols=163 Identities=16% Similarity=0.095 Sum_probs=80.4
Q ss_pred EEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhc-cCCCccEEEECCeecCCCCHHHHhhhceEE
Q 041277 364 KCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRF-YAPLGGEIILDGVSIDKLQLKWLRSQMGLV 442 (1133)
Q Consensus 364 ~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~-~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v 442 (1133)
+|++++|+.. .++++++|+| +|+||||+|||||++.|.|. ..|++| |.++|.++.. .. . ++.++++
T Consensus 2 ~~l~~~~~~~---~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t~-~-~~~~~~~ 68 (301)
T 2qnr_A 2 SNLPNQVHRK---SVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-TV-Q-IEASTVE 68 (301)
T ss_dssp -------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEE
T ss_pred CCCcceECCE---EEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-cc-e-EeeEEEE
Confidence 4788889643 4899999998 99999999999999999998 889999 8888877643 11 1 3568999
Q ss_pred ecCCCCc-cccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEE
Q 041277 443 SQEPALF-ATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRIL 521 (1133)
Q Consensus 443 ~Q~~~l~-~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~il 521 (1133)
+|++.++ .-|+.|+..++......++.....+. +.+..+..+ .++|||||||+++|||++ ++
T Consensus 69 ~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~--l~~~~~~~~-----------~~~sgg~rqrv~~ara~~----ll 131 (301)
T 2qnr_A 69 IEERGVKLRLTVVDTPGYGDAINCRDCFKTIISY--IDEQFERYL-----------HDESGLNRRHIIDNRVHC----CF 131 (301)
T ss_dssp EC---CCEEEEEEEEC-----------CTTHHHH--HHHHHHHHH-----------HHHTSSCCTTCCCCCCCE----EE
T ss_pred ecCCCcccCcchhhhhhhhhhcCcHHHHHHHHHH--HHHHHHHHH-----------HHhCHHhhhhhhhhhhhh----ee
Confidence 9987665 45888888775321100111111110 111111111 368999999999999985 99
Q ss_pred EEeCcccC-CChHHHHHHHHHHHHHh--CCCeEEEEecCcch
Q 041277 522 LLDEATSA-LDSESERVVQEALDKAV--VGRTTIIIAHRLST 560 (1133)
Q Consensus 522 llDE~ts~-lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~ 560 (1133)
++||||++ ||+... +.++++. .+.++|+.+|++.+
T Consensus 132 ~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 132 YFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTLT 169 (301)
T ss_dssp EEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGSC
T ss_pred eeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCCC
Confidence 99999985 999864 3344433 25678888898753
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-16 Score=182.12 Aligned_cols=147 Identities=22% Similarity=0.250 Sum_probs=106.3
Q ss_pred EEEEEEcCCCCCCccccceeE-------EeeCCCEEEEEcCCCCcHHHHHHHHHhccCCC-ccEEEECCeecCCCCHHHH
Q 041277 364 KCVQFAYPSRPESIIFKDFCL-------TIPAGKTVALVGGSGSGKSTVIALLQRFYAPL-GGEIILDGVSIDKLQLKWL 435 (1133)
Q Consensus 364 ~~v~~~y~~~~~~~~l~~i~l-------~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~-~G~i~~~g~~~~~~~~~~~ 435 (1133)
.+++++|... ..+.|+++.+ ...+|++++|+|||||||||++++|+|+++|+ +|.|...+.++. +. .
T Consensus 92 ~~~~iR~~~~-~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e-~~---~ 166 (356)
T 3jvv_A 92 AGAVFRTIPS-KVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIE-FV---H 166 (356)
T ss_dssp EEEEEEEECC-SCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCC-SC---C
T ss_pred cEEEEEECCC-CCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHH-hh---h
Confidence 5677777543 3456777776 77899999999999999999999999999997 566654433332 21 1
Q ss_pred hhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHh
Q 041277 436 RSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAII 515 (1133)
Q Consensus 436 r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~ 515 (1133)
+...++++|.+.... ..+..+ +|||||.
T Consensus 167 ~~~~~~v~q~~~~~~------------~~~~~~----------------------------------------~La~aL~ 194 (356)
T 3jvv_A 167 ESKKCLVNQREVHRD------------TLGFSE----------------------------------------ALRSALR 194 (356)
T ss_dssp CCSSSEEEEEEBTTT------------BSCHHH----------------------------------------HHHHHTT
T ss_pred hccccceeeeeeccc------------cCCHHH----------------------------------------HHHHHhh
Confidence 234556666542111 011111 9999999
Q ss_pred hCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCC
Q 041277 516 KAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDG 573 (1133)
Q Consensus 516 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G 573 (1133)
.+|+++++|||| |.++.+.+.++ ...|+|+++++|+.+.+..+||+++|..|
T Consensus 195 ~~PdvillDEp~---d~e~~~~~~~~---~~~G~~vl~t~H~~~~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 195 EDPDIILVGEMR---DLETIRLALTA---AETGHLVFGTLHTTSAAKTIDRVVDVFPA 246 (356)
T ss_dssp SCCSEEEESCCC---SHHHHHHHHHH---HHTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred hCcCEEecCCCC---CHHHHHHHHHH---HhcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence 999999999999 77765554443 34599999999999999779999988654
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.61 E-value=3.9e-17 Score=173.22 Aligned_cols=169 Identities=17% Similarity=0.209 Sum_probs=101.8
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhcc-----CCCccEEEE-------CCeecC
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFY-----APLGGEIIL-------DGVSID 428 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~-----~~~~G~i~~-------~g~~~~ 428 (1133)
|+++|++|+|+. +++++ |++++|..++|+|++|||||||++.|+|.. .|+.|.+.. ++..+.
T Consensus 4 l~~~~~~~~~~~----~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~ 77 (210)
T 1pui_A 4 LNYQQTHFVMSA----PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLV 77 (210)
T ss_dssp -------CEEEE----SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEE
T ss_pred hhhhhhhheeec----CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEE
Confidence 789999999962 37888 899999999999999999999999999998 888888764 223322
Q ss_pred CCC-----------HHHHhhhceEEecCCCCccc-cHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCC
Q 041277 429 KLQ-----------LKWLRSQMGLVSQEPALFAT-SIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGER 496 (1133)
Q Consensus 429 ~~~-----------~~~~r~~i~~v~Q~~~l~~~-ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~ 496 (1133)
+.+ .+.+++.++++.|+....++ ++..++..+.. ..++++.+.++. ..+|. -.++.+
T Consensus 78 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~-~~~~~~~~~~~~-------~~~~~---~~v~nK 146 (210)
T 1pui_A 78 DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLK-DLDQQMIEWAVD-------SNIAV---LVLLTK 146 (210)
T ss_dssp ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC-HHHHHHHHHHHH-------TTCCE---EEEEEC
T ss_pred ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCc-hhHHHHHHHHHH-------cCCCe---EEEEec
Confidence 111 12344455555554333322 22223322211 011122222211 12221 123555
Q ss_pred CCCCChHHHHH-HHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh
Q 041277 497 GVQMSGGQKQR-IAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV 546 (1133)
Q Consensus 497 g~~LSgGqkqr-i~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~ 546 (1133)
...+|+||||| +..||+++.+|+++++||||||+|......+.+.|.+..
T Consensus 147 ~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 147 ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp GGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHH
Confidence 56799999999 899999999999999999999999999999998887754
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=4.3e-17 Score=188.76 Aligned_cols=166 Identities=17% Similarity=0.150 Sum_probs=100.6
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhh
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 438 (1133)
+.|+++|++++|+.. .+++|+||+| +|+||||||||||+++|+|...|..| .+|.++...+ ...+..
T Consensus 10 ~~l~~~~l~~~y~~~---~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~~-t~~~~~ 76 (418)
T 2qag_C 10 GYVGFANLPNQVYRK---SVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIKK-TVQVEQ 76 (418)
T ss_dssp -----CCCCCCTTTT---TCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEE
T ss_pred CcEEEEecceeECCE---EEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCcc-ceeeee
Confidence 458999999999743 4899999998 99999999999999999999886555 2333222111 111346
Q ss_pred ceEEecCCCCc-cccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhC
Q 041277 439 MGLVSQEPALF-ATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKA 517 (1133)
Q Consensus 439 i~~v~Q~~~l~-~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 517 (1133)
+++++|++.++ ..||.||+.++... ...+.++. +.+++.. .++.+++||++||||++++
T Consensus 77 i~~v~q~~~~~~~Ltv~Dt~g~~~~~-~~~~~~~~-----i~~~i~~--------------~~~~~l~qr~~IaRal~~d 136 (418)
T 2qag_C 77 SKVLIKEGGVQLLLTIVDTPGFGDAV-DNSNCWQP-----VIDYIDS--------------KFEDYLNAESRVNRRQMPD 136 (418)
T ss_dssp EECC------CEEEEEEECC------------CHH-----HHHHHHH--------------HHHHHTTTSCC-CCCCCCC
T ss_pred EEEEEecCCcccceeeeechhhhhhc-cchhhHHH-----HHHHHHH--------------HHHHHHHHHHHHHHHhccC
Confidence 89999998877 55999999887531 11111111 1223322 3456778899999999999
Q ss_pred CC---EEEEeCcc-cCCChHHHHHHHHHHHHHhCCCeEEEEecCcchh
Q 041277 518 PR---ILLLDEAT-SALDSESERVVQEALDKAVVGRTTIIIAHRLSTI 561 (1133)
Q Consensus 518 ~~---illlDE~t-s~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~ 561 (1133)
|+ ++++|||| ++||+.... .++.+..+.++|+|.|+.+.+
T Consensus 137 ~~~~vlL~ldePt~~~L~~~d~~----~lk~L~~~v~iIlVinK~Dll 180 (418)
T 2qag_C 137 NRVQCCLYFIAPSGHGLKPLDIE----FMKRLHEKVNIIPLIAKADTL 180 (418)
T ss_dssp C-CCEEEEECCC-CCSCCHHHHH----HHHHHTTTSEEEEEEESTTSS
T ss_pred CCeeEEEEEecCcccCCCHHHHH----HHHHHhccCcEEEEEEcccCc
Confidence 99 99999999 699987642 233344578899999987654
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-15 Score=164.69 Aligned_cols=165 Identities=15% Similarity=0.083 Sum_probs=114.6
Q ss_pred ccccceeE-EeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhh---hceEEecCCCCcccc
Q 041277 377 IIFKDFCL-TIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRS---QMGLVSQEPALFATS 452 (1133)
Q Consensus 377 ~~l~~i~l-~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~---~i~~v~Q~~~l~~~t 452 (1133)
+.|+++.. .+++|++++|+||||||||||++.|++...+.+|.|.+.+.+. +...+++ .+++.+|+...
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---- 82 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEYIE---- 82 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGGBT----
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHHhh----
Confidence 47899988 8999999999999999999999999999888888888766443 2333222 34444443211
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCC--EEEEeCcccCC
Q 041277 453 IKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPR--ILLLDEATSAL 530 (1133)
Q Consensus 453 i~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~--illlDE~ts~l 530 (1133)
+++.+-.. ... ... +. + +- ...|.+|.++...+.+...+|+ ++++||||+.+
T Consensus 83 --~~~~~~~~-~~~--------------~~~--~~-~---~~---~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~ 136 (235)
T 2w0m_A 83 --KKLIIIDA-LMK--------------EKE--DQ-W---SL---VNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALF 136 (235)
T ss_dssp --TTEEEEEC-CC--------------------CT-T---BC---SSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGS
T ss_pred --CCEEEEec-ccc--------------ccC--ce-e---ee---cCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhh
Confidence 01111000 000 000 00 0 11 1348999998888888888999 99999999888
Q ss_pred --ChHHHHHHHHHHHHHh--CCCeEEEEecCc--------chhhc-CCEEEEEeCCe
Q 041277 531 --DSESERVVQEALDKAV--VGRTTIIIAHRL--------STIRN-ADVIAVVQDGQ 574 (1133)
Q Consensus 531 --D~~~~~~i~~~l~~~~--~~~t~i~itH~~--------~~~~~-~d~i~~l~~G~ 574 (1133)
|+.....+.+.|+++. .|.|+|+++|.. ..+.. ||+|++|++.+
T Consensus 137 ~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~ 193 (235)
T 2w0m_A 137 LDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRMI 193 (235)
T ss_dssp SSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence 9988888888887763 489999999998 44655 99999998754
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.57 E-value=4.4e-15 Score=150.69 Aligned_cols=78 Identities=31% Similarity=0.366 Sum_probs=70.0
Q ss_pred CCCCChHHHHHHHHHHHHh----hCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEE--
Q 041277 497 GVQMSGGQKQRIAIARAII----KAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVV-- 570 (1133)
Q Consensus 497 g~~LSgGqkqri~iARal~----~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l-- 570 (1133)
...||||||||++|||+++ ++|+++||||||++||+.+++.+.+.|++..++.++|+|||+......||+++.+
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~~ 141 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVSM 141 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEEe
Confidence 3579999999999999996 4579999999999999999999999999888788999999999888889999865
Q ss_pred eCCe
Q 041277 571 QDGQ 574 (1133)
Q Consensus 571 ~~G~ 574 (1133)
++|.
T Consensus 142 ~~g~ 145 (173)
T 3kta_B 142 RDGV 145 (173)
T ss_dssp ETTE
T ss_pred cCCE
Confidence 4664
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.57 E-value=5.3e-16 Score=194.86 Aligned_cols=144 Identities=15% Similarity=0.168 Sum_probs=98.3
Q ss_pred CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHH
Q 041277 375 ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIK 454 (1133)
Q Consensus 375 ~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~ 454 (1133)
+..|++|+||++++|++++|+|||||||||+++++.+..-. .+.-.+||++..-+ .+.
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~--------------------aq~g~~vpa~~~~i--~~~ 716 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIM--------------------AQIGSYVPAEEATI--GIV 716 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHH--------------------HHHTCCBSSSEEEE--ECC
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHH--------------------hhcCccccchhhhh--hHH
Confidence 35689999999999999999999999999999999764211 11112333332100 000
Q ss_pred HHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHH
Q 041277 455 ENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSES 534 (1133)
Q Consensus 455 eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~ 534 (1133)
+++. ...++.+.+. .+..++|+|++|+..|+|+ +.+|+++||||||+|+|+..
T Consensus 717 d~i~---------------~~ig~~d~l~-----------~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~ 769 (918)
T 3thx_B 717 DGIF---------------TRMGAADNIY-----------KGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHD 769 (918)
T ss_dssp SEEE---------------EEC---------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHH
T ss_pred HHHH---------------HhCChHHHHH-----------HhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHH
Confidence 1110 0011111111 1224789999999999999 89999999999999999998
Q ss_pred HHHHH-HHHHHHh--CCCeEEEEecCcchhhcCCEE
Q 041277 535 ERVVQ-EALDKAV--VGRTTIIIAHRLSTIRNADVI 567 (1133)
Q Consensus 535 ~~~i~-~~l~~~~--~~~t~i~itH~~~~~~~~d~i 567 (1133)
...+. ..++.+. .|+|+|++||+++....||+.
T Consensus 770 ~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~~ 805 (918)
T 3thx_B 770 GIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNY 805 (918)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHT
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhhc
Confidence 77776 5555552 489999999999877666653
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.56 E-value=3.4e-17 Score=181.31 Aligned_cols=129 Identities=9% Similarity=0.033 Sum_probs=94.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCC---C
Q 041277 388 AGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKED---A 464 (1133)
Q Consensus 388 ~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~---~ 464 (1133)
++.+++|+|+||||||||+++|.+++.+. | . . ++.+.+|+||+++++.++++|+.++.++ .
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~--------~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G--------G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKLL 93 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G--------G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C--------C-CceEEEeccccccCChHHHHHHhccccccchh
Confidence 56799999999999999999999999764 2 0 0 3345666999999999999999875321 0
Q ss_pred CHHHHHHHHHHhchHHHHHhCCCccccc------ccCCCCCCChHHHHHHHHH--HHHhhCCCEEEEeCcccCCChHH
Q 041277 465 SMEEVIEAAKASNAHNFIRQLPQQYDTQ------VGERGVQMSGGQKQRIAIA--RAIIKAPRILLLDEATSALDSES 534 (1133)
Q Consensus 465 ~~~~~~~~~~~~~~~~~i~~l~~g~~t~------~~~~g~~LSgGqkqri~iA--Ral~~~~~illlDE~ts~lD~~~ 534 (1133)
......++.+...+.+++..+++|++|. +...+.++||||+||+++| |++ +|+|+|+||+++++|++.
T Consensus 94 ~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 94 QGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp SSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 0000011222334567889999997754 4566789999999999998 666 999999999999999864
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.1e-15 Score=188.08 Aligned_cols=152 Identities=13% Similarity=0.167 Sum_probs=104.4
Q ss_pred CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCC-CccEEEECCeecCCCCHHHHhhhceEEecCCCCccc-cH
Q 041277 376 SIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP-LGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFAT-SI 453 (1133)
Q Consensus 376 ~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~-~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-ti 453 (1133)
..+++|+||+ ++|++++|+|||||||||++++|+|+..+ ..|. .+.. -+..+++++| +|.. ++
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~------~vpa-----~~~~i~~~~~---i~~~~~~ 659 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS------YVPA-----QKVEIGPIDR---IFTRVGA 659 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC------CBSS-----SEEEECCCCE---EEEEEC-
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc------ccch-----hcccceeHHH---HHhhCCH
Confidence 4689999999 99999999999999999999999997532 2231 1111 0234666655 4433 55
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChH
Q 041277 454 KENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSE 533 (1133)
Q Consensus 454 ~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~ 533 (1133)
.||+..+. .++|+|+++ ++.+...+.+|+++|||||++|+|+.
T Consensus 660 ~d~l~~~~------------------------------------stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~ 702 (800)
T 1wb9_A 660 ADDLASGR------------------------------------STFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTY 702 (800)
T ss_dssp ----------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSS
T ss_pred HHHHHhhh------------------------------------hhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChh
Confidence 55543210 235666664 44444568999999999999999997
Q ss_pred HHHHH-HHHHHHHh--CCCeEEEEecCcchhhcCCEEEEEeCCeEEeec
Q 041277 534 SERVV-QEALDKAV--VGRTTIIIAHRLSTIRNADVIAVVQDGQVMETG 579 (1133)
Q Consensus 534 ~~~~i-~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g 579 (1133)
....+ .+.++.+. .|.|+|++||+.+....||++..+++|++....
T Consensus 703 d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~~~ 751 (800)
T 1wb9_A 703 DGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDALE 751 (800)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEEEE
Confidence 65544 56666653 389999999999887779988888888886543
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=6.4e-16 Score=164.03 Aligned_cols=144 Identities=13% Similarity=0.125 Sum_probs=102.1
Q ss_pred eEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCC--CccEEEECCeecCCCCHHHHhhhceEEecCCCCccc-cH----HH
Q 041277 383 CLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP--LGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFAT-SI----KE 455 (1133)
Q Consensus 383 ~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~--~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-ti----~e 455 (1133)
.-..++|++++|+||||||||||+++|+|+++| ..|.|.+.+.+.+. ..++.++|++|++.+|.. ++ .|
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E 85 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLE 85 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEE
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHH
Confidence 346789999999999999999999999999986 78999998876542 234679999999988765 44 35
Q ss_pred HHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHH
Q 041277 456 NILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESE 535 (1133)
Q Consensus 456 ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~ 535 (1133)
|+.+.... | |-.+++ ++.++..++++||| ||+.+.
T Consensus 86 ~~~~~~~~-------------------------y------------g~~~~~---v~~~l~~G~illLD-----LD~~~~ 120 (219)
T 1s96_A 86 HAEVFGNY-------------------------Y------------GTSREA---IEQVLATGVDVFLD-----IDWQGA 120 (219)
T ss_dssp EEEETTEE-------------------------E------------EEEHHH---HHHHHTTTCEEEEE-----CCHHHH
T ss_pred HHHHHhcc-------------------------C------------CCCHHH---HHHHHhcCCeEEEE-----ECHHHH
Confidence 54432110 0 000111 23444557999999 999999
Q ss_pred HHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhcc
Q 041277 536 RVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 536 ~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
+.+.+.+. ++.|+++++|+++.+.. |+ +++| .++++++.+
T Consensus 121 ~~i~~~l~---~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~~ 160 (219)
T 1s96_A 121 QQIRQKMP---HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIAK 160 (219)
T ss_dssp HHHHHHCT---TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHHH
T ss_pred HHHHHHcc---CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHHH
Confidence 99988775 58999999999998765 32 5666 466666643
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.9e-15 Score=173.73 Aligned_cols=179 Identities=15% Similarity=0.170 Sum_probs=113.0
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCE--EEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKT--VALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRS 437 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~--~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~ 437 (1133)
.+++++ +++|++ .+ |+++||++++|++ ++|+||||||||||+++|+|+. ++|.++........++
T Consensus 16 ~l~~~~-~~~y~~---~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~ 82 (427)
T 2qag_B 16 TVPLAG-HVGFDS---LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQ 82 (427)
T ss_dssp -CCCCC-CC-CC-----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEE
T ss_pred eEEEee-EEEECC---ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEe
Confidence 355666 778863 24 9999999999999 9999999999999999999984 4455544333333456
Q ss_pred hceEEecCCCCcc-ccHHHHHhcCCCCCCHHH----HHHHHHHhchHHHHHhC-------CCccccc-------ccCCCC
Q 041277 438 QMGLVSQEPALFA-TSIKENILFGKEDASMEE----VIEAAKASNAHNFIRQL-------PQQYDTQ-------VGERGV 498 (1133)
Q Consensus 438 ~i~~v~Q~~~l~~-~ti~eni~~~~~~~~~~~----~~~~~~~~~~~~~i~~l-------~~g~~t~-------~~~~g~ 498 (1133)
.++|++|++.++. .|+.||+.+|.. .+.+. +.+.++. ...+++... +..-|+. +-+.+.
T Consensus 83 ~i~~v~Q~~~l~~~ltv~D~~~~g~~-~~~~~~~~~i~~~i~~-q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~ 160 (427)
T 2qag_B 83 SNTYDLQESNVRLKLTIVSTVGFGDQ-INKEDSYKPIVEFIDA-QFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGH 160 (427)
T ss_dssp EEEEEEEC--CEEEEEEEEEECCCC--CCHHHHSHHHHHHHHH-HHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC-
T ss_pred eEEEEeecCccccccchhhhhhhhhc-cccchhhhHHHHHHHH-HHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCC
Confidence 7999999998874 599999999864 22211 1111111 122333332 1111222 123344
Q ss_pred CCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHH-Hh-CCCeEEEEec
Q 041277 499 QMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDK-AV-VGRTTIIIAH 556 (1133)
Q Consensus 499 ~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~-~~-~~~t~i~itH 556 (1133)
.|+-.+ +.++++|..+++++++|+|+..|.+.....+.+.+++ +. .|.+++.++.
T Consensus 161 ~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 161 SLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp --CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred CCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCC
Confidence 577666 7999999999999999999999998877777777775 43 4777777764
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.48 E-value=3.8e-14 Score=157.23 Aligned_cols=151 Identities=20% Similarity=0.216 Sum_probs=98.1
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHh-cCCCC
Q 041277 385 TIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENIL-FGKED 463 (1133)
Q Consensus 385 ~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~-~~~~~ 463 (1133)
.+++|++++|+||||||||||++.+++... .|++. .|.+... +..+.|+..+... ..+.+++. ++. +
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g~-~ 93 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGELP------TGPVIYLPAEDPP--TAIHHRLHALGA-H 93 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCCC------CCCEEEEESSSCH--HHHHHHHHHHHT-T
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccCC------CccEEEEECCCCH--HHHHHHHHHHHh-h
Confidence 478999999999999999999999998764 46653 3443321 2357777765432 22322221 222 1
Q ss_pred CCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCccc--CCChHHH---HHH
Q 041277 464 ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATS--ALDSESE---RVV 538 (1133)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts--~lD~~~~---~~i 538 (1133)
....+..+..+... +....+.....||+||+|++ |+++.+|+++++||||+ ++|.... ..+
T Consensus 94 ~~~~~~~~~~~~l~-----------l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~ 159 (279)
T 1nlf_A 94 LSAEERQAVADGLL-----------IQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQV 159 (279)
T ss_dssp SCHHHHHHHHHHEE-----------ECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHH
T ss_pred cChhhhhhccCceE-----------EeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHH
Confidence 22222222222221 22233455678999998875 68899999999999999 9998544 667
Q ss_pred HHHHHHHh--CCCeEEEEecCcchh
Q 041277 539 QEALDKAV--VGRTTIIIAHRLSTI 561 (1133)
Q Consensus 539 ~~~l~~~~--~~~t~i~itH~~~~~ 561 (1133)
.+.|.++. .|+|+|+++|.....
T Consensus 160 ~~~L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 160 IGRMEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHHHHHHHHHCCEEEEEEEC----
T ss_pred HHHHHHHHHHcCCEEEEEecCCCcc
Confidence 77777763 489999999987654
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=1e-15 Score=172.80 Aligned_cols=153 Identities=16% Similarity=0.102 Sum_probs=108.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc--------CCCccEEEECCeecCCCC---------------HHHHhhhceEE---e
Q 041277 390 KTVALVGGSGSGKSTVIALLQRFY--------APLGGEIILDGVSIDKLQ---------------LKWLRSQMGLV---S 443 (1133)
Q Consensus 390 ~~~~ivG~sGsGKSTll~~l~~~~--------~~~~G~i~~~g~~~~~~~---------------~~~~r~~i~~v---~ 443 (1133)
++++|+|+||||||||++.|+|++ .|+.|+|.+||.++...+ ..++++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 589999999999999999999997 789999999999987653 34677789988 7
Q ss_pred cCCCC-ccccHHHHHhcCCCCCCHHHHHHHH-HHhchHHHHHhCCCcccccccC-----CCCCCChHHHHHHHHHHHHhh
Q 041277 444 QEPAL-FATSIKENILFGKEDASMEEVIEAA-KASNAHNFIRQLPQQYDTQVGE-----RGVQMSGGQKQRIAIARAIIK 516 (1133)
Q Consensus 444 Q~~~l-~~~ti~eni~~~~~~~~~~~~~~~~-~~~~~~~~i~~l~~g~~t~~~~-----~g~~LSgGqkqri~iARal~~ 516 (1133)
|++.+ +..++.||..++.|. .+.+.. ......+ ...+ ++.-+.++- .-.+||+||+||+..+++++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~----~~~~~~~~~~~~~~-~~~l-~~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPG----PIIQTFFSHEVLCQ-RYLL-DGVIALVDAVHADEQMNQFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHH----HHHHHHHHSHHHHH-HEEE-EEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCHH----HHHHHHhcCccccC-eEEE-CCEEEEEEHHHHHHHHhhchHHHHHHHhCCEEEEE
Confidence 88764 577999999887542 221111 0000000 0000 011111111 011589999999999999999
Q ss_pred CCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcc
Q 041277 517 APRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLS 559 (1133)
Q Consensus 517 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~ 559 (1133)
+|+++ ||| +.+.+.++++.++.|+++++|+..
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~ 190 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARINARAPVYTVTHGDI 190 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSCC
T ss_pred CcccC--CHH---------HHHHHHHHHhCCCCeEEEecccCC
Confidence 99987 888 677777777767899999999743
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=7.1e-14 Score=149.11 Aligned_cols=151 Identities=13% Similarity=0.058 Sum_probs=96.5
Q ss_pred ccccceeE-EeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHH
Q 041277 377 IIFKDFCL-TIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKE 455 (1133)
Q Consensus 377 ~~l~~i~l-~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~e 455 (1133)
+.|+++.. .+++|++++|+||||||||||++.+++ .+..+.++++..+ ..+... +.+
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~--~~~~~~------------------~~~ 64 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG--GFSPER------------------LVQ 64 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC--CCCHHH------------------HHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC--CCCHHH------------------HHH
Confidence 35777765 799999999999999999999999999 3333344443321 111111 111
Q ss_pred HHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChH--HHHHHHHHHHHhhC-CCEEEEeCcccCCCh
Q 041277 456 NILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGG--QKQRIAIARAIIKA-PRILLLDEATSALDS 532 (1133)
Q Consensus 456 ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG--qkqri~iARal~~~-~~illlDE~ts~lD~ 532 (1133)
.... .....++ ..+.+. + ..+|++ |+|+++.+|+++++ |+++++||||+.+|+
T Consensus 65 ~~~~--~~~~~~~------------~~~~~~------~----~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~ 120 (220)
T 2cvh_A 65 MAET--RGLNPEE------------ALSRFI------L----FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRA 120 (220)
T ss_dssp HHHT--TTCCHHH------------HHHHEE------E----ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTG
T ss_pred HHHh--cCCChHH------------HhhcEE------E----EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhh
Confidence 1110 0011111 111111 1 123444 46789999999986 999999999999998
Q ss_pred HHH-----H---HHHHHHHHHh--CCCeEEEEecCcc-------------hhhc-CCEEEEEeCC
Q 041277 533 ESE-----R---VVQEALDKAV--VGRTTIIIAHRLS-------------TIRN-ADVIAVVQDG 573 (1133)
Q Consensus 533 ~~~-----~---~i~~~l~~~~--~~~t~i~itH~~~-------------~~~~-~d~i~~l~~G 573 (1133)
..+ + .+.+.|+++. .+.|+|+++|... .+.+ ||.|++|++.
T Consensus 121 ~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 121 EENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp GGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 532 2 3444465553 3899999999865 3444 9999999765
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.7e-15 Score=158.07 Aligned_cols=138 Identities=14% Similarity=0.025 Sum_probs=89.7
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCC
Q 041277 385 TIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDA 464 (1133)
Q Consensus 385 ~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~ 464 (1133)
.+++|++++|+|||||||||++++|+|. |..|.|.++|.++..... .++.++|++|++. ...|+.+|+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~--~~~~~~~~~~~~~-~~~~v~~~l~~~~--- 76 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK--HGRIDPWLPQSHQ-QNRMIMQIAADVA--- 76 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC--SSCCCTTSSSHHH-HHHHHHHHHHHHH---
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh--cccccCCccchhh-hhHHHHHHHHHHH---
Confidence 4789999999999999999999999997 788999999977643211 1234688888765 4568888886521
Q ss_pred CHHHHHHHHHHhchHHHHHhCCC--ccccc--ccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHH
Q 041277 465 SMEEVIEAAKASNAHNFIRQLPQ--QYDTQ--VGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQE 540 (1133)
Q Consensus 465 ~~~~~~~~~~~~~~~~~i~~l~~--g~~t~--~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~ 540 (1133)
.. ..+ .+....++.... +.+.. .+.....+|+||+||+++||++.++|+++ +|++..+.+.+
T Consensus 77 ---~~--~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~ 142 (191)
T 1zp6_A 77 ---GR--YAK-EGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHS 142 (191)
T ss_dssp ---HH--HHH-TSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHH
T ss_pred ---HH--Hhc-cCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHH
Confidence 00 000 000000000000 00000 02233579999999999999999999876 57776666666
Q ss_pred HHHH
Q 041277 541 ALDK 544 (1133)
Q Consensus 541 ~l~~ 544 (1133)
.+..
T Consensus 143 ~~~~ 146 (191)
T 1zp6_A 143 QFAD 146 (191)
T ss_dssp HTTC
T ss_pred HHhc
Confidence 5544
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.45 E-value=7.1e-15 Score=149.27 Aligned_cols=84 Identities=24% Similarity=0.206 Sum_probs=65.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHhhhcCCC---CCeEEECCcccCCCC---hhHHh-hccc----ccccccccccccHHHHhc
Q 041277 1031 KSTALVGQSGSGKSTIIGLIERFYDPL---KGDVKIDDRDIRSYH---LRSLR-RHIA----LVSQEPTLFAGTIRENIA 1099 (1133)
Q Consensus 1031 e~vaIVG~SGSGKSTL~~LL~R~ydp~---~G~I~IdG~dI~~i~---l~~LR-~~is----iV~Qdp~LF~gTIreNI~ 1099 (1133)
+++||||+||||||||+++|.|+|+|+ .|.|.+||.|+.+++ .+.+| ++++ +++|++++| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 689999999999999999999999998 899999999999887 78999 5899 899999999 322
Q ss_pred cCCCCCCCHHHHHHHHHHcchHHHHhh-cccccCC
Q 041277 1100 YGASDEIDESEIVEAAKAANAHDFIAG-LNEGYDT 1133 (1133)
Q Consensus 1100 ~g~~~~~sdeei~~Al~~a~l~dfI~~-LP~G~dT 1133 (1133)
+ ++ ++ .|+++++|++ || ||||
T Consensus 77 -~-----~~-~~-----~a~l~~~i~~~l~-g~dt 98 (171)
T 2f1r_A 77 -V-----SE-EE-----GNDLDWIYERYLS-DYDL 98 (171)
T ss_dssp -C-----CH-HH-----HTCHHHHHHHHTT-TCSE
T ss_pred -C-----Ch-hh-----hhCHHHHHHhhCC-CCCE
Confidence 1 12 22 8899999999 99 9986
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.44 E-value=4.3e-16 Score=164.97 Aligned_cols=118 Identities=21% Similarity=0.206 Sum_probs=86.4
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhc-CCCCC
Q 041277 386 IPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILF-GKEDA 464 (1133)
Q Consensus 386 i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~-~~~~~ 464 (1133)
.++|++++|+||||||||||+++|+|+++|. | ..+++|+|+.+.++.+..+|+.. .....
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~~~~ 79 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPRKGA 79 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGGTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhcccccCCC
Confidence 5789999999999999999999999999876 4 14778888887777777666531 11010
Q ss_pred CHHHHHHHHHHhchHHHHHhCCCc--ccccccCCCCCCChHHHHHHHHH-HHHhhCCCEEEEeCcc
Q 041277 465 SMEEVIEAAKASNAHNFIRQLPQQ--YDTQVGERGVQMSGGQKQRIAIA-RAIIKAPRILLLDEAT 527 (1133)
Q Consensus 465 ~~~~~~~~~~~~~~~~~i~~l~~g--~~t~~~~~g~~LSgGqkqri~iA-Ral~~~~~illlDE~t 527 (1133)
..+.+...+.+++..++.| +++.+.+++..+|+||+||+++| |+++.++.++++|||.
T Consensus 80 -----~~~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 80 -----PETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp -----GGGBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred -----CchhhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence 0001111223344444444 66778889999999999999998 9999999998899984
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.42 E-value=3.2e-14 Score=151.53 Aligned_cols=93 Identities=17% Similarity=0.135 Sum_probs=63.5
Q ss_pred ccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCCh-hHHhhcccccccccccc------
Q 041277 1018 MIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHL-RSLRRHIALVSQEPTLF------ 1090 (1133)
Q Consensus 1018 ~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l-~~LR~~isiV~Qdp~LF------ 1090 (1133)
.-|+||||+|++|+.+|||||||||||||+++|.|++ | |+|.+ |+++.+.+. ...|+.++|++|+|.+|
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 3689999999999999999999999999999999999 6 99999 888765433 34678999999998665
Q ss_pred -----cccHHHHhccCCCCCCCHHHHHHHHHHcc
Q 041277 1091 -----AGTIRENIAYGASDEIDESEIVEAAKAAN 1119 (1133)
Q Consensus 1091 -----~gTIreNI~~g~~~~~sdeei~~Al~~a~ 1119 (1133)
.+++++| .||. +++++.++++...
T Consensus 87 ~~~l~~~~~~~~-~~g~----~~~~i~~~l~~~~ 115 (218)
T 1z6g_A 87 EDFLEYDNYANN-FYGT----LKSEYDKAKEQNK 115 (218)
T ss_dssp TCEEEEEEETTE-EEEE----EHHHHHHHHHTTC
T ss_pred cchhhhhhcccc-cCCC----cHHHHHHHHhCCC
Confidence 3455566 4543 2456777766543
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.39 E-value=8.6e-17 Score=167.67 Aligned_cols=166 Identities=14% Similarity=0.075 Sum_probs=108.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCc-cccHHHHHhcCCCCCCHH
Q 041277 389 GKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALF-ATSIKENILFGKEDASME 467 (1133)
Q Consensus 389 g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~-~~ti~eni~~~~~~~~~~ 467 (1133)
|++++|+|||||||||+++.|++ |.+|.+.++|.++... ..+++++|....+ ..++++|+.+..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~------ 66 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITDLT------ 66 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHHHH------
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHHHH------
Confidence 68899999999999999999997 6789999998765332 2467788766433 347777775310
Q ss_pred HHHHHHHHhchHHHHHhCCCcccccccC----CCCCC--ChHHHHHHHHHH------HHhhCCCEEEEeCcccCCChHHH
Q 041277 468 EVIEAAKASNAHNFIRQLPQQYDTQVGE----RGVQM--SGGQKQRIAIAR------AIIKAPRILLLDEATSALDSESE 535 (1133)
Q Consensus 468 ~~~~~~~~~~~~~~i~~l~~g~~t~~~~----~g~~L--SgGqkqri~iAR------al~~~~~illlDE~ts~lD~~~~ 535 (1133)
....+ .+. +.=.+...+. .-..+ |+|++|++.++. +++.+|+...+|+ ++|+...
T Consensus 67 --~~~~~-~~~-------~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~ 133 (189)
T 2bdt_A 67 --VNFLL-AQN-------DVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCL 133 (189)
T ss_dssp --HHHHH-TTC-------EEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGG
T ss_pred --HHHHh-cCC-------cEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHH
Confidence 00000 000 0000100000 00124 889888988888 8999999888884 7999877
Q ss_pred HHHHHHHHHHh-CCCeEEEEecC-cchhhc-CCEEEEEeCCeEEeecCcchhc
Q 041277 536 RVVQEALDKAV-VGRTTIIIAHR-LSTIRN-ADVIAVVQDGQVMETGSHDELI 585 (1133)
Q Consensus 536 ~~i~~~l~~~~-~~~t~i~itH~-~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 585 (1133)
+. .+.+.... .+.++|.++|. ++.+.. ||+|+ ++|+++..|+++-|-
T Consensus 134 ~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~~ 183 (189)
T 2bdt_A 134 EL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPLE 183 (189)
T ss_dssp HH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC-------
T ss_pred HH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCchh
Confidence 66 77776654 46899999999 998876 99998 999999999887653
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=8.8e-16 Score=174.21 Aligned_cols=177 Identities=15% Similarity=0.187 Sum_probs=116.2
Q ss_pred EEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCH----HHHhh
Q 041277 362 EFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQL----KWLRS 437 (1133)
Q Consensus 362 ~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~----~~~r~ 437 (1133)
+++|++++|+. ..+|+++||++++|++++|+||||||||||++.|+|++.|++|+|.+.|.|+..... ...|.
T Consensus 31 e~~~~~~~~~~---~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~ 107 (337)
T 2qm8_A 31 ESRRADHRAAV---RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKT 107 (337)
T ss_dssp TCSSHHHHHHH---HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGG
T ss_pred eeCCcccccCh---HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhh
Confidence 34445556642 248999999999999999999999999999999999999999999999998854321 23467
Q ss_pred hceEEecCCCCccc-------------cHHHHHh-c---CCC---------CCCHHHHHHHHHH-------------hch
Q 041277 438 QMGLVSQEPALFAT-------------SIKENIL-F---GKE---------DASMEEVIEAAKA-------------SNA 478 (1133)
Q Consensus 438 ~i~~v~Q~~~l~~~-------------ti~eni~-~---~~~---------~~~~~~~~~~~~~-------------~~~ 478 (1133)
++++++|++.+|.. +++|.+. + +.+ ..+...+.+.++. ..+
T Consensus 108 ~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i 187 (337)
T 2qm8_A 108 RMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGI 187 (337)
T ss_dssp GSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------C
T ss_pred hheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHH
Confidence 89999999988842 2333321 0 000 0011111110000 000
Q ss_pred HHHHHhCCCccc-ccccC-CCCCCChHHHHHHHHHHHHhh------CCCEEEEeCcccCCChHHHHHHHHHHHHH
Q 041277 479 HNFIRQLPQQYD-TQVGE-RGVQMSGGQKQRIAIARAIIK------APRILLLDEATSALDSESERVVQEALDKA 545 (1133)
Q Consensus 479 ~~~i~~l~~g~~-t~~~~-~g~~LSgGqkqri~iARal~~------~~~illlDE~ts~lD~~~~~~i~~~l~~~ 545 (1133)
...+...|.-.- +.+.. ....+|+|++|++..|++++. +|+++. +||+|.+....+.+.|.+.
T Consensus 188 ~~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 188 KKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp CTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHH
T ss_pred HHHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHH
Confidence 000111221100 11110 113579999999999999987 688886 9999999999998888764
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=2.3e-14 Score=150.18 Aligned_cols=83 Identities=20% Similarity=0.330 Sum_probs=71.7
Q ss_pred eeCCCEEEEEcCCCCCHHHHHHHHhhhcC-------------CCCCeEEECCcccCCCChhHHhhccccccccccccccc
Q 041277 1027 IEAGKSTALVGQSGSGKSTIIGLIERFYD-------------PLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGT 1093 (1133)
Q Consensus 1027 I~~Ge~vaIVG~SGSGKSTL~~LL~R~yd-------------p~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gT 1093 (1133)
+++|++++||||||||||||+++|.|+|+ |..|+ +||+|+..++.+.+|+.+ +|++++|++|
T Consensus 1 m~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~ 75 (198)
T 1lvg_A 1 MAGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAE 75 (198)
T ss_dssp ----CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeee
Confidence 36899999999999999999999999997 88898 699999999999999886 7999999999
Q ss_pred HHHHhccCCCCCCCHHHHHHHHHHcc
Q 041277 1094 IRENIAYGASDEIDESEIVEAAKAAN 1119 (1133)
Q Consensus 1094 IreNI~~g~~~~~sdeei~~Al~~a~ 1119 (1133)
+++|+ ||. ++++++++++.+.
T Consensus 76 ~~~n~-~g~----~~~~i~~~~~~~~ 96 (198)
T 1lvg_A 76 FSGNL-YGT----SKEAVRAVQAMNR 96 (198)
T ss_dssp ETTEE-EEE----EHHHHHHHHHTTC
T ss_pred ecCcc-CCC----CHHHHHHHHHcCC
Confidence 99998 763 5789999998643
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.38 E-value=6.9e-13 Score=143.78 Aligned_cols=146 Identities=16% Similarity=0.258 Sum_probs=90.3
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHHh--ccCC-----CccEEEECCeecCC-CCHHHHhhhceEEecCCCCccccHHHH
Q 041277 385 TIPAGKTVALVGGSGSGKSTVIALLQR--FYAP-----LGGEIILDGVSIDK-LQLKWLRSQMGLVSQEPALFATSIKEN 456 (1133)
Q Consensus 385 ~i~~g~~~~ivG~sGsGKSTll~~l~~--~~~~-----~~G~i~~~g~~~~~-~~~~~~r~~i~~v~Q~~~l~~~ti~en 456 (1133)
-+++|++++|+||||||||||++.|++ ..+| ..|.+++++.+... .....+++++++.+|+ +.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhC
Confidence 488999999999999999999999999 4554 67889998865311 1123344567766553 4556
Q ss_pred HhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHh--hCCCEEEEeCcccCCChH-
Q 041277 457 ILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAII--KAPRILLLDEATSALDSE- 533 (1133)
Q Consensus 457 i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~--~~~~illlDE~ts~lD~~- 533 (1133)
+.+..+ .+.++..+. +.-+++++ .+|+++++|||++.+|+.
T Consensus 93 ~~~~~~-~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~lliiD~~~~~~~~~~ 136 (243)
T 1n0w_A 93 VAYARA-FNTDHQTQL-----------------------------------LYQASAMMVESRYALLIVDSATALYRTDY 136 (243)
T ss_dssp EEEEEC-CSHHHHHHH-----------------------------------HHHHHHHHHHSCEEEEEEETSSGGGC---
T ss_pred eEEEec-CCHHHHHHH-----------------------------------HHHHHHHHhcCCceEEEEeCchHHHHHHh
Confidence 554322 122222111 11112222 589999999999999985
Q ss_pred ------HH-----HHHHHHHHHHh--CCCeEEEEecCcch-------------------hh-cCCEEEEEeCC
Q 041277 534 ------SE-----RVVQEALDKAV--VGRTTIIIAHRLST-------------------IR-NADVIAVVQDG 573 (1133)
Q Consensus 534 ------~~-----~~i~~~l~~~~--~~~t~i~itH~~~~-------------------~~-~~d~i~~l~~G 573 (1133)
.+ ..+...+.++. .|.|+|+++|.... +. .||.+++|++|
T Consensus 137 ~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 137 SGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 32 23333444432 38999999996543 22 48999999875
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.37 E-value=4.1e-14 Score=164.29 Aligned_cols=154 Identities=20% Similarity=0.286 Sum_probs=103.4
Q ss_pred ccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCC----HHH--HhhhceEEecCCCCcc-c
Q 041277 379 FKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQ----LKW--LRSQMGLVSQEPALFA-T 451 (1133)
Q Consensus 379 l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~----~~~--~r~~i~~v~Q~~~l~~-~ 451 (1133)
-+++||++++|++++|+|+||||||||+++|+|++.|++|+|.++|.|..... ... .|++|+|++|++.++. .
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 36899999999999999999999999999999999999999999887765421 122 3678999999987664 5
Q ss_pred cHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCC--CCCCChHHHHHHHHHHHHhh-CC-CEEEEeCcc
Q 041277 452 SIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGER--GVQMSGGQKQRIAIARAIIK-AP-RILLLDEAT 527 (1133)
Q Consensus 452 ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~--g~~LSgGqkqri~iARal~~-~~-~illlDE~t 527 (1133)
|+++|+.++.... . +.+ + .|| .|.. -.+|-.--+||+.++|++.. .| .++|..+|+
T Consensus 363 tV~e~l~~a~~~~-------------~-DvV--L---IDT-aGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDat 422 (503)
T 2yhs_A 363 VIFDAIQAAKARN-------------I-DVL--I---ADT-AGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDAS 422 (503)
T ss_dssp HHHHHHHHHHHTT-------------C-SEE--E---ECC-CCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGG
T ss_pred HHHHHHHHHHhcC-------------C-CEE--E---EeC-CCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCc
Confidence 9999998652100 0 000 0 011 0110 00122223578889998754 46 466666788
Q ss_pred cCCChHHHHHHHHHHHHHhCCCeEEEEec
Q 041277 528 SALDSESERVVQEALDKAVVGRTTIIIAH 556 (1133)
Q Consensus 528 s~lD~~~~~~i~~~l~~~~~~~t~i~itH 556 (1133)
++.|.... .+.+.+ .-+.|.+++||
T Consensus 423 tGq~al~~---ak~f~~-~~~itgvIlTK 447 (503)
T 2yhs_A 423 TGQNAVSQ---AKLFHE-AVGLTGITLTK 447 (503)
T ss_dssp GTHHHHHH---HHHHHH-HTCCSEEEEEC
T ss_pred ccHHHHHH---HHHHHh-hcCCCEEEEEc
Confidence 88655422 111211 23789999999
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=2.7e-14 Score=159.80 Aligned_cols=100 Identities=13% Similarity=0.203 Sum_probs=80.3
Q ss_pred CcccEEEEeEEEECCCCCCCccccCccEE-----------------------eeCCCEEEEEcCCCCCHHHHHHHHhhhc
Q 041277 998 ITGNIELQNVHFAYPARPDVMIFEGFSIK-----------------------IEAGKSTALVGQSGSGKSTIIGLIERFY 1054 (1133)
Q Consensus 998 ~~g~I~f~nVsF~Y~~~~~~~vL~~isl~-----------------------I~~Ge~vaIVG~SGSGKSTL~~LL~R~y 1054 (1133)
..+.|+++||++.|. |+++++++. +++|+.+||+||||||||||+++|.+++
T Consensus 40 ~~~~i~~~~v~~~y~-----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 40 LGEQIDLLEVEEVYL-----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp TTCCCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEeeehhhhhh-----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 356799999999993 467887775 8999999999999999999999999999
Q ss_pred CCCCCeEEECCcccCCCChhHHhhcccccccccccccccHHHHhcc----CCCCCCCHHHHHHHHHHcc
Q 041277 1055 DPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAY----GASDEIDESEIVEAAKAAN 1119 (1133)
Q Consensus 1055 dp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~----g~~~~~sdeei~~Al~~a~ 1119 (1133)
+|..|. +++++|+||+++|..|++||+.+ |.|+..+.+.+.+.++..+
T Consensus 115 ~~~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~ 166 (312)
T 3aez_A 115 ARWDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSVK 166 (312)
T ss_dssp HTSTTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHH
T ss_pred cccCCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHhC
Confidence 997663 57999999999999999999975 3232333445555555443
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.34 E-value=9.1e-14 Score=139.24 Aligned_cols=88 Identities=15% Similarity=0.112 Sum_probs=73.4
Q ss_pred EeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcccccc
Q 041277 1005 QNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVS 1084 (1133)
Q Consensus 1005 ~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~ 1084 (1133)
+|++++|+ +..+++++||+|++|+.+||+||+|||||||+++|.|+. |++|+|.++|.++.+. ...+ .+|+
T Consensus 11 ~~~~~~~g---~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~~---~~~~ 81 (158)
T 1htw_A 11 EFSMLRFG---KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNIA---GKMI 81 (158)
T ss_dssp HHHHHHHH---HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEET---TEEE
T ss_pred HHHHHHHH---HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccCC---Ccce
Confidence 45566674 235899999999999999999999999999999999999 9999999999998531 1122 2799
Q ss_pred cccccccccHHHHhc-cC
Q 041277 1085 QEPTLFAGTIRENIA-YG 1101 (1133)
Q Consensus 1085 Qdp~LF~gTIreNI~-~g 1101 (1133)
|++.+|.-|+.||+. +|
T Consensus 82 q~~~l~~ltv~e~l~~~g 99 (158)
T 1htw_A 82 YHFDLYRLADPEELEFMG 99 (158)
T ss_dssp EEEECTTCSCTTHHHHST
T ss_pred eccccccCCcHHHHHHcC
Confidence 999999889999994 45
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=3e-15 Score=173.51 Aligned_cols=129 Identities=13% Similarity=0.143 Sum_probs=90.6
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCC----CHHHHhhhceEEe---------c
Q 041277 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKL----QLKWLRSQMGLVS---------Q 444 (1133)
Q Consensus 378 ~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~----~~~~~r~~i~~v~---------Q 444 (1133)
+|+++ + .++|++++|+|||||||||++++|+|+++|++|+|.+.|.++... +...+++++++.+ |
T Consensus 158 ~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq 235 (418)
T 1p9r_A 158 NFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQ 235 (418)
T ss_dssp HHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGG
T ss_pred HHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhcc
Confidence 45555 4 378999999999999999999999999999999999998877321 1123445666655 9
Q ss_pred CCCCc--c-----ccHHHHHhcCCC---------CCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHH
Q 041277 445 EPALF--A-----TSIKENILFGKE---------DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRI 508 (1133)
Q Consensus 445 ~~~l~--~-----~ti~eni~~~~~---------~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 508 (1133)
+|.++ . .|+++|+.++.. ..+..+..+.+...++.++. ...+|||||+||
T Consensus 236 ~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~-------------~~~~LSgg~~QR- 301 (418)
T 1p9r_A 236 DPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL-------------ISSSLLGVLAQR- 301 (418)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH-------------HHHHEEEEEEEE-
T ss_pred CCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH-------------HHHHHHHHHHHH-
Confidence 99763 2 389999876321 11122333334444433321 124799999999
Q ss_pred HHHHHHhhCCCEEEE
Q 041277 509 AIARAIIKAPRILLL 523 (1133)
Q Consensus 509 ~iARal~~~~~illl 523 (1133)
|||+++.+|++..-
T Consensus 302 -LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 302 -LVRTLCPDCKEPYE 315 (418)
T ss_dssp -EEEEECTTTCEEEE
T ss_pred -hhhhhcCCCCccCC
Confidence 99999999998753
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.32 E-value=7.7e-14 Score=160.84 Aligned_cols=109 Identities=16% Similarity=0.245 Sum_probs=92.0
Q ss_pred cccCccEEeeC--CCEEEEEcCCCCCHHHHHHHHhhhcCCCC----CeEEE----CCcccCCCChhHHhhcccccccccc
Q 041277 1019 IFEGFSIKIEA--GKSTALVGQSGSGKSTIIGLIERFYDPLK----GDVKI----DDRDIRSYHLRSLRRHIALVSQEPT 1088 (1133)
Q Consensus 1019 vL~~isl~I~~--Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~----G~I~I----dG~dI~~i~l~~LR~~isiV~Qdp~ 1088 (1133)
+.+.|+++|++ |+++||||+||||||||+++|.|+|+|++ |+|++ +|.++ .++.+++ ++|++++|++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence 35789999999 99999999999999999999999999999 99997 46776 6677777 66999999999
Q ss_pred cccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccc
Q 041277 1089 LFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEG 1130 (1133)
Q Consensus 1089 LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G 1130 (1133)
+|++|++|||.+++. ...+..++..+...+..+++..++.+
T Consensus 235 ~~~~t~~~nl~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~ 275 (365)
T 1lw7_A 235 DYAVRHSHKIAFIDT-DFITTQAFCIQYEGKAHPFLDSMIKE 275 (365)
T ss_dssp HHHHHHCSSEEEESS-CHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHhccCCEEEEeC-CchHHHHHHHHHcCCCCHHHHHHHhh
Confidence 999999999998754 34456677777767777787777654
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.31 E-value=8.6e-14 Score=151.35 Aligned_cols=146 Identities=14% Similarity=0.173 Sum_probs=96.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHH---hccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccc-cHHHHHhcC---
Q 041277 388 AGKTVALVGGSGSGKSTVIALLQ---RFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFAT-SIKENILFG--- 460 (1133)
Q Consensus 388 ~g~~~~ivG~sGsGKSTll~~l~---~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eni~~~--- 460 (1133)
++++++|+|||||||||++++|+ |+..|+.|+|.++|.+.. ..+...+++++|++.+++. ++.+|+...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999999 999999999988775432 1244556777888776654 888888541
Q ss_pred ----------CCCCCHHHHHHHHHHhchHHHHH--hCCC--cccccccCCCCCCChHHHHHHHHHHHH-hhCCCEEEEe-
Q 041277 461 ----------KEDASMEEVIEAAKASNAHNFIR--QLPQ--QYDTQVGERGVQMSGGQKQRIAIARAI-IKAPRILLLD- 524 (1133)
Q Consensus 461 ----------~~~~~~~~~~~~~~~~~~~~~i~--~l~~--g~~t~~~~~g~~LSgGqkqri~iARal-~~~~~illlD- 524 (1133)
.+ .+.++.....+..... .+. ..|. ..+-........||| |+ ||+ +.+|++++||
T Consensus 102 ~~~~~~il~g~~-~~~~~~~~l~~~~~~~-~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~ 172 (246)
T 2bbw_A 102 RRGQHWLLDGFP-RTLGQAEALDKICEVD-LVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDD 172 (246)
T ss_dssp CTTSCEEEESCC-CSHHHHHHHHTTCCCC-EEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCT
T ss_pred cCCCeEEEECCC-CCHHHHHHHHhhcCCC-EEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccccc
Confidence 11 1222221111100000 000 0000 001111233457998 66 888 9999999999
Q ss_pred ---CcccCCChHHHHHHHHHHHHHh
Q 041277 525 ---EATSALDSESERVVQEALDKAV 546 (1133)
Q Consensus 525 ---E~ts~lD~~~~~~i~~~l~~~~ 546 (1133)
|||+++|..+++.+.+.++++.
T Consensus 173 ~~~EP~~~ld~~~~~~i~~~l~~~~ 197 (246)
T 2bbw_A 173 VTGEPLVQQEDDKPEAVAARLRQYK 197 (246)
T ss_dssp TTCCBCBCCGGGSHHHHHHHHHHHH
T ss_pred ccccccccCCCCcHHHHHHHHHHHH
Confidence 9999999999999998887764
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.30 E-value=1.2e-13 Score=138.34 Aligned_cols=87 Identities=15% Similarity=0.096 Sum_probs=71.5
Q ss_pred EEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEe
Q 041277 364 KCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVS 443 (1133)
Q Consensus 364 ~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~ 443 (1133)
+|++++|+. ..+++++||++++|++++|+||||||||||+++|+|++ |++|+|.++|.++.+. ...+ .+++
T Consensus 11 ~~~~~~~g~---~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~~---~~~~ 81 (158)
T 1htw_A 11 EFSMLRFGK---KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNIA---GKMI 81 (158)
T ss_dssp HHHHHHHHH---HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEET---TEEE
T ss_pred HHHHHHHHH---HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccCC---Ccce
Confidence 345666742 35899999999999999999999999999999999999 9999999999887521 1111 2899
Q ss_pred cCCCCccccHHHHHhc
Q 041277 444 QEPALFATSIKENILF 459 (1133)
Q Consensus 444 Q~~~l~~~ti~eni~~ 459 (1133)
|++.+|..|+.||+.+
T Consensus 82 q~~~l~~ltv~e~l~~ 97 (158)
T 1htw_A 82 YHFDLYRLADPEELEF 97 (158)
T ss_dssp EEEECTTCSCTTHHHH
T ss_pred eccccccCCcHHHHHH
Confidence 9998887799999853
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.28 E-value=1.3e-13 Score=155.66 Aligned_cols=103 Identities=18% Similarity=0.177 Sum_probs=80.3
Q ss_pred EEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhccccc
Q 041277 1004 LQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALV 1083 (1133)
Q Consensus 1004 f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV 1083 (1133)
|+||+| | .++++++||++++|+.++|+|||||||||++++|.|+++|++|.|+|+|.+ ++.+..+|++++++
T Consensus 151 ~~~v~f-y-----~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~--e~~~~~~~~~i~~~ 222 (330)
T 2pt7_A 151 YNLLDN-K-----EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE--EIVFKHHKNYTQLF 222 (330)
T ss_dssp TTTSTT-H-----HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC--CCCCSSCSSEEEEE
T ss_pred cCchhh-H-----HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee--ccccccchhEEEEE
Confidence 778888 7 248999999999999999999999999999999999999999999999986 45555578889988
Q ss_pred ccccccccccHHHHhccC---CC-----CCCCHHHHHHHHHHc
Q 041277 1084 SQEPTLFAGTIRENIAYG---AS-----DEIDESEIVEAAKAA 1118 (1133)
Q Consensus 1084 ~Qdp~LF~gTIreNI~~g---~~-----~~~sdeei~~Al~~a 1118 (1133)
+|. .-+.|.+|+.+ +| ++.+..|++++++.+
T Consensus 223 ~gg----g~~~r~~la~aL~~~p~ilildE~~~~e~~~~l~~~ 261 (330)
T 2pt7_A 223 FGG----NITSADCLKSCLRMRPDRIILGELRSSEAYDFYNVL 261 (330)
T ss_dssp CBT----TBCHHHHHHHHTTSCCSEEEECCCCSTHHHHHHHHH
T ss_pred eCC----ChhHHHHHHHHhhhCCCEEEEcCCChHHHHHHHHHH
Confidence 761 12666666422 33 244545666666554
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=7.7e-13 Score=151.99 Aligned_cols=95 Identities=22% Similarity=0.311 Sum_probs=80.6
Q ss_pred cccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCC-CCeEEECCcccCCCChhHHhhccccccc-----ccccccc
Q 041277 1019 IFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPL-KGDVKIDDRDIRSYHLRSLRRHIALVSQ-----EPTLFAG 1092 (1133)
Q Consensus 1019 vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~-~G~I~IdG~dI~~i~l~~LR~~isiV~Q-----dp~LF~g 1092 (1133)
+|++++ +++|+.++|||||||||||++++|.|+|+|+ +|+|.++|.++. + .+|+++++|+| +|..|++
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~~ 200 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFAD 200 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSHH
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHHH
Confidence 677766 8999999999999999999999999999998 899988777764 2 36889999999 9999999
Q ss_pred cHHHHhccCCCC-----CC-CHHHHHHHHHHcch
Q 041277 1093 TIRENIAYGASD-----EI-DESEIVEAAKAANA 1120 (1133)
Q Consensus 1093 TIreNI~~g~~~-----~~-sdeei~~Al~~a~l 1120 (1133)
+|++||+++ |+ +. ++++++.|++.++.
T Consensus 201 ~l~~~L~~~-pd~illdE~~d~e~~~~~l~~~~~ 233 (372)
T 2ewv_A 201 ALRAALRED-PDVIFVGEMRDLETVETALRAAET 233 (372)
T ss_dssp HHHHHTTSC-CSEEEESCCCSHHHHHHHHHHHTT
T ss_pred HHHHHhhhC-cCEEEECCCCCHHHHHHHHHHHhc
Confidence 999999985 52 22 67778888887754
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.27 E-value=2.4e-13 Score=152.65 Aligned_cols=146 Identities=17% Similarity=0.138 Sum_probs=97.1
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHH----HHhhhc--eEEecCCCCccc-cHHHHH
Q 041277 385 TIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLK----WLRSQM--GLVSQEPALFAT-SIKENI 457 (1133)
Q Consensus 385 ~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~----~~r~~i--~~v~Q~~~l~~~-ti~eni 457 (1133)
..++|++++|+|||||||||+++.|+|++.|++|+|.++|.|+...... .+++++ .+++|++.+++. +++||+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 4478999999999999999999999999999999999999998766532 234444 499999888765 899999
Q ss_pred hcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHH
Q 041277 458 LFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERV 537 (1133)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~ 537 (1133)
.++.. ... +.+ -.|| .|... .-..=.++.-.++|++..++++++||.++. .|
T Consensus 205 ~~~~~-----------~~~---d~v-----liDt-aG~~~-~~~~l~~eL~~i~ral~~de~llvLDa~t~-~~------ 256 (328)
T 3e70_C 205 QHAKA-----------RGI---DVV-----LIDT-AGRSE-TNRNLMDEMKKIARVTKPNLVIFVGDALAG-NA------ 256 (328)
T ss_dssp HHHHH-----------HTC---SEE-----EEEE-CCSCC-TTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-TH------
T ss_pred HHHHh-----------ccc---hhh-----HHhh-ccchh-HHHHHHHHHHHHHHHhcCCCCEEEEecHHH-HH------
Confidence 75410 000 000 0111 01100 001122344458999998888888885554 22
Q ss_pred HHHHHHHHh--CCCeEEEEecCc
Q 041277 538 VQEALDKAV--VGRTTIIIAHRL 558 (1133)
Q Consensus 538 i~~~l~~~~--~~~t~i~itH~~ 558 (1133)
+.+.++... .+.|.|++||--
T Consensus 257 ~~~~~~~~~~~~~it~iilTKlD 279 (328)
T 3e70_C 257 IVEQARQFNEAVKIDGIILTKLD 279 (328)
T ss_dssp HHHHHHHHHHHSCCCEEEEECGG
T ss_pred HHHHHHHHHHhcCCCEEEEeCcC
Confidence 223333332 478999999943
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.2e-12 Score=142.70 Aligned_cols=104 Identities=19% Similarity=0.244 Sum_probs=83.6
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCC-CCeEEECCcccCCCChhHHhhcc
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPL-KGDVKIDDRDIRSYHLRSLRRHI 1080 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~-~G~I~IdG~dI~~i~l~~LR~~i 1080 (1133)
++++|++|. ++|+|+| +++|+.++|+|||||||||++++|.|+++|+ +|+|.++|.|+..+. +..+
T Consensus 6 ~~l~~l~~~-------~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~ 72 (261)
T 2eyu_A 6 PEFKKLGLP-------DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKK 72 (261)
T ss_dssp CCGGGSSCC-------THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSS
T ss_pred CChHHCCCH-------HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcc
Confidence 455666542 3899999 9999999999999999999999999999998 999999999987653 4567
Q ss_pred ccccc-----ccccccccHHHHhccCCC----CCC-CHHHHHHHHHHc
Q 041277 1081 ALVSQ-----EPTLFAGTIRENIAYGAS----DEI-DESEIVEAAKAA 1118 (1133)
Q Consensus 1081 siV~Q-----dp~LF~gTIreNI~~g~~----~~~-sdeei~~Al~~a 1118 (1133)
++|+| ++..|..+|+.+|+..++ ++. +.+.++++++.+
T Consensus 73 ~~v~q~~~gl~~~~l~~~la~aL~~~p~illlDEp~D~~~~~~~l~~~ 120 (261)
T 2eyu_A 73 SIVNQREVGEDTKSFADALRAALREDPDVIFVGEMRDLETVETALRAA 120 (261)
T ss_dssp SEEEEEEBTTTBSCHHHHHHHHHHHCCSEEEESCCCSHHHHHHHHHHH
T ss_pred eeeeHHHhCCCHHHHHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHHH
Confidence 88999 777889999999988532 233 566666666654
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.27 E-value=6e-14 Score=164.84 Aligned_cols=104 Identities=15% Similarity=0.116 Sum_probs=81.7
Q ss_pred ccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCC-e-EEECCcccCCCChhHHh
Q 041277 1000 GNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKG-D-VKIDDRDIRSYHLRSLR 1077 (1133)
Q Consensus 1000 g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G-~-I~IdG~dI~~i~l~~LR 1077 (1133)
+-++++||+|+|+ ++||++++|++++|+||||||||||+++|+|++.|++| + |++|| | .|
T Consensus 117 ~mi~~~nl~~~y~---------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~--------~~ 178 (460)
T 2npi_A 117 TMKYIYNLHFMLE---------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-D--------PQ 178 (460)
T ss_dssp THHHHHHHHHHHH---------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-C--------TT
T ss_pred chhhhhhhhehhh---------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-C--------cc
Confidence 4577888888772 79999999999999999999999999999999999999 9 99998 2 37
Q ss_pred hccccccccccccc----ccHHHHhccCCC---CCCCHHHHHHHHHHcchHH
Q 041277 1078 RHIALVSQEPTLFA----GTIRENIAYGAS---DEIDESEIVEAAKAANAHD 1122 (1133)
Q Consensus 1078 ~~isiV~Qdp~LF~----gTIreNI~~g~~---~~~sdeei~~Al~~a~l~d 1122 (1133)
+++++|||++.+|. .|++||+ ++.. ....++.+.++++..++.+
T Consensus 179 ~~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~gl~~ 229 (460)
T 2npi_A 179 QPIFTVPGCISATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKNFGLER 229 (460)
T ss_dssp SCSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECCCCSSS
T ss_pred CCeeeeccchhhcccccccchhhhh-cccccccCcchHHHHHHHHHHhCCCc
Confidence 89999999997664 4899999 7532 1111233444555555544
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.4e-13 Score=158.89 Aligned_cols=98 Identities=13% Similarity=0.246 Sum_probs=84.3
Q ss_pred ccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCc---ccCCCC----
Q 041277 1000 GNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDR---DIRSYH---- 1072 (1133)
Q Consensus 1000 g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~---dI~~i~---- 1072 (1133)
+.++++||++.|++ +..+|+++ |+|++||++||+||||||||||+++|.|+++|+.|.|.++|. +++++.
T Consensus 130 ~~l~~~~v~~~~~t--g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~ 206 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT--GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENIL 206 (438)
T ss_dssp CTTTSCCCCSBCCC--SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTT
T ss_pred CceEEeccceecCC--CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhc
Confidence 46899999999963 34699999 999999999999999999999999999999999999999999 565432
Q ss_pred -hhHHhhcccccccc--cccccccHHHHhcc
Q 041277 1073 -LRSLRRHIALVSQE--PTLFAGTIRENIAY 1100 (1133)
Q Consensus 1073 -l~~LR~~isiV~Qd--p~LF~gTIreNI~~ 1100 (1133)
...+++.+++|+|+ |.+..-|+.+|+.+
T Consensus 207 ~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~ 237 (438)
T 2dpy_A 207 GPDGRARSVVIAAPADVSPLLRMQGAAYATR 237 (438)
T ss_dssp HHHHHHTEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred cccccCceEEEEECCCCCHHHHHHHHHHHHH
Confidence 45689999999994 44556799999865
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=5.7e-12 Score=145.14 Aligned_cols=147 Identities=12% Similarity=0.192 Sum_probs=95.5
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHH--HHhccCCCcc-----EEEECCeecC-CCCHHHHhhhceEEecCCCCccccHHHH
Q 041277 385 TIPAGKTVALVGGSGSGKSTVIAL--LQRFYAPLGG-----EIILDGVSID-KLQLKWLRSQMGLVSQEPALFATSIKEN 456 (1133)
Q Consensus 385 ~i~~g~~~~ivG~sGsGKSTll~~--l~~~~~~~~G-----~i~~~g~~~~-~~~~~~~r~~i~~v~Q~~~l~~~ti~en 456 (1133)
-|++|++++|+||||||||||++. +.+..+++.| .+++++.+.. ......+++++++.+| ++.+|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen 246 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN 246 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence 588999999999999999999994 4566666444 8899887631 1223334566776555 57778
Q ss_pred HhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHH--hhCCCEEEEeCcccCCChHH
Q 041277 457 ILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAI--IKAPRILLLDEATSALDSES 534 (1133)
Q Consensus 457 i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal--~~~~~illlDE~ts~lD~~~ 534 (1133)
+.+..+. ..++.. +.+.-++++ -.+|+++++|||++.+|++.
T Consensus 247 i~~~~~~-~~~~~~-----------------------------------~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~ 290 (400)
T 3lda_A 247 VAYARAY-NADHQL-----------------------------------RLLDAAAQMMSESRFSLIVVDSVMALYRTDF 290 (400)
T ss_dssp EEEEECC-SHHHHH-----------------------------------HHHHHHHHHHHHSCEEEEEEETGGGGCC---
T ss_pred EEEeccC-ChHHHH-----------------------------------HHHHHHHHHHHhcCCceEEecchhhhCchhh
Confidence 7765432 222211 112112222 24799999999999999753
Q ss_pred H------------HHHHHHHHHHh--CCCeEEEEecCc-------------------chhhc-CCEEEEEeCCe
Q 041277 535 E------------RVVQEALDKAV--VGRTTIIIAHRL-------------------STIRN-ADVIAVVQDGQ 574 (1133)
Q Consensus 535 ~------------~~i~~~l~~~~--~~~t~i~itH~~-------------------~~~~~-~d~i~~l~~G~ 574 (1133)
. ..+.+.|+++. .|.|+|+|+|.. ..+.+ +|.+++|++|+
T Consensus 291 sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 291 SGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 2 44556666653 389999999982 22344 89999998763
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.26 E-value=8.7e-12 Score=143.85 Aligned_cols=74 Identities=34% Similarity=0.394 Sum_probs=67.2
Q ss_pred CCCChHHHHHH------HHHHHHhhC-CCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEE
Q 041277 498 VQMSGGQKQRI------AIARAIIKA-PRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVV 570 (1133)
Q Consensus 498 ~~LSgGqkqri------~iARal~~~-~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 570 (1133)
..||||||||+ ++|||+..+ |+++||||||++||+.....+.+.|.++.++.++|++||+.+....||++++|
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~l 358 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINV 358 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEEE
Confidence 58999999988 668999999 99999999999999999999999998876667999999999865569999999
Q ss_pred e
Q 041277 571 Q 571 (1133)
Q Consensus 571 ~ 571 (1133)
+
T Consensus 359 ~ 359 (371)
T 3auy_A 359 K 359 (371)
T ss_dssp E
T ss_pred E
Confidence 7
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.25 E-value=1.6e-12 Score=146.53 Aligned_cols=121 Identities=16% Similarity=0.121 Sum_probs=80.0
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccC-CCccEEEEC-CeecCCCCHHHHhhhceEEecCCCCccc-cHH
Q 041277 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYA-PLGGEIILD-GVSIDKLQLKWLRSQMGLVSQEPALFAT-SIK 454 (1133)
Q Consensus 378 ~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~-~~~G~i~~~-g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-ti~ 454 (1133)
-++++++. .+|++++|+||||||||||+++|+|+.. |..|+|.++ |.+.. ...+.++++++|++.++.. +++
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv~ 279 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGVR 279 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHHH
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccHH
Confidence 47788875 4899999999999999999999999999 999999987 75542 1234579999999988865 899
Q ss_pred HHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHH
Q 041277 455 ENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAI 514 (1133)
Q Consensus 455 eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal 514 (1133)
++-. .....+++.+. ..++++.+ |+....+....+|| ||+||++||+++
T Consensus 280 e~~l---~~l~~~e~~~~-----~~e~l~~~--gl~~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 280 EFGL---WHLEPEQITQG-----FVEFHDYL--GHCKYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp TCCC---CCCCHHHHHHT-----SGGGGGGT--TCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred Hhhh---cCCCHHHHHHH-----HHHHHHHc--CCchhcCCCcccCC-HHHHHHHHHhcC
Confidence 8632 23344443221 12222222 23333444556899 999999999875
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.24 E-value=3.4e-14 Score=169.12 Aligned_cols=174 Identities=14% Similarity=0.147 Sum_probs=115.2
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCcc-ccHHH
Q 041277 377 IIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFA-TSIKE 455 (1133)
Q Consensus 377 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~-~ti~e 455 (1133)
.+++++++.+++|+.++|+|||||||||++++|+|+++|++|.|.++|.+--..+. +..++++.|...... .|..+
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~---~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYH---ENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCC---SSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCC---CCeEEEEeecccccCCcCHHH
Confidence 46889999999999999999999999999999999999999999999865222211 345777777665222 27777
Q ss_pred HHhcC---CC------CCCHHHHHHHHHHhc-------------hHHHHHhC---CCccccccc-------CCCCCCChH
Q 041277 456 NILFG---KE------DASMEEVIEAAKASN-------------AHNFIRQL---PQQYDTQVG-------ERGVQMSGG 503 (1133)
Q Consensus 456 ni~~~---~~------~~~~~~~~~~~~~~~-------------~~~~i~~l---~~g~~t~~~-------~~g~~LSgG 503 (1133)
++... .| +.+..+...+.+.+. +.+.+.++ |.+....+. .....+|||
T Consensus 325 ~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G 404 (511)
T 2oap_1 325 LLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGN 404 (511)
T ss_dssp HHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSS
T ss_pred HHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCC
Confidence 76432 12 233344444443322 22333332 222221111 123357999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEE--EecCcchhhc-CC
Q 041277 504 QKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTII--IAHRLSTIRN-AD 565 (1133)
Q Consensus 504 qkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~--itH~~~~~~~-~d 565 (1133)
||||.++|. + | |++||+.+.+.+.+.+.++. .++|+++ +||+++.+.. |+
T Consensus 405 ~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 405 TRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp CEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred CceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence 999987751 1 6 99999987776666665553 4788875 8999998764 53
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.22 E-value=8.3e-12 Score=143.47 Aligned_cols=138 Identities=20% Similarity=0.244 Sum_probs=79.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHh-ccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCc-cccHHHHHhcCCCCCCHHH
Q 041277 391 TVALVGGSGSGKSTVIALLQR-FYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALF-ATSIKENILFGKEDASMEE 468 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~-~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~-~~ti~eni~~~~~~~~~~~ 468 (1133)
.+.|+||+|+||||++++++| ++.|+.|++.++|.+...... .+..+++++|++++. +.+- .+. .....
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~ 108 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN--RKLELNVVSSPYHLEITPSD-----MGN--NDRIV 108 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECCC-----------CCHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc--ccceeeeecccceEEecHhh-----cCC--cchHH
Confidence 389999999999999999999 899999999999987654322 256799999988652 1110 011 11112
Q ss_pred HHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCC
Q 041277 469 VIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVG 548 (1133)
Q Consensus 469 ~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~ 548 (1133)
+.+..+. +.... +++..+ +||| +..+|+++|+|||++ ||+.+...+.+.+.+..++
T Consensus 109 ~~~~i~~-----~~~~~--~~~~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~ 164 (354)
T 1sxj_E 109 IQELLKE-----VAQME--QVDFQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKN 164 (354)
T ss_dssp HHHHHHH-----HTTTT--C----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTT
T ss_pred HHHHHHH-----HHHhc--cccccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCC
Confidence 2222211 11111 111111 4666 778999999999999 9999999999999887778
Q ss_pred CeEEEEecCcchh
Q 041277 549 RTTIIIAHRLSTI 561 (1133)
Q Consensus 549 ~t~i~itH~~~~~ 561 (1133)
.++|++||+++.+
T Consensus 165 ~~~Il~t~~~~~l 177 (354)
T 1sxj_E 165 IRLIMVCDSMSPI 177 (354)
T ss_dssp EEEEEEESCSCSS
T ss_pred CEEEEEeCCHHHH
Confidence 8999999998643
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=3.7e-14 Score=156.31 Aligned_cols=143 Identities=19% Similarity=0.174 Sum_probs=102.9
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCC-CCcc-ccHH
Q 041277 377 IIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEP-ALFA-TSIK 454 (1133)
Q Consensus 377 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~-~l~~-~ti~ 454 (1133)
.+++++++++++| ++|+||||||||||+++|+|.+.+ |.|.++|.++........++++++++|++ ..++ -++.
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~ 109 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF 109 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence 3789999999999 999999999999999999999887 79999999887666666677899999986 3443 3677
Q ss_pred HHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccC-----
Q 041277 455 ENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSA----- 529 (1133)
Q Consensus 455 eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~----- 529 (1133)
||+....+.....+. . ...+...+++ ..|||||+||+.+++|+..+|++| |||+.-
T Consensus 110 Deid~~~~~r~~~~~-~-----~~~~~~~~~l-----------~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd 170 (274)
T 2x8a_A 110 DEVDALCPRRSDRET-G-----ASVRVVNQLL-----------TEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLD 170 (274)
T ss_dssp ETCTTTCC---------------CTTHHHHHH-----------HHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSC
T ss_pred ehhhhhhcccCCCcc-h-----HHHHHHHHHH-----------HhhhcccccCCEEEEeecCChhhC--CHhhcCcccCC
Confidence 887654332111110 0 0111122222 368999999999999999999975 999752
Q ss_pred -------CChHHHHHHHHHH
Q 041277 530 -------LDSESERVVQEAL 542 (1133)
Q Consensus 530 -------lD~~~~~~i~~~l 542 (1133)
-|.+.+..|.+.+
T Consensus 171 ~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 171 KTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp EEEECCSCCHHHHHHHHHHH
T ss_pred eEEEeCCcCHHHHHHHHHHH
Confidence 2555555565544
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=3.1e-12 Score=140.19 Aligned_cols=82 Identities=22% Similarity=0.170 Sum_probs=49.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcccccccccccccc-cHHHHhccCCCC--CCCH
Q 041277 1032 STALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAG-TIRENIAYGASD--EIDE 1108 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~g-TIreNI~~g~~~--~~sd 1108 (1133)
++|||||||||||||+++|+|+..|++|+|.++|.++.. ...|+.+++|+|++.++.. |+.||+.||... ....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 589999999999999999999999999999999998743 3457899999999998866 999999998631 1122
Q ss_pred HHHHHHHH
Q 041277 1109 SEIVEAAK 1116 (1133)
Q Consensus 1109 eei~~Al~ 1116 (1133)
+.+.+.++
T Consensus 81 ~~i~~~~~ 88 (270)
T 3sop_A 81 EPIEKYIN 88 (270)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34555554
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.9e-11 Score=121.32 Aligned_cols=91 Identities=15% Similarity=0.255 Sum_probs=69.2
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCcc--EEEECCeecCCCCHHHHhhhceEEecCCCCccccHHH
Q 041277 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGG--EIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKE 455 (1133)
Q Consensus 378 ~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G--~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~e 455 (1133)
+|+++ +|+.++|+||+|||||||++++++.+.+ +| .+++++.++...
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~------------------------- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT------------------------- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC-------------------------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH-------------------------
Confidence 45666 8999999999999999999999999987 46 555554332110
Q ss_pred HHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHH
Q 041277 456 NILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESE 535 (1133)
Q Consensus 456 ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~ 535 (1133)
+++.+|++|++|||++ +|...+
T Consensus 79 ---------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~~ 100 (149)
T 2kjq_A 79 ---------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQ 100 (149)
T ss_dssp ---------------------------------------------------------GGGGGCSEEEEESTTC-CCSHHH
T ss_pred ---------------------------------------------------------HHHhCCCEEEEeCccc-cChHHH
Confidence 2356899999999998 666667
Q ss_pred HHHHHHHHHHh-CCCe-EEEEecC
Q 041277 536 RVVQEALDKAV-VGRT-TIIIAHR 557 (1133)
Q Consensus 536 ~~i~~~l~~~~-~~~t-~i~itH~ 557 (1133)
+.+.+.+.... +|++ +|++||+
T Consensus 101 ~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 101 ALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEESS
T ss_pred HHHHHHHHHHHHcCCcEEEEECCC
Confidence 78888887754 4788 7777775
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.18 E-value=4.5e-12 Score=141.02 Aligned_cols=81 Identities=19% Similarity=0.216 Sum_probs=68.4
Q ss_pred cCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCC----hhHH--hhcccccccccc-cc-cc
Q 041277 1021 EGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYH----LRSL--RRHIALVSQEPT-LF-AG 1092 (1133)
Q Consensus 1021 ~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~----l~~L--R~~isiV~Qdp~-LF-~g 1092 (1133)
+++||++++|+.++|||||||||||+++.|.+++.|++|+|.++|.|+.... +..+ |.++++|+|++. ++ ..
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~ 170 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 170 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHH
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHH
Confidence 5688999999999999999999999999999999999999999999987653 2344 458999999997 65 45
Q ss_pred cHHHHhccC
Q 041277 1093 TIRENIAYG 1101 (1133)
Q Consensus 1093 TIreNI~~g 1101 (1133)
|++||+.++
T Consensus 171 ~v~e~l~~~ 179 (302)
T 3b9q_A 171 VLSKAVKRG 179 (302)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 899999753
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=7.9e-12 Score=128.81 Aligned_cols=111 Identities=17% Similarity=0.156 Sum_probs=75.8
Q ss_pred eEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCC
Q 041277 383 CLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKE 462 (1133)
Q Consensus 383 ~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~ 462 (1133)
+|++++|+.++|+||+|+|||||++++++.+.|.+|.. +.|+ +..+.
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~------------------~~~~---------~~~~~------ 78 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR------------------GYFF---------DTKDL------ 78 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC------------------CCEE---------EHHHH------
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe------------------EEEE---------EHHHH------
Confidence 56788899999999999999999999999987766631 1111 11111
Q ss_pred CCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCccc-CCChHHHHHHHHH
Q 041277 463 DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATS-ALDSESERVVQEA 541 (1133)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts-~lD~~~~~~i~~~ 541 (1133)
.+.... .... + ... -+...+.+|++|+||||++ ++|+.....+.+.
T Consensus 79 -------~~~~~~-----~~~~---~----------~~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~l 125 (180)
T 3ec2_A 79 -------IFRLKH-----LMDE---G----------KDT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYI 125 (180)
T ss_dssp -------HHHHHH-----HHHH---T----------CCS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHH
T ss_pred -------HHHHHH-----HhcC---c----------hHH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHH
Confidence 111100 0000 0 000 1122355999999999996 8999999999998
Q ss_pred HHHHh-CCCeEEEEecCcc
Q 041277 542 LDKAV-VGRTTIIIAHRLS 559 (1133)
Q Consensus 542 l~~~~-~~~t~i~itH~~~ 559 (1133)
+.... +++++|++||...
T Consensus 126 l~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 126 ITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HHHHHHTTCEEEEECCCCS
T ss_pred HHHHHHcCCCEEEEcCCCh
Confidence 87764 6899999999864
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=2.6e-12 Score=148.12 Aligned_cols=92 Identities=16% Similarity=0.213 Sum_probs=75.5
Q ss_pred ccccCccEEeeCCC--------------------EEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHh
Q 041277 1018 MIFEGFSIKIEAGK--------------------STALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLR 1077 (1133)
Q Consensus 1018 ~vL~~isl~I~~Ge--------------------~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR 1077 (1133)
.+|+||||+|++|+ .+||+||||||||||+++|.|+++|++|+|.++|.++. |
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t-------~ 109 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-------M 109 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------C
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------e
Confidence 48999999999999 99999999999999999999999999999999998763 2
Q ss_pred hcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHH
Q 041277 1078 RHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHD 1122 (1133)
Q Consensus 1078 ~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~d 1122 (1133)
.++|+|++...+-|++||+.++.+ ++.+.++++..++.+
T Consensus 110 --~~~v~q~~~~~~ltv~D~~g~~~~----~~~~~~~L~~~~L~~ 148 (413)
T 1tq4_A 110 --ERHPYKHPNIPNVVFWDLPGIGST----NFPPDTYLEKMKFYE 148 (413)
T ss_dssp --CCEEEECSSCTTEEEEECCCGGGS----SCCHHHHHHHTTGGG
T ss_pred --eEEeccccccCCeeehHhhcccch----HHHHHHHHHHcCCCc
Confidence 288999986567899999988743 224667777777654
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.15 E-value=2.4e-12 Score=143.73 Aligned_cols=115 Identities=17% Similarity=0.115 Sum_probs=80.4
Q ss_pred EEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEE---CCeecCCCCHHHHh-hhceEEecCCCCc------cccH
Q 041277 384 LTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIIL---DGVSIDKLQLKWLR-SQMGLVSQEPALF------ATSI 453 (1133)
Q Consensus 384 l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~---~g~~~~~~~~~~~r-~~i~~v~Q~~~l~------~~ti 453 (1133)
+++.+|++++++||||||||||+|+|. +.+|+.|+|.+ +|.++..... ..+ +.+|||+|+|.+. ..|+
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~-~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR-LIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE-EEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE-EEEcCCCcEEEECcCcCcCcccccCCH
Confidence 355689999999999999999999999 99999999999 9988765432 222 3699999999652 3478
Q ss_pred HHHH--hcC--------C----C-CCCHHHHHHHHHHhchHH-HHHhCCCcccccccCCCCCCChHHHHHHHHHH
Q 041277 454 KENI--LFG--------K----E-DASMEEVIEAAKASNAHN-FIRQLPQQYDTQVGERGVQMSGGQKQRIAIAR 512 (1133)
Q Consensus 454 ~eni--~~~--------~----~-~~~~~~~~~~~~~~~~~~-~i~~l~~g~~t~~~~~g~~LSgGqkqri~iAR 512 (1133)
||+ .|+ . + ......+.++++..++.+ ..++.| ..|||.+++++.|||
T Consensus 238 -e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----------~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 -REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL-----------KIIKVYLEEIKELCR 300 (302)
T ss_dssp -GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----------HHTTCCCTTHHHHSS
T ss_pred -HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----------HHHHHHHHHHHHHhc
Confidence 888 453 0 1 112345777777777754 444444 368998899999987
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.5e-11 Score=139.19 Aligned_cols=81 Identities=19% Similarity=0.216 Sum_probs=69.3
Q ss_pred cCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCC----hhHH--hhcccccccccc-cc-cc
Q 041277 1021 EGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYH----LRSL--RRHIALVSQEPT-LF-AG 1092 (1133)
Q Consensus 1021 ~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~----l~~L--R~~isiV~Qdp~-LF-~g 1092 (1133)
+.+||++++|+.++|||||||||||+++.|.+++.|++|+|.++|.|+.... +..+ |.++++|+|++. ++ ..
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 3578899999999999999999999999999999999999999999986643 2344 568999999987 54 56
Q ss_pred cHHHHhccC
Q 041277 1093 TIRENIAYG 1101 (1133)
Q Consensus 1093 TIreNI~~g 1101 (1133)
|++||+.++
T Consensus 228 tv~e~l~~~ 236 (359)
T 2og2_A 228 VLSKAVKRG 236 (359)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 899999753
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.10 E-value=7.4e-12 Score=132.16 Aligned_cols=74 Identities=16% Similarity=0.183 Sum_probs=49.2
Q ss_pred ccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCC-hhHHhhcccccccccccccc-cHH
Q 041277 1018 MIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYH-LRSLRRHIALVSQEPTLFAG-TIR 1095 (1133)
Q Consensus 1018 ~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~-l~~LR~~isiV~Qdp~LF~g-TIr 1095 (1133)
+||+| .+|++||.+||+||||||||||+++|.|+++ .|.+++ ++...+ ....|+.+++++|++.+|.. |++
T Consensus 10 ~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~----~i~~~~-~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 10 PTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP----NLHFSV-SATTRAPRPGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp -----------CCCEEEEECSTTSSHHHHHHHHHHHST----TCEECC-CEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred cCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC----ceEEcc-cccccCCcccccCCCeeEecCHHHHHHHHhc
Confidence 58899 7999999999999999999999999999995 355554 222211 12346789999999988764 455
Q ss_pred HHh
Q 041277 1096 ENI 1098 (1133)
Q Consensus 1096 eNI 1098 (1133)
+|+
T Consensus 83 ~~l 85 (207)
T 1znw_A 83 GEL 85 (207)
T ss_dssp TCE
T ss_pred CCc
Confidence 555
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.09 E-value=5.9e-12 Score=144.76 Aligned_cols=89 Identities=17% Similarity=0.203 Sum_probs=64.8
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCE--EEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhh
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKS--TALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRR 1078 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~--vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~ 1078 (1133)
.+++++ +++|++ .+ |+|+||++++|+. +|||||||||||||+++|+|+. ++|.++...+....|+
T Consensus 16 ~l~~~~-~~~y~~---~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~ 82 (427)
T 2qag_B 16 TVPLAG-HVGFDS---LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQ 82 (427)
T ss_dssp -CCCCC-CC-CC-----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEE
T ss_pred eEEEee-EEEECC---ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEe
Confidence 456666 788853 34 8999999999999 9999999999999999999983 5677776655555678
Q ss_pred cccccccccccc-cccHHHHhccCC
Q 041277 1079 HIALVSQEPTLF-AGTIRENIAYGA 1102 (1133)
Q Consensus 1079 ~isiV~Qdp~LF-~gTIreNI~~g~ 1102 (1133)
.+++|+|++.++ .-|+.||+.+|.
T Consensus 83 ~i~~v~Q~~~l~~~ltv~D~~~~g~ 107 (427)
T 2qag_B 83 SNTYDLQESNVRLKLTIVSTVGFGD 107 (427)
T ss_dssp EEEEEEEC--CEEEEEEEEEECCCC
T ss_pred eEEEEeecCccccccchhhhhhhhh
Confidence 999999999887 569999999885
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.09 E-value=2e-11 Score=141.90 Aligned_cols=81 Identities=25% Similarity=0.306 Sum_probs=69.7
Q ss_pred cCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCC----hhH--Hhhcccccccccccc-ccc
Q 041277 1021 EGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYH----LRS--LRRHIALVSQEPTLF-AGT 1093 (1133)
Q Consensus 1021 ~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~----l~~--LR~~isiV~Qdp~LF-~gT 1093 (1133)
+++||++++|+.++|||+|||||||+++.|.+++.|++|+|.++|.|+.... +.. .|+++++|+|++.++ ..|
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~t 363 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASV 363 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHH
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHH
Confidence 5788999999999999999999999999999999999999999988875431 233 478899999998755 678
Q ss_pred HHHHhccC
Q 041277 1094 IRENIAYG 1101 (1133)
Q Consensus 1094 IreNI~~g 1101 (1133)
+++||.++
T Consensus 364 V~e~l~~a 371 (503)
T 2yhs_A 364 IFDAIQAA 371 (503)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999865
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.6e-11 Score=133.71 Aligned_cols=101 Identities=17% Similarity=0.142 Sum_probs=80.5
Q ss_pred CccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHh---hhcCCCCCeEE--------ECCccc-CCCChhHHhhcccccc
Q 041277 1017 VMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIE---RFYDPLKGDVK--------IDDRDI-RSYHLRSLRRHIALVS 1084 (1133)
Q Consensus 1017 ~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~---R~ydp~~G~I~--------IdG~dI-~~i~l~~LR~~isiV~ 1084 (1133)
..++++.+ ++|++|||+||+||||||++++|. |++.|++|.|. .+|.++ ....+..+++++++++
T Consensus 17 ~~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 93 (252)
T 4e22_A 17 RLERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRF 93 (252)
T ss_dssp ------CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEE
T ss_pred hhhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEE
Confidence 34555554 899999999999999999999999 99999999999 999999 4667889999999999
Q ss_pred cc------cccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcc
Q 041277 1085 QE------PTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLN 1128 (1133)
Q Consensus 1085 Qd------p~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP 1128 (1133)
|+ .+++..++.+||+ .+++.+++..+..++.|.+..
T Consensus 94 ~~~~~~~~~~l~~~~v~~~i~--------~~~v~~~~s~~~~~~~vr~~l 135 (252)
T 4e22_A 94 VSQNGQLQVILEGEDVSNEIR--------TETVGNTASQAAAFPRVREAL 135 (252)
T ss_dssp EEETTEEEEEETTEECTTGGG--------SHHHHHHHHHHTTSHHHHHHH
T ss_pred ecCCCCceEEECCeehhHHHH--------HHHHHHHHHHhcccHHHHHHH
Confidence 54 5688889999984 236777777777777775543
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.09 E-value=5.8e-12 Score=132.30 Aligned_cols=62 Identities=10% Similarity=0.054 Sum_probs=50.7
Q ss_pred ccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhccccccccc
Q 041277 1018 MIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEP 1087 (1133)
Q Consensus 1018 ~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp 1087 (1133)
.+|+|| ++||.+||+||||||||||+++|.|+ +|++|+|. +.++.. +...+|+++++|||+|
T Consensus 14 ~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~~-~~~~~~~~ig~v~q~~ 75 (208)
T 3b85_A 14 HYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILTR-PAVEAGEKLGFLPGTL 75 (208)
T ss_dssp HHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEEE-CSCCTTCCCCSSCC--
T ss_pred HHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEecC-CchhhhcceEEecCCH
Confidence 588985 89999999999999999999999999 99999994 334432 3335688999999998
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=4.6e-11 Score=129.55 Aligned_cols=71 Identities=18% Similarity=0.176 Sum_probs=50.9
Q ss_pred CCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcccccccccccccccHH
Q 041277 1016 DVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIR 1095 (1133)
Q Consensus 1016 ~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIr 1095 (1133)
+.++|+|+||++++|+.+||+||+||||||++++|.+++ |.+.+| ..++.+++|+||++...-|.+
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~~ 76 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTAE 76 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCHH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCHh
Confidence 446899999999999999999999999999999999987 666665 368899999999855456899
Q ss_pred HHhcc
Q 041277 1096 ENIAY 1100 (1133)
Q Consensus 1096 eNI~~ 1100 (1133)
+|+++
T Consensus 77 ~~~~~ 81 (245)
T 2jeo_A 77 QKAKA 81 (245)
T ss_dssp HHHHH
T ss_pred Hhhhh
Confidence 98764
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=6.8e-12 Score=140.81 Aligned_cols=92 Identities=14% Similarity=0.201 Sum_probs=78.5
Q ss_pred cccEEEEeEEEECCCCCCCccccCccEEe-------------------eCCCEEEEEcCCCCCHHHHHHHHhhhcC--CC
Q 041277 999 TGNIELQNVHFAYPARPDVMIFEGFSIKI-------------------EAGKSTALVGQSGSGKSTIIGLIERFYD--PL 1057 (1133)
Q Consensus 999 ~g~I~f~nVsF~Y~~~~~~~vL~~isl~I-------------------~~Ge~vaIVG~SGSGKSTL~~LL~R~yd--p~ 1057 (1133)
.+.|+++||++.|. ++++++++++ ++|+.+||+|+|||||||++++|.+++. |+
T Consensus 35 ~~~i~~~~v~~~y~-----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~ 109 (308)
T 1sq5_A 35 NEDLSLEEVAEIYL-----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPE 109 (308)
T ss_dssp CTTCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT
T ss_pred ccccchHhHHHHHH-----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC
Confidence 46799999999992 4899999998 9999999999999999999999999999 99
Q ss_pred CCeEEE---CCcccCCCChhHHhhcccccccccccc-cccHHHHhcc
Q 041277 1058 KGDVKI---DDRDIRSYHLRSLRRHIALVSQEPTLF-AGTIRENIAY 1100 (1133)
Q Consensus 1058 ~G~I~I---dG~dI~~i~l~~LR~~isiV~Qdp~LF-~gTIreNI~~ 1100 (1133)
+|+|.+ ||.+.. ...|+.+++| |+..++ +-|+.+|+.+
T Consensus 110 ~G~i~vi~~d~~~~~----~~~~~~~~~v-q~~~~~~~~~~~~~~~~ 151 (308)
T 1sq5_A 110 HRRVELITTDGFLHP----NQVLKERGLM-KKKGFPESYDMHRLVKF 151 (308)
T ss_dssp CCCEEEEEGGGGBCC----HHHHHHHTCT-TCTTSGGGBCHHHHHHH
T ss_pred CCeEEEEecCCccCc----HHHHHhCCEe-ecCCCCCCccHHHHHHH
Confidence 999999 998852 3457889999 776554 4478888754
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=2.3e-12 Score=146.07 Aligned_cols=87 Identities=15% Similarity=0.149 Sum_probs=74.8
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCC----hhHHh
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYH----LRSLR 1077 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~----l~~LR 1077 (1133)
|+.+|++++|. ...+|+++||++++|+.+||+|++|||||||++.|.+++.|++|+|.|.|.|+.... ....|
T Consensus 30 ie~~~~~~~~~---~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~ 106 (337)
T 2qm8_A 30 AESRRADHRAA---VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDK 106 (337)
T ss_dssp HTCSSHHHHHH---HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCG
T ss_pred HeeCCcccccC---hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHh
Confidence 45566777774 235899999999999999999999999999999999999999999999999986543 23468
Q ss_pred hccccccccccccc
Q 041277 1078 RHIALVSQEPTLFA 1091 (1133)
Q Consensus 1078 ~~isiV~Qdp~LF~ 1091 (1133)
+++++|+|+|.+|.
T Consensus 107 ~~i~~v~q~~~~~~ 120 (337)
T 2qm8_A 107 TRMARLAIDRNAFI 120 (337)
T ss_dssp GGSTTGGGCTTEEE
T ss_pred hhheeeccCccccc
Confidence 89999999999985
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=99.03 E-value=4.1e-13 Score=144.52 Aligned_cols=39 Identities=23% Similarity=0.156 Sum_probs=23.3
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHH-hccCC
Q 041277 377 IIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQ-RFYAP 415 (1133)
Q Consensus 377 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~-~~~~~ 415 (1133)
...+++||++++|++++|+||||||||||+++|+ |++++
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 3578999999999999999999999999999999 99843
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.03 E-value=6e-11 Score=132.51 Aligned_cols=104 Identities=16% Similarity=0.125 Sum_probs=71.6
Q ss_pred EEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEE---CCcccCCCChhHHhhcccccccccc-------------
Q 041277 1025 IKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKI---DDRDIRSYHLRSLRRHIALVSQEPT------------- 1088 (1133)
Q Consensus 1025 l~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~I---dG~dI~~i~l~~LR~~isiV~Qdp~------------- 1088 (1133)
|++.+|+.++|+||||||||||+++|.++..|++|+|.+ +|.++........++++++|+|+|-
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 567789999999999999999999999999999999999 9999876542221247999999985
Q ss_pred ---ccc-ccHHHHhccCCC--CCCCHHHHHHHHHHcch-HHHHhhccc
Q 041277 1089 ---LFA-GTIRENIAYGAS--DEIDESEIVEAAKAANA-HDFIAGLNE 1129 (1133)
Q Consensus 1089 ---LF~-gTIreNI~~g~~--~~~sdeei~~Al~~a~l-~dfI~~LP~ 1129 (1133)
||. -|+ +|++++.. ..-.++.+.++++..++ .+...+.|.
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~ 290 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVK 290 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHH
Confidence 343 377 99988531 11234579999999999 477666664
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.00 E-value=5.9e-11 Score=132.59 Aligned_cols=103 Identities=18% Similarity=0.152 Sum_probs=70.0
Q ss_pred EEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEE---CCeecCCCCHHHHhhhceEEecCCC-------------
Q 041277 384 LTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIIL---DGVSIDKLQLKWLRSQMGLVSQEPA------------- 447 (1133)
Q Consensus 384 l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~---~g~~~~~~~~~~~r~~i~~v~Q~~~------------- 447 (1133)
|++.+|++++|+||||||||||+++|+|+.+|++|+|.+ +|.++.........+.+|+|+|+|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 566789999999999999999999999999999999999 9988866542111246999999985
Q ss_pred ---Cccc-cHHHHHhcCCC---CCCHHHHHHHHHHhch-HHHHHhCCC
Q 041277 448 ---LFAT-SIKENILFGKE---DASMEEVIEAAKASNA-HNFIRQLPQ 487 (1133)
Q Consensus 448 ---l~~~-ti~eni~~~~~---~~~~~~~~~~~~~~~~-~~~i~~l~~ 487 (1133)
+|+. |+ +|+.|+.. .....++.++++..++ .+..++.|.
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~ 290 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVK 290 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHH
Confidence 3544 78 99988531 1234568888888888 466666663
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=98.99 E-value=2.3e-10 Score=127.27 Aligned_cols=73 Identities=22% Similarity=0.292 Sum_probs=62.5
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCC----hhHH--hhccccccccccccc-ccHHHHhcc
Q 041277 1028 EAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYH----LRSL--RRHIALVSQEPTLFA-GTIRENIAY 1100 (1133)
Q Consensus 1028 ~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~----l~~L--R~~isiV~Qdp~LF~-gTIreNI~~ 1100 (1133)
.+|+.++|||||||||||+++.|.+++.|++|+|.++|.|+.... +..+ |.++++|+|++.++. .|+++|+.+
T Consensus 100 ~~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~ 179 (304)
T 1rj9_A 100 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQA 179 (304)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHH
Confidence 368999999999999999999999999999999999999987654 2333 467999999998775 478888864
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=98.97 E-value=6.2e-11 Score=137.09 Aligned_cols=154 Identities=17% Similarity=0.202 Sum_probs=90.8
Q ss_pred ccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHh
Q 041277 379 FKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENIL 458 (1133)
Q Consensus 379 l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~ 458 (1133)
-++++|+++.|+.++|+|+||||||||++.|++..+ .+.+.+...+ ...+++|.|+.. ...++.|+.-
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftTl-----~p~~G~V~~~~~-~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTTL-----SPNLGVVEVSEE-ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCSS-----CCEEEEEECSSS-CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCccccee-----cceeeEEEecCc-ceEEEEeccc
Confidence 478999999999999999999999999999999743 3444443332 235677776541 0112222211
Q ss_pred cCC-----CCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChH
Q 041277 459 FGK-----EDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSE 533 (1133)
Q Consensus 459 ~~~-----~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~ 533 (1133)
+.. ...... ..+..+.+. ..+.. +|-. .+...+||+||+||+++||+|..+|.|+++ +.+|..
T Consensus 215 li~~a~~~~~L~~~-fl~~~era~--~lL~v----vDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGLE-FLRHIARTR--VLLYV----LDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCHH-HHHHHTSSS--EEEEE----EETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhHH-HHHHHHHHH--hhhEE----eCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 100 001111 111111110 00110 1100 122346999999999999999999999999 999997
Q ss_pred HHHHHHHHHHHHh-CCCeEEEEec
Q 041277 534 SERVVQEALDKAV-VGRTTIIIAH 556 (1133)
Q Consensus 534 ~~~~i~~~l~~~~-~~~t~i~itH 556 (1133)
.+..+.+..+... .+.+++.+|.
T Consensus 283 ~~~~~~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 283 EEEAVKALADALAREGLAVLPVSA 306 (416)
T ss_dssp CHHHHHHHHHHHHTTTSCEEECCT
T ss_pred hHHHHHHHHHHHHhcCCeEEEEEC
Confidence 6633333333332 3667776654
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=2.7e-11 Score=135.92 Aligned_cols=140 Identities=17% Similarity=0.189 Sum_probs=97.5
Q ss_pred cccEEEEEEEEEcCCCCCCccccceeEEe-------------------eCCCEEEEEcCCCCcHHHHHHHHHhccC--CC
Q 041277 358 LGEVEFKCVQFAYPSRPESIIFKDFCLTI-------------------PAGKTVALVGGSGSGKSTVIALLQRFYA--PL 416 (1133)
Q Consensus 358 ~~~i~~~~v~~~y~~~~~~~~l~~i~l~i-------------------~~g~~~~ivG~sGsGKSTll~~l~~~~~--~~ 416 (1133)
.+.|+++||++.|. ++++++++.+ ++|+++||+||||||||||+++|.|++. |+
T Consensus 35 ~~~i~~~~v~~~y~-----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~ 109 (308)
T 1sq5_A 35 NEDLSLEEVAEIYL-----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPE 109 (308)
T ss_dssp CTTCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT
T ss_pred ccccchHhHHHHHH-----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC
Confidence 45799999999993 4899999988 8999999999999999999999999999 99
Q ss_pred ccEEEE---CCeecCCCCHHHHhhhceEEecCCCCcc-ccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCccccc
Q 041277 417 GGEIIL---DGVSIDKLQLKWLRSQMGLVSQEPALFA-TSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQ 492 (1133)
Q Consensus 417 ~G~i~~---~g~~~~~~~~~~~r~~i~~v~Q~~~l~~-~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~ 492 (1133)
+|+|.+ ||.+.. . ..++.++++ |+..++. .|+.+|+.+... ...-.+ -...|. ++.
T Consensus 110 ~G~i~vi~~d~~~~~---~-~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~------------l~~~~~-~i~~P~-~~~- 169 (308)
T 1sq5_A 110 HRRVELITTDGFLHP---N-QVLKERGLM-KKKGFPESYDMHRLVKFVSD------------LKSGVP-NVTAPV-YSH- 169 (308)
T ss_dssp CCCEEEEEGGGGBCC---H-HHHHHHTCT-TCTTSGGGBCHHHHHHHHHH------------HTTTCS-CEEECC-EET-
T ss_pred CCeEEEEecCCccCc---H-HHHHhCCEe-ecCCCCCCccHHHHHHHHHH------------HhCCCC-ceeccc-ccc-
Confidence 999999 887642 2 345678999 7766543 378887764210 000000 001221 221
Q ss_pred ccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCCh
Q 041277 493 VGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDS 532 (1133)
Q Consensus 493 ~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~ 532 (1133)
+.+ +|+..+.+.+.+|+++|+|.|....|.
T Consensus 170 --------~~~--~~~~~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 170 --------LIY--DVIPDGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp --------TTT--EECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred --------ccc--CcccccceecCCCCEEEECchhhCCCc
Confidence 111 233323345567899999999988774
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=1.9e-10 Score=121.74 Aligned_cols=78 Identities=19% Similarity=0.195 Sum_probs=60.9
Q ss_pred eeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcccccccccccccc---cHHHHhc--cC
Q 041277 1027 IEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAG---TIRENIA--YG 1101 (1133)
Q Consensus 1027 I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~g---TIreNI~--~g 1101 (1133)
.++|+.+||+|+|||||||++++|.+++.| ++++|+||+++|+. |+++|+. ++
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 579999999999999999999999999975 68999999999864 4666654 44
Q ss_pred CCCCCCHHHHHHHHHHcchHHHHhh
Q 041277 1102 ASDEIDESEIVEAAKAANAHDFIAG 1126 (1133)
Q Consensus 1102 ~~~~~sdeei~~Al~~a~l~dfI~~ 1126 (1133)
.|...+.+.+.++++..++.+++..
T Consensus 61 ~~~~~~~~~~~~~l~~~~~~~~~~~ 85 (211)
T 3asz_A 61 HPDAFDLALYLEHAQALLRGLPVEM 85 (211)
T ss_dssp SGGGBCHHHHHHHHHHHHTTCCEEE
T ss_pred ChhhhhHHHHHHHHHHHHcCCCcCC
Confidence 4444556788888888877766543
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=98.94 E-value=2.9e-11 Score=147.76 Aligned_cols=96 Identities=16% Similarity=0.189 Sum_probs=59.6
Q ss_pred cEEEEeEEEECCCCCCCccccCc----------cEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCC-CCCeEEECCcccC
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGF----------SIKIEAGKSTALVGQSGSGKSTIIGLIERFYDP-LKGDVKIDDRDIR 1069 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~i----------sl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp-~~G~I~IdG~dI~ 1069 (1133)
.|+++|+++.|+.. ..++|+.+ +++++. +|||||||||||||+++|.|++.| ++|.|+++|.++.
T Consensus 10 ~i~~~~l~~~~~~~-~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 10 SVAENNLCSQYEEK-VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp ----------CHHH-HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred hhhhhhhhHHHHHH-HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 58999999999531 12344444 366665 999999999999999999999989 7999999999963
Q ss_pred CC---ChhHHhhccccccccccccc-ccHHHHhcc
Q 041277 1070 SY---HLRSLRRHIALVSQEPTLFA-GTIRENIAY 1100 (1133)
Q Consensus 1070 ~i---~l~~LR~~isiV~Qdp~LF~-gTIreNI~~ 1100 (1133)
.. ....+|+++++|+|++.+|+ .|+++||.+
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~ 120 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINK 120 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHH
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHHHHH
Confidence 22 24578999999999998865 589999854
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.94 E-value=1e-09 Score=115.36 Aligned_cols=72 Identities=14% Similarity=0.147 Sum_probs=56.2
Q ss_pred eEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccc-cHHHHHh
Q 041277 383 CLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFAT-SIKENIL 458 (1133)
Q Consensus 383 ~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eni~ 458 (1133)
|+++++|++++|+||||||||||+++|+|+++ .+.+++.++........+..++|++|++.+|.. ++.+|+.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 57788999999999999999999999999974 588888887765544456789999999988765 6666654
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=98.91 E-value=3.9e-10 Score=116.33 Aligned_cols=82 Identities=23% Similarity=0.346 Sum_probs=69.3
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhhhcC-------------CCCCeEEECCcccCCCChhHHhhcccccccccccccc
Q 041277 1026 KIEAGKSTALVGQSGSGKSTIIGLIERFYD-------------PLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAG 1092 (1133)
Q Consensus 1026 ~I~~Ge~vaIVG~SGSGKSTL~~LL~R~yd-------------p~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~g 1092 (1133)
...+|+.++|+||||||||||+++|.+.++ |..|+ +||+|..-++.+.+++.+ .|+.+|+.+
T Consensus 15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle~~ 89 (197)
T 3ney_A 15 YFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLEFG 89 (197)
T ss_dssp -CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEEEE
T ss_pred CCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhhhh
Confidence 345899999999999999999999999986 77887 799999999999999876 699999999
Q ss_pred cHHHHhccCCCCCCCHHHHHHHHHH
Q 041277 1093 TIRENIAYGASDEIDESEIVEAAKA 1117 (1133)
Q Consensus 1093 TIreNI~~g~~~~~sdeei~~Al~~ 1117 (1133)
++.+|. ||.| .+++.+++++
T Consensus 90 ~~~~n~-YGt~----~~~v~~~l~~ 109 (197)
T 3ney_A 90 SYQGNM-FGTK----FETVHQIHKQ 109 (197)
T ss_dssp EETTEE-EEEE----HHHHHHHHHT
T ss_pred hhhcee-cccc----hhhHHHHHhc
Confidence 999994 8854 3455555543
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=3.3e-10 Score=132.49 Aligned_cols=80 Identities=16% Similarity=0.140 Sum_probs=64.6
Q ss_pred EEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhH-------
Q 041277 1003 ELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRS------- 1075 (1133)
Q Consensus 1003 ~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~------- 1075 (1133)
.+.++++.+ ..+|+|+||+|++ |.+||+||||||||||+++|.|+++|++|+|.++|.++...+...
T Consensus 8 ~l~~l~~~~-----~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~r~~~~~~ 81 (483)
T 3euj_A 8 KFRSLTLIN-----WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGSTSSSRDKGLYG 81 (483)
T ss_dssp EEEEEEEEE-----ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCCCCSSCCSCGG
T ss_pred ceeEEEEec-----cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCchhHHhHHHHH
Confidence 456666543 1379999999999 999999999999999999999999999999999999998665432
Q ss_pred -Hhhcccccccccc
Q 041277 1076 -LRRHIALVSQEPT 1088 (1133)
Q Consensus 1076 -LR~~isiV~Qdp~ 1088 (1133)
++..+.++.+++.
T Consensus 82 ~~~~~~~~~~~~~~ 95 (483)
T 3euj_A 82 KLKAGVCYAVLETV 95 (483)
T ss_dssp GSCSSEEEEEEEEE
T ss_pred hcCCCceEEEEehh
Confidence 2334566767654
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.90 E-value=6.7e-10 Score=123.41 Aligned_cols=111 Identities=17% Similarity=0.298 Sum_probs=77.8
Q ss_pred eeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCC
Q 041277 382 FCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGK 461 (1133)
Q Consensus 382 i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~ 461 (1133)
++++.++|++++|+||+||||||++..|++.+.+..|+|.+.+.|... .+ ..+
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r---------~~------------a~e------ 149 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR---------AA------------AIE------ 149 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC---------HH------------HHH------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc---------HH------------HHH------
Confidence 455677899999999999999999999999999998999887766421 00 011
Q ss_pred CCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHH---HHHHHHhhCCCEEEEeCcccCCChHHHHHH
Q 041277 462 EDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRI---AIARAIIKAPRILLLDEATSALDSESERVV 538 (1133)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri---~iARal~~~~~illlDE~ts~lD~~~~~~i 538 (1133)
++...++..+ +| . + ...|||+.|++ +++||+..+|+++|+|+|.. ......+
T Consensus 150 ------qL~~~~~~~g-------l~----~-~----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l 204 (306)
T 1vma_A 150 ------QLKIWGERVG-------AT----V-I----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNL 204 (306)
T ss_dssp ------HHHHHHHHHT-------CE----E-E----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHH
T ss_pred ------HHHHHHHHcC-------Cc----E-E----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHH
Confidence 1111222211 21 1 1 24689999999 99999999999999999974 3444444
Q ss_pred HHHHHH
Q 041277 539 QEALDK 544 (1133)
Q Consensus 539 ~~~l~~ 544 (1133)
++.+.+
T Consensus 205 ~~eL~~ 210 (306)
T 1vma_A 205 MEELRK 210 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.90 E-value=4.2e-10 Score=125.62 Aligned_cols=100 Identities=16% Similarity=0.120 Sum_probs=70.4
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEE---CCcccCCCChhHHh-hccccccccccc------ccccHH
Q 041277 1026 KIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKI---DDRDIRSYHLRSLR-RHIALVSQEPTL------FAGTIR 1095 (1133)
Q Consensus 1026 ~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~I---dG~dI~~i~l~~LR-~~isiV~Qdp~L------F~gTIr 1095 (1133)
++.+|++++|+||||||||||+++|. +.+|++|+|.+ +|.++..... ..+ +.+++|+|+|-+ .+-|+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~-~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR-LIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE-EEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE-EEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 45679999999999999999999999 99999999999 9998876442 223 479999999954 34578
Q ss_pred HHh--ccC---------C---CCCCCHHHHHHHHHHcchHH-HHhhcc
Q 041277 1096 ENI--AYG---------A---SDEIDESEIVEAAKAANAHD-FIAGLN 1128 (1133)
Q Consensus 1096 eNI--~~g---------~---~~~~sdeei~~Al~~a~l~d-fI~~LP 1128 (1133)
||+ .++ . +..-..+.+.+|++..++.+ ..++.|
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~ 285 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL 285 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH
Confidence 888 443 0 11112457899999999975 555444
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.6e-10 Score=122.47 Aligned_cols=90 Identities=14% Similarity=0.070 Sum_probs=66.9
Q ss_pred cEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCC--CCCeEEECCcccCCCChhHHhhcccccccccccccc-cH----HH
Q 041277 1024 SIKIEAGKSTALVGQSGSGKSTIIGLIERFYDP--LKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAG-TI----RE 1096 (1133)
Q Consensus 1024 sl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp--~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~g-TI----re 1096 (1133)
.-+.++|+.++|+||||||||||+++|.++++| ..|+|.++|.+.+. ..++.++|+||++.+|.. |. .|
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E 85 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLE 85 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEE
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHH
Confidence 346799999999999999999999999999986 68999999987653 246789999999999976 44 58
Q ss_pred HhccCCC-CCCCHHHHHHHHHH
Q 041277 1097 NIAYGAS-DEIDESEIVEAAKA 1117 (1133)
Q Consensus 1097 NI~~g~~-~~~sdeei~~Al~~ 1117 (1133)
|+.+... -..+.+++.++++.
T Consensus 86 ~~~~~~~~yg~~~~~v~~~l~~ 107 (219)
T 1s96_A 86 HAEVFGNYYGTSREAIEQVLAT 107 (219)
T ss_dssp EEEETTEEEEEEHHHHHHHHTT
T ss_pred HHHHHhccCCCCHHHHHHHHhc
Confidence 8876321 11245567766653
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=7.8e-10 Score=129.35 Aligned_cols=53 Identities=21% Similarity=0.164 Sum_probs=50.5
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCC
Q 041277 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQ 431 (1133)
Q Consensus 378 ~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~ 431 (1133)
+|+|+||++++ ++++|+||||||||||+++|+|+++|++|+|.++|.++...+
T Consensus 19 ~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~ 71 (483)
T 3euj_A 19 GFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGST 71 (483)
T ss_dssp TEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCC
T ss_pred cccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCc
Confidence 79999999999 999999999999999999999999999999999999887554
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.86 E-value=1.7e-10 Score=127.71 Aligned_cols=73 Identities=22% Similarity=0.278 Sum_probs=44.9
Q ss_pred EEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEE---CCeecCCCCHHHHhhhceEEecCCCCcc-----ccHHH
Q 041277 384 LTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIIL---DGVSIDKLQLKWLRSQMGLVSQEPALFA-----TSIKE 455 (1133)
Q Consensus 384 l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~---~g~~~~~~~~~~~r~~i~~v~Q~~~l~~-----~ti~e 455 (1133)
+++.+|++++|+||||+|||||+|+|.|+..|..|+|.+ +|+++.... ...+..++|++|.|.+.. .|+ |
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-H
Confidence 567799999999999999999999999999999999999 887775432 122223899999997653 478 8
Q ss_pred HHh
Q 041277 456 NIL 458 (1133)
Q Consensus 456 ni~ 458 (1133)
|+.
T Consensus 246 ~l~ 248 (307)
T 1t9h_A 246 ELG 248 (307)
T ss_dssp HHG
T ss_pred HHH
Confidence 983
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=2.8e-09 Score=118.25 Aligned_cols=138 Identities=14% Similarity=0.173 Sum_probs=90.1
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCH
Q 041277 387 PAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASM 466 (1133)
Q Consensus 387 ~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~ 466 (1133)
++|++++++||+||||||++..|++.+.+++| +++.++.+|++ ..+..|++.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G------------------~~V~lv~~D~~--r~~a~eqL~-------- 154 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH------------------KKIAFITTDTY--RIAAVEQLK-------- 154 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC------------------CCEEEEECCCS--STTHHHHHH--------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC------------------CEEEEEecCcc--cchHHHHHH--------
Confidence 47999999999999999999999999988778 14677777763 333333332
Q ss_pred HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh
Q 041277 467 EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV 546 (1133)
Q Consensus 467 ~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~ 546 (1133)
..++..+ +|. ... ..++..+.+++++ .+|+++|+| |+++|+..+..+.+..+-..
T Consensus 155 ----~~~~~~g-------l~~----~~~------~~~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~el~~~l~ 209 (296)
T 2px0_A 155 ----TYAELLQ-------APL----EVC------YTKEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDELKETIP 209 (296)
T ss_dssp ----HHHTTTT-------CCC----CBC------SSHHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHHHHHHSC
T ss_pred ----HHHHhcC-------CCe----Eec------CCHHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHHHHHHHh
Confidence 1111111 111 111 1234457777764 999999999 99999877666655443322
Q ss_pred ---CCCeEEEE--ecCcchhhc-CCEEEEEeCCeEEe
Q 041277 547 ---VGRTTIII--AHRLSTIRN-ADVIAVVQDGQVME 577 (1133)
Q Consensus 547 ---~~~t~i~i--tH~~~~~~~-~d~i~~l~~G~i~~ 577 (1133)
.+.+++++ +|..+.+.. +|++..++.+.++-
T Consensus 210 ~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 210 FESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp CCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred hcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 23345555 898777765 77766666677765
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=6.5e-11 Score=126.75 Aligned_cols=129 Identities=19% Similarity=0.204 Sum_probs=97.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhcc---CCCccEEEE--------CCeecCC-CCHHHHhhhceEEecCC------CCc
Q 041277 388 AGKTVALVGGSGSGKSTVIALLQRFY---APLGGEIIL--------DGVSIDK-LQLKWLRSQMGLVSQEP------ALF 449 (1133)
Q Consensus 388 ~g~~~~ivG~sGsGKSTll~~l~~~~---~~~~G~i~~--------~g~~~~~-~~~~~~r~~i~~v~Q~~------~l~ 449 (1133)
.+.+++|+||+||||||++++|.+.+ .++.|.+.. +|.++.+ ....++++++++++|++ .+.
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILE 83 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEEC
Confidence 35689999999999999999999887 788899887 6777653 44567888999999986 344
Q ss_pred cccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccc-cCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCccc
Q 041277 450 ATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQV-GERGVQMSGGQKQRIAIARAIIKAPRILLLDEATS 528 (1133)
Q Consensus 450 ~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~-~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts 528 (1133)
..++.+++. .+++..++..+..++.+.....+..+.+ .++|.-++|+ .++++++.+++++++.++..
T Consensus 84 ~~~v~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~~~ 151 (227)
T 1cke_A 84 GEDVSGEIR-------TQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDASS 151 (227)
T ss_dssp TEECHHHHT-------SHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEECCH
T ss_pred CeeCchhhC-------CHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeCCH
Confidence 557777763 3567777778888888777665555544 3456677776 45667788999999988753
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=3.9e-09 Score=117.14 Aligned_cols=132 Identities=19% Similarity=0.163 Sum_probs=91.1
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
+.++++++.|+.. . ++++|+ +|++++++|++|+||||++..|++.+.+..|+|.+.+.|+..-...
T Consensus 77 ~~~~~l~~~~~~~---~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~------- 142 (295)
T 1ls1_A 77 TVYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAR------- 142 (295)
T ss_dssp HHHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHH-------
T ss_pred HHHHHHHHHHCCC---C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHH-------
Confidence 4456667777532 1 678888 9999999999999999999999999999999999988776421100
Q ss_pred EEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCE
Q 041277 441 LVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRI 520 (1133)
Q Consensus 441 ~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~i 520 (1133)
+. .....+.. .+| -... +..-...+-+|.+++++...++++
T Consensus 143 --------------~q------------l~~~~~~~-------~l~----~~~~--~~~~~p~~l~~~~l~~~~~~~~D~ 183 (295)
T 1ls1_A 143 --------------EQ------------LRLLGEKV-------GVP----VLEV--MDGESPESIRRRVEEKARLEARDL 183 (295)
T ss_dssp --------------HH------------HHHHHHHH-------TCC----EEEC--CTTCCHHHHHHHHHHHHHHHTCCE
T ss_pred --------------HH------------HHHhcccC-------CeE----EEEc--CCCCCHHHHHHHHHHHHHhCCCCE
Confidence 00 00001111 111 1100 011234456789999998899999
Q ss_pred EEEeCc-ccCCChHHHHHHHHHHHHH
Q 041277 521 LLLDEA-TSALDSESERVVQEALDKA 545 (1133)
Q Consensus 521 lllDE~-ts~lD~~~~~~i~~~l~~~ 545 (1133)
+|+|+| ++++|......+.+..+..
T Consensus 184 viiDtpp~~~~d~~~~~~l~~~~~~~ 209 (295)
T 1ls1_A 184 ILVDTAGRLQIDEPLMGELARLKEVL 209 (295)
T ss_dssp EEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCccccHHHHHHHHHHhhhc
Confidence 999999 9999988777777666554
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.84 E-value=9e-12 Score=138.00 Aligned_cols=136 Identities=23% Similarity=0.240 Sum_probs=94.4
Q ss_pred EEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceE
Q 041277 362 EFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGL 441 (1133)
Q Consensus 362 ~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 441 (1133)
+++++.+.|.. ..+++++++++++| ++|+||||||||||+++|++... .|.|.+++.++.+......++++++
T Consensus 51 ~l~~l~~~~~~---~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 123 (278)
T 1iy2_A 51 ELKEIVEFLKN---PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 123 (278)
T ss_dssp HHHHHHHHHHC---HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHH
T ss_pred HHHHHHHHHHC---HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHH
Confidence 34555555642 24899999999999 99999999999999999999886 7999999987755544455667888
Q ss_pred EecCCC-Ccc-ccHHHHHh-cCCCCCC-----HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHH
Q 041277 442 VSQEPA-LFA-TSIKENIL-FGKEDAS-----MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARA 513 (1133)
Q Consensus 442 v~Q~~~-l~~-~ti~eni~-~~~~~~~-----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa 513 (1133)
++|++. .+. -++.||+. ++..... .++..+ .+..+. ..|||||+||+.+++|
T Consensus 124 ~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~---------~~~~ll-----------~~lsgg~~~~~~i~~a 183 (278)
T 1iy2_A 124 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQ---------TLNQLL-----------VEMDGFEKDTAIVVMA 183 (278)
T ss_dssp HHHHHHTSCSEEEEEETHHHHHCC--------CHHHHH---------HHHHHH-----------HHHTTCCTTCCEEEEE
T ss_pred HHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHH---------HHHHHH-----------HHHhCCCCCCCEEEEE
Confidence 888864 333 36677773 3321110 111111 112221 1489999999999999
Q ss_pred HhhCCCEEEEeCc
Q 041277 514 IIKAPRILLLDEA 526 (1133)
Q Consensus 514 l~~~~~illlDE~ 526 (1133)
+..+|++ +|++
T Consensus 184 ~t~~p~~--ld~~ 194 (278)
T 1iy2_A 184 ATNRPDI--LDPA 194 (278)
T ss_dssp EESCTTS--SCHH
T ss_pred ecCCchh--CCHh
Confidence 9999986 4544
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.84 E-value=9.4e-10 Score=113.15 Aligned_cols=82 Identities=15% Similarity=0.190 Sum_probs=65.9
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhhhcCC-CCCeEE----------ECCcccCCCChhHHhhcccccccccccccccHHH
Q 041277 1028 EAGKSTALVGQSGSGKSTIIGLIERFYDP-LKGDVK----------IDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRE 1096 (1133)
Q Consensus 1028 ~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp-~~G~I~----------IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIre 1096 (1133)
.+|+.++|+||||||||||+++|.+++++ ..|.|. +||+|...++.+.+++. +.|+.+++.+++.+
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 79 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD---ISNNEYLEYGSHED 79 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHH---HHTTCEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHH---HHcCCceEEEEEcC
Confidence 36899999999999999999999999863 334443 58889888999998874 67999999999999
Q ss_pred HhccCCCCCCCHHHHHHHHHH
Q 041277 1097 NIAYGASDEIDESEIVEAAKA 1117 (1133)
Q Consensus 1097 NI~~g~~~~~sdeei~~Al~~ 1117 (1133)
| .||.+ .+++.++++.
T Consensus 80 n-~yg~~----~~~i~~~l~~ 95 (180)
T 1kgd_A 80 A-MYGTK----LETIRKIHEQ 95 (180)
T ss_dssp E-EEEEE----HHHHHHHHHT
T ss_pred c-ccccc----HHHHHHHHHC
Confidence 9 57643 4566666653
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=4.1e-10 Score=120.51 Aligned_cols=92 Identities=18% Similarity=0.169 Sum_probs=78.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhhhc---CCCCCeEEE--------CCcccC-CCChhHHhhccccccccc------cccc
Q 041277 1030 GKSTALVGQSGSGKSTIIGLIERFY---DPLKGDVKI--------DDRDIR-SYHLRSLRRHIALVSQEP------TLFA 1091 (1133)
Q Consensus 1030 Ge~vaIVG~SGSGKSTL~~LL~R~y---dp~~G~I~I--------dG~dI~-~i~l~~LR~~isiV~Qdp------~LF~ 1091 (1133)
+.+|||+|++||||||++++|.+.| .++.|+|.. +|.|+. +..+.++++++++++|++ .++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG 84 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECC
Confidence 5789999999999999999999988 778899988 788876 366788999999999987 5677
Q ss_pred ccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhccc
Q 041277 1092 GTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNE 1129 (1133)
Q Consensus 1092 gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~ 1129 (1133)
.++.+|++ ++++.+++..+++|++|...+.
T Consensus 85 ~~v~~~~~--------~~~~~~~~~~~~~~~~v~~~~~ 114 (227)
T 1cke_A 85 EDVSGEIR--------TQEVANAASQVAAFPRVREALL 114 (227)
T ss_dssp EECHHHHT--------SHHHHHHHHHHTTCHHHHHHHH
T ss_pred eeCchhhC--------CHHHHHHHHHhcCCHHHHHHHH
Confidence 78888872 4589999999999999887544
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.82 E-value=7.3e-12 Score=143.34 Aligned_cols=170 Identities=16% Similarity=0.163 Sum_probs=108.7
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHHh------------ccCCCccEEEECCeecCCCCH-HHHhhhc---eEEecCCCC
Q 041277 385 TIPAGKTVALVGGSGSGKSTVIALLQR------------FYAPLGGEIILDGVSIDKLQL-KWLRSQM---GLVSQEPAL 448 (1133)
Q Consensus 385 ~i~~g~~~~ivG~sGsGKSTll~~l~~------------~~~~~~G~i~~~g~~~~~~~~-~~~r~~i---~~v~Q~~~l 448 (1133)
.+++|..++|+|++|+|||||+++|.| ..+|+.|.+.++|..+..+.. ..-++.+ .++.+.|-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 557899999999999999999999999 567999999998854321100 0001112 356677766
Q ss_pred ccc-cHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCC--CEEEEeC
Q 041277 449 FAT-SIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAP--RILLLDE 525 (1133)
Q Consensus 449 ~~~-ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~--~illlDE 525 (1133)
..+ +..|++ . ......++.+.. +...-+..+ ......+||+. || +++++||
T Consensus 96 ~~~~s~~e~L-------~-~~fl~~ir~~d~---il~Vvd~~~---d~~i~~v~~~~------------dP~~di~ilde 149 (392)
T 1ni3_A 96 TKGASTGVGL-------G-NAFLSHVRAVDA---IYQVVRAFD---DAEIIHVEGDV------------DPIRDLSIIVD 149 (392)
T ss_dssp CCCCCSSSSS-------C-HHHHHHHTTCSE---EEEEEECCC---TTCSSCCSSSS------------CHHHHHHHHHH
T ss_pred ccCCcHHHHH-------H-HHHHHHHHHHHH---HHHHHhccc---cceeeeecccc------------Ccchhhhhchh
Confidence 543 322222 0 111111111110 000000000 12223456653 89 9999999
Q ss_pred cccCCChHHHHHHHHHHHHH-hC-CCeEEEEecCcchhhc-CCEEE-EEeCC-eEEeecCcc
Q 041277 526 ATSALDSESERVVQEALDKA-VV-GRTTIIIAHRLSTIRN-ADVIA-VVQDG-QVMETGSHD 582 (1133)
Q Consensus 526 ~ts~lD~~~~~~i~~~l~~~-~~-~~t~i~itH~~~~~~~-~d~i~-~l~~G-~i~~~g~~~ 582 (1133)
|++.+|++..+...+.+... .+ |+|+ ++|.+..+.. ||++. +|++| +++..|+.+
T Consensus 150 el~~~D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 150 ELLIKDAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCGGGSCCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCceeecCCCC
Confidence 99999999988888888776 44 5664 3999988766 99999 99999 888766543
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=2.6e-12 Score=146.22 Aligned_cols=154 Identities=18% Similarity=0.205 Sum_probs=97.2
Q ss_pred EEEEEEcCCCCCCccccceeEEeeCC-------CEEEEEcCCCCcHHHHHHHHHhcc----CCCccEEEECCeecCCCCH
Q 041277 364 KCVQFAYPSRPESIIFKDFCLTIPAG-------KTVALVGGSGSGKSTVIALLQRFY----APLGGEIILDGVSIDKLQL 432 (1133)
Q Consensus 364 ~~v~~~y~~~~~~~~l~~i~l~i~~g-------~~~~ivG~sGsGKSTll~~l~~~~----~~~~G~i~~~g~~~~~~~~ 432 (1133)
++++..|+. ..+++++++.+++| +.++|+||+|+|||||+++|++.+ .+.+|.+..++.++.....
T Consensus 22 ~~l~~~~g~---~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~ 98 (334)
T 1in4_A 22 KSLDEFIGQ---ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILT 98 (334)
T ss_dssp SSGGGCCSC---HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHH
T ss_pred ccHHHccCc---HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHH
Confidence 344444543 24899999999877 899999999999999999999998 6778887776665532211
Q ss_pred HHHhhhceEEecCCCCccccHHHHHhcCCCCCC------HHHHHHHHHHhchHHHHHhCCC-cccccccCCCCCCChHHH
Q 041277 433 KWLRSQMGLVSQEPALFATSIKENILFGKEDAS------MEEVIEAAKASNAHNFIRQLPQ-QYDTQVGERGVQMSGGQK 505 (1133)
Q Consensus 433 ~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~------~~~~~~~~~~~~~~~~i~~l~~-g~~t~~~~~g~~LSgGqk 505 (1133)
...+..|.++.|...++. ++.|++........ .... .+. +.. .+|. ++.. ...+...||+|+|
T Consensus 99 ~~~~~~v~~iDE~~~l~~-~~~e~L~~~~~~~~~~i~~~~~~~---~~~--i~~---~l~~~~li~-at~~~~~Ls~~l~ 168 (334)
T 1in4_A 99 SLERGDVLFIDEIHRLNK-AVEELLYSAIEDFQIDIMIGKGPS---AKS--IRI---DIQPFTLVG-ATTRSGLLSSPLR 168 (334)
T ss_dssp HCCTTCEEEEETGGGCCH-HHHHHHHHHHHTSCCCC-----------------------CCCEEEE-EESCGGGSCHHHH
T ss_pred HccCCCEEEEcchhhcCH-HHHHHHHHHHHhcccceeeccCcc---ccc--ccc---cCCCeEEEE-ecCCcccCCHHHH
Confidence 111356999999887765 78787742111000 0000 000 001 1111 1111 1223357999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh
Q 041277 506 QRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV 546 (1133)
Q Consensus 506 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~ 546 (1133)
||++++ .+||+.+...+.+.+++..
T Consensus 169 sR~~l~----------------~~Ld~~~~~~l~~iL~~~~ 193 (334)
T 1in4_A 169 SRFGII----------------LELDFYTVKELKEIIKRAA 193 (334)
T ss_dssp TTCSEE----------------EECCCCCHHHHHHHHHHHH
T ss_pred HhcCce----------------eeCCCCCHHHHHHHHHHHH
Confidence 998655 7888888888888887654
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.1e-09 Score=122.85 Aligned_cols=76 Identities=20% Similarity=0.172 Sum_probs=65.0
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCCh----hHHhhccc--cccccccccc-ccHHHHh
Q 041277 1026 KIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHL----RSLRRHIA--LVSQEPTLFA-GTIRENI 1098 (1133)
Q Consensus 1026 ~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l----~~LR~~is--iV~Qdp~LF~-gTIreNI 1098 (1133)
..++|+.++|||||||||||+++.|.+++.|++|+|.++|.|+..... ..++++++ +++|++.++. .|++||+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 457899999999999999999999999999999999999999977663 34566666 8999988775 5899998
Q ss_pred ccC
Q 041277 1099 AYG 1101 (1133)
Q Consensus 1099 ~~g 1101 (1133)
.++
T Consensus 205 ~~~ 207 (328)
T 3e70_C 205 QHA 207 (328)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=7e-10 Score=125.64 Aligned_cols=66 Identities=18% Similarity=0.195 Sum_probs=59.8
Q ss_pred ccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCccc
Q 041277 1000 GNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDI 1068 (1133)
Q Consensus 1000 g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI 1068 (1133)
.-++.+||++.|+. +..+|+++ |+|.+||++||+|++|||||||+++|.|+.+|+.|.|.++|.+.
T Consensus 44 ~~i~~~~l~~~~~t--g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~ 109 (347)
T 2obl_A 44 DPLLRQVIDQPFIL--GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERG 109 (347)
T ss_dssp CSTTCCCCCSEECC--SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCH
T ss_pred CCeeecccceecCC--CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccH
Confidence 35889999999963 34689999 99999999999999999999999999999999999999999763
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=98.81 E-value=1.7e-10 Score=130.12 Aligned_cols=98 Identities=15% Similarity=0.200 Sum_probs=66.0
Q ss_pred cccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcC-CCCCeEEEC-CcccCCCChhHHhhcccccccccccccc-cHH
Q 041277 1019 IFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYD-PLKGDVKID-DRDIRSYHLRSLRRHIALVSQEPTLFAG-TIR 1095 (1133)
Q Consensus 1019 vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~yd-p~~G~I~Id-G~dI~~i~l~~LR~~isiV~Qdp~LF~g-TIr 1095 (1133)
-++++++. .+|+++||+|+||||||||+++|.++.. |..|+|.++ |.+.. ...++++++|||++.|++. |++
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv~ 279 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGVR 279 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHHH
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccHH
Confidence 36777775 4899999999999999999999999999 999999997 77653 2456789999999998865 899
Q ss_pred HHhccCCCCCCCHHHHH----HHHHHcchHHHHh
Q 041277 1096 ENIAYGASDEIDESEIV----EAAKAANAHDFIA 1125 (1133)
Q Consensus 1096 eNI~~g~~~~~sdeei~----~Al~~a~l~dfI~ 1125 (1133)
++-.. ..+.+++. ++++.+++.+|-.
T Consensus 280 e~~l~----~l~~~e~~~~~~e~l~~~gl~~f~~ 309 (358)
T 2rcn_A 280 EFGLW----HLEPEQITQGFVEFHDYLGHCKYRD 309 (358)
T ss_dssp TCCCC----CCCHHHHHHTSGGGGGGTTCSSSTT
T ss_pred Hhhhc----CCCHHHHHHHHHHHHHHcCCchhcC
Confidence 96322 23444443 4455556555543
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=1.5e-11 Score=134.33 Aligned_cols=137 Identities=22% Similarity=0.238 Sum_probs=94.6
Q ss_pred EEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceE
Q 041277 362 EFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGL 441 (1133)
Q Consensus 362 ~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 441 (1133)
+++++.+.|.. ..+++++++++++| ++|+||||||||||+++|++... .|.+.++|.++.+......++.+++
T Consensus 27 ~l~~l~~~~~~---~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 99 (254)
T 1ixz_A 27 ELKEIVEFLKN---PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 99 (254)
T ss_dssp HHHHHHHHHHC---HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHH
T ss_pred HHHHHHHHHHC---HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHH
Confidence 45566666642 24899999999999 99999999999999999999886 7999999987755444455667888
Q ss_pred EecCCC-Ccc-ccHHHHH-hcCCCCC-----CHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHH
Q 041277 442 VSQEPA-LFA-TSIKENI-LFGKEDA-----SMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARA 513 (1133)
Q Consensus 442 v~Q~~~-l~~-~ti~eni-~~~~~~~-----~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa 513 (1133)
++|+.. .+. -++.||+ .++.... ..++..+ .+..+. ..|||||+||+.+++|
T Consensus 100 ~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~---------~~~~ll-----------~~l~g~~~~~~~i~~a 159 (254)
T 1ixz_A 100 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQ---------TLNQLL-----------VEMDGFEKDTAIVVMA 159 (254)
T ss_dssp HHHHHTTSSSEEEEEETHHHHHC---------CHHHHH---------HHHHHH-----------HHHHTCCTTCCEEEEE
T ss_pred HHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHH---------HHHHHH-----------HHHhCCCCCCCEEEEE
Confidence 888763 333 3666776 3332111 0111111 111111 1478999999999999
Q ss_pred HhhCCCEEEEeCcc
Q 041277 514 IIKAPRILLLDEAT 527 (1133)
Q Consensus 514 l~~~~~illlDE~t 527 (1133)
+..+|++ +|++.
T Consensus 160 ~t~~p~~--ld~~l 171 (254)
T 1ixz_A 160 ATNRPDI--LDPAL 171 (254)
T ss_dssp EESCGGG--SCGGG
T ss_pred ccCCchh--CCHHH
Confidence 9999986 56654
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.80 E-value=1.7e-09 Score=113.58 Aligned_cols=71 Identities=13% Similarity=0.165 Sum_probs=57.8
Q ss_pred cEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcccccccccccccc-cHHHHh
Q 041277 1024 SIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAG-TIRENI 1098 (1133)
Q Consensus 1024 sl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~g-TIreNI 1098 (1133)
|+++++|+.+||+||||||||||+++|.+++ | .+.++|.++...+....+..+++++|++.+|.. +..+|+
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKAL-A---EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAF 72 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHS-S---SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhC-C---CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcE
Confidence 6788999999999999999999999999997 3 689999988877766678899999999998865 444444
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.79 E-value=9.6e-10 Score=127.22 Aligned_cols=91 Identities=20% Similarity=0.180 Sum_probs=56.9
Q ss_pred ccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhc
Q 041277 1000 GNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRH 1079 (1133)
Q Consensus 1000 g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~ 1079 (1133)
+.|+++||+++|+. ..+++|+||+| +|||+||||||||++.|++...|..| .+|.++...+ ...++.
T Consensus 10 ~~l~~~~l~~~y~~---~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~~-t~~~~~ 76 (418)
T 2qag_C 10 GYVGFANLPNQVYR---KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIKK-TVQVEQ 76 (418)
T ss_dssp -----CCCCCCTTT---TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEE
T ss_pred CcEEEEecceeECC---EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCcc-ceeeee
Confidence 56999999999963 35899999998 99999999999999999999876555 2455443221 122467
Q ss_pred ccccccccccc-cccHHHHhccCCC
Q 041277 1080 IALVSQEPTLF-AGTIRENIAYGAS 1103 (1133)
Q Consensus 1080 isiV~Qdp~LF-~gTIreNI~~g~~ 1103 (1133)
+++++|++.++ .-||.||+.++..
T Consensus 77 i~~v~q~~~~~~~Ltv~Dt~g~~~~ 101 (418)
T 2qag_C 77 SKVLIKEGGVQLLLTIVDTPGFGDA 101 (418)
T ss_dssp EECC------CEEEEEEECC-----
T ss_pred EEEEEecCCcccceeeeechhhhhh
Confidence 99999998876 6799999988753
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.4e-09 Score=127.69 Aligned_cols=81 Identities=14% Similarity=0.259 Sum_probs=69.8
Q ss_pred cccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcC--------------------------------------CCCCe
Q 041277 1019 IFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYD--------------------------------------PLKGD 1060 (1133)
Q Consensus 1019 vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~yd--------------------------------------p~~G~ 1060 (1133)
+|+++||++++| .++|||+||||||||+++|..+.. +.+|+
T Consensus 50 ~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~~ 128 (415)
T 4aby_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGA 128 (415)
T ss_dssp TEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCEE
T ss_pred ceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCceE
Confidence 689999999999 999999999999999999966653 44788
Q ss_pred EEECCcccCCCChhHHhhc-ccccccccccccccHHHHhcc
Q 041277 1061 VKIDDRDIRSYHLRSLRRH-IALVSQEPTLFAGTIRENIAY 1100 (1133)
Q Consensus 1061 I~IdG~dI~~i~l~~LR~~-isiV~Qdp~LF~gTIreNI~~ 1100 (1133)
+++||.+++..++.++++. +++++|++.++-.+-.++..+
T Consensus 129 i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ 169 (415)
T 4aby_A 129 ARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGL 169 (415)
T ss_dssp EEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHH
T ss_pred EEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHH
Confidence 9999999987778888887 799999999888776655544
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=98.78 E-value=7.2e-10 Score=120.55 Aligned_cols=97 Identities=21% Similarity=0.199 Sum_probs=72.0
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHH---hccCCCccEEE--------ECCeecC-CCCHHHHhhhceEEecC
Q 041277 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQ---RFYAPLGGEII--------LDGVSID-KLQLKWLRSQMGLVSQE 445 (1133)
Q Consensus 378 ~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~---~~~~~~~G~i~--------~~g~~~~-~~~~~~~r~~i~~v~Q~ 445 (1133)
++++.+ ++|++++|+|||||||||++++|+ |++.|++|.+. .+|.++. ......+++++++++|+
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 95 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVS 95 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEec
Confidence 444443 789999999999999999999999 99999999999 9999984 45677899999999975
Q ss_pred C------CCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHh
Q 041277 446 P------ALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQ 484 (1133)
Q Consensus 446 ~------~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~ 484 (1133)
+ .++..++.+|+.. +++..++.....++.+..
T Consensus 96 ~~~~~~~~l~~~~v~~~i~~-------~~v~~~~s~~~~~~~vr~ 133 (252)
T 4e22_A 96 QNGQLQVILEGEDVSNEIRT-------ETVGNTASQAAAFPRVRE 133 (252)
T ss_dssp ETTEEEEEETTEECTTGGGS-------HHHHHHHHHHTTSHHHHH
T ss_pred CCCCceEEECCeehhHHHHH-------HHHHHHHHHhcccHHHHH
Confidence 3 4556688887652 345455544444444443
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=98.77 E-value=1.3e-09 Score=120.46 Aligned_cols=89 Identities=10% Similarity=0.035 Sum_probs=60.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcccccccccccccccHHHHhccCCCCC--C
Q 041277 1029 AGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDE--I 1106 (1133)
Q Consensus 1029 ~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~--~ 1106 (1133)
++..|||+|+|||||||++++|.+++++. | . . |+.+.+|+||+++|++++++|+.++.++. .
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~--------~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G--------G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKLL 93 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G--------G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C--------C-CceEEEeccccccCChHHHHHHhccccccchh
Confidence 56789999999999999999999999874 2 1 1 56677779999999999999997753210 0
Q ss_pred CHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1107 DESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1107 sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
+....-++.+.+.+.+++.+|++|++|
T Consensus 94 ~~~g~p~a~d~~~l~~~l~~l~~g~~t 120 (290)
T 1odf_A 94 QGRGLPGTHDMKLLQEVLNTIFNNNEH 120 (290)
T ss_dssp SSSCSTTSBCHHHHHHHHHHHTC----
T ss_pred hhccCcchhHHHHHHHHHHHhhccCcc
Confidence 000011122234567888889888754
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=2.5e-10 Score=132.21 Aligned_cols=103 Identities=15% Similarity=0.156 Sum_probs=72.7
Q ss_pred cccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCC----CChhHHhhcccccc---------c
Q 041277 1019 IFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRS----YHLRSLRRHIALVS---------Q 1085 (1133)
Q Consensus 1019 vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~----i~l~~LR~~isiV~---------Q 1085 (1133)
+|+++ + .++|+.++|+|||||||||++++|.+++.|++|+|.++|.++.. ++...+++++++++ |
T Consensus 158 ~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq 235 (418)
T 1p9r_A 158 NFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQ 235 (418)
T ss_dssp HHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGG
T ss_pred HHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhcc
Confidence 55665 4 37999999999999999999999999999999999999988732 11234556676655 9
Q ss_pred ccccc--c-----ccHHHHhccCCC--------CCCCHHHHHHHHHHcchHHH
Q 041277 1086 EPTLF--A-----GTIRENIAYGAS--------DEIDESEIVEAAKAANAHDF 1123 (1133)
Q Consensus 1086 dp~LF--~-----gTIreNI~~g~~--------~~~sdeei~~Al~~a~l~df 1123 (1133)
+|.++ . -|+++|+.++.. +..+..+..+.++..++.++
T Consensus 236 ~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~ 288 (418)
T 1p9r_A 236 DPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPF 288 (418)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHH
T ss_pred CCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHH
Confidence 99763 2 388888875321 11122345556666666554
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.76 E-value=5.3e-10 Score=117.95 Aligned_cols=84 Identities=17% Similarity=0.296 Sum_probs=51.3
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhc-----CCCCCeEEE-------CCcccC
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFY-----DPLKGDVKI-------DDRDIR 1069 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~y-----dp~~G~I~I-------dG~dI~ 1069 (1133)
|+++|++|+|+ .++|++ |++++|++|+|||++|||||||++.|.+.. .|+.|.+.+ ++..+-
T Consensus 4 l~~~~~~~~~~----~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~ 77 (210)
T 1pui_A 4 LNYQQTHFVMS----APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLV 77 (210)
T ss_dssp -------CEEE----ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEE
T ss_pred hhhhhhhheee----cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEE
Confidence 78999999995 247888 899999999999999999999999999988 888888765 333332
Q ss_pred CCC-----------hhHHhhccccccccccccc
Q 041277 1070 SYH-----------LRSLRRHIALVSQEPTLFA 1091 (1133)
Q Consensus 1070 ~i~-----------l~~LR~~isiV~Qdp~LF~ 1091 (1133)
+.+ .+.+|+.++.+.|++..++
T Consensus 78 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (210)
T 1pui_A 78 DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQ 110 (210)
T ss_dssp ECCCCC------CCHHHHHHHHHHHHHHCTTEE
T ss_pred ECcCCcccccCHHHHHHHHHHHHHHHHhhhccc
Confidence 211 2456777888887654433
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.76 E-value=1.1e-09 Score=121.19 Aligned_cols=97 Identities=16% Similarity=0.223 Sum_probs=58.4
Q ss_pred EEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEE---CCcccCCCChhHHhhccccccccccccc-----ccHHH
Q 041277 1025 IKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKI---DDRDIRSYHLRSLRRHIALVSQEPTLFA-----GTIRE 1096 (1133)
Q Consensus 1025 l~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~I---dG~dI~~i~l~~LR~~isiV~Qdp~LF~-----gTIre 1096 (1133)
+++.+|++++|+|+||+|||||+++|.++..|..|+|.+ +|.++.... +..+..+++|+|.|-++. -|+ |
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-H
Confidence 356689999999999999999999999999999999999 898876532 222223899999997654 477 9
Q ss_pred Hhc--cC------------C--CCCCCHHHHHHHHHHcchHHH
Q 041277 1097 NIA--YG------------A--SDEIDESEIVEAAKAANAHDF 1123 (1133)
Q Consensus 1097 NI~--~g------------~--~~~~sdeei~~Al~~a~l~df 1123 (1133)
||. +. + ...-.+..+.+|++..++.+.
T Consensus 246 ~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~ 288 (307)
T 1t9h_A 246 ELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQY 288 (307)
T ss_dssp HHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHH
T ss_pred HHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHH
Confidence 983 21 0 111124578899999988653
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=98.76 E-value=2e-09 Score=111.68 Aligned_cols=70 Identities=26% Similarity=0.235 Sum_probs=57.1
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcccccccccccccccHHHHhcc
Q 041277 1026 KIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAY 1100 (1133)
Q Consensus 1026 ~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~ 1100 (1133)
.+++|+.++|+|++||||||++++|.+. |..|.|.+||.++..... -++.+++++|++. .+.|+++|+.+
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~--~~~~~~~~~~~~~-~~~~v~~~l~~ 74 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK--HGRIDPWLPQSHQ-QNRMIMQIAAD 74 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC--SSCCCTTSSSHHH-HHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh--cccccCCccchhh-hhHHHHHHHHH
Confidence 4789999999999999999999999998 678999999988744321 1456899999876 56788888854
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.76 E-value=3.5e-08 Score=111.96 Aligned_cols=143 Identities=23% Similarity=0.356 Sum_probs=85.0
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEE-EECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCC
Q 041277 385 TIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI-ILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKED 463 (1133)
Q Consensus 385 ~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i-~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~ 463 (1133)
-+++|+++.|.||+|||||||+..++.......|.+ +++... ..+. ...+++|+.+|+.. +..
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~--~~~~-~~a~~lG~~~~~l~-----------i~~-- 120 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH--ALDP-EYAKKLGVDTDSLL-----------VSQ-- 120 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCH-HHHHHTTCCGGGCE-----------EEC--
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC--CcCH-HHHHHcCCCHHHeE-----------Eec--
Confidence 578999999999999999999888876554444443 333321 0111 11222332222111 000
Q ss_pred CCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhC--CCEEEEeCcccCC----------C
Q 041277 464 ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKA--PRILLLDEATSAL----------D 531 (1133)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~--~~illlDE~ts~l----------D 531 (1133)
..+. .|-+.++++++++ |+++++||+++.+ |
T Consensus 121 -----------------------------------~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd 163 (349)
T 2zr9_A 121 -----------------------------------PDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGD 163 (349)
T ss_dssp -----------------------------------CSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC---
T ss_pred -----------------------------------CCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhcccccc
Confidence 0111 2334578888765 9999999999998 3
Q ss_pred h---HHHHHHHHHHHHH-----hCCCeEEEEecCcc----------------hhhc-CCEEEEEeCCeEEeecC
Q 041277 532 S---ESERVVQEALDKA-----VVGRTTIIIAHRLS----------------TIRN-ADVIAVVQDGQVMETGS 580 (1133)
Q Consensus 532 ~---~~~~~i~~~l~~~-----~~~~t~i~itH~~~----------------~~~~-~d~i~~l~~G~i~~~g~ 580 (1133)
+ ...+.+.+.++++ ..+.|+|+++|-.. .+++ ||.++.++.+++...|+
T Consensus 164 ~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 164 SHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred chhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 2 1222344444433 24899999999543 1444 89999998887766554
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.75 E-value=5.9e-09 Score=112.82 Aligned_cols=166 Identities=17% Similarity=0.146 Sum_probs=89.1
Q ss_pred cccce-eEEeeCCCEEEEEcCCCCcHHHHHHHH-HhccCCCccEEEECCeecCCCCHHHHh---hhceEEecCCCCcccc
Q 041277 378 IFKDF-CLTIPAGKTVALVGGSGSGKSTVIALL-QRFYAPLGGEIILDGVSIDKLQLKWLR---SQMGLVSQEPALFATS 452 (1133)
Q Consensus 378 ~l~~i-~l~i~~g~~~~ivG~sGsGKSTll~~l-~~~~~~~~G~i~~~g~~~~~~~~~~~r---~~i~~v~Q~~~l~~~t 452 (1133)
.|+++ .--+++|++++|+||+|||||||+..+ .+..+...+.+++++.. +...++ +++++.+|+...
T Consensus 11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~----~~~~~~~~~~~~g~~~~~~~~---- 82 (247)
T 2dr3_A 11 GVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE----HPVQVRQNMAQFGWDVKPYEE---- 82 (247)
T ss_dssp THHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS----CHHHHHHHHHTTTCCCHHHHH----
T ss_pred hHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC----CHHHHHHHHHHcCCCHHHHhh----
Confidence 46666 567899999999999999999995544 55555444555555432 223322 345555543210
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHh--hCCCEEEEeCcccCC
Q 041277 453 IKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAII--KAPRILLLDEATSAL 530 (1133)
Q Consensus 453 i~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~--~~~~illlDE~ts~l 530 (1133)
.+|+.+-.. ... .+...+. .+..+-+. +....+....++.++ .+|+++++|++++-+
T Consensus 83 -~~~l~~~~~--~~~-------------~~~~~~~-~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~ 141 (247)
T 2dr3_A 83 -KGMFAMVDA--FTA-------------GIGKSKE-YEKYIVHD----LTDIREFIEVLRQAIRDINAKRVVVDSVTTLY 141 (247)
T ss_dssp -HTSEEEEEC--STT-------------TTCC--C-CCSCBCSC----CSSHHHHHHHHHHHHHHHTCCEEEEETSGGGT
T ss_pred -CCcEEEEec--chh-------------hcccccc-cccccccC----ccCHHHHHHHHHHHHHHhCCCEEEECCchHhh
Confidence 001111000 000 0000000 00000010 112333334444444 579999999999988
Q ss_pred --ChHHHHHHHHHHHHH--hCCCeEEEEecCcch--------h-hcCCEEEEEeC
Q 041277 531 --DSESERVVQEALDKA--VVGRTTIIIAHRLST--------I-RNADVIAVVQD 572 (1133)
Q Consensus 531 --D~~~~~~i~~~l~~~--~~~~t~i~itH~~~~--------~-~~~d~i~~l~~ 572 (1133)
|+.....+...+.+. ..|.|+|+++|.... + ..||.|+.|+.
T Consensus 142 ~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 142 INKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp TTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 554334444444433 248899999998764 3 34899999975
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.7e-09 Score=116.06 Aligned_cols=78 Identities=21% Similarity=0.207 Sum_probs=49.5
Q ss_pred cccCccEEeeCCCEEEEEcCCCCCHHHHHHHHh-hhc------------CCCCCeEEECCcccCCCChhHHhhccccccc
Q 041277 1019 IFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIE-RFY------------DPLKGDVKIDDRDIRSYHLRSLRRHIALVSQ 1085 (1133)
Q Consensus 1019 vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~-R~y------------dp~~G~I~IdG~dI~~i~l~~LR~~isiV~Q 1085 (1133)
..+++||++++|+.+||+|||||||||++++|. +++ +|..|++ +|++....+.+.++.. +.+
T Consensus 16 ~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~--~g~~~~~~~~~~~~~~---~~~ 90 (231)
T 3lnc_A 16 TQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEK--EGKDYYFVDREEFLRL---CSN 90 (231)
T ss_dssp ------CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCC--BTTTBEECCHHHHHHH---HHT
T ss_pred ccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCcccc--CCCeEEEecHHHhhhh---hhc
Confidence 568999999999999999999999999999999 999 7777765 7777766666665543 346
Q ss_pred ccccccccHHHHhccCC
Q 041277 1086 EPTLFAGTIRENIAYGA 1102 (1133)
Q Consensus 1086 dp~LF~gTIreNI~~g~ 1102 (1133)
+.+++.+++.+|+ ||.
T Consensus 91 ~~~~~~~~~~~~~-~~~ 106 (231)
T 3lnc_A 91 GEIIEHAEVFGNF-YGV 106 (231)
T ss_dssp TCEEEEEEETTEE-EEE
T ss_pred Cceehhhhhcccc-CCC
Confidence 6666666666665 443
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.69 E-value=3.4e-10 Score=117.70 Aligned_cols=141 Identities=21% Similarity=0.191 Sum_probs=76.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccCC-----------CccEEEECCeecCC--CCHHHHhhhceEEecCCCCcc--ccHHH
Q 041277 391 TVALVGGSGSGKSTVIALLQRFYAP-----------LGGEIILDGVSIDK--LQLKWLRSQMGLVSQEPALFA--TSIKE 455 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~~~~-----------~~G~i~~~g~~~~~--~~~~~~r~~i~~v~Q~~~l~~--~ti~e 455 (1133)
.++|+|++|||||||++.+.|...+ ..|+|.++|.++.- ++....++..++++|...-.. -++.|
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 6899999999999999999998765 57999999976531 111111122233333110000 01111
Q ss_pred HHhcCCCCCCHHHHHHHHHHhchHHHHHh-CCCcc-cccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChH
Q 041277 456 NILFGKEDASMEEVIEAAKASNAHNFIRQ-LPQQY-DTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSE 533 (1133)
Q Consensus 456 ni~~~~~~~~~~~~~~~~~~~~~~~~i~~-l~~g~-~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~ 533 (1133)
+... .+.+++....+. +.. -+... --.++.+ ..|..-..+...+||+++.+|+++++| ||++|..
T Consensus 111 ~~~~----~s~~~~~~~~~~------~~~~~~~~~~i~~v~nK-~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~ 177 (191)
T 1oix_A 111 IAKH----LTYENVERWLKE------LRDHADSNIVIMLVGNK-SDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDST 177 (191)
T ss_dssp TTCH----HHHHTHHHHHHH------HHHHSCTTCEEEEEEEC-GGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCT
T ss_pred CcCH----HHHHHHHHHHHH------HHHhcCCCCcEEEEEEC-cccccccccCHHHHHHHHHHcCCEEEE--EeCCCCC
Confidence 1000 001111111110 111 00000 0112221 123222234578899999999999999 9999999
Q ss_pred HHHHHHHHHHH
Q 041277 534 SERVVQEALDK 544 (1133)
Q Consensus 534 ~~~~i~~~l~~ 544 (1133)
+...+.+.|.+
T Consensus 178 ~v~~l~~~l~~ 188 (191)
T 1oix_A 178 NVEAAFQTILT 188 (191)
T ss_dssp THHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 98888887754
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=98.68 E-value=5.9e-09 Score=124.07 Aligned_cols=98 Identities=22% Similarity=0.223 Sum_probs=73.9
Q ss_pred ccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcccccccccccccc--cHH
Q 041277 1018 MIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAG--TIR 1095 (1133)
Q Consensus 1018 ~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~g--TIr 1095 (1133)
.+++++++.+++|+.++|+|||||||||++++|+++++|++|.|.|+|.+--.++ . +.+++++.|++. ..+ |++
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~--~-~~~v~~~~r~~~-~~~~~~~~ 323 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLY--H-ENWIAEVTRTGM-GEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCC--C-SSEEEEECBCCS-SSCCBCHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCC--C-CCeEEEEeeccc-ccCCcCHH
Confidence 4789999999999999999999999999999999999999999999987632222 1 456777777766 332 666
Q ss_pred HHhccC---CC-----CCCCHHHHHHHHHHcc
Q 041277 1096 ENIAYG---AS-----DEIDESEIVEAAKAAN 1119 (1133)
Q Consensus 1096 eNI~~g---~~-----~~~sdeei~~Al~~a~ 1119 (1133)
++++.. +| ++.+++|...+++.++
T Consensus 324 ~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~ 355 (511)
T 2oap_1 324 DLLRAALRQRPDYIIVGEVRGREAQTLFQAMS 355 (511)
T ss_dssp HHHHTTGGGCCSEEEESCCCSTHHHHHHHHHH
T ss_pred HHHHHhhccCCCeEEeCCcCHHHHHHHHHhhc
Confidence 665432 23 2566667777766653
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=8.4e-10 Score=130.03 Aligned_cols=164 Identities=15% Similarity=0.186 Sum_probs=92.6
Q ss_pred ceeEEeeCCCEEEEEcCCCCcHHHHHHHHHh--ccCCCccEEEECCeecCCCCHHHHhh--h-ceEEecCCCCccccHHH
Q 041277 381 DFCLTIPAGKTVALVGGSGSGKSTVIALLQR--FYAPLGGEIILDGVSIDKLQLKWLRS--Q-MGLVSQEPALFATSIKE 455 (1133)
Q Consensus 381 ~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~--~~~~~~G~i~~~g~~~~~~~~~~~r~--~-i~~v~Q~~~l~~~ti~e 455 (1133)
.+++++.++..+.|.|+|||||||+++.|.. ++.++.|++.+.+.|.+......+.. + .+.|.+++. -+.+
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~lPhl~~~Vvtd~~----~a~~ 234 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMK----DAAN 234 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTTCTTBSSSCBCSHH----HHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhccCCcccceeecCHH----HHHH
Confidence 4788999999999999999999999999876 67777788888777766533222211 0 111111110 0111
Q ss_pred HHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHH----------HHHHHHhhCCC-EEEEe
Q 041277 456 NILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRI----------AIARAIIKAPR-ILLLD 524 (1133)
Q Consensus 456 ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri----------~iARal~~~~~-illlD 524 (1133)
.+..-. ...++-.+.++..++.++- +|+..+. ..+||||+||. ++|+++...|. ++++|
T Consensus 235 ~L~~~~--~EmerR~~ll~~~Gv~~i~-----~yn~~~~---~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvID 304 (512)
T 2ius_A 235 ALRWCV--NEMERRYKLMSALGVRNLA-----GYNEKIA---EADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVD 304 (512)
T ss_dssp HHHHHH--HHHHHHHHHHHHTTCSSHH-----HHHHHHH---HHHHTTCCCBCTTC---------CCBCCCCCEEEEEEE
T ss_pred HHHHHH--HHHHHHHHHHHHcCCccHH-----HHHHHHH---HHhhcCCcccccccccccchhccccccccCCcEEEEEe
Confidence 111000 0000111112222111100 1111111 14788888752 46777788898 79999
Q ss_pred CcccCCChHHHHHHHHHHHHH----h-CCCeEEEEecCcc
Q 041277 525 EATSALDSESERVVQEALDKA----V-VGRTTIIIAHRLS 559 (1133)
Q Consensus 525 E~ts~lD~~~~~~i~~~l~~~----~-~~~t~i~itH~~~ 559 (1133)
|+++.+|.. .+.+.+.+.++ + .|.++|++|||++
T Consensus 305 E~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 305 EFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp THHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred CHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 999998843 23344444432 2 2789999999987
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=98.66 E-value=8.7e-09 Score=117.21 Aligned_cols=107 Identities=19% Similarity=0.231 Sum_probs=80.8
Q ss_pred EeEEEECCCCCCCccccCc-cEEeeCCCEEEEEcCCCCCHHHHHHHHhhhc--CCCC----Ce-EEECCcccCCCChhHH
Q 041277 1005 QNVHFAYPARPDVMIFEGF-SIKIEAGKSTALVGQSGSGKSTIIGLIERFY--DPLK----GD-VKIDDRDIRSYHLRSL 1076 (1133)
Q Consensus 1005 ~nVsF~Y~~~~~~~vL~~i-sl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~y--dp~~----G~-I~IdG~dI~~i~l~~L 1076 (1133)
+.+++.++ .|+++ ++.|++|+.++|+||+|||||||++.+++.+ +|++ |+ |+||+.+.- .
T Consensus 111 ~~isTG~~------~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~ 178 (349)
T 1pzn_A 111 GRISTGSK------SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------R 178 (349)
T ss_dssp CEECCSCH------HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------C
T ss_pred CeecCCCH------HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------C
Confidence 34555552 35555 6899999999999999999999999999999 6665 68 999998762 3
Q ss_pred hhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhc
Q 041277 1077 RRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGL 1127 (1133)
Q Consensus 1077 R~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~L 1127 (1133)
++++++++|++.++..|+.+||.+.++ .+.++..+.++. +..++.++
T Consensus 179 ~~~i~~i~q~~~~~~~~v~~ni~~~~~--~~~~~~~~~l~~--~~~~~~~l 225 (349)
T 1pzn_A 179 PERIREIAQNRGLDPDEVLKHIYVARA--FNSNHQMLLVQQ--AEDKIKEL 225 (349)
T ss_dssp HHHHHHHHHTTTCCHHHHGGGEEEEEC--CSHHHHHHHHHH--HHHHHHHS
T ss_pred HHHHHHHHHHcCCCHHHHhhCEEEEec--CChHHHHHHHHH--HHHHHHHh
Confidence 678999999999999999999998743 333344444443 34455544
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=9.9e-09 Score=109.78 Aligned_cols=72 Identities=19% Similarity=0.213 Sum_probs=59.9
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhhhcCC-------CCCeEEECCcccCCCChhHHhhcccccccccccccccHHHHh
Q 041277 1026 KIEAGKSTALVGQSGSGKSTIIGLIERFYDP-------LKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENI 1098 (1133)
Q Consensus 1026 ~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp-------~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI 1098 (1133)
-|++||.++|+||||||||||++.|.+.+.| ..|.|++++.+.. + +++++.++|+..++..|+.||+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~--~----~~~i~~~~~~~~~~~~~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF--R----PERIREIAQNRGLDPDEVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC--C----HHHHHHHHHHTTSCHHHHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC--C----HHHHHHHHHHcCCCHHHHhhcE
Confidence 6999999999999999999999999997766 4458888887631 1 3568888999888888999999
Q ss_pred ccCCC
Q 041277 1099 AYGAS 1103 (1133)
Q Consensus 1099 ~~g~~ 1103 (1133)
.+..+
T Consensus 95 ~~~~~ 99 (231)
T 4a74_A 95 YVARA 99 (231)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 88643
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.65 E-value=7.5e-10 Score=117.26 Aligned_cols=75 Identities=15% Similarity=0.138 Sum_probs=50.9
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCH-------
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQL------- 432 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~------- 432 (1133)
.|+++|++..|+ . ++++++ ++++|+||||||||||+++|+|++.|++|+|.++|.++...+.
T Consensus 9 ~l~l~~~~~~~~---------~-~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 77 (227)
T 1qhl_A 9 SLTLINWNGFFA---------R-TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGL 77 (227)
T ss_dssp EEEEEEETTEEE---------E-EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------C
T ss_pred EEEEEeeecccC---------C-EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccch
Confidence 478888765442 1 566666 8999999999999999999999999999999999998844322
Q ss_pred -HHHhhhceEEecC
Q 041277 433 -KWLRSQMGLVSQE 445 (1133)
Q Consensus 433 -~~~r~~i~~v~Q~ 445 (1133)
...+..++||+|+
T Consensus 78 ~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 78 HGKLKAGVCYSMLD 91 (227)
T ss_dssp GGGBCSSEEEEEEE
T ss_pred hhHhhcCcEEEEEe
Confidence 1235679999984
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.1e-08 Score=107.68 Aligned_cols=54 Identities=22% Similarity=0.234 Sum_probs=46.4
Q ss_pred eeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcccccccccccccccHHHHhc
Q 041277 1027 IEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIA 1099 (1133)
Q Consensus 1027 I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~ 1099 (1133)
.++|++|||+||||||||||+++|.++++|+ | ..+++|+||.+.++.+.++|+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~ 72 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRG 72 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhc
Confidence 5789999999999999999999999999986 4 3577888888888888777763
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=9e-09 Score=104.78 Aligned_cols=30 Identities=33% Similarity=0.362 Sum_probs=28.0
Q ss_pred CccEEeeCCCEEEEEcCCCCCHHHHHHHHh
Q 041277 1022 GFSIKIEAGKSTALVGQSGSGKSTIIGLIE 1051 (1133)
Q Consensus 1022 ~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~ 1051 (1133)
|+||++++||.++|+|||||||||+++++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHS
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHc
Confidence 689999999999999999999999999743
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=98.63 E-value=2.6e-09 Score=110.18 Aligned_cols=54 Identities=24% Similarity=0.287 Sum_probs=49.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhccccccccc
Q 041277 1030 GKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEP 1087 (1133)
Q Consensus 1030 Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp 1087 (1133)
|++++|+||+||||||++++|.++++ ++| |.+||.++.++ ..+|+++++++|+.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~--~~~~~~ig~~~~~~ 54 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEV--RQGGRRIGFDVVTL 54 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEE--ETTSSEEEEEEEET
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchh--HhhhceEEEEEEec
Confidence 79999999999999999999999999 999 99999998654 45799999999985
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.63 E-value=8e-10 Score=117.06 Aligned_cols=75 Identities=16% Similarity=0.184 Sum_probs=52.9
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCC--------
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYH-------- 1072 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~-------- 1072 (1133)
.++++|+...|. . ++++++ +.++|+||||||||||+++|.++..|++|+|.+||.++...+
T Consensus 9 ~l~l~~~~~~~~--------~--~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 77 (227)
T 1qhl_A 9 SLTLINWNGFFA--------R--TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGL 77 (227)
T ss_dssp EEEEEEETTEEE--------E--EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------C
T ss_pred EEEEEeeecccC--------C--EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccch
Confidence 488888865552 1 456666 899999999999999999999999999999999999984433
Q ss_pred hhHHhhcccccccc
Q 041277 1073 LRSLRRHIALVSQE 1086 (1133)
Q Consensus 1073 l~~LR~~isiV~Qd 1086 (1133)
....|.++++|+|+
T Consensus 78 ~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 78 HGKLKAGVCYSMLD 91 (227)
T ss_dssp GGGBCSSEEEEEEE
T ss_pred hhHhhcCcEEEEEe
Confidence 23357889999986
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=1.3e-08 Score=115.60 Aligned_cols=108 Identities=17% Similarity=0.221 Sum_probs=75.6
Q ss_pred EeEEEECCCCCCCccccCccE-------EeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCC-CCeEEECCcccCCCChhHH
Q 041277 1005 QNVHFAYPARPDVMIFEGFSI-------KIEAGKSTALVGQSGSGKSTIIGLIERFYDPL-KGDVKIDDRDIRSYHLRSL 1076 (1133)
Q Consensus 1005 ~nVsF~Y~~~~~~~vL~~isl-------~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~-~G~I~IdG~dI~~i~l~~L 1076 (1133)
.+++|||... ..+.|+++.+ .+++|+.++|+|||||||||++++|.++++|+ +|.|...+.++ ++. +
T Consensus 92 ~~~~iR~~~~-~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~-e~~---~ 166 (356)
T 3jvv_A 92 AGAVFRTIPS-KVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI-EFV---H 166 (356)
T ss_dssp EEEEEEEECC-SCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC-CSC---C
T ss_pred cEEEEEECCC-CCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH-Hhh---h
Confidence 6788998643 3467888887 78899999999999999999999999999997 57776555444 333 3
Q ss_pred hhcccccccccccc-----cccHHHHhccCCC----CCCCHHHHHHHHHH
Q 041277 1077 RRHIALVSQEPTLF-----AGTIRENIAYGAS----DEIDESEIVEAAKA 1117 (1133)
Q Consensus 1077 R~~isiV~Qdp~LF-----~gTIreNI~~g~~----~~~sdeei~~Al~~ 1117 (1133)
+...++|+|.+.-. ...|+.-|+..++ ++.+|.|..+.+..
T Consensus 167 ~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillDEp~d~e~~~~~~~ 216 (356)
T 3jvv_A 167 ESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVGEMRDLETIRLALT 216 (356)
T ss_dssp CCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEESCCCSHHHHHHHHH
T ss_pred hccccceeeeeeccccCCHHHHHHHHhhhCcCEEecCCCCCHHHHHHHHH
Confidence 45677888876533 3345555554321 45667676665433
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.62 E-value=5.1e-08 Score=115.38 Aligned_cols=176 Identities=11% Similarity=0.114 Sum_probs=109.1
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCcc-EEEECCeecCCCCHHHHhhhc-eEEecCCCCccccHHH
Q 041277 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGG-EIILDGVSIDKLQLKWLRSQM-GLVSQEPALFATSIKE 455 (1133)
Q Consensus 378 ~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G-~i~~~g~~~~~~~~~~~r~~i-~~v~Q~~~l~~~ti~e 455 (1133)
.|+++..-+++|+++.|.|++|+|||||+..+++...+..| .|.+-+. +.+...+++++ +....- . .+
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~---E~s~~~l~~r~~~~~~~~------~-~~ 261 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL---EMSAQQLVMRMLCAEGNI------N-AQ 261 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES---SSCHHHHHHHHHHHHHTC------C-HH
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC---CCCHHHHHHHHHHHHcCC------C-HH
Confidence 68888888999999999999999999999999988776555 5655443 23444444432 111000 0 11
Q ss_pred HHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHh--hCCCEEEEeCcccCCChH
Q 041277 456 NILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAII--KAPRILLLDEATSALDSE 533 (1133)
Q Consensus 456 ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~--~~~~illlDE~ts~lD~~ 533 (1133)
.+.-| ..+.++..+..+.. +.+...|- .+.+ ...+|++|.+ +.+|++. .+|+++++|+++.-.+..
T Consensus 262 ~l~~g--~l~~~~~~~~~~a~---~~l~~~~l----~i~d-~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~ 329 (454)
T 2r6a_A 262 NLRTG--KLTPEDWGKLTMAM---GSLSNAGI----YIDD-TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSG 329 (454)
T ss_dssp HHHTS--CCCHHHHHHHHHHH---HHHHSSCE----EEEC-CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSC
T ss_pred HHhcC--CCCHHHHHHHHHHH---HHHhcCCE----EEEC-CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCC
Confidence 23223 23344433222221 22322221 1211 2468999876 5677776 579999999999987532
Q ss_pred --------HHHHHHHHHHHHh--CCCeEEEEec---------C--cc--------hhhc-CCEEEEEeCCeE
Q 041277 534 --------SERVVQEALDKAV--VGRTTIIIAH---------R--LS--------TIRN-ADVIAVVQDGQV 575 (1133)
Q Consensus 534 --------~~~~i~~~l~~~~--~~~t~i~itH---------~--~~--------~~~~-~d~i~~l~~G~i 575 (1133)
....+.+.|+.+. .+.++|+++| + +. .+.+ ||.|++|+.++.
T Consensus 330 ~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 330 RSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp C----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 1234555566553 3899999999 1 32 3444 999999987654
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=98.60 E-value=4e-09 Score=118.72 Aligned_cols=73 Identities=22% Similarity=0.234 Sum_probs=64.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHhhhc--------CCCCCeEEECCcccCCCC---------------hhHHhhccccc---c
Q 041277 1031 KSTALVGQSGSGKSTIIGLIERFY--------DPLKGDVKIDDRDIRSYH---------------LRSLRRHIALV---S 1084 (1133)
Q Consensus 1031 e~vaIVG~SGSGKSTL~~LL~R~y--------dp~~G~I~IdG~dI~~i~---------------l~~LR~~isiV---~ 1084 (1133)
+.++|+|++||||||+++.|++++ .|+.|+|.|||.++...+ ..++++.++.+ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 589999999999999999999998 789999999999998764 45788999988 7
Q ss_pred cccc-cccccHHHHhccCCC
Q 041277 1085 QEPT-LFAGTIRENIAYGAS 1103 (1133)
Q Consensus 1085 Qdp~-LF~gTIreNI~~g~~ 1103 (1133)
|++. .|+.|+.||+.++.|
T Consensus 85 q~~~~~~~~~v~E~~~l~~p 104 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADP 104 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCH
T ss_pred hcCCCCCCEEEEeCCCCCCH
Confidence 9886 478999999988754
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=98.57 E-value=5.7e-09 Score=107.66 Aligned_cols=74 Identities=27% Similarity=0.343 Sum_probs=62.2
Q ss_pred eEEeeCCCEEEEEcCCCCcHHHHHHHHHhccC-------------CCccEEEECCeecCCCCHHHHhhhceEEecCCCCc
Q 041277 383 CLTIPAGKTVALVGGSGSGKSTVIALLQRFYA-------------PLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALF 449 (1133)
Q Consensus 383 ~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~-------------~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~ 449 (1133)
|+...+|++++|+||||||||||++.|++.++ |..|+ ++|.+..-++.+.+++.+ .|+.+++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle 87 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLE 87 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEE
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhh
Confidence 34455899999999999999999999999986 77887 799998888888888876 5889999
Q ss_pred cccHHHHHhcCCC
Q 041277 450 ATSIKENILFGKE 462 (1133)
Q Consensus 450 ~~ti~eni~~~~~ 462 (1133)
.+++.+| .||.+
T Consensus 88 ~~~~~~n-~YGt~ 99 (197)
T 3ney_A 88 FGSYQGN-MFGTK 99 (197)
T ss_dssp EEEETTE-EEEEE
T ss_pred hhhhhce-ecccc
Confidence 9999999 47754
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.56 E-value=3.1e-09 Score=130.38 Aligned_cols=156 Identities=14% Similarity=0.173 Sum_probs=100.4
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCc-cEEEECCeecCCCCHHHHhhhceEEecCC---------
Q 041277 377 IIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLG-GEIILDGVSIDKLQLKWLRSQMGLVSQEP--------- 446 (1133)
Q Consensus 377 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~-G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~--------- 446 (1133)
.+++++++.+++|+.++|+||+|+|||||+++|+++.++.. |.+.+++.+.... ...++++||..
T Consensus 48 ~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-----~p~i~~~p~g~~~~~~e~~~ 122 (604)
T 3k1j_A 48 HAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-----MPRIKTVPACQGRRIVEKYR 122 (604)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-----SCEEEEEETTHHHHHHHHHH
T ss_pred hhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-----CCcEEEEecchHHHHHHHHH
Confidence 48999999999999999999999999999999999999887 8888888765543 23578887754
Q ss_pred -------------CCcc-ccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHH
Q 041277 447 -------------ALFA-TSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIAR 512 (1133)
Q Consensus 447 -------------~l~~-~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iAR 512 (1133)
+.+. .++.+|+..++.......+... ......+.+.... ++. .....+|+|++|++..++
T Consensus 123 ~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~~~~~~~L~G~~~--~~~---~~~g~~~~g~~~~i~~g~ 196 (604)
T 3k1j_A 123 EKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA-TGAHAGALLGDVR--HDP---FQSGGLGTPAHERVEPGM 196 (604)
T ss_dssp HHHHHHTCC-----------CCCEEEECCTTCSSCCEEEC-TTCCHHHHHCEEC--CCC---C----CCCCGGGGEECCH
T ss_pred HhhccchhhhhhcccccccccccceeeccccCCCCCEEEc-CCCCHHhcCceEE--ech---hhcCCccccccccccCce
Confidence 2221 1333344332110000000000 0001111221111 010 112359999999999999
Q ss_pred HHhhCCCEEEEeCcccCCChHHHHHHHHHHHH
Q 041277 513 AIIKAPRILLLDEATSALDSESERVVQEALDK 544 (1133)
Q Consensus 513 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~ 544 (1133)
....++.+|+|||.-. |++.....+.+.|++
T Consensus 197 ~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 197 IHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred eeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 9999999999999988 788887777777754
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=1.2e-08 Score=113.59 Aligned_cols=85 Identities=21% Similarity=0.252 Sum_probs=35.8
Q ss_pred EeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhh-cCCCCCeEEECCcccCCCChhHHhhccccc
Q 041277 1005 QNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERF-YDPLKGDVKIDDRDIRSYHLRSLRRHIALV 1083 (1133)
Q Consensus 1005 ~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~-ydp~~G~I~IdG~dI~~i~l~~LR~~isiV 1083 (1133)
+|++.+|+. ..+++|++|+| +|||++|+|||||++.|++. ..|++| |.++|.++.. +. . ++.++++
T Consensus 2 ~~l~~~~~~---~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t~-~-~~~~~~~ 68 (301)
T 2qnr_A 2 SNLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-TV-Q-IEASTVE 68 (301)
T ss_dssp -------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEE
T ss_pred CCCcceECC---EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-cc-e-EeeEEEE
Confidence 578888953 35899999998 99999999999999999998 788899 9999988754 22 2 4679999
Q ss_pred ccccccc-cccHHHHhccCC
Q 041277 1084 SQEPTLF-AGTIRENIAYGA 1102 (1133)
Q Consensus 1084 ~Qdp~LF-~gTIreNI~~g~ 1102 (1133)
+|++.++ .-||.||..+|.
T Consensus 69 ~q~~~~~~~ltv~Dt~g~~~ 88 (301)
T 2qnr_A 69 IEERGVKLRLTVVDTPGYGD 88 (301)
T ss_dssp EC---CCEEEEEEEEC----
T ss_pred ecCCCcccCcchhhhhhhhh
Confidence 9987654 558999987753
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.49 E-value=4.4e-08 Score=110.47 Aligned_cols=80 Identities=23% Similarity=0.223 Sum_probs=66.8
Q ss_pred cCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhh-----------------------------------------------
Q 041277 1021 EGFSIKIEAGKSTALVGQSGSGKSTIIGLIERF----------------------------------------------- 1053 (1133)
Q Consensus 1021 ~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~----------------------------------------------- 1053 (1133)
+++++++.|| .++|||+||||||||+.+|..+
T Consensus 16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~ 94 (322)
T 1e69_A 16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVA 94 (322)
T ss_dssp SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEE
T ss_pred CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEE
Confidence 3578888999 9999999999999999999843
Q ss_pred ---cCCCCCeEEECCcccCCCChhHHhhcccccccccccc-cccHHHHhccC
Q 041277 1054 ---YDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLF-AGTIRENIAYG 1101 (1133)
Q Consensus 1054 ---ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF-~gTIreNI~~g 1101 (1133)
+.+.+|.+++||.+++.-++..+++.+++.||+..++ .|+|.+|+...
T Consensus 95 r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~ 146 (322)
T 1e69_A 95 RELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNAS 146 (322)
T ss_dssp EEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC-
T ss_pred EEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhcc
Confidence 3445679999999986666777788899999998866 99999999764
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.48 E-value=3.5e-08 Score=103.65 Aligned_cols=85 Identities=18% Similarity=0.124 Sum_probs=53.6
Q ss_pred EEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhccccccccc-----------cccccc
Q 041277 1025 IKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEP-----------TLFAGT 1093 (1133)
Q Consensus 1025 l~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp-----------~LF~gT 1093 (1133)
++|++|+.++|+|+|||||||++++|.+++.|..| +.+ +...+.-. ...+..+++++|++ .++..+
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~-~~i-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK-YSI-SMTTRQMR-EGEVDGVDYFFKTRDAFEALIKDDQFIEYAE 77 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE-CCC-CEECSCCC-TTCCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE-Eec-ccccCCCC-CCccCCCceEEcCHHHHHHHHHcCCeEEEEe
Confidence 46899999999999999999999999999977555 222 22222221 11223467777765 455566
Q ss_pred HHHHhccCCCCCCCHHHHHHHHHH
Q 041277 1094 IRENIAYGASDEIDESEIVEAAKA 1117 (1133)
Q Consensus 1094 IreNI~~g~~~~~sdeei~~Al~~ 1117 (1133)
+++|+ ||. ..+++.++++.
T Consensus 78 ~~~~~-~g~----~~~~i~~~l~~ 96 (207)
T 2j41_A 78 YVGNY-YGT----PVQYVKDTMDE 96 (207)
T ss_dssp ETTEE-EEE----EHHHHHHHHHT
T ss_pred ECCee-cCC----CHHHHHHHHHc
Confidence 66663 542 34567766653
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=2e-08 Score=105.64 Aligned_cols=55 Identities=16% Similarity=0.230 Sum_probs=46.8
Q ss_pred CccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcccccccccccccccHHHHhccC
Q 041277 1022 GFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYG 1101 (1133)
Q Consensus 1022 ~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g 1101 (1133)
++-=++++|+.++|+|++||||||++++|.+.++ .+.+|+||+++|++ +|+.++
T Consensus 13 ~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~---~~~~~~ 66 (207)
T 2qt1_A 13 GLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE---SEIETD 66 (207)
T ss_dssp -CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG---GGSCBC
T ss_pred cccccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH---hHhhcc
Confidence 4445788999999999999999999999999875 48999999999987 777665
Q ss_pred C
Q 041277 1102 A 1102 (1133)
Q Consensus 1102 ~ 1102 (1133)
.
T Consensus 67 ~ 67 (207)
T 2qt1_A 67 K 67 (207)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.44 E-value=3.1e-09 Score=121.26 Aligned_cols=135 Identities=15% Similarity=0.149 Sum_probs=86.6
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHH
Q 041277 377 IIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKEN 456 (1133)
Q Consensus 377 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~en 456 (1133)
.+++++++++++|+.++|+||+|||||||+++|+|.+ +|++...+ .. ...++..+++++|...++ .|+
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~~--~~---~~~~~~~lg~~~q~~~~l----~dd 224 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALNVN--LP---LDRLNFELGVAIDQFLVV----FED 224 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECCS--SC---TTTHHHHHGGGTTCSCEE----ETT
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEEEe--cc---chhHHHHHHHhcchhHHH----HHH
Confidence 4799999999999999999999999999999999965 67776511 11 122333588889887542 222
Q ss_pred HhcCCC------CCCHHHHHHHHHHhchHHHHHh---------CCCccc-----ccccCCCCCCChHHHHHHHHHHHHhh
Q 041277 457 ILFGKE------DASMEEVIEAAKASNAHNFIRQ---------LPQQYD-----TQVGERGVQMSGGQKQRIAIARAIIK 516 (1133)
Q Consensus 457 i~~~~~------~~~~~~~~~~~~~~~~~~~i~~---------l~~g~~-----t~~~~~g~~LSgGqkqri~iARal~~ 516 (1133)
+....+ .... +. ....+.+.+.. .|+..+ -.+..+...+++|++||++.+.+++.
T Consensus 225 ~~~~~~~~r~l~~~~~--~~---~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~ 299 (377)
T 1svm_A 225 VKGTGGESRDLPSGQG--IN---NLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRP 299 (377)
T ss_dssp CCCSTTTTTTCCCCSH--HH---HHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCC
T ss_pred HHHHHHHHhhccccCc--ch---HHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCC
Confidence 222211 0011 10 11122333321 000000 12334556789999999999888899
Q ss_pred CCCEEE-EeCccc
Q 041277 517 APRILL-LDEATS 528 (1133)
Q Consensus 517 ~~~ill-lDE~ts 528 (1133)
+|++++ ||+|+.
T Consensus 300 ~pDLliyLd~~~~ 312 (377)
T 1svm_A 300 KDYLKHCLERSEF 312 (377)
T ss_dssp CHHHHHHHHTCTH
T ss_pred CCCeEEEEeCCHH
Confidence 999888 999997
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=3.8e-08 Score=109.73 Aligned_cols=68 Identities=13% Similarity=0.140 Sum_probs=56.3
Q ss_pred ccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCC-eEEECCcccCCCChhHHhhcccccccccc
Q 041277 1018 MIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKG-DVKIDDRDIRSYHLRSLRRHIALVSQEPT 1088 (1133)
Q Consensus 1018 ~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G-~I~IdG~dI~~i~l~~LR~~isiV~Qdp~ 1088 (1133)
++|+++++.+++|+.++|+||+|||||||++.|.+...|++| .|.+.+.+ .+.+.+++++..+.|+..
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~~ 91 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRVR 91 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCCC
Confidence 379999999999999999999999999999999999999878 78665443 356777777766666543
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=1.2e-07 Score=117.22 Aligned_cols=135 Identities=17% Similarity=0.164 Sum_probs=96.4
Q ss_pred eEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCC--CccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcC
Q 041277 383 CLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP--LGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFG 460 (1133)
Q Consensus 383 ~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~--~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~ 460 (1133)
|+++++|..++|+|++|+|||||++.|++...+ ..|+| .+|.++.+....+.++.+++.+|.+.++..+++.||.-.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDT 81 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDA 81 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEEC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeC
Confidence 457789999999999999999999999988765 67988 788889888888888899999999888776666665421
Q ss_pred CCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHH
Q 041277 461 KEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQE 540 (1133)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~ 540 (1133)
....+ ++ . . ..+..-..++.++++| |+.++|+.+++.+..
T Consensus 82 pG~~~----------------------------------f~-~--~--~~~~l~~ad~~ilVvD-~~~g~~~qt~~~~~~ 121 (665)
T 2dy1_A 82 PGYGD----------------------------------FV-G--E--IRGALEAADAALVAVS-AEAGVQVGTERAWTV 121 (665)
T ss_dssp CCSGG----------------------------------GH-H--H--HHHHHHHCSEEEEEEE-TTTCSCHHHHHHHHH
T ss_pred CCccc----------------------------------hH-H--H--HHHHHhhcCcEEEEEc-CCcccchhHHHHHHH
Confidence 10000 00 0 0 0111113466788888 999999988865544
Q ss_pred HHHHHhCCCeEEEEecCcchh
Q 041277 541 ALDKAVVGRTTIIIAHRLSTI 561 (1133)
Q Consensus 541 ~l~~~~~~~t~i~itH~~~~~ 561 (1133)
+.. .+.++|++.|+++..
T Consensus 122 ~~~---~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 122 AER---LGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHH---TTCCEEEEEECGGGC
T ss_pred HHH---ccCCEEEEecCCchh
Confidence 322 478889999988754
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.39 E-value=2.9e-08 Score=107.01 Aligned_cols=52 Identities=27% Similarity=0.427 Sum_probs=35.5
Q ss_pred cEEEEeE-EEECCCCCCCccccCccEEeeC---CCEEEEEcCCCCCHHHHHHHHhhhc
Q 041277 1001 NIELQNV-HFAYPARPDVMIFEGFSIKIEA---GKSTALVGQSGSGKSTIIGLIERFY 1054 (1133)
Q Consensus 1001 ~I~f~nV-sF~Y~~~~~~~vL~~isl~I~~---Ge~vaIVG~SGSGKSTL~~LL~R~y 1054 (1133)
.++++|| +|+|.+ +.++|+|+||+|++ |++++|+|++||||||+.++|.+.+
T Consensus 17 ~l~~~~~~~~~~~~--~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDE--EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecC--cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 6999999 999932 34699999999999 9999999999999999999999843
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.39 E-value=2.3e-08 Score=102.68 Aligned_cols=70 Identities=19% Similarity=0.218 Sum_probs=52.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhccCC-CccEEE----------ECCeecCCCCHHHHhhhceEEecCCCCccccHHHH
Q 041277 388 AGKTVALVGGSGSGKSTVIALLQRFYAP-LGGEII----------LDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKEN 456 (1133)
Q Consensus 388 ~g~~~~ivG~sGsGKSTll~~l~~~~~~-~~G~i~----------~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~en 456 (1133)
+|++++|+||||||||||+++|++++++ ..|.|. ++|.++...+...+++. +.|+.+++..++.+|
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~n 80 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD---ISNNEYLEYGSHEDA 80 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHH---HHTTCEEEEEEETTE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHH---HHcCCceEEEEEcCc
Confidence 6999999999999999999999999874 445553 35655555666666654 457777888888888
Q ss_pred HhcCC
Q 041277 457 ILFGK 461 (1133)
Q Consensus 457 i~~~~ 461 (1133)
.+|.
T Consensus 81 -~yg~ 84 (180)
T 1kgd_A 81 -MYGT 84 (180)
T ss_dssp -EEEE
T ss_pred -cccc
Confidence 4554
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.39 E-value=4.8e-08 Score=107.34 Aligned_cols=80 Identities=14% Similarity=0.163 Sum_probs=69.4
Q ss_pred ccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhccccccccc-cccc-ccHH
Q 041277 1018 MIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEP-TLFA-GTIR 1095 (1133)
Q Consensus 1018 ~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp-~LF~-gTIr 1095 (1133)
.+++++++++++| ++|+||+|||||||+++|.+...+ |.|.++|.++.+......+++++.++|++ .++. -++.
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~ 109 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF 109 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence 3789999999999 999999999999999999999887 79999999998877778889999999997 3433 3677
Q ss_pred HHhccC
Q 041277 1096 ENIAYG 1101 (1133)
Q Consensus 1096 eNI~~g 1101 (1133)
||+...
T Consensus 110 Deid~~ 115 (274)
T 2x8a_A 110 DEVDAL 115 (274)
T ss_dssp ETCTTT
T ss_pred ehhhhh
Confidence 888654
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=98.38 E-value=3e-08 Score=101.41 Aligned_cols=51 Identities=12% Similarity=0.104 Sum_probs=39.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhccccccccc
Q 041277 1032 STALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEP 1087 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp 1087 (1133)
+++|+||+|||||||+++|.+++. |.++|.+..+......++++++++|++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~ 52 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT 52 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC
Confidence 689999999999999999999995 778888775543225688999999997
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=2.6e-08 Score=104.21 Aligned_cols=64 Identities=23% Similarity=0.375 Sum_probs=52.0
Q ss_pred ccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeE--EECCcccCCCChhHHhhcccccccc
Q 041277 1018 MIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV--KIDDRDIRSYHLRSLRRHIALVSQE 1086 (1133)
Q Consensus 1018 ~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I--~IdG~dI~~i~l~~LR~~isiV~Qd 1086 (1133)
...+..++..++|+.++|+|+|||||||++++|.+.+. ..|.+ ++||.+++. .+++.+++.+|+
T Consensus 13 ~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~~----~~~~~~~~~~~~ 78 (200)
T 3uie_A 13 EKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVRH----GLNRDLSFKAED 78 (200)
T ss_dssp CHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHTT----TTTTTCCSSHHH
T ss_pred CHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhhh----HhhcccCcChHH
Confidence 35688899999999999999999999999999999987 67998 999988864 223444454444
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.5e-07 Score=98.31 Aligned_cols=73 Identities=15% Similarity=0.048 Sum_probs=52.5
Q ss_pred CccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcccccccccccccc-cHHHHhc
Q 041277 1022 GFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAG-TIRENIA 1099 (1133)
Q Consensus 1022 ~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~g-TIreNI~ 1099 (1133)
+-.++.++|+.++|+|++||||||++++|.+.+ |.+.+||.++..- ....+..+++++|++.++.. ++.+|+.
T Consensus 21 ~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 94 (200)
T 4eun_A 21 QSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSP-ENIATMQRGIPLTDEDRWPWLRSLAEWM 94 (200)
T ss_dssp -------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCH-HHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred HhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccH-HHHHHHhcCCCCCCcccccHHHHHHHHH
Confidence 334677899999999999999999999999987 8999999888531 11233468999999876643 5666653
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.36 E-value=1e-07 Score=100.34 Aligned_cols=81 Identities=21% Similarity=0.182 Sum_probs=62.7
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhhhcCC-CCCeEE----------ECCcccCCCChhHHhhcccccccccccccccHHH
Q 041277 1028 EAGKSTALVGQSGSGKSTIIGLIERFYDP-LKGDVK----------IDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRE 1096 (1133)
Q Consensus 1028 ~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp-~~G~I~----------IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIre 1096 (1133)
++|+.++|+|||||||||++++|.+.+++ ..+.+. .+|++...++.+.+++.+ .|+.+++.+++.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~---~~~~~le~~~~~~ 82 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAI---KDGKMLEYAEYVG 82 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHH---hcCcEEEEEEEcc
Confidence 68999999999999999999999999976 222222 578888888888888875 6899999999888
Q ss_pred HhccCCCCCCCHHHHHHHHH
Q 041277 1097 NIAYGASDEIDESEIVEAAK 1116 (1133)
Q Consensus 1097 NI~~g~~~~~sdeei~~Al~ 1116 (1133)
| .||.+ .+++.++++
T Consensus 83 ~-~yg~~----~~~i~~~l~ 97 (208)
T 3tau_A 83 N-YYGTP----LEYVEEKLA 97 (208)
T ss_dssp E-EEEEE----HHHHHHHHH
T ss_pred c-cCCCc----HHHHHHHHH
Confidence 8 46643 334444443
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=2.3e-07 Score=96.73 Aligned_cols=35 Identities=26% Similarity=0.261 Sum_probs=30.2
Q ss_pred HHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHH
Q 041277 508 IAIARAIIKAPRILLLDEATSALDSESERVVQEALDK 544 (1133)
Q Consensus 508 i~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~ 544 (1133)
...||+++.+|++.++| |||+|......+.+.|.+
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~ 164 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILT 164 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHH
Confidence 45699999999999999 999999988877777654
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.34 E-value=1e-06 Score=103.48 Aligned_cols=113 Identities=24% Similarity=0.347 Sum_probs=75.9
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHH
Q 041277 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENI 457 (1133)
Q Consensus 378 ~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni 457 (1133)
.++++++.+++| +.|+||+|+|||||++++++..... +-++ +..+
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~~----------------------f~~i---------s~~~-- 84 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANVP----------------------FFHI---------SGSD-- 84 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTCC----------------------EEEE---------EGGG--
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCCC----------------------eeeC---------CHHH--
Confidence 677888888888 8899999999999999999854210 0001 0000
Q ss_pred hcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCccc---------
Q 041277 458 LFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATS--------- 528 (1133)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts--------- 528 (1133)
+...+ +| .|++++|-.+++|....|.||++||+.+
T Consensus 85 -----------------------~~~~~-------~g------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~ 128 (476)
T 2ce7_A 85 -----------------------FVELF-------VG------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGL 128 (476)
T ss_dssp -----------------------TTTCC-------TT------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC-----
T ss_pred -----------------------HHHHH-------hc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhccccc
Confidence 00000 11 2678999999999999999999999944
Q ss_pred -CCChHHHHHHHHHHHHH-----hCCCeEEEEecCcchh
Q 041277 529 -ALDSESERVVQEALDKA-----VVGRTTIIIAHRLSTI 561 (1133)
Q Consensus 529 -~lD~~~~~~i~~~l~~~-----~~~~t~i~itH~~~~~ 561 (1133)
+.|.+.++.+.+.+..+ ..+..+|.+||+.+.+
T Consensus 129 ~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 129 GGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp ----CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred CcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 56666666665555543 2356788899998654
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=98.33 E-value=4.1e-07 Score=116.49 Aligned_cols=74 Identities=19% Similarity=0.193 Sum_probs=57.4
Q ss_pred ccEEEEe-----EEEECCCCCCCccccCccEEeeC-------CCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcc
Q 041277 1000 GNIELQN-----VHFAYPARPDVMIFEGFSIKIEA-------GKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRD 1067 (1133)
Q Consensus 1000 g~I~f~n-----VsF~Y~~~~~~~vL~~isl~I~~-------Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~d 1067 (1133)
+.|+++| |+++|++ +.+|++|++|++++ |+.++|+||+||||||+++.+ ++..+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~--~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~----------- 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFG--DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV----------- 814 (1022)
T ss_dssp CCEEEEEECCCC------C--CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-----------
T ss_pred ceEEEEeccccEEEEEecC--CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-----------
Confidence 4699999 9999942 34689999999988 999999999999999999999 99863
Q ss_pred cCCCChhHHhhccc-ccccccccccccHHHHh
Q 041277 1068 IRSYHLRSLRRHIA-LVSQEPTLFAGTIRENI 1098 (1133)
Q Consensus 1068 I~~i~l~~LR~~is-iV~Qdp~LF~gTIreNI 1098 (1133)
+.++| +|||++. .-|+.|||
T Consensus 815 ---------~aqiG~~Vpq~~~--~l~v~d~I 835 (1022)
T 2o8b_B 815 ---------MAQMGCYVPAEVC--RLTPIDRV 835 (1022)
T ss_dssp ---------HHTTTCCEESSEE--EECCCSBE
T ss_pred ---------HhheeEEeccCcC--CCCHHHHH
Confidence 45677 9999984 55777776
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=98.32 E-value=7.6e-08 Score=107.39 Aligned_cols=56 Identities=16% Similarity=0.219 Sum_probs=50.7
Q ss_pred CcccEEEEeEEEECCCCCCCcccc--------------CccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcC
Q 041277 998 ITGNIELQNVHFAYPARPDVMIFE--------------GFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYD 1055 (1133)
Q Consensus 998 ~~g~I~f~nVsF~Y~~~~~~~vL~--------------~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~yd 1055 (1133)
.+|.|+|+||+|.||.+ ..+|+ |+++.|.+||+++|||++|+|||||+++|.|+..
T Consensus 130 ~~~ri~Fe~ltp~yP~e--r~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 130 ARNKILFENLTPLHANS--RLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp HTTSCCTTTSCEESCCS--BCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred hcCCceeccccccCCCC--ccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 46899999999999853 45788 8999999999999999999999999999999863
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.29 E-value=1.7e-07 Score=97.93 Aligned_cols=62 Identities=19% Similarity=0.181 Sum_probs=44.9
Q ss_pred eEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCc
Q 041277 383 CLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALF 449 (1133)
Q Consensus 383 ~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~ 449 (1133)
.++.++|++++|+|||||||||++++|.+.+ |.+.++|.++... ....+..+++++|++..+
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~-~~~~~~~~g~~~~~~~~~ 84 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSP-ENIATMQRGIPLTDEDRW 84 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCH-HHHHHHHTTCCCCHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccH-HHHHHHhcCCCCCCcccc
Confidence 3667899999999999999999999999987 9999999877521 112233578888875443
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.28 E-value=2.7e-07 Score=96.26 Aligned_cols=45 Identities=20% Similarity=0.096 Sum_probs=25.1
Q ss_pred ECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhc
Q 041277 1010 AYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFY 1054 (1133)
Q Consensus 1010 ~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~y 1054 (1133)
+||++++.+.++||||++++|+.++|+|++||||||+.+.|.+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 5 HHHSSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 577666778999999999999999999999999999999999876
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=1.5e-07 Score=98.84 Aligned_cols=53 Identities=19% Similarity=0.207 Sum_probs=43.6
Q ss_pred eeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcC
Q 041277 382 FCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFG 460 (1133)
Q Consensus 382 i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~ 460 (1133)
+-=++++|++++|+|++||||||+++.|.+.++ .+.+++||+.++++ +|+.++
T Consensus 14 ~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~---~~~~~~ 66 (207)
T 2qt1_A 14 LVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE---SEIETD 66 (207)
T ss_dssp CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG---GGSCBC
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH---hHhhcc
Confidence 334678899999999999999999999999874 37899999988876 566543
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=98.26 E-value=2.3e-07 Score=103.88 Aligned_cols=81 Identities=20% Similarity=0.201 Sum_probs=65.0
Q ss_pred cccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCCh----hHH-----hhccccc-ccccc
Q 041277 1019 IFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHL----RSL-----RRHIALV-SQEPT 1088 (1133)
Q Consensus 1019 vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l----~~L-----R~~isiV-~Qdp~ 1088 (1133)
++++++|++++|+.++++|++|+||||++..|.+.+.+.+|+|++.+.|+..... ..| |.++.++ +|++.
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~ 173 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLN 173 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTT
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCC
Confidence 3578899999999999999999999999999999999999999999999865432 345 6789999 77655
Q ss_pred cccc-cHHHHhc
Q 041277 1089 LFAG-TIRENIA 1099 (1133)
Q Consensus 1089 LF~g-TIreNI~ 1099 (1133)
+... ++++|+.
T Consensus 174 ~~p~~~~~~~l~ 185 (320)
T 1zu4_A 174 ADPASVVFDAIK 185 (320)
T ss_dssp CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 4433 5677765
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.24 E-value=8.7e-08 Score=98.45 Aligned_cols=66 Identities=18% Similarity=0.205 Sum_probs=47.3
Q ss_pred cceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCe--ecCCCCHH----HHhhhceEEecCC
Q 041277 380 KDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGV--SIDKLQLK----WLRSQMGLVSQEP 446 (1133)
Q Consensus 380 ~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~--~~~~~~~~----~~r~~i~~v~Q~~ 446 (1133)
+++++++.+| +++|+||||||||||+.+|.+++.+..|...-.+. ++-..... ..+..|.+++|+|
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~ 89 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNE 89 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCC
Confidence 7889999999 99999999999999999999998887765432221 11111000 1234689999986
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=6.4e-08 Score=101.18 Aligned_cols=60 Identities=28% Similarity=0.316 Sum_probs=46.3
Q ss_pred EEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEE--EECCeecC
Q 041277 365 CVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI--ILDGVSID 428 (1133)
Q Consensus 365 ~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i--~~~g~~~~ 428 (1133)
|++..+.. ....+..++..++|++++|+|||||||||++++|++.+. ..|.+ ++||.++.
T Consensus 4 ~~~~~~~~---~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 4 NIKWHECS---VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp ------CC---CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred CCcccccc---cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 44544432 336788899999999999999999999999999999987 77988 88886654
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.23 E-value=1.3e-07 Score=101.93 Aligned_cols=52 Identities=29% Similarity=0.392 Sum_probs=35.9
Q ss_pred cEEEEEE-EEEcCCCCCCccccceeEEeeC---CCEEEEEcCCCCcHHHHHHHHHhcc
Q 041277 360 EVEFKCV-QFAYPSRPESIIFKDFCLTIPA---GKTVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 360 ~i~~~~v-~~~y~~~~~~~~l~~i~l~i~~---g~~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
.++++|+ +|+|++ +.++|+|+||+|++ |+.++|+|++||||||+.++|++.+
T Consensus 17 ~l~~~~~~~~~~~~--~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDE--EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecC--cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999 999932 34699999999999 9999999999999999999999865
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=98.23 E-value=2.7e-07 Score=95.35 Aligned_cols=61 Identities=20% Similarity=0.107 Sum_probs=48.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcccccccccccc-cccHHHHhc
Q 041277 1030 GKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLF-AGTIRENIA 1099 (1133)
Q Consensus 1030 Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF-~gTIreNI~ 1099 (1133)
|+.++|+||+||||||+++.|.+ |.+|.+.+||.++... ...++++|++..+ ..|+++|+.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~ 63 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNIT 63 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHH
Confidence 68899999999999999999987 6679999999776442 2568888877543 457888874
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.22 E-value=3e-08 Score=117.19 Aligned_cols=127 Identities=20% Similarity=0.225 Sum_probs=91.9
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCC-Cccc-cHH
Q 041277 377 IIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPA-LFAT-SIK 454 (1133)
Q Consensus 377 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~-l~~~-ti~ 454 (1133)
.+++++++++++| +.|+||+|+|||||+++|++... .|.+.++|.++.+......++++..++|+.. ..+. .+.
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~I 129 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFI 129 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEE
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEE
Confidence 4789999999999 99999999999999999999875 7899999988876555555667888888864 2333 556
Q ss_pred HHHh-cCCCCC-----CHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCccc
Q 041277 455 ENIL-FGKEDA-----SMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATS 528 (1133)
Q Consensus 455 eni~-~~~~~~-----~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts 528 (1133)
|+|. ++.... ..++..+.+ ..++. .|||||+|+..+++|...+|++ ||||.-
T Consensus 130 DEId~l~~~r~~~~~~~~~e~~~~l-----~~LL~---------------~Ldg~~~~~~viviAatn~p~~--LD~aLl 187 (499)
T 2dhr_A 130 DEIDAVGRKRGSGVGGGNDEREQTL-----NQLLV---------------EMDGFEKDTAIVVMAATNRPDI--LDPALL 187 (499)
T ss_dssp ECGGGTCCCSSSSTTTSSHHHHHHH-----HHHHH---------------HGGGCCSSCCCEEEECCSCGGG--SCTTTS
T ss_pred ehHHHHHHhhccCcCCCcHHHHHHH-----HHHHH---------------HhcccccCccEEEEEecCChhh--cCcccc
Confidence 7773 332211 112221211 12222 3789999999999999999987 899876
Q ss_pred C
Q 041277 529 A 529 (1133)
Q Consensus 529 ~ 529 (1133)
.
T Consensus 188 r 188 (499)
T 2dhr_A 188 R 188 (499)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=4.3e-07 Score=112.76 Aligned_cols=84 Identities=13% Similarity=0.200 Sum_probs=61.4
Q ss_pred cccEEEEeEEEECCCC--CCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcC-CCCCeEEECCcccCCCChhH
Q 041277 999 TGNIELQNVHFAYPAR--PDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYD-PLKGDVKIDDRDIRSYHLRS 1075 (1133)
Q Consensus 999 ~g~I~f~nVsF~Y~~~--~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~yd-p~~G~I~IdG~dI~~i~l~~ 1075 (1133)
.+.|++++. ++|-- .+.+|++|+||+ |+.++|+||+||||||+++++.++.. ++.|.+. + .
T Consensus 548 ~~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v----p-------a 611 (765)
T 1ewq_A 548 GDRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV----P-------A 611 (765)
T ss_dssp SSSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB----S-------S
T ss_pred CCcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee----e-------h
Confidence 467999987 66631 235689999999 99999999999999999999999974 6778753 1 1
Q ss_pred Hhhccccccccccccc-ccHHHHhccC
Q 041277 1076 LRRHIALVSQEPTLFA-GTIRENIAYG 1101 (1133)
Q Consensus 1076 LR~~isiV~Qdp~LF~-gTIreNI~~g 1101 (1133)
.+.++++|+| +|. -|++||+..|
T Consensus 612 ~~~~i~~v~~---i~~~~~~~d~l~~g 635 (765)
T 1ewq_A 612 EEAHLPLFDG---IYTRIGASDDLAGG 635 (765)
T ss_dssp SEEEECCCSE---EEEECCC------C
T ss_pred hccceeeHHH---hhccCCHHHHHHhc
Confidence 2567999998 565 4899999776
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=1.6e-07 Score=100.57 Aligned_cols=64 Identities=19% Similarity=0.249 Sum_probs=51.9
Q ss_pred cEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCC------ChhH----Hhhccccccccccccc
Q 041277 1024 SIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSY------HLRS----LRRHIALVSQEPTLFA 1091 (1133)
Q Consensus 1024 sl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i------~l~~----LR~~isiV~Qdp~LF~ 1091 (1133)
+.+.++|+.++|+|++||||||++++|.++ +|+|.++|.|.... .+.. .++.+++++|++.+|.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 87 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLT 87 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHH
Confidence 446689999999999999999999999998 79999999987532 1211 2567999999988764
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=2.7e-07 Score=113.95 Aligned_cols=105 Identities=21% Similarity=0.144 Sum_probs=82.8
Q ss_pred cEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCC--CCCeEEECCcccCCCChhHHhhcccccccccccccccHHHHhccC
Q 041277 1024 SIKIEAGKSTALVGQSGSGKSTIIGLIERFYDP--LKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYG 1101 (1133)
Q Consensus 1024 sl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp--~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g 1101 (1133)
|+++++|.+++|+|++|+|||||++.|.+...+ ..|+| .+|.++.+....+.++.+++++|.+.++.++++.||.-
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliD- 80 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLD- 80 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEE-
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEe-
Confidence 467889999999999999999999999988765 67999 89999999999999999999999999999999999852
Q ss_pred CCCCC-CHHHHHHHHHHcchHHHHhhcccc
Q 041277 1102 ASDEI-DESEIVEAAKAANAHDFIAGLNEG 1130 (1133)
Q Consensus 1102 ~~~~~-sdeei~~Al~~a~l~dfI~~LP~G 1130 (1133)
.|... -..++..+++.++..-++-...+|
T Consensus 81 TpG~~~f~~~~~~~l~~ad~~ilVvD~~~g 110 (665)
T 2dy1_A 81 APGYGDFVGEIRGALEAADAALVAVSAEAG 110 (665)
T ss_dssp CCCSGGGHHHHHHHHHHCSEEEEEEETTTC
T ss_pred CCCccchHHHHHHHHhhcCcEEEEEcCCcc
Confidence 12211 125788888887765444433333
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=98.17 E-value=1.7e-07 Score=101.37 Aligned_cols=68 Identities=15% Similarity=0.147 Sum_probs=56.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHh---hhcCCCCCeEEECCcccCCCChhHHhhccccccccccccc-ccHHHHhcc
Q 041277 1029 AGKSTALVGQSGSGKSTIIGLIE---RFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFA-GTIRENIAY 1100 (1133)
Q Consensus 1029 ~Ge~vaIVG~SGSGKSTL~~LL~---R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~-gTIreNI~~ 1100 (1133)
+++.++|+|++||||||++++|. ++..|+.|+|.++|.+.. ..++..+..++|++.++. .|+.+|+..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~ 97 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMS 97 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 47999999999999999999999 999999999999887642 246677888888887655 488888853
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=98.17 E-value=5.7e-07 Score=100.61 Aligned_cols=68 Identities=21% Similarity=0.289 Sum_probs=55.5
Q ss_pred ccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCH----HHH-----hhhceEE-ecCC
Q 041277 379 FKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQL----KWL-----RSQMGLV-SQEP 446 (1133)
Q Consensus 379 l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~----~~~-----r~~i~~v-~Q~~ 446 (1133)
++++||++++|++++++|++|+||||++..|++.+.+.+|+|.+.+.|+..... ..+ +..+.++ +|.+
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~ 172 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKL 172 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSST
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCC
Confidence 467888899999999999999999999999999999999999998888754321 233 4568888 6654
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.15 E-value=1.4e-06 Score=99.32 Aligned_cols=142 Identities=14% Similarity=0.214 Sum_probs=82.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccC-----------CCccEEEECCeecCCCCHHHHhhhceEEecCCCC----ccccHHH
Q 041277 391 TVALVGGSGSGKSTVIALLQRFYA-----------PLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPAL----FATSIKE 455 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~~~-----------~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l----~~~ti~e 455 (1133)
.++|+|++|||||||++.|.|... |..|.|.++|.++.- ....|++.|.|.- |..| .+
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l------~DT~G~i~~lp~~lve~f~~t-l~ 253 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIML------VDTVGFIRGIPPQIVDAFFVT-LS 253 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEE------EECCCBCSSCCGGGHHHHHHH-HH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEE------EeCCCchhcCCHHHHHHHHHH-HH
Confidence 499999999999999999999765 677999999976532 2246666664431 2222 22
Q ss_pred HHh------cCCC-CCCHHHHHHHHHHhchHHHHHhC--CCcccccccCCCCCCChHHHHHHHHH----HHH-hhCCCEE
Q 041277 456 NIL------FGKE-DASMEEVIEAAKASNAHNFIRQL--PQQYDTQVGERGVQMSGGQKQRIAIA----RAI-IKAPRIL 521 (1133)
Q Consensus 456 ni~------~~~~-~~~~~~~~~~~~~~~~~~~i~~l--~~g~~t~~~~~g~~LSgGqkqri~iA----Ral-~~~~~il 521 (1133)
.+. +-.. .....+..+..+. ..+.+..+ ++----.|+.+...+|+|++||+.++ +++ ..+|++
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~~--~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~- 330 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQS--SFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV- 330 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHHH--HHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE-
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHHH--HHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE-
Confidence 222 1110 0111011111111 11222222 11111223444456788899988887 665 444454
Q ss_pred EEeCcccCCChHHHHHHHHHHHHH
Q 041277 522 LLDEATSALDSESERVVQEALDKA 545 (1133)
Q Consensus 522 llDE~ts~lD~~~~~~i~~~l~~~ 545 (1133)
+|+|++|.+....+.+.|.+.
T Consensus 331 ---~~~SA~~g~gi~~L~~~I~~~ 351 (364)
T 2qtf_A 331 ---IPISALKRTNLELLRDKIYQL 351 (364)
T ss_dssp ---EECBTTTTBSHHHHHHHHHHH
T ss_pred ---EEEECCCCcCHHHHHHHHHHH
Confidence 899999999888888877664
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=98.15 E-value=1.1e-06 Score=94.63 Aligned_cols=80 Identities=19% Similarity=0.265 Sum_probs=58.8
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhh--hcCC-----CCCeEEECCcccC-CCChhHHhhcccccccccccccccHHHH
Q 041277 1026 KIEAGKSTALVGQSGSGKSTIIGLIER--FYDP-----LKGDVKIDDRDIR-SYHLRSLRRHIALVSQEPTLFAGTIREN 1097 (1133)
Q Consensus 1026 ~I~~Ge~vaIVG~SGSGKSTL~~LL~R--~ydp-----~~G~I~IdG~dI~-~i~l~~LR~~isiV~Qdp~LF~gTIreN 1097 (1133)
-+++|+.++|+||+||||||+++.|.+ ...| ..|.+++++.+.- .-.+..+++++++.+|+ +.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhC
Confidence 589999999999999999999999999 4544 5789999998732 11244566788998876 5678
Q ss_pred hccCCCCCCCHHHHHHH
Q 041277 1098 IAYGASDEIDESEIVEA 1114 (1133)
Q Consensus 1098 I~~g~~~~~sdeei~~A 1114 (1133)
+.+..+ .+.++..+.
T Consensus 93 ~~~~~~--~~~~~~~~~ 107 (243)
T 1n0w_A 93 VAYARA--FNTDHQTQL 107 (243)
T ss_dssp EEEEEC--CSHHHHHHH
T ss_pred eEEEec--CCHHHHHHH
Confidence 876533 344444443
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=98.15 E-value=1.7e-07 Score=112.29 Aligned_cols=71 Identities=28% Similarity=0.352 Sum_probs=53.9
Q ss_pred EEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCcc-EEE-ECCeecCC-------CCH---HHHhhhceEEecCCCCccc
Q 041277 384 LTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGG-EII-LDGVSIDK-------LQL---KWLRSQMGLVSQEPALFAT 451 (1133)
Q Consensus 384 l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G-~i~-~~g~~~~~-------~~~---~~~r~~i~~v~Q~~~l~~~ 451 (1133)
..+++|++++|+|+||||||||+++|++.+.|++| ++. +||.++.+ ++. ...++++++++|+.
T Consensus 364 ~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l----- 438 (552)
T 3cr8_A 364 PRERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEI----- 438 (552)
T ss_dssp CGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHH-----
T ss_pred cccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHH-----
Confidence 36789999999999999999999999999999987 784 99977632 122 22445688888862
Q ss_pred cHHHHHhc
Q 041277 452 SIKENILF 459 (1133)
Q Consensus 452 ti~eni~~ 459 (1133)
+..+|+.+
T Consensus 439 ~~~~~ivi 446 (552)
T 3cr8_A 439 TKNRGIAI 446 (552)
T ss_dssp HHTTCEEE
T ss_pred HhcCCEEE
Confidence 34455544
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.15 E-value=2.1e-07 Score=97.87 Aligned_cols=70 Identities=23% Similarity=0.214 Sum_probs=45.3
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHHhccCC-CccEEE----------ECCeecCCCCHHHHhhhceEEecCCCCccccHHH
Q 041277 387 PAGKTVALVGGSGSGKSTVIALLQRFYAP-LGGEII----------LDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKE 455 (1133)
Q Consensus 387 ~~g~~~~ivG~sGsGKSTll~~l~~~~~~-~~G~i~----------~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~e 455 (1133)
++|++++|+|||||||||+++.|++.+++ ..+.+. .+|.+....+...+++.+ .|+.++...++.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~---~~~~~le~~~~~~ 82 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAI---KDGKMLEYAEYVG 82 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHH---hcCcEEEEEEEcc
Confidence 58999999999999999999999999986 333332 234333334444444433 3444555555555
Q ss_pred HHhcC
Q 041277 456 NILFG 460 (1133)
Q Consensus 456 ni~~~ 460 (1133)
| .||
T Consensus 83 ~-~yg 86 (208)
T 3tau_A 83 N-YYG 86 (208)
T ss_dssp E-EEE
T ss_pred c-cCC
Confidence 5 344
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.13 E-value=9.4e-07 Score=92.57 Aligned_cols=61 Identities=15% Similarity=0.107 Sum_probs=40.1
Q ss_pred EEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCC
Q 041277 384 LTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPA 447 (1133)
Q Consensus 384 l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~ 447 (1133)
+++++|++++|+|||||||||++++|.+++.|+.| +.+ +....... ...+..++|++|++.
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~-~~i-~~~~~~~~-~~~~~~~~~~~~~~~ 61 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK-YSI-SMTTRQMR-EGEVDGVDYFFKTRD 61 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE-CCC-CEECSCCC-TTCCBTTTBEECCHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE-Eec-ccccCCCC-CCccCCCceEEcCHH
Confidence 46889999999999999999999999999977655 212 22222111 111234778888754
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=1.4e-06 Score=99.86 Aligned_cols=45 Identities=27% Similarity=0.428 Sum_probs=35.0
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHh--ccCCCccEEEECC
Q 041277 377 IIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQR--FYAPLGGEIILDG 424 (1133)
Q Consensus 377 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~--~~~~~~G~i~~~g 424 (1133)
.+|++++++++ .++|||++|||||||++.|.| +.++..|.+.-..
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p 71 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRP 71 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSC
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcc
Confidence 37899999998 999999999999999999999 6777777665443
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=98.12 E-value=2.2e-07 Score=111.16 Aligned_cols=90 Identities=23% Similarity=0.264 Sum_probs=64.4
Q ss_pred EEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCC-eEE-ECCcccCC-------CCh---hHHhhcccccccccccccc
Q 041277 1025 IKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKG-DVK-IDDRDIRS-------YHL---RSLRRHIALVSQEPTLFAG 1092 (1133)
Q Consensus 1025 l~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G-~I~-IdG~dI~~-------i~l---~~LR~~isiV~Qdp~LF~g 1092 (1133)
..+++|+.++|+|+||||||||+++|.+.+.|++| +|. +||.++.+ ++. ...++++++|+|+.
T Consensus 364 ~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l----- 438 (552)
T 3cr8_A 364 PRERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEI----- 438 (552)
T ss_dssp CGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHH-----
T ss_pred cccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHH-----
Confidence 36889999999999999999999999999999887 784 99987743 222 23567789999983
Q ss_pred cHHHHhccCCC---CCCCHHHHHHHHHHcc
Q 041277 1093 TIRENIAYGAS---DEIDESEIVEAAKAAN 1119 (1133)
Q Consensus 1093 TIreNI~~g~~---~~~sdeei~~Al~~a~ 1119 (1133)
+..+|+.+... .....++++++++..+
T Consensus 439 ~~~~~ivi~~~~~~~~~~r~~~r~lL~~~g 468 (552)
T 3cr8_A 439 TKNRGIAICAPIAPYRQTRRDVRAMIEAVG 468 (552)
T ss_dssp HHTTCEEEECCCCCCHHHHHHHHHHHHTTS
T ss_pred HhcCCEEEEecCCccHHHHHHHHHHHHHcC
Confidence 34556544321 1122345666666554
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.12 E-value=1.4e-05 Score=90.21 Aligned_cols=60 Identities=20% Similarity=0.263 Sum_probs=45.5
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEE-EECCeecCCCCHHHHhhhceEEecCCC
Q 041277 385 TIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI-ILDGVSIDKLQLKWLRSQMGLVSQEPA 447 (1133)
Q Consensus 385 ~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i-~~~g~~~~~~~~~~~r~~i~~v~Q~~~ 447 (1133)
-+++|+++.|.||+|||||||+..+++...+..|.+ ++++.+..+ ..+.+++|+.+|+..
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~---~~ra~rlgv~~~~l~ 117 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALD---PVYAKNLGVDLKSLL 117 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC---HHHHHHHTCCGGGCE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccc---hHHHHHcCCchhhhh
Confidence 478999999999999999999999999988877865 666643221 224456777766543
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.11 E-value=4.8e-07 Score=92.80 Aligned_cols=99 Identities=22% Similarity=0.218 Sum_probs=64.7
Q ss_pred cCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCc--ccCCCChh----HHhhcccccccccc------
Q 041277 1021 EGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDR--DIRSYHLR----SLRRHIALVSQEPT------ 1088 (1133)
Q Consensus 1021 ~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~--dI~~i~l~----~LR~~isiV~Qdp~------ 1088 (1133)
+++++++.+| .++||||||||||||+.+|..+..+..|...-.+. ++-.-... ..+..|.+++|+|.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~ 96 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPID 96 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCCSSSS
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCCcccccC
Confidence 6889999999 99999999999999999999988887776543332 11111110 24567999999863
Q ss_pred ----cccccHHHH----hccCCCCCCCHHHHHHHHHHcchH
Q 041277 1089 ----LFAGTIREN----IAYGASDEIDESEIVEAAKAANAH 1121 (1133)
Q Consensus 1089 ----LF~gTIreN----I~~g~~~~~sdeei~~Al~~a~l~ 1121 (1133)
.+..++..+ +... ....+.+++.+.++.+++.
T Consensus 97 ~~~~~i~r~~~~~~~~~~~i~-g~~~~~~~~~~~l~~~~l~ 136 (182)
T 3kta_A 97 EDEVVIRRRVYPDGRSSYWLN-GRRATRSEILDILTAAMIS 136 (182)
T ss_dssp SSEEEEEEEECTTSCEEEEET-TEEECHHHHHHHHHHTTCC
T ss_pred CcEEEEEEEEEeCCcEEEEEC-CeEcCHHHHHHHHHHcCCC
Confidence 223333221 1111 1124677888888877653
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=1.9e-08 Score=114.21 Aligned_cols=94 Identities=17% Similarity=0.222 Sum_probs=71.7
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCC-------CEEEEEcCCCCCHHHHHHHHhhhc----CCCCCeEEECCcccCC
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAG-------KSTALVGQSGSGKSTIIGLIERFY----DPLKGDVKIDDRDIRS 1070 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~G-------e~vaIVG~SGSGKSTL~~LL~R~y----dp~~G~I~IdG~dI~~ 1070 (1133)
++.++++..|+. ..+++++++.+++| +.++|+||+|+|||||++++.+.. .+.+|.+..+|.|+..
T Consensus 19 lr~~~l~~~~g~---~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~ 95 (334)
T 1in4_A 19 LRPKSLDEFIGQ---ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAA 95 (334)
T ss_dssp TSCSSGGGCCSC---HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHH
T ss_pred cCCccHHHccCc---HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHH
Confidence 334455556642 24889999999887 889999999999999999999998 6778888888877654
Q ss_pred CChhHHhhcccccccccccccccHHHHhc
Q 041277 1071 YHLRSLRRHIALVSQEPTLFAGTIRENIA 1099 (1133)
Q Consensus 1071 i~l~~LR~~isiV~Qdp~LF~gTIreNI~ 1099 (1133)
+....-+..|.+|+|...|+. |+.|++.
T Consensus 96 ~~~~~~~~~v~~iDE~~~l~~-~~~e~L~ 123 (334)
T 1in4_A 96 ILTSLERGDVLFIDEIHRLNK-AVEELLY 123 (334)
T ss_dssp HHHHCCTTCEEEEETGGGCCH-HHHHHHH
T ss_pred HHHHccCCCEEEEcchhhcCH-HHHHHHH
Confidence 321112467999999988876 7888773
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.09 E-value=1.2e-06 Score=91.36 Aligned_cols=45 Identities=20% Similarity=0.140 Sum_probs=25.1
Q ss_pred EcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhcc
Q 041277 369 AYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 369 ~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
+|+.++...+++|+||++++|+.++|+|++||||||+.+.|++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 5 HHHSSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 466555667899999999999999999999999999999999876
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=1.7e-06 Score=99.59 Aligned_cols=71 Identities=24% Similarity=0.282 Sum_probs=53.9
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHH--hhhcCCCC-----CeEEECCccc-CCCChhHHhhcccccccccccccccHHHH
Q 041277 1026 KIEAGKSTALVGQSGSGKSTIIGLI--ERFYDPLK-----GDVKIDDRDI-RSYHLRSLRRHIALVSQEPTLFAGTIREN 1097 (1133)
Q Consensus 1026 ~I~~Ge~vaIVG~SGSGKSTL~~LL--~R~ydp~~-----G~I~IdG~dI-~~i~l~~LR~~isiV~Qdp~LF~gTIreN 1097 (1133)
-|++|+.++|+||+|||||||++.| ....+++. +.|+||+.+. +...+..+++++++.+| ++.+|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen 246 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN 246 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence 5899999999999999999999944 45555533 4899999873 22334456678898877 57889
Q ss_pred hccCCC
Q 041277 1098 IAYGAS 1103 (1133)
Q Consensus 1098 I~~g~~ 1103 (1133)
+.+.++
T Consensus 247 i~~~~~ 252 (400)
T 3lda_A 247 VAYARA 252 (400)
T ss_dssp EEEEEC
T ss_pred EEEecc
Confidence 888653
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.05 E-value=1.2e-06 Score=99.77 Aligned_cols=65 Identities=14% Similarity=0.167 Sum_probs=52.0
Q ss_pred ccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcccccccccccc
Q 041277 1018 MIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLF 1090 (1133)
Q Consensus 1018 ~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF 1090 (1133)
.+|+++|+++++|+.++|+||+||||||++++|.+.+ +|++..- +. +.+.++..++++||...+|
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~--~~---~~~~~~~~lg~~~q~~~~l 221 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALNV--NL---PLDRLNFELGVAIDQFLVV 221 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECC--SS---CTTTHHHHHGGGTTCSCEE
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEEE--ec---cchhHHHHHHHhcchhHHH
Confidence 4899999999999999999999999999999999975 5777651 11 2233455689999998753
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.02 E-value=6.1e-07 Score=98.91 Aligned_cols=89 Identities=15% Similarity=0.141 Sum_probs=72.7
Q ss_pred EEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcccc
Q 041277 1003 ELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIAL 1082 (1133)
Q Consensus 1003 ~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isi 1082 (1133)
+++++...|. +..+++++++++++| ++|+||+|||||||+++|.+... .|.|.++|.++.+......+++++.
T Consensus 51 ~l~~l~~~~~---~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 123 (278)
T 1iy2_A 51 ELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 123 (278)
T ss_dssp HHHHHHHHHH---CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHH
T ss_pred HHHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHH
Confidence 4456666663 235799999999999 99999999999999999999986 7999999998877666777888999
Q ss_pred cccccc-cc-cccHHHHh
Q 041277 1083 VSQEPT-LF-AGTIRENI 1098 (1133)
Q Consensus 1083 V~Qdp~-LF-~gTIreNI 1098 (1133)
++|++. .+ .-++.||+
T Consensus 124 ~~~~~~~~~~~i~~iDei 141 (278)
T 1iy2_A 124 LFETAKRHAPCIVFIDEI 141 (278)
T ss_dssp HHHHHHTSCSEEEEEETH
T ss_pred HHHHHHhcCCcEEehhhh
Confidence 999975 34 34677888
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=6.7e-07 Score=97.17 Aligned_cols=90 Identities=14% Similarity=0.129 Sum_probs=73.4
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhccc
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIA 1081 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~is 1081 (1133)
.+++++...|. +..+++++++++++| ++|+||+|||||||++++.+... .|.|.++|.++.+......+++++
T Consensus 26 ~~l~~l~~~~~---~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~ 98 (254)
T 1ixz_A 26 EELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVR 98 (254)
T ss_dssp HHHHHHHHHHH---CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHH
T ss_pred HHHHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHH
Confidence 45667777673 235799999999999 99999999999999999999886 799999999887766667788899
Q ss_pred ccccccc-cc-cccHHHHh
Q 041277 1082 LVSQEPT-LF-AGTIRENI 1098 (1133)
Q Consensus 1082 iV~Qdp~-LF-~gTIreNI 1098 (1133)
.++|++. .+ .-++.||+
T Consensus 99 ~~~~~~~~~~~~i~~~Dei 117 (254)
T 1ixz_A 99 DLFETAKRHAPCIVFIDEI 117 (254)
T ss_dssp HHHHHHTTSSSEEEEEETH
T ss_pred HHHHHHHhcCCeEEEehhh
Confidence 9999874 33 34567777
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.99 E-value=2.3e-06 Score=89.68 Aligned_cols=70 Identities=17% Similarity=0.157 Sum_probs=44.3
Q ss_pred CChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchh---hcCCEEEEEeC
Q 041277 500 MSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTI---RNADVIAVVQD 572 (1133)
Q Consensus 500 LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~---~~~d~i~~l~~ 572 (1133)
.+.|+.+|..+++.+..+|+.+-.+ .+.++|...+.+.+.+... .+.++|+-+|.+... ..||.+++++-
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~-~~~~vv~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ-TAPYTLFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC-CSSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc-CCCEEEEEechhhhcCcHhhCCEEEEEEC
Confidence 4688999999999999888754333 3455666666666555433 356888888877553 45999999863
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=97.95 E-value=1.4e-06 Score=93.07 Aligned_cols=67 Identities=18% Similarity=0.057 Sum_probs=54.2
Q ss_pred ccccCccE-EeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhh---ccccccccc
Q 041277 1018 MIFEGFSI-KIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRR---HIALVSQEP 1087 (1133)
Q Consensus 1018 ~vL~~isl-~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~---~isiV~Qdp 1087 (1133)
+.|+++.. .+++|+.++|+||+||||||+++.+.+...+++|.+.+.+.+. +.+.+++ .+++.+|+.
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~ 80 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEY 80 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGG
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHH
Confidence 47899998 8999999999999999999999999998888889998877655 3344333 467766654
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=5.2e-07 Score=96.43 Aligned_cols=64 Identities=20% Similarity=0.198 Sum_probs=48.6
Q ss_pred eEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCC------CHHH----HhhhceEEecCCCCcc
Q 041277 383 CLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKL------QLKW----LRSQMGLVSQEPALFA 450 (1133)
Q Consensus 383 ~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~------~~~~----~r~~i~~v~Q~~~l~~ 450 (1133)
+.+.++|++++|+|++||||||++++|.++ .|+|.+.+.+.... .... .++.+++++|++.++.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 87 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLT 87 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHH
Confidence 345679999999999999999999999998 78999998876421 1211 1456788888765543
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=4.5e-06 Score=84.88 Aligned_cols=56 Identities=18% Similarity=0.203 Sum_probs=44.0
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhh-ccccccccccc
Q 041277 1028 EAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRR-HIALVSQEPTL 1089 (1133)
Q Consensus 1028 ~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~-~isiV~Qdp~L 1089 (1133)
.+|+.++|+|++||||||+++.|.+.+ |.+.+|+.++.. ...+++ .++.++|++..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~~--~~~~~~~~~g~~~~~~~~ 62 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLHP--RRNIEKMASGEPLNDDDR 62 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGCC--HHHHHHHHTTCCCCHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccccc--hHHHHHhhcCcCCCcccc
Confidence 468999999999999999999999876 889999988753 223333 57777776543
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=97.91 E-value=1.2e-05 Score=100.88 Aligned_cols=66 Identities=17% Similarity=0.130 Sum_probs=51.6
Q ss_pred CCCChHHHHHHHHHHHHhhCCCEEEEeCccc-CCChHHHHHHHHHHHHHhC-CCeEEE-EecCcchhhc
Q 041277 498 VQMSGGQKQRIAIARAIIKAPRILLLDEATS-ALDSESERVVQEALDKAVV-GRTTII-IAHRLSTIRN 563 (1133)
Q Consensus 498 ~~LSgGqkqri~iARal~~~~~illlDE~ts-~lD~~~~~~i~~~l~~~~~-~~t~i~-itH~~~~~~~ 563 (1133)
.-+|+|+.+|..++++++.+++++|+|||.. ++|.+....+.+.+....+ .+++++ .||+.+.+..
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~ 257 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQR 257 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHH
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHH
Confidence 4579999999999999999999999999997 8998766555555555443 466766 4898776543
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=97.89 E-value=1.6e-06 Score=96.78 Aligned_cols=58 Identities=17% Similarity=0.250 Sum_probs=51.1
Q ss_pred ccccccEEEEEEEEEcCCCCCCcccc--------------ceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccC
Q 041277 355 ENVLGEVEFKCVQFAYPSRPESIIFK--------------DFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYA 414 (1133)
Q Consensus 355 ~~~~~~i~~~~v~~~y~~~~~~~~l~--------------~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~ 414 (1133)
+...+.+.|+|++|.||.. +.+|+ |+++.+.+||.++|+||+|+|||||++.|.++..
T Consensus 128 e~~~~ri~Fe~ltp~yP~e--r~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 128 ENARNKILFENLTPLHANS--RLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp HHHTTSCCTTTSCEESCCS--BCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred hhhcCCceeccccccCCCC--ccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 3346789999999999864 45788 8999999999999999999999999999999763
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=1.3e-05 Score=90.24 Aligned_cols=29 Identities=24% Similarity=0.266 Sum_probs=26.2
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHHhcc
Q 041277 385 TIPAGKTVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 385 ~i~~g~~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
-+++|+++.|.||+|||||||+..++...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 58899999999999999999999888653
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.85 E-value=2.1e-05 Score=89.90 Aligned_cols=60 Identities=13% Similarity=0.113 Sum_probs=47.1
Q ss_pred CCCChHHHHHHHHHHHHhhCCCEEEEe-CcccCCChHHHHHHHHHHHHHhCCCeEEEEe--cCc
Q 041277 498 VQMSGGQKQRIAIARAIIKAPRILLLD-EATSALDSESERVVQEALDKAVVGRTTIIIA--HRL 558 (1133)
Q Consensus 498 ~~LSgGqkqri~iARal~~~~~illlD-E~ts~lD~~~~~~i~~~l~~~~~~~t~i~it--H~~ 558 (1133)
..+|+|++|++. +.+...++-++++| ++.+++|.+....+.+.+.....++.+|+|. ||+
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl 292 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDV 292 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTT
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECccc
Confidence 468999999887 66556777889999 9999999988777777776655578888888 554
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=97.83 E-value=1.3e-05 Score=79.10 Aligned_cols=47 Identities=19% Similarity=0.209 Sum_probs=41.7
Q ss_pred cccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCC--eEEECCcccCCC
Q 041277 1019 IFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKG--DVKIDDRDIRSY 1071 (1133)
Q Consensus 1019 vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G--~I~IdG~dI~~i 1071 (1133)
+|+++ +|+.++|+||+|||||||++++.+.+.+ +| .+++++.++..-
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~ 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH
Confidence 57777 9999999999999999999999999987 58 899999887654
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=97.83 E-value=6.7e-05 Score=83.97 Aligned_cols=102 Identities=13% Similarity=0.164 Sum_probs=67.5
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHH
Q 041277 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENI 457 (1133)
Q Consensus 378 ~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni 457 (1133)
-|+.+.--+++|+++.|.|++|+|||||+.-++.......+. +.|++=|
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~-------------------Vl~fSlE------------ 83 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRG-------------------VAVFSLE------------ 83 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCE-------------------EEEEESS------------
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCe-------------------EEEEeCC------------
Confidence 466666678999999999999999999998887654332222 3333211
Q ss_pred hcCCCCCCHHHHHH----HHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCC
Q 041277 458 LFGKEDASMEEVIE----AAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSAL 530 (1133)
Q Consensus 458 ~~~~~~~~~~~~~~----~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~l 530 (1133)
.+.+++.. +.....++.... ..||++++||++.|...+.+++++|.|+|...+
T Consensus 84 ------ms~~ql~~Rlls~~~~v~~~~l~~--------------g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si 140 (338)
T 4a1f_A 84 ------MSAEQLALRALSDLTSINMHDLES--------------GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRI 140 (338)
T ss_dssp ------SCHHHHHHHHHHHHHCCCHHHHHH--------------TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCH
T ss_pred ------CCHHHHHHHHHHHhhCCCHHHHhc--------------CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcH
Confidence 22233222 111122222111 269999999999999999999999999986543
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=5.2e-06 Score=84.38 Aligned_cols=53 Identities=25% Similarity=0.266 Sum_probs=40.2
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhh-hceEEecC
Q 041277 387 PAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRS-QMGLVSQE 445 (1133)
Q Consensus 387 ~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~-~i~~v~Q~ 445 (1133)
.+|++++|+|++||||||+++.|.+.+ |.+.+++.++.. ...+++ .+|+.+|+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~~--~~~~~~~~~g~~~~~ 59 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLHP--RRNIEKMASGEPLND 59 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGCC--HHHHHHHHTTCCCCH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccccc--hHHHHHhhcCcCCCc
Confidence 468999999999999999999999976 889999876643 122222 45666654
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=3.6e-06 Score=93.25 Aligned_cols=63 Identities=19% Similarity=0.133 Sum_probs=54.9
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCC
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSY 1071 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i 1071 (1133)
+.++++++.|+.. . ++++|+ +|+.++++|++|+||||++..|.+++.+..|+|.+.+.|++.-
T Consensus 77 ~~~~~l~~~~~~~---~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~ 139 (295)
T 1ls1_A 77 TVYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRP 139 (295)
T ss_dssp HHHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCH
T ss_pred HHHHHHHHHHCCC---C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccH
Confidence 6677888889532 1 688888 9999999999999999999999999999999999999998753
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.78 E-value=6.6e-06 Score=85.79 Aligned_cols=47 Identities=19% Similarity=0.093 Sum_probs=40.8
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCC
Q 041277 1026 KIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYH 1072 (1133)
Q Consensus 1026 ~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~ 1072 (1133)
..++|+.+||+|++||||||+++.|.+++.+.+|.|.+.|.|....+
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~ 64 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVE 64 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCC
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCC
Confidence 46789999999999999999999999999988999988777754443
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.78 E-value=4.2e-05 Score=88.35 Aligned_cols=160 Identities=20% Similarity=0.200 Sum_probs=91.4
Q ss_pred EEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHH-HhhhceEE
Q 041277 364 KCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKW-LRSQMGLV 442 (1133)
Q Consensus 364 ~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~-~r~~i~~v 442 (1133)
++++..|+... ++++|+ +|++++++|++||||||++..|++.+.+..|+|.+.+.|+......+ ++.. +
T Consensus 80 ~~L~~~~~~~~-----~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~-~-- 149 (425)
T 2ffh_A 80 EALKEALGGEA-----RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLL-G-- 149 (425)
T ss_dssp HHHHHHTTSSC-----CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHH-H--
T ss_pred HHHHHHhCCCc-----ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHh-c--
Confidence 44555665321 567887 89999999999999999999999999999999999887765432221 2110 0
Q ss_pred ecCCCCccccHHHHHhc--CCCCCCHHHHHHHHHHhchHHHHHhC-CCcccccccCCCCCCC---hHHHHHHHHHHHHhh
Q 041277 443 SQEPALFATSIKENILF--GKEDASMEEVIEAAKASNAHNFIRQL-PQQYDTQVGERGVQMS---GGQKQRIAIARAIIK 516 (1133)
Q Consensus 443 ~Q~~~l~~~ti~eni~~--~~~~~~~~~~~~~~~~~~~~~~i~~l-~~g~~t~~~~~g~~LS---gGqkqri~iARal~~ 516 (1133)
-..|+.+ ..+..+..++.. +.++.+ .++||..+=+.+..++ .-..+...+++++..
T Consensus 150 ----------~~~gv~v~~~~~~~~p~~i~~--------~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~p 211 (425)
T 2ffh_A 150 ----------EKVGVPVLEVMDGESPESIRR--------RVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGP 211 (425)
T ss_dssp ----------HHHTCCEEECCTTCCHHHHHH--------HHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCC
T ss_pred ----------ccCCccEEecCCCCCHHHHHH--------HHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCC
Confidence 0111111 011122333311 122222 2466655544333332 346677788888866
Q ss_pred CCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEec
Q 041277 517 APRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAH 556 (1133)
Q Consensus 517 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH 556 (1133)
++-++++| ++++.|.... + +.+.+ .-+.+-+++|+
T Consensus 212 d~vlLVvD-a~tgq~av~~--a-~~f~~-~l~i~GVIlTK 246 (425)
T 2ffh_A 212 DEVLLVLD-AMTGQEALSV--A-RAFDE-KVGVTGLVLTK 246 (425)
T ss_dssp SEEEEEEE-GGGTTHHHHH--H-HHHHH-HTCCCEEEEES
T ss_pred ceEEEEEe-ccchHHHHHH--H-HHHHh-cCCceEEEEeC
Confidence 66677777 5666554322 1 22222 12456677775
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.67 E-value=5.7e-05 Score=87.32 Aligned_cols=40 Identities=33% Similarity=0.402 Sum_probs=35.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeec
Q 041277 388 AGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSI 427 (1133)
Q Consensus 388 ~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~ 427 (1133)
++.+++++||+||||||++..|++.+.+..++|.+-+.|.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 5789999999999999999999999998888888766554
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.65 E-value=1.4e-05 Score=83.24 Aligned_cols=47 Identities=17% Similarity=0.137 Sum_probs=40.0
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCC
Q 041277 385 TIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQ 431 (1133)
Q Consensus 385 ~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~ 431 (1133)
..++|++++|+|+|||||||+++.|.+.+++..|.|.+.+.|....+
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~ 64 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVE 64 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCC
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCC
Confidence 35689999999999999999999999999998999988766654433
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=9.3e-06 Score=82.88 Aligned_cols=54 Identities=26% Similarity=0.427 Sum_probs=40.9
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCC--eEEECCcccCCCChhHHhhcccccccc
Q 041277 1028 EAGKSTALVGQSGSGKSTIIGLIERFYDPLKG--DVKIDDRDIRSYHLRSLRRHIALVSQE 1086 (1133)
Q Consensus 1028 ~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G--~I~IdG~dI~~i~l~~LR~~isiV~Qd 1086 (1133)
++|+.++|+|++||||||++++|.+.+.+ .| .|.+||.+++.. ++..+++.+|+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~~~~----~~~~~~~~~~~ 58 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNIRQG----LNKNLGFSPED 58 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHTTT----TTTTCCSSHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHHHHH----Hhhcccccccc
Confidence 47999999999999999999999998876 57 788888777541 23344555444
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.65 E-value=1.3e-05 Score=89.21 Aligned_cols=56 Identities=16% Similarity=0.188 Sum_probs=42.5
Q ss_pred ccccCccEEeeCCC------EEEEEcCCCCCHHHHHHHHhhhcC--CCCCeEEECCcccCCCCh
Q 041277 1018 MIFEGFSIKIEAGK------STALVGQSGSGKSTIIGLIERFYD--PLKGDVKIDDRDIRSYHL 1073 (1133)
Q Consensus 1018 ~vL~~isl~I~~Ge------~vaIVG~SGSGKSTL~~LL~R~yd--p~~G~I~IdG~dI~~i~l 1073 (1133)
..|++++..+.+++ .+||+|+|||||||++++|.++++ |++|.+.+-+.|--.++.
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~~ 137 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYSN 137 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCH
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccccch
Confidence 36778888887776 899999999999999999999998 456775544444333333
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.60 E-value=1.5e-05 Score=88.77 Aligned_cols=44 Identities=16% Similarity=0.263 Sum_probs=36.9
Q ss_pred ccccceeEEeeCCC------EEEEEcCCCCcHHHHHHHHHhccC--CCccEE
Q 041277 377 IIFKDFCLTIPAGK------TVALVGGSGSGKSTVIALLQRFYA--PLGGEI 420 (1133)
Q Consensus 377 ~~l~~i~l~i~~g~------~~~ivG~sGsGKSTll~~l~~~~~--~~~G~i 420 (1133)
..|++++..+.+++ ++||+|||||||||++++|.+++. |++|.+
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v 125 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNV 125 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCE
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeE
Confidence 36788888887776 999999999999999999999987 455543
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=97.59 E-value=1.5e-05 Score=92.01 Aligned_cols=34 Identities=21% Similarity=0.344 Sum_probs=32.5
Q ss_pred ccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhh
Q 041277 1020 FEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERF 1053 (1133)
Q Consensus 1020 L~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ 1053 (1133)
-++++|++++|+.|||||++|||||||++.|.+.
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence 3799999999999999999999999999999987
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=3.2e-05 Score=81.51 Aligned_cols=57 Identities=18% Similarity=0.124 Sum_probs=43.7
Q ss_pred ccccCccE-EeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhh
Q 041277 1018 MIFEGFSI-KIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRR 1078 (1133)
Q Consensus 1018 ~vL~~isl-~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~ 1078 (1133)
+.|+++.. -+++|+.++|+||+||||||+++.+.+ .+..+.+++++.+ ..+.+.+++
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~--~~~~~~~~~ 64 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG--GFSPERLVQ 64 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC--CCCHHHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC--CCCHHHHHH
Confidence 35677765 799999999999999999999999999 4455667777654 234555544
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=97.58 E-value=2e-05 Score=87.40 Aligned_cols=48 Identities=21% Similarity=0.295 Sum_probs=42.9
Q ss_pred ccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCC
Q 041277 1023 FSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRS 1070 (1133)
Q Consensus 1023 isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~ 1070 (1133)
++++.++|+.++|||++||||||++..|.+++.+++|+|.+.+.|+..
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r 144 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR 144 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc
Confidence 355577899999999999999999999999999999999999888754
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=3.9e-05 Score=90.04 Aligned_cols=67 Identities=19% Similarity=0.291 Sum_probs=43.8
Q ss_pred hCCCEEEEeCcccCCCh-HHHHHHHHHHHHHh-CCCeEEEEecCc-chhhc-CCEEEE-EeCCeEEeecCcc
Q 041277 516 KAPRILLLDEATSALDS-ESERVVQEALDKAV-VGRTTIIIAHRL-STIRN-ADVIAV-VQDGQVMETGSHD 582 (1133)
Q Consensus 516 ~~~~illlDE~ts~lD~-~~~~~i~~~l~~~~-~~~t~i~itH~~-~~~~~-~d~i~~-l~~G~i~~~g~~~ 582 (1133)
.+|++|++||+..-.+. .++..+...+.... .++.+|++||+. ..+.. .+++.- ++.|.+++.+.++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~ 264 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCC
Confidence 38999999999887765 56777778777654 578899999984 33322 222222 3456665555443
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.55 E-value=0.0003 Score=81.01 Aligned_cols=44 Identities=16% Similarity=0.118 Sum_probs=32.6
Q ss_pred hCCCEEEEeCcccCCChHHHHHHHHHHHHHh----CCCeEEEEecCcch
Q 041277 516 KAPRILLLDEATSALDSESERVVQEALDKAV----VGRTTIIIAHRLST 560 (1133)
Q Consensus 516 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~----~~~t~i~itH~~~~ 560 (1133)
.+|.++++||+... |......+.+.+.+.. .+.++|+++|+.+.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~ 171 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAV 171 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchH
Confidence 45789999999876 8777777776665443 36678888998754
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.54 E-value=3.2e-05 Score=88.19 Aligned_cols=56 Identities=25% Similarity=0.263 Sum_probs=35.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhh-hcCCCCCeEEECCcccCCCChhHHhhccccccccccc
Q 041277 1032 STALVGQSGSGKSTIIGLIER-FYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTL 1089 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R-~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~L 1089 (1133)
.+.|+||+|+||||++++|.+ ++.|+.|.|.++|.+...... -+..+++++|++++
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~--~~~~~~~~~~~~~~ 94 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN--RKLELNVVSSPYHL 94 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc--ccceeeeecccceE
Confidence 499999999999999999999 899999999999998765333 37889999999876
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=97.54 E-value=1.5e-05 Score=82.36 Aligned_cols=37 Identities=27% Similarity=0.460 Sum_probs=32.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcCC-----------CCCeEEECCccc
Q 041277 1032 STALVGQSGSGKSTIIGLIERFYDP-----------LKGDVKIDDRDI 1068 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~ydp-----------~~G~I~IdG~dI 1068 (1133)
+++|||++|||||||++.|.+...+ ..|+|.+||.++
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 78 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 78 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEE
Confidence 7899999999999999999998654 478999999765
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=2.8e-05 Score=97.18 Aligned_cols=85 Identities=15% Similarity=0.212 Sum_probs=54.3
Q ss_pred ccEEEEeEEEECCCC----CCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCC-CCCeEEECCcccCCCChh
Q 041277 1000 GNIELQNVHFAYPAR----PDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDP-LKGDVKIDDRDIRSYHLR 1074 (1133)
Q Consensus 1000 g~I~f~nVsF~Y~~~----~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp-~~G~I~IdG~dI~~i~l~ 1074 (1133)
+.|++++. ++|-- .+..|++|+||+ ++|+.++|+||+||||||+++++.++.-+ +.| ..+..
T Consensus 576 ~~i~i~~~--rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G------~~vpa---- 642 (800)
T 1wb9_A 576 PGIRITEG--RHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIG------SYVPA---- 642 (800)
T ss_dssp SCEEEEEE--CCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTT------CCBSS----
T ss_pred CCEEEEec--cccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcC------cccch----
Confidence 45777764 55520 234689999999 99999999999999999999999998532 333 12211
Q ss_pred HHhhccccccccccccc-ccHHHHhccC
Q 041277 1075 SLRRHIALVSQEPTLFA-GTIRENIAYG 1101 (1133)
Q Consensus 1075 ~LR~~isiV~Qdp~LF~-gTIreNI~~g 1101 (1133)
-+..+++++| +|. -++.||+..+
T Consensus 643 -~~~~i~~~~~---i~~~~~~~d~l~~~ 666 (800)
T 1wb9_A 643 -QKVEIGPIDR---IFTRVGAADDLASG 666 (800)
T ss_dssp -SEEEECCCCE---EEEEEC--------
T ss_pred -hcccceeHHH---HHhhCCHHHHHHhh
Confidence 1356888887 454 3788998765
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=1e-05 Score=85.62 Aligned_cols=70 Identities=16% Similarity=0.160 Sum_probs=52.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhhhc---CCCCCeE--------EECCcccCCCC-hhHHhhcccccc------ccccccc
Q 041277 1030 GKSTALVGQSGSGKSTIIGLIERFY---DPLKGDV--------KIDDRDIRSYH-LRSLRRHIALVS------QEPTLFA 1091 (1133)
Q Consensus 1030 Ge~vaIVG~SGSGKSTL~~LL~R~y---dp~~G~I--------~IdG~dI~~i~-l~~LR~~isiV~------Qdp~LF~ 1091 (1133)
.-.++|+||+||||||+.+.|.+.+ -.+.|.+ .-.|+|..+.. +..+.+++.+++ |+.+|+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~g 88 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLAG 88 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEECC
Confidence 3489999999999999999998543 3455665 34577776653 566777777776 6677888
Q ss_pred ccHHHHhc
Q 041277 1092 GTIRENIA 1099 (1133)
Q Consensus 1092 gTIreNI~ 1099 (1133)
..|.+||+
T Consensus 89 ~~v~~~ir 96 (233)
T 3r20_A 89 EDVSSEIR 96 (233)
T ss_dssp EECTTGGG
T ss_pred eehhhhhc
Confidence 78888873
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=97.48 E-value=2.2e-05 Score=81.93 Aligned_cols=66 Identities=15% Similarity=0.189 Sum_probs=45.5
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhhhcCC-CCCeE----------EECCcccCCCChhHHhhcccccccccccccccH
Q 041277 1026 KIEAGKSTALVGQSGSGKSTIIGLIERFYDP-LKGDV----------KIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTI 1094 (1133)
Q Consensus 1026 ~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp-~~G~I----------~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTI 1094 (1133)
+..+|..++|+|+|||||||+++.|.+.++. ..+.+ .+||.|..-++.+.+++.+ .|+.+++.+..
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~ 84 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKL---KEGQFLEFDKY 84 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHH---HTTCEEEEEEE
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHH---HcCCCEEeHHh
Confidence 4578999999999999999999999987742 11111 2478787777877776543 34444444433
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.47 E-value=5.8e-05 Score=89.17 Aligned_cols=89 Identities=15% Similarity=0.150 Sum_probs=70.4
Q ss_pred EEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcccc
Q 041277 1003 ELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIAL 1082 (1133)
Q Consensus 1003 ~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isi 1082 (1133)
+++++...|. ++.+++++++++++| +.|+||+|+|||||++++.+... .|.|.++|.++.+......++++..
T Consensus 42 ~l~~lv~~l~---~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~ 114 (499)
T 2dhr_A 42 ELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 114 (499)
T ss_dssp HHHHHHHHHH---CGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHH
T ss_pred HHHHHHHHhh---chhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHH
Confidence 4445544453 224789999999999 99999999999999999999875 6899999999987777777888989
Q ss_pred cccccc-cccc-cHHHHh
Q 041277 1083 VSQEPT-LFAG-TIRENI 1098 (1133)
Q Consensus 1083 V~Qdp~-LF~g-TIreNI 1098 (1133)
++|++. .+.+ .+-|||
T Consensus 115 lfq~a~~~~p~il~IDEI 132 (499)
T 2dhr_A 115 LFETAKRHAPCIVFIDEI 132 (499)
T ss_dssp HTTTSSSSSSCEEEEECG
T ss_pred HHHHHHhcCCCEEEEehH
Confidence 999875 3322 456777
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00014 Score=82.47 Aligned_cols=28 Identities=18% Similarity=0.097 Sum_probs=26.0
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHHhc
Q 041277 385 TIPAGKTVALVGGSGSGKSTVIALLQRF 412 (1133)
Q Consensus 385 ~i~~g~~~~ivG~sGsGKSTll~~l~~~ 412 (1133)
-+++|+++.|.||+|||||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999999998875
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=5.1e-05 Score=78.69 Aligned_cols=55 Identities=22% Similarity=0.364 Sum_probs=38.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc-----CCC------CCeEEECCcccC----CC-ChhHHhhcccccccc
Q 041277 1032 STALVGQSGSGKSTIIGLIERFY-----DPL------KGDVKIDDRDIR----SY-HLRSLRRHIALVSQE 1086 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~y-----dp~------~G~I~IdG~dI~----~i-~l~~LR~~isiV~Qd 1086 (1133)
+++|||++|||||||++.|.+.. .|+ .|+|.+||.++. +. ..+..|+......|+
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~ 77 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRG 77 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTT
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhc
Confidence 68999999999999999999973 243 578999997652 22 234444444444444
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.37 E-value=5.3e-05 Score=85.89 Aligned_cols=42 Identities=21% Similarity=0.248 Sum_probs=37.5
Q ss_pred ccccceeEEeeCCCE--EEEEcCCCCcHHHHHHHHHhccCCCcc
Q 041277 377 IIFKDFCLTIPAGKT--VALVGGSGSGKSTVIALLQRFYAPLGG 418 (1133)
Q Consensus 377 ~~l~~i~l~i~~g~~--~~ivG~sGsGKSTll~~l~~~~~~~~G 418 (1133)
.+++.++..++.|+. +.+.||+|+||||+++++++.+.+..+
T Consensus 32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 488999999999998 999999999999999999998766544
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=97.35 E-value=8.6e-05 Score=84.88 Aligned_cols=41 Identities=29% Similarity=0.426 Sum_probs=37.9
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhh------------hcCCCCCeEEECCc
Q 041277 1026 KIEAGKSTALVGQSGSGKSTIIGLIER------------FYDPLKGDVKIDDR 1066 (1133)
Q Consensus 1026 ~I~~Ge~vaIVG~SGSGKSTL~~LL~R------------~ydp~~G~I~IdG~ 1066 (1133)
++++|.++||||++|+|||||++.|.+ ..+|+.|.|.++|.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~ 68 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDE 68 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCc
Confidence 568899999999999999999999999 67899999999884
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=2.9e-05 Score=79.11 Aligned_cols=40 Identities=43% Similarity=0.493 Sum_probs=33.1
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHHhccCCCcc--EEEECCeec
Q 041277 387 PAGKTVALVGGSGSGKSTVIALLQRFYAPLGG--EIILDGVSI 427 (1133)
Q Consensus 387 ~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G--~i~~~g~~~ 427 (1133)
++|++++|+|++||||||+.++|.+.+.+ .| .+.+|+..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHH
Confidence 47999999999999999999999998866 56 666676444
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0001 Score=93.35 Aligned_cols=61 Identities=20% Similarity=0.169 Sum_probs=47.1
Q ss_pred ccEEEEeEEEECCCC--CCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHH--------hhhcCCCCCe
Q 041277 1000 GNIELQNVHFAYPAR--PDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLI--------ERFYDPLKGD 1060 (1133)
Q Consensus 1000 g~I~f~nVsF~Y~~~--~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL--------~R~ydp~~G~ 1060 (1133)
+.|++++...-+-.. .+..|++|++|++++|+.++|+||+||||||+++.+ .|.|-|.++.
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~ 700 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESA 700 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEE
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccc
Confidence 468888753322111 134689999999999999999999999999999999 7777776543
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=9.3e-05 Score=81.78 Aligned_cols=45 Identities=20% Similarity=0.209 Sum_probs=38.8
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCC-eEEECCcccCCCC
Q 041277 1028 EAGKSTALVGQSGSGKSTIIGLIERFYDPLKG-DVKIDDRDIRSYH 1072 (1133)
Q Consensus 1028 ~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G-~I~IdG~dI~~i~ 1072 (1133)
++|+.+++||++||||||++..|.+.+.+++| +|.+-+.|.....
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~ 148 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIA 148 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccch
Confidence 47999999999999999999999999998788 7887777765433
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=97.30 E-value=6.3e-05 Score=90.67 Aligned_cols=48 Identities=21% Similarity=0.347 Sum_probs=43.1
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCe
Q 041277 377 IIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGV 425 (1133)
Q Consensus 377 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~ 425 (1133)
.+++++++++ +|+.++|+||+|+|||||+++|++...+..|+|.++|.
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~ 144 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGV 144 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEeccc
Confidence 3678888888 89999999999999999999999999999999887773
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=4.6e-05 Score=77.76 Aligned_cols=36 Identities=28% Similarity=0.377 Sum_probs=32.9
Q ss_pred cEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCC
Q 041277 1024 SIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKG 1059 (1133)
Q Consensus 1024 sl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G 1059 (1133)
+|++++|+.++|+||+|+|||||++++.+.+.|.+|
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g 67 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKG 67 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSC
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcC
Confidence 467889999999999999999999999999987777
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=5.2e-05 Score=78.64 Aligned_cols=58 Identities=14% Similarity=0.322 Sum_probs=40.0
Q ss_pred EEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhh----hcC----CCCCeEEECCccc
Q 041277 1008 HFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIER----FYD----PLKGDVKIDDRDI 1068 (1133)
Q Consensus 1008 sF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R----~yd----p~~G~I~IdG~dI 1068 (1133)
+|+||+ -..+++++|++.+++ +|++||++|+|||||++.+.+ -|. ++.+.+.+||.++
T Consensus 6 ~~~~~~--~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l 71 (198)
T 1f6b_A 6 DWIYSG--FSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTF 71 (198)
T ss_dssp ---------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEE
T ss_pred HHHHHH--HHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEE
Confidence 467764 235899999998887 689999999999999999986 233 3457788887543
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0014 Score=72.35 Aligned_cols=70 Identities=21% Similarity=0.199 Sum_probs=43.5
Q ss_pred ChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHH----------HHHHHHHHHHHh-----CCCeEEEEecCcchh----
Q 041277 501 SGGQKQRIAIARAIIKAPRILLLDEATSALDSES----------ERVVQEALDKAV-----VGRTTIIIAHRLSTI---- 561 (1133)
Q Consensus 501 SgGqkqri~iARal~~~~~illlDE~ts~lD~~~----------~~~i~~~l~~~~-----~~~t~i~itH~~~~~---- 561 (1133)
++++++|-.+++|...+|.++++||+.+-++... ...+...+.... .+..+|.+|++.+.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 4677888888888888999999999988776432 122333333321 123456678876433
Q ss_pred -hcCCEEEEE
Q 041277 562 -RNADVIAVV 570 (1133)
Q Consensus 562 -~~~d~i~~l 570 (1133)
+.+|+++.+
T Consensus 177 ~~R~~~~i~~ 186 (297)
T 3b9p_A 177 LRRFTKRVYV 186 (297)
T ss_dssp HHHCCEEEEC
T ss_pred HhhCCeEEEe
Confidence 346665444
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=97.25 E-value=6.3e-05 Score=90.67 Aligned_cols=80 Identities=14% Similarity=0.138 Sum_probs=50.2
Q ss_pred EEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhccccc
Q 041277 1004 LQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALV 1083 (1133)
Q Consensus 1004 f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV 1083 (1133)
.++|..+|. +..+++++++++ +|+.+.|+||+|+||||++++|.+...+..|+|.++|.....--....|+.++.+
T Consensus 86 ~~~vk~~i~---~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~ 161 (543)
T 3m6a_A 86 LEKVKERIL---EYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAM 161 (543)
T ss_dssp CHHHHHHHH---HHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC------------------
T ss_pred HHHHHHHHH---HHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccC
Confidence 455555552 234678889988 8999999999999999999999999999999999988543222223344566666
Q ss_pred cccc
Q 041277 1084 SQEP 1087 (1133)
Q Consensus 1084 ~Qdp 1087 (1133)
+|..
T Consensus 162 ~~~~ 165 (543)
T 3m6a_A 162 PGRI 165 (543)
T ss_dssp --CH
T ss_pred chHH
Confidence 6543
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.25 E-value=5.2e-05 Score=85.84 Aligned_cols=53 Identities=17% Similarity=0.130 Sum_probs=46.3
Q ss_pred ccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCC
Q 041277 1018 MIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRS 1070 (1133)
Q Consensus 1018 ~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~ 1070 (1133)
.+++++++++++|.+++|+|++|+||||+++.|.+.+.+.+|++.+-+.|...
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~ 96 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSS 96 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCc
Confidence 37899999999999999999999999999999999998888888776666543
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=5.8e-05 Score=79.22 Aligned_cols=45 Identities=29% Similarity=0.355 Sum_probs=40.1
Q ss_pred EEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCC--eEEECCcccC
Q 041277 1025 IKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKG--DVKIDDRDIR 1069 (1133)
Q Consensus 1025 l~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G--~I~IdG~dI~ 1069 (1133)
+.+++|..+.|+|++||||||+++.|.+.+.|..| .+.+||-+++
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r 66 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 66 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHh
Confidence 45788999999999999999999999999988888 8999976654
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=2.8e-05 Score=81.00 Aligned_cols=69 Identities=23% Similarity=0.393 Sum_probs=39.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhh------hcCCCCCeEEECCc--ccCCCCh--------hHHhhcccccccccccccccHH
Q 041277 1032 STALVGQSGSGKSTIIGLIER------FYDPLKGDVKIDDR--DIRSYHL--------RSLRRHIALVSQEPTLFAGTIR 1095 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R------~ydp~~G~I~IdG~--dI~~i~l--------~~LR~~isiV~Qdp~LF~gTIr 1095 (1133)
.|+|+|++||||||++++|.+ +.+|..|...++.. |-...+. +.+++....+.|+.+++++++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~vi~d~~~~ 81 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFKEPVEENPYFEQYYKDLKKTVFKMQIYMLTARSKQLKQAKNLENIIFDRTLL 81 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEECCCGGGCTTHHHHTTCHHHHHHHHHHHHHHHHHHHHC------CEEEESCTT
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEcccccccHHHHHHHhCccccchhHHHHHHHHHHHHHHHhhccCCEEEEeccc
Confidence 689999999999999999998 44554444333221 1111110 1123334566788889999888
Q ss_pred HHhcc
Q 041277 1096 ENIAY 1100 (1133)
Q Consensus 1096 eNI~~ 1100 (1133)
+|+.|
T Consensus 82 ~~~~~ 86 (205)
T 2jaq_A 82 EDPIF 86 (205)
T ss_dssp THHHH
T ss_pred hhHHH
Confidence 77654
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00011 Score=86.39 Aligned_cols=61 Identities=28% Similarity=0.366 Sum_probs=40.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHhhhc------------CCCCCeEEECCcccCCCChhHHhhccccccccccccc
Q 041277 1031 KSTALVGQSGSGKSTIIGLIERFY------------DPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFA 1091 (1133)
Q Consensus 1031 e~vaIVG~SGSGKSTL~~LL~R~y------------dp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~ 1091 (1133)
-++||||++|+|||||++.|.+.. ||.+|.+.+||.++.-++..-+|+..++.+|+...|.
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~ 253 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYS 253 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSC
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHH
Confidence 379999999999999999999874 3778999999987766666666777777777666554
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00036 Score=77.96 Aligned_cols=103 Identities=15% Similarity=0.129 Sum_probs=65.7
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHH
Q 041277 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENI 457 (1133)
Q Consensus 378 ~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni 457 (1133)
.|+++.--+++|+++.|.|++|+|||||+.-++.-.-.. | ..+.|++=|
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~-g------------------~~vl~~slE------------ 105 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN-D------------------DVVNLHSLE------------ 105 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTT-T------------------CEEEEEESS------------
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc-C------------------CeEEEEECC------------
Confidence 577777669999999999999999999988887532111 1 123333322
Q ss_pred hcCCCCCCHHHHHHHHH----HhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccC
Q 041277 458 LFGKEDASMEEVIEAAK----ASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSA 529 (1133)
Q Consensus 458 ~~~~~~~~~~~~~~~~~----~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~ 529 (1133)
.+.+++.+-+. ...+.++. .|. ..||++++||++.|...+.++++++.|+|...
T Consensus 106 ------~s~~~l~~R~~~~~~~i~~~~l~----~~~--------~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~ 163 (315)
T 3bh0_A 106 ------MGKKENIKRLIVTAGSINAQKIK----AAR--------RDFASEDWGKLSMAIGEISNSNINIFDKAGQS 163 (315)
T ss_dssp ------SCHHHHHHHHHHHHTTCCHHHHH----SCH--------HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB
T ss_pred ------CCHHHHHHHHHHHHcCCCHHHHh----cCC--------CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC
Confidence 22233222111 11111111 110 12899999999999999999999999998643
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=97.23 E-value=7.6e-05 Score=91.41 Aligned_cols=65 Identities=15% Similarity=0.158 Sum_probs=56.0
Q ss_pred ccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCC-CeEEECCcccCCCChhHHhhccccccccc
Q 041277 1018 MIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLK-GDVKIDDRDIRSYHLRSLRRHIALVSQEP 1087 (1133)
Q Consensus 1018 ~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~-G~I~IdG~dI~~i~l~~LR~~isiV~Qdp 1087 (1133)
.+++++++.+++|+.+.|+||+|+||||++++|.++..+.. |.+.+++.+.... ...++++||..
T Consensus 48 ~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-----~p~i~~~p~g~ 113 (604)
T 3k1j_A 48 HAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-----MPRIKTVPACQ 113 (604)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-----SCEEEEEETTH
T ss_pred hhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-----CCcEEEEecch
Confidence 48899999999999999999999999999999999999887 8899988876544 34577776654
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.002 Score=68.72 Aligned_cols=28 Identities=29% Similarity=0.324 Sum_probs=23.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccCCCcc
Q 041277 391 TVALVGGSGSGKSTVIALLQRFYAPLGG 418 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~~~~~~G 418 (1133)
.++|+|++|+|||||++.|+|...+.+|
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 6899999999999999999997665554
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0002 Score=76.10 Aligned_cols=44 Identities=20% Similarity=0.231 Sum_probs=32.7
Q ss_pred ccCccEEee---CCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEEC
Q 041277 1020 FEGFSIKIE---AGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKID 1064 (1133)
Q Consensus 1020 L~~isl~I~---~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~Id 1064 (1133)
|.++|++++ +|..++|.|++||||||+++.|...+.+ .+.+...
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 455555555 8999999999999999999999999988 7777644
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.17 E-value=7.1e-05 Score=84.77 Aligned_cols=51 Identities=16% Similarity=0.190 Sum_probs=44.6
Q ss_pred ccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeec
Q 041277 377 IIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSI 427 (1133)
Q Consensus 377 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~ 427 (1133)
.+++++++++++|.+++|+|++|+||||+++.|++.+.+..|+|.+-+.|.
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~ 94 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP 94 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence 378899999999999999999999999999999999988888776655443
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00011 Score=88.34 Aligned_cols=72 Identities=17% Similarity=0.361 Sum_probs=54.9
Q ss_pred cccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhh----------------------c-C---------------CCCCe
Q 041277 1019 IFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERF----------------------Y-D---------------PLKGD 1060 (1133)
Q Consensus 1019 vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~----------------------y-d---------------p~~G~ 1060 (1133)
.++++++++.|| ..+|||+||||||||+.+|.-+ + + ..+++
T Consensus 50 ~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~llg~r~~~~~i~~g~~~a~v~~~f~~~~~~~~~~i~r~~~~~g~~~ 128 (517)
T 4ad8_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGA 128 (517)
T ss_dssp TBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHHTCSCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCCE
T ss_pred ceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHHhcCCcHHHHhcCCCCcEEEEEEEEecCCCCeEEEEEEEecCCCcE
Confidence 468899999999 9999999999999999999554 4 2 23578
Q ss_pred EEECCcccCCCChhHHhhc-cccccccccccc
Q 041277 1061 VKIDDRDIRSYHLRSLRRH-IALVSQEPTLFA 1091 (1133)
Q Consensus 1061 I~IdG~dI~~i~l~~LR~~-isiV~Qdp~LF~ 1091 (1133)
++|||.++..-.+.++-.. +.+++|+-.++.
T Consensus 129 ~~ing~~v~~~~l~~~~~~li~i~~q~~~~~l 160 (517)
T 4ad8_A 129 ARLSGEVVSVRELQEWAQGRLTIHWQHSAVSL 160 (517)
T ss_dssp EESSSSBCCHHHHHHHHTTTEEEESGGGGGTT
T ss_pred EEECCEECCHHHHHHHhhhheEEeCCchHHhc
Confidence 9999998865445554443 578899865543
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00017 Score=76.53 Aligned_cols=43 Identities=23% Similarity=0.287 Sum_probs=31.8
Q ss_pred ccceeEEee---CCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEE
Q 041277 379 FKDFCLTIP---AGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIIL 422 (1133)
Q Consensus 379 l~~i~l~i~---~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~ 422 (1133)
|.++|+.++ +|.+++|.|++||||||+++.|...+.+ .+.+..
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~ 58 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIM 58 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCcee
Confidence 566666665 8999999999999999999999999988 666643
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=7.3e-05 Score=85.43 Aligned_cols=42 Identities=26% Similarity=0.295 Sum_probs=33.4
Q ss_pred ccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhh--hcCCCCCeEE
Q 041277 1018 MIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIER--FYDPLKGDVK 1062 (1133)
Q Consensus 1018 ~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R--~ydp~~G~I~ 1062 (1133)
.+|++++++++ .|++||++|||||||++.|.+ |.++.+|.+.
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT 68 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT 68 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCC
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCccc
Confidence 47899999999 999999999999999999999 7777777654
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0021 Score=69.47 Aligned_cols=44 Identities=25% Similarity=0.363 Sum_probs=29.1
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCe
Q 041277 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGV 425 (1133)
Q Consensus 378 ~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~ 425 (1133)
.++++++..++| +.|+||+|+||||++++|++.+... -+.+++.
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~ 79 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGS 79 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSC
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHH
Confidence 345555555555 8899999999999999999987432 3555543
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0002 Score=72.32 Aligned_cols=35 Identities=29% Similarity=0.311 Sum_probs=29.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcc
Q 041277 1029 AGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRD 1067 (1133)
Q Consensus 1029 ~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~d 1067 (1133)
.|+.++|+|++||||||++++|.+.+.+ +.+|+-+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~d~ 37 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDSDQ 37 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEeccH
Confidence 4788999999999999999999998754 6777533
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00015 Score=82.21 Aligned_cols=43 Identities=23% Similarity=0.270 Sum_probs=37.1
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCC
Q 041277 1028 EAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRS 1070 (1133)
Q Consensus 1028 ~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~ 1070 (1133)
+++.+|||+|++|||||||++.|.+...+.+|+|.|.+.|...
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~ 114 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSS 114 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCC
Confidence 4567899999999999999999999998889999888877654
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00063 Score=72.52 Aligned_cols=137 Identities=17% Similarity=0.234 Sum_probs=71.7
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCcc-ccHHHHHhcCCCCC
Q 041277 386 IPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFA-TSIKENILFGKEDA 464 (1133)
Q Consensus 386 i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~-~ti~eni~~~~~~~ 464 (1133)
+.+|+.++++||+||||||++.+++.......|. ...++++.+.|.... .++.+|+.......
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----------------~~~~~~l~~~p~~~la~q~~~~~~~~~~~~ 136 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----------------AAECNIVVTQPRRISAVSVAERVAFERGEE 136 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----------------GGGCEEEEEESSHHHHHHHHHHHHHTTTCC
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----------------CCceEEEEeccchHHHHHHHHHHHHHhccc
Confidence 4578999999999999999888765432111111 124677888886543 36777765321100
Q ss_pred CHHHHHHHHHHhchHHHHHhCCCcccccccCCC---CCCChHHHHHHHHHHHHhhCCCEEEEeCccc-CCChHHHHHHHH
Q 041277 465 SMEEVIEAAKASNAHNFIRQLPQQYDTQVGERG---VQMSGGQKQRIAIARAIIKAPRILLLDEATS-ALDSESERVVQE 540 (1133)
Q Consensus 465 ~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g---~~LSgGqkqri~iARal~~~~~illlDE~ts-~lD~~~~~~i~~ 540 (1133)
- ....+. ....+....... .--+.|+-.+.. +.-+++-+++++||+-. ++|........+
T Consensus 137 ~-------~~~~g~-------~~~~~~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~ 200 (235)
T 3llm_A 137 P-------GKSCGY-------SVRFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLR 200 (235)
T ss_dssp T-------TSSEEE-------EETTEEECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHH
T ss_pred c-------CceEEE-------eechhhccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHH
Confidence 0 000000 000000110000 012456665553 34688999999999976 476665533333
Q ss_pred HHHHHhCC-CeEEEE
Q 041277 541 ALDKAVVG-RTTIII 554 (1133)
Q Consensus 541 ~l~~~~~~-~t~i~i 554 (1133)
.+.....+ +++++.
T Consensus 201 ~i~~~~~~~~~il~S 215 (235)
T 3llm_A 201 DVVQAYPEVRIVLMS 215 (235)
T ss_dssp HHHHHCTTSEEEEEE
T ss_pred HHHhhCCCCeEEEEe
Confidence 33333333 344443
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.11 E-value=6.8e-05 Score=77.92 Aligned_cols=74 Identities=23% Similarity=0.353 Sum_probs=45.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccC-CCC-h--hHHhhcccccccccccccccHHHHhccCCCCCC
Q 041277 1031 KSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIR-SYH-L--RSLRRHIALVSQEPTLFAGTIRENIAYGASDEI 1106 (1133)
Q Consensus 1031 e~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~-~i~-l--~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~ 1106 (1133)
..|+|+|++||||||+.++|.+. |-..||.-++. +.. - +.+++.+ |+.+. +|++ +|..++.. ..
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-----g~~~id~d~~~~~~~~~~~~~i~~~~----~~~~~-~g~i-~~~~l~~~-~~ 76 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-----GYPVLDLDALAARARENKEEELKRLF----PEAVV-GGRL-DRRALARL-VF 76 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-----TCCEEEHHHHHHHHHHHTHHHHHHHC----GGGEE-TTEE-CHHHHHHH-HT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-----CCEEEcccHHHHHhcCChHHHHHHHH----HHHHh-CCCc-CHHHHHHH-Hh
Confidence 57999999999999999999996 77778765441 110 0 2333332 55555 6777 55444321 12
Q ss_pred CHHHHHHHHH
Q 041277 1107 DESEIVEAAK 1116 (1133)
Q Consensus 1107 sdeei~~Al~ 1116 (1133)
++++.++.++
T Consensus 77 ~~~~~~~~l~ 86 (203)
T 1uf9_A 77 SDPERLKALE 86 (203)
T ss_dssp TSHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 3445555554
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00022 Score=82.00 Aligned_cols=30 Identities=17% Similarity=0.294 Sum_probs=26.5
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHHhccCCC
Q 041277 387 PAGKTVALVGGSGSGKSTVIALLQRFYAPL 416 (1133)
Q Consensus 387 ~~g~~~~ivG~sGsGKSTll~~l~~~~~~~ 416 (1133)
+++..+.|.||+|+|||||++.+.+...+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 457899999999999999999999987654
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00028 Score=82.88 Aligned_cols=68 Identities=22% Similarity=0.324 Sum_probs=41.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccC------------CCccEEEECCeecCCCCHHHHhhhceEEecCCCCccc-cHHHHH
Q 041277 391 TVALVGGSGSGKSTVIALLQRFYA------------PLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFAT-SIKENI 457 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~~~------------~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eni 457 (1133)
.++|+|++|+|||||++.|+|... +.+|.+.++|.++.-++....++..++.+|....|.. +..+++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i 261 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSI 261 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHH
Confidence 799999999999999999999853 6789999999877555544444555555565544432 334444
Q ss_pred h
Q 041277 458 L 458 (1133)
Q Consensus 458 ~ 458 (1133)
.
T Consensus 262 ~ 262 (439)
T 1mky_A 262 E 262 (439)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00016 Score=91.33 Aligned_cols=52 Identities=17% Similarity=0.262 Sum_probs=41.6
Q ss_pred ccEEEEeEEEECC------CCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhh
Q 041277 1000 GNIELQNVHFAYP------ARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERF 1053 (1133)
Q Consensus 1000 g~I~f~nVsF~Y~------~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ 1053 (1133)
+.|++++. ++| ...+..|++|+||++++|+.++|+||+||||||+++.+.++
T Consensus 639 ~~i~i~~~--rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 639 RKIVIKNG--RHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp CEEEEEEE--CCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred CcEEEEec--cchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHH
Confidence 45777763 454 11235699999999999999999999999999999998643
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00012 Score=76.75 Aligned_cols=43 Identities=35% Similarity=0.294 Sum_probs=37.8
Q ss_pred EEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCcc--EEEECCee
Q 041277 384 LTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGG--EIILDGVS 426 (1133)
Q Consensus 384 l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G--~i~~~g~~ 426 (1133)
+.+++|.+++|+|++||||||+.+.|.+.+.|..| .+.++|.+
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 45778999999999999999999999999988888 88887543
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0012 Score=73.96 Aligned_cols=29 Identities=14% Similarity=0.178 Sum_probs=24.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhccCCC
Q 041277 388 AGKTVALVGGSGSGKSTVIALLQRFYAPL 416 (1133)
Q Consensus 388 ~g~~~~ivG~sGsGKSTll~~l~~~~~~~ 416 (1133)
++..+.|.||+|+|||||++.+.+...+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 35679999999999999999999876543
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00027 Score=78.42 Aligned_cols=141 Identities=18% Similarity=0.155 Sum_probs=73.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEEC-CeecCCCCHHHHhhhceEEecCCCC--ccccHHHHHhcCCCCC
Q 041277 388 AGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILD-GVSIDKLQLKWLRSQMGLVSQEPAL--FATSIKENILFGKEDA 464 (1133)
Q Consensus 388 ~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~-g~~~~~~~~~~~r~~i~~v~Q~~~l--~~~ti~eni~~~~~~~ 464 (1133)
++.+++|+|++|+|||||++.|.|.- +.+. +.+-. ..++..+++.++..- |-+|. | .
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~------~~i~s~~~~t-----Tr~~~~gi~~~~~~~i~~iDTp------G---~ 66 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK------ISITSRKAQT-----TRHRIVGIHTEGAYQAIYVDTP------G---L 66 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS------EEECCCCSSC-----CSSCEEEEEEETTEEEEEESSS------S---C
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC------ccccCCCCCc-----ceeeEEEEEEECCeeEEEEECc------C---C
Confidence 34489999999999999999999852 2221 11101 112346777776431 22221 1 1
Q ss_pred CHHHHHHHHHHhchHHHHHhCC---Cccccc--ccCCCCCCChHHHHHHHHHHHHh--hCCCEEEEeCcccCCChHH-HH
Q 041277 465 SMEEVIEAAKASNAHNFIRQLP---QQYDTQ--VGERGVQMSGGQKQRIAIARAII--KAPRILLLDEATSALDSES-ER 536 (1133)
Q Consensus 465 ~~~~~~~~~~~~~~~~~i~~l~---~g~~t~--~~~~g~~LSgGqkqri~iARal~--~~~~illlDE~ts~lD~~~-~~ 536 (1133)
.. +....... ++..... ...|-. +-+. ..+|+|++ .+++++. ..|.++++ +.+|... +.
T Consensus 67 ~~-~~~~~l~~----~~~~~~~~~l~~~D~vl~Vvd~-~~~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~ 133 (301)
T 1ega_A 67 HM-EEKRAINR----LMNKAASSSIGDVELVIFVVEG-TRWTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKA 133 (301)
T ss_dssp CH-HHHHHHHH----HHTCCTTSCCCCEEEEEEEEET-TCCCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHH
T ss_pred Cc-cchhhHHH----HHHHHHHHHHhcCCEEEEEEeC-CCCCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHH
Confidence 10 00011100 1111111 111211 1111 23898886 5667766 67888888 7888876 55
Q ss_pred HHHHHHHHHhC--C--CeEEEEecCcchh
Q 041277 537 VVQEALDKAVV--G--RTTIIIAHRLSTI 561 (1133)
Q Consensus 537 ~i~~~l~~~~~--~--~t~i~itH~~~~~ 561 (1133)
.+.+.+.++.+ + .++.+.+|+-.-+
T Consensus 134 ~~~~~l~~l~~~~~~~~~i~iSA~~g~~v 162 (301)
T 1ega_A 134 DLLPHLQFLASQMNFLDIVPISAETGLNV 162 (301)
T ss_dssp HHHHHHHHHHTTSCCSEEEECCTTTTTTH
T ss_pred HHHHHHHHHHHhcCcCceEEEECCCCCCH
Confidence 66666665543 3 2445556654433
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00027 Score=81.57 Aligned_cols=64 Identities=19% Similarity=0.132 Sum_probs=52.9
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCC
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYH 1072 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~ 1072 (1133)
+..++++..|+... ++++|+ +|+.++++|++||||||++..|.+.+.+..|+|.+.+.|+..-.
T Consensus 77 ~v~~~L~~~~~~~~-----~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~a 140 (425)
T 2ffh_A 77 TVYEALKEALGGEA-----RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPA 140 (425)
T ss_dssp HHHHHHHHHTTSSC-----CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHH
T ss_pred HHHHHHHHHhCCCc-----ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCch
Confidence 44556677774321 678887 89999999999999999999999999999999999998886643
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00029 Score=71.01 Aligned_cols=33 Identities=30% Similarity=0.364 Sum_probs=27.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECC
Q 041277 388 AGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDG 424 (1133)
Q Consensus 388 ~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g 424 (1133)
.|+.++|+||+||||||++++|.+.+.+ +.+|+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 4788999999999999999999998754 45554
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0003 Score=72.32 Aligned_cols=49 Identities=14% Similarity=0.401 Sum_probs=29.7
Q ss_pred cccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhh----hcCC----CCCeEEECCccc
Q 041277 1019 IFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIER----FYDP----LKGDVKIDDRDI 1068 (1133)
Q Consensus 1019 vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R----~ydp----~~G~I~IdG~dI 1068 (1133)
+++++|++.++. +|++||++|+|||||++.+.+ -|.| +.+.+.++|..+
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~ 69 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKF 69 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEE
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEE
Confidence 689999998887 899999999999999999987 2333 346777887543
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0051 Score=69.50 Aligned_cols=35 Identities=26% Similarity=0.342 Sum_probs=28.7
Q ss_pred cccceeEE---eeCCCEEEEEcCCCCcHHHHHHHHHhcc
Q 041277 378 IFKDFCLT---IPAGKTVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 378 ~l~~i~l~---i~~g~~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
.|+.+ +. +++|+++.|.||+|||||||...++...
T Consensus 50 ~LD~~-Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 50 SLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp HHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHH-hccCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45555 33 8899999999999999999998877654
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.001 Score=68.87 Aligned_cols=27 Identities=30% Similarity=0.338 Sum_probs=23.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhccCCC
Q 041277 390 KTVALVGGSGSGKSTVIALLQRFYAPL 416 (1133)
Q Consensus 390 ~~~~ivG~sGsGKSTll~~l~~~~~~~ 416 (1133)
..+.|.||+|+|||||++.+.......
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR 81 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 689999999999999999999876543
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00038 Score=81.50 Aligned_cols=50 Identities=26% Similarity=0.426 Sum_probs=38.8
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCC
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKG 1059 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G 1059 (1133)
.|+++|+ .+|.+ . . .+++.+|+.++|+||+|||||||+.++.++..|.++
T Consensus 6 ~l~~~~~-~~~~~---~---~--~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~~ 55 (430)
T 1w1w_A 6 GLELSNF-KSYRG---V---T--KVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRSN 55 (430)
T ss_dssp EEEEESC-SSCCS---E---E--EEECTTCSEEEEECSTTSSHHHHHHHHHHHTTC---
T ss_pred EEEEeCE-EEECC---c---e--eEEecCCCEEEEECCCCCCHHHHHHHHHhhhccccc
Confidence 5788888 57731 1 1 255778999999999999999999999999988653
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00034 Score=70.58 Aligned_cols=41 Identities=20% Similarity=0.417 Sum_probs=31.0
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhhhcCC------------CCCeEEECCccc
Q 041277 1028 EAGKSTALVGQSGSGKSTIIGLIERFYDP------------LKGDVKIDDRDI 1068 (1133)
Q Consensus 1028 ~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp------------~~G~I~IdG~dI 1068 (1133)
++|.+|+|||++|+|||||++.|.+...+ ..+.+.+||.++
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 54 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPL 54 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEE
Confidence 47899999999999999999999985321 135777887543
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00023 Score=80.77 Aligned_cols=42 Identities=29% Similarity=0.419 Sum_probs=36.4
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecC
Q 041277 387 PAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSID 428 (1133)
Q Consensus 387 ~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~ 428 (1133)
+++.+++|+|++|||||||++.|.|.+.+.+|+|.+.+.|..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~ 113 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPS 113 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCC
Confidence 357799999999999999999999999999998888776654
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00022 Score=74.29 Aligned_cols=30 Identities=23% Similarity=0.345 Sum_probs=26.5
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHHhccC
Q 041277 385 TIPAGKTVALVGGSGSGKSTVIALLQRFYA 414 (1133)
Q Consensus 385 ~i~~g~~~~ivG~sGsGKSTll~~l~~~~~ 414 (1133)
...+|.+++|+|||||||||+.+.|...++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 356899999999999999999999998774
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00053 Score=77.59 Aligned_cols=33 Identities=18% Similarity=0.354 Sum_probs=31.1
Q ss_pred cccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhh
Q 041277 1019 IFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIER 1052 (1133)
Q Consensus 1019 vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R 1052 (1133)
.+++++|++++| .++|+||+||||||++.++..
T Consensus 16 ~~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 16 NLAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp TCCSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceeeeEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 468999999999 999999999999999999986
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0004 Score=70.85 Aligned_cols=75 Identities=21% Similarity=0.392 Sum_probs=54.5
Q ss_pred EEEEcCCCCCHHHHHHHHhhhc-------------CCCCCeEEECCcccCCCChhHHhhcccccccccccccccHHHHhc
Q 041277 1033 TALVGQSGSGKSTIIGLIERFY-------------DPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIA 1099 (1133)
Q Consensus 1033 vaIVG~SGSGKSTL~~LL~R~y-------------dp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~ 1099 (1133)
|.|+||||||||||++.|..-+ +|..|+ +||+|-.=++.+...+.+. ++-+|-.+.+..| .
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE--~~G~dY~Fvs~~eF~~~i~---~g~flE~~~~~g~-~ 77 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGE--VNGKDYNFVSVDEFKSMIK---NNEFIEWAQFSGN-Y 77 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHHH---TTCEEEEEEETTE-E
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCC--cCCceeEeecHHHHHHHHH---cCCEEEEEEEcCc-e
Confidence 6799999999999998886443 245676 5899999999999887654 7777777777666 3
Q ss_pred cCCCCCCCHHHHHHHHHH
Q 041277 1100 YGASDEIDESEIVEAAKA 1117 (1133)
Q Consensus 1100 ~g~~~~~sdeei~~Al~~ 1117 (1133)
||- +-++|.++++.
T Consensus 78 YGt----~~~~v~~~l~~ 91 (186)
T 1ex7_A 78 YGS----TVASVKQVSKS 91 (186)
T ss_dssp EEE----EHHHHHHHHHH
T ss_pred eee----ecceeeehhhC
Confidence 653 33455555443
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00018 Score=77.14 Aligned_cols=68 Identities=10% Similarity=0.039 Sum_probs=45.4
Q ss_pred cccCc-cEEeeCCCEEEEEcCCCCCHHHHH-HHHhhhcCCCCCeEEECCcccCCCChhHHhhccccccccc
Q 041277 1019 IFEGF-SIKIEAGKSTALVGQSGSGKSTII-GLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEP 1087 (1133)
Q Consensus 1019 vL~~i-sl~I~~Ge~vaIVG~SGSGKSTL~-~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp 1087 (1133)
.|+++ .--+++|+.++|+||+||||||++ +++........+.+++++.+- .-.+....+++++.+|+.
T Consensus 11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~-~~~~~~~~~~~g~~~~~~ 80 (247)
T 2dr3_A 11 GVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH-PVQVRQNMAQFGWDVKPY 80 (247)
T ss_dssp THHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC-HHHHHHHHHTTTCCCHHH
T ss_pred hHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC-HHHHHHHHHHcCCCHHHH
Confidence 45665 567999999999999999999995 555666655555666665432 111222234578888764
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0003 Score=72.78 Aligned_cols=42 Identities=21% Similarity=0.428 Sum_probs=31.2
Q ss_pred EEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHh
Q 041277 367 QFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQR 411 (1133)
Q Consensus 367 ~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~ 411 (1133)
+++|++- ..+++++|++.+++ .++++|++|+|||||++.+.+
T Consensus 6 ~~~~~~~--~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 6 DWIYSGF--SSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp ---------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHHH--HHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 4566643 35899999998887 588999999999999999986
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0003 Score=77.64 Aligned_cols=64 Identities=22% Similarity=0.218 Sum_probs=50.8
Q ss_pred EEEEeEEEECCCCCCCccccC-ccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCC
Q 041277 1002 IELQNVHFAYPARPDVMIFEG-FSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSY 1071 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~-isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i 1071 (1133)
+..+++...|+... ++ ++++.+ |+.++++|++|+||||++..|.+.+.+..|++.+.+.|...-
T Consensus 75 ~~~~~l~~~~~~~~-----~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~ 139 (297)
T 1j8m_F 75 IVYDELSNLFGGDK-----EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRP 139 (297)
T ss_dssp HHHHHHHHHTTCSC-----CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSS
T ss_pred HHHHHHHHHhcccc-----ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCH
Confidence 33455555664221 45 788876 999999999999999999999999998889999988887653
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00065 Score=66.78 Aligned_cols=31 Identities=26% Similarity=0.477 Sum_probs=25.6
Q ss_pred cceeEEeeCCCEEEEEcCCCCcHHHHHHHHHh
Q 041277 380 KDFCLTIPAGKTVALVGGSGSGKSTVIALLQR 411 (1133)
Q Consensus 380 ~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~ 411 (1133)
++..+++.+| +.+|+|||||||||++.+|.-
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 4455666665 899999999999999999973
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00073 Score=76.12 Aligned_cols=63 Identities=16% Similarity=0.148 Sum_probs=50.2
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeE-EECCcccCCCChhHHhhccccccccccccc
Q 041277 1026 KIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV-KIDDRDIRSYHLRSLRRHIALVSQEPTLFA 1091 (1133)
Q Consensus 1026 ~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I-~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~ 1091 (1133)
=+++|+.+.|.||+|||||||+..+.+...+..|.+ +||+.+..+ ....+++++.+|+..+..
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~---~~ra~rlgv~~~~l~i~~ 120 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALD---PVYAKNLGVDLKSLLISQ 120 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC---HHHHHHHTCCGGGCEEEC
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccc---hHHHHHcCCchhhhhhhh
Confidence 489999999999999999999999999888777765 787765432 235678899888766543
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00049 Score=75.47 Aligned_cols=30 Identities=30% Similarity=0.362 Sum_probs=27.5
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhhhcC
Q 041277 1026 KIEAGKSTALVGQSGSGKSTIIGLIERFYD 1055 (1133)
Q Consensus 1026 ~I~~Ge~vaIVG~SGSGKSTL~~LL~R~yd 1055 (1133)
.+++|+.++|+||+|||||||+..+.+...
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 478999999999999999999999998765
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00012 Score=77.43 Aligned_cols=55 Identities=22% Similarity=0.217 Sum_probs=35.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcc---CCCccEEE--------ECCeecCCCC-HHHHhhhceEEe
Q 041277 389 GKTVALVGGSGSGKSTVIALLQRFY---APLGGEII--------LDGVSIDKLQ-LKWLRSQMGLVS 443 (1133)
Q Consensus 389 g~~~~ivG~sGsGKSTll~~l~~~~---~~~~G~i~--------~~g~~~~~~~-~~~~r~~i~~v~ 443 (1133)
.-+++|.||+||||||+.+.|...+ ..+.|.++ -.|.++.+.. ...+.+.+.+.+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~ 75 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGV 75 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEE
Confidence 4589999999999999999998543 34445442 2344444322 334555666666
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00014 Score=82.32 Aligned_cols=70 Identities=14% Similarity=0.152 Sum_probs=55.1
Q ss_pred ccccCccEEeeCCCE--EEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCC-CChhHHhhccccccccc
Q 041277 1018 MIFEGFSIKIEAGKS--TALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRS-YHLRSLRRHIALVSQEP 1087 (1133)
Q Consensus 1018 ~vL~~isl~I~~Ge~--vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~-i~l~~LR~~isiV~Qdp 1087 (1133)
.+++.++..|+.|+. +.++||+|+||||+++++.+...+..+.+.+.+.+..+ .+.+.+|+.+..++|..
T Consensus 32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~~i~~~~~~~ 104 (340)
T 1sxj_C 32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTR 104 (340)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHHHHHHBC
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHHHHHHHHHhhc
Confidence 478999999999998 99999999999999999999987777665555544433 35677888776666543
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0042 Score=68.10 Aligned_cols=28 Identities=25% Similarity=0.330 Sum_probs=24.7
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHHhcc
Q 041277 386 IPAGKTVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 386 i~~g~~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
++++.-+.|.||+|+||||+++.+++.+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4567789999999999999999999865
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0029 Score=70.09 Aligned_cols=31 Identities=19% Similarity=0.315 Sum_probs=27.5
Q ss_pred EEeeCCCEEEEEcCCCCcHHHHHHHHHhccC
Q 041277 384 LTIPAGKTVALVGGSGSGKSTVIALLQRFYA 414 (1133)
Q Consensus 384 l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~ 414 (1133)
+.++++..+.|.||+|+||||+++++++...
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 4567899999999999999999999998763
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00054 Score=77.97 Aligned_cols=37 Identities=27% Similarity=0.531 Sum_probs=31.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcC-----------CCCCeEEECCccc
Q 041277 1032 STALVGQSGSGKSTIIGLIERFYD-----------PLKGDVKIDDRDI 1068 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~yd-----------p~~G~I~IdG~dI 1068 (1133)
+|+|||++|||||||++.|.+... |..|.|.++|.++
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v 228 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKI 228 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEE
Confidence 389999999999999999998764 6779999999765
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0011 Score=68.11 Aligned_cols=33 Identities=21% Similarity=0.435 Sum_probs=20.8
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHh
Q 041277 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQR 411 (1133)
Q Consensus 378 ~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~ 411 (1133)
++++++++.++. .++++|++|+|||||++.+.+
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 789999998877 789999999999999999987
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00035 Score=71.51 Aligned_cols=43 Identities=30% Similarity=0.279 Sum_probs=35.9
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeE-EECCccc
Q 041277 1026 KIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV-KIDDRDI 1068 (1133)
Q Consensus 1026 ~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I-~IdG~dI 1068 (1133)
..++|..+.|+|++||||||+++.|.+.+.+..|.+ .+|+-++
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 446789999999999999999999999988777765 5666544
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.00088 Score=78.95 Aligned_cols=56 Identities=18% Similarity=0.196 Sum_probs=47.6
Q ss_pred CccEEeeCCCEEEEEcCCCCCHHHHHHHHhh--hcCCCCCeEEECCcccCCCChhHHh
Q 041277 1022 GFSIKIEAGKSTALVGQSGSGKSTIIGLIER--FYDPLKGDVKIDDRDIRSYHLRSLR 1077 (1133)
Q Consensus 1022 ~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R--~ydp~~G~I~IdG~dI~~i~l~~LR 1077 (1133)
-+++++.++..+.|+|.|||||||+++.|.. ++.++.|++.+.++|.+...+..+.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~ 216 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYE 216 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGT
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhc
Confidence 3678889999999999999999999998876 7777789999989998876666554
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0011 Score=70.40 Aligned_cols=28 Identities=18% Similarity=0.128 Sum_probs=24.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhccCC
Q 041277 388 AGKTVALVGGSGSGKSTVIALLQRFYAP 415 (1133)
Q Consensus 388 ~g~~~~ivG~sGsGKSTll~~l~~~~~~ 415 (1133)
++..+.|.||+|+||||+++.+......
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6889999999999999999999886643
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0022 Score=71.33 Aligned_cols=31 Identities=16% Similarity=0.252 Sum_probs=26.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhccCCCccEE
Q 041277 390 KTVALVGGSGSGKSTVIALLQRFYAPLGGEI 420 (1133)
Q Consensus 390 ~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i 420 (1133)
..+.++||+|+||||+++.|.+...+.+|.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 5789999999999999999999887766643
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0007 Score=77.23 Aligned_cols=31 Identities=29% Similarity=0.592 Sum_probs=28.6
Q ss_pred ccCccEEeeCCCEEEEEcCCCCCHHHHHHHHh
Q 041277 1020 FEGFSIKIEAGKSTALVGQSGSGKSTIIGLIE 1051 (1133)
Q Consensus 1020 L~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~ 1051 (1133)
++++++++++| .++|+||||||||||+.+|.
T Consensus 14 ~~~~~i~~~~g-~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 14 LKNVDIEFQSG-ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 57889999999 78899999999999999987
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=96.63 E-value=0.00041 Score=76.58 Aligned_cols=49 Identities=27% Similarity=0.327 Sum_probs=42.7
Q ss_pred cc-eeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCC
Q 041277 380 KD-FCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDK 429 (1133)
Q Consensus 380 ~~-i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~ 429 (1133)
++ ++++.+ |++++++|++|+||||++..|++.+.+..|+|.+.+.|...
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r 138 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYR 138 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 45 778776 99999999999999999999999999888999887776643
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.61 E-value=0.00092 Score=68.27 Aligned_cols=32 Identities=22% Similarity=0.353 Sum_probs=26.7
Q ss_pred CccEEeeCCCEEEEEcCCCCCHHHHHHHHhhh
Q 041277 1022 GFSIKIEAGKSTALVGQSGSGKSTIIGLIERF 1053 (1133)
Q Consensus 1022 ~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ 1053 (1133)
++|++.++|..++|+|++||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888999999999999999999999999876
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0007 Score=76.83 Aligned_cols=43 Identities=12% Similarity=0.308 Sum_probs=32.7
Q ss_pred CCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcch
Q 041277 517 APRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLST 560 (1133)
Q Consensus 517 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~ 560 (1133)
+++++++|| ...+++.....+.+.+.+...+..+|+++++...
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~ 175 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVTR 175 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchhh
Confidence 567999999 6778888888888888776555566777776653
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.00087 Score=72.33 Aligned_cols=43 Identities=33% Similarity=0.391 Sum_probs=36.5
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCC
Q 041277 1026 KIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRS 1070 (1133)
Q Consensus 1026 ~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~ 1070 (1133)
..+++..+.|+|++||||||+++.|.+.+. .|.+.+||-+++.
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~r~ 70 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSFRS 70 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGGGT
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHHHH
Confidence 456778999999999999999999999875 3678899977754
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0013 Score=66.12 Aligned_cols=27 Identities=26% Similarity=0.400 Sum_probs=23.4
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHHhcc
Q 041277 387 PAGKTVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 387 ~~g~~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
++|..++|+|++|+|||||++.+.+..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999864
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.57 E-value=0.00086 Score=72.50 Aligned_cols=64 Identities=19% Similarity=0.202 Sum_probs=41.8
Q ss_pred cccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcccccccc
Q 041277 1019 IFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQE 1086 (1133)
Q Consensus 1019 vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qd 1086 (1133)
.++++++..++| +.|+||+|+||||+++++.+..... -+.+++.++.+.......+++..++|+
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~ 99 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDFVEMFVGVGASRVRDMFEQ 99 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCSSTTSCCCCCHHHHHHHHHH
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHHHHHHhhhhhHHHHHHHHHH
Confidence 345555555655 8999999999999999999988643 588998887665433333344444443
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=96.52 E-value=0.00092 Score=75.89 Aligned_cols=59 Identities=19% Similarity=0.331 Sum_probs=41.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcccccccccccccccHHHHhccCCCCCCCHHHH
Q 041277 1032 STALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEI 1111 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei 1111 (1133)
++||||++|+|||||+++|.+.. + ++.+++.. |+..|+.+. .++++++
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~-~----------~v~~~p~~------------------Ti~pn~g~~---~v~~~~l 50 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN-A----------LAANYPFA------------------TIDKNVGVV---PLEDERL 50 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH-T----------TCSSCCGG------------------GGSTTEEEE---ECCCHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC-C----------cccCCCCc------------------eeccceeeE---ecChHHH
Confidence 58999999999999999999984 3 23333322 666676543 2456678
Q ss_pred HHHHHHcchHH
Q 041277 1112 VEAAKAANAHD 1122 (1133)
Q Consensus 1112 ~~Al~~a~l~d 1122 (1133)
..+++.++.++
T Consensus 51 ~~~~~~~~~~~ 61 (368)
T 2dby_A 51 YALQRTFAKGE 61 (368)
T ss_dssp HHHHHHHCBTT
T ss_pred HHHHHHhcccc
Confidence 88887777654
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.00026 Score=80.62 Aligned_cols=54 Identities=24% Similarity=0.258 Sum_probs=36.0
Q ss_pred CcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCe
Q 041277 998 ITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGD 1060 (1133)
Q Consensus 998 ~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~ 1060 (1133)
..|.|.|+|++..|.. ..++++++|+| +|||++|+|||||++.|++.-.+..|.
T Consensus 14 ~~~~v~~~~l~~~~~~---k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~ 67 (361)
T 2qag_A 14 TPGYVGFANLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV 67 (361)
T ss_dssp -------CCHHHHHHT---HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-----
T ss_pred CCceEEeccchHHhCC---eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCc
Confidence 3578999999988852 34789999977 999999999999999998765444443
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0012 Score=68.48 Aligned_cols=36 Identities=31% Similarity=0.358 Sum_probs=30.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccC
Q 041277 1030 GKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIR 1069 (1133)
Q Consensus 1030 Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~ 1069 (1133)
...|+|+|++||||||+++.|.+.+ |...+|+-++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~~~ 53 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDALH 53 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGGGC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCcCc
Confidence 4689999999999999999999877 56677766553
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0013 Score=75.04 Aligned_cols=41 Identities=24% Similarity=0.423 Sum_probs=34.9
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhhh-----------cCCCCCeEEECCc
Q 041277 1026 KIEAGKSTALVGQSGSGKSTIIGLIERF-----------YDPLKGDVKIDDR 1066 (1133)
Q Consensus 1026 ~I~~Ge~vaIVG~SGSGKSTL~~LL~R~-----------ydp~~G~I~IdG~ 1066 (1133)
.+..|.++||||++|+|||||++.|.+- .+|..|.+.++|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 5678899999999999999999999998 6788898888764
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0014 Score=66.77 Aligned_cols=32 Identities=19% Similarity=0.422 Sum_probs=26.7
Q ss_pred ceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhc
Q 041277 381 DFCLTIPAGKTVALVGGSGSGKSTVIALLQRF 412 (1133)
Q Consensus 381 ~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~ 412 (1133)
++|++.++|..++|+|++||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888999999999999999999999999875
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0011 Score=67.63 Aligned_cols=36 Identities=33% Similarity=0.416 Sum_probs=31.5
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEE
Q 041277 385 TIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI 420 (1133)
Q Consensus 385 ~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i 420 (1133)
..++|.+++|+|++||||||+.+.|.+.+.+..|.+
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~ 44 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRV 44 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 345789999999999999999999999988777765
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0017 Score=63.68 Aligned_cols=34 Identities=29% Similarity=0.544 Sum_probs=26.0
Q ss_pred cCccEEeeCCCEEEEEcCCCCCHHHHHHHHh-hhcC
Q 041277 1021 EGFSIKIEAGKSTALVGQSGSGKSTIIGLIE-RFYD 1055 (1133)
Q Consensus 1021 ~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~-R~yd 1055 (1133)
++.+++..+| ..+|+||+|||||||+.+|. -+|.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~~l~g 49 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILVGLYW 49 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHHHHHC
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHHHHcC
Confidence 4445555555 78999999999999999886 4444
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.002 Score=68.26 Aligned_cols=45 Identities=13% Similarity=0.178 Sum_probs=32.1
Q ss_pred hCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchh
Q 041277 516 KAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTI 561 (1133)
Q Consensus 516 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~ 561 (1133)
.+|.++++||+-. +|......+.+.+.+...+..+|++|++...+
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 3578999999866 77777777777776544456778888876543
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0017 Score=65.53 Aligned_cols=38 Identities=24% Similarity=0.273 Sum_probs=30.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHhhhcCCC---CCeEEECCccc
Q 041277 1031 KSTALVGQSGSGKSTIIGLIERFYDPL---KGDVKIDDRDI 1068 (1133)
Q Consensus 1031 e~vaIVG~SGSGKSTL~~LL~R~ydp~---~G~I~IdG~dI 1068 (1133)
..++|+|+|||||||+++.|.+...+. -|.|..++.+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~~ 47 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDM 47 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC--
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCcc
Confidence 578999999999999999999876543 37788877553
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.011 Score=57.43 Aligned_cols=29 Identities=28% Similarity=0.356 Sum_probs=24.2
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHHhccCC
Q 041277 387 PAGKTVALVGGSGSGKSTVIALLQRFYAP 415 (1133)
Q Consensus 387 ~~g~~~~ivG~sGsGKSTll~~l~~~~~~ 415 (1133)
+.+.-+.|.||+|+|||++.+.|......
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~ 50 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRN 50 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSSTT
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCCc
Confidence 35567899999999999999999876544
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0017 Score=67.59 Aligned_cols=30 Identities=37% Similarity=0.515 Sum_probs=25.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCc
Q 041277 1032 STALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDR 1066 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~ 1066 (1133)
.+||+|++||||||+.+.|.++ |...+|+-
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~d 33 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDAD 33 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccchH
Confidence 5899999999999999999983 66666653
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0026 Score=63.38 Aligned_cols=23 Identities=35% Similarity=0.445 Sum_probs=21.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHhhh
Q 041277 1031 KSTALVGQSGSGKSTIIGLIERF 1053 (1133)
Q Consensus 1031 e~vaIVG~SGSGKSTL~~LL~R~ 1053 (1133)
-+|+|||++|+|||||++.|.+.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999999874
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0023 Score=64.45 Aligned_cols=38 Identities=24% Similarity=0.172 Sum_probs=29.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhccCCC---ccEEEECCee
Q 041277 389 GKTVALVGGSGSGKSTVIALLQRFYAPL---GGEIILDGVS 426 (1133)
Q Consensus 389 g~~~~ivG~sGsGKSTll~~l~~~~~~~---~G~i~~~g~~ 426 (1133)
-..++|+|+||||||||++.|.+.+.+. -|.|..++++
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 3589999999999999999999886543 2566665543
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.00041 Score=78.99 Aligned_cols=58 Identities=29% Similarity=0.195 Sum_probs=36.1
Q ss_pred cccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECC
Q 041277 358 LGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDG 424 (1133)
Q Consensus 358 ~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g 424 (1133)
.+.+.++|++..|.. +.++++++|+| +|+|++|+|||||++.|.+...+..|.+..++
T Consensus 15 ~~~v~~~~l~~~~~~---k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~ 72 (361)
T 2qag_A 15 PGYVGFANLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGAA 72 (361)
T ss_dssp ------CCHHHHHHT---HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC----------
T ss_pred CceEEeccchHHhCC---eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCC
Confidence 456888888888853 34789999977 99999999999999999887655555544333
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0016 Score=70.13 Aligned_cols=42 Identities=31% Similarity=0.482 Sum_probs=34.3
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecC
Q 041277 385 TIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSID 428 (1133)
Q Consensus 385 ~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~ 428 (1133)
..+++..+.|+|++||||||+.+.|.+.+. .|.+.+++..++
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~r 69 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSFR 69 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHHH
Confidence 456778999999999999999999999875 356778875553
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.007 Score=71.24 Aligned_cols=57 Identities=9% Similarity=0.142 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHhhCCCEEEEeCc-ccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchh
Q 041277 502 GGQKQRIAIARAIIKAPRILLLDEA-TSALDSESERVVQEALDKAVVGRTTIIIAHRLSTI 561 (1133)
Q Consensus 502 gGqkqri~iARal~~~~~illlDE~-ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~ 561 (1133)
+.|++....++..+.+++++|+... +.++... ...+.+.+++ .++.+|++.+..+..
T Consensus 87 ~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~-d~~l~~~l~~--~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 87 PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAA-DEEVAKILYR--TKKPVVLAVNKLDNT 144 (456)
T ss_dssp CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHH-HHHHHHHHTT--CCSCEEEEEECC---
T ss_pred HHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChH-HHHHHHHHHH--cCCCEEEEEECccch
Confidence 3588888889999999998777644 3444444 3445555543 478899998887654
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0017 Score=67.20 Aligned_cols=33 Identities=30% Similarity=0.431 Sum_probs=27.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCe
Q 041277 389 GKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGV 425 (1133)
Q Consensus 389 g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~ 425 (1133)
..+++|+|++||||||+.+.|.+.+ |...+++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d 50 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGD 50 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCC
Confidence 5689999999999999999999876 45555543
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0027 Score=72.35 Aligned_cols=41 Identities=20% Similarity=0.262 Sum_probs=33.4
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHHhc-----------cCCCccEEEECCe
Q 041277 385 TIPAGKTVALVGGSGSGKSTVIALLQRF-----------YAPLGGEIILDGV 425 (1133)
Q Consensus 385 ~i~~g~~~~ivG~sGsGKSTll~~l~~~-----------~~~~~G~i~~~g~ 425 (1133)
.+..|..++|||++|+|||||++.|.|. .+|+.|.+.++|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 4567889999999999999999999998 6777888877653
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0022 Score=65.28 Aligned_cols=37 Identities=24% Similarity=0.396 Sum_probs=28.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHhhh-----------cCCCCCeEEECCcc
Q 041277 1031 KSTALVGQSGSGKSTIIGLIERF-----------YDPLKGDVKIDDRD 1067 (1133)
Q Consensus 1031 e~vaIVG~SGSGKSTL~~LL~R~-----------ydp~~G~I~IdG~d 1067 (1133)
-+|++||++|+|||||++.|.+- .++..|.+.++|..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 55 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEK 55 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcE
Confidence 37999999999999999999873 23345667776643
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.00048 Score=71.38 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 041277 391 TVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
+++|+|++||||||+.+.|...+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999854
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0033 Score=65.24 Aligned_cols=30 Identities=27% Similarity=0.515 Sum_probs=24.9
Q ss_pred cceeEEeeCCCEEEEEcCCCCcHHHHHHHHH
Q 041277 380 KDFCLTIPAGKTVALVGGSGSGKSTVIALLQ 410 (1133)
Q Consensus 380 ~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~ 410 (1133)
++.++++.+| +++|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 4456666665 99999999999999999986
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0053 Score=61.08 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 041277 391 TVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
.++|+|++|+|||||++.+.|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.045 Score=63.17 Aligned_cols=29 Identities=34% Similarity=0.556 Sum_probs=25.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhccCCC
Q 041277 388 AGKTVALVGGSGSGKSTVIALLQRFYAPL 416 (1133)
Q Consensus 388 ~g~~~~ivG~sGsGKSTll~~l~~~~~~~ 416 (1133)
++.+++++|++|+||||++..|+..+...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 45689999999999999999999887654
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0053 Score=68.71 Aligned_cols=28 Identities=18% Similarity=0.213 Sum_probs=25.2
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHHhc
Q 041277 385 TIPAGKTVALVGGSGSGKSTVIALLQRF 412 (1133)
Q Consensus 385 ~i~~g~~~~ivG~sGsGKSTll~~l~~~ 412 (1133)
-+++|+++.|.||+|||||||+.-++.-
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999888753
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.043 Score=58.94 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhcc
Q 041277 388 AGKTVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 388 ~g~~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
+..-+.|.||+|+||||+++.++..+
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34458899999999999999999865
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.012 Score=68.93 Aligned_cols=37 Identities=14% Similarity=0.141 Sum_probs=31.1
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccC
Q 041277 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYA 414 (1133)
Q Consensus 378 ~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~ 414 (1133)
-|+.+.--+++|+++.|.|++|+|||||+.-++....
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4666665689999999999999999999988876543
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.015 Score=66.29 Aligned_cols=39 Identities=23% Similarity=0.377 Sum_probs=30.6
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCe
Q 041277 387 PAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGV 425 (1133)
Q Consensus 387 ~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~ 425 (1133)
.+|..+.|.||+|+||||+++.+..........+.+++.
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~ 106 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGS 106 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccch
Confidence 456789999999999999999999988654445555443
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0016 Score=72.57 Aligned_cols=37 Identities=32% Similarity=0.411 Sum_probs=33.6
Q ss_pred ccccCccEEeeCCCE--EEEEcCCCCCHHHHHHHHhhhc
Q 041277 1018 MIFEGFSIKIEAGKS--TALVGQSGSGKSTIIGLIERFY 1054 (1133)
Q Consensus 1018 ~vL~~isl~I~~Ge~--vaIVG~SGSGKSTL~~LL~R~y 1054 (1133)
.+++++++.+++|+. ++|+|++||||||+.++|.+..
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 378899999999999 9999999999999999998854
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0045 Score=62.84 Aligned_cols=22 Identities=36% Similarity=0.539 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 041277 391 TVALVGGSGSGKSTVIALLQRF 412 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~ 412 (1133)
.++++|++|+|||||++.+.+.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0038 Score=68.61 Aligned_cols=46 Identities=17% Similarity=0.242 Sum_probs=35.0
Q ss_pred cccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhh----hcCCCCCeEEECC
Q 041277 1019 IFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIER----FYDPLKGDVKIDD 1065 (1133)
Q Consensus 1019 vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R----~ydp~~G~I~IdG 1065 (1133)
++++..+.+ .|..++|+|+||+||||++..|.+ |..-+...|...|
T Consensus 134 ~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~dD~~~i~~~~ 183 (314)
T 1ko7_A 134 SLHGVLVDV-YGVGVLITGDSGIGKSETALELIKRGHRLVADDNVEIREIS 183 (314)
T ss_dssp EEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHTTCEEEESSEEEEEESS
T ss_pred eeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhcCCceecCCeEEEEEcC
Confidence 578877777 889999999999999999998887 4433434444433
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0018 Score=72.31 Aligned_cols=38 Identities=32% Similarity=0.343 Sum_probs=34.3
Q ss_pred ccccceeEEeeCCCE--EEEEcCCCCcHHHHHHHHHhccC
Q 041277 377 IIFKDFCLTIPAGKT--VALVGGSGSGKSTVIALLQRFYA 414 (1133)
Q Consensus 377 ~~l~~i~l~i~~g~~--~~ivG~sGsGKSTll~~l~~~~~ 414 (1133)
.+++++++.+++|+. ++|+|++||||||+.++|++.+.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 378889999999999 99999999999999999998653
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0039 Score=63.34 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 041277 1032 STALVGQSGSGKSTIIGLIERFY 1054 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~y 1054 (1133)
+|+|||++|+|||||++.+.+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999999853
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.031 Score=63.36 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=23.9
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHHhcc
Q 041277 387 PAGKTVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 387 ~~g~~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
++..-+.|.||+|+||||+++.++...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999999765
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0047 Score=63.91 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 041277 1032 STALVGQSGSGKSTIIGLIERF 1053 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~ 1053 (1133)
+|+|+|++||||||+++.|.++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFREL 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHHHC
Confidence 6899999999999999999983
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.005 Score=62.60 Aligned_cols=27 Identities=22% Similarity=0.471 Sum_probs=23.4
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhhhc
Q 041277 1028 EAGKSTALVGQSGSGKSTIIGLIERFY 1054 (1133)
Q Consensus 1028 ~~Ge~vaIVG~SGSGKSTL~~LL~R~y 1054 (1133)
.+|..++|+|++||||||+.+.|.+-+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998644
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=95.74 E-value=0.006 Score=61.99 Aligned_cols=36 Identities=25% Similarity=0.417 Sum_probs=28.6
Q ss_pred EEEEEcCCCCCHHHHHHHHh-hh----cCCCCC----eEEECCcc
Q 041277 1032 STALVGQSGSGKSTIIGLIE-RF----YDPLKG----DVKIDDRD 1067 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~-R~----ydp~~G----~I~IdG~d 1067 (1133)
+|+|||++|+|||||++.+. +- |.|+.| .+.++|..
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQS 66 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEE
Confidence 78999999999999996554 43 667777 78888844
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=95.73 E-value=0.005 Score=70.97 Aligned_cols=70 Identities=13% Similarity=0.125 Sum_probs=45.3
Q ss_pred EEEECCCCCCCccccCccEEe---eCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhccc
Q 041277 1007 VHFAYPARPDVMIFEGFSIKI---EAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIA 1081 (1133)
Q Consensus 1007 VsF~Y~~~~~~~vL~~isl~I---~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~is 1081 (1133)
+.+.+... +.||+-|. +.. ..+..++|+|+|||||||+++.|...+.+..+.|.+- |.. -+...+.+.++
T Consensus 11 ~~~G~~~~-g~~v~~d~-~~~~~~~~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~--D~~-~~~~~~~~~~g 83 (392)
T 4ag6_A 11 IVLGKDRD-GGLVLVDI-WKRGGDRTNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIII--DPE-REYKEMCRKLG 83 (392)
T ss_dssp EEEEECTT-SCEEEECT-TCCBTTBCCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE--ESS-CCSHHHHHHTT
T ss_pred cEEEEeCC-CCeEEEec-ccCcCccccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEE--eCC-cCHHHHHHHcC
Confidence 34555322 34555555 222 2577889999999999999999988777777888773 322 23444554444
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0072 Score=67.64 Aligned_cols=69 Identities=23% Similarity=0.319 Sum_probs=46.4
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhhhc-CC------CCCeEEECCcccCCCChhHHh---hcccccccccccccccHH
Q 041277 1026 KIEAGKSTALVGQSGSGKSTIIGLIERFY-DP------LKGDVKIDDRDIRSYHLRSLR---RHIALVSQEPTLFAGTIR 1095 (1133)
Q Consensus 1026 ~I~~Ge~vaIVG~SGSGKSTL~~LL~R~y-dp------~~G~I~IdG~dI~~i~l~~LR---~~isiV~Qdp~LF~gTIr 1095 (1133)
-+++|+.+.|.||+||||||++..+..-. .| ..+.++||..+. ++.+.++ +++++-+++ +.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~--~~~~~l~~~~~~~g~~~~~-------~~ 173 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT--FRWERIENMAKALGLDIDN-------VM 173 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CCHHHHHHHHHHTTCCHHH-------HH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC--CCHHHHHHHHHHhCCCHHH-------Hh
Confidence 58999999999999999999997777543 34 345678876652 2344443 345554432 45
Q ss_pred HHhccCCC
Q 041277 1096 ENIAYGAS 1103 (1133)
Q Consensus 1096 eNI~~g~~ 1103 (1133)
+|+.+.++
T Consensus 174 ~~l~~~~~ 181 (324)
T 2z43_A 174 NNIYYIRA 181 (324)
T ss_dssp HTEEEEEC
T ss_pred ccEEEEeC
Confidence 78776543
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0061 Score=61.46 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=23.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhhhcC
Q 041277 1030 GKSTALVGQSGSGKSTIIGLIERFYD 1055 (1133)
Q Consensus 1030 Ge~vaIVG~SGSGKSTL~~LL~R~yd 1055 (1133)
|..|.|+|+|||||||+.+.|..-..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999987553
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0053 Score=63.54 Aligned_cols=21 Identities=38% Similarity=0.681 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 041277 391 TVALVGGSGSGKSTVIALLQR 411 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~ 411 (1133)
.++|+|++||||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999998
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0087 Score=67.43 Aligned_cols=36 Identities=31% Similarity=0.508 Sum_probs=31.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhh-----------hcCCCCCeEEECC
Q 041277 1030 GKSTALVGQSGSGKSTIIGLIER-----------FYDPLKGDVKIDD 1065 (1133)
Q Consensus 1030 Ge~vaIVG~SGSGKSTL~~LL~R-----------~ydp~~G~I~IdG 1065 (1133)
|-+++|||++|+|||||++.|.+ -.+|+.|.+.++|
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 56899999999999999999998 3478888888776
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=95.58 E-value=0.002 Score=67.35 Aligned_cols=26 Identities=23% Similarity=0.419 Sum_probs=23.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcCCC
Q 041277 1032 STALVGQSGSGKSTIIGLIERFYDPL 1057 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~ydp~ 1057 (1133)
.|+|+|++||||||+++.|.+.+++.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~ 27 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAA 27 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999999988754
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=95.54 E-value=0.018 Score=63.18 Aligned_cols=28 Identities=25% Similarity=0.282 Sum_probs=24.9
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHHhc
Q 041277 385 TIPAGKTVALVGGSGSGKSTVIALLQRF 412 (1133)
Q Consensus 385 ~i~~g~~~~ivG~sGsGKSTll~~l~~~ 412 (1133)
-+++|..+.|.||+|+|||||...++..
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 5788999999999999999999998753
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=95.52 E-value=0.055 Score=61.23 Aligned_cols=29 Identities=24% Similarity=0.399 Sum_probs=25.0
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHHhcc
Q 041277 385 TIPAGKTVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 385 ~i~~g~~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
-+++|+++.|.||+|+|||||+.-++...
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQA 98 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHH
Confidence 46899999999999999999997776543
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=95.50 E-value=0.0078 Score=60.65 Aligned_cols=27 Identities=33% Similarity=0.550 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhccC
Q 041277 388 AGKTVALVGGSGSGKSTVIALLQRFYA 414 (1133)
Q Consensus 388 ~g~~~~ivG~sGsGKSTll~~l~~~~~ 414 (1133)
.|..+.|+|++||||||+.+.|...+.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 367899999999999999999998764
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.48 E-value=0.0054 Score=62.34 Aligned_cols=27 Identities=30% Similarity=0.474 Sum_probs=23.6
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHHhcc
Q 041277 387 PAGKTVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 387 ~~g~~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
.+|.+++|+|++||||||+.+.|...+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998654
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0062 Score=61.84 Aligned_cols=25 Identities=32% Similarity=0.570 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccCC
Q 041277 391 TVALVGGSGSGKSTVIALLQRFYAP 415 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~~~~ 415 (1133)
.++|+|++|+|||||++.+.+...+
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~ 28 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKS 28 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC---
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc
Confidence 6899999999999999999986544
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0066 Score=60.69 Aligned_cols=24 Identities=21% Similarity=0.131 Sum_probs=21.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcC
Q 041277 1032 STALVGQSGSGKSTIIGLIERFYD 1055 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~yd 1055 (1133)
.|+|+|++||||||+++.|...+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999987654
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0072 Score=61.38 Aligned_cols=26 Identities=19% Similarity=0.356 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhhhc
Q 041277 1029 AGKSTALVGQSGSGKSTIIGLIERFY 1054 (1133)
Q Consensus 1029 ~Ge~vaIVG~SGSGKSTL~~LL~R~y 1054 (1133)
++..|.|+|++||||||+.+.|.+-+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998755
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.42 E-value=0.11 Score=57.69 Aligned_cols=27 Identities=22% Similarity=0.277 Sum_probs=23.8
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHHhcc
Q 041277 387 PAGKTVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 387 ~~g~~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
.+..-+.|.||+|+|||+|++.+++..
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 455678999999999999999999875
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=95.42 E-value=0.1 Score=57.54 Aligned_cols=26 Identities=23% Similarity=0.433 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhcc
Q 041277 388 AGKTVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 388 ~g~~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
++..+.|.||+|+||||+++.++..+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45578899999999999999998765
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.41 E-value=0.0088 Score=68.42 Aligned_cols=28 Identities=29% Similarity=0.374 Sum_probs=24.7
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHHhccC
Q 041277 387 PAGKTVALVGGSGSGKSTVIALLQRFYA 414 (1133)
Q Consensus 387 ~~g~~~~ivG~sGsGKSTll~~l~~~~~ 414 (1133)
..+..+.|.||+|+||||+++.+.+...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 5677899999999999999999998764
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=95.38 E-value=0.005 Score=68.16 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhhh
Q 041277 1029 AGKSTALVGQSGSGKSTIIGLIERF 1053 (1133)
Q Consensus 1029 ~Ge~vaIVG~SGSGKSTL~~LL~R~ 1053 (1133)
++.+|||||++|+|||||++.|.+.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3448999999999999999999975
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=95.38 E-value=0.011 Score=66.56 Aligned_cols=62 Identities=15% Similarity=0.174 Sum_probs=41.7
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCC-eEEECCcccCCCChhHHhhcccccccccccc
Q 041277 1026 KIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKG-DVKIDDRDIRSYHLRSLRRHIALVSQEPTLF 1090 (1133)
Q Consensus 1026 ~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G-~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF 1090 (1133)
-+++|+.+.|.||+|||||||+..+..-.....| -++||...- .+. ...+++++.+|+..++
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~--~~~-~~a~~lG~~~~~l~i~ 119 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHA--LDP-EYAKKLGVDTDSLLVS 119 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC--CCH-HHHHHTTCCGGGCEEE
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC--cCH-HHHHHcCCCHHHeEEe
Confidence 5889999999999999999997766654433344 456665431 222 2355677777665544
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0068 Score=60.51 Aligned_cols=36 Identities=25% Similarity=0.177 Sum_probs=27.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHhhhcCCCC---CeEEECCc
Q 041277 1031 KSTALVGQSGSGKSTIIGLIERFYDPLK---GDVKIDDR 1066 (1133)
Q Consensus 1031 e~vaIVG~SGSGKSTL~~LL~R~ydp~~---G~I~IdG~ 1066 (1133)
..++|+|++||||||++..|.+.+.... |.|..|..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~ 43 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 43 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCC
Confidence 4689999999999999999988765432 45665543
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=95.34 E-value=0.0077 Score=69.41 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=31.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEEC
Q 041277 388 AGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILD 423 (1133)
Q Consensus 388 ~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~ 423 (1133)
.+..++|+|||||||||+++.++..+.+..+.|.+-
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~ 69 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIII 69 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEE
Confidence 577899999999999999999999887888887763
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.032 Score=57.85 Aligned_cols=43 Identities=21% Similarity=0.335 Sum_probs=29.1
Q ss_pred hCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcc
Q 041277 516 KAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLS 559 (1133)
Q Consensus 516 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~ 559 (1133)
.++.++++||.- .+++.....+.+.+.....+..+|+++++..
T Consensus 101 ~~~~vliiDe~~-~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 101 APFKIIFLDEAD-ALTADAQAALRRTMEMYSKSCRFILSCNYVS 143 (226)
T ss_dssp CSCEEEEEETGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred cCceEEEEeChh-hcCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 368899999964 4677766677777766444555666666553
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=95.31 E-value=0.0068 Score=61.34 Aligned_cols=38 Identities=21% Similarity=0.346 Sum_probs=30.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhhh----cCCCCC----eEEECCcc
Q 041277 1030 GKSTALVGQSGSGKSTIIGLIERF----YDPLKG----DVKIDDRD 1067 (1133)
Q Consensus 1030 Ge~vaIVG~SGSGKSTL~~LL~R~----ydp~~G----~I~IdG~d 1067 (1133)
.=+|++||++|+|||||++.|.+- |.|+.| .+.+++..
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~ 61 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFK 61 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECCEE
Confidence 347999999999999999999865 466777 66666643
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=95.30 E-value=0.0082 Score=60.00 Aligned_cols=23 Identities=35% Similarity=0.223 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 041277 391 TVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
+++|+|++||||||+.+.|...+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998765
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=95.27 E-value=0.0094 Score=61.74 Aligned_cols=30 Identities=30% Similarity=0.576 Sum_probs=23.5
Q ss_pred cCccEEeeCCCEEEEEcCCCCCHHHHHHHHh
Q 041277 1021 EGFSIKIEAGKSTALVGQSGSGKSTIIGLIE 1051 (1133)
Q Consensus 1021 ~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~ 1051 (1133)
++.++...+| ..+|+||+|||||||+.+|.
T Consensus 15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 3445555554 88999999999999998874
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=95.27 E-value=0.0036 Score=65.28 Aligned_cols=29 Identities=28% Similarity=0.481 Sum_probs=24.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccCCCccE
Q 041277 391 TVALVGGSGSGKSTVIALLQRFYAPLGGE 419 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~~~~~~G~ 419 (1133)
+++|+|++||||||+++.|.+.+.+....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~ 30 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRS 30 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCe
Confidence 68999999999999999999988654333
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=95.20 E-value=0.0098 Score=60.59 Aligned_cols=27 Identities=22% Similarity=0.234 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhhhcC
Q 041277 1029 AGKSTALVGQSGSGKSTIIGLIERFYD 1055 (1133)
Q Consensus 1029 ~Ge~vaIVG~SGSGKSTL~~LL~R~yd 1055 (1133)
+|..+.|+|++||||||+.+.|..-+.
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 367899999999999999999988543
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=95.18 E-value=0.0094 Score=60.61 Aligned_cols=44 Identities=32% Similarity=0.560 Sum_probs=30.2
Q ss_pred EEEEcCCCCcHHHHHHHHHhccC-------------CCccEEEECCeecCCCCHHHHhh
Q 041277 392 VALVGGSGSGKSTVIALLQRFYA-------------PLGGEIILDGVSIDKLQLKWLRS 437 (1133)
Q Consensus 392 ~~ivG~sGsGKSTll~~l~~~~~-------------~~~G~i~~~g~~~~~~~~~~~r~ 437 (1133)
+.|+||||||||||++.|...++ |-.|++ ||+|..-++.++..+
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~--~G~dY~Fvs~~eF~~ 60 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKS 60 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCC--BTTTBEECCHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCc--CCceeEeecHHHHHH
Confidence 78999999999999999876542 334543 566655555554443
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=95.18 E-value=0.006 Score=70.43 Aligned_cols=42 Identities=31% Similarity=0.360 Sum_probs=37.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCC
Q 041277 1029 AGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRS 1070 (1133)
Q Consensus 1029 ~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~ 1070 (1133)
++..+++||++||||||++..|.+.+.+..++|.+-+.|+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r 137 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYR 137 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccc
Confidence 578999999999999999999999999989999887777643
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=95.17 E-value=0.017 Score=58.55 Aligned_cols=34 Identities=41% Similarity=0.671 Sum_probs=25.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHh-c----cCCCcc----EEEECC
Q 041277 391 TVALVGGSGSGKSTVIALLQR-F----YAPLGG----EIILDG 424 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~-~----~~~~~G----~i~~~g 424 (1133)
.++|+|++|+|||||++.+.+ . +.|+.| .+.++|
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~ 64 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDG 64 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETT
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECC
Confidence 689999999999999976654 3 556655 444444
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=95.17 E-value=0.072 Score=71.02 Aligned_cols=39 Identities=26% Similarity=0.409 Sum_probs=31.2
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEE-EECC
Q 041277 386 IPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI-ILDG 424 (1133)
Q Consensus 386 i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i-~~~g 424 (1133)
+++|+.+.|.||+|+|||||+..++.......|.+ ++++
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~ 768 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 768 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEec
Confidence 89999999999999999999999987665444443 3344
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=95.16 E-value=0.013 Score=64.30 Aligned_cols=38 Identities=26% Similarity=0.299 Sum_probs=29.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCccc
Q 041277 1029 AGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDI 1068 (1133)
Q Consensus 1029 ~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI 1068 (1133)
.|..+.|+|+|||||||+++.|..-++ .|.+.|++-++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~D~~ 69 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDNDTF 69 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECTHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEechHh
Confidence 356789999999999999999987553 46788886333
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=95.15 E-value=0.011 Score=60.87 Aligned_cols=26 Identities=27% Similarity=0.167 Sum_probs=24.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhhhc
Q 041277 1029 AGKSTALVGQSGSGKSTIIGLIERFY 1054 (1133)
Q Consensus 1029 ~Ge~vaIVG~SGSGKSTL~~LL~R~y 1054 (1133)
+|..|+|+|++||||||+.+.|...+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999999876
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.14 E-value=0.011 Score=62.93 Aligned_cols=26 Identities=31% Similarity=0.379 Sum_probs=23.4
Q ss_pred eeCCCEEEEEcCCCCCHHHHHHHHhh
Q 041277 1027 IEAGKSTALVGQSGSGKSTIIGLIER 1052 (1133)
Q Consensus 1027 I~~Ge~vaIVG~SGSGKSTL~~LL~R 1052 (1133)
-++|..++|+|++||||||+.+.|.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 46788999999999999999999987
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=95.13 E-value=0.012 Score=64.61 Aligned_cols=35 Identities=26% Similarity=0.396 Sum_probs=28.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECC
Q 041277 388 AGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDG 424 (1133)
Q Consensus 388 ~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g 424 (1133)
+|..+.|+|||||||||+.+.|...++ .|.+.+++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 467899999999999999999987653 36677765
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.11 E-value=0.012 Score=62.72 Aligned_cols=28 Identities=32% Similarity=0.273 Sum_probs=23.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcCCCCC
Q 041277 1032 STALVGQSGSGKSTIIGLIERFYDPLKG 1059 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~ydp~~G 1059 (1133)
+|+|||++|+|||||++.|.+-..+.+|
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 6899999999999999999986554443
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.019 Score=60.06 Aligned_cols=51 Identities=22% Similarity=0.239 Sum_probs=33.7
Q ss_pred CCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCc-----------chhhcCCEEEEEe
Q 041277 517 APRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRL-----------STIRNADVIAVVQ 571 (1133)
Q Consensus 517 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~-----------~~~~~~d~i~~l~ 571 (1133)
+++++++||+-- ++.+.-+.+ ..+.+ .+.++|++-|+. +.+..||+|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~~~ve~l-~~L~~--~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDRICEVA-NILAE--NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTHHHHHH-HHHHH--TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHHHHHHH-HHHHh--CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 665432222 22323 389999999932 2344699998875
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=95.05 E-value=0.013 Score=61.43 Aligned_cols=23 Identities=39% Similarity=0.447 Sum_probs=21.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhh
Q 041277 1030 GKSTALVGQSGSGKSTIIGLIER 1052 (1133)
Q Consensus 1030 Ge~vaIVG~SGSGKSTL~~LL~R 1052 (1133)
+-.|+|+|++||||||+++.|.+
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999987
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=95.00 E-value=0.046 Score=60.06 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=21.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcc
Q 041277 389 GKTVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 389 g~~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
...+.+.||+|+|||+|.+.|+..+
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3467888999999999999999876
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=94.99 E-value=0.01 Score=66.86 Aligned_cols=69 Identities=19% Similarity=0.228 Sum_probs=45.8
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhhhc-CC------CCCeEEECCcccCCCChhHHhh---cccccccccccccccHH
Q 041277 1026 KIEAGKSTALVGQSGSGKSTIIGLIERFY-DP------LKGDVKIDDRDIRSYHLRSLRR---HIALVSQEPTLFAGTIR 1095 (1133)
Q Consensus 1026 ~I~~Ge~vaIVG~SGSGKSTL~~LL~R~y-dp------~~G~I~IdG~dI~~i~l~~LR~---~isiV~Qdp~LF~gTIr 1095 (1133)
-+++|+.+.|+||+||||||++..+..-. .| ..+.++||..+. .+.+.+++ ++++-++ .+.
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~--~~~~~l~~~~~~~g~~~~-------~~l 188 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENT--FRPDRLRDIADRFNVDHD-------AVL 188 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSC--CCHHHHHHHHHHTTCCHH-------HHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCC--CCHHHHHHHHHHcCCCHH-------HHH
Confidence 58999999999999999999998877642 22 345678887652 34444433 3443322 245
Q ss_pred HHhccCCC
Q 041277 1096 ENIAYGAS 1103 (1133)
Q Consensus 1096 eNI~~g~~ 1103 (1133)
+|+.+.++
T Consensus 189 ~~l~~~~~ 196 (343)
T 1v5w_A 189 DNVLYARA 196 (343)
T ss_dssp HTEEEEEC
T ss_pred hceeEeec
Confidence 77766543
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=94.99 E-value=0.0086 Score=60.58 Aligned_cols=27 Identities=22% Similarity=0.164 Sum_probs=23.8
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhhhc
Q 041277 1028 EAGKSTALVGQSGSGKSTIIGLIERFY 1054 (1133)
Q Consensus 1028 ~~Ge~vaIVG~SGSGKSTL~~LL~R~y 1054 (1133)
.++..|.|+|++||||||+++.|..-+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 467889999999999999999998655
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=94.99 E-value=0.035 Score=64.79 Aligned_cols=35 Identities=9% Similarity=0.049 Sum_probs=28.2
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhc
Q 041277 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRF 412 (1133)
Q Consensus 378 ~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~ 412 (1133)
-|+.+.--+++|+++.|.|++|+|||||+.-++.-
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~ 220 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 220 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Confidence 35555435899999999999999999998777653
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.99 E-value=0.012 Score=62.55 Aligned_cols=28 Identities=29% Similarity=0.375 Sum_probs=24.5
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHHhcc
Q 041277 386 IPAGKTVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 386 i~~g~~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
-++|.+++|+|++||||||+.+.|.+.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3578899999999999999999999754
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=94.96 E-value=0.011 Score=59.00 Aligned_cols=19 Identities=37% Similarity=0.573 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 041277 1032 STALVGQSGSGKSTIIGLI 1050 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL 1050 (1133)
.++|+|++||||||+++.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.96 E-value=0.01 Score=61.07 Aligned_cols=32 Identities=44% Similarity=0.566 Sum_probs=26.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCe
Q 041277 389 GKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGV 425 (1133)
Q Consensus 389 g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~ 425 (1133)
..+++|+|++||||||+.+.|... |-..+|..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~d 39 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDLD 39 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEccc
Confidence 357999999999999999999985 66666543
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=94.96 E-value=0.011 Score=60.37 Aligned_cols=27 Identities=15% Similarity=0.234 Sum_probs=24.0
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhhhc
Q 041277 1028 EAGKSTALVGQSGSGKSTIIGLIERFY 1054 (1133)
Q Consensus 1028 ~~Ge~vaIVG~SGSGKSTL~~LL~R~y 1054 (1133)
+++..|.|+|++||||||+.+.|..-+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467889999999999999999998755
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=94.96 E-value=0.012 Score=60.36 Aligned_cols=27 Identities=33% Similarity=0.380 Sum_probs=24.0
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhhhc
Q 041277 1028 EAGKSTALVGQSGSGKSTIIGLIERFY 1054 (1133)
Q Consensus 1028 ~~Ge~vaIVG~SGSGKSTL~~LL~R~y 1054 (1133)
.++..|+|+|++||||||+.+.|.+-+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998755
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.94 E-value=0.0059 Score=62.74 Aligned_cols=30 Identities=27% Similarity=0.339 Sum_probs=25.8
Q ss_pred EEeeCCCEEEEEcCCCCCHHHHHHHHhhhc
Q 041277 1025 IKIEAGKSTALVGQSGSGKSTIIGLIERFY 1054 (1133)
Q Consensus 1025 l~I~~Ge~vaIVG~SGSGKSTL~~LL~R~y 1054 (1133)
-+.+++..|+|+|++||||||+.+.|.+.+
T Consensus 7 ~~~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 7 EDLRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 345667899999999999999999998765
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 1133 | ||||
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 3e-95 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 2e-44 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 2e-90 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 2e-41 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 2e-85 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 7e-47 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 8e-84 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 6e-36 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 4e-80 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 9e-35 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 2e-69 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 1e-28 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 2e-46 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 7e-20 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 6e-42 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 4e-17 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 2e-38 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 5e-18 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 3e-38 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 5e-17 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 1e-37 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 1e-17 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 7e-32 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 7e-18 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 2e-31 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 3e-11 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 8e-31 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 9e-14 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 1e-30 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 4e-13 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 4e-30 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 7e-10 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 3e-29 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 8e-13 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 2e-28 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 1e-11 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 2e-27 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 3e-12 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 5e-26 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 3e-13 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 2e-21 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 2e-09 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 8e-14 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 0.001 | |
| d3b60a2 | 319 | f.37.1.1 (A:10-328) Multidrug resistance ABC trans | 8e-14 | |
| d3b60a2 | 319 | f.37.1.1 (A:10-328) Multidrug resistance ABC trans | 6e-06 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 4e-10 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 7e-10 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 2e-08 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 2e-04 |
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 301 bits (773), Expect = 3e-95
Identities = 131/246 (53%), Positives = 174/246 (70%), Gaps = 2/246 (0%)
Query: 354 LENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFY 413
+E G ++ V F Y E+ I KD L+I G+TVA VG SG GKST+I L+ RFY
Sbjct: 10 IEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY 68
Query: 414 APLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAA 473
G+I++DG +I LR+Q+GLV Q+ LF+ ++KENIL G+ A+ EEV+EAA
Sbjct: 69 DVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAA 128
Query: 474 KASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSE 533
K +NAH+FI LPQ YDT+VGERGV++SGGQKQR++IAR + P IL+LDEATSALD E
Sbjct: 129 KMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLE 188
Query: 534 SERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYT 593
SE ++QEALD RTT+I+AHRLSTI +AD I V+++G ++ETG+H ELI A+ G Y
Sbjct: 189 SESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELI-AKQGAYE 247
Query: 594 SLVRLQ 599
L +Q
Sbjct: 248 HLYSIQ 253
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 159 bits (403), Expect = 2e-44
Identities = 67/147 (45%), Positives = 89/147 (60%), Gaps = 3/147 (2%)
Query: 988 EDPEGHQPERIT-GNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTI 1046
++ G QP I G I++ +V F Y + I + ++ IE G++ A VG SG GKST+
Sbjct: 2 KNGVGAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTL 60
Query: 1047 IGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEI 1106
I LI RFYD G + ID +I+ + SLR I LV Q+ LF+ T++ENI G
Sbjct: 61 INLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTAT 120
Query: 1107 DESEIVEAAKAANAHDFIAGLNEGYDT 1133
DE E+VEAAK ANAHDFI L +GYDT
Sbjct: 121 DE-EVVEAAKMANAHDFIMNLPQGYDT 146
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 288 bits (738), Expect = 2e-90
Identities = 121/249 (48%), Positives = 172/249 (69%), Gaps = 3/249 (1%)
Query: 353 ILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRF 412
+++ G++EF+ V F YP R E ++ L IPAGKTVALVG SGSGKST+ +L+ RF
Sbjct: 6 VIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRF 64
Query: 413 YAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGK-EDASMEEVIE 471
Y G I++DG + + L LR+Q+ LVSQ LF ++ NI + + E+ S E++ E
Sbjct: 65 YDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEE 124
Query: 472 AAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALD 531
AA+ + A +FI ++ DT +GE GV +SGGQ+QRIAIARA+++ IL+LDEATSALD
Sbjct: 125 AARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALD 184
Query: 532 SESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGL 591
+ESER +Q ALD+ RT+++IAHRLSTI AD I VV+DG ++E G+H EL+ A+ G+
Sbjct: 185 TESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELL-AQHGV 243
Query: 592 YTSLVRLQT 600
Y L ++Q
Sbjct: 244 YAQLHKMQF 252
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 150 bits (381), Expect = 2e-41
Identities = 70/144 (48%), Positives = 92/144 (63%), Gaps = 2/144 (1%)
Query: 991 EGHQP-ERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGL 1049
EG + +R TG++E +NV F YP R +V ++KI AGK+ ALVG+SGSGKSTI L
Sbjct: 2 EGKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASL 60
Query: 1050 IERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDES 1109
I RFYD +G + +D D+R Y L SLR +ALVSQ LF T+ NIAY ++E
Sbjct: 61 ITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSRE 120
Query: 1110 EIVEAAKAANAHDFIAGLNEGYDT 1133
+I EAA+ A A DFI ++ G DT
Sbjct: 121 QIEEAARMAYAMDFINKMDNGLDT 144
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 274 bits (703), Expect = 2e-85
Identities = 104/246 (42%), Positives = 163/246 (66%), Gaps = 4/246 (1%)
Query: 355 ENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYA 414
++ G V+F+ V FAYP+RP+ ++ + T+ G+ ALVG +GSGKSTV ALLQ Y
Sbjct: 6 LHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ 65
Query: 415 PLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFG-KEDASMEEVIEAA 473
P GG+++LDG + + + ++L Q+ V QEP +F S++ENI +G + +MEE+ AA
Sbjct: 66 PTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAA 125
Query: 474 KASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSE 533
S AH+FI LPQ YDT+V E G Q+SGGQ+Q +A+ARA+I+ P +L+LD+ATSALD+
Sbjct: 126 VKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDAN 185
Query: 534 SERVVQEALDKAV--VGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGL 591
S+ V++ L ++ R+ ++I LS + AD I ++ G + E G+H +L+ + G
Sbjct: 186 SQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLM-EKKGC 244
Query: 592 YTSLVR 597
Y ++V+
Sbjct: 245 YWAMVQ 250
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 166 bits (421), Expect = 7e-47
Identities = 60/139 (43%), Positives = 88/139 (63%)
Query: 995 PERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFY 1054
P + G ++ Q+V FAYP RPDV++ +G + + G+ TALVG +GSGKST+ L++ Y
Sbjct: 5 PLHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLY 64
Query: 1055 DPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEA 1114
P G + +D + + Y R L R +A V QEP +F +++ENIAYG + + EI A
Sbjct: 65 QPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAA 124
Query: 1115 AKAANAHDFIAGLNEGYDT 1133
A + AH FI+GL +GYDT
Sbjct: 125 AVKSGAHSFISGLPQGYDT 143
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 270 bits (691), Expect = 8e-84
Identities = 111/241 (46%), Positives = 160/241 (66%), Gaps = 1/241 (0%)
Query: 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGE 419
++ F+ ++F Y +I + L+I G+ + +VG SGSGKST+ L+QRFY P G+
Sbjct: 1 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59
Query: 420 IILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAH 479
+++DG + WLR Q+G+V Q+ L SI +NI S+E+VI AAK + AH
Sbjct: 60 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 119
Query: 480 NFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQ 539
+FI +L + Y+T VGE+G +SGGQ+QRIAIARA++ P+IL+ DEATSALD ESE V+
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 540 EALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQ 599
+ K GRT IIIAHRLST++NAD I V++ G+++E G H EL+ LY+ L +LQ
Sbjct: 180 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 239
Query: 600 T 600
+
Sbjct: 240 S 240
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 134 bits (339), Expect = 6e-36
Identities = 50/133 (37%), Positives = 76/133 (57%), Gaps = 2/133 (1%)
Query: 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGD 1060
+I +N+ F Y +I + ++ I+ G+ +VG+SGSGKST+ LI+RFY P G
Sbjct: 1 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59
Query: 1061 VKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANA 1120
V ID D+ LRR + +V Q+ L +I +NI+ + +++ AAK A A
Sbjct: 60 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPG-MSVEKVIYAAKLAGA 118
Query: 1121 HDFIAGLNEGYDT 1133
HDFI+ L EGY+T
Sbjct: 119 HDFISELREGYNT 131
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 260 bits (665), Expect = 4e-80
Identities = 112/242 (46%), Positives = 162/242 (66%), Gaps = 4/242 (1%)
Query: 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI 420
+ + V FAY + I +D +A G SG GKST+ +LL+RFY P GEI
Sbjct: 2 LSARHVDFAYDDSEQ--ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 421 ILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKE-DASMEEVIEAAKASNAH 479
+DG ID + L+ RSQ+G VSQ+ A+ A +I+EN+ +G E D + E++ + + A
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 480 NFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQ 539
+F+ +P Q +T+VGERGV++SGGQ+QR+AIARA ++ P+IL+LDEAT++LDSESE +VQ
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 540 EALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQ 599
+ALD + GRTT++IAHRLSTI +AD I ++ GQ+ +G H+EL+ A LY V Q
Sbjct: 180 KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELV-ATHPLYAKYVSEQ 238
Query: 600 TT 601
T
Sbjct: 239 LT 240
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 131 bits (330), Expect = 9e-35
Identities = 43/132 (32%), Positives = 67/132 (50%), Gaps = 2/132 (1%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
+ ++V FAY + S + + A G SG GKSTI L+ERFY P G++
Sbjct: 2 LSARHVDFAYDDSEQI--LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 1062 KIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAH 1121
ID + I + L + R I VSQ+ + AGTIREN+ YG + + ++ + A A
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 1122 DFIAGLNEGYDT 1133
F+ + + +T
Sbjct: 120 SFVENMPDQLNT 131
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 231 bits (591), Expect = 2e-69
Identities = 69/270 (25%), Positives = 119/270 (44%), Gaps = 24/270 (8%)
Query: 332 ERIMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKT 391
E E++++V + + D + V F + P + K+ L I G+
Sbjct: 14 EGFGELLEKVQQSNGDR----KHSSDENNVSFSHLCLVG--NP---VLKNINLNIEKGEM 64
Query: 392 VALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFAT 451
+A+ G +GSGK++++ L+ G I G ++ SQ +
Sbjct: 65 LAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RVSFCSQFSWIMPG 111
Query: 452 SIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIA 511
+IKENI+FG KA I + +Q +T +GE GV +SGGQ+ RI++A
Sbjct: 112 TIKENIIFGVS-YDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLA 170
Query: 512 RAIIKAPRILLLDEATSALDSES-ERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVV 570
RA+ K + LLD LD + E+V + + K + +T I++ ++ +R AD I ++
Sbjct: 171 RAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILIL 230
Query: 571 QDGQVMETGSHDELIQAESGLYTSLVRLQT 600
G G+ EL + L+ T
Sbjct: 231 HQGSSYFYGTFSELQSLRPDFSSKLMGYDT 260
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 114 bits (287), Expect = 1e-28
Identities = 32/148 (21%), Positives = 57/148 (38%), Gaps = 20/148 (13%)
Query: 986 EPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKST 1045
+ + N+ ++ P + + ++ IE G+ A+ G +GSGK++
Sbjct: 23 VQQSNGDRKHSSDENNVSFSHLCLVG--NP---VLKNINLNIEKGEMLAITGSTGSGKTS 77
Query: 1046 IIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDE 1105
++ LI + +G +K R ++ SQ + GTI+ENI +G
Sbjct: 78 LLMLILGELEASEGIIKHSGR-------------VSFCSQFSWIMPGTIKENIIFGV--S 122
Query: 1106 IDESEIVEAAKAANAHDFIAGLNEGYDT 1133
DE KA I E +T
Sbjct: 123 YDEYRYKSVVKACQLQQDITKFAEQDNT 150
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 164 bits (417), Expect = 2e-46
Identities = 63/227 (27%), Positives = 110/227 (48%), Gaps = 9/227 (3%)
Query: 361 VEFKCVQFAYPSRPESI-IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGE 419
++ K V Y E I K+ L I G+ V+++G SGSGKST++ ++ P GE
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 420 IILDGVSIDKL----QLKWLRSQMGLVSQEPALFAT-SIKENILFGKEDASMEEVIEAAK 474
+ +D + + L K R ++G V Q+ L + EN+ + +
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 475 ASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSES 534
A ++ + + + Q+SGGQ+QR+AIARA+ P I+L D+ T ALDS++
Sbjct: 122 RKRALE-CLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKT 180
Query: 535 ERVVQEALDKAV--VGRTTIIIAHRLSTIRNADVIAVVQDGQVMETG 579
+ + L K G+T +++ H ++ R + I ++DG+V
Sbjct: 181 GEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREE 227
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 87.6 bits (217), Expect = 7e-20
Identities = 35/137 (25%), Positives = 58/137 (42%), Gaps = 7/137 (5%)
Query: 1002 IELQNVHFAYP-ARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGD 1060
I+L+NV Y + + ++ I+ G+ +++G SGSGKST++ +I P +G+
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 1061 VKIDDRDIRSYHLRSLRR----HIALVSQEPTLFAG-TIRENIAYGASDE-IDESEIVEA 1114
V ID+ L + I V Q+ L T EN+ + E
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 1115 AKAANAHDFIAGLNEGY 1131
K A +A L E +
Sbjct: 122 RKRALECLKMAELEERF 138
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 151 bits (383), Expect = 6e-42
Identities = 52/224 (23%), Positives = 103/224 (45%), Gaps = 21/224 (9%)
Query: 375 ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKW 434
ES + AG+ + LVG +G+GKST++A + G I G ++
Sbjct: 11 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATK 69
Query: 435 LRSQMGLVSQEPAL-FATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQV 493
L +SQ+ FAT + + + D + E++ + A D ++
Sbjct: 70 LALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALA----------LDDKL 119
Query: 494 GERGVQMSGGQKQRIAIARAIIK-------APRILLLDEATSALDSESERVVQEALDK-A 545
G Q+SGG+ QR+ +A +++ A ++LLLDE ++LD + + + L
Sbjct: 120 GRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALC 179
Query: 546 VVGRTTIIIAHRLS-TIRNADVIAVVQDGQVMETGSHDELIQAE 588
G ++ +H L+ T+R+A +++ G+++ +G +E++
Sbjct: 180 QQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPP 223
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 79.6 bits (196), Expect = 4e-17
Identities = 28/124 (22%), Positives = 54/124 (43%), Gaps = 9/124 (7%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
++LQ+V + S ++ AG+ LVG +G+GKST++ + KG +
Sbjct: 4 MQLQDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG-KGSI 55
Query: 1062 KIDDRDIRSYHLRSLRRHIALVSQEPTL-FAGTIRENIAYGASDEIDESEIVEAAKAANA 1120
+ + + ++ L H A +SQ+ T FA + + D+ + + A A
Sbjct: 56 QFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALAL 115
Query: 1121 HDFI 1124
D +
Sbjct: 116 DDKL 119
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 141 bits (357), Expect = 2e-38
Identities = 61/238 (25%), Positives = 107/238 (44%), Gaps = 14/238 (5%)
Query: 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGE 419
EV+ + + + + LTI G+ + L+G SG GK+T + ++ P G
Sbjct: 6 EVKLENLTKRFGNFT---AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGR 62
Query: 420 IILDGVSIDKLQLKWLRSQMGLVSQEPALFAT-SIKENILFGKEDASMEEVIEAAKASNA 478
I D L + +V Q A++ ++ ENI F + + + A
Sbjct: 63 IYFGDR--DVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWA 120
Query: 479 HNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVV 538
+ Q+ + + Q+SGGQ+QR+A+ARAI+ P +LL+DE S LD++ +
Sbjct: 121 AELL-QIEELLNRYPA----QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAM 175
Query: 539 QEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQAESGLYT 593
+ + K TTI + H D IAV+ GQ+++ GS E+ + ++
Sbjct: 176 RAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFV 233
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 82.5 bits (204), Expect = 5e-18
Identities = 30/119 (25%), Positives = 60/119 (50%), Gaps = 7/119 (5%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
++L+N+ + + ++ I+ G+ L+G SG GK+T + +I +P +G +
Sbjct: 7 VKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI 63
Query: 1062 KIDDRDIRSYHLRSLRRHIALVSQEPTLFAG-TIRENIAYGAS-DEIDESEIVEAAKAA 1118
DRD+ +L R+I++V Q ++ T+ ENIA+ + + EI + + A
Sbjct: 64 YFGDRDVT--YLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWA 120
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 140 bits (355), Expect = 3e-38
Identities = 65/247 (26%), Positives = 114/247 (46%), Gaps = 25/247 (10%)
Query: 361 VEFKCVQFAYPSRPESI-IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGE 419
++ + + +I + L +PAG+ ++G SG+GKST+I + P G
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 420 IILDGVSIDKL---QLKWLRSQMGLVSQEPALFAT-SIKENILFG------KEDASMEEV 469
+++DG + L +L R Q+G++ Q L ++ ++ N+ +D V
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 470 IEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSA 529
E + P +SGGQKQR+AIARA+ P++LL DEATSA
Sbjct: 122 TELLSLVGLGDKHDSYPS-----------NLSGGQKQRVAIARALASNPKVLLCDEATSA 170
Query: 530 LDSESERVVQEALDK--AVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586
LD + R + E L +G T ++I H + ++ D +AV+ +G+++E + E+
Sbjct: 171 LDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230
Query: 587 AESGLYT 593
Sbjct: 231 HPKTPLA 237
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 79.5 bits (196), Expect = 5e-17
Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 6/123 (4%)
Query: 1002 IELQNVHFAYPARP-DVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGD 1060
I+L N+ + + S+ + AG+ ++G SG+GKST+I + P +G
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 1061 VKIDDRDIRSY---HLRSLRRHIALVSQEPTLFA-GTIRENIAYGAS-DEIDESEIVEAA 1115
V +D +++ + L RR I ++ Q L + T+ N+A D + E+
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 1116 KAA 1118
Sbjct: 122 TEL 124
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 139 bits (353), Expect = 1e-37
Identities = 59/258 (22%), Positives = 112/258 (43%), Gaps = 38/258 (14%)
Query: 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGE 419
++ + Y + K L AG ++++G SGSGKST + + P G
Sbjct: 2 KLHVIDLHKRYGGHE---VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGA 58
Query: 420 IILDGVSIDKL-------------QLKWLRSQMGLVSQEPALFAT-SIKENILFG----- 460
II++G +I+ + QL+ LR+++ +V Q L++ ++ EN++
Sbjct: 59 IIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL 118
Query: 461 --KEDASMEEVIEAAKASN-AHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKA 517
+ + E ++ + P +SGGQ+QR++IARA+
Sbjct: 119 GLSKHDARERALKYLAKVGIDERAQGKYPV-----------HLSGGQQQRVSIARALAME 167
Query: 518 PRILLLDEATSALD-SESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQV 575
P +LL DE TSALD V++ A G+T +++ H + R+ + + + G++
Sbjct: 168 PDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 227
Query: 576 METGSHDELIQAESGLYT 593
E G +++
Sbjct: 228 EEEGDPEQVFGNPQSPRL 245
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 81.8 bits (202), Expect = 1e-17
Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 19/133 (14%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
+ + ++H Y + +G S++ AG +++G SGSGKST + I P +G +
Sbjct: 3 LHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 59
Query: 1062 KIDDRDIRSY-------------HLRSLRRHIALVSQEPTLFAG-TIRENIAYGA--SDE 1105
++ ++I LR LR + +V Q L++ T+ EN+
Sbjct: 60 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG 119
Query: 1106 IDESEIVEAAKAA 1118
+ + + E A
Sbjct: 120 LSKHDARERALKY 132
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 121 bits (305), Expect = 7e-32
Identities = 41/213 (19%), Positives = 95/213 (44%), Gaps = 27/213 (12%)
Query: 362 EFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEII 421
E + + Y + + + +TI G V G +G GK+T++ + + PL GEII
Sbjct: 4 EIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 59
Query: 422 LDGVSIDKLQLKWLRSQMGLVSQEPALFA-TSIKENILFGKE----DASMEEVIEAAKAS 476
+GV I K ++ ++ + +E + S+++ + + E+++A ++
Sbjct: 60 YNGVPITK-----VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESV 114
Query: 477 NAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESER 536
+ + + ++S G +R+ +A ++ I +LD+ A+D +S+
Sbjct: 115 EVLDLKK------------KLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKH 162
Query: 537 VVQEALDKAVVGRTTIIIAHRLSTIRNADVIAV 569
V +++ + + + +II+ R + DV
Sbjct: 163 KVLKSILEILKEKGIVIISSR-EELSYCDVNEN 194
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 81.1 bits (200), Expect = 7e-18
Identities = 26/126 (20%), Positives = 60/126 (47%), Gaps = 13/126 (10%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
+E++++ Y D + E ++ IE G G +G GK+T++ I + PLKG++
Sbjct: 3 LEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 58
Query: 1062 KIDDRDIRSYHLRSLRRHIALVSQEPTLFAG-TIRENIAYGASD---EIDESEIVEAAKA 1117
+ I ++ I + +E + ++ + + AS +++++EI++A ++
Sbjct: 59 IYNGVPI-----TKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALES 113
Query: 1118 ANAHDF 1123
D
Sbjct: 114 VEVLDL 119
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 121 bits (305), Expect = 2e-31
Identities = 55/241 (22%), Positives = 105/241 (43%), Gaps = 16/241 (6%)
Query: 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI 420
V V + ++ L + G+ + L+G SG GK+T + ++ P G+I
Sbjct: 4 VRLVDVWKVFGEVT---AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
Query: 421 ILDGVSI----DKLQLKWLRSQMGLVSQEPALFAT-SIKENILFGKEDASMEEVIEAAKA 475
+ + + + + +V Q AL+ ++ +NI F + + +
Sbjct: 61 YIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRV 120
Query: 476 SNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESE 535
+ L + + + ++SGGQ+QR+A+ RAI++ P++ L+DE S LD++
Sbjct: 121 REVAELL-GLTELLNRKPR----ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLR 175
Query: 536 RVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQAESGLY 592
++ L K G TTI + H D IAV+ G + + GS DE+ + +
Sbjct: 176 VRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTF 235
Query: 593 T 593
Sbjct: 236 V 236
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 62.6 bits (152), Expect = 3e-11
Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
+ L +V + +V S++++ G+ L+G SG GK+T + +I +P +G +
Sbjct: 4 VRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
Query: 1062 KIDDRDI----RSYHLRSLRRHIALVSQEPTLF 1090
I D+ + + + R IA+V Q L+
Sbjct: 61 YIGDKLVADPEKGIFVPPKDRDIAMVFQSYALY 93
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 119 bits (299), Expect = 8e-31
Identities = 63/243 (25%), Positives = 106/243 (43%), Gaps = 26/243 (10%)
Query: 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI 420
V+ + V A+ + KD L I G+ V VG SG GKST++ ++ G++
Sbjct: 1 VQLQNVTKAWGEVV---VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 57
Query: 421 ILDGVSIDKLQLKWLRSQMGLVSQEPALF-ATSIKENILFG------KEDASMEEVIEAA 473
+ +G+V Q AL+ S+ EN+ FG K++ + V + A
Sbjct: 58 FIGEK--RMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVA 115
Query: 474 KASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSE 533
+ + + + P+ +SGGQ+QR+AI R ++ P + LLDE S LD+
Sbjct: 116 EVLQLAHLLDRKPK-----------ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAA 164
Query: 534 SERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQAESG 590
++ + + GRT I + H AD I V+ G+V + G EL +
Sbjct: 165 LRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAD 224
Query: 591 LYT 593
+
Sbjct: 225 RFV 227
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 70.0 bits (171), Expect = 9e-14
Identities = 27/102 (26%), Positives = 52/102 (50%), Gaps = 6/102 (5%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
++LQNV A+ +V++ + ++ I G+ VG SG GKST++ +I GD+
Sbjct: 1 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 57
Query: 1062 KIDDRDIRSYHLRSLRRHIALVSQEPTLFAG-TIRENIAYGA 1102
I ++ + R + +V Q L+ ++ EN+++G
Sbjct: 58 FIGEKRMN--DTPPAERGVGMVFQSYALYPHLSVAENMSFGL 97
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 119 bits (300), Expect = 1e-30
Identities = 51/230 (22%), Positives = 99/230 (43%), Gaps = 34/230 (14%)
Query: 380 KDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWL-RSQ 438
+++ G ++G +GSGKST+I ++ F G + + I + L
Sbjct: 21 DGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 80
Query: 439 MGLVSQEPALFAT-SIKENILFG-------------------KEDASMEEVIEAAKASNA 478
+ Q P ++ EN+L G KE+ +E+ + +
Sbjct: 81 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILE---- 136
Query: 479 HNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVV 538
+L YD + G ++SGGQ + + I RA++ P+++++DE + + +
Sbjct: 137 ---FLKLSHLYDRKAG----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDI 189
Query: 539 QEALDK-AVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586
+ + G T +II HRL + N D + V+ +GQ++ G +E I+
Sbjct: 190 FNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIK 239
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 68.5 bits (167), Expect = 4e-13
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 5/103 (4%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
+ +N+ + + +G SI + G T ++G +GSGKST+I +I F +G V
Sbjct: 5 LRTENIVKYFG---EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV 61
Query: 1062 KIDDRDIRSYHLRSL-RRHIALVSQEPTLFAG-TIRENIAYGA 1102
+++DI + L I Q P T+ EN+ G
Sbjct: 62 YFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGE 104
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 117 bits (295), Expect = 4e-30
Identities = 55/213 (25%), Positives = 98/213 (46%), Gaps = 9/213 (4%)
Query: 380 KDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKL-QLKWLRSQ 438
K L +P G+ V L+G +G+GK+T ++ + G+II +G I R
Sbjct: 23 KGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82
Query: 439 MGLVSQEPALFAT-SIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERG 497
+ LV + +F ++ EN++ G + +E I+ F R L ++ G
Sbjct: 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPR-LKERLKQLGG--- 138
Query: 498 VQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDK-AVVGRTTIIIAH 556
+SGG++Q +AI RA++ P++L++DE + L V E + K G T +++
Sbjct: 139 -TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQ 197
Query: 557 RLSTIRN-ADVIAVVQDGQVMETGSHDELIQAE 588
A V++ GQ++ G EL+ E
Sbjct: 198 NALGALKVAHYGYVLETGQIVLEGKASELLDNE 230
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 58.4 bits (141), Expect = 7e-10
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 5/119 (4%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
+E+Q++H Y + +G +K+ G+ L+G +G+GK+T + I KG +
Sbjct: 7 LEVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63
Query: 1062 KIDDRDIRS-YHLRSLRRHIALVSQEPTLFAG-TIRENIAYGASDEIDESEIVEAAKAA 1118
+ +DI + R IALV + +F T+ EN+ GA + D+ I +
Sbjct: 64 IFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWI 122
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 115 bits (288), Expect = 3e-29
Identities = 54/231 (23%), Positives = 105/231 (45%), Gaps = 12/231 (5%)
Query: 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGG 418
G V K ++ + I K I G+ L+G +G+GK+T + ++ P G
Sbjct: 1 GAVVVKDLRKRIGKKE---ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG 57
Query: 419 EIILDGVSIDKLQLKWLRSQMGLVSQEPALFAT-SIKENILFGKEDASMEEVIEAAKASN 477
+ + G ++ + + +R + + +E + E + F +
Sbjct: 58 IVTVFGKNVVE-EPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVER 116
Query: 478 AHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERV 537
A L ++ +V S G +++ IARA++ PR+ +LDE TS LD + R
Sbjct: 117 ATEIAG-LGEKIKDRVS----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNARE 171
Query: 538 VQEALDKAVVGRTTIIIA-HRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586
V++ L +A TI+++ H + + D IA++ +G ++ETG+ +EL +
Sbjct: 172 VRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 222
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 67.3 bits (164), Expect = 8e-13
Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 6/121 (4%)
Query: 1000 GNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKG 1059
G + ++++ I +G S +IE G+ L+G +G+GK+T + +I P G
Sbjct: 1 GAVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG 57
Query: 1060 DVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAG-TIRENIAYGAS-DEIDESEIVEAAKA 1117
V + +++ +R+ I+ + +E + E + + A SEI E +
Sbjct: 58 IVTVFGKNVV-EEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVER 116
Query: 1118 A 1118
A
Sbjct: 117 A 117
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 112 bits (282), Expect = 2e-28
Identities = 67/229 (29%), Positives = 110/229 (48%), Gaps = 24/229 (10%)
Query: 379 FKDFCLTI---PAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWL 435
+F L + L+G +G+GKS + L+ P GE+ L+G I L
Sbjct: 11 LGNFRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT--PLPPE 68
Query: 436 RSQMGLVSQEPALFAT-SIKENILFGKEDASMEE----VIEAAKASNAHNFIRQLPQQYD 490
R +G V Q+ ALF S+ NI +G + E V E A+ + + + P
Sbjct: 69 RRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPA--- 125
Query: 491 TQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVV--G 548
++SGG++QR+A+ARA++ PR+LLLDE SA+D +++ V+ E L
Sbjct: 126 --------RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFD 177
Query: 549 RTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQAESGLYTSLV 596
+ + H L AD +AV+ +G+++E G EL A++G +
Sbjct: 178 VPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFL 226
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 63.9 bits (155), Expect = 1e-11
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 1024 SIKIEAGKS-TALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIAL 1082
++ E G+ L+G +G+GKS + LI P +G+V+++ DI L RR I
Sbjct: 17 NVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADI--TPLPPERRGIGF 74
Query: 1083 VSQEPTLFAG-TIRENIAYG 1101
V Q+ LF ++ NIAYG
Sbjct: 75 VPQDYALFPHLSVYRNIAYG 94
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 109 bits (274), Expect = 2e-27
Identities = 62/240 (25%), Positives = 117/240 (48%), Gaps = 24/240 (10%)
Query: 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI 420
+E + + + + + L + +G+ ++G +G+GK+ + L+ F+ P G I
Sbjct: 2 IEIESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 421 ILDGVSIDKLQLKWLRSQMGLVSQEPALF-ATSIKENI---LFGKEDASMEEVIEAAKAS 476
+LDG + L + + V Q +LF ++K+N+ + K+ + V++ A+
Sbjct: 58 LLDGKDVTDLS--PEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDL 115
Query: 477 NAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESER 536
+ + + P +SGG++QR+A+ARA++ P+ILLLDE SALD ++
Sbjct: 116 KIEHLLDRNPL-----------TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQE 164
Query: 537 VVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQAESGLYT 593
+E L T + I H + R AD IAVV DG++++ G +E+ +
Sbjct: 165 NAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRV 224
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 65.5 bits (159), Expect = 3e-12
Identities = 28/125 (22%), Positives = 61/125 (48%), Gaps = 9/125 (7%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
IE++++ + + S+K+E+G+ ++G +G+GK+ + LI F+ P G +
Sbjct: 2 IEIESLSRKWKNF----SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 1062 KIDDRDIRSYHLRSLRRHIALVSQEPTLFAG-TIRENIAYGASDE--IDESEIVEAAKAA 1118
+D +D+ L + IA V Q +LF +++N+ +G + D +++ A+
Sbjct: 58 LLDGKDVT--DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDL 115
Query: 1119 NAHDF 1123
Sbjct: 116 KIEHL 120
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 105 bits (264), Expect = 5e-26
Identities = 61/247 (24%), Positives = 116/247 (46%), Gaps = 25/247 (10%)
Query: 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGE 419
+ K V + + + + + + I G+ ++G SG+GK+T + ++ P GE
Sbjct: 3 RIIVKNVSKVFK-KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 420 IILDGVSI---DKLQLKWLRSQMGLVSQEPALFAT-SIKENILFGKEDASM------EEV 469
+ D + KL + ++G+V Q AL+ + ENI F + M + V
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV 121
Query: 470 IEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSA 529
E AK + H+ + P+ ++SG Q+QR+A+ARA++K P +LLLDE S
Sbjct: 122 EEVAKILDIHHVLNHFPR-----------ELSGAQQQRVALARALVKDPSLLLLDEPFSN 170
Query: 530 LDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586
LD+ + + + G T ++++H + I AD + V+ G++++ G ++L
Sbjct: 171 LDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230
Query: 587 AESGLYT 593
+
Sbjct: 231 NPVSIQV 237
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 68.6 bits (167), Expect = 3e-13
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 5/104 (4%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
I ++NV + + V+ + +I IE G+ ++G SG+GK+T + +I P G++
Sbjct: 4 IIVKNVSKVFK-KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
Query: 1062 KIDDRDI---RSYHLRSLRRHIALVSQEPTLFAG-TIRENIAYG 1101
DDR + + R I +V Q L+ T ENIA+
Sbjct: 63 YFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFP 106
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 90.4 bits (223), Expect = 2e-21
Identities = 15/191 (7%), Positives = 42/191 (21%), Gaps = 29/191 (15%)
Query: 392 VALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFAT 451
+ + G G GK+T++ + + V + + + + ++ +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSK 62
Query: 452 SIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIA 511
L G V + + A
Sbjct: 63 FFTSKKLVG-----------------------------SYGVNVQYFEELAIPILERAYR 93
Query: 512 RAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQ 571
A +++++DE + + I +
Sbjct: 94 EAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLP 153
Query: 572 DGQVMETGSHD 582
++E +
Sbjct: 154 GAVLIELTPEN 164
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 56.2 bits (134), Expect = 2e-09
Identities = 10/68 (14%), Positives = 21/68 (30%)
Query: 1034 ALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGT 1093
+ G+ G GK+T++ I ++ R+ R I ++ +
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKF 63
Query: 1094 IRENIAYG 1101
G
Sbjct: 64 FTSKKLVG 71
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 71.5 bits (173), Expect = 8e-14
Identities = 39/328 (11%), Positives = 104/328 (31%), Gaps = 10/328 (3%)
Query: 665 FRRLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYF----LTDHDEIKKKTS 720
+R + P + + + + + + I LT +++ T
Sbjct: 2 IKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTI 61
Query: 721 IYAFCFLGLAVFTLVINIIQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGA 780
+ I I+ Y + + IR+++ + + ++ ++
Sbjct: 62 AIGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVI 121
Query: 781 ICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWRLALVMIAVQPLVIICFY 840
+ + + + IA ++ F+ +L L + + P I+ Y
Sbjct: 122 SRVINDVEQTKDF--ILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVY 179
Query: 841 ARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIR 900
L+ ++ + +A AE E V + + +F+ + K +K +++
Sbjct: 180 VFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK 239
Query: 901 QSWYAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGS 960
+ + A ++ + G L G I+ L L + +
Sbjct: 240 HTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVA 299
Query: 961 MTTDIAKGSDAVGSVFAVMDRYTKIEPE 988
T + + ++ VF ++D + +
Sbjct: 300 SFTTLTQSFASMDRVFQLIDE----DYD 323
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 40.3 bits (92), Expect = 0.001
Identities = 36/311 (11%), Positives = 90/311 (28%), Gaps = 4/311 (1%)
Query: 34 FLMVLGYIGAIGDGFSTPLVLFLTSKFMNN-IGGVSNVPIDVFTHNINKNTVHLLYLALG 92
+ + I I L+ L ++ I + + H + L +
Sbjct: 14 YRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIV 73
Query: 93 SWVACFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVI 152
F+ Y T + +R + + ++ + +
Sbjct: 74 RPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQ--T 131
Query: 153 QDAISEKLPNFVMNASLFFGCYLVAFLMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARK 212
+D I L N ++ + F + +L + ++ ++ L L R+
Sbjct: 132 KDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRE 191
Query: 213 MRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGLKQGLAKGLAIGSN 272
+ + + I V +F E F + LK + +
Sbjct: 192 RSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAI 251
Query: 273 GVTFGIWSFLC-YYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAG 331
I + G+ + + GT+ A + + L + + +++ A+
Sbjct: 252 NTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASM 311
Query: 332 ERIMEMIKRVP 342
+R+ ++I
Sbjct: 312 DRVFQLIDEDY 322
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 71.5 bits (173), Expect = 8e-14
Identities = 49/324 (15%), Positives = 114/324 (35%), Gaps = 9/324 (2%)
Query: 665 FRRLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAF 724
FRRL AP + + L A + ++ F ++ +
Sbjct: 4 FRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGK-----TDRSVLLWM 58
Query: 725 CFLGLAVFTLVINIIQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSR 784
+ + + L ++ + R + D+ S+G + SR
Sbjct: 59 PLVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSR 118
Query: 785 LAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWRLALVMIAVQPLVIICFYARRV 844
+ D+ V S +V+ +++ F M + +W+L+++++ + P+V I
Sbjct: 119 ITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSK 178
Query: 845 LLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSWY 904
+S+S + + A + + + + F Q K +K R + ++
Sbjct: 179 RFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSA 238
Query: 905 AGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTD 964
+ I Q +AS A + +++ + F +++ R + ++
Sbjct: 239 SSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQ 298
Query: 965 IAKGSDAVGSVFAVMDRYTKIEPE 988
+G A ++FA++D E E
Sbjct: 299 FQRGMAACQTLFAILDS----EQE 318
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 47.2 bits (110), Expect = 6e-06
Identities = 48/310 (15%), Positives = 109/310 (35%), Gaps = 9/310 (2%)
Query: 34 FLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGS 93
+++ I I + S +L L +++ G ++ + ++ + L+ + L
Sbjct: 16 AGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLW--------MPLVVIGLMI 67
Query: 94 WVACFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQ 153
+ + M R + ST +++ ++ DS +
Sbjct: 68 LRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVA 127
Query: 154 DAISEKLPNFVMNASLFFGCYLVAFLMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKM 213
+ S L V + G +++ F W+L+I+ ++ I + + S+++ M
Sbjct: 128 SSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNM 187
Query: 214 RDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGLKQGLAKGLAIG-SN 272
++ + T AEQ + + V F G+ F G+K A ++
Sbjct: 188 QNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQ 247
Query: 273 GVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGE 332
+ +F+ Y S + GT+ V +S+ L + F MAA +
Sbjct: 248 LIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQ 307
Query: 333 RIMEMIKRVP 342
+ ++
Sbjct: 308 TLFAILDSEQ 317
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.1 bits (126), Expect = 2e-08
Identities = 23/173 (13%), Positives = 51/173 (29%), Gaps = 6/173 (3%)
Query: 390 KTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALF 449
+ V L G G GK+T+I G + + + + + +S
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPL 61
Query: 450 ATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQ-----LPQQYDTQVGERGVQMSGGQ 504
+ E +E + V++ + + V + +M
Sbjct: 62 SRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFS 121
Query: 505 KQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHR 557
+ I R + P ++L +V+E ++ V + +R
Sbjct: 122 QLFIQAVRQTLSTPGTIILGTIPVPKGKPLA-LVEEIRNRKDVKVFNVTKENR 173
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.2 bits (95), Expect = 2e-04
Identities = 12/99 (12%), Positives = 26/99 (26%)
Query: 1031 KSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLF 1090
+ L G G GK+T+I V + R + + +S
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPL 61
Query: 1091 AGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNE 1129
+ E + + + + A + +
Sbjct: 62 SRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADC 100
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1133 | |||
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 99.98 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.97 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.97 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.97 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.96 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 99.91 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 99.91 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 99.9 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 99.9 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 99.9 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 99.89 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 99.89 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 99.89 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 99.86 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 99.85 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 99.85 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 99.85 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 99.82 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 99.8 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.77 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 99.75 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.65 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.21 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.12 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.92 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.8 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 98.48 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 97.11 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.07 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 97.01 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.01 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.98 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.98 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 96.93 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.85 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.84 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.68 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.63 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.58 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 96.58 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.55 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.53 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.49 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.48 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.39 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.38 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.31 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 96.3 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.24 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.24 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 96.22 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.19 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.08 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.07 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 96.06 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.05 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.03 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 96.02 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.02 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.02 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.99 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.99 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.97 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 95.96 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 95.95 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 95.91 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 95.87 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 95.87 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 95.86 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.85 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 95.84 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.82 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 95.81 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.81 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 95.8 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 95.79 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 95.76 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 95.72 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 95.72 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 95.7 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 95.65 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 95.58 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 95.52 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.52 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 95.51 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.49 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.43 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.43 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 95.4 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 95.37 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.37 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 95.34 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.31 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 95.3 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 95.3 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.26 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.24 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 95.2 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 95.16 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 95.14 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.14 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.11 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.1 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.1 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 95.07 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.06 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 95.03 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.02 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 94.96 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.94 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.92 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 94.91 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.88 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 94.84 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 94.83 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 94.81 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 94.8 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 94.79 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 94.78 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 94.77 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 94.77 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 94.76 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 94.69 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 94.68 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 94.67 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 94.67 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 94.64 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 94.64 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 94.6 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 94.57 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 94.57 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 94.56 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 94.5 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 94.4 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 94.36 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 94.32 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 94.29 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 94.29 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.29 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 94.27 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 94.27 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 94.27 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 94.25 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 94.24 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 94.21 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 94.2 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 94.16 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 94.15 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 94.11 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 94.1 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 94.1 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.1 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 94.09 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 94.09 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 94.07 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 94.06 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 94.05 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 94.02 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 94.01 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 94.0 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 94.0 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 93.99 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 93.97 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 93.96 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 93.95 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 93.94 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 93.93 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 93.93 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 93.9 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 93.83 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 93.83 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.82 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 93.8 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 93.77 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 93.76 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 93.73 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.72 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 93.72 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 93.72 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 93.62 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.57 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 93.54 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 93.51 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 93.47 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 93.45 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.38 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 93.38 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 93.33 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 93.3 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 93.27 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 93.26 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 93.21 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 93.2 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.18 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 93.15 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 93.14 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 93.13 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 93.06 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 93.05 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 93.04 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 93.01 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 93.0 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 92.98 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.97 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 92.96 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 92.9 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 92.89 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 92.87 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 92.83 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 92.83 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 92.78 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 92.77 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 92.72 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 92.72 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 92.71 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 92.69 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 92.65 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 92.64 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 92.64 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 92.6 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 92.56 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 92.54 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 92.53 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 92.51 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 92.5 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 92.48 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 92.45 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 92.45 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 92.43 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 92.43 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 92.43 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 92.41 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 92.41 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 92.39 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.3 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 92.27 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 92.24 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 92.22 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 92.19 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 92.17 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 92.15 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 92.15 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 92.13 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 92.07 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 92.06 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 92.04 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 92.02 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.02 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 91.99 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 91.99 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 91.97 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 91.96 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 91.94 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 91.93 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 91.88 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 91.87 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 91.84 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 91.84 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 91.82 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 91.75 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 91.69 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 91.67 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 91.66 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 91.66 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 91.66 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 91.65 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 91.63 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 91.62 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 91.51 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 91.5 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 91.43 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 91.4 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 91.4 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 91.4 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 91.39 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 91.38 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 91.37 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 91.3 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 91.3 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 91.28 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 91.25 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 91.19 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 91.19 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 91.15 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 91.1 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 91.09 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 91.08 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 91.08 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 91.07 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 91.05 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 91.03 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 91.0 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 90.98 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 90.95 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 90.85 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 90.84 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 90.82 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 90.77 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 90.73 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 90.73 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 90.72 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 90.72 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 90.68 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 90.65 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 90.61 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 90.59 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 90.56 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 90.53 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 90.53 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 90.52 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 90.52 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 90.49 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 90.49 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 90.46 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 90.45 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 90.44 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 90.4 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 90.39 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 90.38 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 90.36 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 90.35 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 90.32 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 90.27 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 90.23 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 90.15 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 90.14 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 90.13 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 90.03 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 89.98 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 89.98 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 89.95 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 89.94 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 89.9 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 89.9 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 89.86 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 89.84 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 89.83 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 89.83 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 89.78 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 89.74 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 89.7 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 89.57 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 89.51 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 89.51 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 89.46 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 89.39 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 89.37 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 89.33 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 89.32 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 89.26 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 89.21 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 89.21 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 89.19 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 89.18 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 89.17 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 89.15 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 89.11 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 89.01 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 89.01 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 88.85 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 88.77 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 88.69 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 88.65 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 88.52 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 88.38 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 88.37 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 88.35 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 88.32 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 88.26 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 88.17 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 88.07 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 88.07 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 88.05 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 87.97 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 87.89 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 87.89 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 87.86 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 87.84 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 87.82 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 87.8 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 87.75 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 87.62 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 87.52 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 87.49 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 87.48 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 87.4 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 87.37 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 87.32 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 87.2 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 87.18 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 87.16 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 87.09 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 86.97 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 86.72 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 86.7 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 86.52 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 86.45 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 86.43 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 86.29 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 86.25 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 86.2 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 86.19 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 86.05 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 85.79 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 85.74 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 85.7 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 85.69 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 85.69 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 85.63 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 85.31 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 85.25 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 85.18 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 84.91 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 84.88 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 84.75 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 84.51 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 84.47 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 84.31 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 84.18 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 84.15 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 84.14 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 84.02 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 83.63 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 83.61 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 83.54 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 83.31 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 83.06 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 82.63 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 82.32 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 81.84 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 81.8 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 81.51 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 81.42 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 81.11 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 81.11 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 80.97 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 80.56 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 80.49 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 80.41 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 80.28 |
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.3e-66 Score=549.32 Aligned_cols=240 Identities=46% Similarity=0.782 Sum_probs=231.7
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
+|+|+||+|+|++. .+++|+||||+|++||++|||||||||||||+++|+|+++|++|+|.+||+|+.+++.+++|++|
T Consensus 1 eI~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i 79 (241)
T d2pmka1 1 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 79 (241)
T ss_dssp EEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CeEEEEEEEEeCCC-CcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceE
Confidence 48999999999754 45699999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCC
Q 041277 440 GLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPR 519 (1133)
Q Consensus 440 ~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~ 519 (1133)
|||||+|++|++||+|||.++.+..+.+++.++++.+++.+++..+|+|++|.+|++|.+|||||||||+|||||+++|+
T Consensus 80 ~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ 159 (241)
T d2pmka1 80 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 159 (241)
T ss_dssp EEECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred EEEecccccCCccccccccccCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcccc
Confidence 99999999999999999999999899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhccccchhhHHHHHhh
Q 041277 520 ILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQ 599 (1133)
Q Consensus 520 illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 599 (1133)
|||||||||+||+.+++.|.+.|+++.+++|+|+||||++.++.||||+||++|+|+++|+|+||++++++.|+++++.|
T Consensus 160 ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~l~~~Q 239 (241)
T d2pmka1 160 ILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 239 (241)
T ss_dssp EEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHHHHHHH
T ss_pred hhhhhCCccccCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHh
Confidence 99999999999999999999999999899999999999999999999999999999999999999986678999999877
Q ss_pred c
Q 041277 600 T 600 (1133)
Q Consensus 600 ~ 600 (1133)
.
T Consensus 240 ~ 240 (241)
T d2pmka1 240 S 240 (241)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=3.6e-66 Score=554.56 Aligned_cols=244 Identities=53% Similarity=0.824 Sum_probs=234.6
Q ss_pred ccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHH
Q 041277 355 ENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKW 434 (1133)
Q Consensus 355 ~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~ 434 (1133)
+..+|.|+|+||+|+|+++ ++++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||+|+++++.++
T Consensus 11 ~~~~g~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~ 89 (255)
T d2hyda1 11 EIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGS 89 (255)
T ss_dssp CCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHH
T ss_pred CCCCCEEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHH
Confidence 3446889999999999865 457999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHH
Q 041277 435 LRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAI 514 (1133)
Q Consensus 435 ~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal 514 (1133)
+|++|+||+|+|++|++||+|||.+|.++.++++++++++.+++++++..+|+|++|.+|++|.+|||||||||+|||||
T Consensus 90 lr~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal 169 (255)
T d2hyda1 90 LRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIF 169 (255)
T ss_dssp HHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHH
T ss_pred hhheeeeeeccccCCCCCHHHHHhccCcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999998899999999999999999999999999999999999999999999999999
Q ss_pred hhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhccccchhhHH
Q 041277 515 IKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTS 594 (1133)
Q Consensus 515 ~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 594 (1133)
+++|+|||||||||+||+++++.|.+.|+++.+++|+|+||||++.++.||||++|++|+|++.|+|+||++ +++.|++
T Consensus 170 ~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~-~~~~y~~ 248 (255)
T d2hyda1 170 LNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIA-KQGAYEH 248 (255)
T ss_dssp HHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHH-TTSHHHH
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHh-CCcHHHH
Confidence 999999999999999999999999999999988999999999999999999999999999999999999998 6899999
Q ss_pred HHHhhc
Q 041277 595 LVRLQT 600 (1133)
Q Consensus 595 ~~~~~~ 600 (1133)
+|+.|.
T Consensus 249 l~~~Q~ 254 (255)
T d2hyda1 249 LYSIQN 254 (255)
T ss_dssp HHTTTT
T ss_pred HHHHcC
Confidence 998764
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.2e-64 Score=544.23 Aligned_cols=244 Identities=49% Similarity=0.775 Sum_probs=233.4
Q ss_pred ccccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHH
Q 041277 355 ENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKW 434 (1133)
Q Consensus 355 ~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~ 434 (1133)
+...|.|+|+||+|+|+++ +.++|+||||+|++||++|||||||||||||+++|+|+++|++|+|.+||+|+++++.++
T Consensus 8 ~~~~g~I~~~nvsf~Y~~~-~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~ 86 (253)
T d3b60a1 8 DRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLAS 86 (253)
T ss_dssp SCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHH
T ss_pred CCCceEEEEEEEEEEeCCC-CCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhh
Confidence 3456789999999999865 457999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhceEEecCCCCccccHHHHHhcCCC-CCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHH
Q 041277 435 LRSQMGLVSQEPALFATSIKENILFGKE-DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARA 513 (1133)
Q Consensus 435 ~r~~i~~v~Q~~~l~~~ti~eni~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa 513 (1133)
+|++|+||||+|++|++|+++|+.++.+ ..+.++++++++.++++++++.+|+|++|.+|++|.+|||||||||+||||
T Consensus 87 ~r~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARa 166 (253)
T d3b60a1 87 LRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARA 166 (253)
T ss_dssp HHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHH
T ss_pred hhheEEEEeeccccCCcchhhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHH
Confidence 9999999999999999999999999874 568899999999999999999999999999999999999999999999999
Q ss_pred HhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhccccchhhH
Q 041277 514 IIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYT 593 (1133)
Q Consensus 514 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 593 (1133)
|+++|+|||||||||+||+.+++.|++.|+++.+++|+|+||||++.++.||+|+||++|+|+++|+|+||++ +++.|+
T Consensus 167 l~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~-~~~~y~ 245 (253)
T d3b60a1 167 LLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLA-QHGVYA 245 (253)
T ss_dssp HHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHH-HTSSHH
T ss_pred HhcCCCEEEeccccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHh-CCcHHH
Confidence 9999999999999999999999999999999988999999999999999999999999999999999999998 689999
Q ss_pred HHHHhhc
Q 041277 594 SLVRLQT 600 (1133)
Q Consensus 594 ~~~~~~~ 600 (1133)
++|+.|.
T Consensus 246 ~l~~~Q~ 252 (253)
T d3b60a1 246 QLHKMQF 252 (253)
T ss_dssp HHHHHTC
T ss_pred HHHHHcc
Confidence 9999874
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.6e-64 Score=539.97 Aligned_cols=241 Identities=43% Similarity=0.753 Sum_probs=228.8
Q ss_pred cccccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHH
Q 041277 356 NVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWL 435 (1133)
Q Consensus 356 ~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~ 435 (1133)
..+|.|+|+||+|+|+++++.++|+||||+|++||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++
T Consensus 7 ~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~ 86 (251)
T d1jj7a_ 7 HLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYL 86 (251)
T ss_dssp CCCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHH
T ss_pred cccceEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHH
Confidence 34678999999999987666679999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhceEEecCCCCccccHHHHHhcCCC-CCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHH
Q 041277 436 RSQMGLVSQEPALFATSIKENILFGKE-DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAI 514 (1133)
Q Consensus 436 r~~i~~v~Q~~~l~~~ti~eni~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal 514 (1133)
|++|+||+|+|++|++||+||+.+|.. ..+.+++.++++.++++++++.+|+|++|.++++|.+|||||||||+|||||
T Consensus 87 r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal 166 (251)
T d1jj7a_ 87 HRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARAL 166 (251)
T ss_dssp HHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHH
T ss_pred HHHhhhccccccccCcchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeecc
Confidence 999999999999999999999999854 5678889999999999999999999999999999999999999999999999
Q ss_pred hhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC--CCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhccccchhh
Q 041277 515 IKAPRILLLDEATSALDSESERVVQEALDKAVV--GRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLY 592 (1133)
Q Consensus 515 ~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 592 (1133)
+++|+|+|||||||+||+.++..+++.|.++.+ ++|+|+||||++.++.||||+||++|+|+++|+|+||++ +++.|
T Consensus 167 ~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~-~~~~y 245 (251)
T d1jj7a_ 167 IRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLME-KKGCY 245 (251)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHH-HTSHH
T ss_pred ccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHh-CCcHH
Confidence 999999999999999999999999999988653 899999999999999999999999999999999999998 68999
Q ss_pred HHHHH
Q 041277 593 TSLVR 597 (1133)
Q Consensus 593 ~~~~~ 597 (1133)
++|++
T Consensus 246 ~~l~~ 250 (251)
T d1jj7a_ 246 WAMVQ 250 (251)
T ss_dssp HHHHC
T ss_pred HHHhc
Confidence 99875
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=6.1e-64 Score=535.17 Aligned_cols=237 Identities=46% Similarity=0.760 Sum_probs=226.7
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
|+++||+|+|++. +++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||+|+++++.+++|++||
T Consensus 2 le~knvsf~Y~~~--~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 79 (242)
T d1mv5a_ 2 LSARHVDFAYDDS--EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (242)
T ss_dssp EEEEEEEECSSSS--SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEECCCC--CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheE
Confidence 7899999999753 35999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCccccHHHHHhcCC-CCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCC
Q 041277 441 LVSQEPALFATSIKENILFGK-EDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPR 519 (1133)
Q Consensus 441 ~v~Q~~~l~~~ti~eni~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~ 519 (1133)
||||+|++|++||+||+.++. +..+.++++++++.+++.+++..+|++++|.+|++|.+|||||||||+|||||+++|+
T Consensus 80 ~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ 159 (242)
T d1mv5a_ 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (242)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEccccccCCcchhhheecccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999885 4577889999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhccccchhhHHHHHhh
Q 041277 520 ILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQ 599 (1133)
Q Consensus 520 illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 599 (1133)
|||||||||+||+.+++.+++.|+++.+++|+|+||||++.++.||||+||++|+|+++|+|+||++ .++.|+++++.|
T Consensus 160 ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~-~~~~y~~l~~~Q 238 (242)
T d1mv5a_ 160 ILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVA-THPLYAKYVSEQ 238 (242)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHH-HCHHHHHHHHCC
T ss_pred EEEecCCccccCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHh-CChHHHHHHHHH
Confidence 9999999999999999999999999888999999999999999999999999999999999999998 689999999876
Q ss_pred c
Q 041277 600 T 600 (1133)
Q Consensus 600 ~ 600 (1133)
.
T Consensus 239 ~ 239 (242)
T d1mv5a_ 239 L 239 (242)
T ss_dssp C
T ss_pred h
Confidence 4
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=8.5e-53 Score=439.75 Aligned_cols=215 Identities=29% Similarity=0.514 Sum_probs=190.1
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
|+++|++++|++ .+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+|+.+.+.. |++||
T Consensus 2 i~v~nlsk~y~~----~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig 75 (229)
T d3d31a2 2 IEIESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIA 75 (229)
T ss_dssp EEEEEEEEECSS----CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCE
T ss_pred EEEEEEEEEeCC----EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchh--Hhcce
Confidence 789999999963 389999999999999999999999999999999999999999999999999987765 67899
Q ss_pred EEecCCCCccc-cHHHHHhcCCC---CCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhh
Q 041277 441 LVSQEPALFAT-SIKENILFGKE---DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIK 516 (1133)
Q Consensus 441 ~v~Q~~~l~~~-ti~eni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~ 516 (1133)
||||++.||+. ||+||+.|+.. ....+++.++++..++.++.++. +.+||||||||++|||||+.
T Consensus 76 ~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSGG~~QRvaiAraL~~ 144 (229)
T d3d31a2 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRN-----------PLTLSGGEQQRVALARALVT 144 (229)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSC-----------GGGSCHHHHHHHHHHHHTTS
T ss_pred eeccccccCccccHHHHHHHHHhhccccHHHHHHHHHHHhcchhhHhCC-----------hhhCCHHHhcchhhhhhhhc
Confidence 99999999965 99999988632 23466777777777665554443 45899999999999999999
Q ss_pred CCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhccccchhh
Q 041277 517 APRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQAESGLY 592 (1133)
Q Consensus 517 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 592 (1133)
+|++||||||||+||+.+++.+++.|+++. .|.|+|+|||+++.+.. ||||++|++|+|+++|+++|+++++...|
T Consensus 145 ~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~P~~~~ 223 (229)
T d3d31a2 145 NPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGR 223 (229)
T ss_dssp CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTH
T ss_pred cCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHH
Confidence 999999999999999999999999999863 48999999999998876 99999999999999999999987544433
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=1.6e-52 Score=440.50 Aligned_cols=218 Identities=29% Similarity=0.433 Sum_probs=183.7
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.|+++|++++|++ ..+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+|+.+.+.. |++|
T Consensus 6 ~I~v~nlsk~yg~---~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~i 80 (239)
T d1v43a3 6 EVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 80 (239)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred eEEEEEEEEEECC---EEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcc--cceE
Confidence 4899999999974 4599999999999999999999999999999999999999999999999999988764 5689
Q ss_pred eEEecCCCCccc-cHHHHHhcCCC--CCCHHH----HHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHH
Q 041277 440 GLVSQEPALFAT-SIKENILFGKE--DASMEE----VIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIAR 512 (1133)
Q Consensus 440 ~~v~Q~~~l~~~-ti~eni~~~~~--~~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iAR 512 (1133)
|||||++.+|+. ||+||+.|+.. ..+.++ +.++++..++.+ .......+||||||||++|||
T Consensus 81 g~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSGGq~QRvaiAr 149 (239)
T d1v43a3 81 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEE-----------LLNRYPAQLSGGQRQRVAVAR 149 (239)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGG-----------GTTSCTTTCCSSCHHHHHHHH
T ss_pred EEEeechhhcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-----------hhcCChhhCCHHHHHHHHHHh
Confidence 999999999965 99999998754 233333 344455554443 344455799999999999999
Q ss_pred HHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhccccc
Q 041277 513 AIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQAES 589 (1133)
Q Consensus 513 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 589 (1133)
||+.+|+|||||||||+||+.+...+++.++++. .|+|+|+|||+++.+.. ||||++|++|+|+++|+++|+.+++.
T Consensus 150 aL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~ 229 (239)
T d1v43a3 150 AIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPN 229 (239)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCS
T ss_pred hhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 9999999999999999999999999999999874 38999999999999876 99999999999999999999987555
Q ss_pred hhhH
Q 041277 590 GLYT 593 (1133)
Q Consensus 590 ~~~~ 593 (1133)
..|.
T Consensus 230 ~~~~ 233 (239)
T d1v43a3 230 SVFV 233 (239)
T ss_dssp BHHH
T ss_pred CHHH
Confidence 5553
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7e-53 Score=441.99 Aligned_cols=216 Identities=29% Similarity=0.459 Sum_probs=162.8
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
|+++||+++|++ ..+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+.. |++||
T Consensus 1 Iev~nv~k~yg~---~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig 75 (232)
T d2awna2 1 VQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVG 75 (232)
T ss_dssp EEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGG--GTCEE
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchh--hceee
Confidence 689999999974 4599999999999999999999999999999999999999999999999999887754 57899
Q ss_pred EEecCCCCccc-cHHHHHhcCCCC------CCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHH
Q 041277 441 LVSQEPALFAT-SIKENILFGKED------ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARA 513 (1133)
Q Consensus 441 ~v~Q~~~l~~~-ti~eni~~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa 513 (1133)
||||+|.+|+. ||+||+.++... ...+++.++++..++.++.++.| .+||||||||++||||
T Consensus 76 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~-----------~~LSGGqkQRvaiAra 144 (232)
T d2awna2 76 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGRT 144 (232)
T ss_dssp EECSSCCC---------------------CHHHHHHHHHHHHC--------------------------------CHHHH
T ss_pred eeccccccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999966 999999987431 12345677777887777666655 5899999999999999
Q ss_pred HhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhccccch
Q 041277 514 IIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQAESG 590 (1133)
Q Consensus 514 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~ 590 (1133)
|+.+|++||||||||+||+.+++.+++.|+++. .|+|+|+|||+++.+.. ||||++|++|+|++.|+++|+++++..
T Consensus 145 L~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~ 224 (232)
T d2awna2 145 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAD 224 (232)
T ss_dssp HHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSB
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCCC
Confidence 999999999999999999999999999998863 48999999999999877 999999999999999999999875544
Q ss_pred hh
Q 041277 591 LY 592 (1133)
Q Consensus 591 ~~ 592 (1133)
.|
T Consensus 225 ~~ 226 (232)
T d2awna2 225 RF 226 (232)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.6e-52 Score=441.63 Aligned_cols=221 Identities=28% Similarity=0.458 Sum_probs=191.2
Q ss_pred EEEEEEEEEcCCCCC-CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHH---Hh
Q 041277 361 VEFKCVQFAYPSRPE-SIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKW---LR 436 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~-~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~---~r 436 (1133)
|+++||+++|+.+.. ..+|+||||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+|+...+.++ +|
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhhh
Confidence 789999999975432 24799999999999999999999999999999999999999999999999999887654 56
Q ss_pred hhceEEecCCCCccc-cHHHHHhcCC-----CCC-CHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHH
Q 041277 437 SQMGLVSQEPALFAT-SIKENILFGK-----EDA-SMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIA 509 (1133)
Q Consensus 437 ~~i~~v~Q~~~l~~~-ti~eni~~~~-----~~~-~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~ 509 (1133)
++||||||++.+|+. ||+|||.++. +.. ..+++.++++.+++.++.++. +.+||||||||++
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~-----------~~~LSGG~~QRva 150 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSY-----------PSNLSGGQKQRVA 150 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSC-----------BSCCCHHHHHHHH
T ss_pred ccccccccccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCC-----------hhhCCHHHHHHHH
Confidence 789999999999975 9999998752 211 235567777777765544433 3589999999999
Q ss_pred HHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-C-CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 510 IARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-V-GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 510 iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
|||||+.+|++|||||||++||+.++..+++.|+++. + |.|+|+|||+++.+.. ||||++|++|+|++.|+++|+++
T Consensus 151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~ 230 (240)
T d3dhwc1 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230 (240)
T ss_dssp HHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTC
T ss_pred HhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999999874 3 8999999999999876 99999999999999999999987
Q ss_pred ccchhh
Q 041277 587 AESGLY 592 (1133)
Q Consensus 587 ~~~~~~ 592 (1133)
++...|
T Consensus 231 ~P~~~~ 236 (240)
T d3dhwc1 231 HPKTPL 236 (240)
T ss_dssp SSCCTT
T ss_pred CCCChH
Confidence 544433
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=5.6e-53 Score=460.40 Aligned_cols=219 Identities=29% Similarity=0.437 Sum_probs=196.4
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhh
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 438 (1133)
+.|+|+|++| . .++||+||||+|++||++||+||||||||||+++|+|+++|++|+|.++| +
T Consensus 37 ~~i~~~~~~~--~---g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-------------~ 98 (281)
T d1r0wa_ 37 NNVSFSHLCL--V---GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------R 98 (281)
T ss_dssp ---CHHHHHH--T---TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------C
T ss_pred CcEEEEEcCC--C---CCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC-------------E
Confidence 3455665544 2 23599999999999999999999999999999999999999999999998 5
Q ss_pred ceEEecCCCCccccHHHHHhcCCCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCC
Q 041277 439 MGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAP 518 (1133)
Q Consensus 439 i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~ 518 (1133)
|+||||++++|++||+|||.++.. ....+..++++.+++.+++..+|+++++.++++|.+|||||||||+|||||+++|
T Consensus 99 i~~v~Q~~~l~~~tv~eni~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p 177 (281)
T d1r0wa_ 99 VSFCSQFSWIMPGTIKENIIFGVS-YDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDA 177 (281)
T ss_dssp EEEECSSCCCCSEEHHHHHTTTSC-CCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCC
T ss_pred EEEEeccccccCceeecccccccc-ccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCc
Confidence 999999999999999999999864 5677888999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCcccCCChHHHHHHHHH-HHHHhCCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCcchhccccchhhHHHHH
Q 041277 519 RILLLDEATSALDSESERVVQEA-LDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVR 597 (1133)
Q Consensus 519 ~illlDE~ts~lD~~~~~~i~~~-l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 597 (1133)
+|||||||||+||+.+++.+.+. +....+++|+|+||||++.++.||||++|++|+|+++|+|+||++ .++.|...+.
T Consensus 178 ~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~-~~~~~~~~~~ 256 (281)
T d1r0wa_ 178 DLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQS-LRPDFSSKLM 256 (281)
T ss_dssp SEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHH-HCHHHHHHHH
T ss_pred cchhhcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEechHHHHHhCCEEEEEECCEEEEECCHHHHhc-cCcHHHHHHc
Confidence 99999999999999999888765 445567899999999999999999999999999999999999987 4666766543
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=1.1e-52 Score=441.96 Aligned_cols=221 Identities=27% Similarity=0.453 Sum_probs=190.7
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCC---HHHHh
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQ---LKWLR 436 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~---~~~~r 436 (1133)
.|+++||+++|+.. +..+|+||||+|++||+++|+||||||||||+++|.|+++|++|+|.++|+++...+ ....|
T Consensus 3 ~i~v~nlsk~y~~g-~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~r 81 (242)
T d1oxxk2 3 RIIVKNVSKVFKKG-KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (242)
T ss_dssp CEEEEEEEEEEGGG-TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEeEEEEECCC-CEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhh
Confidence 48999999999643 356899999999999999999999999999999999999999999999999997655 34457
Q ss_pred hhceEEecCCCCccc-cHHHHHhcCCCC--CCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHH
Q 041277 437 SQMGLVSQEPALFAT-SIKENILFGKED--ASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIA 509 (1133)
Q Consensus 437 ~~i~~v~Q~~~l~~~-ti~eni~~~~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~ 509 (1133)
++||||||+|.||+. ||+|||.++... .+. +++.++++.+++.++.++.| .+||||||||++
T Consensus 82 r~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p-----------~~LSGGqkQRva 150 (242)
T d1oxxk2 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP-----------RELSGAQQQRVA 150 (242)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHHHH
T ss_pred ccceEEeccccccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCCh-----------hhCCHHHHhHHH
Confidence 789999999999976 999999987542 232 34566666666655444444 589999999999
Q ss_pred HHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 510 IARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 510 iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
|||||+.+|++||||||||+||+.+...+++.|+++. .|.|+|+|||+++.+.. ||||++|++|+|+++|+++|+.+
T Consensus 151 iARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~ 230 (242)
T d1oxxk2 151 LARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230 (242)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999999999874 38999999999998865 99999999999999999999987
Q ss_pred ccchhh
Q 041277 587 AESGLY 592 (1133)
Q Consensus 587 ~~~~~~ 592 (1133)
++...|
T Consensus 231 ~P~~~~ 236 (242)
T d1oxxk2 231 NPVSIQ 236 (242)
T ss_dssp SCSSHH
T ss_pred CCCCHH
Confidence 544444
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=1.7e-52 Score=441.42 Aligned_cols=220 Identities=26% Similarity=0.415 Sum_probs=189.8
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHH----H
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKW----L 435 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~----~ 435 (1133)
.|+++||+++|++ ..+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+... .
T Consensus 3 ~i~v~nl~k~yg~---~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~ 79 (240)
T d1g2912 3 GVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred cEEEEeEEEEECC---EEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccc
Confidence 4899999999974 45999999999999999999999999999999999999999999999999997765433 3
Q ss_pred hhhceEEecCCCCccc-cHHHHHhcCCC--CCCH----HHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHH
Q 041277 436 RSQMGLVSQEPALFAT-SIKENILFGKE--DASM----EEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRI 508 (1133)
Q Consensus 436 r~~i~~v~Q~~~l~~~-ti~eni~~~~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 508 (1133)
|++||||||+|.||+. ||+||+.++.. ..+. +++.++++.+++.++.++. +.+||||||||+
T Consensus 80 ~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~-----------p~~LSGGqkQRv 148 (240)
T d1g2912 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRK-----------PRELSGGQRQRV 148 (240)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCC-----------GGGSCHHHHHHH
T ss_pred cccceecccchhhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCC-----------hhhCCHHHHHHH
Confidence 6789999999999976 99999998632 2222 3456666666665444333 458999999999
Q ss_pred HHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-C-CCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhc
Q 041277 509 AIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-V-GRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELI 585 (1133)
Q Consensus 509 ~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 585 (1133)
+|||||+.+|++|||||||++||+.++..+++.|+++. + |.|+|+|||+++.+.. ||||++|++|+|++.|+++|++
T Consensus 149 ~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~ 228 (240)
T d1g2912 149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVY 228 (240)
T ss_dssp HHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999999874 3 9999999999999876 9999999999999999999998
Q ss_pred cccchhhH
Q 041277 586 QAESGLYT 593 (1133)
Q Consensus 586 ~~~~~~~~ 593 (1133)
+++...|.
T Consensus 229 ~~P~~~~~ 236 (240)
T d1g2912 229 DKPANTFV 236 (240)
T ss_dssp HSCSBHHH
T ss_pred hCCCCHHH
Confidence 75555553
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=7e-52 Score=434.48 Aligned_cols=211 Identities=31% Similarity=0.469 Sum_probs=177.5
Q ss_pred EEEEEEEEEcCCCCC-CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHH----
Q 041277 361 VEFKCVQFAYPSRPE-SIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWL---- 435 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~-~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~---- 435 (1133)
|+++||+++|+.... ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||+++.+++.+++
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchhh
Confidence 789999999975322 247999999999999999999999999999999999999999999999999999987664
Q ss_pred hhhceEEecCCCCccc-cHHHHHhcCC-----CCCCHHHH----HHHHHHhchHHHHHhCCCcccccccCCCCCCChHHH
Q 041277 436 RSQMGLVSQEPALFAT-SIKENILFGK-----EDASMEEV----IEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQK 505 (1133)
Q Consensus 436 r~~i~~v~Q~~~l~~~-ti~eni~~~~-----~~~~~~~~----~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 505 (1133)
|++||||||+|.+|+. ||+||+.++. +..+.++. .+.++..++ ++. .....+.+||||||
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L-------~~~---~~~~~p~~LSGGqk 151 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAEL-------EER---FANHKPNQLSGGQQ 151 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTC-------CGG---GTTCCGGGSCHHHH
T ss_pred cceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhch-------hhh---hhcCChhhCCHHHH
Confidence 3579999999999865 9999998742 22333332 222333222 211 12334568999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhcCCEEEEEeCCeEEeecCc
Q 041277 506 QRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSH 581 (1133)
Q Consensus 506 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~ 581 (1133)
|||+|||||+.+|++||||||||+||+.++..+++.|+++. .|+|+|+|||+++.++.||||++|++|+|+++|+.
T Consensus 152 QRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 152 QRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHHHhCCEEEEEECCEEEEeccC
Confidence 99999999999999999999999999999999999999874 38999999999998877999999999999999875
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=4.5e-50 Score=430.72 Aligned_cols=221 Identities=27% Similarity=0.461 Sum_probs=189.1
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCC--------
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQ-------- 431 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~-------- 431 (1133)
.|+++|++++|++ ..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++...+
T Consensus 2 ~Lev~nl~k~yg~---~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 78 (258)
T d1b0ua_ 2 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 78 (258)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEEEEEEEECC---EEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhccc
Confidence 4899999999974 35999999999999999999999999999999999999999999999999986542
Q ss_pred -----HHHHhhhceEEecCCCCccc-cHHHHHhcCC---CCCCH----HHHHHHHHHhchHHHH-HhCCCcccccccCCC
Q 041277 432 -----LKWLRSQMGLVSQEPALFAT-SIKENILFGK---EDASM----EEVIEAAKASNAHNFI-RQLPQQYDTQVGERG 497 (1133)
Q Consensus 432 -----~~~~r~~i~~v~Q~~~l~~~-ti~eni~~~~---~~~~~----~~~~~~~~~~~~~~~i-~~l~~g~~t~~~~~g 497 (1133)
...+|++||||||+|.+|+. ||+||+.++. ...+. +++.++++.+++.+.. .+.|
T Consensus 79 ~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p----------- 147 (258)
T d1b0ua_ 79 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYP----------- 147 (258)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCG-----------
T ss_pred ccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCc-----------
Confidence 23567889999999999975 9999998752 12232 3455666666664433 2333
Q ss_pred CCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeE
Q 041277 498 VQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQV 575 (1133)
Q Consensus 498 ~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i 575 (1133)
.+||||||||++|||||+.+|++|||||||++||+.+.+.+++.|+++. +|+|+|+|||+++.+.. ||||+||++|+|
T Consensus 148 ~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~i 227 (258)
T d1b0ua_ 148 VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 227 (258)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred ccccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 4799999999999999999999999999999999999999999998875 58999999999999876 999999999999
Q ss_pred EeecCcchhccccchhhHH
Q 041277 576 METGSHDELIQAESGLYTS 594 (1133)
Q Consensus 576 ~~~g~~~~l~~~~~~~~~~ 594 (1133)
+++|+++|+++++...|.+
T Consensus 228 v~~g~~~ev~~~P~~~~~~ 246 (258)
T d1b0ua_ 228 EEEGDPEQVFGNPQSPRLQ 246 (258)
T ss_dssp EEEECHHHHHHSCCSHHHH
T ss_pred EEEcCHHHHHhCCCCHHHH
Confidence 9999999998765555543
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=9.3e-49 Score=416.93 Aligned_cols=218 Identities=23% Similarity=0.413 Sum_probs=182.5
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhh-h
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRS-Q 438 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~-~ 438 (1133)
-|+++|++++|++ ..+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+|+...+.+..++ .
T Consensus 6 ~Lev~~l~k~yg~---~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~g 82 (240)
T d1ji0a_ 6 VLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred EEEEeeEEEEECC---EEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhc
Confidence 4899999999974 35999999999999999999999999999999999999999999999999999988776544 5
Q ss_pred ceEEecCCCCccc-cHHHHHhcCCCCC-CHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhh
Q 041277 439 MGLVSQEPALFAT-SIKENILFGKEDA-SMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIK 516 (1133)
Q Consensus 439 i~~v~Q~~~l~~~-ti~eni~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~ 516 (1133)
|+|+||++.+|+. |++||+.++.... ..+...+..+.. +..+ .++.......+.+||||||||++|||||+.
T Consensus 83 i~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~ 156 (240)
T d1ji0a_ 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWI-----FSLF-PRLKERLKQLGGTLSGGEQQMLAIGRALMS 156 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHH-----HHHC-HHHHTTTTSBSSSSCHHHHHHHHHHHHHTT
T ss_pred ccccCcccccCCcccHHHHHHHHHHhcCCHHHHHHHHHHH-----HHHh-hChHHHHhCchhhCCHHHHHHHHHHHHHHh
Confidence 9999999999976 9999998764211 112222221111 1111 112223344556899999999999999999
Q ss_pred CCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 517 APRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 517 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
+|++|||||||++||+.+++.+++.|+++. +|+|+|++||+++.+.. ||||++|++|+|+++|+++|+.+
T Consensus 157 ~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~ 228 (240)
T d1ji0a_ 157 RPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228 (240)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred CCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHhc
Confidence 999999999999999999999999999874 58999999999998866 99999999999999999999986
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.4e-48 Score=420.32 Aligned_cols=217 Identities=23% Similarity=0.371 Sum_probs=182.3
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhh-h
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRS-Q 438 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~-~ 438 (1133)
-|+++||+++|++ .++|+||||++++||++||+||||||||||+++|+|+++|++|+|.++|+|+...++.+.++ .
T Consensus 4 iL~v~nlsk~yg~---~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~g 80 (254)
T d1g6ha_ 4 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 80 (254)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred eEEEEEEEEEECC---eEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhc
Confidence 3899999999974 35999999999999999999999999999999999999999999999999999999887655 4
Q ss_pred ceEEecCCCCccc-cHHHHHhcCCCC---------------CCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCCh
Q 041277 439 MGLVSQEPALFAT-SIKENILFGKED---------------ASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSG 502 (1133)
Q Consensus 439 i~~v~Q~~~l~~~-ti~eni~~~~~~---------------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSg 502 (1133)
|+|+||+|.+|.. ||+||+.++... ...++..+.+ .+.++.+ |.+........+|||
T Consensus 81 i~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LSg 153 (254)
T d1g6ha_ 81 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKA-----FKILEFL--KLSHLYDRKAGELSG 153 (254)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHH-----HHHHHHT--TCGGGTTSBGGGSCH
T ss_pred CCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHH-----HHHHHhc--CcchhccCchhhCCc
Confidence 9999999999865 999999886321 1111111111 1122222 223333445568999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecC
Q 041277 503 GQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGS 580 (1133)
Q Consensus 503 Gqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 580 (1133)
|||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||||+||++|+|+++|+
T Consensus 154 G~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g~ 233 (254)
T d1g6ha_ 154 GQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 233 (254)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCCEEEEEeCCEEEEEec
Confidence 99999999999999999999999999999999999999998874 68999999999999865 99999999999999999
Q ss_pred cchhcc
Q 041277 581 HDELIQ 586 (1133)
Q Consensus 581 ~~~l~~ 586 (1133)
++|+.+
T Consensus 234 ~~e~~~ 239 (254)
T d1g6ha_ 234 GEEEIK 239 (254)
T ss_dssp SHHHHH
T ss_pred HHHHhh
Confidence 999764
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=1.5e-48 Score=409.08 Aligned_cols=216 Identities=30% Similarity=0.467 Sum_probs=181.8
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
+++ ++.++|++- .+ |+||+++ ||+++|+||||||||||+++|+|+++|++|+|.++|+|+.+++.. |++||
T Consensus 3 l~v-~~~k~~g~~----~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig 73 (240)
T d2onka1 3 LKV-RAEKRLGNF----RL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIG 73 (240)
T ss_dssp EEE-EEEEEETTE----EE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCB
T ss_pred EEE-EEEEEECCE----EE-EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHH--HcCce
Confidence 455 567788632 23 8999995 689999999999999999999999999999999999999988764 67899
Q ss_pred EEecCCCCccc-cHHHHHhcCCCCCCHHH----HHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHh
Q 041277 441 LVSQEPALFAT-SIKENILFGKEDASMEE----VIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAII 515 (1133)
Q Consensus 441 ~v~Q~~~l~~~-ti~eni~~~~~~~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~ 515 (1133)
||||++.+|+. ||+|||.|+....+..+ +.++++.+++.+ .....+.+||||||||++|||||+
T Consensus 74 ~v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~gl~~-----------~~~~~~~~LSGG~kQRvaiAral~ 142 (240)
T d2onka1 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAH-----------LLDRKPARLSGGERQRVALARALV 142 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTT-----------TTTCCGGGSCHHHHHHHHHHHHHT
T ss_pred eeccchhhcccchhhHhhhhhhcccCHHHHHHHHHHHHHhcCcHh-----------hhhCChhhCCHHHHHHHHHHHHHh
Confidence 99999999975 99999999865544433 444444444433 344455689999999999999999
Q ss_pred hCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhccccchhh
Q 041277 516 KAPRILLLDEATSALDSESERVVQEALDKAV--VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQAESGLY 592 (1133)
Q Consensus 516 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 592 (1133)
.+|++||||||||+||+.++..+++.++++. .|.|+|+|||+++.+.. ||||++|++|+|++.|+++|+++.++...
T Consensus 143 ~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~~~~v 222 (240)
T d2onka1 143 IQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEV 222 (240)
T ss_dssp TCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCSSH
T ss_pred ccCCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEecHHHHhcCCCHHH
Confidence 9999999999999999999999999999874 38999999999999876 99999999999999999999987555544
Q ss_pred HHHH
Q 041277 593 TSLV 596 (1133)
Q Consensus 593 ~~~~ 596 (1133)
++++
T Consensus 223 ~~fl 226 (240)
T d2onka1 223 AEFL 226 (240)
T ss_dssp HHHG
T ss_pred HHHh
Confidence 4443
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=8.6e-48 Score=408.40 Aligned_cols=217 Identities=25% Similarity=0.413 Sum_probs=184.5
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhh
Q 041277 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438 (1133)
Q Consensus 359 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 438 (1133)
|.|+++|++++|+++ ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+|+.+ ....+|+.
T Consensus 1 gaI~v~nl~k~yg~~---~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~-~~~~~~~~ 76 (238)
T d1vpla_ 1 GAVVVKDLRKRIGKK---EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKL 76 (238)
T ss_dssp CCEEEEEEEEEETTE---EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTT
T ss_pred CCEEEEeEEEEECCE---EEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEeccc-ChHHHHhh
Confidence 569999999999753 59999999999999999999999999999999999999999999999999986 45678899
Q ss_pred ceEEecCCCCccc-cHHHHHhcCCC--CCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHh
Q 041277 439 MGLVSQEPALFAT-SIKENILFGKE--DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAII 515 (1133)
Q Consensus 439 i~~v~Q~~~l~~~-ti~eni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~ 515 (1133)
+|||||++.+|.. |++||+.+... ..+.+++.+..+.. ++.+ ++.....++..+||||||||++|||||+
T Consensus 77 i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~-----l~~~--~l~~~~~~~~~~lSgG~~qrv~iA~al~ 149 (238)
T d1vpla_ 77 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERA-----TEIA--GLGEKIKDRVSTYSKGMVRKLLIARALM 149 (238)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHH-----HHHH--CCGGGGGSBGGGCCHHHHHHHHHHHHHT
T ss_pred EeEeeeccccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHH-----HHhC--CCHHHHhhhhhhCCHHHHHHHHHHHHHh
Confidence 9999999999866 99999976421 22344443332221 1111 2333344455689999999999999999
Q ss_pred hCCCEEEEeCcccCCChHHHHHHHHHHHHHh-CCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhcc
Q 041277 516 KAPRILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586 (1133)
Q Consensus 516 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 586 (1133)
.+|+||||||||++||+.+++.+++.++++. +|+|+|++||+++.+.. ||||++|++|+|+++|+++|+.+
T Consensus 150 ~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~ 222 (238)
T d1vpla_ 150 VNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 222 (238)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred cCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999998874 68999999999999986 99999999999999999999975
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.9e-43 Score=374.89 Aligned_cols=208 Identities=24% Similarity=0.374 Sum_probs=180.9
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhce
Q 041277 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 361 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
++++||+++| +|+||||+|++||++||+||||||||||+++|+|++ |++|+|.++|+++..++...++...+
T Consensus 4 l~~~dv~~~~-------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~ 75 (231)
T d1l7vc_ 4 MQLQDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRA 75 (231)
T ss_dssp EEEEEECCTT-------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEE
T ss_pred EEEECcccCc-------eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHHHHHhhce
Confidence 7899997654 699999999999999999999999999999999976 68999999999999999999999999
Q ss_pred EEecCCCC-ccccHHHHHhcCCCCCC-HHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhh--
Q 041277 441 LVSQEPAL-FATSIKENILFGKEDAS-MEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIK-- 516 (1133)
Q Consensus 441 ~v~Q~~~l-~~~ti~eni~~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~-- 516 (1133)
|++|+... |..++.+|+.++..... .+.+.++++..++. ..++.+..+||||||||++|||||++
T Consensus 76 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~-----------~~~~~~~~~LSgG~~Qrv~iA~al~~~~ 144 (231)
T d1l7vc_ 76 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALD-----------DKLGRSTNQLSGGEWQRVRLAAVVLQIT 144 (231)
T ss_dssp EECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCT-----------TTTTSBGGGCCHHHHHHHHHHHHHHHHC
T ss_pred eeeccccCCccccHHHHhhhccchhhHHHHHHHHHHhcCCH-----------hHhCcChhhcCHHHHHHHHHHHHHHhhC
Confidence 99998764 67799999988765443 44455555555443 33455566899999999999999997
Q ss_pred -----CCCEEEEeCcccCCChHHHHHHHHHHHHH-hCCCeEEEEecCcchhhc-CCEEEEEeCCeEEeecCcchhccc
Q 041277 517 -----APRILLLDEATSALDSESERVVQEALDKA-VVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQA 587 (1133)
Q Consensus 517 -----~~~illlDE~ts~lD~~~~~~i~~~l~~~-~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 587 (1133)
+|+||||||||++||+.+++.+.+.++++ .+|+|+|++||+++.+.. ||||++|++|+|+++|+++|++++
T Consensus 145 p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~ 222 (231)
T d1l7vc_ 145 PQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222 (231)
T ss_dssp TTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCH
T ss_pred cccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEECCHHHHhCC
Confidence 77999999999999999999999999987 469999999999998765 999999999999999999999873
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.8e-40 Score=344.25 Aligned_cols=191 Identities=21% Similarity=0.408 Sum_probs=155.3
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhc
Q 041277 360 EVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439 (1133)
Q Consensus 360 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 439 (1133)
.|+++|++|+|+ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+ ++.++
T Consensus 2 ~lev~~ls~~y~----~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~-----~~~~i 72 (200)
T d1sgwa_ 2 KLEIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----VKGKI 72 (200)
T ss_dssp EEEEEEEEEESS----SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG-----GGGGE
T ss_pred eEEEEEEEEEeC----CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhH-----hcCcE
Confidence 489999999994 249999999999999999999999999999999999999999999999999864 56789
Q ss_pred eEEecCCCCccc-cHHHHHhcC----CCCCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHH
Q 041277 440 GLVSQEPALFAT-SIKENILFG----KEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAI 514 (1133)
Q Consensus 440 ~~v~Q~~~l~~~-ti~eni~~~----~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal 514 (1133)
+|+||++.++.. |++||+.+. ....+.+++.++++..++.+ ++ ++..+||||||||++||||+
T Consensus 73 ~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~----~~~~~LSgG~~qrv~ia~al 140 (200)
T d1sgwa_ 73 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD--------LK----KKLGELSQGTIRRVQLASTL 140 (200)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC--------TT----SBGGGSCHHHHHHHHHHHHT
T ss_pred EEEeecccCCCCcCHHHHHHHHHHhcCCccCHHHHHHHHHHcCCcc--------cc----cccCcCCCcHHHHHHHHHHH
Confidence 999999988765 999998642 22455677766665543311 22 23347999999999999999
Q ss_pred hhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEEEeC
Q 041277 515 IKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQD 572 (1133)
Q Consensus 515 ~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~ 572 (1133)
+++|+++||||||++||+++++.+++.+.+..+++++++++|+ +.+..||++.+|++
T Consensus 141 ~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~-~~l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 141 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSR-EELSYCDVNENLHK 197 (200)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEES-SCCTTSSEEEEGGG
T ss_pred hcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEe-chhhhcchhhheee
Confidence 9999999999999999999999999999887543333333333 23456999988754
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=1e-36 Score=325.39 Aligned_cols=134 Identities=46% Similarity=0.767 Sum_probs=128.1
Q ss_pred CcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHh
Q 041277 998 ITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLR 1077 (1133)
Q Consensus 998 ~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR 1077 (1133)
.+|+|+|+||+|+|+++ +.+||+||||+|++||++|||||||||||||+++|.|+|+|++|+|.|||+|+++++.++||
T Consensus 13 ~~g~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr 91 (255)
T d2hyda1 13 KQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLR 91 (255)
T ss_dssp CSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHH
T ss_pred CCCEEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhh
Confidence 46899999999999854 45799999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1078 RHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1078 ~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
++|+||||+|.||++||||||++|+| ..+++++++|++.+++++||++||+||||
T Consensus 92 ~~i~~v~Q~~~lf~~Ti~eNi~~g~~-~~~~~~~~~al~~~~l~~~i~~lp~gl~t 146 (255)
T d2hyda1 92 NQIGLVQQDNILFSDTVKENILLGRP-TATDEEVVEAAKMANAHDFIMNLPQGYDT 146 (255)
T ss_dssp HTEEEECSSCCCCSSBHHHHHGGGCS-SCCHHHHHHHHHHTTCHHHHHTSTTGGGC
T ss_pred heeeeeeccccCCCCCHHHHHhccCc-CCCHHHHHHHHHHhCCHHHHHhccccccc
Confidence 99999999999999999999999976 57899999999999999999999999997
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=9.4e-36 Score=315.60 Aligned_cols=131 Identities=38% Similarity=0.653 Sum_probs=125.0
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcc
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHI 1080 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~i 1080 (1133)
+|+|+||+|+|+++ +++||+||||+|++||++|||||||||||||+++|+|+|+|++|+|+|||+|+++++.++||++|
T Consensus 1 eI~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i 79 (241)
T d2pmka1 1 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 79 (241)
T ss_dssp EEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CeEEEEEEEEeCCC-CcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceE
Confidence 59999999999743 45699999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1081 ALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1081 siV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
++|||||+||++||+|||+++++ ..++++++++++.+++++++..+|+|+||
T Consensus 80 ~~v~Q~~~lf~~Ti~eNi~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~t 131 (241)
T d2pmka1 80 GVVLQDNVLLNRSIIDNISLANP-GMSVEKVIYAAKLAGAHDFISELREGYNT 131 (241)
T ss_dssp EEECSSCCCTTSBHHHHHCTTST-TCCHHHHHHHHHHHTCHHHHTTSTTGGGS
T ss_pred EEEecccccCCccccccccccCc-cccHHHHHHHHHHHhhHHHHHhhhcchhh
Confidence 99999999999999999999976 57899999999999999999999999986
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.7e-35 Score=314.84 Aligned_cols=137 Identities=43% Similarity=0.814 Sum_probs=130.4
Q ss_pred CCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHH
Q 041277 997 RITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSL 1076 (1133)
Q Consensus 997 ~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~L 1076 (1133)
..+|.|+|+||+|+||++++.++|+||||+|++||++|||||||||||||+++|.|+|+|++|+|+|||+|+++++.+++
T Consensus 7 ~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~ 86 (251)
T d1jj7a_ 7 HLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYL 86 (251)
T ss_dssp CCCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHH
T ss_pred cccceEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHH
Confidence 35689999999999987777789999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1077 RRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1077 R~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
|++|++|||+|.||++||+|||.+|.+...+++++++++++++++++++.||+|+||
T Consensus 87 r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~ 143 (251)
T d1jj7a_ 87 HRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDT 143 (251)
T ss_dssp HHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGC
T ss_pred HHHhhhccccccccCcchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccchh
Confidence 999999999999999999999999965567889999999999999999999999986
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=3.4e-35 Score=314.43 Aligned_cols=136 Identities=50% Similarity=0.799 Sum_probs=129.6
Q ss_pred CCcccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHH
Q 041277 997 RITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSL 1076 (1133)
Q Consensus 997 ~~~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~L 1076 (1133)
...|+|+|+||+|+|+++ +.++|+||||+|++||++|||||||||||||+++|+|||+|++|+|+|||+|++++++++|
T Consensus 9 ~~~g~I~~~nvsf~Y~~~-~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~ 87 (253)
T d3b60a1 9 RATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASL 87 (253)
T ss_dssp CCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHH
T ss_pred CCceEEEEEEEEEEeCCC-CCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhh
Confidence 356899999999999854 4579999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1077 RRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1077 R~~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
|++|++|||||.||++|+++|+.+|+++..+++++++|++.++++++|+.||+||||
T Consensus 88 r~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t 144 (253)
T d3b60a1 88 RNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDT 144 (253)
T ss_dssp HHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGS
T ss_pred hheEEEEeeccccCCcchhhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchh
Confidence 999999999999999999999999987778999999999999999999999999987
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=99.98 E-value=9e-34 Score=301.28 Aligned_cols=130 Identities=34% Similarity=0.623 Sum_probs=123.8
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhccc
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIA 1081 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~is 1081 (1133)
|+++||||+|++ +.+||+||||+|+|||++|||||||||||||+++|+|+|+|++|+|+|||.|+++++.+++|++|+
T Consensus 2 le~knvsf~Y~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 79 (242)
T d1mv5a_ 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (242)
T ss_dssp EEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEECCC--CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheE
Confidence 799999999974 346999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1082 LVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1082 iV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
+|||||.||++||+||+.++.....++++++++++.+++++++..+|+|+||
T Consensus 80 ~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (242)
T d1mv5a_ 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNT 131 (242)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGC
T ss_pred EEccccccCCcchhhheecccccccchhhHHHHHHHHHhhhhhccCcccccc
Confidence 9999999999999999999865567899999999999999999999999986
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.97 E-value=7.5e-29 Score=277.93 Aligned_cols=316 Identities=17% Similarity=0.239 Sum_probs=280.3
Q ss_pred chHHHHHhhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 041277 19 GSFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACF 98 (1133)
Q Consensus 19 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (1133)
+.++++++|.+++++ .++++.++.++.++..++.|++++.++|...... + .+.+....+.++++.++..++.+
T Consensus 2 k~~krl~~~~~~~k~-~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~--~----~~~l~~~~~~~~~~~~~~~i~~~ 74 (319)
T d3b60a2 2 QTFRRLWPTIAPFKA-GLIVAGIALILNAASDTFMLSLLKPLLDDGFGKT--D----RSVLLWMPLVVIGLMILRGITSY 74 (319)
T ss_dssp HHHHHHHHHHGGGHH-HHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTST--T----HHHHHHSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--C----HHHHHHHHHHHHHHHHHhhhhhh
Confidence 357889999877644 4556677777777778888899999999754331 1 12233334445556677788899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 041277 99 LEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAF 178 (1133)
Q Consensus 99 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (1133)
++.++..+.+.++..++|.++++|++++|.++|++ + ++|++++|+++|++.+.+.+...+...+..+..+++++++++
T Consensus 75 ~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~-~-~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 152 (319)
T d3b60a2 75 ISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDK-Q-STGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMF 152 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCSTHHHH-S-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhccccchhhHHHHhhcccchhhccc-c-ccccccccccccccccccccccccchhhhhhhhhhhHHHHHH
Confidence 99999999999999999999999999999999996 6 999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHH
Q 041277 179 LMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLG 258 (1133)
Q Consensus 179 ~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~ 258 (1133)
.++|.+++++++.+|+..++.....++.++..++.++..++.++.+.|.++|+++||+|++|+.+.+++++..++..+..
T Consensus 153 ~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~ 232 (319)
T d3b60a2 153 YYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQG 232 (319)
T ss_dssp HHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccchhhhhhHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHhhcCCceeeehhccchhhhhhhhhhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041277 259 LKQGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEM 337 (1133)
Q Consensus 259 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~ 337 (1133)
.+.....+...+ ..++..+..++++++|++++.+|.+|+|++++++.++.....|+..+...+..++++.+|.+|++++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~el 312 (319)
T d3b60a2 233 MKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAI 312 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccchhhhhhhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988888887 7777778888889999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCC
Q 041277 338 IKRVPK 343 (1133)
Q Consensus 338 l~~~~~ 343 (1133)
+|.+||
T Consensus 313 ld~~~E 318 (319)
T d3b60a2 313 LDSEQE 318 (319)
T ss_dssp HHSCCS
T ss_pred hcCCCC
Confidence 998765
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.97 E-value=8.1e-29 Score=278.34 Aligned_cols=320 Identities=13% Similarity=0.111 Sum_probs=274.4
Q ss_pred HHHHHhhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCChhh-hhhhHHHHHHHHHHHHHHHHHHHHH
Q 041277 21 FRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDV-FTHNINKNTVHLLYLALGSWVACFL 99 (1133)
Q Consensus 21 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (1133)
+|++++|.+++++ .++++++++++.++...+.|++++.++|.+.......... ...........++++.++..++.++
T Consensus 2 lKrl~~~~k~~k~-~~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 80 (323)
T d2hyda2 2 IKRYLQFVKPYKY-RIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFI 80 (323)
T ss_dssp HHHHHHHHGGGHH-HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999877644 4455666666666666777889999999875432111110 0011111122233445566777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCCCChhHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 041277 100 EGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFL 179 (1133)
Q Consensus 100 ~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (1133)
+.++..+.+.++..++|.++++|++++|.++|++ + ++|++++|+++|++.+++.+...+...+..+..+++.++++++
T Consensus 81 ~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~-~-~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~ 158 (323)
T d2hyda2 81 RQYLAQWTSNKILYDIRKKLYNHLQALSARFYAN-N-QVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFF 158 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHT-S-CHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhhhccccccccc-c-cccccccccchhhhhhccchhhhhhhcchhhhhhhhhhhhhhh
Confidence 8999999999999999999999999999999996 6 8999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHH
Q 041277 180 MLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVQLGL 259 (1133)
Q Consensus 180 ~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 259 (1133)
++|.++++.++.+|+..++...+.++.++..++.++..++..+.+.|.++|+++||+|++|+.+.++|++..++..+...
T Consensus 159 ~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~ 238 (323)
T d2hyda2 159 LDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRAL 238 (323)
T ss_dssp HCTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCCchhhhHhhhccchhhhhcccccccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041277 260 KQGLAKGLAIG-SNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFAVGASIAVGGLALGAGLPNLKYFSEAMAAGERIMEMI 338 (1133)
Q Consensus 260 ~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~v~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l 338 (1133)
|.....+...+ ...+..+..++++++|++++.+|.+|+|+++++..+......|+..+...+..++++.+|++||.+++
T Consensus 239 k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elL 318 (323)
T d2hyda2 239 KHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLI 318 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhccccccccchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888877 77778888888999999999999999999999999988888999999999999999999999999999
Q ss_pred ccCCC
Q 041277 339 KRVPK 343 (1133)
Q Consensus 339 ~~~~~ 343 (1133)
|++||
T Consensus 319 d~e~e 323 (323)
T d2hyda2 319 DEDYD 323 (323)
T ss_dssp TCCCS
T ss_pred CCCCC
Confidence 97653
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.97 E-value=1.2e-27 Score=267.96 Aligned_cols=316 Identities=17% Similarity=0.277 Sum_probs=288.7
Q ss_pred hHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 041277 663 PSFRRLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINIIQHY 742 (1133)
Q Consensus 663 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (1133)
+.+|+++++.+|+++.+.+++++.++.+++.+..|++++.++|........ ....++.+.++++.++..++.+++.+
T Consensus 2 k~~krl~~~~~~~k~~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~~---~~l~~~~~~~~~~~~~~~i~~~~~~~ 78 (319)
T d3b60a2 2 QTFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDR---SVLLWMPLVVIGLMILRGITSYISSY 78 (319)
T ss_dssp HHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTH---HHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH---HHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 467889999999999999999988888888899999999988865432211 12233445666777788889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhH
Q 041277 743 NFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAW 822 (1133)
Q Consensus 743 ~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~w 822 (1133)
+..+.+.++..++|+++++|++++|++||+ ++++|++++|+++|++.+++.+...+...+..++.++++++.++.++|
T Consensus 79 ~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~--~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 156 (319)
T d3b60a2 79 CISWVSGKVVMTMRRRLFGHMMGMPVAFFD--KQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSW 156 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCSTHHH--HSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhhhhccccchhhHHHHhhcccchhhcc--ccccccccccccccccccccccccccchhhhhhhhhhhHHHHHHhhhc
Confidence 999999999999999999999999999998 579999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHHHH
Q 041277 823 RLALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQS 902 (1133)
Q Consensus 823 ~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~ 902 (1133)
.+++++++.+|+..+......++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.+++++..++..+...+..
T Consensus 157 ~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 236 (319)
T d3b60a2 157 QLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMV 236 (319)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHhhcCCceeeehhccchhhhhhhhhhhhhhHHHHHHH
Confidence 99999999999999999999999999899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccC
Q 041277 903 WYAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRY 982 (1133)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~~~ 982 (1133)
+......+....+..+..++++++|++++.+|.+|+|++++++.+......|+..+......++++.++.+|+++++|++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~ 316 (319)
T d3b60a2 237 SASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSE 316 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHhcccchhhhhhhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred C
Q 041277 983 T 983 (1133)
Q Consensus 983 ~ 983 (1133)
|
T Consensus 317 ~ 317 (319)
T d3b60a2 317 Q 317 (319)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.96 E-value=2e-27 Score=266.87 Aligned_cols=317 Identities=14% Similarity=0.186 Sum_probs=282.3
Q ss_pred HHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhh----hhHHHHHHHHHHHHHHHHHHHH
Q 041277 665 FRRLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKK----TSIYAFCFLGLAVFTLVINIIQ 740 (1133)
Q Consensus 665 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 740 (1133)
+|+++++.+|+++.+..+++++++.+++....|++++.++|............. .......++++.++..++.+++
T Consensus 2 lKrl~~~~k~~k~~~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 81 (323)
T d2hyda2 2 IKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIR 81 (323)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888999999999988888888888888899999999987654321111111 1112223344556667788889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCChhHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 041277 741 HYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFI 820 (1133)
Q Consensus 741 ~~~~~~~~~~~~~~Lr~~l~~~ll~~p~~fFd~~~~~~G~l~~r~s~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 820 (1133)
.++..+.+.++..++|.++++|++++|++||+ ++++|++++|+++|++.+++.+...+...+..++.++++++.++++
T Consensus 82 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~--~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 159 (323)
T d2hyda2 82 QYLAQWTSNKILYDIRKKLYNHLQALSARFYA--NNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFL 159 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH--TSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhhhcccccccc--cccccccccccchhhhhhccchhhhhhhcchhhhhhhhhhhhhhhh
Confidence 99999999999999999999999999999999 5789999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhhchHHHHHHHHHHhhcHHHHHHH
Q 041277 821 AWRLALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIR 900 (1133)
Q Consensus 821 ~w~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~ 900 (1133)
+|.+++++++..|+..+......++.++..++..+..++..+.+.|.++|+++||+|+.|+++.++|++..++..+...+
T Consensus 160 ~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k 239 (323)
T d2hyda2 160 DVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK 239 (323)
T ss_dssp CTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCCchhhhHhhhccchhhhhcccccccchhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhc
Q 041277 901 QSWYAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMD 980 (1133)
Q Consensus 901 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~l~ 980 (1133)
..+.......+...+..+..++++++|++++.+|.+|+|+++++..+......|+..+.....+++++..+++|+.+++|
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd 319 (323)
T d2hyda2 240 HTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLID 319 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhhhhhhccccccccchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCC
Q 041277 981 RYT 983 (1133)
Q Consensus 981 ~~~ 983 (1133)
++|
T Consensus 320 ~e~ 322 (323)
T d2hyda2 320 EDY 322 (323)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=99.91 E-value=2.4e-25 Score=231.40 Aligned_cols=124 Identities=22% Similarity=0.456 Sum_probs=110.4
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhccc
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIA 1081 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~is 1081 (1133)
|+++||+++|++ .+|+||||+|++||.+||+||||||||||+++|.|+.+|++|+|++||.|+.+++.. |++||
T Consensus 2 i~v~nlsk~y~~----~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig 75 (229)
T d3d31a2 2 IEIESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIA 75 (229)
T ss_dssp EEEEEEEEECSS----CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCE
T ss_pred EEEEEEEEEeCC----EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchh--Hhcce
Confidence 799999999952 379999999999999999999999999999999999999999999999999987765 78999
Q ss_pred ccccccccccc-cHHHHhccCCC--CCCCHHHHHHHHHHcchHHHHhhccccc
Q 041277 1082 LVSQEPTLFAG-TIRENIAYGAS--DEIDESEIVEAAKAANAHDFIAGLNEGY 1131 (1133)
Q Consensus 1082 iV~Qdp~LF~g-TIreNI~~g~~--~~~sdeei~~Al~~a~l~dfI~~LP~G~ 1131 (1133)
+|||+|.||.. |++|||.++.. ....++++.++++..++.++.++.|..|
T Consensus 76 ~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 128 (229)
T d3d31a2 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTL 128 (229)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGS
T ss_pred eeccccccCccccHHHHHHHHHhhccccHHHHHHHHHHHhcchhhHhCChhhC
Confidence 99999999965 99999988632 2235778999999999999988877654
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=4.5e-25 Score=230.16 Aligned_cols=124 Identities=23% Similarity=0.425 Sum_probs=87.8
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhccc
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIA 1081 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~is 1081 (1133)
|+++||+++|+ +..+|+||||+|++||.+||+||||||||||+++|.|+++|++|+|++||.|+.+.+.. |++||
T Consensus 1 Iev~nv~k~yg---~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig 75 (232)
T d2awna2 1 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVG 75 (232)
T ss_dssp EEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGG--GTCEE
T ss_pred CEEEEEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchh--hceee
Confidence 79999999995 34699999999999999999999999999999999999999999999999999987754 68899
Q ss_pred ccccccccccc-cHHHHhccCCC-----CCCCHHHHHHHHHHcchHHHHhhcccc
Q 041277 1082 LVSQEPTLFAG-TIRENIAYGAS-----DEIDESEIVEAAKAANAHDFIAGLNEG 1130 (1133)
Q Consensus 1082 iV~Qdp~LF~g-TIreNI~~g~~-----~~~sdeei~~Al~~a~l~dfI~~LP~G 1130 (1133)
+|||+|.||.. |++||+.++.. .+..++.+.++++..++.++..+.|..
T Consensus 76 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~ 130 (232)
T d2awna2 76 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKA 130 (232)
T ss_dssp EECSSCCC---------------------CHHHHHHHHHHHHC------------
T ss_pred eeccccccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCChhh
Confidence 99999999965 99999998742 111245688999999999988776653
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.90 E-value=1.4e-24 Score=227.18 Aligned_cols=126 Identities=22% Similarity=0.400 Sum_probs=104.0
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcc
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHI 1080 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~i 1080 (1133)
.|+++||+++|+ +..+|+||||+|++||.+||+||||||||||+++|.|+++|++|+|++||.|+.+++.. |++|
T Consensus 6 ~I~v~nlsk~yg---~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~i 80 (239)
T d1v43a3 6 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 80 (239)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred eEEEEEEEEEEC---CEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcc--cceE
Confidence 599999999995 45699999999999999999999999999999999999999999999999999988865 6789
Q ss_pred ccccccccccc-ccHHHHhccCCC-CCCCH----HHHHHHHHHcchHHHHhhccccc
Q 041277 1081 ALVSQEPTLFA-GTIRENIAYGAS-DEIDE----SEIVEAAKAANAHDFIAGLNEGY 1131 (1133)
Q Consensus 1081 siV~Qdp~LF~-gTIreNI~~g~~-~~~sd----eei~~Al~~a~l~dfI~~LP~G~ 1131 (1133)
|+|||+|.||. -|++||+.++.. ...+. +.+.++++..++.++..+.|..|
T Consensus 81 g~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 137 (239)
T d1v43a3 81 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQL 137 (239)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTC
T ss_pred EEEeechhhcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhcCChhhC
Confidence 99999999995 699999998742 12343 45667899999999877777544
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=6.5e-25 Score=230.13 Aligned_cols=130 Identities=22% Similarity=0.358 Sum_probs=111.3
Q ss_pred EEEEeEEEECCCCCC-CccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhH---Hh
Q 041277 1002 IELQNVHFAYPARPD-VMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRS---LR 1077 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~-~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~---LR 1077 (1133)
|+++||+++|+.+.. ..||+||||+|++||.+||+||||||||||+++|.|+.+|++|+|.+||.|+.+.+.++ +|
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhhh
Confidence 799999999975432 25899999999999999999999999999999999999999999999999999988665 56
Q ss_pred hcccccccccccccc-cHHHHhccC-----CCCCCCHHHHHHHHHHcchHHHHhhccccc
Q 041277 1078 RHIALVSQEPTLFAG-TIRENIAYG-----ASDEIDESEIVEAAKAANAHDFIAGLNEGY 1131 (1133)
Q Consensus 1078 ~~isiV~Qdp~LF~g-TIreNI~~g-----~~~~~sdeei~~Al~~a~l~dfI~~LP~G~ 1131 (1133)
++||+|||+|.||.. |++|||.++ .+.+.-++.+.++++.+++.++..+.|..+
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~L 141 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNL 141 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCC
T ss_pred ccccccccccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhC
Confidence 889999999999975 999999874 222222467889999999998877777543
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.90 E-value=3.6e-25 Score=231.69 Aligned_cols=130 Identities=27% Similarity=0.420 Sum_probs=112.1
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCC---hhHHh
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYH---LRSLR 1077 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~---l~~LR 1077 (1133)
.|+++||+++|+.+ +..+|+||||+|++||.+||+|||||||||++++|.|+++|++|+|++||.|+...+ ...+|
T Consensus 3 ~i~v~nlsk~y~~g-~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~r 81 (242)
T d1oxxk2 3 RIIVKNVSKVFKKG-KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (242)
T ss_dssp CEEEEEEEEEEGGG-TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEeEEEEECCC-CEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhh
Confidence 59999999999643 456899999999999999999999999999999999999999999999999998766 45568
Q ss_pred hcccccccccccccc-cHHHHhccCCC-CCCC----HHHHHHHHHHcchHHHHhhccccc
Q 041277 1078 RHIALVSQEPTLFAG-TIRENIAYGAS-DEID----ESEIVEAAKAANAHDFIAGLNEGY 1131 (1133)
Q Consensus 1078 ~~isiV~Qdp~LF~g-TIreNI~~g~~-~~~s----deei~~Al~~a~l~dfI~~LP~G~ 1131 (1133)
++||+|||+|.||.. |++|||.++.. ...+ ++.+.++++.+++.++..+.|..+
T Consensus 82 r~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~L 141 (242)
T d1oxxk2 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPREL 141 (242)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGS
T ss_pred ccceEEeccccccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCChhhC
Confidence 899999999999975 99999998632 1233 345889999999999888877644
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.89 E-value=1.1e-24 Score=227.07 Aligned_cols=128 Identities=27% Similarity=0.401 Sum_probs=104.6
Q ss_pred EEEEeEEEECCCCCC-CccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHH----
Q 041277 1002 IELQNVHFAYPARPD-VMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSL---- 1076 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~-~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~L---- 1076 (1133)
|+++||+++|+.+.. ..+|+||||+|++||.+||+||||||||||+++|.|+++|++|+|++||.|+.+++.+++
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchhh
Confidence 799999999974322 247999999999999999999999999999999999999999999999999999998775
Q ss_pred hhcccccccccccccc-cHHHHhccCCC----CCCCH----HHHHHHHHHcchHH-HHhhccc
Q 041277 1077 RRHIALVSQEPTLFAG-TIRENIAYGAS----DEIDE----SEIVEAAKAANAHD-FIAGLNE 1129 (1133)
Q Consensus 1077 R~~isiV~Qdp~LF~g-TIreNI~~g~~----~~~sd----eei~~Al~~a~l~d-fI~~LP~ 1129 (1133)
|++||+|||+|.||.. |++||+.++.. ...+. +++.+.++.+++.+ +..+.|.
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~ 144 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPN 144 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGG
T ss_pred cceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChh
Confidence 4679999999999855 99999987421 12232 34666777888755 3444454
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.89 E-value=1.1e-24 Score=236.26 Aligned_cols=115 Identities=26% Similarity=0.410 Sum_probs=102.7
Q ss_pred cccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhh
Q 041277 999 TGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRR 1078 (1133)
Q Consensus 999 ~g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~ 1078 (1133)
.+.|+|+|++|.| .|||+||||+|++||++|||||||||||||+++|+|+|+|++|+|.+||
T Consensus 36 ~~~i~~~~~~~~g-----~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g------------- 97 (281)
T d1r0wa_ 36 ENNVSFSHLCLVG-----NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG------------- 97 (281)
T ss_dssp ----CHHHHHHTT-----CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------
T ss_pred CCcEEEEEcCCCC-----CeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC-------------
Confidence 3578888877644 3599999999999999999999999999999999999999999999998
Q ss_pred cccccccccccccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccccCC
Q 041277 1079 HIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133 (1133)
Q Consensus 1079 ~isiV~Qdp~LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G~dT 1133 (1133)
+|+||||+|.||++||+|||.+|. ..++.+++++++.+++++++.++|+|++|
T Consensus 98 ~i~~v~Q~~~l~~~tv~eni~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~~~~~ 150 (281)
T d1r0wa_ 98 RVSFCSQFSWIMPGTIKENIIFGV--SYDEYRYKSVVKACQLQQDITKFAEQDNT 150 (281)
T ss_dssp CEEEECSSCCCCSEEHHHHHTTTS--CCCHHHHHHHHHHTTCHHHHTTSTTGGGC
T ss_pred EEEEEeccccccCceeeccccccc--cccchHHHHHHHHHHhHHHHHhchhhhhh
Confidence 499999999999999999999985 36788999999999999999999999875
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=99.89 E-value=1.4e-24 Score=227.59 Aligned_cols=128 Identities=23% Similarity=0.390 Sum_probs=109.4
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhH----H
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRS----L 1076 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~----L 1076 (1133)
.|+++||+++|+ +..+|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+.+... .
T Consensus 3 ~i~v~nl~k~yg---~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~ 79 (240)
T d1g2912 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (240)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred cEEEEeEEEEEC---CEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccc
Confidence 489999999995 346999999999999999999999999999999999999999999999999998776554 3
Q ss_pred hhcccccccccccccc-cHHHHhccCCC-CCCC----HHHHHHHHHHcchHHHHhhccccc
Q 041277 1077 RRHIALVSQEPTLFAG-TIRENIAYGAS-DEID----ESEIVEAAKAANAHDFIAGLNEGY 1131 (1133)
Q Consensus 1077 R~~isiV~Qdp~LF~g-TIreNI~~g~~-~~~s----deei~~Al~~a~l~dfI~~LP~G~ 1131 (1133)
|++||+|||+|.||.. |++||+.++.. ...+ ++.+.++++.+++.++..+.|..|
T Consensus 80 ~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~L 140 (240)
T d1g2912 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPREL 140 (240)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGS
T ss_pred cccceecccchhhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhC
Confidence 7889999999999975 99999988621 1123 345888999999998877777543
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=99.86 E-value=7.1e-23 Score=218.39 Aligned_cols=127 Identities=21% Similarity=0.336 Sum_probs=106.4
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCCh-------
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHL------- 1073 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l------- 1073 (1133)
.|+++||+++|+ +..||+||||+|++||.+||+||||||||||+++|.|+++|++|+|++||.|+...+.
T Consensus 2 ~Lev~nl~k~yg---~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 78 (258)
T d1b0ua_ 2 KLHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 78 (258)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEEEEEEEEC---CEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhccc
Confidence 489999999995 3469999999999999999999999999999999999999999999999999976543
Q ss_pred ------hHHhhccccccccccccc-ccHHHHhccCC--CCCCC----HHHHHHHHHHcchHHHH-hhcccc
Q 041277 1074 ------RSLRRHIALVSQEPTLFA-GTIRENIAYGA--SDEID----ESEIVEAAKAANAHDFI-AGLNEG 1130 (1133)
Q Consensus 1074 ------~~LR~~isiV~Qdp~LF~-gTIreNI~~g~--~~~~s----deei~~Al~~a~l~dfI-~~LP~G 1130 (1133)
..+|++||+|||+|.||. -|++||+.++. ....+ ++.+.++++.+++.+.. .+.|..
T Consensus 79 ~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~ 149 (258)
T d1b0ua_ 79 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVH 149 (258)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGG
T ss_pred ccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCccc
Confidence 458899999999999997 49999998752 11122 45678888999997755 445653
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=99.85 E-value=2.1e-22 Score=212.34 Aligned_cols=127 Identities=20% Similarity=0.316 Sum_probs=106.1
Q ss_pred ccEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhc
Q 041277 1000 GNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRH 1079 (1133)
Q Consensus 1000 g~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~ 1079 (1133)
|.|+++|++.+|++ .+||+||||+|++||.+|||||+|||||||+++|.|++.|++|+|.++|.|+.+ ..+.+|++
T Consensus 1 gaI~v~nl~k~yg~---~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~-~~~~~~~~ 76 (238)
T d1vpla_ 1 GAVVVKDLRKRIGK---KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKL 76 (238)
T ss_dssp CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTT
T ss_pred CCEEEEeEEEEECC---EEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEeccc-ChHHHHhh
Confidence 67999999999963 459999999999999999999999999999999999999999999999999987 45788999
Q ss_pred ccccccccccccc-cHHHHhccCCC-CCCCH----HHHHHHHHHcchHHHHhhcccc
Q 041277 1080 IALVSQEPTLFAG-TIRENIAYGAS-DEIDE----SEIVEAAKAANAHDFIAGLNEG 1130 (1133)
Q Consensus 1080 isiV~Qdp~LF~g-TIreNI~~g~~-~~~sd----eei~~Al~~a~l~dfI~~LP~G 1130 (1133)
+++|||++.+|.. |++||+.+... ...+. +.+.++++..++.++..+.|..
T Consensus 77 i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 133 (238)
T d1vpla_ 77 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVST 133 (238)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGG
T ss_pred EeEeeeccccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhhhhhh
Confidence 9999999998875 99999976421 01223 3466677778887776555443
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=99.85 E-value=3.6e-22 Score=211.01 Aligned_cols=125 Identities=25% Similarity=0.432 Sum_probs=101.1
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhh-c
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRR-H 1079 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~-~ 1079 (1133)
-++++||+++|+ +..||+||||+|++||.+||+||+|||||||+++|+|+++|++|+|++||.|+.+.+.+..++ .
T Consensus 6 ~Lev~~l~k~yg---~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~g 82 (240)
T d1ji0a_ 6 VLEVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred EEEEeeEEEEEC---CEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhc
Confidence 489999999995 345999999999999999999999999999999999999999999999999999998877644 4
Q ss_pred ccccccccccccc-cHHHHhccCCCCCCC----HHHHHHHHHHc-chHHHHhhcc
Q 041277 1080 IALVSQEPTLFAG-TIRENIAYGASDEID----ESEIVEAAKAA-NAHDFIAGLN 1128 (1133)
Q Consensus 1080 isiV~Qdp~LF~g-TIreNI~~g~~~~~s----deei~~Al~~a-~l~dfI~~LP 1128 (1133)
|+++||++.||.. |++||+.++...... .+++.++++.. ++.++..+.|
T Consensus 83 i~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 137 (240)
T d1ji0a_ 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLG 137 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBS
T ss_pred ccccCcccccCCcccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhChHHHHhCch
Confidence 8999999999986 999999876421111 23344444443 4555544443
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.85 E-value=4.2e-22 Score=212.86 Aligned_cols=97 Identities=29% Similarity=0.463 Sum_probs=90.4
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhc-c
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRH-I 1080 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~-i 1080 (1133)
++++||+.+|+ +..||+||||+|++||.+||+||+|||||||+++|.|+++|++|+|++||.|+...+..++++. |
T Consensus 5 L~v~nlsk~yg---~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi 81 (254)
T d1g6ha_ 5 LRTENIVKYFG---EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 81 (254)
T ss_dssp EEEEEEEEEET---TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred EEEEEEEEEEC---CeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhcC
Confidence 89999999995 3459999999999999999999999999999999999999999999999999999999987664 9
Q ss_pred ccccccccccc-ccHHHHhccC
Q 041277 1081 ALVSQEPTLFA-GTIRENIAYG 1101 (1133)
Q Consensus 1081 siV~Qdp~LF~-gTIreNI~~g 1101 (1133)
++|||+|.+|. -|++|||.+|
T Consensus 82 ~~v~Q~~~~~~~ltv~enl~~~ 103 (254)
T d1g6ha_ 82 VRTFQTPQPLKEMTVLENLLIG 103 (254)
T ss_dssp EECCCCCGGGGGSBHHHHHHGG
T ss_pred CccCCccccCCCCeeeeeeeeh
Confidence 99999999885 5999999876
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.82 E-value=4.6e-21 Score=197.48 Aligned_cols=113 Identities=21% Similarity=0.446 Sum_probs=98.4
Q ss_pred cEEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcc
Q 041277 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHI 1080 (1133)
Q Consensus 1001 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~i 1080 (1133)
.||++||+|+|+ .+||+||||+|++||.+||+||+|||||||+++|+|+++|++|+|.+||.|+. .+|.++
T Consensus 2 ~lev~~ls~~y~----~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~-----~~~~~i 72 (200)
T d1sgwa_ 2 KLEIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKI 72 (200)
T ss_dssp EEEEEEEEEESS----SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGE
T ss_pred eEEEEEEEEEeC----CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehh-----HhcCcE
Confidence 489999999993 25999999999999999999999999999999999999999999999999985 468899
Q ss_pred cccccccccccc-cHHHHhccCC---CCCCCHHHHHHHHHHcchHH
Q 041277 1081 ALVSQEPTLFAG-TIRENIAYGA---SDEIDESEIVEAAKAANAHD 1122 (1133)
Q Consensus 1081 siV~Qdp~LF~g-TIreNI~~g~---~~~~sdeei~~Al~~a~l~d 1122 (1133)
+++||++.++.. |++||+.+.. ....+++|+.++++..++.+
T Consensus 73 ~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 118 (200)
T d1sgwa_ 73 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD 118 (200)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC
T ss_pred EEEeecccCCCCcCHHHHHHHHHHhcCCccCHHHHHHHHHHcCCcc
Confidence 999999998865 8999986421 12457889999999887644
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.80 E-value=3.1e-20 Score=193.36 Aligned_cols=120 Identities=23% Similarity=0.419 Sum_probs=99.8
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhccc
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIA 1081 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~is 1081 (1133)
++. ++.-+|.+ . .+ ||||+++ ||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+++.. |++||
T Consensus 3 l~v-~~~k~~g~---~-~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig 73 (240)
T d2onka1 3 LKV-RAEKRLGN---F-RL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIG 73 (240)
T ss_dssp EEE-EEEEEETT---E-EE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCB
T ss_pred EEE-EEEEEECC---E-EE-EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHH--HcCce
Confidence 344 45566632 1 23 8999995 789999999999999999999999999999999999999988865 78999
Q ss_pred ccccccccccc-cHHHHhccCCCCCCC----HHHHHHHHHHcchHHHHhhccccc
Q 041277 1082 LVSQEPTLFAG-TIRENIAYGASDEID----ESEIVEAAKAANAHDFIAGLNEGY 1131 (1133)
Q Consensus 1082 iV~Qdp~LF~g-TIreNI~~g~~~~~s----deei~~Al~~a~l~dfI~~LP~G~ 1131 (1133)
+|||+|.||.. ||+|||.|+.. ..+ ++.+.++++.+++.++..+.|..|
T Consensus 74 ~v~Q~~~l~~~ltV~enl~~~l~-~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~L 127 (240)
T d2onka1 74 FVPQDYALFPHLSVYRNIAYGLR-NVERVERDRRVREMAEKLGIAHLLDRKPARL 127 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCT-TSCHHHHHHHHHHHHHTTTCTTTTTCCGGGS
T ss_pred eeccchhhcccchhhHhhhhhhc-ccCHHHHHHHHHHHHHhcCcHhhhhCChhhC
Confidence 99999999964 99999999743 233 356888999999999888877654
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=5.4e-19 Score=185.96 Aligned_cols=121 Identities=23% Similarity=0.320 Sum_probs=107.2
Q ss_pred EEEEeEEEECCCCCCCccccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhccc
Q 041277 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIA 1081 (1133)
Q Consensus 1002 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~is 1081 (1133)
++++||+++| +|+||||+|++||.+||+||||||||||+++|.|++ |++|+|.++|.|+...+.+.++.+.+
T Consensus 4 l~~~dv~~~~-------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~ 75 (231)
T d1l7vc_ 4 MQLQDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRA 75 (231)
T ss_dssp EEEEEECCTT-------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEE
T ss_pred EEEECcccCc-------eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHHHHHhhce
Confidence 7899998766 589999999999999999999999999999999987 58999999999999999999999999
Q ss_pred ccccccc-cccccHHHHhccCCCCCCCHHHHHHHHHHcchHHHHhhcccc
Q 041277 1082 LVSQEPT-LFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEG 1130 (1133)
Q Consensus 1082 iV~Qdp~-LF~gTIreNI~~g~~~~~sdeei~~Al~~a~l~dfI~~LP~G 1130 (1133)
+++|+.. .|..|+.+|+.++..+....+.+.++++..++.+++.+.|..
T Consensus 76 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 125 (231)
T d1l7vc_ 76 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQ 125 (231)
T ss_dssp EECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTTTTTSBGGG
T ss_pred eeeccccCCccccHHHHhhhccchhhHHHHHHHHHHhcCCHhHhCcChhh
Confidence 9999987 578899999988766555566788999999998887665543
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.65 E-value=4.2e-18 Score=173.23 Aligned_cols=159 Identities=9% Similarity=0.037 Sum_probs=104.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCCCCCHHHHH
Q 041277 391 TVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVI 470 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~ 470 (1133)
+++|+||||||||||++.|+|+++|+.|.+.+++.+................++.+.++..+..++...++.....+
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 78 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQ--- 78 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHH---
T ss_pred EEEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHHHHhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhcCcc---
Confidence 58999999999999999999999999999999887654322111111111122222222223222222221111110
Q ss_pred HHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHh--CC
Q 041277 471 EAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEALDKAV--VG 548 (1133)
Q Consensus 471 ~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~ 548 (1133)
...+|+|+++|.++++++.++|+++++|||....+ ....+.+.+.+.. .+
T Consensus 79 --------------------------~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~--~~~~~~~~l~~~l~~~~ 130 (178)
T d1ye8a1 79 --------------------------YFEELAIPILERAYREAKKDRRKVIIIDEIGKMEL--FSKKFRDLVRQIMHDPN 130 (178)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGG--GCHHHHHHHHHHHTCTT
T ss_pred --------------------------hhhhhhhhhHHHHHHHHHhcCCCceeecCCCccch--hhHHHHHHHHHHhccCC
Confidence 01478999999999999999999999999854432 2234444554433 36
Q ss_pred CeEEEEecCcchhhcCCEEEEEeCCeEEeecC
Q 041277 549 RTTIIIAHRLSTIRNADVIAVVQDGQVMETGS 580 (1133)
Q Consensus 549 ~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~ 580 (1133)
.|+|+++|+.+....+|++..+++|++++-+.
T Consensus 131 ~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 131 VNVVATIPIRDVHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp SEEEEECCSSCCSHHHHHHHTCTTCEEEECCT
T ss_pred CEEEEEEccHHHHHhhceEEEEeCCEEEEECC
Confidence 89999999988777799999999999987653
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.21 E-value=4.4e-11 Score=138.05 Aligned_cols=73 Identities=22% Similarity=0.308 Sum_probs=62.3
Q ss_pred CCCChHHHHHHHHHHHH----hhCCCEEEEeCcccCCChHHHHHHHHHHHHHhC-CCeEEEEecCcchhhcCCEEEEE
Q 041277 498 VQMSGGQKQRIAIARAI----IKAPRILLLDEATSALDSESERVVQEALDKAVV-GRTTIIIAHRLSTIRNADVIAVV 570 (1133)
Q Consensus 498 ~~LSgGqkqri~iARal----~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~~d~i~~l 570 (1133)
..||||||.++++|-.+ ..++|+++||||+++||+.....+.+.|++... +.-+|++||++..+..||+++.+
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHhcccEEEE
Confidence 45799999998877543 457889999999999999999999999987753 45699999999999999998765
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.12 E-value=2e-10 Score=126.32 Aligned_cols=76 Identities=26% Similarity=0.387 Sum_probs=66.3
Q ss_pred CCCChHHHHHHHHHHHH----hhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCEEEE--Ee
Q 041277 498 VQMSGGQKQRIAIARAI----IKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAV--VQ 571 (1133)
Q Consensus 498 ~~LSgGqkqri~iARal----~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~--l~ 571 (1133)
..+|+|||+...++..+ ..+|+++++|||-++|||...+.+.+.|++..++.-+|++||++..+..+|+++. ++
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~~ 297 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMV 297 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEES
T ss_pred hhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHhcccEEEEEEe
Confidence 46899999998887754 3467899999999999999999999999988888889999999999999999966 55
Q ss_pred CC
Q 041277 572 DG 573 (1133)
Q Consensus 572 ~G 573 (1133)
+|
T Consensus 298 ~g 299 (308)
T d1e69a_ 298 NG 299 (308)
T ss_dssp SS
T ss_pred CC
Confidence 65
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=98.48 E-value=1.2e-08 Score=101.97 Aligned_cols=71 Identities=14% Similarity=0.105 Sum_probs=57.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcccccccccccccccHHHHhccCC
Q 041277 1032 STALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGA 1102 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~ 1102 (1133)
||+|+||+|||||||++.++++++|+.|.+.++|.+....+.........+.++.+.++..+..++.+.++
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGS 72 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETT
T ss_pred EEEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHHHHhhhhhhhhhhHHHHHHhhhhhhhhhhhhh
Confidence 69999999999999999999999999999999999887777666666777888888998888877766553
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=97.11 E-value=0.00012 Score=79.02 Aligned_cols=89 Identities=22% Similarity=0.271 Sum_probs=55.1
Q ss_pred eeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcccccccccccccccHHHHhccCCCC--
Q 041277 1027 IEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASD-- 1104 (1133)
Q Consensus 1027 I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~-- 1104 (1133)
++.|..+.|+|+|||||||+++.|+++.+|..=-|.| .|..++.+..-++.+.+-.+..+=+..=++.-++.. |+
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti--Ed~~El~l~~~~~~~~~~~~~~~~~~~ll~~~lR~~-pd~i 239 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI--EDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMR-PDRI 239 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE--ESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSC-CSEE
T ss_pred HHhCCCEEEEeeccccchHHHHHHhhhcccccceeec--cchhhhhcccccccceeccccchhHHHHHHHHhccC-CCcc
Confidence 4556779999999999999999999999987656666 455666554333333333332221111234444543 42
Q ss_pred ---CCCHHHHHHHHHHc
Q 041277 1105 ---EIDESEIVEAAKAA 1118 (1133)
Q Consensus 1105 ---~~sdeei~~Al~~a 1118 (1133)
+..+.|.+++++.+
T Consensus 240 ivgEiR~~ea~~~l~a~ 256 (323)
T d1g6oa_ 240 ILGELRSSEAYDFYNVL 256 (323)
T ss_dssp EESCCCSTHHHHHHHHH
T ss_pred cCCccCchhHHHHHHHH
Confidence 44455667766654
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.07 E-value=6e-06 Score=81.84 Aligned_cols=34 Identities=26% Similarity=0.189 Sum_probs=28.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccCCCccEEEECC
Q 041277 391 TVALVGGSGSGKSTVIALLQRFYAPLGGEIILDG 424 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g 424 (1133)
.+.|+||+|+|||||++.+.+.+....+.+.+.+
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~ 36 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFY 36 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 5889999999999999999999987766665443
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.01 E-value=0.00012 Score=73.80 Aligned_cols=77 Identities=19% Similarity=0.301 Sum_probs=57.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhhhcC--------------CCCCeEEECCcccCCCChhHHhhcccccccccccccccH
Q 041277 1029 AGKSTALVGQSGSGKSTIIGLIERFYD--------------PLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTI 1094 (1133)
Q Consensus 1029 ~Ge~vaIVG~SGSGKSTL~~LL~R~yd--------------p~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTI 1094 (1133)
.|..+.|+||||||||||.+.|..-++ |..|+ +||+|-.=++.+...+.+. ++-++..+++
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~R~~E--~~G~dY~Fvs~~~F~~~i~---~g~flE~~~~ 75 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGE--VHGEHYFFVNHDEFKEMIS---RDAFLEHAEV 75 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHHH---TTCEEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhCCccCceEEEEEeccCCCccc--cccccceeecHHHHHHHhh---hhhheeEEEE
Confidence 488999999999999999988876543 22344 5899999999999888765 7777777777
Q ss_pred HHHhccCCCCCCCHHHHHHHH
Q 041277 1095 RENIAYGASDEIDESEIVEAA 1115 (1133)
Q Consensus 1095 reNI~~g~~~~~sdeei~~Al 1115 (1133)
..| .||- +-+++.+++
T Consensus 76 ~g~-~YGt----~~~~v~~~~ 91 (205)
T d1s96a_ 76 FGN-YYGT----SREAIEQVL 91 (205)
T ss_dssp TTE-EEEE----EHHHHHHHH
T ss_pred CCc-eecc----ccchHHHHH
Confidence 777 4663 234455444
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.01 E-value=0.002 Score=65.19 Aligned_cols=47 Identities=17% Similarity=0.188 Sum_probs=33.6
Q ss_pred hCCCEEEEeCcccCCChHHHHHHHHHH-HHHh-CCCeEEEEecCcchhh
Q 041277 516 KAPRILLLDEATSALDSESERVVQEAL-DKAV-VGRTTIIIAHRLSTIR 562 (1133)
Q Consensus 516 ~~~~illlDE~ts~lD~~~~~~i~~~l-~~~~-~~~t~i~itH~~~~~~ 562 (1133)
.+..++|+||...+=|+.....+-.++ +.+. .+.+++++||..+...
T Consensus 113 ~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 113 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 161 (224)
T ss_dssp CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred CCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechhhhh
Confidence 355699999999999998655444443 3333 4778999999876544
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.98 E-value=0.00017 Score=70.33 Aligned_cols=35 Identities=31% Similarity=0.417 Sum_probs=28.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECC
Q 041277 1029 AGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDD 1065 (1133)
Q Consensus 1029 ~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG 1065 (1133)
.|+.|.|+|++||||||++++|.+-+... -+.+||
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg~~--~~~~~~ 37 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPGVP--KVHFHS 37 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSSC--EEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCC--EEEecH
Confidence 58899999999999999999998765321 355665
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.98 E-value=0.00014 Score=71.73 Aligned_cols=65 Identities=25% Similarity=0.273 Sum_probs=42.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeE----------EECCcccCCCChhHHhhcccccccccccccccHHHH
Q 041277 1030 GKSTALVGQSGSGKSTIIGLIERFYDPLKGDV----------KIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIREN 1097 (1133)
Q Consensus 1030 Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I----------~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreN 1097 (1133)
|..+.|+||||||||||++.|..-++.-...+ ..||+|-.-++.+...+.+. ++-++-.+....|
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~tTR~~r~~e~~G~dy~fvs~~~f~~~~~---~~~f~e~~~~~~~ 76 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLID---QGELLEWAEIHGG 76 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHH---TTCEEEEEEEGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCCCCeEEEEeeccCCCccccCCcceeeccchhhhhhhc---ccccchhhhcccC
Confidence 88999999999999999999977664221111 35788877777777665532 4444433333333
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.93 E-value=0.0025 Score=65.00 Aligned_cols=45 Identities=11% Similarity=0.113 Sum_probs=31.0
Q ss_pred hCCCEEEEeCcccCCChHHHHHHHH-HHHHHh-C-CCeEEEEecCcch
Q 041277 516 KAPRILLLDEATSALDSESERVVQE-ALDKAV-V-GRTTIIIAHRLST 560 (1133)
Q Consensus 516 ~~~~illlDE~ts~lD~~~~~~i~~-~l~~~~-~-~~t~i~itH~~~~ 560 (1133)
.+..++|+||+.++=|+.....+.. .++.+. + +..++++||..+.
T Consensus 119 ~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l 166 (234)
T d1wb9a2 119 TEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFEL 166 (234)
T ss_dssp CTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGG
T ss_pred ccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHH
Confidence 3456999999999999987655544 454453 3 4567777776554
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.85 E-value=0.00019 Score=70.88 Aligned_cols=27 Identities=41% Similarity=0.529 Sum_probs=24.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhccCC
Q 041277 389 GKTVALVGGSGSGKSTVIALLQRFYAP 415 (1133)
Q Consensus 389 g~~~~ivG~sGsGKSTll~~l~~~~~~ 415 (1133)
|++++|+||||||||||++.|...++.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~ 28 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPN 28 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCCC
Confidence 899999999999999999999887653
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.84 E-value=0.0033 Score=65.95 Aligned_cols=34 Identities=29% Similarity=0.372 Sum_probs=27.8
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHh
Q 041277 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQR 411 (1133)
Q Consensus 378 ~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~ 411 (1133)
-|+++.-=+.+|+++.|.|++|+||||++.-++-
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred hHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 4565554479999999999999999999877764
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.68 E-value=0.0004 Score=69.91 Aligned_cols=34 Identities=26% Similarity=0.319 Sum_probs=26.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEE
Q 041277 388 AGKTVALVGGSGSGKSTVIALLQRFYAPLGGEII 421 (1133)
Q Consensus 388 ~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~ 421 (1133)
+|++++++|+||+|||||+|.|.+-.....|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhhccCcc
Confidence 6999999999999999999999987777777765
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.63 E-value=0.0053 Score=62.82 Aligned_cols=33 Identities=12% Similarity=0.301 Sum_probs=26.9
Q ss_pred ccceeEE--eeCCCEEEEEcCCCCcHHHHHHHHHhc
Q 041277 379 FKDFCLT--IPAGKTVALVGGSGSGKSTVIALLQRF 412 (1133)
Q Consensus 379 l~~i~l~--i~~g~~~~ivG~sGsGKSTll~~l~~~ 412 (1133)
|+.+ +. +++|+.+.|.||+||||||++.-++--
T Consensus 15 LD~~-l~GGi~~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 15 LDEM-CGGGFFKDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp HHHH-TTSSEESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred HHHh-hcCCCcCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 4444 33 789999999999999999998777654
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.58 E-value=0.00054 Score=68.94 Aligned_cols=25 Identities=36% Similarity=0.567 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhhh
Q 041277 1029 AGKSTALVGQSGSGKSTIIGLIERF 1053 (1133)
Q Consensus 1029 ~Ge~vaIVG~SGSGKSTL~~LL~R~ 1053 (1133)
+|++++++|+||.|||||++.|.+=
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~ 118 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPG 118 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTT
T ss_pred cCCeEEEECCCCCCHHHHHHhhcch
Confidence 5899999999999999999999753
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.55 E-value=0.00039 Score=67.19 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=22.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcCCC
Q 041277 1032 STALVGQSGSGKSTIIGLIERFYDPL 1057 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~ydp~ 1057 (1133)
.++|+|++|||||||++-|.+-+...
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~ 29 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCAR 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHC
Confidence 58999999999999999998776544
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.53 E-value=0.00041 Score=67.05 Aligned_cols=26 Identities=27% Similarity=0.324 Sum_probs=22.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccCCC
Q 041277 391 TVALVGGSGSGKSTVIALLQRFYAPL 416 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~~~~~ 416 (1133)
+++|+|++|||||||++-|.+.+...
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~ 29 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCAR 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHC
Confidence 68999999999999999999866543
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.49 E-value=0.00055 Score=66.67 Aligned_cols=27 Identities=26% Similarity=0.297 Sum_probs=24.4
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhhhc
Q 041277 1028 EAGKSTALVGQSGSGKSTIIGLIERFY 1054 (1133)
Q Consensus 1028 ~~Ge~vaIVG~SGSGKSTL~~LL~R~y 1054 (1133)
++|-.|.|+|.+||||||+.+.|.+-+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999999665
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.48 E-value=0.0029 Score=59.57 Aligned_cols=32 Identities=28% Similarity=0.254 Sum_probs=24.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECC
Q 041277 390 KTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDG 424 (1133)
Q Consensus 390 ~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g 424 (1133)
+++.|+|++||||||+.+.|.... .|...++.
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~---~~~~~~~~ 34 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKN---PGFYNINR 34 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS---TTEEEECH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC---CCCEEech
Confidence 478899999999999999876532 25555543
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.39 E-value=0.00017 Score=70.78 Aligned_cols=62 Identities=16% Similarity=0.072 Sum_probs=43.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhccccccccccccccc
Q 041277 1032 STALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGT 1093 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gT 1093 (1133)
.|.|+||+|+|||||++.+.+.+....+.+.+.+.+........+.....-+.|+...+...
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRV 64 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECCEEETTSSEEEEEEEETTSCEEEEEEC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccccccccccccccccccchhhhhhhh
Confidence 47899999999999999999999877777776666554444444444455555655444333
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.38 E-value=0.0009 Score=67.04 Aligned_cols=27 Identities=30% Similarity=0.400 Sum_probs=24.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhccC
Q 041277 388 AGKTVALVGGSGSGKSTVIALLQRFYA 414 (1133)
Q Consensus 388 ~g~~~~ivG~sGsGKSTll~~l~~~~~ 414 (1133)
+|.++.|+||||||||||.+.|...++
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 589999999999999999999877654
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.31 E-value=0.00085 Score=65.09 Aligned_cols=26 Identities=38% Similarity=0.563 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhcc
Q 041277 388 AGKTVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 388 ~g~~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
.|+++.|+||+||||||+.+.|...+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999998765
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.24 E-value=0.0011 Score=65.41 Aligned_cols=47 Identities=28% Similarity=0.482 Sum_probs=35.3
Q ss_pred EEEEcCCCCCHHHHHHHHhhhcC-------------CCCCeEEECCcccCCCChhHHhhccc
Q 041277 1033 TALVGQSGSGKSTIIGLIERFYD-------------PLKGDVKIDDRDIRSYHLRSLRRHIA 1081 (1133)
Q Consensus 1033 vaIVG~SGSGKSTL~~LL~R~yd-------------p~~G~I~IdG~dI~~i~l~~LR~~is 1081 (1133)
|.|+|||||||+||++.|..-++ |..|++ ||+|-.-++.+...+.+.
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E~--~g~dy~fvs~~~f~~~~~ 63 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSMIK 63 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCEEECSCCCTTCC--BTTTEEECCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhCCcceeEEEeeccCCCCCCCc--CCccceeccHHHHHHHHh
Confidence 78999999999999998865432 235544 888888888887765543
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.24 E-value=0.00041 Score=70.05 Aligned_cols=34 Identities=29% Similarity=0.365 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEE
Q 041277 388 AGKTVALVGGSGSGKSTVIALLQRFYAPLGGEII 421 (1133)
Q Consensus 388 ~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~ 421 (1133)
+|++++++|+||+|||||+|.|.+-.....|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhhhcccc
Confidence 5889999999999999999999998777777775
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=96.22 E-value=0.0074 Score=60.01 Aligned_cols=27 Identities=37% Similarity=0.548 Sum_probs=17.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhccC
Q 041277 388 AGKTVALVGGSGSGKSTVIALLQRFYA 414 (1133)
Q Consensus 388 ~g~~~~ivG~sGsGKSTll~~l~~~~~ 414 (1133)
...++++|||+|+||||.+-=|+..+.
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~ 37 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYK 37 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345789999999999987766665553
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.19 E-value=0.003 Score=66.12 Aligned_cols=30 Identities=33% Similarity=0.465 Sum_probs=24.3
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHh
Q 041277 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQR 411 (1133)
Q Consensus 378 ~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~ 411 (1133)
++.++ .||+++.|.|++|+|||||+--|+-
T Consensus 22 li~G~----~pg~~~~i~G~~G~GKS~l~l~la~ 51 (274)
T d1nlfa_ 22 VLPNM----VAGTVGALVSPGGAGKSMLALQLAA 51 (274)
T ss_dssp EETTE----ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred HhCCc----cCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 45553 4699999999999999999876653
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.08 E-value=0.0013 Score=63.97 Aligned_cols=27 Identities=33% Similarity=0.349 Sum_probs=24.3
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHHhcc
Q 041277 387 PAGKTVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 387 ~~g~~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
++|-++.|+|++||||||+.+.|+.-+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999998655
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.07 E-value=0.0012 Score=63.61 Aligned_cols=27 Identities=22% Similarity=0.148 Sum_probs=23.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhccCCC
Q 041277 390 KTVALVGGSGSGKSTVIALLQRFYAPL 416 (1133)
Q Consensus 390 ~~~~ivG~sGsGKSTll~~l~~~~~~~ 416 (1133)
++++|+|++|||||||++-|.+.+...
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~ 28 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVRE 28 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 468999999999999999988877644
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=96.06 E-value=0.015 Score=59.76 Aligned_cols=27 Identities=26% Similarity=0.324 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhccC
Q 041277 388 AGKTVALVGGSGSGKSTVIALLQRFYA 414 (1133)
Q Consensus 388 ~g~~~~ivG~sGsGKSTll~~l~~~~~ 414 (1133)
+..-+.+.||+|||||++++.|+..+.
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEeeCCCCCCccHHHHHHHHHcC
Confidence 345578999999999999999998774
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.05 E-value=0.0016 Score=62.99 Aligned_cols=28 Identities=25% Similarity=0.493 Sum_probs=24.8
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhhhcC
Q 041277 1028 EAGKSTALVGQSGSGKSTIIGLIERFYD 1055 (1133)
Q Consensus 1028 ~~Ge~vaIVG~SGSGKSTL~~LL~R~yd 1055 (1133)
|+|-.|+|.|++||||||+.+.|..-+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence 5688999999999999999999977654
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.03 E-value=0.0012 Score=65.29 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=21.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcCC
Q 041277 1032 STALVGQSGSGKSTIIGLIERFYDP 1056 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~ydp 1056 (1133)
.|||.|++||||||+++.|...+..
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~~ 48 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLRE 48 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc
Confidence 5899999999999999999876553
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=96.02 E-value=0.0022 Score=67.86 Aligned_cols=68 Identities=16% Similarity=0.290 Sum_probs=41.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcccccccccccccccHHHH----hccCCCCCCC
Q 041277 1032 STALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIREN----IAYGASDEID 1107 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreN----I~~g~~~~~s 1107 (1133)
.|||.|+|||||||+.+.|..+..-..+ ..++.+|++|.++.+...++. -.+|.|+.++
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~-----------------~~~v~~Is~D~F~~~~~~l~~~~~~~~~g~Pes~D 144 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPE-----------------HRRVELITTDGFLHPNQVLKERGLMKKKGFPESYD 144 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTT-----------------CCCEEEEEGGGGBCCHHHHHHHTCTTCTTSGGGBC
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHhhhcC-----------------CCceEEEeeeeeECCchHHHHhcCCccCCchHhhh
Confidence 4699999999999999999887641111 023556666666665444322 1345565566
Q ss_pred HHHHHHHHH
Q 041277 1108 ESEIVEAAK 1116 (1133)
Q Consensus 1108 deei~~Al~ 1116 (1133)
-+.+.+.++
T Consensus 145 ~~~L~~~L~ 153 (308)
T d1sq5a_ 145 MHRLVKFVS 153 (308)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555443
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.02 E-value=0.0014 Score=63.13 Aligned_cols=37 Identities=24% Similarity=0.173 Sum_probs=26.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHhhhcCCCC---CeEEECCcc
Q 041277 1031 KSTALVGQSGSGKSTIIGLIERFYDPLK---GDVKIDDRD 1067 (1133)
Q Consensus 1031 e~vaIVG~SGSGKSTL~~LL~R~ydp~~---G~I~IdG~d 1067 (1133)
..++|+|++|||||||+.-|.+.+.... |.|.-|+.+
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~~~ 41 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHG 41 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEEeccCc
Confidence 3579999999999999988887766543 444445543
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.02 E-value=0.0012 Score=64.54 Aligned_cols=25 Identities=28% Similarity=0.612 Sum_probs=22.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHhhhcC
Q 041277 1031 KSTALVGQSGSGKSTIIGLIERFYD 1055 (1133)
Q Consensus 1031 e~vaIVG~SGSGKSTL~~LL~R~yd 1055 (1133)
.+|+|+|++|||||||++.|..-|.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999998763
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.99 E-value=0.011 Score=61.30 Aligned_cols=28 Identities=21% Similarity=0.341 Sum_probs=24.2
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHHhcc
Q 041277 386 IPAGKTVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 386 i~~g~~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
+++..-+.+.||+|+|||++++.+++.+
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcchhHHHHHHHHh
Confidence 4455568899999999999999999876
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.99 E-value=0.012 Score=56.75 Aligned_cols=25 Identities=40% Similarity=0.430 Sum_probs=21.6
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHHh
Q 041277 387 PAGKTVALVGGSGSGKSTVIALLQR 411 (1133)
Q Consensus 387 ~~g~~~~ivG~sGsGKSTll~~l~~ 411 (1133)
++-+++.++|++||||||+.+-++.
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999987754
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.97 E-value=0.0017 Score=63.79 Aligned_cols=42 Identities=33% Similarity=0.427 Sum_probs=30.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc------------CCCCCeEEECCcccCCCCh
Q 041277 1032 STALVGQSGSGKSTIIGLIERFY------------DPLKGDVKIDDRDIRSYHL 1073 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~y------------dp~~G~I~IdG~dI~~i~l 1073 (1133)
+|||+|++|+|||||++.|++-- ++..|.+.++|.++..++.
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~d~ 63 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDT 63 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCceeeeecc
Confidence 69999999999999999998632 2234667788776554443
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=95.96 E-value=0.0015 Score=63.05 Aligned_cols=27 Identities=33% Similarity=0.362 Sum_probs=24.2
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHHhcc
Q 041277 387 PAGKTVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 387 ~~g~~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
+.+.++.|+||+||||||+.+.|...+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998765
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.95 E-value=0.0019 Score=62.34 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhhhcC
Q 041277 1030 GKSTALVGQSGSGKSTIIGLIERFYD 1055 (1133)
Q Consensus 1030 Ge~vaIVG~SGSGKSTL~~LL~R~yd 1055 (1133)
.+.|.|.|++||||||+++.|.+.+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46789999999999999999999875
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.91 E-value=0.0019 Score=63.14 Aligned_cols=31 Identities=19% Similarity=0.132 Sum_probs=25.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHhhhcCCCCCeE
Q 041277 1031 KSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061 (1133)
Q Consensus 1031 e~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I 1061 (1133)
..|+|.|++||||||+++.|...+.....++
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~ 32 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNY 32 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCCe
Confidence 5799999999999999999988776554443
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.87 E-value=0.00073 Score=68.19 Aligned_cols=33 Identities=30% Similarity=0.466 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeE
Q 041277 1029 AGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061 (1133)
Q Consensus 1029 ~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I 1061 (1133)
+|++++++|+||.|||||+|.|.+=....-|+|
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~v 128 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEI 128 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC---------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhhhccc
Confidence 588999999999999999999987554333433
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.87 E-value=0.0022 Score=61.94 Aligned_cols=26 Identities=35% Similarity=0.563 Sum_probs=23.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhccC
Q 041277 389 GKTVALVGGSGSGKSTVIALLQRFYA 414 (1133)
Q Consensus 389 g~~~~ivG~sGsGKSTll~~l~~~~~ 414 (1133)
.+++.|.|++||||||+.+.|...+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 56899999999999999999999874
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=95.86 E-value=0.0018 Score=62.44 Aligned_cols=28 Identities=29% Similarity=0.375 Sum_probs=24.6
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhhhcC
Q 041277 1028 EAGKSTALVGQSGSGKSTIIGLIERFYD 1055 (1133)
Q Consensus 1028 ~~Ge~vaIVG~SGSGKSTL~~LL~R~yd 1055 (1133)
+.+..+.|+|++||||||+++.|.+-+.
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l~ 31 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQLH 31 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4678899999999999999999988663
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.85 E-value=0.0028 Score=67.91 Aligned_cols=38 Identities=37% Similarity=0.566 Sum_probs=32.0
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEEC
Q 041277 386 IPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILD 423 (1133)
Q Consensus 386 i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~ 423 (1133)
++.|.-+.|+||+||||||+++.|+++.+|..=-|.+.
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivtiE 200 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIE 200 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEE
T ss_pred HHhCCCEEEEeeccccchHHHHHHhhhcccccceeecc
Confidence 44566789999999999999999999998877666663
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=95.84 E-value=0.0022 Score=61.90 Aligned_cols=28 Identities=21% Similarity=0.538 Sum_probs=24.6
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHHhccC
Q 041277 387 PAGKTVALVGGSGSGKSTVIALLQRFYA 414 (1133)
Q Consensus 387 ~~g~~~~ivG~sGsGKSTll~~l~~~~~ 414 (1133)
++|-.++|.||+||||||+.+.|..-+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence 4678899999999999999999987653
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.82 E-value=0.0019 Score=60.92 Aligned_cols=34 Identities=32% Similarity=0.270 Sum_probs=24.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcc
Q 041277 1031 KSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRD 1067 (1133)
Q Consensus 1031 e~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~d 1067 (1133)
+.|.|+|++||||||+++.|.+-. .|...++.-|
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~---~~~~~~~~d~ 36 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKN---PGFYNINRDD 36 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS---TTEEEECHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC---CCCEEechHH
Confidence 457899999999999999876532 2555555433
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=95.81 E-value=0.002 Score=62.03 Aligned_cols=35 Identities=29% Similarity=0.323 Sum_probs=27.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCccc
Q 041277 1031 KSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDI 1068 (1133)
Q Consensus 1031 e~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI 1068 (1133)
..+.|+|++||||||+++.|.+-++ +...++|-++
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~d~~ 37 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD---NSAYIEGDII 37 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS---SEEEEEHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC---CCEEEehHHH
Confidence 3588999999999999999998875 4555555443
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.81 E-value=0.0017 Score=64.36 Aligned_cols=22 Identities=36% Similarity=0.453 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 041277 1032 STALVGQSGSGKSTIIGLIERF 1053 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~ 1053 (1133)
+|||||++|+|||||++.|.+.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHhcCC
Confidence 5999999999999999999863
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=95.80 E-value=0.00024 Score=71.05 Aligned_cols=34 Identities=29% Similarity=0.403 Sum_probs=29.2
Q ss_pred ccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHhcc
Q 041277 379 FKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 379 l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
+++.++++.+| +++|+|||||||||++.+|.-.+
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred EeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHHh
Confidence 57778888776 99999999999999999997543
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=95.79 E-value=0.0017 Score=62.51 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcC
Q 041277 1032 STALVGQSGSGKSTIIGLIERFYD 1055 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~yd 1055 (1133)
+|.|+|++||||||+++.|..-|.
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l~ 29 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKSG 29 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 578999999999999999976653
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.76 E-value=0.0012 Score=65.28 Aligned_cols=27 Identities=33% Similarity=0.487 Sum_probs=24.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhhhcC
Q 041277 1029 AGKSTALVGQSGSGKSTIIGLIERFYD 1055 (1133)
Q Consensus 1029 ~Ge~vaIVG~SGSGKSTL~~LL~R~yd 1055 (1133)
.|-.|-|+|++||||||+++.|.+.+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 577999999999999999999988654
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=95.72 E-value=0.002 Score=62.88 Aligned_cols=24 Identities=46% Similarity=0.764 Sum_probs=22.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 041277 390 KTVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 390 ~~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
+.++|+||+|||||||++.|+..+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999876
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.72 E-value=0.0022 Score=62.56 Aligned_cols=29 Identities=28% Similarity=0.311 Sum_probs=24.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhccCCCc
Q 041277 389 GKTVALVGGSGSGKSTVIALLQRFYAPLG 417 (1133)
Q Consensus 389 g~~~~ivG~sGsGKSTll~~l~~~~~~~~ 417 (1133)
+++++|.|++||||||+++.|...+....
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~~ 29 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEG 29 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 36899999999999999999987765443
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=95.70 E-value=0.0022 Score=61.61 Aligned_cols=32 Identities=28% Similarity=0.385 Sum_probs=25.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECC
Q 041277 390 KTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDG 424 (1133)
Q Consensus 390 ~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g 424 (1133)
..+.|+||+||||||+.+.|+..+. +.+.++|
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~ 34 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD---NSAYIEG 34 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS---SEEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC---CCEEEeh
Confidence 4689999999999999999998764 3444444
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=95.65 E-value=0.0022 Score=60.93 Aligned_cols=24 Identities=38% Similarity=0.465 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcC
Q 041277 1032 STALVGQSGSGKSTIIGLIERFYD 1055 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~yd 1055 (1133)
.|.|+|++||||||+.++|..-+.
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999987653
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.58 E-value=0.0023 Score=62.53 Aligned_cols=21 Identities=33% Similarity=0.457 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 041277 1032 STALVGQSGSGKSTIIGLIER 1052 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R 1052 (1133)
+|+|||++|+|||||++.|.+
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~ 22 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTG 22 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999986
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.52 E-value=0.0087 Score=61.47 Aligned_cols=44 Identities=18% Similarity=0.375 Sum_probs=32.3
Q ss_pred CCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchh
Q 041277 517 APRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTI 561 (1133)
Q Consensus 517 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~ 561 (1133)
+.+++++||+=. |.......+.+.+.+...+..+|++|++.+-+
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~i 174 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPI 174 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSS
T ss_pred CceEEEeccccc-cccccchhhhcccccccccccceeeeccccch
Confidence 567999999854 67777777777776655556678899988644
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=95.52 E-value=0.0032 Score=62.02 Aligned_cols=27 Identities=26% Similarity=0.478 Sum_probs=24.9
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhhhc
Q 041277 1028 EAGKSTALVGQSGSGKSTIIGLIERFY 1054 (1133)
Q Consensus 1028 ~~Ge~vaIVG~SGSGKSTL~~LL~R~y 1054 (1133)
|+|=++.|+||.||||||+.+.|..-|
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHHHh
Confidence 678899999999999999999999766
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.51 E-value=0.0027 Score=62.65 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccC
Q 041277 391 TVALVGGSGSGKSTVIALLQRFYA 414 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~~~ 414 (1133)
++||.||+|||||||.+.|...+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999986654
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.49 E-value=0.003 Score=63.46 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 041277 1032 STALVGQSGSGKSTIIGLIERFY 1054 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~y 1054 (1133)
.|||.|+|||||||+.+.|...+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l 26 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLL 26 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999886654
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.43 E-value=0.0038 Score=60.77 Aligned_cols=25 Identities=28% Similarity=0.394 Sum_probs=21.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcc
Q 041277 389 GKTVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 389 g~~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
...+.|+||||+|||||++.|+..+
T Consensus 3 ~k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 3 RKTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhC
Confidence 3578999999999999999988654
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.43 E-value=0.0039 Score=60.73 Aligned_cols=48 Identities=19% Similarity=0.272 Sum_probs=32.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHhhhcC-------------CCCCeEEECCcccCCCChhHHhhcc
Q 041277 1031 KSTALVGQSGSGKSTIIGLIERFYD-------------PLKGDVKIDDRDIRSYHLRSLRRHI 1080 (1133)
Q Consensus 1031 e~vaIVG~SGSGKSTL~~LL~R~yd-------------p~~G~I~IdG~dI~~i~l~~LR~~i 1080 (1133)
..+.|||||||||+||++.|.+-++ |..|+ +||+|-.=++.+..++.+
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~v~~TTR~~R~~E--~~G~dY~Fvs~~~F~~~~ 64 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDE--ENGKNYYFVSHDQMMQDI 64 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---C--CBTTTBEECCHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCCcCeeeccccccCCCCCcc--ccCccceeeehhhhhhhe
Confidence 4689999999999999998875432 12343 578876556766666543
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.40 E-value=0.0019 Score=63.64 Aligned_cols=26 Identities=46% Similarity=0.594 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhcc
Q 041277 388 AGKTVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 388 ~g~~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
+|.++.|+|++||||||+.+.|+..+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57799999999999999999998765
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.37 E-value=0.0027 Score=63.59 Aligned_cols=43 Identities=30% Similarity=0.327 Sum_probs=33.1
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhhhc-CC-CCCeEEECCcccCC
Q 041277 1028 EAGKSTALVGQSGSGKSTIIGLIERFY-DP-LKGDVKIDDRDIRS 1070 (1133)
Q Consensus 1028 ~~Ge~vaIVG~SGSGKSTL~~LL~R~y-dp-~~G~I~IdG~dI~~ 1070 (1133)
++|..|-|.|.||||||||++.|.+-. +. ..-.+.+||-++++
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR~ 66 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRF 66 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHHH
Confidence 678899999999999999999887533 21 12367899877754
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.37 E-value=0.0035 Score=60.46 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 041277 1032 STALVGQSGSGKSTIIGLIERFY 1054 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~y 1054 (1133)
+|+|+|++|+|||||++.|.+-.
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999998643
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=95.34 E-value=0.0037 Score=59.34 Aligned_cols=23 Identities=39% Similarity=0.488 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 041277 391 TVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
.+.|+||+||||||+.+.|+..+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998765
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.31 E-value=0.0036 Score=59.60 Aligned_cols=24 Identities=21% Similarity=0.490 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhhh
Q 041277 1030 GKSTALVGQSGSGKSTIIGLIERF 1053 (1133)
Q Consensus 1030 Ge~vaIVG~SGSGKSTL~~LL~R~ 1053 (1133)
|=+|++||++|+|||||++.|.+-
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999753
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.30 E-value=0.0025 Score=62.48 Aligned_cols=21 Identities=33% Similarity=0.597 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 041277 1032 STALVGQSGSGKSTIIGLIER 1052 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R 1052 (1133)
.|||||++++|||||++.|.|
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~ 23 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSS 23 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEE
T ss_pred eEEEECCCCCCHHHHHHHHhC
Confidence 489999999999999999976
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=95.30 E-value=0.0036 Score=60.13 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 041277 391 TVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
.++|+||+||||||+.+.|+.-+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47799999999999999998655
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.26 E-value=0.0057 Score=59.70 Aligned_cols=22 Identities=36% Similarity=0.478 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 041277 391 TVALVGGSGSGKSTVIALLQRF 412 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~ 412 (1133)
.+||+|++|+|||||++.|+|-
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 6899999999999999999874
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.24 E-value=0.0041 Score=60.43 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 041277 1032 STALVGQSGSGKSTIIGLIERF 1053 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~ 1053 (1133)
+|+|||++|+|||||++.|.+-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999874
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=95.20 E-value=0.062 Score=54.75 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 041277 391 TVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
-+.+.||+|+|||++++.|++.+
T Consensus 44 giLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEecCCCCChhHHHHHHHHHc
Confidence 37899999999999999999865
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=95.16 E-value=0.0041 Score=61.40 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=22.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHhhhc
Q 041277 1031 KSTALVGQSGSGKSTIIGLIERFY 1054 (1133)
Q Consensus 1031 e~vaIVG~SGSGKSTL~~LL~R~y 1054 (1133)
..|.|+||+||||||+++.|..-|
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 578999999999999999998876
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.14 E-value=0.0045 Score=60.71 Aligned_cols=22 Identities=41% Similarity=0.631 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHhcc
Q 041277 392 VALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 392 ~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
++|+||||||||||++.|+..+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999997654
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.14 E-value=0.0042 Score=61.18 Aligned_cols=44 Identities=30% Similarity=0.409 Sum_probs=30.3
Q ss_pred EEEEcCCCCCHHHHHHHHhhhcC-------------CCCCeEEECCcccCCCChhHHhh
Q 041277 1033 TALVGQSGSGKSTIIGLIERFYD-------------PLKGDVKIDDRDIRSYHLRSLRR 1078 (1133)
Q Consensus 1033 vaIVG~SGSGKSTL~~LL~R~yd-------------p~~G~I~IdG~dI~~i~l~~LR~ 1078 (1133)
|.|+||||||||||++.|..-++ |..|+ .||+|-.-++.+...+
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E--~~g~dy~fvs~~~f~~ 59 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQR 59 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCceeEEEEEeccCCCCCC--ccCceeEEeehhHHHH
Confidence 67999999999999998865432 22353 3666665566555533
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=95.11 E-value=0.0051 Score=60.42 Aligned_cols=27 Identities=33% Similarity=0.594 Sum_probs=24.4
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHHhcc
Q 041277 387 PAGKTVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 387 ~~g~~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
|+|-.++|+||+||||||+.+.|+.-|
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHHHh
Confidence 578899999999999999999999765
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.10 E-value=0.0031 Score=61.50 Aligned_cols=20 Identities=35% Similarity=0.670 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhh
Q 041277 1033 TALVGQSGSGKSTIIGLIER 1052 (1133)
Q Consensus 1033 vaIVG~SGSGKSTL~~LL~R 1052 (1133)
|||||++|+|||||++.|.+
T Consensus 4 VaivG~~nvGKSTLin~L~~ 23 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTR 23 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCS
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 89999999999999999975
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.10 E-value=0.0047 Score=59.85 Aligned_cols=21 Identities=33% Similarity=0.485 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 041277 1032 STALVGQSGSGKSTIIGLIER 1052 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R 1052 (1133)
+|+|+|.+|+|||||++.|.|
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~ 27 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLG 27 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 489999999999999999986
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=95.07 E-value=0.0045 Score=61.09 Aligned_cols=25 Identities=40% Similarity=0.566 Sum_probs=22.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcc
Q 041277 389 GKTVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 389 g~~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
..+++|+||+||||||+.+.|+.-|
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3588999999999999999999766
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.06 E-value=0.0045 Score=61.15 Aligned_cols=22 Identities=41% Similarity=0.472 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 041277 391 TVALVGGSGSGKSTVIALLQRF 412 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~ 412 (1133)
.++|+|++|+|||||++.|.|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHhcCC
Confidence 5999999999999999999974
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.03 E-value=0.0046 Score=64.12 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 041277 1032 STALVGQSGSGKSTIIGLIERF 1053 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~ 1053 (1133)
+|+|+|+||+||||++|.|+|-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~ 55 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGE 55 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5899999999999999999974
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.02 E-value=0.0031 Score=61.50 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=20.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHhhhc
Q 041277 1031 KSTALVGQSGSGKSTIIGLIERFY 1054 (1133)
Q Consensus 1031 e~vaIVG~SGSGKSTL~~LL~R~y 1054 (1133)
=+|+|||++++|||||++.|.+-.
T Consensus 17 ~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 17 IEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 469999999999999999998753
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.96 E-value=0.0051 Score=60.76 Aligned_cols=31 Identities=23% Similarity=0.293 Sum_probs=25.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEEC
Q 041277 1030 GKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKID 1064 (1133)
Q Consensus 1030 Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~Id 1064 (1133)
-..+.|+||+||||||++++|..-| |-+.|+
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~----g~~~is 38 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY----SFVHLS 38 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS----SCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh----CCeEEe
Confidence 3469999999999999999999988 445554
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=94.94 E-value=0.0057 Score=58.26 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 041277 1032 STALVGQSGSGKSTIIGLIER 1052 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R 1052 (1133)
+|+|||++|+|||||++.+.+
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~ 27 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQV 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 599999999999999998754
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=94.92 E-value=0.0058 Score=57.68 Aligned_cols=21 Identities=29% Similarity=0.439 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 041277 1032 STALVGQSGSGKSTIIGLIER 1052 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R 1052 (1133)
||.|||++|+|||||++-|.+
T Consensus 2 kivlvG~~~vGKSsLi~~l~~ 22 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKL 22 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999998864
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.91 E-value=0.0054 Score=61.14 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=21.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcC
Q 041277 1032 STALVGQSGSGKSTIIGLIERFYD 1055 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~yd 1055 (1133)
.|.+||.+||||||+++.|.+.+.
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998775
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.88 E-value=0.0077 Score=63.55 Aligned_cols=45 Identities=20% Similarity=0.349 Sum_probs=33.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCCCCcccc
Q 041277 391 TVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATS 452 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~t 452 (1133)
++||.|++||||||+.+.|..++.-..+. .++..+++|.+..+..
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~~-----------------~~v~~Is~D~F~~~~~ 126 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPEH-----------------RRVELITTDGFLHPNQ 126 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTTC-----------------CCEEEEEGGGGBCCHH
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHhhhcCC-----------------CceEEEeeeeeECCch
Confidence 78999999999999999998876422110 1477788887766543
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=94.84 E-value=0.064 Score=52.86 Aligned_cols=26 Identities=35% Similarity=0.516 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhccC
Q 041277 389 GKTVALVGGSGSGKSTVIALLQRFYA 414 (1133)
Q Consensus 389 g~~~~ivG~sGsGKSTll~~l~~~~~ 414 (1133)
-.++++|||+|+||||.+-=|+..+.
T Consensus 9 p~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 9 PFVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35789999999999987766676554
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.83 E-value=0.0046 Score=60.01 Aligned_cols=24 Identities=17% Similarity=0.383 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhhh
Q 041277 1030 GKSTALVGQSGSGKSTIIGLIERF 1053 (1133)
Q Consensus 1030 Ge~vaIVG~SGSGKSTL~~LL~R~ 1053 (1133)
.-||+|||++|+|||||++.|.+=
T Consensus 13 ~~kI~lvG~~~vGKTsLl~~l~~~ 36 (186)
T d1f6ba_ 13 TGKLVFLGLDNAGKTTLLHMLKDD 36 (186)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 348999999999999999998763
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=94.81 E-value=0.08 Score=52.14 Aligned_cols=26 Identities=42% Similarity=0.508 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhccC
Q 041277 389 GKTVALVGGSGSGKSTVIALLQRFYA 414 (1133)
Q Consensus 389 g~~~~ivG~sGsGKSTll~~l~~~~~ 414 (1133)
..++.++||+|+||||.+.-|+..+.
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45789999999999988877776553
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.80 E-value=0.006 Score=60.05 Aligned_cols=22 Identities=45% Similarity=0.528 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHhcc
Q 041277 392 VALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 392 ~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
++|+||||||||||.+.|+..+
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6799999999999999987654
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.79 E-value=0.0064 Score=60.90 Aligned_cols=23 Identities=35% Similarity=0.601 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 041277 391 TVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
++||.|++||||||+.+.|...+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l 26 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLL 26 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999987665
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.78 E-value=0.0036 Score=62.63 Aligned_cols=41 Identities=37% Similarity=0.329 Sum_probs=30.3
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHHhccCCCc--cEEEECCeec
Q 041277 387 PAGKTVALVGGSGSGKSTVIALLQRFYAPLG--GEIILDGVSI 427 (1133)
Q Consensus 387 ~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~--G~i~~~g~~~ 427 (1133)
++|.++-+.|.|||||||+.+.|...+.... -.+.+||.++
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~i 64 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 64 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHH
Confidence 5788999999999999999999875442211 3466776443
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=94.77 E-value=0.0061 Score=58.18 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 041277 1032 STALVGQSGSGKSTIIGLIERFY 1054 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~y 1054 (1133)
.|.|+|++||||||+.++|..-+
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999996655
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.77 E-value=0.0065 Score=60.47 Aligned_cols=21 Identities=29% Similarity=0.583 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 041277 1032 STALVGQSGSGKSTIIGLIER 1052 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R 1052 (1133)
+|+|||++|+|||||++.|.+
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~ 25 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTT 25 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 789999999999999999975
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=94.76 E-value=0.0062 Score=58.64 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=20.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHhhhc
Q 041277 1031 KSTALVGQSGSGKSTIIGLIERFY 1054 (1133)
Q Consensus 1031 e~vaIVG~SGSGKSTL~~LL~R~y 1054 (1133)
+.|-|+|++||||||+.++|..-+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999997654
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.69 E-value=0.0064 Score=59.96 Aligned_cols=34 Identities=35% Similarity=0.531 Sum_probs=28.1
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEEC
Q 041277 386 IPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILD 423 (1133)
Q Consensus 386 i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~ 423 (1133)
++++.++.|+||+||||||+.+.|+.-| |-..++
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~----g~~~is 38 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY----GYTHLS 38 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT----CCEEEE
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHh----CCeeEe
Confidence 4577899999999999999999999866 445443
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.68 E-value=0.0072 Score=58.13 Aligned_cols=22 Identities=41% Similarity=0.502 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 041277 391 TVALVGGSGSGKSTVIALLQRF 412 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~ 412 (1133)
+++|+|++|+|||||++.|+|.
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999874
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.67 E-value=0.0026 Score=60.60 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 041277 1032 STALVGQSGSGKSTIIGLIERF 1053 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~ 1053 (1133)
+|||+|++|+|||||++.|.+-
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999863
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.67 E-value=0.0056 Score=60.47 Aligned_cols=31 Identities=29% Similarity=0.441 Sum_probs=25.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhccCCCccEEEEC
Q 041277 389 GKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILD 423 (1133)
Q Consensus 389 g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~ 423 (1133)
-.++.|+||+||||||+.+.|+.-| |-+.|+
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~----g~~~is 38 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY----SFVHLS 38 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS----SCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh----CCeEEe
Confidence 4479999999999999999999877 545554
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.64 E-value=0.0075 Score=56.97 Aligned_cols=21 Identities=19% Similarity=0.532 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 041277 1032 STALVGQSGSGKSTIIGLIER 1052 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R 1052 (1133)
|++|||++|+|||||++.|.+
T Consensus 2 KI~liG~~nvGKSSLln~l~~ 22 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKN 22 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 789999999999999999886
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.64 E-value=0.013 Score=56.30 Aligned_cols=35 Identities=26% Similarity=0.385 Sum_probs=26.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhh-----hcCCCCC-----eEEECCc
Q 041277 1032 STALVGQSGSGKSTIIGLIER-----FYDPLKG-----DVKIDDR 1066 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R-----~ydp~~G-----~I~IdG~ 1066 (1133)
||++||.+|+|||||++-+.+ -|+|+-| .+.+||.
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~~~~~~~~ 48 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKS 48 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCccCcceeeccccceeeccc
Confidence 689999999999999986654 4667655 3455653
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=94.60 E-value=0.12 Score=52.81 Aligned_cols=42 Identities=24% Similarity=0.334 Sum_probs=32.2
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCcc-EEEECCee
Q 041277 385 TIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGG-EIILDGVS 426 (1133)
Q Consensus 385 ~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G-~i~~~g~~ 426 (1133)
=+++|.++-|.||+|||||||+--++....-..| -+++|...
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~ 92 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 92 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEcccc
Confidence 5789999999999999999998777765543334 46777654
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.57 E-value=0.02 Score=59.14 Aligned_cols=75 Identities=15% Similarity=0.210 Sum_probs=53.5
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCe-EEECCcccCCCChhHHhhcccccccccccccccHHHHhccCCCC
Q 041277 1026 KIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGD-VKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASD 1104 (1133)
Q Consensus 1026 ~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~-I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~ 1104 (1133)
=++.|..+-|.|++||||||++.-+..-+.-..|. |+||... .++.+.+++ +|+ |+ ||+.+-.|
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~--~~~~e~a~~-~Gv---D~--------d~il~~~~- 120 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH--ALDPDYAKK-LGV---DT--------DSLLVSQP- 120 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC--CCCHHHHHH-HTC---CG--------GGCEEECC-
T ss_pred CcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCc--cCCHHHHHH-hCC---CH--------HHeEEecC-
Confidence 57899999999999999999987777776655565 7788765 356666544 565 21 56666655
Q ss_pred CCCHHHHHHHHH
Q 041277 1105 EIDESEIVEAAK 1116 (1133)
Q Consensus 1105 ~~sdeei~~Al~ 1116 (1133)
.+-||+.+.++
T Consensus 121 -~~~E~~~~~~~ 131 (269)
T d1mo6a1 121 -DTGEQALEIAD 131 (269)
T ss_dssp -SSHHHHHHHHH
T ss_pred -CCHHHHHHHHH
Confidence 35667766654
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=94.57 E-value=0.01 Score=60.55 Aligned_cols=24 Identities=38% Similarity=0.656 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccC
Q 041277 391 TVALVGGSGSGKSTVIALLQRFYA 414 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~~~ 414 (1133)
+++|+|+.|||||||++.|++...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Confidence 589999999999999999987553
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.56 E-value=0.007 Score=58.86 Aligned_cols=22 Identities=41% Similarity=0.451 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 041277 391 TVALVGGSGSGKSTVIALLQRF 412 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~ 412 (1133)
.++|||++|+|||||++.|.|.
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999874
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=94.50 E-value=0.0008 Score=67.01 Aligned_cols=33 Identities=27% Similarity=0.366 Sum_probs=27.3
Q ss_pred ccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhh
Q 041277 1020 FEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERF 1053 (1133)
Q Consensus 1020 L~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ 1053 (1133)
+++.++...+| .+.|+|++|||||||+.+|.-.
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~ 47 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTA 47 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHH
T ss_pred EeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 46677777776 7889999999999999999744
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.40 E-value=0.013 Score=55.85 Aligned_cols=37 Identities=22% Similarity=0.456 Sum_probs=27.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHhh-----hcCCCCCe-----EEECCcc
Q 041277 1031 KSTALVGQSGSGKSTIIGLIER-----FYDPLKGD-----VKIDDRD 1067 (1133)
Q Consensus 1031 e~vaIVG~SGSGKSTL~~LL~R-----~ydp~~G~-----I~IdG~d 1067 (1133)
-||+|||++|+|||||++.+.. -|+|+-|. +.+||.+
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~ 51 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQE 51 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEE
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccceEEecCcEE
Confidence 3799999999999999988753 34455443 4677754
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=94.36 E-value=0.0089 Score=58.65 Aligned_cols=22 Identities=36% Similarity=0.653 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 041277 1032 STALVGQSGSGKSTIIGLIERF 1053 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~ 1053 (1133)
.|||+|++||||||+++.|..+
T Consensus 5 IIgitG~~gSGKstva~~l~~~ 26 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRSW 26 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 5899999999999999999764
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=94.32 E-value=0.0099 Score=57.56 Aligned_cols=22 Identities=41% Similarity=0.492 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 041277 391 TVALVGGSGSGKSTVIALLQRF 412 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~ 412 (1133)
+++|+|++|+|||||++.|+|.
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999974
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=94.29 E-value=0.0095 Score=61.62 Aligned_cols=85 Identities=24% Similarity=0.279 Sum_probs=56.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcC--CCCCeEEECCcccCCCChhHHhhcccccccccccccccHHHHhccCCCC--CCC
Q 041277 1032 STALVGQSGSGKSTIIGLIERFYD--PLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASD--EID 1107 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~yd--p~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~--~~s 1107 (1133)
.|||+|+.|||||||+..|+..-- ...|++. +|..+.+...++-.+++++-..-..+--..-+-|+- +.|+ +..
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~-~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~i-DtPGh~dF~ 81 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVE-EGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLL-DAPGYGDFV 81 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG-GTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEE-ECCCSGGGH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCchhhccch-hccccccchHHHHHhCCeEEeecccccccccceeEE-ccCchhhhh
Confidence 479999999999999998864432 2346654 678888999999999999877644433233344542 3342 222
Q ss_pred HHHHHHHHHHcc
Q 041277 1108 ESEIVEAAKAAN 1119 (1133)
Q Consensus 1108 deei~~Al~~a~ 1119 (1133)
.|+..|++.+.
T Consensus 82 -~e~~~al~~~D 92 (267)
T d2dy1a2 82 -GEIRGALEAAD 92 (267)
T ss_dssp -HHHHHHHHHCS
T ss_pred -hhhhhhhcccC
Confidence 36667776654
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=94.29 E-value=0.0089 Score=57.48 Aligned_cols=24 Identities=33% Similarity=0.456 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 041277 390 KTVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 390 ~~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
+.+.++|++||||||+.+.|+..+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999998654
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=94.29 E-value=0.01 Score=55.83 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 041277 391 TVALVGGSGSGKSTVIALLQRF 412 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~ 412 (1133)
+++|+|++|||||||++.+.+-
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998763
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.27 E-value=0.0063 Score=59.39 Aligned_cols=21 Identities=38% Similarity=0.540 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhc
Q 041277 392 VALVGGSGSGKSTVIALLQRF 412 (1133)
Q Consensus 392 ~~ivG~sGsGKSTll~~l~~~ 412 (1133)
|||+|++++|||||++.|.|-
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999863
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.27 E-value=0.0077 Score=59.35 Aligned_cols=28 Identities=36% Similarity=0.446 Sum_probs=25.2
Q ss_pred eeCCCEEEEEcCCCCCHHHHHHHHhhhc
Q 041277 1027 IEAGKSTALVGQSGSGKSTIIGLIERFY 1054 (1133)
Q Consensus 1027 I~~Ge~vaIVG~SGSGKSTL~~LL~R~y 1054 (1133)
++.+..|-|+||.||||||+++.|..-|
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567889999999999999999999876
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=94.25 E-value=0.0099 Score=56.63 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHhcc
Q 041277 392 VALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 392 ~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
+.|+|++||||||+.+.|+..+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998765
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=94.24 E-value=0.0098 Score=56.36 Aligned_cols=62 Identities=10% Similarity=0.093 Sum_probs=35.4
Q ss_pred ChHHHHHHHHHHHHhhCCCEEEEe-CcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhh
Q 041277 501 SGGQKQRIAIARAIIKAPRILLLD-EATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIR 562 (1133)
Q Consensus 501 SgGqkqri~iARal~~~~~illlD-E~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~ 562 (1133)
...++..+..+...+.++++++++ ++...--....+...+.++....++.+|+|....+...
T Consensus 64 ~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~ 126 (161)
T d2gj8a1 64 DEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITG 126 (161)
T ss_dssp SHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHC
T ss_pred ccchhHHHHHHHHHHHhccccceeeccccccchhhhhhhhhhhhhcccccceeeccchhhhhh
Confidence 344556666677778889876654 33322222223333444555555677888877766543
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.21 E-value=0.01 Score=57.47 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 041277 1032 STALVGQSGSGKSTIIGLIERFY 1054 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~y 1054 (1133)
+|.|+|+.||||||++++|.--|
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999997766
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.20 E-value=0.009 Score=57.14 Aligned_cols=24 Identities=42% Similarity=0.508 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcC
Q 041277 1032 STALVGQSGSGKSTIIGLIERFYD 1055 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~yd 1055 (1133)
+|.|+|++||||||+.++|..-+.
T Consensus 3 ~IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHhC
Confidence 367899999999999999987664
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.16 E-value=0.011 Score=58.70 Aligned_cols=22 Identities=27% Similarity=0.543 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 041277 391 TVALVGGSGSGKSTVIALLQRF 412 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~ 412 (1133)
.++|+|++|||||||++.|.+-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999873
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.15 E-value=0.011 Score=58.22 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 041277 1032 STALVGQSGSGKSTIIGLIERFY 1054 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~y 1054 (1133)
+|.|+||.||||||+++.|..-|
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57999999999999999998766
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=94.11 E-value=0.011 Score=57.41 Aligned_cols=21 Identities=19% Similarity=0.439 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHHHHhhh
Q 041277 1033 TALVGQSGSGKSTIIGLIERF 1053 (1133)
Q Consensus 1033 vaIVG~SGSGKSTL~~LL~R~ 1053 (1133)
|||||++.||||||++.|.+.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEeCCCCcHHHHHHHHHHh
Confidence 899999999999999999864
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=94.10 E-value=0.011 Score=57.53 Aligned_cols=24 Identities=33% Similarity=0.475 Sum_probs=21.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcC
Q 041277 1032 STALVGQSGSGKSTIIGLIERFYD 1055 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~yd 1055 (1133)
+|.|+|+.||||||++++|..-|.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~g 25 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKYG 25 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 578999999999999999998773
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.10 E-value=0.014 Score=58.15 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=24.8
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHHhcc
Q 041277 386 IPAGKTVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 386 i~~g~~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
+++|+++.|.||+|||||||+.-++.-.
T Consensus 20 i~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 20 IETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CcCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999988777543
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=94.10 E-value=0.012 Score=55.87 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 041277 391 TVALVGGSGSGKSTVIALLQRF 412 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~ 412 (1133)
.++|||++|+|||||++.+.+-
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999998763
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=94.09 E-value=0.0089 Score=58.58 Aligned_cols=23 Identities=35% Similarity=0.481 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 041277 1032 STALVGQSGSGKSTIIGLIERFY 1054 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~y 1054 (1133)
+|.|.||+||||||+++.|..-|
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998877
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=94.09 E-value=0.015 Score=59.25 Aligned_cols=24 Identities=38% Similarity=0.732 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcC
Q 041277 1032 STALVGQSGSGKSTIIGLIERFYD 1055 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~yd 1055 (1133)
.|+|+|+.|||||||++.|.+...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Confidence 489999999999999999987653
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.07 E-value=0.012 Score=56.86 Aligned_cols=22 Identities=36% Similarity=0.462 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 041277 391 TVALVGGSGSGKSTVIALLQRF 412 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~ 412 (1133)
+|+|+|.+|+|||||++.|.|-
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999973
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=94.06 E-value=0.014 Score=57.66 Aligned_cols=27 Identities=48% Similarity=0.797 Sum_probs=22.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhccC
Q 041277 388 AGKTVALVGGSGSGKSTVIALLQRFYA 414 (1133)
Q Consensus 388 ~g~~~~ivG~sGsGKSTll~~l~~~~~ 414 (1133)
++.++++|||+|+||||.+-=|+..+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~ 31 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 31 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999987776776654
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.05 E-value=0.011 Score=57.20 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 041277 391 TVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
.+.|+||+||||||+.+.|+--|
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999998766
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.02 E-value=0.011 Score=65.39 Aligned_cols=23 Identities=35% Similarity=0.588 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 041277 1032 STALVGQSGSGKSTIIGLIERFY 1054 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~y 1054 (1133)
.|||+|+||+|||||+|.|.|..
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999754
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=94.01 E-value=0.019 Score=56.79 Aligned_cols=50 Identities=28% Similarity=0.381 Sum_probs=34.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCC-hhHHhh
Q 041277 1029 AGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYH-LRSLRR 1078 (1133)
Q Consensus 1029 ~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~-l~~LR~ 1078 (1133)
.+..+++|||+|+||||.+.=|.+.+.-..-+|.+=..|.-... .++|+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~ 55 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSE 55 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeccccccchhhHhh
Confidence 46789999999999999876667766644456666566654443 344443
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.00 E-value=0.013 Score=55.27 Aligned_cols=22 Identities=23% Similarity=0.461 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 041277 391 TVALVGGSGSGKSTVIALLQRF 412 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~ 412 (1133)
+++++|++|+|||||++.+.+-
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6789999999999999999874
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=94.00 E-value=0.01 Score=57.75 Aligned_cols=25 Identities=36% Similarity=0.452 Sum_probs=21.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhccC
Q 041277 390 KTVALVGGSGSGKSTVIALLQRFYA 414 (1133)
Q Consensus 390 ~~~~ivG~sGsGKSTll~~l~~~~~ 414 (1133)
+++.|.|++||||||+.+.|...+.
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3577899999999999999987764
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.99 E-value=0.012 Score=57.83 Aligned_cols=23 Identities=39% Similarity=0.616 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 041277 391 TVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
++.|+||+||||||..+.|+.-|
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57999999999999999998766
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.97 E-value=0.012 Score=58.50 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccC
Q 041277 391 TVALVGGSGSGKSTVIALLQRFYA 414 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~~~ 414 (1133)
+++++|.+||||||+.+.|++.+.
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999997653
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=93.96 E-value=0.019 Score=54.97 Aligned_cols=36 Identities=33% Similarity=0.553 Sum_probs=27.2
Q ss_pred EEEEEcCCCCCHHHHHHHHh-----hhcCCCCCe-----EEECCcc
Q 041277 1032 STALVGQSGSGKSTIIGLIE-----RFYDPLKGD-----VKIDDRD 1067 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~-----R~ydp~~G~-----I~IdG~d 1067 (1133)
||.+||.+|+|||||++-+. .-|+|+.|. +.+||.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~~~~~~~~~~ 51 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEE 51 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEE
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCcccCCcccccccccccccccc
Confidence 79999999999999998764 345666553 4467654
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=93.95 E-value=0.011 Score=57.65 Aligned_cols=24 Identities=29% Similarity=0.529 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcC
Q 041277 1032 STALVGQSGSGKSTIIGLIERFYD 1055 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~yd 1055 (1133)
.+.|.|++||||||+++.|...+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 456789999999999999988774
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=93.94 E-value=0.034 Score=57.22 Aligned_cols=74 Identities=15% Similarity=0.145 Sum_probs=49.0
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCC-eEEECCcccCCCChhHHhhcccccccccccccccHHHHhccCCCC
Q 041277 1026 KIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKG-DVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASD 1104 (1133)
Q Consensus 1026 ~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G-~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~ 1104 (1133)
=+++|..+-|.|++||||||++.-++.-..-..| -++||... .++.+. -+.+|+=+ ||+.+-+|
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~--~~~~~~-a~~~Gvd~-----------d~v~~~~~- 114 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH--ALDPIY-ARKLGVDI-----------DNLLCSQP- 114 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCHHH-HHHTTCCG-----------GGCEEECC-
T ss_pred CccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEcccc--ccCHHH-HHHhCCCH-----------HHEEEecC-
Confidence 5889999999999999999998666665543334 47888765 344443 34556532 56656544
Q ss_pred CCCHHHHHHHH
Q 041277 1105 EIDESEIVEAA 1115 (1133)
Q Consensus 1105 ~~sdeei~~Al 1115 (1133)
.+.||..+.+
T Consensus 115 -~~~E~~~~~i 124 (263)
T d1u94a1 115 -DTGEQALEIC 124 (263)
T ss_dssp -SSHHHHHHHH
T ss_pred -CCHHHHHHHH
Confidence 3455555544
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.93 E-value=0.015 Score=57.78 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=23.1
Q ss_pred eeCCCEEEEEcCCCCCHHHHHHHHhh
Q 041277 1027 IEAGKSTALVGQSGSGKSTIIGLIER 1052 (1133)
Q Consensus 1027 I~~Ge~vaIVG~SGSGKSTL~~LL~R 1052 (1133)
+++|+.+-|.||+||||||++.-++.
T Consensus 20 i~~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 20 IETGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence 89999999999999999999865553
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=93.93 E-value=0.01 Score=58.10 Aligned_cols=23 Identities=35% Similarity=0.544 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 041277 391 TVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
.+.|.||+||||||+.+.|+.-|
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47799999999999999998766
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.90 E-value=0.011 Score=60.31 Aligned_cols=27 Identities=22% Similarity=0.473 Sum_probs=24.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhhhcC
Q 041277 1029 AGKSTALVGQSGSGKSTIIGLIERFYD 1055 (1133)
Q Consensus 1029 ~Ge~vaIVG~SGSGKSTL~~LL~R~yd 1055 (1133)
++..|+|-|+.||||||++++|...++
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 367899999999999999999998774
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=93.83 E-value=0.013 Score=56.90 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 041277 391 TVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
.+.|+||+||||||+.+.|+.-|
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999876
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=93.83 E-value=0.0087 Score=58.08 Aligned_cols=21 Identities=43% Similarity=0.640 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHhc
Q 041277 392 VALVGGSGSGKSTVIALLQRF 412 (1133)
Q Consensus 392 ~~ivG~sGsGKSTll~~l~~~ 412 (1133)
+||+|++|+|||||++.|.|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999999874
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=93.82 E-value=0.014 Score=55.61 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 041277 1032 STALVGQSGSGKSTIIGLIERF 1053 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~ 1053 (1133)
+|+|||++|+|||||++.|.+=
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~ 25 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGE 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 6899999999999999998764
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=93.80 E-value=0.012 Score=57.85 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=21.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHhhhc
Q 041277 1031 KSTALVGQSGSGKSTIIGLIERFY 1054 (1133)
Q Consensus 1031 e~vaIVG~SGSGKSTL~~LL~R~y 1054 (1133)
-.|+|-|..||||||++++|.+-.
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 369999999999999999999866
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=93.77 E-value=0.01 Score=57.34 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhc
Q 041277 390 KTVALVGGSGSGKSTVIALLQRF 412 (1133)
Q Consensus 390 ~~~~ivG~sGsGKSTll~~l~~~ 412 (1133)
-+++|||++|+|||||++.+.+-
T Consensus 14 ~kI~lvG~~~vGKTsLl~~l~~~ 36 (186)
T d1f6ba_ 14 GKLVFLGLDNAGKTTLLHMLKDD 36 (186)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37899999999999999999764
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=93.76 E-value=0.014 Score=58.64 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcC
Q 041277 1032 STALVGQSGSGKSTIIGLIERFYD 1055 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~yd 1055 (1133)
.|||-||+||||||++++|..=|.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999988664
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.73 E-value=0.014 Score=56.58 Aligned_cols=24 Identities=29% Similarity=0.374 Sum_probs=21.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcC
Q 041277 1032 STALVGQSGSGKSTIIGLIERFYD 1055 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~yd 1055 (1133)
++.|+||.||||||+.+.|..-|.
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~~ 25 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999987764
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.72 E-value=0.021 Score=54.67 Aligned_cols=36 Identities=39% Similarity=0.520 Sum_probs=26.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhh-----hcCCCCCe-----EEECCcc
Q 041277 1032 STALVGQSGSGKSTIIGLIER-----FYDPLKGD-----VKIDDRD 1067 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R-----~ydp~~G~-----I~IdG~d 1067 (1133)
||+|||.+|+|||||++-+.. -|+|+.|. +.+||..
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~ 52 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRA 52 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCcccCcccccceeeeeeecccc
Confidence 699999999999999986643 34566553 4456643
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.72 E-value=0.017 Score=55.54 Aligned_cols=21 Identities=24% Similarity=0.499 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 041277 1032 STALVGQSGSGKSTIIGLIER 1052 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R 1052 (1133)
||++||++|+|||||++.+..
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 589999999999999998763
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.72 E-value=0.014 Score=55.68 Aligned_cols=22 Identities=45% Similarity=0.508 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHhcc
Q 041277 392 VALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 392 ~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
+.++|++||||||+.++|+..+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6688999999999999998765
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=93.62 E-value=0.016 Score=57.59 Aligned_cols=21 Identities=43% Similarity=0.593 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 041277 1032 STALVGQSGSGKSTIIGLIER 1052 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R 1052 (1133)
.|||.|.+||||||+++.|..
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998853
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.57 E-value=0.033 Score=53.17 Aligned_cols=21 Identities=33% Similarity=0.616 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 041277 391 TVALVGGSGSGKSTVIALLQR 411 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~ 411 (1133)
+++++|.+|+|||||++-+.+
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 578999999999999997765
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.54 E-value=0.019 Score=55.22 Aligned_cols=39 Identities=28% Similarity=0.294 Sum_probs=28.6
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCC
Q 041277 1028 EAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRS 1070 (1133)
Q Consensus 1028 ~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~ 1070 (1133)
++-+.|-+||++||||||+++-|+.- .|-+.|+.-+++.
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~~----~~~~~i~~D~~~~ 50 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLVS----AGYVHVNRDTLGS 50 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTGG----GTCEEEEHHHHCS
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh----cCCEEEchHHHHH
Confidence 55578899999999999999887643 3556666544443
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=93.51 E-value=0.016 Score=56.80 Aligned_cols=21 Identities=52% Similarity=0.771 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 041277 391 TVALVGGSGSGKSTVIALLQR 411 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~ 411 (1133)
++||.|++||||||+.+.|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=93.47 E-value=0.016 Score=59.78 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 041277 391 TVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
.++|+|++|+|||||+|.|+|.-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48999999999999999999853
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=93.45 E-value=0.017 Score=57.77 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=22.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcC
Q 041277 1032 STALVGQSGSGKSTIIGLIERFYD 1055 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~yd 1055 (1133)
.|+|-||.||||||+.++|..=|.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 789999999999999999987775
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=93.38 E-value=0.022 Score=54.14 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 041277 391 TVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
.++++|++|||||||++.+.+-.
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 58899999999999999998743
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=93.38 E-value=0.017 Score=59.86 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=26.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhccCCCccEEEECC
Q 041277 390 KTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDG 424 (1133)
Q Consensus 390 ~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g 424 (1133)
..+.++||+||||||+.+.|++.+.. +-+.+++
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~~--~~~~i~~ 65 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQG--NVIVIDN 65 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTT--CCEEECT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhc--ceEEEec
Confidence 35889999999999999999998753 3445554
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.33 E-value=0.018 Score=55.65 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 041277 391 TVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
.+.|+||+||||||..+.|+--|
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=93.30 E-value=0.016 Score=56.96 Aligned_cols=24 Identities=33% Similarity=0.542 Sum_probs=21.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 041277 390 KTVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 390 ~~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
-+++|-|+.||||||+++.|...+
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999998765
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=93.27 E-value=0.014 Score=62.25 Aligned_cols=28 Identities=21% Similarity=0.259 Sum_probs=23.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhhhcCCC
Q 041277 1030 GKSTALVGQSGSGKSTIIGLIERFYDPL 1057 (1133)
Q Consensus 1030 Ge~vaIVG~SGSGKSTL~~LL~R~ydp~ 1057 (1133)
.-+|||+|+.|||||||+..|.+.+...
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~~~ 81 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLIRE 81 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred ceEEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence 4578999999999999999998876543
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.26 E-value=0.029 Score=53.48 Aligned_cols=28 Identities=32% Similarity=0.483 Sum_probs=22.6
Q ss_pred EEEEEcCCCCCHHHHHHHHh-----hhcCCCCC
Q 041277 1032 STALVGQSGSGKSTIIGLIE-----RFYDPLKG 1059 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~-----R~ydp~~G 1059 (1133)
||.+||.+|+|||||++-+. .-|+|+-|
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~ 36 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLE 36 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCccCCcee
Confidence 68999999999999998766 34566655
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.21 E-value=0.02 Score=56.69 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHhh
Q 041277 1031 KSTALVGQSGSGKSTIIGLIER 1052 (1133)
Q Consensus 1031 e~vaIVG~SGSGKSTL~~LL~R 1052 (1133)
.+|+|||+.|+|||||++.|.+
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~ 22 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLT 22 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 3799999999999999988875
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=93.20 E-value=0.019 Score=57.63 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 041277 391 TVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
.++|-||+||||||+.++|+.-|
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57888999999999999999766
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.18 E-value=0.021 Score=54.62 Aligned_cols=28 Identities=18% Similarity=0.301 Sum_probs=21.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhh-----hcCCCCC
Q 041277 1032 STALVGQSGSGKSTIIGLIER-----FYDPLKG 1059 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R-----~ydp~~G 1059 (1133)
||++||++|+|||||++-+.+ -|.|+.|
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~ 39 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVG 39 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCS
T ss_pred EEEEECCCCcCHHHHHHHHHcCCCCcccccccc
Confidence 489999999999999997753 2455555
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.15 E-value=0.014 Score=59.22 Aligned_cols=27 Identities=26% Similarity=0.480 Sum_probs=24.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhccC
Q 041277 388 AGKTVALVGGSGSGKSTVIALLQRFYA 414 (1133)
Q Consensus 388 ~g~~~~ivG~sGsGKSTll~~l~~~~~ 414 (1133)
++++++|-|+.||||||++++|...++
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 467999999999999999999998763
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=93.14 E-value=0.011 Score=57.34 Aligned_cols=23 Identities=35% Similarity=0.458 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 041277 391 TVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
.++|+|++++|||||++.|.+..
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 59999999999999999998753
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=93.13 E-value=0.017 Score=61.60 Aligned_cols=27 Identities=22% Similarity=0.373 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhccCC
Q 041277 389 GKTVALVGGSGSGKSTVIALLQRFYAP 415 (1133)
Q Consensus 389 g~~~~ivG~sGsGKSTll~~l~~~~~~ 415 (1133)
.-.+||.||+|||||||++.|.+.+..
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~~ 80 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLIR 80 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 458999999999999999999876643
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=93.06 E-value=0.024 Score=56.07 Aligned_cols=38 Identities=29% Similarity=0.439 Sum_probs=25.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCccc
Q 041277 1031 KSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDI 1068 (1133)
Q Consensus 1031 e~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI 1068 (1133)
..+++|||+|+||||.+.=|...+.-..-+|.+=..|.
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt 47 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDT 47 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeccc
Confidence 57899999999999876555655553334555544444
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.05 E-value=0.022 Score=60.32 Aligned_cols=21 Identities=57% Similarity=0.781 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 041277 1032 STALVGQSGSGKSTIIGLIER 1052 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R 1052 (1133)
...|||++||||||++.+|.-
T Consensus 26 lnvlvG~NgsGKS~iL~Ai~~ 46 (308)
T d1e69a_ 26 VTAIVGPNGSGKSNIIDAIKW 46 (308)
T ss_dssp EEEEECCTTTCSTHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 789999999999999998854
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.04 E-value=0.041 Score=52.22 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 041277 391 TVALVGGSGSGKSTVIALLQR 411 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~ 411 (1133)
+++|+|++|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999998764
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.01 E-value=0.022 Score=55.14 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 041277 391 TVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
.+.|.||+||||||+.+.|+.-|
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998766
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.00 E-value=0.0087 Score=56.65 Aligned_cols=22 Identities=32% Similarity=0.431 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 041277 391 TVALVGGSGSGKSTVIALLQRF 412 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~ 412 (1133)
.++++|++|+|||||++.|.|.
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.98 E-value=0.025 Score=56.32 Aligned_cols=28 Identities=29% Similarity=0.266 Sum_probs=24.7
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHHhccC
Q 041277 387 PAGKTVALVGGSGSGKSTVIALLQRFYA 414 (1133)
Q Consensus 387 ~~g~~~~ivG~sGsGKSTll~~l~~~~~ 414 (1133)
++|.+++|-|+-||||||+.++|...+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999987553
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=92.97 E-value=0.022 Score=54.69 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=21.1
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhh
Q 041277 1028 EAGKSTALVGQSGSGKSTIIGLIER 1052 (1133)
Q Consensus 1028 ~~Ge~vaIVG~SGSGKSTL~~LL~R 1052 (1133)
++.=+|.+||+.|||||||++-|.+
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~ 37 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSM 37 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEEECCCCCCHHHHHHHHhc
Confidence 3444799999999999999998775
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.96 E-value=0.03 Score=53.00 Aligned_cols=28 Identities=21% Similarity=0.407 Sum_probs=22.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhh-----hcCCCCC
Q 041277 1032 STALVGQSGSGKSTIIGLIER-----FYDPLKG 1059 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R-----~ydp~~G 1059 (1133)
||++||..|+|||||++-+.. -|+|+.|
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~ 34 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIG 34 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCS
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCCcccccee
Confidence 689999999999999998763 4455545
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.90 E-value=0.023 Score=54.97 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 041277 1032 STALVGQSGSGKSTIIGLIERFY 1054 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~y 1054 (1133)
++.|.||.||||||+.+.|..-|
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998777
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=92.89 E-value=0.014 Score=60.59 Aligned_cols=24 Identities=25% Similarity=0.527 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcC
Q 041277 1032 STALVGQSGSGKSTIIGLIERFYD 1055 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~yd 1055 (1133)
.|||.|+|||||||+.+.|...+.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHh
Confidence 689999999999999999887664
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=92.87 E-value=0.023 Score=56.86 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 041277 391 TVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
+++|.||+||||||+.+.|+.-|
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 88999999999999999999766
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.83 E-value=0.025 Score=53.67 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 041277 1032 STALVGQSGSGKSTIIGLIER 1052 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R 1052 (1133)
||++||++|+|||||++-+..
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999986553
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=92.83 E-value=0.027 Score=56.03 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=24.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhccC
Q 041277 388 AGKTVALVGGSGSGKSTVIALLQRFYA 414 (1133)
Q Consensus 388 ~g~~~~ivG~sGsGKSTll~~l~~~~~ 414 (1133)
+|.+++|-|+-||||||+++.|...+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999987553
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=92.78 E-value=0.023 Score=56.39 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=18.6
Q ss_pred CCCEEEEEcCCCCCHHHHH-HHHhhh
Q 041277 1029 AGKSTALVGQSGSGKSTII-GLIERF 1053 (1133)
Q Consensus 1029 ~Ge~vaIVG~SGSGKSTL~-~LL~R~ 1053 (1133)
+-..+++|||+|+||||.+ +|-.+|
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3457899999999999875 444444
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.77 E-value=0.029 Score=53.76 Aligned_cols=21 Identities=29% Similarity=0.551 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 041277 391 TVALVGGSGSGKSTVIALLQR 411 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~ 411 (1133)
+++++|++|+|||||++.+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 478999999999999998875
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=92.72 E-value=0.012 Score=61.07 Aligned_cols=24 Identities=29% Similarity=0.595 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccC
Q 041277 391 TVALVGGSGSGKSTVIALLQRFYA 414 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~~~ 414 (1133)
++||.|+|||||||+.+.|...+.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHh
Confidence 799999999999999999877653
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.72 E-value=0.028 Score=62.32 Aligned_cols=27 Identities=30% Similarity=0.578 Sum_probs=22.0
Q ss_pred EEeeCCCEEEEEcCCCCCHHHHHHHHh
Q 041277 1025 IKIEAGKSTALVGQSGSGKSTIIGLIE 1051 (1133)
Q Consensus 1025 l~I~~Ge~vaIVG~SGSGKSTL~~LL~ 1051 (1133)
+...++...+|+||+||||||++.+|.
T Consensus 20 i~f~~~~l~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 20 VGFGESNFTSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred EeCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 334555688999999999999999883
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=92.71 E-value=0.024 Score=54.80 Aligned_cols=21 Identities=24% Similarity=0.463 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHhc
Q 041277 392 VALVGGSGSGKSTVIALLQRF 412 (1133)
Q Consensus 392 ~~ivG~sGsGKSTll~~l~~~ 412 (1133)
+||+|++.+|||||++.|.+.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEeCCCCcHHHHHHHHHHh
Confidence 899999999999999999863
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=92.69 E-value=0.26 Score=49.59 Aligned_cols=43 Identities=14% Similarity=0.199 Sum_probs=32.2
Q ss_pred CCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchh
Q 041277 518 PRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTI 561 (1133)
Q Consensus 518 ~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~ 561 (1133)
.+++|+||+=. |+......+.+.+++...+..+|++|++.+-+
T Consensus 116 ~kviiIde~d~-l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~i 158 (239)
T d1njfa_ 116 FKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 158 (239)
T ss_dssp SEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CEEEEEECccc-CCHHHHHHHHHHHhcCCCCeEEEEEcCCcccc
Confidence 46999999854 67777777777776555667888999987654
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.65 E-value=0.037 Score=52.63 Aligned_cols=20 Identities=20% Similarity=0.336 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 041277 1032 STALVGQSGSGKSTIIGLIE 1051 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~ 1051 (1133)
||.|||.+|+|||||++-+.
T Consensus 5 KivlvG~~~vGKTsLi~r~~ 24 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYC 24 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 68999999999999998765
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=92.64 E-value=0.029 Score=54.85 Aligned_cols=24 Identities=33% Similarity=0.620 Sum_probs=21.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcc
Q 041277 390 KTVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 390 ~~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
=.++|+||.||||||+.+.|+--|
T Consensus 7 mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 7 LRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHB
T ss_pred eeEEEECCCCCCHHHHHHHHHHHH
Confidence 367899999999999999999866
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=92.64 E-value=0.029 Score=53.63 Aligned_cols=31 Identities=29% Similarity=0.385 Sum_probs=24.6
Q ss_pred ccCccEEeeCCCEEEEEcCCCCCHHHHHHHHh
Q 041277 1020 FEGFSIKIEAGKSTALVGQSGSGKSTIIGLIE 1051 (1133)
Q Consensus 1020 L~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~ 1051 (1133)
++.-.+.+ .|.=|.|.|+||+||||++..|.
T Consensus 6 ~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~ 36 (177)
T d1knxa2 6 IHGVLLEV-FGVGVLLTGRSGIGKSECALDLI 36 (177)
T ss_dssp EEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred EEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence 45555555 78889999999999999986654
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=92.60 E-value=0.026 Score=55.89 Aligned_cols=20 Identities=50% Similarity=0.821 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 041277 391 TVALVGGSGSGKSTVIALLQ 410 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~ 410 (1133)
++||.|+.||||||+.+.+.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999885
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=92.56 E-value=0.038 Score=58.49 Aligned_cols=40 Identities=18% Similarity=0.376 Sum_probs=31.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCC
Q 041277 1030 GKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSY 1071 (1133)
Q Consensus 1030 Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i 1071 (1133)
+.-+-++||||+|||+|++.|++.... --+.+|+-++.+.
T Consensus 49 ~~~iLl~GPpG~GKT~lAkalA~~~~~--~~~~i~~s~~~~~ 88 (309)
T d1ofha_ 49 PKNILMIGPTGVGKTEIARRLAKLANA--PFIKVEATKFTEV 88 (309)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHTC--CEEEEEGGGGSSC
T ss_pred CceEEEECCCCCCHHHHHHHHhhcccc--chhcccccccccc
Confidence 345579999999999999999998753 3678887766433
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.54 E-value=0.03 Score=55.45 Aligned_cols=21 Identities=33% Similarity=0.409 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 041277 391 TVALVGGSGSGKSTVIALLQR 411 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~ 411 (1133)
.|+|+|++|+|||||++.+.+
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~ 22 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLT 22 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999986
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.53 E-value=0.052 Score=51.62 Aligned_cols=21 Identities=29% Similarity=0.558 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 041277 391 TVALVGGSGSGKSTVIALLQR 411 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~ 411 (1133)
++++||++|+|||||++-+..
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999998875
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=92.51 E-value=0.04 Score=52.63 Aligned_cols=25 Identities=28% Similarity=0.233 Sum_probs=20.9
Q ss_pred eeCCCEEEEEcCCCCCHHHHHHHHh
Q 041277 1027 IEAGKSTALVGQSGSGKSTIIGLIE 1051 (1133)
Q Consensus 1027 I~~Ge~vaIVG~SGSGKSTL~~LL~ 1051 (1133)
--.|.=|.|+|+||+||||++..|.
T Consensus 11 ~~~g~gvl~~G~sG~GKStlal~l~ 35 (176)
T d1kkma_ 11 DIYGLGVLITGDSGVGKSETALELV 35 (176)
T ss_dssp EETTEEEEEECCTTSCHHHHHHHHH
T ss_pred EECCEEEEEEeCCCCCHHHHHHHHH
Confidence 4467889999999999999986654
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=92.50 E-value=0.023 Score=56.43 Aligned_cols=27 Identities=26% Similarity=0.471 Sum_probs=20.5
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHHhcc
Q 041277 387 PAGKTVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 387 ~~g~~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
++..++++|||+|+||||.+-=|+..+
T Consensus 9 ~~p~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 9 EPPFVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 344578999999999998766666544
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=92.48 E-value=0.03 Score=55.65 Aligned_cols=22 Identities=41% Similarity=0.545 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 041277 1032 STALVGQSGSGKSTIIGLIERF 1053 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~ 1053 (1133)
.|||+|..||||||+++.|..+
T Consensus 5 iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHC
Confidence 5899999999999999988643
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.45 E-value=0.03 Score=54.23 Aligned_cols=20 Identities=25% Similarity=0.559 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 041277 1032 STALVGQSGSGKSTIIGLIE 1051 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~ 1051 (1133)
||++||.+|+|||||++-+.
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~ 23 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYV 23 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 68999999999999998766
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.45 E-value=0.047 Score=51.95 Aligned_cols=28 Identities=29% Similarity=0.405 Sum_probs=21.9
Q ss_pred EEEEEcCCCCCHHHHHHHHh-hh----cCCCCC
Q 041277 1032 STALVGQSGSGKSTIIGLIE-RF----YDPLKG 1059 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~-R~----ydp~~G 1059 (1133)
||++||.+|+|||||++-+. += |+|+.|
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~ 37 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIG 37 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSS
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCcccccccc
Confidence 78999999999999998544 32 456666
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.43 E-value=0.029 Score=54.21 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 041277 391 TVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
.+.|+||.||||||+.+.|+-.|
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999776
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=92.43 E-value=0.025 Score=54.24 Aligned_cols=21 Identities=24% Similarity=0.479 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 041277 1032 STALVGQSGSGKSTIIGLIER 1052 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R 1052 (1133)
+|++||++|+|||||++-|.+
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999997754
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.43 E-value=0.038 Score=48.75 Aligned_cols=43 Identities=14% Similarity=0.107 Sum_probs=32.4
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHH-hhhcCCCCC-eEE-ECCcccCC
Q 041277 1028 EAGKSTALVGQSGSGKSTIIGLI-ERFYDPLKG-DVK-IDDRDIRS 1070 (1133)
Q Consensus 1028 ~~Ge~vaIVG~SGSGKSTL~~LL-~R~ydp~~G-~I~-IdG~dI~~ 1070 (1133)
+.|=+|-+-|-||||||||+++| .+|.+-+.| .|. +||.+++.
T Consensus 4 kqgf~i~~tg~~~~gk~~ia~al~~~l~q~~G~R~vtll~~~ni~r 49 (122)
T d1g8fa3 4 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNNKTE 49 (122)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTTCHH
T ss_pred ccceEEEEeCCCCCCHHHHHHHHHHHHHHhcCCcceEEecCCCHHH
Confidence 45667889999999999999777 788776544 354 68876643
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.41 E-value=0.032 Score=55.49 Aligned_cols=28 Identities=25% Similarity=0.177 Sum_probs=24.3
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhhhcC
Q 041277 1028 EAGKSTALVGQSGSGKSTIIGLIERFYD 1055 (1133)
Q Consensus 1028 ~~Ge~vaIVG~SGSGKSTL~~LL~R~yd 1055 (1133)
++|-.|+|.|+-||||||++++|..-+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4788999999999999999999877543
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=92.41 E-value=0.033 Score=56.46 Aligned_cols=27 Identities=26% Similarity=0.293 Sum_probs=23.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccCCCc
Q 041277 391 TVALVGGSGSGKSTVIALLQRFYAPLG 417 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~~~~~~ 417 (1133)
.+.+.||+|+||||+.++|+..+....
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~~~ 63 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQTNI 63 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred eEEEECCCCCcHHHHHHHHHhccCCCc
Confidence 367999999999999999998876543
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=92.39 E-value=0.039 Score=55.83 Aligned_cols=54 Identities=17% Similarity=0.204 Sum_probs=37.2
Q ss_pred EEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcccccccccccc
Q 041277 1033 TALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLF 1090 (1133)
Q Consensus 1033 vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF 1090 (1133)
+-+.||+|+||||++++|.+-+.... +.++|.+.. ...++++.+.-..+...+|
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 91 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQTNI--HVTSGPVLV--KQGDMAAILTSLERGDVLF 91 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHTCCE--EEEETTTCC--SHHHHHHHHHHCCTTCEEE
T ss_pred EEEECCCCCcHHHHHHHHHhccCCCc--ccccCcccc--cHHHHHHHHHhhccCCchH
Confidence 57999999999999999999988764 456676654 3445555444444433333
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=92.30 E-value=0.031 Score=53.53 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=20.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHh
Q 041277 390 KTVALVGGSGSGKSTVIALLQR 411 (1133)
Q Consensus 390 ~~~~ivG~sGsGKSTll~~l~~ 411 (1133)
=.++++|.+|||||||++.|.+
T Consensus 16 ~kI~vvG~~~~GKSsLi~rl~~ 37 (177)
T d1zj6a1 16 HKVIIVGLDNAGKTTILYQFSM 37 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 3688999999999999999886
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=92.27 E-value=0.041 Score=51.49 Aligned_cols=31 Identities=23% Similarity=0.190 Sum_probs=27.2
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHHhccCC
Q 041277 385 TIPAGKTVALVGGSGSGKSTVIALLQRFYAP 415 (1133)
Q Consensus 385 ~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~ 415 (1133)
..++|.++++.|+=||||||+.+.+++-+-.
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~ 59 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred cCCCCeEEEEecCCCccHHHHHHHHHhhccc
Confidence 4578999999999999999999999987643
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=92.24 E-value=0.038 Score=60.80 Aligned_cols=88 Identities=18% Similarity=0.243 Sum_probs=50.7
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCe-EEECCcccCCCChhHHhhcccccccccccccccHHHHhccCCC---
Q 041277 1028 EAGKSTALVGQSGSGKSTIIGLIERFYDPLKGD-VKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGAS--- 1103 (1133)
Q Consensus 1028 ~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~-I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~--- 1103 (1133)
.++-.|-+.|||||||||.+..+.+..+....+ +.|- -++ ++.+...+ ++-+.+.+..=|..-++.-++.++.
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiE-dPi-E~~~~~~~-q~~v~~~~~~~~~~~l~~~lR~dPDvi~ 232 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVE-DPI-EFDIDGIG-QTQVNPRVDMTFARGLRAILRQDPDVVM 232 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEE-SSC-CSCCSSSE-EEECBGGGTBCHHHHHHHHGGGCCSEEE
T ss_pred hhhceEEEEcCCCCCccHHHHHHhhhhcCCCceEEEec-cCc-ccccCCCC-eeeecCCcCCCHHHHHHHHHhhcCCEEE
Confidence 466779999999999999999998876544444 4442 122 23332221 2333333333366667777777522
Q ss_pred -CCCCHHH-HHHHHHHc
Q 041277 1104 -DEIDESE-IVEAAKAA 1118 (1133)
Q Consensus 1104 -~~~sdee-i~~Al~~a 1118 (1133)
++..|.| ...|++.|
T Consensus 233 igEiRd~~ta~~a~~aa 249 (401)
T d1p9ra_ 233 VGEIRDLETAQIAVQAS 249 (401)
T ss_dssp ESCCCSHHHHHHHHHHH
T ss_pred ecCcCChHHHHHHHHHH
Confidence 2455544 44455444
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=92.22 E-value=0.036 Score=54.07 Aligned_cols=25 Identities=32% Similarity=0.630 Sum_probs=22.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHhhhcC
Q 041277 1031 KSTALVGQSGSGKSTIIGLIERFYD 1055 (1133)
Q Consensus 1031 e~vaIVG~SGSGKSTL~~LL~R~yd 1055 (1133)
=++.|+||.||||||+.+.|..=|.
T Consensus 7 mrIiliG~PGSGKtT~a~~La~~~g 31 (189)
T d2ak3a1 7 LRAAIMGAPGSGKGTVSSRITKHFE 31 (189)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHBC
T ss_pred eeEEEECCCCCCHHHHHHHHHHHHC
Confidence 3688999999999999999998763
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.19 E-value=0.032 Score=53.05 Aligned_cols=20 Identities=30% Similarity=0.423 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 041277 1032 STALVGQSGSGKSTIIGLIE 1051 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~ 1051 (1133)
||++||++|+|||||++-+.
T Consensus 5 Ki~viG~~~vGKTsli~~l~ 24 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLI 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 69999999999999998765
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.17 E-value=0.035 Score=56.21 Aligned_cols=25 Identities=28% Similarity=0.419 Sum_probs=23.0
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHH
Q 041277 386 IPAGKTVALVGGSGSGKSTVIALLQ 410 (1133)
Q Consensus 386 i~~g~~~~ivG~sGsGKSTll~~l~ 410 (1133)
+++|+++.|.||+|||||||..-++
T Consensus 31 i~~G~~~li~G~pGsGKT~l~lq~~ 55 (251)
T d1szpa2 31 VETGSITELFGEFRTGKSQLCHTLA 55 (251)
T ss_dssp EESSSEEEEEESTTSSHHHHHHHHT
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHHH
Confidence 8899999999999999999987665
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.15 E-value=0.035 Score=52.75 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 041277 1032 STALVGQSGSGKSTIIGLIER 1052 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R 1052 (1133)
||.+||.+|+|||||++-+..
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~ 25 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 789999999999999987753
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=92.15 E-value=0.028 Score=55.67 Aligned_cols=40 Identities=30% Similarity=0.400 Sum_probs=22.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCccc
Q 041277 1029 AGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDI 1068 (1133)
Q Consensus 1029 ~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI 1068 (1133)
.-..+++|||+|+||||.+.=|...|.-...+|-+=..|.
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt 50 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADV 50 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeec
Confidence 3456899999999999876555555543334554433443
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.13 E-value=0.035 Score=53.30 Aligned_cols=21 Identities=38% Similarity=0.707 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 041277 1032 STALVGQSGSGKSTIIGLIER 1052 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R 1052 (1133)
||++||++|+|||||++-+..
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999986643
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.07 E-value=0.057 Score=51.45 Aligned_cols=21 Identities=33% Similarity=0.621 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 041277 391 TVALVGGSGSGKSTVIALLQR 411 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~ 411 (1133)
+++++|.+|+|||||++-+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999997654
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.06 E-value=0.028 Score=58.30 Aligned_cols=21 Identities=33% Similarity=0.218 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 041277 1032 STALVGQSGSGKSTIIGLIER 1052 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R 1052 (1133)
.|||-|++||||||+...|..
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~ 49 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYN 49 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHH
Confidence 579999999999999976643
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.04 E-value=0.035 Score=53.79 Aligned_cols=21 Identities=29% Similarity=0.379 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 041277 1032 STALVGQSGSGKSTIIGLIER 1052 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R 1052 (1133)
||+|||++|+|||||++-+..
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 489999999999999987763
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.02 E-value=0.037 Score=52.69 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 041277 1032 STALVGQSGSGKSTIIGLIERFY 1054 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~y 1054 (1133)
||++||.+|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCcCHHHHHHHHhCCc
Confidence 68999999999999999887654
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=92.02 E-value=0.037 Score=52.45 Aligned_cols=20 Identities=40% Similarity=0.574 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 041277 1032 STALVGQSGSGKSTIIGLIE 1051 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~ 1051 (1133)
+|.++|++|+|||||++-+.
T Consensus 4 ki~i~G~~~~GKTsLl~~l~ 23 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIA 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999998664
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.99 E-value=0.036 Score=60.94 Aligned_cols=28 Identities=39% Similarity=0.523 Sum_probs=23.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccCCCcc
Q 041277 391 TVALVGGSGSGKSTVIALLQRFYAPLGG 418 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~~~~~~G 418 (1133)
.+||+|++|+|||||+|.|.|.-.-..|
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~~~~~ 85 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGNEEEG 85 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCc
Confidence 4899999999999999999996543333
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=91.99 E-value=0.039 Score=60.69 Aligned_cols=52 Identities=12% Similarity=0.298 Sum_probs=35.6
Q ss_pred HHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchhhcCCE
Q 041277 509 AIARAIIKAPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADV 566 (1133)
Q Consensus 509 ~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ 566 (1133)
++..+|=+||+++++.|.. |+++.+... +....|..|+..-|--+.+...+|
T Consensus 219 ~l~~~lR~dPDvi~igEiR---d~~ta~~a~---~aa~tGhlV~tTlHa~~a~~~~~R 270 (401)
T d1p9ra_ 219 GLRAILRQDPDVVMVGEIR---DLETAQIAV---QASLTGHLVMSTLHTNTAVGAVTR 270 (401)
T ss_dssp HHHHHGGGCCSEEEESCCC---SHHHHHHHH---HHHHTTCEEEEEECCSSSHHHHHH
T ss_pred HHHHHHhhcCCEEEecCcC---ChHHHHHHH---HHHhcCCeEEEEeccCchHhhhhh
Confidence 4556777899999999987 666655443 334458888888887665443443
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.97 E-value=0.04 Score=56.26 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccC
Q 041277 391 TVALVGGSGSGKSTVIALLQRFYA 414 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~~~ 414 (1133)
.+.+.||+|+||||++++|++.+.
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 577999999999999999998764
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.96 E-value=0.045 Score=54.56 Aligned_cols=27 Identities=26% Similarity=0.361 Sum_probs=24.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhccC
Q 041277 388 AGKTVALVGGSGSGKSTVIALLQRFYA 414 (1133)
Q Consensus 388 ~g~~~~ivG~sGsGKSTll~~l~~~~~ 414 (1133)
+|.+++|-|+-||||||++++|...+.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 699999999999999999999987664
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=91.94 E-value=0.3 Score=47.95 Aligned_cols=43 Identities=7% Similarity=0.182 Sum_probs=28.7
Q ss_pred CCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcch
Q 041277 517 APRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLST 560 (1133)
Q Consensus 517 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~ 560 (1133)
+.+++|+||+=. +...+...+.+.+++-.++...|++|++++.
T Consensus 108 ~~kviIide~d~-l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~ 150 (207)
T d1a5ta2 108 GAKVVWVTDAAL-LTDAAANALLKTLEEPPAETWFFLATREPER 150 (207)
T ss_dssp SCEEEEESCGGG-BCHHHHHHHHHHHTSCCTTEEEEEEESCGGG
T ss_pred ccceEEechhhh-hhhhhhHHHHHHHHhhcccceeeeeecChhh
Confidence 367999998632 4455566666666554445556889999764
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.93 E-value=0.039 Score=52.60 Aligned_cols=21 Identities=19% Similarity=0.433 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 041277 391 TVALVGGSGSGKSTVIALLQR 411 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~ 411 (1133)
+++++|++|+|||||++-+.+
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 388999999999999998764
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.88 E-value=0.054 Score=51.76 Aligned_cols=22 Identities=32% Similarity=0.620 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 041277 1032 STALVGQSGSGKSTIIGLIERF 1053 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~ 1053 (1133)
||.+||.+|+|||||++.+.+-
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~ 26 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGV 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 6899999999999999988653
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.87 E-value=0.059 Score=51.74 Aligned_cols=37 Identities=19% Similarity=0.328 Sum_probs=25.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHhh-h---cCCCCC-----eEEECCcc
Q 041277 1031 KSTALVGQSGSGKSTIIGLIER-F---YDPLKG-----DVKIDDRD 1067 (1133)
Q Consensus 1031 e~vaIVG~SGSGKSTL~~LL~R-~---ydp~~G-----~I~IdG~d 1067 (1133)
=+|+++|.+|+|||||++-+.. = ++|+.+ .|.+||.+
T Consensus 6 ~ki~vlG~~~vGKTsLi~~~~~~~f~~~~~t~~~~~~~~i~v~~~~ 51 (175)
T d2bmja1 6 LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQT 51 (175)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHSCCCCCCCSSCEEEEEEEEETTEE
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCCcCCccceeEEEEeecCceE
Confidence 3789999999999999985543 1 223322 46777754
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=91.84 E-value=0.041 Score=56.73 Aligned_cols=36 Identities=28% Similarity=0.339 Sum_probs=28.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccC
Q 041277 1032 STALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIR 1069 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~ 1069 (1133)
-+-++||+||||||+++.|++-+.. +-+.|++-+++
T Consensus 34 ~ilL~GpPGtGKT~la~~la~~~~~--~~~~i~~d~~~ 69 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSAIFEETQG--NVIVIDNDTFK 69 (273)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTTT--CCEEECTHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhc--ceEEEecHHHH
Confidence 3779999999999999999997753 45667764443
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=91.84 E-value=0.034 Score=58.94 Aligned_cols=25 Identities=24% Similarity=0.538 Sum_probs=21.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhccC
Q 041277 390 KTVALVGGSGSGKSTVIALLQRFYA 414 (1133)
Q Consensus 390 ~~~~ivG~sGsGKSTll~~l~~~~~ 414 (1133)
.-+.++||+|||||.|.++|++.+.
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHhhccc
Confidence 4556899999999999999999763
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=91.82 E-value=0.041 Score=54.61 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhhhcC
Q 041277 1029 AGKSTALVGQSGSGKSTIIGLIERFYD 1055 (1133)
Q Consensus 1029 ~Ge~vaIVG~SGSGKSTL~~LL~R~yd 1055 (1133)
+|..|+|-|+-||||||++++|...++
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999987553
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=91.75 E-value=0.072 Score=50.59 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 041277 391 TVALVGGSGSGKSTVIALLQR 411 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~ 411 (1133)
+++++|.+|+|||||++.+..
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 688999999999999998764
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.69 E-value=0.048 Score=52.17 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 041277 1032 STALVGQSGSGKSTIIGLIER 1052 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R 1052 (1133)
||.+||++|+|||||++-+.+
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999976654
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=91.67 E-value=0.053 Score=51.44 Aligned_cols=28 Identities=25% Similarity=0.204 Sum_probs=22.4
Q ss_pred cEEeeCCCEEEEEcCCCCCHHHHHHHHh
Q 041277 1024 SIKIEAGKSTALVGQSGSGKSTIIGLIE 1051 (1133)
Q Consensus 1024 sl~I~~Ge~vaIVG~SGSGKSTL~~LL~ 1051 (1133)
++-.-.|.=|.|+|+||+||||++..|.
T Consensus 9 ~~v~~~g~gvli~G~sg~GKS~la~~l~ 36 (169)
T d1ko7a2 9 VLVDVYGVGVLITGDSGIGKSETALELI 36 (169)
T ss_dssp EEEEETTEEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCEEEEEEeCCCCCHHHHHHHHH
Confidence 4445678889999999999999985544
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.66 E-value=0.04 Score=53.15 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 041277 1032 STALVGQSGSGKSTIIGLIERFY 1054 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~y 1054 (1133)
+|.|.||.||||||+.+.|.--|
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57799999999999999998876
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.66 E-value=0.04 Score=52.30 Aligned_cols=20 Identities=35% Similarity=0.524 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 041277 1032 STALVGQSGSGKSTIIGLIE 1051 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~ 1051 (1133)
||++||.+|+|||||++-+.
T Consensus 4 Ki~vvG~~~vGKTSli~~l~ 23 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFV 23 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 68999999999999998765
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=91.66 E-value=0.1 Score=53.49 Aligned_cols=74 Identities=19% Similarity=0.253 Sum_probs=50.8
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCC-eEEECCcccCCCChhHHhhcccccccccccccccHHHHhccCCCC
Q 041277 1026 KIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKG-DVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASD 1104 (1133)
Q Consensus 1026 ~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G-~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI~~g~~~ 1104 (1133)
=++.|..+-|.|++||||||++..++.-..-..| -++||... .++++. .+++|+ |+ ||+.+.+|+
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~--~~~~~~-a~~~Gv---d~--------d~i~~~~~~ 118 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH--ALDPVY-ARALGV---NT--------DELLVSQPD 118 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCHHH-HHHTTC---CG--------GGCEEECCS
T ss_pred CccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCc--cCCHHH-HHHhCC---Cc--------hhEEEEcCC
Confidence 4789999999999999999998777766553334 57888764 456654 456776 22 566666553
Q ss_pred CCCHHHHHHHH
Q 041277 1105 EIDESEIVEAA 1115 (1133)
Q Consensus 1105 ~~sdeei~~Al 1115 (1133)
+-|+..+.+
T Consensus 119 --~~E~~~~~~ 127 (268)
T d1xp8a1 119 --NGEQALEIM 127 (268)
T ss_dssp --SHHHHHHHH
T ss_pred --CHHHHHHHH
Confidence 445555544
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.65 E-value=0.043 Score=52.54 Aligned_cols=20 Identities=25% Similarity=0.499 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 041277 1032 STALVGQSGSGKSTIIGLIE 1051 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~ 1051 (1133)
||.+||++|+|||||++-+.
T Consensus 5 KivvvG~~~vGKTsli~r~~ 24 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFT 24 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHh
Confidence 58999999999999998765
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=91.63 E-value=0.044 Score=51.86 Aligned_cols=21 Identities=33% Similarity=0.496 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 041277 391 TVALVGGSGSGKSTVIALLQR 411 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~ 411 (1133)
.++++|++|+|||||++.+.+
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999998764
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=91.62 E-value=0.041 Score=56.84 Aligned_cols=66 Identities=20% Similarity=0.239 Sum_probs=30.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcCC--CCCeEEECCcccCCCChhHHhhcccccccccccccccHHHHh
Q 041277 1032 STALVGQSGSGKSTIIGLIERFYDP--LKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENI 1098 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~ydp--~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~LF~gTIreNI 1098 (1133)
.|||||..|||||||+..|+-.-.. ..|++. +|..+.+...++..+++++-..-..+--..-+-||
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~-~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~ 75 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVH-EGAATMDFMEQERERGITITAAVTTCFWKDHRINI 75 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSCC--------------------CCCCCCCSEEEEEETTEEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHhcCcccccccee-cCceEEeccHHHHhcCCccccceeeeccCCeEEEE
Confidence 4799999999999999888533221 236654 66667788888888888876554433222233354
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.51 E-value=0.081 Score=50.20 Aligned_cols=21 Identities=24% Similarity=0.490 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 041277 391 TVALVGGSGSGKSTVIALLQR 411 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~ 411 (1133)
+++++|..|+|||||++-+.+
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999997664
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=91.50 E-value=0.04 Score=56.92 Aligned_cols=33 Identities=18% Similarity=0.303 Sum_probs=29.0
Q ss_pred ccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcC
Q 041277 1023 FSIKIEAGKSTALVGQSGSGKSTIIGLIERFYD 1055 (1133)
Q Consensus 1023 isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~yd 1055 (1133)
.=+.|-.||+++|+|++|+|||||+.-+.+-..
T Consensus 36 ~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~ 68 (289)
T d1xpua3 36 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 68 (289)
T ss_dssp HHSCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred ecccccCCCeeeEeCCCCCCHHHHHHHHHHHHh
Confidence 346889999999999999999999999998553
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.43 E-value=0.048 Score=51.62 Aligned_cols=21 Identities=29% Similarity=0.491 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 041277 391 TVALVGGSGSGKSTVIALLQR 411 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~ 411 (1133)
+++++|++|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999987664
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.40 E-value=0.064 Score=51.05 Aligned_cols=28 Identities=32% Similarity=0.433 Sum_probs=22.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhh-----hcCCCCC
Q 041277 1032 STALVGQSGSGKSTIIGLIER-----FYDPLKG 1059 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R-----~ydp~~G 1059 (1133)
||.+||.+|+|||||++-+.. -|+|+.|
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~ 38 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIE 38 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCcccCccee
Confidence 688999999999999987653 4556554
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.40 E-value=0.048 Score=51.57 Aligned_cols=20 Identities=20% Similarity=0.293 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 041277 1032 STALVGQSGSGKSTIIGLIE 1051 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~ 1051 (1133)
||.+||.+|+|||||++-+.
T Consensus 4 Kv~liG~~~vGKTsLl~~~~ 23 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFC 23 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 58999999999999998765
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.40 E-value=0.044 Score=52.31 Aligned_cols=21 Identities=24% Similarity=0.582 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 041277 1032 STALVGQSGSGKSTIIGLIER 1052 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R 1052 (1133)
||.+||.+|+|||||++-+..
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999987764
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.39 E-value=0.048 Score=55.10 Aligned_cols=24 Identities=33% Similarity=0.537 Sum_probs=22.0
Q ss_pred eeCCCEEEEEcCCCCCHHHHHHHH
Q 041277 1027 IEAGKSTALVGQSGSGKSTIIGLI 1050 (1133)
Q Consensus 1027 I~~Ge~vaIVG~SGSGKSTL~~LL 1050 (1133)
+++|+.+-|.|++||||||++.-+
T Consensus 31 i~~G~~~li~G~pGsGKT~l~lq~ 54 (251)
T d1szpa2 31 VETGSITELFGEFRTGKSQLCHTL 54 (251)
T ss_dssp EESSSEEEEEESTTSSHHHHHHHH
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHH
Confidence 899999999999999999998544
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.38 E-value=0.046 Score=51.87 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 041277 391 TVALVGGSGSGKSTVIALLQR 411 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~ 411 (1133)
+++++|++|+|||||++.+.+
T Consensus 5 Ki~viG~~~vGKTsli~~l~~ 25 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999998875
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.37 E-value=0.048 Score=51.75 Aligned_cols=20 Identities=35% Similarity=0.566 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 041277 1032 STALVGQSGSGKSTIIGLIE 1051 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~ 1051 (1133)
||+|||.+|+|||||++-+.
T Consensus 6 Ki~lvG~~~vGKTsli~rl~ 25 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFV 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 68999999999999998775
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.30 E-value=0.053 Score=53.99 Aligned_cols=27 Identities=22% Similarity=0.330 Sum_probs=24.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhhhcC
Q 041277 1029 AGKSTALVGQSGSGKSTIIGLIERFYD 1055 (1133)
Q Consensus 1029 ~Ge~vaIVG~SGSGKSTL~~LL~R~yd 1055 (1133)
+|..|+|-|.-||||||++++|....+
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 689999999999999999999986665
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=91.30 E-value=0.075 Score=54.45 Aligned_cols=30 Identities=23% Similarity=0.371 Sum_probs=25.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhccCCCcc
Q 041277 389 GKTVALVGGSGSGKSTVIALLQRFYAPLGG 418 (1133)
Q Consensus 389 g~~~~ivG~sGsGKSTll~~l~~~~~~~~G 418 (1133)
...+.|.||+|+||||+++.++..+....+
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~~~~ 72 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKDKTT 72 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTTSCC
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHhcccC
Confidence 357889999999999999999998864433
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=91.28 E-value=0.05 Score=53.91 Aligned_cols=21 Identities=57% Similarity=0.738 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 041277 391 TVALVGGSGSGKSTVIALLQR 411 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~ 411 (1133)
++||+|+.||||||+.+.+..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 689999999999999998863
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.25 E-value=0.05 Score=52.10 Aligned_cols=21 Identities=43% Similarity=0.760 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 041277 391 TVALVGGSGSGKSTVIALLQR 411 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~ 411 (1133)
+++++|++|+|||||++.+.+
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999998765
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.19 E-value=0.05 Score=52.56 Aligned_cols=20 Identities=20% Similarity=0.356 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 041277 1032 STALVGQSGSGKSTIIGLIE 1051 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~ 1051 (1133)
||++||.+|+|||||++-+.
T Consensus 7 KivviG~~~vGKTsli~~~~ 26 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYT 26 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 79999999999999997654
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=91.19 E-value=0.052 Score=60.22 Aligned_cols=45 Identities=20% Similarity=0.423 Sum_probs=32.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccCCCccEEEECCeecCCCCHHHHhhhceEEecCC
Q 041277 391 TVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEP 446 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~ 446 (1133)
=+.++||||||||-|.+.|+++.+. =-+..|...++ ..|||..|.
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~V--PFv~~daT~fT---------eaGYvG~DV 95 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANA--PFIKVEATKFT---------EVGYVGKEV 95 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTC--CEEEEEGGGGC-------------CCCCT
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCC--CEEEeecceee---------ecceeecch
Confidence 4679999999999999999998754 25666665544 378888875
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=91.15 E-value=0.042 Score=52.59 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 041277 391 TVALVGGSGSGKSTVIALLQR 411 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~ 411 (1133)
.++++|++|+|||||++.+.+
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 588999999999999998865
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.10 E-value=0.09 Score=50.11 Aligned_cols=20 Identities=35% Similarity=0.579 Sum_probs=18.0
Q ss_pred EEEEcCCCCcHHHHHHHHHh
Q 041277 392 VALVGGSGSGKSTVIALLQR 411 (1133)
Q Consensus 392 ~~ivG~sGsGKSTll~~l~~ 411 (1133)
++++|++|+|||||++-+.+
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 88999999999999987764
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=91.09 E-value=0.1 Score=53.39 Aligned_cols=58 Identities=17% Similarity=0.161 Sum_probs=39.5
Q ss_pred eeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCC----ChhHHhhcccccccc
Q 041277 1027 IEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSY----HLRSLRRHIALVSQE 1086 (1133)
Q Consensus 1027 I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i----~l~~LR~~isiV~Qd 1086 (1133)
+++...+-+.||+|+|||++++.|.+-+... -+.+++-++.+- +...+|+-+....|.
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~~iA~~~~~~--~~~i~~~~l~~~~~g~~~~~l~~~f~~A~~~ 103 (256)
T d1lv7a_ 42 GKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDFVEMFVGVGASRVRDMFEQAKKA 103 (256)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCSSTTSCCCCCHHHHHHHHHHHHTT
T ss_pred CCCCCeEEeeCCCCCCccHHHHHHHHHcCCC--EEEEEhHHhhhcchhHHHHHHHHHHHHHHHc
Confidence 3344557899999999999999999987643 467777666432 234566655555443
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=91.08 E-value=0.045 Score=55.09 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 041277 391 TVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
.+.|.||+|+||||++++++..+
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 47899999999999999999865
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=91.08 E-value=0.046 Score=55.33 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHHhccC
Q 041277 392 VALVGGSGSGKSTVIALLQRFYA 414 (1133)
Q Consensus 392 ~~ivG~sGsGKSTll~~l~~~~~ 414 (1133)
+.+.||+|+||||+++++++.+.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 56999999999999999998754
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=91.07 E-value=0.051 Score=53.61 Aligned_cols=26 Identities=35% Similarity=0.489 Sum_probs=20.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhhhcC
Q 041277 1030 GKSTALVGQSGSGKSTIIGLIERFYD 1055 (1133)
Q Consensus 1030 Ge~vaIVG~SGSGKSTL~~LL~R~yd 1055 (1133)
+..+.+|||+|+||||.+.-|...+.
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45689999999999987766665554
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.05 E-value=0.052 Score=55.17 Aligned_cols=27 Identities=19% Similarity=0.128 Sum_probs=24.2
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHHh
Q 041277 385 TIPAGKTVALVGGSGSGKSTVIALLQR 411 (1133)
Q Consensus 385 ~i~~g~~~~ivG~sGsGKSTll~~l~~ 411 (1133)
=+++|+++.|.||+||||||+..-++.
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999999887764
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=91.03 E-value=0.052 Score=55.23 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=22.5
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHH
Q 041277 386 IPAGKTVALVGGSGSGKSTVIALLQ 410 (1133)
Q Consensus 386 i~~g~~~~ivG~sGsGKSTll~~l~ 410 (1133)
+++|+++.|.||+||||||+..-++
T Consensus 33 lp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 33 IETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 7899999999999999999987554
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=91.00 E-value=0.06 Score=53.99 Aligned_cols=24 Identities=29% Similarity=0.607 Sum_probs=21.7
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHH
Q 041277 386 IPAGKTVALVGGSGSGKSTVIALL 409 (1133)
Q Consensus 386 i~~g~~~~ivG~sGsGKSTll~~l 409 (1133)
+++|+++.|.|++|+|||||+.-+
T Consensus 23 i~~G~~~~I~G~~G~GKT~la~~~ 46 (242)
T d1tf7a1 23 LPIGRSTLVSGTSGTGKTLFSIQF 46 (242)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHH
Confidence 889999999999999999997543
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.98 E-value=0.07 Score=50.33 Aligned_cols=21 Identities=19% Similarity=0.436 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 041277 391 TVALVGGSGSGKSTVIALLQR 411 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~ 411 (1133)
+++++|..|+|||||++-+.+
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999998875
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=90.95 E-value=0.078 Score=50.56 Aligned_cols=32 Identities=34% Similarity=0.352 Sum_probs=25.9
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHH
Q 041277 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQ 410 (1133)
Q Consensus 378 ~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~ 410 (1133)
.++.-.+.+ .|.=+.|.|+||+||||+...+.
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~ 36 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLI 36 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence 456556666 78889999999999999987665
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=90.85 E-value=0.035 Score=53.61 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=18.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHh
Q 041277 1031 KSTALVGQSGSGKSTIIGLIE 1051 (1133)
Q Consensus 1031 e~vaIVG~SGSGKSTL~~LL~ 1051 (1133)
=||++||++|+|||||++-+.
T Consensus 18 ~KI~lvG~~~vGKTsLi~~l~ 38 (182)
T d1moza_ 18 LRILILGLDGAGKTTILYRLQ 38 (182)
T ss_dssp EEEEEEEETTSSHHHHHHHTC
T ss_pred EEEEEECCCCCCHHHHHHHHh
Confidence 478999999999999998764
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=90.84 E-value=0.055 Score=54.42 Aligned_cols=21 Identities=24% Similarity=0.471 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHHHHhhh
Q 041277 1033 TALVGQSGSGKSTIIGLIERF 1053 (1133)
Q Consensus 1033 vaIVG~SGSGKSTL~~LL~R~ 1053 (1133)
|||+|+..||||||++.|.+-
T Consensus 8 IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 8 VSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCccHHHHHHHHHhh
Confidence 999999999999999999875
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.82 E-value=0.058 Score=51.11 Aligned_cols=20 Identities=25% Similarity=0.501 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 041277 1032 STALVGQSGSGKSTIIGLIE 1051 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~ 1051 (1133)
||.|||.+|+|||||++-+.
T Consensus 6 KivlvG~~~vGKTsli~~~~ 25 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFT 25 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 58999999999999997765
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.77 E-value=0.055 Score=51.70 Aligned_cols=20 Identities=30% Similarity=0.380 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 041277 1032 STALVGQSGSGKSTIIGLIE 1051 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~ 1051 (1133)
||.|||.+|+|||||++-+.
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~ 27 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFI 27 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 68999999999999998665
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.73 E-value=0.061 Score=51.39 Aligned_cols=21 Identities=24% Similarity=0.523 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 041277 391 TVALVGGSGSGKSTVIALLQR 411 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~ 411 (1133)
++++||++|+|||||++-+.+
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTD 25 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 478999999999999998764
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.73 E-value=0.05 Score=54.84 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHhcc
Q 041277 392 VALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 392 ~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
+.+.||+|+||||+++++++.+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 7899999999999999999864
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.72 E-value=0.062 Score=50.91 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 041277 391 TVALVGGSGSGKSTVIALLQR 411 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~ 411 (1133)
+++++|++|+|||||++-+.+
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~ 25 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998875
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.72 E-value=0.061 Score=51.92 Aligned_cols=21 Identities=29% Similarity=0.569 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 041277 391 TVALVGGSGSGKSTVIALLQR 411 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~ 411 (1133)
+++++|.+|+|||||++-+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998774
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.68 E-value=0.039 Score=52.81 Aligned_cols=21 Identities=29% Similarity=0.491 Sum_probs=9.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 041277 1032 STALVGQSGSGKSTIIGLIER 1052 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R 1052 (1133)
||.+||.+|+|||||++.|.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999975553
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.65 E-value=0.056 Score=52.75 Aligned_cols=27 Identities=44% Similarity=0.682 Sum_probs=22.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh---cCCCCC
Q 041277 1032 STALVGQSGSGKSTIIGLIERF---YDPLKG 1059 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~---ydp~~G 1059 (1133)
||.|+|.+|+|||||++-+ +| +.|+-|
T Consensus 4 KivllG~~~vGKTsll~r~-~f~~~~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQM-RIIHGQDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHH-HHHHSCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHH-hcCCCCCCeee
Confidence 7899999999999999877 44 457778
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=90.61 E-value=0.06 Score=54.39 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=23.8
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHHh
Q 041277 386 IPAGKTVALVGGSGSGKSTVIALLQR 411 (1133)
Q Consensus 386 i~~g~~~~ivG~sGsGKSTll~~l~~ 411 (1133)
+++|+++.|.|++|+||||++.-++-
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 88999999999999999999887764
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.59 E-value=0.06 Score=50.95 Aligned_cols=21 Identities=33% Similarity=0.612 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 041277 391 TVALVGGSGSGKSTVIALLQR 411 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~ 411 (1133)
+++++|++|+|||||++.+..
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998765
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.56 E-value=0.065 Score=50.88 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 041277 391 TVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
+++++|++|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCcCHHHHHHHHhCCc
Confidence 47899999999999999987753
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=90.53 E-value=0.049 Score=56.69 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHhhh
Q 041277 1031 KSTALVGQSGSGKSTIIGLIERF 1053 (1133)
Q Consensus 1031 e~vaIVG~SGSGKSTL~~LL~R~ 1053 (1133)
=+|||||-.-+|||||+++|.+-
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHCC
Confidence 47999999999999999999963
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.53 E-value=0.059 Score=51.67 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=18.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHhh
Q 041277 1031 KSTALVGQSGSGKSTIIGLIER 1052 (1133)
Q Consensus 1031 e~vaIVG~SGSGKSTL~~LL~R 1052 (1133)
-||.+||.+|+|||||++-+..
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~~ 24 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNSK 24 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHHh
Confidence 3789999999999999977653
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.52 E-value=0.059 Score=51.47 Aligned_cols=20 Identities=25% Similarity=0.509 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 041277 1032 STALVGQSGSGKSTIIGLIE 1051 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~ 1051 (1133)
||++||..|+|||||++-+.
T Consensus 7 KI~lvG~~~vGKTsll~~~~ 26 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFI 26 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 48999999999999998765
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.52 E-value=0.063 Score=51.91 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 041277 391 TVALVGGSGSGKSTVIALLQR 411 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~ 411 (1133)
+++|+|++|+|||||++-+.+
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 388999999999999998874
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.49 E-value=0.062 Score=54.60 Aligned_cols=26 Identities=23% Similarity=0.242 Sum_probs=23.3
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHh
Q 041277 1026 KIEAGKSTALVGQSGSGKSTIIGLIE 1051 (1133)
Q Consensus 1026 ~I~~Ge~vaIVG~SGSGKSTL~~LL~ 1051 (1133)
=|++|+.+-|.|++||||||+..-+.
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~ 58 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLC 58 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHH
Confidence 38999999999999999999986664
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.49 E-value=0.11 Score=49.57 Aligned_cols=21 Identities=29% Similarity=0.496 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 041277 391 TVALVGGSGSGKSTVIALLQR 411 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~ 411 (1133)
.++++|++|+|||||++-+.+
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 688999999999999997765
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=90.46 E-value=0.068 Score=49.95 Aligned_cols=31 Identities=23% Similarity=0.193 Sum_probs=27.8
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhhhcCC
Q 041277 1026 KIEAGKSTALVGQSGSGKSTIIGLIERFYDP 1056 (1133)
Q Consensus 1026 ~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp 1056 (1133)
..+||..|.+.|+=||||||+++.+.+-+-.
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~ 59 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred cCCCCeEEEEecCCCccHHHHHHHHHhhccc
Confidence 4579999999999999999999999988754
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=90.45 E-value=0.094 Score=53.67 Aligned_cols=29 Identities=21% Similarity=0.445 Sum_probs=24.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHhhhcCCCCC
Q 041277 1031 KSTALVGQSGSGKSTIIGLIERFYDPLKG 1059 (1133)
Q Consensus 1031 e~vaIVG~SGSGKSTL~~LL~R~ydp~~G 1059 (1133)
..+-|+||+|+||||+++.|.+.+....+
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~l~~~~~ 72 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWELYKDKTT 72 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTTSCC
T ss_pred CceEEECCCCCCHHHHHHHHHHHHhcccC
Confidence 46889999999999999999998865444
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=90.44 E-value=0.065 Score=55.07 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHhcc
Q 041277 388 AGKTVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 388 ~g~~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
.+..+.|.||+|+|||||++-++...
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence 56789999999999999999887644
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.40 E-value=0.11 Score=49.21 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 041277 391 TVALVGGSGSGKSTVIALLQR 411 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~ 411 (1133)
.++++|.+|+|||||++-+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998765
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.39 E-value=0.044 Score=52.29 Aligned_cols=20 Identities=35% Similarity=0.533 Sum_probs=17.7
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 041277 1032 STALVGQSGSGKSTIIGLIE 1051 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~ 1051 (1133)
||++||.+|+|||||++-+.
T Consensus 5 Ki~vvG~~~vGKTsli~~~~ 24 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHL 24 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 68999999999999987653
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=90.38 E-value=0.062 Score=55.24 Aligned_cols=50 Identities=28% Similarity=0.311 Sum_probs=34.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc--CCCccEEEECCeecCCCCHHHHhhhceE
Q 041277 391 TVALVGGSGSGKSTVIALLQRFY--APLGGEIILDGVSIDKLQLKWLRSQMGL 441 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~~--~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 441 (1133)
-+||+|+.|||||||+..|+..- ....|++. +|..+.+....+..+++++
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~-~g~~~~D~~~~E~~r~~ti 55 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVE-EGTTTTDYTPEAKLHRTTV 55 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG-GTCCSSCCSHHHHHTTSCC
T ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCchhhccch-hccccccchHHHHHhCCeE
Confidence 47999999999999999996432 22345543 4556666777766666553
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.36 E-value=0.065 Score=51.04 Aligned_cols=21 Identities=24% Similarity=0.643 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 041277 391 TVALVGGSGSGKSTVIALLQR 411 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~ 411 (1133)
+++++|++|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999998875
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=90.35 E-value=0.072 Score=53.34 Aligned_cols=37 Identities=22% Similarity=0.267 Sum_probs=27.7
Q ss_pred eeCCCEEEEEcCCCCCHHHHH-HHHhhhcCCCCCeEEE
Q 041277 1027 IEAGKSTALVGQSGSGKSTII-GLIERFYDPLKGDVKI 1063 (1133)
Q Consensus 1027 I~~Ge~vaIVG~SGSGKSTL~-~LL~R~ydp~~G~I~I 1063 (1133)
+++|+.+-|.|++|+||||++ +++..........+++
T Consensus 23 i~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~ 60 (242)
T d1tf7a1 23 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVF 60 (242)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEE
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCccc
Confidence 899999999999999999997 4555444333344554
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=90.32 E-value=0.066 Score=53.78 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 041277 391 TVALVGGSGSGKSTVIALLQRF 412 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~ 412 (1133)
++||+|+..||||||++.|++.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 5999999999999999999875
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.27 E-value=0.067 Score=55.37 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 041277 391 TVALVGGSGSGKSTVIALLQRF 412 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~ 412 (1133)
++||-|+.|||||||.+.|.-.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHH
Confidence 7899999999999999877543
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=90.23 E-value=0.062 Score=56.97 Aligned_cols=25 Identities=36% Similarity=0.481 Sum_probs=21.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcc
Q 041277 389 GKTVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 389 g~~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
.-.++|.||.|+|||||+..|...+
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEeeeCCCCCCHHHHHHHHHHHH
Confidence 3479999999999999999998754
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.15 E-value=0.072 Score=50.65 Aligned_cols=21 Identities=33% Similarity=0.555 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 041277 1032 STALVGQSGSGKSTIIGLIER 1052 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R 1052 (1133)
||++||+.|+|||||++-+..
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 599999999999999986543
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=90.14 E-value=0.069 Score=54.87 Aligned_cols=26 Identities=27% Similarity=0.259 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhhhc
Q 041277 1029 AGKSTALVGQSGSGKSTIIGLIERFY 1054 (1133)
Q Consensus 1029 ~Ge~vaIVG~SGSGKSTL~~LL~R~y 1054 (1133)
.+..+.|+||+|+|||||++-+++-.
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence 56789999999999999998776543
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.13 E-value=0.071 Score=50.67 Aligned_cols=20 Identities=30% Similarity=0.444 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 041277 1032 STALVGQSGSGKSTIIGLIE 1051 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~ 1051 (1133)
||.+||.+|+|||||++-+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~ 27 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFV 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 68999999999999998776
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=90.03 E-value=0.072 Score=53.76 Aligned_cols=25 Identities=32% Similarity=0.419 Sum_probs=22.6
Q ss_pred eeCCCEEEEEcCCCCCHHHHHHHHh
Q 041277 1027 IEAGKSTALVGQSGSGKSTIIGLIE 1051 (1133)
Q Consensus 1027 I~~Ge~vaIVG~SGSGKSTL~~LL~ 1051 (1133)
+++|+.+-|.|++|+||||++.-+.
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a 55 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSC 55 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHH
Confidence 8999999999999999999975554
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=89.98 E-value=0.043 Score=54.22 Aligned_cols=22 Identities=18% Similarity=0.398 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 041277 1032 STALVGQSGSGKSTIIGLIERF 1053 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~ 1053 (1133)
.|||+|+.+||||||+..|+..
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHHH
Confidence 4899999999999999998643
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.98 E-value=0.089 Score=50.14 Aligned_cols=23 Identities=35% Similarity=0.561 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 041277 391 TVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
+++++|.+|+|||||++.+.+..
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCc
Confidence 47899999999999999988654
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.95 E-value=0.079 Score=49.94 Aligned_cols=21 Identities=19% Similarity=0.354 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 041277 391 TVALVGGSGSGKSTVIALLQR 411 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~ 411 (1133)
+++++|..|+|||||++-+..
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999997764
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.94 E-value=0.096 Score=50.28 Aligned_cols=28 Identities=25% Similarity=0.434 Sum_probs=21.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhh-----hcCCCCC
Q 041277 1032 STALVGQSGSGKSTIIGLIER-----FYDPLKG 1059 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R-----~ydp~~G 1059 (1133)
||.+||.+|+|||||++-+.. -|+|+-|
T Consensus 4 KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~ 36 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF 36 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCCccCCcee
Confidence 789999999999999975543 3556544
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.90 E-value=0.13 Score=52.26 Aligned_cols=35 Identities=26% Similarity=0.329 Sum_probs=26.5
Q ss_pred EEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccC
Q 041277 1033 TALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIR 1069 (1133)
Q Consensus 1033 vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~ 1069 (1133)
+-|.||+|+||||++++|++-...+ -+.+++.+.+
T Consensus 55 lll~GPpG~GKTt~a~~la~~~~~~--~~~~~~~~~~ 89 (253)
T d1sxja2 55 AMLYGPPGIGKTTAAHLVAQELGYD--ILEQNASDVR 89 (253)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTTCE--EEEECTTSCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhh--hhccccccch
Confidence 5699999999999999999977643 3455555443
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=89.90 E-value=0.068 Score=56.65 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhhhc
Q 041277 1030 GKSTALVGQSGSGKSTIIGLIERFY 1054 (1133)
Q Consensus 1030 Ge~vaIVG~SGSGKSTL~~LL~R~y 1054 (1133)
.-+|||.|+.|+|||||+..|.+.+
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEeeeCCCCCCHHHHHHHHHHHH
Confidence 4568999999999999998888754
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.86 E-value=0.08 Score=50.06 Aligned_cols=21 Identities=24% Similarity=0.495 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 041277 391 TVALVGGSGSGKSTVIALLQR 411 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~ 411 (1133)
+++|+|.+|+|||||++-+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999988765
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.84 E-value=0.072 Score=52.42 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 041277 391 TVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
+++|-|.-||||||+++.|...+
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999998755
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=89.83 E-value=0.07 Score=55.04 Aligned_cols=32 Identities=19% Similarity=0.255 Sum_probs=28.2
Q ss_pred eEEeeCCCEEEEEcCCCCcHHHHHHHHHhccC
Q 041277 383 CLTIPAGKTVALVGGSGSGKSTVIALLQRFYA 414 (1133)
Q Consensus 383 ~l~i~~g~~~~ivG~sGsGKSTll~~l~~~~~ 414 (1133)
=+.|-+||..+|+|++|+|||||+..|.+-..
T Consensus 37 l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~ 68 (289)
T d1xpua3 37 ASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 68 (289)
T ss_dssp HSCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred cccccCCCeeeEeCCCCCCHHHHHHHHHHHHh
Confidence 36788999999999999999999999987543
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.83 E-value=0.078 Score=50.78 Aligned_cols=21 Identities=29% Similarity=0.531 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 041277 1032 STALVGQSGSGKSTIIGLIER 1052 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R 1052 (1133)
||.+||..|+|||||++-+..
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999997754
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=89.78 E-value=0.077 Score=53.85 Aligned_cols=22 Identities=36% Similarity=0.540 Sum_probs=20.8
Q ss_pred eeCCCEEEEEcCCCCCHHHHHH
Q 041277 1027 IEAGKSTALVGQSGSGKSTIIG 1048 (1133)
Q Consensus 1027 I~~Ge~vaIVG~SGSGKSTL~~ 1048 (1133)
+++|+.+-|.|++||||||+..
T Consensus 33 lp~G~~~li~G~pGsGKT~~~l 54 (254)
T d1pzna2 33 IETQAITEVFGEFGSGKTQLAH 54 (254)
T ss_dssp EESSEEEEEEESTTSSHHHHHH
T ss_pred ccCCEEEEEEcCCCCCHHHHHH
Confidence 8999999999999999999974
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=89.74 E-value=0.086 Score=53.19 Aligned_cols=49 Identities=14% Similarity=0.186 Sum_probs=32.7
Q ss_pred eeCCCEEEEEcCCCCCHHHHH-HHHhhhcCCCCCeEEECCcccCCCChhHHhhc
Q 041277 1027 IEAGKSTALVGQSGSGKSTII-GLIERFYDPLKGDVKIDDRDIRSYHLRSLRRH 1079 (1133)
Q Consensus 1027 I~~Ge~vaIVG~SGSGKSTL~-~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~ 1079 (1133)
+++|+.+-|.|++||||||++ +++........-.++++- +.+.+.++++
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is~----e~~~~~~~~~ 72 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAY----EESRAQLLRN 72 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEES----SSCHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHHHHHHHhccccceeec----cCCHHHHHHH
Confidence 899999999999999999997 455555443333444432 3344554443
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.70 E-value=0.074 Score=51.87 Aligned_cols=20 Identities=35% Similarity=0.526 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 041277 1032 STALVGQSGSGKSTIIGLIE 1051 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~ 1051 (1133)
||+|||+.|+|||||++-+.
T Consensus 8 KivvvG~~~vGKTsli~~l~ 27 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFS 27 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHh
Confidence 48999999999999998665
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.57 E-value=0.088 Score=49.81 Aligned_cols=21 Identities=33% Similarity=0.601 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 041277 391 TVALVGGSGSGKSTVIALLQR 411 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~ 411 (1133)
+++|+|.+|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999998864
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.51 E-value=0.083 Score=50.57 Aligned_cols=21 Identities=19% Similarity=0.512 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 041277 391 TVALVGGSGSGKSTVIALLQR 411 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~ 411 (1133)
+++|+|++|+|||||++.+.+
T Consensus 4 KivvvG~~~vGKTsLi~~~~~ 24 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSK 24 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999988775
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=89.51 E-value=0.068 Score=53.71 Aligned_cols=21 Identities=29% Similarity=0.354 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhhh
Q 041277 1033 TALVGQSGSGKSTIIGLIERF 1053 (1133)
Q Consensus 1033 vaIVG~SGSGKSTL~~LL~R~ 1053 (1133)
+-|.||+|+||||+++++.+-
T Consensus 48 lll~Gp~G~GKTtla~~iak~ 68 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALARE 68 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 679999999999999999874
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=89.46 E-value=0.076 Score=54.01 Aligned_cols=23 Identities=30% Similarity=0.326 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 041277 391 TVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
-+.+.||+|||||++++.|+...
T Consensus 42 ~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhhcc
Confidence 57899999999999999999754
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=89.39 E-value=0.091 Score=54.32 Aligned_cols=34 Identities=21% Similarity=0.348 Sum_probs=26.8
Q ss_pred ccCccEEeeCCCEEEEEcCCCCCHHHHHHHHh-hh
Q 041277 1020 FEGFSIKIEAGKSTALVGQSGSGKSTIIGLIE-RF 1053 (1133)
Q Consensus 1020 L~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~-R~ 1053 (1133)
|+++.-=+.||+.+.|.|+||+||||++.-+. .+
T Consensus 25 lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~ 59 (277)
T d1cr2a_ 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (277)
T ss_dssp HHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHhh
Confidence 55554347999999999999999999975555 44
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.37 E-value=0.09 Score=50.62 Aligned_cols=21 Identities=19% Similarity=0.387 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 041277 391 TVALVGGSGSGKSTVIALLQR 411 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~ 411 (1133)
+++|+|.+|+|||||++-+..
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999987764
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.33 E-value=0.094 Score=49.60 Aligned_cols=21 Identities=24% Similarity=0.397 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 041277 391 TVALVGGSGSGKSTVIALLQR 411 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~ 411 (1133)
+++|+|.+|+|||||++-+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999997764
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.32 E-value=0.088 Score=51.76 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 041277 1032 STALVGQSGSGKSTIIGLIERFY 1054 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~y 1054 (1133)
.|+|-|.-||||||++++|...+
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998655
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.26 E-value=0.093 Score=50.19 Aligned_cols=21 Identities=29% Similarity=0.602 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 041277 391 TVALVGGSGSGKSTVIALLQR 411 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~ 411 (1133)
+++++|..|+|||||++.+.+
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999998875
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=89.21 E-value=0.086 Score=53.29 Aligned_cols=22 Identities=36% Similarity=0.348 Sum_probs=19.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHhh
Q 041277 1031 KSTALVGQSGSGKSTIIGLIER 1052 (1133)
Q Consensus 1031 e~vaIVG~SGSGKSTL~~LL~R 1052 (1133)
..|||.|.-||||||+++.|..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999953
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.21 E-value=0.094 Score=49.61 Aligned_cols=20 Identities=25% Similarity=0.406 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 041277 1032 STALVGQSGSGKSTIIGLIE 1051 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~ 1051 (1133)
||.+||.+|+|||||++-+.
T Consensus 5 KivvvG~~~vGKTsli~r~~ 24 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999998764
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.19 E-value=0.14 Score=49.08 Aligned_cols=21 Identities=24% Similarity=0.612 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 041277 391 TVALVGGSGSGKSTVIALLQR 411 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~ 411 (1133)
+++++|.+|+|||||++-+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999986654
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=89.18 E-value=0.14 Score=48.78 Aligned_cols=33 Identities=30% Similarity=0.372 Sum_probs=24.3
Q ss_pred cccceeEEeeCCCEEEEEcCCCCcHHHHHHHHHh
Q 041277 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQR 411 (1133)
Q Consensus 378 ~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~~ 411 (1133)
.++.--+.+ .|.=+.|+|+||+||||+...+..
T Consensus 4 ~lH~~~v~~-~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 4 SMHGVLVDI-YGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEEEEEEE-TTEEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHH
Confidence 344444433 577899999999999998876653
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.17 E-value=0.087 Score=50.87 Aligned_cols=20 Identities=20% Similarity=0.375 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 041277 1032 STALVGQSGSGKSTIIGLIE 1051 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~ 1051 (1133)
||+|||.+|+|||||++-+.
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~ 30 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYA 30 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999997655
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.15 E-value=0.091 Score=50.05 Aligned_cols=21 Identities=24% Similarity=0.545 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 041277 391 TVALVGGSGSGKSTVIALLQR 411 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~ 411 (1133)
+++++|..|+|||||++-+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 389999999999999998764
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.11 E-value=0.074 Score=53.51 Aligned_cols=21 Identities=24% Similarity=0.415 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHhhh
Q 041277 1033 TALVGQSGSGKSTIIGLIERF 1053 (1133)
Q Consensus 1033 vaIVG~SGSGKSTL~~LL~R~ 1053 (1133)
+-|.||+|+||||+++++.+-
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 679999999999999999985
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.01 E-value=0.096 Score=49.90 Aligned_cols=21 Identities=33% Similarity=0.626 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 041277 391 TVALVGGSGSGKSTVIALLQR 411 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~ 411 (1133)
+++|+|.+|+|||||++-+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999997764
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=89.01 E-value=0.059 Score=51.88 Aligned_cols=21 Identities=33% Similarity=0.577 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 041277 391 TVALVGGSGSGKSTVIALLQR 411 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~ 411 (1133)
.++++|++|+|||||++-+.+
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 588999999999999998753
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.85 E-value=0.15 Score=49.07 Aligned_cols=30 Identities=33% Similarity=0.396 Sum_probs=25.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcCCCCCeE
Q 041277 1032 STALVGQSGSGKSTIIGLIERFYDPLKGDV 1061 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I 1061 (1133)
||.+||..|+|||||++-+..-.-|+.|-.
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~~~ 33 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTGIV 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCccEE
Confidence 689999999999999987776667777743
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.77 E-value=0.099 Score=50.90 Aligned_cols=20 Identities=35% Similarity=0.619 Sum_probs=18.3
Q ss_pred EEEEcCCCCcHHHHHHHHHh
Q 041277 392 VALVGGSGSGKSTVIALLQR 411 (1133)
Q Consensus 392 ~~ivG~sGsGKSTll~~l~~ 411 (1133)
++|+|+.|+|||||++-+..
T Consensus 9 ivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhh
Confidence 88999999999999998764
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.69 E-value=0.086 Score=55.29 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 041277 1032 STALVGQSGSGKSTIIGLIERFY 1054 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~y 1054 (1133)
.+++||...|||||++++|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999954
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.65 E-value=0.091 Score=52.45 Aligned_cols=44 Identities=16% Similarity=0.303 Sum_probs=29.6
Q ss_pred CCCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcchh
Q 041277 517 APRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTI 561 (1133)
Q Consensus 517 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~ 561 (1133)
+.+++++||.-. +.......+...+.+.......++++++.+.+
T Consensus 101 ~~kviiiDe~d~-~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i 144 (224)
T d1sxjb2 101 KHKIVILDEADS-MTAGAQQALRRTMELYSNSTRFAFACNQSNKI 144 (224)
T ss_dssp CCEEEEEESGGG-SCHHHHHTTHHHHHHTTTTEEEEEEESCGGGS
T ss_pred ceEEEEEecccc-cchhHHHHHhhhccccccceeeeeccCchhhh
Confidence 467999999764 44445555666666655567778888887654
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.52 E-value=0.072 Score=50.83 Aligned_cols=21 Identities=33% Similarity=0.594 Sum_probs=9.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 041277 391 TVALVGGSGSGKSTVIALLQR 411 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~ 411 (1133)
+++++|.+|+|||||++.+++
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999986654
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=88.38 E-value=0.15 Score=51.25 Aligned_cols=35 Identities=23% Similarity=0.198 Sum_probs=25.8
Q ss_pred EEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccC
Q 041277 1033 TALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIR 1069 (1133)
Q Consensus 1033 vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~ 1069 (1133)
+-+.||+|+||||+++++.+-+... ....+|.++.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~~~--~~~~~~~~~~ 72 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELGVN--LRVTSGPAIE 72 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCC--EEEEETTTCC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCC--eEeccCCccc
Confidence 4599999999999999999977543 2344444443
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.37 E-value=0.14 Score=48.48 Aligned_cols=21 Identities=29% Similarity=0.532 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 041277 391 TVALVGGSGSGKSTVIALLQR 411 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~ 411 (1133)
+++++|.+|+|||||++-+..
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999998874
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=88.35 E-value=0.098 Score=55.44 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 041277 1032 STALVGQSGSGKSTIIGLIERF 1053 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~ 1053 (1133)
+|||||..-+|||||+++|.+-
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred cEeEECCCCCCHHHHHHHHHCC
Confidence 6999999999999999999774
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=88.32 E-value=0.11 Score=57.53 Aligned_cols=34 Identities=18% Similarity=0.422 Sum_probs=26.5
Q ss_pred EEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCccc
Q 041277 1033 TALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDI 1068 (1133)
Q Consensus 1033 vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI 1068 (1133)
|-+|||||||||-|++.|+++.+.. =+..|+...
T Consensus 52 ILliGPTGvGKTlLAr~LAk~l~VP--Fv~~daT~f 85 (443)
T d1g41a_ 52 ILMIGPTGVGKTEIARRLAKLANAP--FIKVEATKF 85 (443)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCC--EEEEEGGGG
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCC--EEEeeccee
Confidence 4699999999999999999998764 344444443
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.26 E-value=0.073 Score=50.64 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=17.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 041277 391 TVALVGGSGSGKSTVIALLQR 411 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~ 411 (1133)
+++++|++|+|||||++.+..
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC-
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999986643
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.17 E-value=0.11 Score=50.37 Aligned_cols=20 Identities=20% Similarity=0.356 Sum_probs=17.5
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 041277 1032 STALVGQSGSGKSTIIGLIE 1051 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~ 1051 (1133)
||++||.+|+|||||++-+.
T Consensus 5 KvvllG~~~vGKTSli~r~~ 24 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYT 24 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 69999999999999986553
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.07 E-value=0.14 Score=52.36 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 041277 391 TVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
-+.+.||+|||||++++.+++..
T Consensus 40 giLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 40 GILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eeEEecCCCCCchHHHHHHHHHh
Confidence 37799999999999999999865
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.07 E-value=0.13 Score=48.81 Aligned_cols=21 Identities=38% Similarity=0.654 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 041277 391 TVALVGGSGSGKSTVIALLQR 411 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~ 411 (1133)
+++++|+.|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999997654
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=88.05 E-value=0.081 Score=50.43 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 041277 1032 STALVGQSGSGKSTIIGLIER 1052 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R 1052 (1133)
+|.+||++|+|||||++-+..
T Consensus 14 kIvlvG~~~vGKTSli~rl~~ 34 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKL 34 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999987763
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.97 E-value=0.17 Score=51.69 Aligned_cols=48 Identities=19% Similarity=0.183 Sum_probs=34.1
Q ss_pred CccEEeeCCCEEEEEcCCCCCHHHHHHHHhhh-cCCCCCeEEECCcccC
Q 041277 1022 GFSIKIEAGKSTALVGQSGSGKSTIIGLIERF-YDPLKGDVKIDDRDIR 1069 (1133)
Q Consensus 1022 ~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~-ydp~~G~I~IdG~dI~ 1069 (1133)
|.=+.+-+||+++|.|++|+|||||+.-+.+= -.-+.+-+.+-++.-+
T Consensus 60 D~l~pigkGQr~~If~~~g~GKt~l~~~i~~~~~~~~~~v~V~~~iGer 108 (276)
T d2jdid3 60 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGER 108 (276)
T ss_dssp HHHSCEETTCEEEEEECTTSSHHHHHHHHHHHHTTTCSSEEEEEEESCC
T ss_pred eeeccccCCCEEEeeCCCCCCHHHHHHHHHHHHHhhCCCeEEEEEeccC
Confidence 34468999999999999999999998777654 3333454444454443
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.89 E-value=0.1 Score=53.86 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=21.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHhhhc
Q 041277 1031 KSTALVGQSGSGKSTIIGLIERFY 1054 (1133)
Q Consensus 1031 e~vaIVG~SGSGKSTL~~LL~R~y 1054 (1133)
..|+|+|+.++|||||++.|++-.
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 589999999999999999999744
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=87.89 E-value=0.17 Score=47.72 Aligned_cols=26 Identities=35% Similarity=0.343 Sum_probs=21.1
Q ss_pred eeCCCEEEEEcCCCCcHHHHHHHHHh
Q 041277 386 IPAGKTVALVGGSGSGKSTVIALLQR 411 (1133)
Q Consensus 386 i~~g~~~~ivG~sGsGKSTll~~l~~ 411 (1133)
.-.|.=+.|.|+||+||||+.-.+..
T Consensus 12 ~~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 12 DVYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred EECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 34688999999999999998865543
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.86 E-value=0.11 Score=51.93 Aligned_cols=42 Identities=14% Similarity=0.339 Sum_probs=30.2
Q ss_pred CCEEEEeCcccCCChHHHHHHHHHHHHHhCCCeEEEEecCcch
Q 041277 518 PRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLST 560 (1133)
Q Consensus 518 ~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~ 560 (1133)
.+++++||.- .+.......+.+.+.+..+...+++++++...
T Consensus 100 ~kiiiiDe~d-~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~ 141 (227)
T d1sxjc2 100 FKLIILDEAD-AMTNAAQNALRRVIERYTKNTRFCVLANYAHK 141 (227)
T ss_dssp CEEEEETTGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred eEEEEEeccc-cchhhHHHHHHHHhhhcccceeeccccCcHHH
Confidence 4699999974 56667777788888776655566677777654
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=87.84 E-value=0.075 Score=50.67 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 041277 391 TVALVGGSGSGKSTVIALLQRF 412 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~ 412 (1133)
.+.++|++|+|||||++.+.+-
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~ 35 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLG 35 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999988653
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=87.82 E-value=0.11 Score=54.57 Aligned_cols=23 Identities=30% Similarity=0.366 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 041277 1032 STALVGQSGSGKSTIIGLIERFY 1054 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~y 1054 (1133)
.+++||...|||||++++|+|.-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999964
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=87.80 E-value=0.14 Score=54.02 Aligned_cols=37 Identities=16% Similarity=0.232 Sum_probs=29.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccC
Q 041277 1031 KSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIR 1069 (1133)
Q Consensus 1031 e~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~ 1069 (1133)
..+-++||||+|||.|++.|.+.+.. --|.+|..+..
T Consensus 53 ~~~lf~Gp~GvGKT~lak~la~~l~~--~~i~~d~s~~~ 89 (315)
T d1r6bx3 53 GSFLFAGPTGVGKTEVTVQLSKALGI--ELLRFDMSEYM 89 (315)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTC--EEEEEEGGGCS
T ss_pred eEEEEECCCcchhHHHHHHHHhhccC--CeeEecccccc
Confidence 34679999999999999999999863 36777755443
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.75 E-value=0.15 Score=50.67 Aligned_cols=28 Identities=29% Similarity=0.415 Sum_probs=23.1
Q ss_pred EEEEEcCCCCcHHHHHHHH-HhccCCCcc
Q 041277 391 TVALVGGSGSGKSTVIALL-QRFYAPLGG 418 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l-~~~~~~~~G 418 (1133)
++.++|.+|+|||||++-+ .+.+.|+-|
T Consensus 8 KilllG~~~vGKTsll~~~~~~~~~pTiG 36 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRILHVVLTSG 36 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence 6889999999999999876 455667766
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=87.62 E-value=0.09 Score=47.59 Aligned_cols=28 Identities=25% Similarity=0.249 Sum_probs=21.2
Q ss_pred eeCCCEEEEEcCCCCCHHHHH-HHHhhhc
Q 041277 1027 IEAGKSTALVGQSGSGKSTII-GLIERFY 1054 (1133)
Q Consensus 1027 I~~Ge~vaIVG~SGSGKSTL~-~LL~R~y 1054 (1133)
+++|+.+-|++|||||||..+ ..+.+..
T Consensus 4 l~~~~~~il~~~tGsGKT~~~~~~~~~~~ 32 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRFLPQILAEC 32 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHH
T ss_pred HHcCCcEEEEcCCCCChhHHHHHHHHHHh
Confidence 467999999999999999655 3444444
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=87.52 E-value=0.14 Score=55.17 Aligned_cols=30 Identities=30% Similarity=0.381 Sum_probs=26.7
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHHhccC
Q 041277 385 TIPAGKTVALVGGSGSGKSTVIALLQRFYA 414 (1133)
Q Consensus 385 ~i~~g~~~~ivG~sGsGKSTll~~l~~~~~ 414 (1133)
.++++..+.+.||+|+||||+.+.|++++.
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 346778999999999999999999999875
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.49 E-value=0.14 Score=48.22 Aligned_cols=21 Identities=24% Similarity=0.523 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 041277 391 TVALVGGSGSGKSTVIALLQR 411 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~ 411 (1133)
++++||.+|+|||||++-+..
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999998764
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=87.48 E-value=0.13 Score=50.06 Aligned_cols=22 Identities=27% Similarity=0.524 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHhcc
Q 041277 392 VALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 392 ~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
+||+|...+|||||++.|.|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEeccCCcHHHHHHHHHhhh
Confidence 7999999999999999998754
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.40 E-value=0.16 Score=48.92 Aligned_cols=29 Identities=28% Similarity=0.386 Sum_probs=24.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccCCCccE
Q 041277 391 TVALVGGSGSGKSTVIALLQRFYAPLGGE 419 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~~~~~~G~ 419 (1133)
++.++|..|+|||||++-+....-|+.|-
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~~ 32 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTGI 32 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCSE
T ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCccE
Confidence 57899999999999999887767777774
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.37 E-value=0.11 Score=51.77 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHhhh
Q 041277 1033 TALVGQSGSGKSTIIGLIERF 1053 (1133)
Q Consensus 1033 vaIVG~SGSGKSTL~~LL~R~ 1053 (1133)
+-+.||+|+||||+++++.+-
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~ 59 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHE 59 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHHHH
Confidence 569999999999999998764
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.32 E-value=0.16 Score=52.03 Aligned_cols=54 Identities=24% Similarity=0.433 Sum_probs=38.6
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCccE-EEECCeecCCCCHHHHhhhceE
Q 041277 385 TIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGE-IILDGVSIDKLQLKWLRSQMGL 441 (1133)
Q Consensus 385 ~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G~-i~~~g~~~~~~~~~~~r~~i~~ 441 (1133)
=++.|.++-+.||+||||||++..++.......|. |+||... .++++.+ +++|.
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~--~~~~e~a-~~~Gv 110 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH--ALDPDYA-KKLGV 110 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC--CCCHHHH-HHHTC
T ss_pred CcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCc--cCCHHHH-HHhCC
Confidence 57899999999999999999987777666555565 5667654 2344443 34553
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.20 E-value=0.14 Score=49.21 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 041277 391 TVALVGGSGSGKSTVIALLQR 411 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~ 411 (1133)
+++|+|.+|+|||||++-+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 489999999999999987663
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=87.18 E-value=0.13 Score=53.82 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHhhh
Q 041277 1031 KSTALVGQSGSGKSTIIGLIERF 1053 (1133)
Q Consensus 1031 e~vaIVG~SGSGKSTL~~LL~R~ 1053 (1133)
=++||||-..+|||||+++|.+-
T Consensus 11 ~kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 11 LKTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHCC
Confidence 46999999999999999999974
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=87.16 E-value=0.13 Score=52.98 Aligned_cols=49 Identities=12% Similarity=0.167 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccC--CCccEEEECCeecCCCCHHHHhhhce
Q 041277 391 TVALVGGSGSGKSTVIALLQRFYA--PLGGEIILDGVSIDKLQLKWLRSQMG 440 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~~~--~~~G~i~~~g~~~~~~~~~~~r~~i~ 440 (1133)
-+||+|+.|||||||+..|+-.-. ...|++. +|..+.+....+..+.++
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~-~~~~~~D~~~~E~~r~~s 58 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVH-EGAATMDFMEQERERGIT 58 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSCC--------------------CCCC
T ss_pred EEEEEeCCCCCHHHHHHHHHHhcCcccccccee-cCceEEeccHHHHhcCCc
Confidence 479999999999999999853211 1234442 333344444444444443
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=87.09 E-value=0.065 Score=52.88 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 041277 391 TVALVGGSGSGKSTVIALLQRF 412 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~ 412 (1133)
-+||+|..++|||||+..|+..
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHHH
Confidence 3799999999999999999754
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=86.97 E-value=0.13 Score=52.13 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=21.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHhhhcC
Q 041277 1031 KSTALVGQSGSGKSTIIGLIERFYD 1055 (1133)
Q Consensus 1031 e~vaIVG~SGSGKSTL~~LL~R~yd 1055 (1133)
..|-+.||+|||||++++.|.+-..
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~~~ 65 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEESN 65 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECcCCCCHHHHHHHHhhccc
Confidence 3577999999999999999997654
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=86.72 E-value=0.16 Score=51.12 Aligned_cols=30 Identities=27% Similarity=0.364 Sum_probs=23.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhccCCCccEEEEC
Q 041277 390 KTVALVGGSGSGKSTVIALLQRFYAPLGGEIILD 423 (1133)
Q Consensus 390 ~~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~~ 423 (1133)
.++||.|+-||||||+.+.|..-+ |-..++
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e~~----g~~~i~ 31 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMSNY----SAVKYQ 31 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS----CEEECC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC----CCeEEc
Confidence 378999999999999999996533 544454
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.70 E-value=0.2 Score=51.19 Aligned_cols=30 Identities=30% Similarity=0.475 Sum_probs=26.5
Q ss_pred eEEeeCCCEEEEEcCCCCcHHHHHHHHHhc
Q 041277 383 CLTIPAGKTVALVGGSGSGKSTVIALLQRF 412 (1133)
Q Consensus 383 ~l~i~~g~~~~ivG~sGsGKSTll~~l~~~ 412 (1133)
=+.+-+||+.+|.|++|+|||||+.-++.-
T Consensus 62 l~pigkGQr~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 62 LAPYAKGGKIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp HSCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred eccccCCCEEEeeCCCCCCHHHHHHHHHHH
Confidence 367889999999999999999998887764
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.52 E-value=0.14 Score=52.88 Aligned_cols=23 Identities=35% Similarity=0.329 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhc
Q 041277 390 KTVALVGGSGSGKSTVIALLQRF 412 (1133)
Q Consensus 390 ~~~~ivG~sGsGKSTll~~l~~~ 412 (1133)
.+|+|+||.++|||||++.|.|.
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~ 55 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGK 55 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTC
T ss_pred EEEEEECCCCCCHHHHHHHHcCC
Confidence 48999999999999999999874
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=86.45 E-value=0.18 Score=51.72 Aligned_cols=29 Identities=31% Similarity=0.461 Sum_probs=23.6
Q ss_pred cccCccEEeeCCCEEEEEcCCCCCHHHHHHHHh
Q 041277 1019 IFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIE 1051 (1133)
Q Consensus 1019 vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~ 1051 (1133)
++.|+ .||+.+-|+|++|+||||++.-|+
T Consensus 22 li~G~----~pg~~~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 22 VLPNM----VAGTVGALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp EETTE----ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred HhCCc----cCCcEEEEEeCCCCCHHHHHHHHH
Confidence 56663 469999999999999999986554
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.43 E-value=0.13 Score=51.23 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhhh
Q 041277 1033 TALVGQSGSGKSTIIGLIERF 1053 (1133)
Q Consensus 1033 vaIVG~SGSGKSTL~~LL~R~ 1053 (1133)
+-+.||+|+||||+++++.+-
T Consensus 38 lLl~Gp~G~GKttl~~~la~~ 58 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALARE 58 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCChhHHHHHHHHH
Confidence 569999999999999999874
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=86.29 E-value=0.21 Score=51.66 Aligned_cols=22 Identities=32% Similarity=0.440 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 041277 391 TVALVGGSGSGKSTVIALLQRF 412 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~ 412 (1133)
.+||||-+-+|||||++.|.+-
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHCC
Confidence 6899999999999999999963
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.25 E-value=0.17 Score=48.92 Aligned_cols=21 Identities=19% Similarity=0.387 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 041277 391 TVALVGGSGSGKSTVIALLQR 411 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~ 411 (1133)
+++++|++|+|||||++-+..
T Consensus 5 KvvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999987654
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=86.20 E-value=0.18 Score=49.02 Aligned_cols=22 Identities=23% Similarity=0.444 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 041277 1032 STALVGQSGSGKSTIIGLIERF 1053 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~ 1053 (1133)
.|||+|.-.+|||||++.|.+.
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~ 28 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGV 28 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEEeccCCcHHHHHHHHHhh
Confidence 3799999999999999999864
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.19 E-value=0.19 Score=51.60 Aligned_cols=30 Identities=20% Similarity=0.327 Sum_probs=24.9
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhhhcC
Q 041277 1026 KIEAGKSTALVGQSGSGKSTIIGLIERFYD 1055 (1133)
Q Consensus 1026 ~I~~Ge~vaIVG~SGSGKSTL~~LL~R~yd 1055 (1133)
-+++...+-+.||+|+|||++++.+++-+.
T Consensus 37 g~~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 37 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCCeEEEECCCCCcchhHHHHHHHHhC
Confidence 455666688999999999999999988543
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=86.05 E-value=0.18 Score=51.54 Aligned_cols=54 Identities=22% Similarity=0.369 Sum_probs=38.0
Q ss_pred EeeCCCEEEEEcCCCCcHHHHHHHHHhccCCCcc-EEEECCeecCCCCHHHHhhhceE
Q 041277 385 TIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGG-EIILDGVSIDKLQLKWLRSQMGL 441 (1133)
Q Consensus 385 ~i~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G-~i~~~g~~~~~~~~~~~r~~i~~ 441 (1133)
=++.|.++-|.||+|||||||...++....-..| -++||... .++++ +.+++|+
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~--~~~~~-~a~~~Gv 107 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH--ALDPV-YARALGV 107 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCHH-HHHHTTC
T ss_pred CccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCc--cCCHH-HHHHhCC
Confidence 4689999999999999999999888876554444 45666653 34444 3344554
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.79 E-value=0.18 Score=48.79 Aligned_cols=28 Identities=32% Similarity=0.496 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHH--hccCCCcc
Q 041277 391 TVALVGGSGSGKSTVIALLQ--RFYAPLGG 418 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~--~~~~~~~G 418 (1133)
++.++|.+|+|||||++-+. -.+.|+-|
T Consensus 4 KivllG~~~vGKTsll~r~~f~~~~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeee
Confidence 57899999999999999873 22467777
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.74 E-value=0.17 Score=52.95 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 041277 391 TVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
.+++||...||||||+++|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999964
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.70 E-value=0.18 Score=50.72 Aligned_cols=25 Identities=32% Similarity=0.599 Sum_probs=22.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhccC
Q 041277 390 KTVALVGGSGSGKSTVIALLQRFYA 414 (1133)
Q Consensus 390 ~~~~ivG~sGsGKSTll~~l~~~~~ 414 (1133)
++++|=|+-||||||+++.|...+.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHh
Confidence 4789999999999999999997654
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=85.69 E-value=0.12 Score=53.08 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 041277 391 TVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
.+.++||+|+||||+++.++..+
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 35667999999999999999875
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=85.69 E-value=0.18 Score=52.95 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 041277 391 TVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
.+++||.-+||||||+++|+|.-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999964
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=85.63 E-value=0.89 Score=43.96 Aligned_cols=106 Identities=10% Similarity=0.158 Sum_probs=0.0
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHHhccCCCcc----EEEECCeecCCCCHHHHhhhceEEecCCCCccccHHHHHhcCCC
Q 041277 387 PAGKTVALVGGSGSGKSTVIALLQRFYAPLGG----EIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKE 462 (1133)
Q Consensus 387 ~~g~~~~ivG~sGsGKSTll~~l~~~~~~~~G----~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~eni~~~~~ 462 (1133)
+.+..+.+.||+|+||||+...+.....-..- -+.++. ...
T Consensus 13 ~~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D~~~i~~-----------------------------------~~~ 57 (198)
T d2gnoa2 13 SEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDP-----------------------------------EGE 57 (198)
T ss_dssp CSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECC-----------------------------------SSS
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHhccccCCCCEEEEeC-----------------------------------CcC
Q ss_pred CCCHHHHHHHHHHhchHHHHHhCCCcccccccCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCcccCCChHHHHHHHHHH
Q 041277 463 DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGQKQRIAIARAIIKAPRILLLDEATSALDSESERVVQEAL 542 (1133)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l 542 (1133)
....+++.+..+.+.. +....+.+|+++|| --.|...+...+.+.|
T Consensus 58 ~I~Id~IR~i~~~~~~---------------------------------~~~~~~~KviIId~-ad~l~~~aqNaLLK~L 103 (198)
T d2gnoa2 58 NIGIDDIRTIKDFLNY---------------------------------SPELYTRKYVIVHD-CERMTQQAANAFLKAL 103 (198)
T ss_dssp CBCHHHHHHHHHHHTS---------------------------------CCSSSSSEEEEETT-GGGBCHHHHHHTHHHH
T ss_pred CCCHHHHHHHHHHHhh---------------------------------CcccCCCEEEEEeC-ccccchhhhhHHHHHH
Q ss_pred HHHhCCCeEEEEecCcchh
Q 041277 543 DKAVVGRTTIIIAHRLSTI 561 (1133)
Q Consensus 543 ~~~~~~~t~i~itH~~~~~ 561 (1133)
.+-.++...|++|++.+.+
T Consensus 104 EEPp~~t~fiLit~~~~~l 122 (198)
T d2gnoa2 104 EEPPEYAVIVLNTRRWHYL 122 (198)
T ss_dssp HSCCTTEEEEEEESCGGGS
T ss_pred hCCCCCceeeeccCChhhC
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=85.31 E-value=0.23 Score=53.35 Aligned_cols=41 Identities=15% Similarity=0.119 Sum_probs=32.1
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCccc
Q 041277 1026 KIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDI 1068 (1133)
Q Consensus 1026 ~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI 1068 (1133)
.++++..+-++||.|+||||+++.|.++..-. -|.+++-|.
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~~~--~i~in~s~~ 190 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLELCGGK--ALNVNLPLD 190 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHCCE--EECCSSCTT
T ss_pred CCCCcCeEEEECCCCCCHHHHHHHHHHHcCCC--EEEEECcch
Confidence 45778889999999999999999999998631 233565554
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=85.25 E-value=0.17 Score=55.96 Aligned_cols=35 Identities=23% Similarity=0.220 Sum_probs=25.9
Q ss_pred CEEEEEcCCCCCHHHHHH-HHhhhcCCCCCeEEECC
Q 041277 1031 KSTALVGQSGSGKSTIIG-LIERFYDPLKGDVKIDD 1065 (1133)
Q Consensus 1031 e~vaIVG~SGSGKSTL~~-LL~R~ydp~~G~I~IdG 1065 (1133)
..+.|+|+||||||++++ ++..+..-..+-|.+|.
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD~ 86 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDP 86 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred ceEEEEeCCCCcHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 458999999999999874 56666655555666664
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=85.18 E-value=0.14 Score=52.64 Aligned_cols=46 Identities=11% Similarity=0.050 Sum_probs=33.4
Q ss_pred cccCccEEeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECC
Q 041277 1019 IFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDD 1065 (1133)
Q Consensus 1019 vL~~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG 1065 (1133)
++ |.=+.|-+||+++|+|++|+|||+|+..+.+-..-+...+-+-+
T Consensus 57 ~I-D~l~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~~~~~~v~V~~~ 102 (276)
T d1fx0a3 57 AI-DAMIPVGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVA 102 (276)
T ss_dssp TT-TTTSCCBTTCBCBEEESSSSSHHHHHHHHHHTCCTTTCEEEEEE
T ss_pred EE-eccccccCCceEeeccCCCCChHHHHHHHHhhhcccCceeeeee
Confidence 44 34468999999999999999999999876655544444433333
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.91 E-value=0.21 Score=50.18 Aligned_cols=25 Identities=28% Similarity=0.534 Sum_probs=22.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHhhhcC
Q 041277 1031 KSTALVGQSGSGKSTIIGLIERFYD 1055 (1133)
Q Consensus 1031 e~vaIVG~SGSGKSTL~~LL~R~yd 1055 (1133)
+.|+|=|.-||||||++++|..-+.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHh
Confidence 4689999999999999999987664
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.88 E-value=0.16 Score=51.38 Aligned_cols=22 Identities=27% Similarity=0.258 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHHHHhhhc
Q 041277 1033 TALVGQSGSGKSTIIGLIERFY 1054 (1133)
Q Consensus 1033 vaIVG~SGSGKSTL~~LL~R~y 1054 (1133)
+-|+||.|+||||+++++++-+
T Consensus 36 lll~Gp~G~GKTt~~~~la~~l 57 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLESI 57 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 6799999999999999998753
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=84.75 E-value=0.21 Score=52.58 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=22.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhccC
Q 041277 390 KTVALVGGSGSGKSTVIALLQRFYA 414 (1133)
Q Consensus 390 ~~~~ivG~sGsGKSTll~~l~~~~~ 414 (1133)
..+.++||+|+|||.|.+.|+..+.
T Consensus 53 ~~~lf~Gp~GvGKT~lak~la~~l~ 77 (315)
T d1r6bx3 53 GSFLFAGPTGVGKTEVTVQLSKALG 77 (315)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCcchhHHHHHHHHhhcc
Confidence 3578999999999999999999864
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=84.51 E-value=0.23 Score=49.38 Aligned_cols=29 Identities=31% Similarity=0.352 Sum_probs=22.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHh-hhcCCCCC
Q 041277 1031 KSTALVGQSGSGKSTIIGLIE-RFYDPLKG 1059 (1133)
Q Consensus 1031 e~vaIVG~SGSGKSTL~~LL~-R~ydp~~G 1059 (1133)
-||-++|.+|+|||||++-+. .=+.|+-|
T Consensus 7 ~KilllG~~~vGKTsll~~~~~~~~~pTiG 36 (221)
T d1azta2 7 HRLLLLGAGESGKSTIVKQMRILHVVLTSG 36 (221)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence 378999999999999987653 33457766
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=84.47 E-value=0.27 Score=49.76 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcC
Q 041277 1032 STALVGQSGSGKSTIIGLIERFYD 1055 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~yd 1055 (1133)
-+-+.||+|+|||++++.|.+-+.
T Consensus 44 giLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred eEEEecCCCCChhHHHHHHHHHcC
Confidence 367999999999999999997664
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=84.31 E-value=0.14 Score=54.59 Aligned_cols=27 Identities=30% Similarity=0.407 Sum_probs=24.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhccCC
Q 041277 389 GKTVALVGGSGSGKSTVIALLQRFYAP 415 (1133)
Q Consensus 389 g~~~~ivG~sGsGKSTll~~l~~~~~~ 415 (1133)
|.-+.|+||.|+||||+++.+.++++|
T Consensus 28 ~h~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 28 IGGVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred CCeEEEECCCCccHHHHHHHHHHhCCC
Confidence 346889999999999999999999976
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=84.18 E-value=0.21 Score=45.25 Aligned_cols=22 Identities=32% Similarity=0.258 Sum_probs=17.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHh
Q 041277 1030 GKSTALVGQSGSGKSTIIGLIE 1051 (1133)
Q Consensus 1030 Ge~vaIVG~SGSGKSTL~~LL~ 1051 (1133)
.+..-|++|||||||+++-.+.
T Consensus 8 ~~~~ll~apTGsGKT~~~~~~~ 29 (136)
T d1a1va1 8 FQVAHLHAPTGSGKSTKVPAAY 29 (136)
T ss_dssp CEEEEEECCTTSCTTTHHHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHH
Confidence 4555679999999999885544
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.15 E-value=0.27 Score=50.15 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcC
Q 041277 1032 STALVGQSGSGKSTIIGLIERFYD 1055 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~yd 1055 (1133)
-+-+.||+|+|||++++.+.+...
T Consensus 40 giLL~GppGtGKT~l~~ala~~~~ 63 (258)
T d1e32a2 40 GILLYGPPGTGKTLIARAVANETG 63 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred eeEEecCCCCCchHHHHHHHHHhC
Confidence 367999999999999999999544
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=84.14 E-value=0.23 Score=51.78 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 041277 391 TVALVGGSGSGKSTVIALLQRF 412 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~ 412 (1133)
.+||||.+.+|||||+++|.+-
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5999999999999999999975
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=84.02 E-value=0.33 Score=50.94 Aligned_cols=38 Identities=21% Similarity=0.345 Sum_probs=28.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc-CCCCCeEEECCcccC
Q 041277 1032 STALVGQSGSGKSTIIGLIERFY-DPLKGDVKIDDRDIR 1069 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~y-dp~~G~I~IdG~dI~ 1069 (1133)
.+-++||||+|||.+++.|.+.. .....-+.+|..+..
T Consensus 55 ~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~~~~~ 93 (315)
T d1qvra3 55 SFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYM 93 (315)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCC
T ss_pred EEEEECCCcchHHHHHHHHHHHhcCCCcceEEEeccccc
Confidence 46799999999999999999964 434456777765443
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=83.63 E-value=0.26 Score=50.80 Aligned_cols=24 Identities=33% Similarity=0.246 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhhh
Q 041277 1030 GKSTALVGQSGSGKSTIIGLIERF 1053 (1133)
Q Consensus 1030 Ge~vaIVG~SGSGKSTL~~LL~R~ 1053 (1133)
...|+|+|..|.|||||++.+.+-
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~~ 67 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALSK 67 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999988654
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=83.61 E-value=0.19 Score=50.46 Aligned_cols=24 Identities=21% Similarity=0.165 Sum_probs=19.2
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHh
Q 041277 1028 EAGKSTALVGQSGSGKSTIIGLIE 1051 (1133)
Q Consensus 1028 ~~Ge~vaIVG~SGSGKSTL~~LL~ 1051 (1133)
-.|+-+.+++|||||||+...+..
T Consensus 56 l~g~~~~i~apTGsGKT~~~~~~~ 79 (237)
T d1gkub1 56 LRKESFAATAPTGVGKTSFGLAMS 79 (237)
T ss_dssp HTTCCEECCCCBTSCSHHHHHHHH
T ss_pred HCCCCEEEEecCCChHHHHHHHHH
Confidence 368889999999999998755443
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=83.54 E-value=0.17 Score=45.71 Aligned_cols=28 Identities=21% Similarity=0.207 Sum_probs=20.9
Q ss_pred eeCCCEEEEEcCCCCcHHHHH-HHHHhcc
Q 041277 386 IPAGKTVALVGGSGSGKSTVI-ALLQRFY 413 (1133)
Q Consensus 386 i~~g~~~~ivG~sGsGKSTll-~~l~~~~ 413 (1133)
+++|+.+.|++|+|||||... ..+....
T Consensus 4 l~~~~~~il~~~tGsGKT~~~~~~~~~~~ 32 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRFLPQILAEC 32 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHH
T ss_pred HHcCCcEEEEcCCCCChhHHHHHHHHHHh
Confidence 468999999999999999544 3444433
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=83.31 E-value=0.26 Score=48.19 Aligned_cols=24 Identities=21% Similarity=0.531 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccC
Q 041277 391 TVALVGGSGSGKSTVIALLQRFYA 414 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~~~ 414 (1133)
-+||+|...+|||||++.|++...
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEEccCCcHHHHHHHHHhhhc
Confidence 479999999999999999987543
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=83.06 E-value=0.26 Score=51.90 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 041277 391 TVALVGGSGSGKSTVIALLQRF 412 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~ 412 (1133)
.+||||.+-+|||||+++|.|-
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred cEeEECCCCCCHHHHHHHHHCC
Confidence 4899999999999999999884
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=82.63 E-value=0.25 Score=51.69 Aligned_cols=29 Identities=24% Similarity=0.379 Sum_probs=23.1
Q ss_pred EEeeCCCEEEEEcCCCCcHHHHHHHHHhcc
Q 041277 384 LTIPAGKTVALVGGSGSGKSTVIALLQRFY 413 (1133)
Q Consensus 384 l~i~~g~~~~ivG~sGsGKSTll~~l~~~~ 413 (1133)
...++| .+.++||+|+|||.|.+.|++..
T Consensus 119 ~~~~~g-~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 119 HRYASG-MVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp EEEESE-EEEEECSSSSCHHHHHHHHHHHH
T ss_pred cccCCc-eEEEECCCCccHHHHHHHHHHHh
Confidence 444554 55668999999999999999875
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=82.32 E-value=0.22 Score=51.05 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhhhc
Q 041277 1033 TALVGQSGSGKSTIIGLIERFY 1054 (1133)
Q Consensus 1033 vaIVG~SGSGKSTL~~LL~R~y 1054 (1133)
+.|+||+|+||||+++.+++-+
T Consensus 49 l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 49 YGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EECTTCCSSSHHHHHHHHHHHH
T ss_pred EEeECCCCCCHHHHHHHHHHHH
Confidence 4567999999999999999764
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=81.84 E-value=0.32 Score=47.89 Aligned_cols=43 Identities=16% Similarity=0.251 Sum_probs=31.2
Q ss_pred hhCCCEEEEeCcccCC-ChHHHHHHHHHHHHHh-CCCeEEEEecC
Q 041277 515 IKAPRILLLDEATSAL-DSESERVVQEALDKAV-VGRTTIIIAHR 557 (1133)
Q Consensus 515 ~~~~~illlDE~ts~l-D~~~~~~i~~~l~~~~-~~~t~i~itH~ 557 (1133)
+.+.+++++||-=.=. +...+..+...+.... .|+.+|+.+.+
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~ 139 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDR 139 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred HhhccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCC
Confidence 5689999999985433 4567778888887764 56777666654
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=81.80 E-value=0.52 Score=49.57 Aligned_cols=32 Identities=22% Similarity=0.158 Sum_probs=25.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccCCCccEEEE
Q 041277 391 TVALVGGSGSGKSTVIALLQRFYAPLGGEIIL 422 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~~~~~~G~i~~ 422 (1133)
.+.|=|+-||||||+++.|...+....+.+.+
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~~~~v~~~ 39 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASGGSPTLYF 39 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGCSSCEEEE
T ss_pred EEEEECCccCCHHHHHHHHHHHhccCCCeEEE
Confidence 57788999999999999999987665444333
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=81.51 E-value=0.48 Score=48.30 Aligned_cols=59 Identities=17% Similarity=0.244 Sum_probs=45.5
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECCcccCCCChhHHhhcccccccccc
Q 041277 1026 KIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPT 1088 (1133)
Q Consensus 1026 ~I~~Ge~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG~dI~~i~l~~LR~~isiV~Qdp~ 1088 (1133)
..++--.+-|.||.++||||++++|.+++ +.-|. +++ .-++..+..+..+--++.+||.
T Consensus 100 ~~~k~n~~~l~G~~~tGKS~f~~~i~~~l-g~~~~--~~~-~~~~f~l~~l~~k~~~~~~e~~ 158 (267)
T d1u0ja_ 100 KFGKRNTIWLFGPATTGKTNIAEAIAHTV-PFYGC--VNW-TNENFPFNDCVDKMVIWWEEGK 158 (267)
T ss_dssp CSTTCCEEEEECSTTSSHHHHHHHHHHHS-SCEEE--CCT-TCSSCTTGGGSSCSEEEECSCC
T ss_pred CCCccEEEEEEcCCCCCHHHHHHHHHHHh-cchhh--ccc-cCCCccccccCCCEEEEEeCCC
Confidence 34667788999999999999999999998 55443 333 3356778888888777788875
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=81.42 E-value=0.38 Score=51.58 Aligned_cols=31 Identities=26% Similarity=0.368 Sum_probs=24.1
Q ss_pred EEEEcCCCCCHHHHHHHHhhhcCCCCCeEEECC
Q 041277 1033 TALVGQSGSGKSTIIGLIERFYDPLKGDVKIDD 1065 (1133)
Q Consensus 1033 vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~IdG 1065 (1133)
+-++||||+|||-|++.|+++.+. .-|.+|-
T Consensus 71 iLfiGPTGvGKTElAk~LA~~~~~--~~ir~D~ 101 (364)
T d1um8a_ 71 ILLIGPTGSGKTLMAQTLAKHLDI--PIAISDA 101 (364)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTC--CEEEEEG
T ss_pred eeeeCCCCccHHHHHHHHHhhccc--ceeehhh
Confidence 458999999999999999998743 2445543
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=81.11 E-value=0.33 Score=53.42 Aligned_cols=35 Identities=20% Similarity=0.257 Sum_probs=24.4
Q ss_pred CEEEEEcCCCCcHHHHHHH-HHhccCCCccEEEECC
Q 041277 390 KTVALVGGSGSGKSTVIAL-LQRFYAPLGGEIILDG 424 (1133)
Q Consensus 390 ~~~~ivG~sGsGKSTll~~-l~~~~~~~~G~i~~~g 424 (1133)
..+.|+|++|||||++++. +...+....+-|.+|.
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD~ 86 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDP 86 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred ceEEEEeCCCCcHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 4689999999999998864 4444544445555553
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.11 E-value=0.36 Score=46.41 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 041277 1032 STALVGQSGSGKSTIIGLIERF 1053 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~ 1053 (1133)
||.++|.+|+|||||++-+..-
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~~ 25 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRII 25 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999877544
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=80.97 E-value=0.28 Score=50.47 Aligned_cols=30 Identities=20% Similarity=0.277 Sum_probs=25.5
Q ss_pred CccEEeeCCCEEEEEcCCCCCHHHHHHHHh
Q 041277 1022 GFSIKIEAGKSTALVGQSGSGKSTIIGLIE 1051 (1133)
Q Consensus 1022 ~isl~I~~Ge~vaIVG~SGSGKSTL~~LL~ 1051 (1133)
|.=+.+-+||+++|+|++|+|||||+.-+.
T Consensus 60 D~l~pig~GQr~~If~~~g~GKt~ll~~~~ 89 (285)
T d2jdia3 60 DSLVPIGRGQRELIIGDRQTGKTSIAIDTI 89 (285)
T ss_dssp HHHSCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred ecccCccCCCEEEeecCCCCChHHHHHHHH
Confidence 344789999999999999999999976554
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=80.56 E-value=0.6 Score=49.10 Aligned_cols=32 Identities=22% Similarity=0.083 Sum_probs=26.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcCCCCCeEEE
Q 041277 1032 STALVGQSGSGKSTIIGLIERFYDPLKGDVKI 1063 (1133)
Q Consensus 1032 ~vaIVG~SGSGKSTL~~LL~R~ydp~~G~I~I 1063 (1133)
+|.|=|.-||||||+++.|..-+....+-+.+
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~~~~v~~~ 39 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASGGSPTLYF 39 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGCSSCEEEE
T ss_pred EEEEECCccCCHHHHHHHHHHHhccCCCeEEE
Confidence 57889999999999999999988765544444
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=80.49 E-value=0.4 Score=49.32 Aligned_cols=24 Identities=29% Similarity=0.271 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhc
Q 041277 389 GKTVALVGGSGSGKSTVIALLQRF 412 (1133)
Q Consensus 389 g~~~~ivG~sGsGKSTll~~l~~~ 412 (1133)
..+++|+|..|.|||||++.+..-
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~~ 67 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALSK 67 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999998764
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=80.41 E-value=0.19 Score=49.17 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=17.0
Q ss_pred eCCCEEEEEcCCCCCHHHHH
Q 041277 1028 EAGKSTALVGQSGSGKSTII 1047 (1133)
Q Consensus 1028 ~~Ge~vaIVG~SGSGKSTL~ 1047 (1133)
..|+.+-+++|||||||+++
T Consensus 38 ~~~~~~il~apTGsGKT~~a 57 (202)
T d2p6ra3 38 FSGKNLLLAMPTAAGKTLLA 57 (202)
T ss_dssp TTCSCEEEECSSHHHHHHHH
T ss_pred HcCCCEEEEcCCCCchhHHH
Confidence 45777889999999999875
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=80.28 E-value=0.35 Score=48.00 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 041277 391 TVALVGGSGSGKSTVIALLQRF 412 (1133)
Q Consensus 391 ~~~ivG~sGsGKSTll~~l~~~ 412 (1133)
++.|.|.-|||||||++-+++.
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 5789999999999999998874
|