Citrus Sinensis ID: 041280

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-----
Protein Sequence
MTKLTSASICKYVWKIENFSKLEAKFYESEVFVAGDQKWKIRLYPKGQGQRTGSHLSMFLALADSSTVTRDFKICVRYTLRIRDQLQSKHNDKIARTWIRPSIGARGWLQFVELSYLNKASNGLLVHDVCIVEAEVSVLGISKAL
Secondary Structure (PSIPRED)
cEEcccccccEEEEEEcccccccccEEEcccEEEcccEEEEEEEccccccccccEEEEEEEEccccccccccEEEEEEEEEEEcccccccEEEEEEEEEccccccccccccccccccccccccEEEccEEEEEEEEEEEEEEccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEEEEcccccccccEcccEEEEcccEEEEEEEEcccccccccEEEEEEEEccccccccccEEEEEEEEEEEEcccccEEEEEEEEEEccccccccccccccHHHHccccccEEEccEEEEEEEEEEEEEcccc
Coil and Loop (DISEMBL)
MTKLTSASICKYVWKIENFSKLEAKFYesevfvagdqkwkirlypkgqgqrtgsHLSMFLALAdsstvtrdFKICVRYTLRIRDQLQSKHNDKIartwirpsigargwLQFVELSYLNkasngllvHDVCIVEAEVSVLGISKAL
Flexible Loop (DISEMBL)
mtkltsasickYVWKIENFSKLEAKFYESEVFVAGDQKWKIRLYPKGQGQRTGSHLSMFLALADSSTVTRDFKICVRYTlrirdqlqskhndkiartwirpsiGARGWLQFVELSYLNKASNGLLVHDVCIVEAEVSVLGISKAL
Low Complexity Region (SEG)
MTKLTSASICKYVWKIENFSKLEAKFYESEVFVAGDQKWKIRLYPKGQGQRTGSHLSMFLALADSSTVTRDFKICVRYTLRIRDQLQSKHNDKIARTWIRPSIGARGWLQFVELSYLNKASNGLLVHDVCIVEAEVSVLGISKAL
Disordered region (IsUnstruct)
******ASICKYVWKIENFSKLEAKFYESEVFVAGDQKWKIRLYPKGQGQRTGSHLSMFLALADSSTVTRDFKICVRYTLRIRDQLQSKHNDKIARTWIRPSIGARGWLQFVELSYLNKASNGLLVHDVCIVEAEVSVLGI****
Disordered Region (DISOPRED)
*******SICKYVWKIENFSKLEAKFYESEVFVAGDQKWKIRLYPKGQGQRTGSHLSMFLALADSSTVTRDFKICVRYTLRIRDQLQ****DKIARTWIRPSIGARGWLQFVELSYLNKASNGLLVHDVCIVEAEVSVLGISKA*
Disordered Region (DISEMBL)
MTKLTSASICKYVWKIENFSKLEAKFYESEVFVAGDQKWKIRLYPKGQGQRTGSHLSMFLALADSSTVTRDFKICVRYTLRIRDQLQSKHNDKIARTWIRPSIGARGWLQFVELSYLNKASNGLLVHDVCIVEAEVSVLGISKAL
Disordered Region (DISPRO)
****TSASICKYVWKIENFSKLEAKFYESEVFVAGDQKWKIRLYPKGQGQRTGSHLSMFLALADSSTVTRDFKICVRYTLRIRDQLQSKHNDKIARTWIRPSIGARGWLQFVELSYLNKASNGLLVHDVCIVEAEVSVLGISKAL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTKLTSASICKYVWKIENFSKLEAKFYESEVFVAGDQKWKIRLYPKGQGQRTGSHLSMFLALADSSTVTRDFKICVRYTLRIRDQLQSKHNDKIARTWIRPSIGARGWLQFVELSYLNKASNGLLVHDVCIVEAEVSVLGISKAL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	145	2.2.26 [Sep-21-2011]
Q9FPT1	1116	Ubiquitin carboxyl-termin	no	no	0.841	0.109	0.333	6e-15
Q84WU2	1115	Ubiquitin carboxyl-termin	no	no	0.841	0.109	0.318	8e-14
Q8RY18	1055	MATH domain-containing pr	no	no	0.841	0.115	0.310	4e-09
P41886	418	BTB and MATH domain-conta	yes	no	0.924	0.320	0.270	6e-06
Q9UTT1	1129	Ubiquitin carboxyl-termin	yes	no	0.372	0.047	0.438	0.0003
P34568	451	BTB and MATH domain-conta	no	no	0.841	0.270	0.290	0.0003

>sp|Q9FPT1|UBP12_ARATH Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 PE=1 SV=2

 Score = 79.7 bits (195), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 44/132 (33%), Positives = 75/132 (56%), Gaps = 10/132 (7%)

Query: 11  KYVWKIENFSKLEAKFYESEVFVAGDQKWKIRLYPKGQGQRTGSHLSMFLALADSSTVTR 70
           K+ W I NFS+   + + S+VFV G  KW+I ++PKG       HLSM+L ++D++++  
Sbjct: 56  KFTWTIPNFSRQNTRKHYSDVFVVGGYKWRILIFPKGNNV---DHLSMYLDVSDAASLPY 112

Query: 71  DFKICVRYTLRIRDQLQSKHNDKIARTWIRPSIGAR----GWLQFVELSYLNKASNGLLV 126
            +    +++L + +Q+ +++     R   +    AR    G+  F+ LS L   S G LV
Sbjct: 113 GWSRYAQFSLAVVNQIHTRYT---VRKETQHQFNARESDWGFTSFMPLSELYDPSRGYLV 169

Query: 127 HDVCIVEAEVSV 138
           +D  +VEAEV+V
Sbjct: 170 NDTVLVEAEVAV 181

Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2

>sp|Q84WU2|UBP13_ARATH Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana GN=UBP13 PE=1 SV=1

 Score = 75.9 bits (185), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 42/132 (31%), Positives = 76/132 (57%), Gaps = 10/132 (7%)

Query: 11  KYVWKIENFSKLEAKFYESEVFVAGDQKWKIRLYPKGQGQRTGSHLSMFLALADSSTVTR 70
           K+ W I  F++L  + + S+VFV G  KW+I ++PKG       HLSM+L +AD++ +  
Sbjct: 55  KFTWTIPMFTRLNTRKHYSDVFVVGGYKWRILIFPKGNNV---DHLSMYLDVADAANLPY 111

Query: 71  DFKICVRYTLRIRDQLQSKHNDKIARTWIRPSIGAR----GWLQFVELSYLNKASNGLLV 126
            +    +++L + +Q+ ++++    R   +    AR    G+  F+ LS L + + G LV
Sbjct: 112 GWSRYSQFSLAVVNQVNNRYS---IRKETQHQFNARESDWGFTSFMPLSELYEPTRGYLV 168

Query: 127 HDVCIVEAEVSV 138
           +D  ++EAEV+V
Sbjct: 169 NDTVLIEAEVAV 180

Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q8RY18|Y5436_ARATH MATH domain-containing protein At5g43560 OS=Arabidopsis thaliana GN=At5g43560 PE=1 SV=1

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 68/132 (51%), Gaps = 10/132 (7%)

Query: 11  KYVWKIENFSKLEAKFYESEVFVAGDQKWKIRLYPKGQGQRTGSHLSMFLALADSSTVTR 70
           K  W IE FS +  +    +VF  G  KW I +YP  QG    +HLS+FL +A    +  
Sbjct: 70  KNTWTIEKFSDINKRELRGDVFEVGGYKWYILIYP--QGCDVCNHLSLFLCVAHHEKLLP 127

Query: 71  DFKICVRYTLRI--RDQLQSKHNDKIARTWIRPSIGARGWLQFVELSYLNKASNGLLVHD 128
            +    ++T+ +  +D  +SKH+D + R W +      GW +F+EL  L +   G +   
Sbjct: 128 GWSHFAQFTIAVSNKDPKKSKHSDTLHRFWKKEH--DWGWKKFIELPKLKE---GFIDDS 182

Query: 129 VCI-VEAEVSVL 139
            C+ ++A+V V+
Sbjct: 183 GCLTIKAQVQVI 194

Arabidopsis thaliana (taxid: 3702)

>sp|P41886|BAT41_CAEEL BTB and MATH domain-containing protein 41 OS=Caenorhabditis elegans GN=bath-41 PE=1 SV=1

 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 10/144 (6%)

Query: 2   TKLTSASICKYVWKIENFS-KLE----AKFYESEVFVAGDQKWKIRLYPKGQGQRTGSHL 56
           T +   S   Y W +E F+ +LE    A+F  +  F  GD ++ ++L+P G+ + T  +L
Sbjct: 39  TVMNERSFTNY-WSVERFTVQLELHNPAEFMLAPKFGDGDYEFVMKLFPNGKDEETAGYL 97

Query: 57  SMFLALADSSTVTRDFKICVRYTLRIRDQLQSKHNDKIARTWIRPSIGARGWLQFVELSY 116
           S+FL +         F+  V +T+   D  +S H +K   T  R  I      +F  L  
Sbjct: 98  SLFLLINKCPNPRLRFR--VSFTVETADGPRSCHLNKNLVTINRSGIVTAS--KFFSLDI 153

Query: 117 LNKASNGLLVHDVCIVEAEVSVLG 140
           L  A N  + +D+  +  E+++ G
Sbjct: 154 LRSAMNVYIPNDILTIGCELTIFG 177

Probable substrate-specific adapter of an E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.

Caenorhabditis elegans (taxid: 6239)

>sp|Q9UTT1|UBP21_SCHPO Ubiquitin carboxyl-terminal hydrolase 21 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ubp21 PE=3 SV=2

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 4  LTSASICKYVWKIENFSKLEAKFYESEVFVAGDQKWKIRLYPKGQGQRTGSHLSMFL 60
          L  A+   Y W ++NFS LE K Y S +F AG   W+I L+PKG  Q    + S+FL
Sbjct: 46 LEEAAHASYSWVVKNFSTLEDKTY-SPLFKAGHTTWRIVLFPKGCNQ--TEYASVFL 99

Involved in regulating the steady-state levels of proteins including prp4.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|P34568|BAT43_CAEEL BTB and MATH domain-containing protein 43 OS=Caenorhabditis elegans GN=bath-43 PE=3 SV=2

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 66/141 (46%), Gaps = 19/141 (13%)

Query: 11  KYVWKIENFSKLEAKFYE---SEVFVAG--DQ-KWKIRLYPKGQGQRTGSHLSMFLAL-- 62
            Y+W I NFS    +  E   S  F AG  D+ KW +R+ PKG  + +  +LS++L L  
Sbjct: 97  NYMWTINNFSFCREEMGEVLKSSTFSAGCNDKLKWCLRINPKGLDEESRDYLSLYLLLVQ 156

Query: 63  ADSSTVTRDFKICVRYTLRIRDQ-LQSKHNDKI--ARTWIRPSIGARGWLQFVELSYLNK 119
            + S V   FK  +    R   + ++S+   +    + W        G+ +F+   +L  
Sbjct: 157 CNKSEVRAKFKFSILNAKREETKAMESQRAYRFVQGKDW--------GFKKFIRRDFLLD 208

Query: 120 ASNGLLVHDVCIVEAEVSVLG 140
            +NGLL  D   +  EVSV+ 
Sbjct: 209 EANGLLPGDRLSIFCEVSVVA 229

In complex with a cullin, may act in ubiquitination and proteasomal degradation processes.

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	145
297830352	309	hypothetical protein ARALYDRAFT_479214 [	0.855	0.401	0.455	9e-33
18401489	309	TRAF-like family protein [Arabidopsis th	0.855	0.401	0.455	3e-32
21537273	309	unknown [Arabidopsis thaliana]	0.855	0.401	0.455	3e-32
11994555	304	unnamed protein product [Arabidopsis tha	0.855	0.407	0.455	3e-32
255556544	455	nucleic acid binding protein, putative [	0.889	0.283	0.475	2e-31
449441502	316	PREDICTED: BTB/POZ and MATH domain-conta	0.944	0.433	0.455	3e-29
449522688	316	PREDICTED: BTB/POZ and MATH domain-conta	0.944	0.433	0.455	5e-29
224100507	249	predicted protein [Populus trichocarpa]	0.972	0.566	0.442	8e-24
224101481	292	predicted protein [Populus trichocarpa]	0.986	0.489	0.414	1e-23
356519881	310	PREDICTED: uncharacterized protein LOC10	0.944	0.441	0.406	1e-23

>gi|297830352|ref|XP_002883058.1| hypothetical protein ARALYDRAFT_479214 [Arabidopsis lyrata subsp. lyrata] gi|297328898|gb|EFH59317.1| hypothetical protein ARALYDRAFT_479214 [Arabidopsis lyrata subsp. lyrata]

 Score =  144 bits (364), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 66/145 (45%), Positives = 96/145 (66%)

Query: 1   MTKLTSASICKYVWKIENFSKLEAKFYESEVFVAGDQKWKIRLYPKGQGQRTGSHLSMFL 60
           ++ +  A+  K+VWKIENFSKL+ + Y+S  F AGD+KWK+R YP G  Q TG+HLS++L
Sbjct: 165 LSMIKDATSSKHVWKIENFSKLDKESYDSNAFFAGDRKWKVRFYPTGTKQGTGTHLSIYL 224

Query: 61  ALADSSTVTRDFKICVRYTLRIRDQLQSKHNDKIARTWIRPSIGARGWLQFVELSYLNKA 120
            L D  T++   KI V +T+RI DQLQ +H       W   S    GW+++V + Y  + 
Sbjct: 225 TLVDPETISDGTKIFVEFTIRIFDQLQGRHIAGKVTKWFSRSSSEHGWVKYVSMVYFTQP 284

Query: 121 SNGLLVHDVCIVEAEVSVLGISKAL 145
           ++GLL+ DVC+VEA+V V GI+ A+
Sbjct: 285 NSGLLLKDVCLVEADVCVHGITSAI 309

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18401489|ref|NP_566576.1| TRAF-like family protein [Arabidopsis thaliana] gi|332642426|gb|AEE75947.1| TRAF-like family protein [Arabidopsis thaliana]

 Score =  143 bits (360), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 66/145 (45%), Positives = 95/145 (65%)

Query: 1   MTKLTSASICKYVWKIENFSKLEAKFYESEVFVAGDQKWKIRLYPKGQGQRTGSHLSMFL 60
           ++ +  A+  K+VWKIENFSKL+ + Y+S  F AGD+KWKI  YP G  Q TG+HLS++L
Sbjct: 165 LSMIKDATSSKHVWKIENFSKLDKESYDSNAFFAGDRKWKIEFYPTGTKQGTGTHLSIYL 224

Query: 61  ALADSSTVTRDFKICVRYTLRIRDQLQSKHNDKIARTWIRPSIGARGWLQFVELSYLNKA 120
            L D  T++   KI V +T+RI DQLQ +H       W   S    GW+++V + Y  + 
Sbjct: 225 TLVDPETISDGTKIFVEFTIRIFDQLQGRHIAGKVTKWFSRSSSEHGWVKYVSMVYFTQP 284

Query: 121 SNGLLVHDVCIVEAEVSVLGISKAL 145
           ++GLL+ DVC+VEA+V V GI+ A+
Sbjct: 285 NSGLLLKDVCLVEADVCVHGITSAI 309

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21537273|gb|AAM61614.1| unknown [Arabidopsis thaliana]

 Score =  143 bits (360), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 66/145 (45%), Positives = 95/145 (65%)

Query: 1   MTKLTSASICKYVWKIENFSKLEAKFYESEVFVAGDQKWKIRLYPKGQGQRTGSHLSMFL 60
           ++ +  A+  K+VWKIENFSKL+ + Y+S  F AGD+KWKI  YP G  Q TG+HLS++L
Sbjct: 165 LSMIKDATSSKHVWKIENFSKLDKESYDSNAFFAGDRKWKIEFYPTGTKQGTGTHLSIYL 224

Query: 61  ALADSSTVTRDFKICVRYTLRIRDQLQSKHNDKIARTWIRPSIGARGWLQFVELSYLNKA 120
            L D  T++   KI V +T+RI DQLQ +H       W   S    GW+++V + Y  + 
Sbjct: 225 TLVDPETISDGTKIFVEFTIRIFDQLQGRHIAGKVTKWFSRSSSEHGWVKYVSMVYFTQP 284

Query: 121 SNGLLVHDVCIVEAEVSVLGISKAL 145
           ++GLL+ DVC+VEA+V V GI+ A+
Sbjct: 285 NSGLLLKDVCLVEADVCVHGITSAI 309

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|11994555|dbj|BAB02742.1| unnamed protein product [Arabidopsis thaliana]

 Score =  143 bits (360), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 66/145 (45%), Positives = 95/145 (65%)

Query: 1   MTKLTSASICKYVWKIENFSKLEAKFYESEVFVAGDQKWKIRLYPKGQGQRTGSHLSMFL 60
           ++ +  A+  K+VWKIENFSKL+ + Y+S  F AGD+KWKI  YP G  Q TG+HLS++L
Sbjct: 160 LSMIKDATSSKHVWKIENFSKLDKESYDSNAFFAGDRKWKIEFYPTGTKQGTGTHLSIYL 219

Query: 61  ALADSSTVTRDFKICVRYTLRIRDQLQSKHNDKIARTWIRPSIGARGWLQFVELSYLNKA 120
            L D  T++   KI V +T+RI DQLQ +H       W   S    GW+++V + Y  + 
Sbjct: 220 TLVDPETISDGTKIFVEFTIRIFDQLQGRHIAGKVTKWFSRSSSEHGWVKYVSMVYFTQP 279

Query: 121 SNGLLVHDVCIVEAEVSVLGISKAL 145
           ++GLL+ DVC+VEA+V V GI+ A+
Sbjct: 280 NSGLLLKDVCLVEADVCVHGITSAI 304

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556544|ref|XP_002519306.1| nucleic acid binding protein, putative [Ricinus communis] gi|223541621|gb|EEF43170.1| nucleic acid binding protein, putative [Ricinus communis]

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 69/145 (47%), Positives = 95/145 (65%)

Query: 1   MTKLTSASICKYVWKIENFSKLEAKFYESEVFVAGDQKWKIRLYPKGQGQRTGSHLSMFL 60
           ++ + S+S  K +W+ ENFSKL+A+  +S+ FVAGDQ+WKI+LYPKG+G  +G+HLS+FL
Sbjct: 311 LSMIKSSSTSKNLWRFENFSKLDAECNDSKTFVAGDQRWKIQLYPKGKGLGSGTHLSLFL 370

Query: 61  ALADSSTVTRDFKICVRYTLRIRDQLQSKHNDKIARTWIRPSIGARGWLQFVELSYLNKA 120
           ALAD + +T  FKI   +TLRI DQ +  H    A  W   S    GW +F  L  L  +
Sbjct: 371 ALADLTAITPGFKILADFTLRILDQSRGSHLFGKANFWFSASSSVCGWSRFYPLDQLYAS 430

Query: 121 SNGLLVHDVCIVEAEVSVLGISKAL 145
           SN  L  D C+ EAE++VLGI+  L
Sbjct: 431 SNAYLFKDTCLGEAEITVLGITDEL 455

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441502|ref|XP_004138521.1| PREDICTED: BTB/POZ and MATH domain-containing protein 3-like [Cucumis sativus]

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 66/145 (45%), Positives = 92/145 (63%)

Query: 1   MTKLTSASICKYVWKIENFSKLEAKFYESEVFVAGDQKWKIRLYPKGQGQRTGSHLSMFL 60
           ++ + S    K+VWKI+NFSKL+A+ YES++F AGD+KWKIR+YPKG G   GSHLS +L
Sbjct: 171 LSMIKSPVTYKHVWKIDNFSKLDAESYESKIFNAGDKKWKIRVYPKGHGSGEGSHLSPYL 230

Query: 61  ALADSSTVTRDFKICVRYTLRIRDQLQSKHNDKIARTWIRPSIGARGWLQFVELSYLNKA 120
            LAD + +    KI    TLR++DQ+ SKH+      W   S    G  +F+ L    + 
Sbjct: 231 ELADPAALHPATKIYAEVTLRLQDQIYSKHHSGKVSYWFSASNPEVGGPRFILLDNFKQP 290

Query: 121 SNGLLVHDVCIVEAEVSVLGISKAL 145
           + G LV D  IVEAEVS++G++ A 
Sbjct: 291 NIGFLVKDAFIVEAEVSIIGVANAF 315

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449522688|ref|XP_004168358.1| PREDICTED: BTB/POZ and MATH domain-containing protein 3-like [Cucumis sativus]

 Score =  132 bits (332), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 66/145 (45%), Positives = 92/145 (63%)

Query: 1   MTKLTSASICKYVWKIENFSKLEAKFYESEVFVAGDQKWKIRLYPKGQGQRTGSHLSMFL 60
           ++ + S    K+VWKI+NFSKL+A+ YES++F AGD+KWKIR+YPKG G   GSHLS +L
Sbjct: 171 LSMIKSPVTYKHVWKIDNFSKLDAESYESKIFNAGDKKWKIRVYPKGHGSGEGSHLSPYL 230

Query: 61  ALADSSTVTRDFKICVRYTLRIRDQLQSKHNDKIARTWIRPSIGARGWLQFVELSYLNKA 120
            LAD + +    KI    TLR++DQ+ SKH+      W   S    G  +F+ L    + 
Sbjct: 231 ELADPAALHPATKIYAEVTLRLQDQIYSKHHSGKVSYWFSASNPEVGGPRFILLDNFKQP 290

Query: 121 SNGLLVHDVCIVEAEVSVLGISKAL 145
           + G LV D  IVEAEV+V+G++ A 
Sbjct: 291 NIGFLVKDAFIVEAEVNVIGVANAF 315

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100507|ref|XP_002311903.1| predicted protein [Populus trichocarpa] gi|222851723|gb|EEE89270.1| predicted protein [Populus trichocarpa]

 Score =  115 bits (287), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 65/147 (44%), Positives = 91/147 (61%), Gaps = 6/147 (4%)

Query: 1   MTKLTSASICKYVWKIENFSKLEAKFYESEVFVAGDQKWKIRLYPKGQGQRTGSHLSMFL 60
           M K  +AS  KY WKI +FSKL+ K  ES++F  GD +WKI LYPKG+G   G+HLS++L
Sbjct: 107 MKKDPTAS--KYTWKIVDFSKLDEKRQESQIFSTGDHQWKIVLYPKGKGPGMGTHLSLYL 164

Query: 61  ALADSSTVTRDFKICVRYTLRIRDQLQSKHNDKI--ARTWIRPSIGARGWLQFVELSYLN 118
           AL D +T+    ++   YTLR+ DQL  +  D    A++W   S    GW ++  LS L 
Sbjct: 165 AL-DLATLPAGCRVYAEYTLRLVDQLYDRKFDMYGKAKSWFGASSSENGWSRYGLLS-LY 222

Query: 119 KASNGLLVHDVCIVEAEVSVLGISKAL 145
           +++N L   D+C++EAEV VLGI    
Sbjct: 223 QSNNYLFAKDICMIEAEVIVLGIGSPF 249

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101481|ref|XP_002312298.1| predicted protein [Populus trichocarpa] gi|222852118|gb|EEE89665.1| predicted protein [Populus trichocarpa]

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 61/147 (41%), Positives = 91/147 (61%), Gaps = 4/147 (2%)

Query: 1   MTKLTSASICKYVWKIENFSKLEAKFYESEVFVAGDQKWKIRLYPKGQGQRTGSHLSMFL 60
           M K  +A+  K+ WKIENF KL+ K  ES+ F +  +KWKI LYPKG+    G+HLS++L
Sbjct: 148 MIKQPTAAF-KHTWKIENFLKLDEKRQESQTFSSASEKWKILLYPKGKDFGMGTHLSLYL 206

Query: 61  ALADSSTVTRDFKICVRYTLRIRDQLQSKHNDKIART--WIRPSIGARGWLQFVELSYLN 118
           A+ D  T+    ++   YTLRI +Q++ +  D  A+   W   S    GW ++V L Y+ 
Sbjct: 207 AV-DLETLPAGCRLYADYTLRIVNQVKDRKLDLSAKAKHWFGASRSESGWTRYVSLDYIY 265

Query: 119 KASNGLLVHDVCIVEAEVSVLGISKAL 145
           + +N  ++ D+CI+EAEV+VLGIS   
Sbjct: 266 QPNNAYVIKDICIIEAEVNVLGISSPF 292

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519881|ref|XP_003528597.1| PREDICTED: uncharacterized protein LOC100779090 [Glycine max]

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 59/145 (40%), Positives = 90/145 (62%)

Query: 1   MTKLTSASICKYVWKIENFSKLEAKFYESEVFVAGDQKWKIRLYPKGQGQRTGSHLSMFL 60
           +  +  A + K++++ +N SKL+ + Y+S+ F AG+ KWKI+LYPKG+G   G++LS++L
Sbjct: 165 LVMMKEAILYKHLYEFDNLSKLDLECYDSKPFNAGNFKWKIKLYPKGKGAELGNYLSLYL 224

Query: 61  ALADSSTVTRDFKICVRYTLRIRDQLQSKHNDKIARTWIRPSIGARGWLQFVELSYLNKA 120
           ALAD S ++   KI  + TLRI DQ Q+KH+   A  W   S    G   F+ ++     
Sbjct: 225 ALADPSALSPCSKIYAQITLRILDQKQAKHHFGKANYWFSASSHENGAAIFMPINNFTNQ 284

Query: 121 SNGLLVHDVCIVEAEVSVLGISKAL 145
           + G +V D C VEAEV +LG+  AL
Sbjct: 285 NFGYVVKDSCFVEAEVIILGVVDAL 309

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	145
TAIR|locus:2089045	309	AT3G17380 "AT3G17380" [Arabido	0.993	0.466	0.458	1.8e-32
TAIR|locus:2197495	268	AT1G31390 "AT1G31390" [Arabido	0.896	0.485	0.338	2.3e-16
TAIR|locus:2098318	370	AT3G28220 "AT3G28220" [Arabido	0.827	0.324	0.354	5e-16
TAIR|locus:2026745	231	AT1G69660 "AT1G69660" [Arabido	0.903	0.567	0.323	1.6e-15
TAIR|locus:2075321	291	AT3G46190 "AT3G46190" [Arabido	0.841	0.419	0.343	2e-15
TAIR|locus:2085445	330	AT3G58210 "AT3G58210" [Arabido	0.868	0.381	0.338	1.2e-14
TAIR|locus:2026751	294	AT1G69650 "AT1G69650" [Arabido	0.903	0.445	0.328	1.4e-14
TAIR|locus:2059364	416	AT2G32870 "AT2G32870" [Arabido	0.931	0.324	0.307	2.6e-14
TAIR|locus:2092344	379	AT3G20370 "AT3G20370" [Arabido	0.910	0.348	0.328	9.1e-14
TAIR|locus:2059354	318	AT2G32880 "AT2G32880" [Arabido	0.910	0.415	0.298	1.4e-13

TAIR|locus:2089045 AT3G17380 "AT3G17380" [Arabidopsis thaliana (taxid:3702)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 67/146 (45%), Positives = 98/146 (67%)

Query:     1 MTKLTSASICKYVWKIENFSKLEAKFYESEVFVAGDQKWKIRLYPKGQGQRTGSHLSMFL 60
             ++ +  A+  K+VWKIENFSKL+ + Y+S  F AGD+KWKI  YP G  Q TG+HLS++L
Sbjct:   165 LSMIKDATSSKHVWKIENFSKLDKESYDSNAFFAGDRKWKIEFYPTGTKQGTGTHLSIYL 224

Query:    61 ALADSSTVTRDFKICVRYTLRIRDQLQSKH-NDKIARTWIRPSIGARGWLQFVELSYLNK 119
              L D  T++   KI V +T+RI DQLQ +H   K+ + W   S    GW+++V + Y  +
Sbjct:   225 TLVDPETISDGTKIFVEFTIRIFDQLQGRHIAGKVTK-WFSRSSSEHGWVKYVSMVYFTQ 283

Query:   120 ASNGLLVHDVCIVEAEVSVLGISKAL 145
              ++GLL+ DVC+VEA+V V GI+ A+
Sbjct:   284 PNSGLLLKDVCLVEADVCVHGITSAI 309

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2197495 AT1G31390 "AT1G31390" [Arabidopsis thaliana (taxid:3702)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 45/133 (33%), Positives = 77/133 (57%)

Query:    11 KYVWKIENFSKLEAKFYESEVFVAGDQKWKIRLYPKGQGQRTGSHLSMFLALADSSTVTR 70
             K  W I+NFS ++++  +S++FV GD KW +  YPKG G+ T   LS++L +AD  ++  
Sbjct:     8 KITWTIKNFSFVQSQAIDSDIFVVGDSKWHLVAYPKGNGESTNKCLSLYLNVADFQSLPN 67

Query:    71 DFKICVRYTLRIRDQLQSKHNDK-IARTWIRPSIGARGWLQFVELSYLNKASNGLLVH-D 128
              +K  ++Y L + +Q+  K +++ + + W   +    G+   + LS L   + G LV+ D
Sbjct:    68 GWKRHIKYRLTVVNQMSEKLSEQEVIQGWFYKNFHISGFQTMLPLSKLLDKNGGFLVNGD 127

Query:   129 VCIVEAEVSVLGI 141
             V IV  EV VL +
Sbjct:   128 VKIV-VEVGVLEV 139

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2098318 AT3G28220 "AT3G28220" [Arabidopsis thaliana (taxid:3702)]

 Score = 204 (76.9 bits), Expect = 5.0e-16, P = 5.0e-16
 Identities = 44/124 (35%), Positives = 68/124 (54%)

Query:    12 YVWKIENFSKLEAKFYESEVFVAGDQKWKIRLYPKGQGQRTGSHLSMFLALADSSTVTRD 71
             Y W + NFS LE ++Y S+ FV G + W +++YP G G+  G+ LS+++   D       
Sbjct:   239 YKWTLPNFSSLEKQYYVSDKFVIGGRSWALKVYPSGDGEGQGNSLSLYVVAVDVKPYD-- 296

Query:    72 FKICVRYTLRIRDQLQSKHNDKIARTWIRPSIGARGWLQFVELSYLNKASNGLLVHDVCI 131
              KI ++  LRI +Q  SKH +K   +W      + G+ +FV  + L   S GLLV+D   
Sbjct:   297 -KIYLKAKLRIINQRDSKHMEKKVESW-SDQANSWGFQKFVPFADLKDTSKGLLVNDTLK 354

Query:   132 VEAE 135
             +E E
Sbjct:   355 MEIE 358

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0031540 "regulation of anthocyanin biosynthetic process" evidence=RCA

TAIR|locus:2026745 AT1G69660 "AT1G69660" [Arabidopsis thaliana (taxid:3702)]

 Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 43/133 (32%), Positives = 71/133 (53%)

Query:    11 KYVWKIENFSKLEAKFYESEVFVAGDQKWKIRLYPKGQGQRTGSHLSMFLALADSSTVTR 70
             K+ W ++NFS+L+   Y S  +  G ++W ++LYPKG  +  G +LS+++ LADS T+  
Sbjct:    96 KFSWNLKNFSELKEDVYTSNKYPMGGKEWVLKLYPKGNSRADGKYLSLYVHLADSETLKS 155

Query:    71 DFKICVRYTLRIRDQLQSKHNDKIARTWIRPSIGARGWLQFVELSYLNKASNGLLVHDVC 130
             D K   +  +R+ + L S H +  +  W + S    GW  F+ ++ L K    L   D  
Sbjct:   156 DEKNFKQGHVRVLNPLGSNHVEVQSSCWYKESSRGWGWDHFLSIANLRKTY--LDKEDAL 213

Query:   131 IVEAEVSVLGISK 143
              VE E  V+  +K
Sbjct:   214 NVEIEFKVVSATK 226

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2075321 AT3G46190 "AT3G46190" [Arabidopsis thaliana (taxid:3702)]

 Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 46/134 (34%), Positives = 75/134 (55%)

Query:    12 YVWKIENFSKLEAKFYESEVFVAGDQKWKIRLYPKGQGQRTGSHLSMFLALADSSTVTRD 71
             + W + NFS L    Y S+ F +GD+ W +++YP G G    + LS++L L++S+     
Sbjct:   163 FTWSLPNFSTLTLDSYTSDPFSSGDRNWVLKVYPNGDGVGKDNSLSLYL-LSESNE---- 217

Query:    72 FKICVRYTLRIRDQLQSKHNDKIARTWIRPSIGARGW--LQFVELSYLNKASNGLLVHDV 129
              K  VR TLR+ +Q+ S + +K    W  P+    GW   +F+ L+ L  A+ G +V D 
Sbjct:   218 -KNYVRATLRVLNQIGSDNVEKPVEGW--PNAAENGWGYQEFIPLADLQDATKGFVVDD- 273

Query:   130 CIVEAEVSVLGISK 143
              ++E EV ++ ISK
Sbjct:   274 -LLEVEVEIMAISK 286

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2085445 AT3G58210 "AT3G58210" [Arabidopsis thaliana (taxid:3702)]

 Score = 190 (71.9 bits), Expect = 1.2e-14, P = 1.2e-14
 Identities = 46/136 (33%), Positives = 73/136 (53%)

Query:    11 KYVWKIENFSKLEAKFYESEVFVAGDQKWKIRLYPKGQGQRTGSHLSMFLALADSSTVTR 70
             K+ W I+NFS  +++   S  FV G  KW++ +YP+G   ++G HLS+FL +AD  ++  
Sbjct:     8 KFTWVIQNFSSSQSRVVPSNQFVIGGCKWRLLVYPEGFN-KSGDHLSLFLEVADPRSLPP 66

Query:    71 DFKICVRYTLRIRDQLQSKHNDKIART-----WIRPSIGARGWLQFVELSYLNKASNGLL 125
              +    RY L I +Q    H+DKI++      W    I   G    + L+ L+    G L
Sbjct:    67 GWSRHARYLLTIVNQ----HSDKISKRNEATKWFNQKIPGWGLSAMIPLTKLHAKDGGFL 122

Query:   126 VHDVCIVEAEVSVLGI 141
             V+D   + AEV+VL +
Sbjct:   123 VNDELKIVAEVNVLEV 138

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0007059 "chromosome segregation" evidence=RCA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

GO:0042138 "meiotic DNA double-strand break formation" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

TAIR|locus:2026751 AT1G69650 "AT1G69650" [Arabidopsis thaliana (taxid:3702)]

 Score = 187 (70.9 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 44/134 (32%), Positives = 70/134 (52%)

Query:    11 KYVWKIENFSKL-EAKFYESEVFVAGDQKWKIRLYPKGQGQRTGSHLSMFLALADSSTVT 69
             K  W ++NFS+  E +  +   F  G ++W ++L+PKG  +  G +LS+FL LAD+ T+ 
Sbjct:   158 KVTWSVKNFSQWKENECSKPNRFSIGGREWVLKLFPKGNSRAKGKYLSVFLYLADNETLK 217

Query:    70 RDFKICVRYTLRIRDQLQSKHNDKIARTWIRPSIGARGWLQFVELSYLNKASNGLLVHDV 129
              D KI  +  +RI + L S H       W + S    GW +F+ L  + K    L   D 
Sbjct:   218 PDEKIFTQVVVRILNPLGSNHVASRLNYWHKGSNFGYGWCKFLSLDKIRKTY--LDKEDT 275

Query:   130 CIVEAEVSVLGISK 143
              ++EAE  V+  +K
Sbjct:   276 LMIEAEFEVVSATK 289

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005773 "vacuole" evidence=IDA

TAIR|locus:2059364 AT2G32870 "AT2G32870" [Arabidopsis thaliana (taxid:3702)]

 Score = 190 (71.9 bits), Expect = 2.6e-14, P = 2.6e-14
 Identities = 43/140 (30%), Positives = 70/140 (50%)

Query:    11 KYVWKIENFSKLEAKFYESEVFVAGDQKWKIRLYPKGQGQRTGSHLSMFLALADSSTVTR 70
             ++ WKI  FS  + + + S  F  G ++WK+ +YPKG G   G+ LS++L  +D  T   
Sbjct:   277 RFTWKITQFSSFDGEEHSSYEFTVGPRRWKLVMYPKGNGDGKGNSLSLYLFASDYVTNGP 336

Query:    71 DFKICVRYTLRIRDQLQSKHNDKIARTW-----IRPSIGARGWLQFVELSYLNKASNGLL 125
                    Y LR+ DQL   H +   R W     +       G  +F+ L  L+K+S G L
Sbjct:   337 KGGTLAIYKLRVLDQLNRNHCETECRYWFPYNPVNQMDSLWGRPKFLPLEELHKSSRGFL 396

Query:   126 VHDVCIVEAEVSVLGISKAL 145
             V+D   +  E+S++  ++ L
Sbjct:   397 VNDQIYIGVEISIVSTTEYL 416

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2092344 AT3G20370 "AT3G20370" [Arabidopsis thaliana (taxid:3702)]

 Score = 184 (69.8 bits), Expect = 9.1e-14, P = 9.1e-14
 Identities = 45/137 (32%), Positives = 69/137 (50%)

Query:    11 KYVWKIENFSKLEAKFYESEVFVAGDQKWKIRLYPKGQGQRTGSHLSMFLALADSSTVTR 70
             ++ W I  FS L    Y SEVF  G + W I++ P G G   G  LSM+L L + + + R
Sbjct:   240 RFTWTIRGFSTLLKNSYLSEVFSIGGRSWNIQINPSGLGTGEGKALSMYLGL-NVNEIFR 298

Query:    71 DF-KICVRYTLRIRDQLQSKHNDKIARTWIR-PSIGARGW--LQFVELSYLNKASNGLLV 126
              + KI VR  LR  +QL   + ++    W   P  G   W   +F+   YL  +S G + 
Sbjct:   299 PYEKIYVRAKLRALNQLNLSNIERELDIWYNGPGYGEYSWGFPEFIYFPYLTDSSKGFVK 358

Query:   127 HDVCIVEAEVSVLGISK 143
             +DV +V+ E+  +  +K
Sbjct:   359 NDVLMVQVEMEAISSTK 375

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2059354 AT2G32880 "AT2G32880" [Arabidopsis thaliana (taxid:3702)]

 Score = 180 (68.4 bits), Expect = 1.4e-13, P = 1.4e-13
 Identities = 43/144 (29%), Positives = 73/144 (50%)

Query:    11 KYVWKIENFSKLEAKFYESEVFVAGDQKWKIRLYPKGQGQRTGSHLSMFLALADSSTVT- 69
             ++ WKI  FS    + + S  F  G ++WK+ +YP+G G   G+ LS++L  ++  T   
Sbjct:   178 RFTWKITKFSSFNGEEHSSYEFTVGPRRWKLVMYPRGTGDGKGNSLSLYLNASNYVTNNG 237

Query:    70 ---RDFKICVRYTLRIRDQLQSKHNDKIARTW-----IRPSIGARGWLQFVELSYLNKAS 121
                R F +   Y LR+ DQL   H +   + W     + P + + G  +F+ L  L+KAS
Sbjct:   238 PKGRTFAV---YKLRVLDQLHRNHFEIDCQDWFLYDPVHPRLCSWGRTKFLPLEELHKAS 294

Query:   122 NGLLVHDVCIVEAEVSVLGISKAL 145
              G LV+D   +  E  ++  ++ L
Sbjct:   295 RGFLVNDQIYIGVEFLIVSTTEYL 318

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh2_kg.3__1915__AT3G17380.1 annotation not avaliable (309 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	145
cd00121	126	cd00121, MATH, MATH (meprin and TRAF-C homology) d	5e-28
smart00061	95	smart00061, MATH, meprin and TRAF homology	3e-10
cd03775	134	cd03775, MATH_Ubp21p, Ubiquitin-specific protease	1e-08
cd03774	139	cd03774, MATH_SPOP, Speckle-type POZ protein (SPOP	2e-07
pfam00917	116	pfam00917, MATH, MATH domain	3e-07
COG5077	1089	COG5077, COG5077, Ubiquitin carboxyl-terminal hydr	5e-06
cd03773	132	cd03773, MATH_TRIM37, Tripartite motif containing	1e-04
cd03776	147	cd03776, MATH_TRAF6, Tumor Necrosis Factor Recepto	0.003
cd00270	149	cd00270, MATH_TRAF_C, Tumor Necrosis Factor Recept	0.004

>gnl|CDD|238068 cd00121, MATH, MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins

 Score = 99.8 bits (249), Expect = 5e-28
 Identities = 40/127 (31%), Positives = 61/127 (48%), Gaps = 4/127 (3%)

Query: 11  KYVWKIENFSKLEAKFYESEVFVAGDQKWKIRLYPKGQGQRTGSHLSMFLALADSSTVTR 70
           K+ WKI NFS+LE +   S  F  G  KW+IR+YP G G+  G +LS++L L    +   
Sbjct: 2   KHTWKIVNFSELEGESIYSPPFEVGGYKWRIRIYPNGDGES-GDYLSLYLELDKGESDLE 60

Query: 71  DFKICVRYTLRIRDQLQSKHNDKIARTWIRPSIG-ARGWLQFVELSYLNKASNGLLVHDV 129
            + +   +TL++ +Q   K   K          G   G+ +F+    L  +    LV D 
Sbjct: 61  KWSVRAEFTLKLVNQNGGKSLSKSFTHVFFSEKGSGWGFPKFISWDDLEDSYY--LVDDS 118

Query: 130 CIVEAEV 136
             +E EV
Sbjct: 119 LTIEVEV 125

Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH domain has been shown to bind peptide/protein substrates in TRAFs and HAUSP. It is possible that the MATH domain in other members of this superfamily also interacts with various protein substrates. The TRAF domain may also be involved in the trimerization of TRAFs. Based on homology, it is postulated that the MATH domain in meprins may be involved in its tetramer assembly and that the MATH domain, in general, may take part in diverse modular arrangements defined by adjacent multimerization domains. Length = 126

>gnl|CDD|214496 smart00061, MATH, meprin and TRAF homology

 Score = 53.5 bits (129), Expect = 3e-10
 Identities = 22/101 (21%), Positives = 43/101 (42%), Gaps = 9/101 (8%)

Query: 13  VWKIENFSKLEA-KFYESEVFVAGDQKWKIRLYPKGQGQRTGSHLSMFLALADSSTVTRD 71
               +N S+LE  + Y S      +  W++++Y K         LS++L        +R 
Sbjct: 3   SHTFKNVSRLEEGESYFSPSEEHFNIPWRLKIYRK------NGFLSLYLHCEKEECDSRK 56

Query: 72  FKICVRYTLRIRDQLQSKHNDKIARTWIRPSIGARGWLQFV 112
           + I   +TL++  Q     + K    + +PS    G+ +F+
Sbjct: 57  WSIEAEFTLKLVSQNGKSLSKKDKHVFEKPSG--WGFSKFI 95

Length = 95

>gnl|CDD|239744 cd03775, MATH_Ubp21p, Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast

 Score = 50.0 bits (120), Expect = 1e-08
 Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 12/119 (10%)

Query: 12  YVWKIENFSKLEAKFYESEVFVAGDQKWKIRLYPKGQGQRTGSHLSMFLA----LADSST 67
           + W+I+N+S+LE K + S  F  G  +W+I L+P+G  Q  G  +S++L       + + 
Sbjct: 3   FTWRIKNWSELEKKVH-SPKFKCGGFEWRILLFPQGNSQTGG--VSIYLEPHPEEEEKAP 59

Query: 68  VTRDFKICVRYTLRI---RDQLQSKHNDKIARTWIRPSIGARGWLQFVELSYLNKASNG 123
           +  D+ +C ++ L I    D      N    R          G+ +F+EL  L   +  
Sbjct: 60  LDEDWSVCAQFALVISNPGDPSIQLSNVAHHR--FNAEDKDWGFTRFIELRKLAHRTPD 116

Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding. Length = 134

>gnl|CDD|239743 cd03774, MATH_SPOP, Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP

 Score = 46.8 bits (111), Expect = 2e-07
 Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 13/138 (9%)

Query: 11  KYVWKIENFSKLEAKFYE---SEVFVAGDQ---KWKIRLYPKGQGQRTGSHLSMFLALAD 64
            Y+W I NFS    +  E   S  F +G     KW +R+ PKG  + +  +LS++L L  
Sbjct: 6   CYMWTISNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVS 65

Query: 65  --SSTVTRDFKICVRYTLRIRDQLQSKHNDKIARTWIRPSIGARGWLQFVELSYLNKASN 122
              S V   FK  +     +  + +     +  R +        G+ +F+   +L   +N
Sbjct: 66  CPKSEVRAKFKFSI-----LNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEAN 120

Query: 123 GLLVHDVCIVEAEVSVLG 140
           GLL  D   +  EVSV+ 
Sbjct: 121 GLLPDDKLTLFCEVSVVQ 138

SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, containing both MATH and BTB domains from C. elegans and plants which are excluded from this family. Length = 139

>gnl|CDD|216189 pfam00917, MATH, MATH domain

 Score = 45.7 bits (109), Expect = 3e-07
 Identities = 31/127 (24%), Positives = 54/127 (42%), Gaps = 15/127 (11%)

Query: 16  IENFSKLEAK--FYESEVFVAGDQKWKIRLYPKGQGQRTGSHLSMFL-ALADSSTVTRDF 72
           I+NFSK++    +Y S         W++R+Y        G  L ++L            +
Sbjct: 1   IKNFSKIKEGENYYTSPYEERFGIPWRLRIYRN------GGFLGLYLHCEKGEKDELLGW 54

Query: 73  KICVRYTLRI-RDQLQSKHNDKIARTWIRPSIGARGWLQFVELSYLNKASNGLLVHDVCI 131
            I   +TL++  D  +S      +  + +P+    GW +F+    L    N  +V D  I
Sbjct: 55  SIETEFTLKLVSDNGKSLTKRNKSHVFTKPT--GYGWGKFISWDDLE---NDYVVDDTII 109

Query: 132 VEAEVSV 138
           +EAEV +
Sbjct: 110 IEAEVKI 116

This motif has been called the Meprin And TRAF-Homology (MATH) domain. This domain is hugely expanded in the nematode C. elegans. Length = 116

>gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

 Score = 44.5 bits (105), Expect = 5e-06
 Identities = 27/112 (24%), Positives = 47/112 (41%), Gaps = 12/112 (10%)

Query: 12  YVWKIENFSKLEAKFYESEVFVAGDQKWKIRLYPKGQGQRTGSHLSMFLAL---ADSSTV 68
           + WK++ +S+L  K  ES  F  G   WKI L+P+G  Q    ++S++L         T 
Sbjct: 41  FTWKVKRWSELAKK-VESPPFSVGGHTWKIILFPQGNNQ---CNVSVYLEYEPQELEETG 96

Query: 69  TRDFKICVRYTLRI---RDQLQSKHNDKIARTWIRPSIGARGWLQFVELSYL 117
            + +  C ++   I   +       N    R          G+  F++L+ L
Sbjct: 97  GKYYDCCAQFAFDISNPKYPTIEYINKSHHR--FSMESTDWGFTNFIDLNKL 146

Length = 1089

>gnl|CDD|239742 cd03773, MATH_TRIM37, Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 16/123 (13%)

Query: 13  VWKIENFSKLE--AKFYESEVFVAGDQKWKIRLYPKGQGQRTGSHLSMFLALADSSTVTR 70
            + +ENFS L   A    S+        W++++YP G G+  G+ LS+FL L        
Sbjct: 8   TFTLENFSTLRQSADPVYSDPLNVDGLCWRLKVYPDGNGEVRGNFLSVFLELCSGLGEA- 66

Query: 71  DFKICVRYTLRIRDQLQSKHNDKIARTWIRP-SIGAR-GWLQFVELS------YLNKASN 122
                 +Y  R+    Q+     I R +     +G   G+ +F  L       YL   ++
Sbjct: 67  -----SKYEYRVEMVHQANPTKNIKREFASDFEVGECWGYNRFFRLDLLINEGYLLPEND 121

Query: 123 GLL 125
            L+
Sbjct: 122 TLI 124

Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs in vitro, however, it is unclear whether this is physiologically relevant. Eleven TRIM37 mutations have been associated with Mulibrey nanism so far. One mutation, Gly322Val, is located in the MATH domain and is the only mutation that does not affect the length of the protein. It results in the incorrect subcellular localization of TRIM37. Length = 132

>gnl|CDD|239745 cd03776, MATH_TRAF6, Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2

 Score = 35.4 bits (82), Expect = 0.003
 Identities = 35/151 (23%), Positives = 59/151 (39%), Gaps = 31/151 (20%)

Query: 12  YVWKIENFSKL-------EAKFYESEVFVAGDQKWK--IRLYPKGQGQRTGSHLSMFLAL 62
           YVWKI+NFS L             S  F      +K   RL       R  +++S+F+ L
Sbjct: 3   YVWKIKNFSNLRRSMEAGSPVVIHSPGFYTSPPGYKLCARLNLSLPEARCPNYISLFVHL 62

Query: 63  A----DSSTVTRDFKICVRYTLRIRDQLQSKHNDKIARTWIRPSIGA------------R 106
                DS     D+      TL + DQ + + N        +P + A             
Sbjct: 63  MQGENDSHL---DWPFQGTITLTLLDQSEPRQN-IHETMMSKPELLAFQRPTTDRNPKGF 118

Query: 107 GWLQFVELSYLNKASNGLLVHDVCIVEAEVS 137
           G+++F  +  L +   G + +D  +++ EV+
Sbjct: 119 GYVEFAHIEDLLQ--RGFVKNDTLLIKIEVN 147

TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kappaB, plays a pivotal role in Drosophila development and innate immunity. TRAF6 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal alpha helical region (TRAF-N), and a highly conserved C-terminal MATH subdomain (TRAF-C) with an eight-stranded beta-sandwich structure. TRAF-N mediates trimerization while TRAF-C interacts with receptors. Length = 147

>gnl|CDD|238168 cd00270, MATH_TRAF_C, Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems

 Score = 34.9 bits (81), Expect = 0.004
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 9/59 (15%)

Query: 11 KYVWKIENFS-KLEAKFYESEV------FVAGDQKWK--IRLYPKGQGQRTGSHLSMFL 60
            +WKI+++S KL+     S        F      +K  +RLY  G G   G+HLS+F+
Sbjct: 2  VLIWKIKDYSRKLQEAVAGSNTVLYSPPFYTSRYGYKLCLRLYLNGDGTGKGTHLSLFV 60

There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-terminal alpha helical region (TRAF-N), and a highly conserved C-terminal MATH subdomain (TRAF-C) with an eight-stranded beta-sandwich structure. TRAF-N mediates trimerization while TRAF-C interacts with receptors. Length = 149

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	145
cd03772	137	MATH_HAUSP Herpesvirus-associated ubiquitin-specif	100.0
cd03775	134	MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p	100.0
cd03774	139	MATH_SPOP Speckle-type POZ protein (SPOP) family,	99.98
cd03773	132	MATH_TRIM37 Tripartite motif containing protein 37	99.97
cd00270	149	MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-	99.96
cd03780	148	MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-A	99.96
cd03779	147	MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) A	99.96
cd03781	154	MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-A	99.96
cd03776	147	MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-A	99.96
cd03777	186	MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-A	99.96
cd00121	126	MATH MATH (meprin and TRAF-C homology) domain; an	99.95
cd03778	164	MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) A	99.95
cd03771	167	MATH_Meprin Meprin family, MATH domain; Meprins ar	99.95
PF00917	119	MATH: MATH domain; InterPro: IPR002083 Although ap	99.93
cd03782	167	MATH_Meprin_Beta Meprin family, Beta subunit, MATH	99.87
smart00061	95	MATH meprin and TRAF homology.	99.85
cd03783	167	MATH_Meprin_Alpha Meprin family, Alpha subunit, MA	99.85
COG5077	1089	Ubiquitin carboxyl-terminal hydrolase [Posttransla	99.7
KOG1987	297	consensus Speckle-type POZ protein SPOP and relate	98.92
KOG1863	1093	consensus Ubiquitin carboxyl-terminal hydrolase [P	98.65
KOG0297	391	consensus TNF receptor-associated factor [Signal t	97.68

>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway

Probab=100.00  E-value=6e-32  Score=182.65  Aligned_cols=130  Identities=17%  Similarity=0.261  Sum_probs=110.1

Q ss_pred             CCEEEEEEcccccccCceEecCcEEEcceEEEEEEEeCCCCC--CCCCeEEEEEEecCCCCCCCCceEEEEEEEEEEcCC
Q 041280            9 ICKYVWKIENFSKLEAKFYESEVFVAGDQKWKIRLYPKGQGQ--RTGSHLSMFLALADSSTVTRDFKICVRYTLRIRDQL   86 (145)
Q Consensus         9 ~~~~~w~I~nfs~~~~~~~~S~~f~~~g~~W~l~~~p~g~~~--~~~~~ls~yL~~~~~~~~~~~~~~~~~f~~~l~n~~   86 (145)
                      .++++|+|+|||.+ ++.++|+.|.+||++|+|++||+|...  +..+|||+||.|.... ....|++.|+|+|+|+|+.
T Consensus         2 ~~~~~~~I~~~S~l-~e~~~S~~f~vgG~~W~i~~~P~g~~~~~~~~~~lsvyL~~~~~~-~~~~w~i~a~~~~~l~~~~   79 (137)
T cd03772           2 EATFSFTVERFSRL-SESVLSPPCFVRNLPWKIMVMPRNYPDRNPHQKSVGFFLQCNAES-DSTSWSCHAQAVLRIINYK   79 (137)
T ss_pred             CcEEEEEECCcccC-CCcEECCCEEECCcceEEEEEeCCCCCCCCCCCeEEEEEeeCCcC-CCCCCeEEEEEEEEEEcCC
Confidence            57899999999998 788999999999999999999999654  2358999999998643 3348999999999999998


Q ss_pred             CCc-ccceecceeecCccccccccceeeccccccCCCCeeeCCEEEEEEEEEEEe
Q 041280           87 QSK-HNDKIARTWIRPSIGARGWLQFVELSYLNKASNGLLVHDVCIVEAEVSVLG  140 (145)
Q Consensus        87 ~~~-~~~~~~~~~F~~~~~~wG~~~fi~~~~L~~~~~~fl~dd~l~i~~~i~v~~  140 (145)
                      ++. ...+...+.|.....+|||++||+|++|.++.+|||+||+|+|+|+|+|--
T Consensus        80 ~~~~~~~~~~~~~f~~~~~~~G~~~fi~~~~L~~~~sgyl~~D~l~Ie~~V~~~~  134 (137)
T cd03772          80 DDEPSFSRRISHLFFSKENDWGFSNFMTWSEVTDPEKGFIEDDTITLEVYVQADA  134 (137)
T ss_pred             CCcccEEEeeeeEEcCCCCCccchheeEHHHhcCCCCCcEECCEEEEEEEEEeeC
Confidence            543 333344467876678999999999999987778999999999999998854

It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1

>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast

Probab=100.00  E-value=9.3e-32  Score=181.11  Aligned_cols=124  Identities=23%  Similarity=0.479  Sum_probs=106.1

Q ss_pred             EEEEEEcccccccCceEecCcEEEcceEEEEEEEeCCCCCCCCCeEEEEEEecCCCC----CCCCceEEEEEEEEEEcCC
Q 041280           11 KYVWKIENFSKLEAKFYESEVFVAGDQKWKIRLYPKGQGQRTGSHLSMFLALADSST----VTRDFKICVRYTLRIRDQL   86 (145)
Q Consensus        11 ~~~w~I~nfs~~~~~~~~S~~f~~~g~~W~l~~~p~g~~~~~~~~ls~yL~~~~~~~----~~~~~~~~~~f~~~l~n~~   86 (145)
                      +++|+|+|||.+ ++.+.|+.|.+||++|+|.+||+|...  .+|+|+||++.+.+.    .+++|+++|+|+|+|+||.
T Consensus         2 ~f~w~I~~fS~~-~~~~~S~~F~vGG~~W~l~~yP~G~~~--~~~iSlyL~l~~~~~~~~~~~~~~~v~a~f~~~l~n~~   78 (134)
T cd03775           2 SFTWRIKNWSEL-EKKVHSPKFKCGGFEWRILLFPQGNSQ--TGGVSIYLEPHPEEEEKAPLDEDWSVCAQFALVISNPG   78 (134)
T ss_pred             cEEEEECCcccC-CcceeCCCEEECCeeEEEEEeCCCCCC--CCeEEEEEEecCcccccccCCCCCeEEEEEEEEEEcCC
Confidence            589999999996 678999999999999999999999765  589999999976543    2578999999999999997


Q ss_pred             CCc-ccceecceeecCccccccccceeeccccccC----CCCeeeCCEEEEEEEEE
Q 041280           87 QSK-HNDKIARTWIRPSIGARGWLQFVELSYLNKA----SNGLLVHDVCIVEAEVS  137 (145)
Q Consensus        87 ~~~-~~~~~~~~~F~~~~~~wG~~~fi~~~~L~~~----~~~fl~dd~l~i~~~i~  137 (145)
                      ++. +......+.|+....+|||.+||++++|++|    ++|||+||+|+|+|.|+
T Consensus        79 ~~~~~~~~~~~~~F~~~~~~wG~~~fi~~~~L~~~~~~~~~g~l~nD~l~I~~~~~  134 (134)
T cd03775          79 DPSIQLSNVAHHRFNAEDKDWGFTRFIELRKLAHRTPDKPSPFLENGELNITVYVR  134 (134)
T ss_pred             CCccceEccceeEeCCCCCCCChhHcccHHHHcccccCCCCceeECCEEEEEEEEC
Confidence            654 2334456789877789999999999999965    57999999999999874

Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.

>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP

Probab=99.98  E-value=1.6e-31  Score=180.91  Aligned_cols=130  Identities=25%  Similarity=0.411  Sum_probs=109.4

Q ss_pred             CCCCEEEEEEccccccc---CceEecCcEEEcc---eEEEEEEEeCCCCCCCCCeEEEEEEecCCCCCCCCceEEEEEEE
Q 041280            7 ASICKYVWKIENFSKLE---AKFYESEVFVAGD---QKWKIRLYPKGQGQRTGSHLSMFLALADSSTVTRDFKICVRYTL   80 (145)
Q Consensus         7 ~~~~~~~w~I~nfs~~~---~~~~~S~~f~~~g---~~W~l~~~p~g~~~~~~~~ls~yL~~~~~~~~~~~~~~~~~f~~   80 (145)
                      +...+|+|+|+|||.+.   ++.+.|+.|.+||   ++|+|++||+|..++..+|+|+||++.+.+    .++++|+|+|
T Consensus         2 ~~~~~~~w~I~~fS~~~~~~~~~i~S~~F~vgg~~~~~W~l~~yP~G~~~~~~~~iSlyL~l~~~~----~~~v~a~f~~   77 (139)
T cd03774           2 VVKFCYMWTISNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCP----KSEVRAKFKF   77 (139)
T ss_pred             ceEEEEEEEECCchhhhhcCCCEEECCCeecCCcCCceEEEEEeCCCCCCCCCCeEEEEEEEccCC----CCcEEEEEEE
Confidence            45679999999999874   6789999999998   499999999998766678999999997642    3679999999


Q ss_pred             EEEcCCCCccc--ceecceeecCccccccccceeeccccccCCCCeeeCCEEEEEEEEEEEee
Q 041280           81 RIRDQLQSKHN--DKIARTWIRPSIGARGWLQFVELSYLNKASNGLLVHDVCIVEAEVSVLGI  141 (145)
Q Consensus        81 ~l~n~~~~~~~--~~~~~~~F~~~~~~wG~~~fi~~~~L~~~~~~fl~dd~l~i~~~i~v~~~  141 (145)
                      .|+|+++++..  .....+.|+ ...+|||.+||++++|+++.+|||+||+|+|+|+|+|+++
T Consensus        78 ~l~n~~~~~~~~~~~~~~~~f~-~~~~wG~~~fi~~~~L~~~~~g~l~dD~l~I~c~I~V~~~  139 (139)
T cd03774          78 SILNAKGEETKAMESQRAYRFV-QGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQD  139 (139)
T ss_pred             EEEecCCCeeeeecccCcEeCC-CCCccCHHHeeeHHHhhhhhcccccCCEEEEEEEEEEEcC
Confidence            99999977532  222346676 4678999999999999877789999999999999999863

SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta

>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins

Probab=99.97  E-value=7.1e-30  Score=171.36  Aligned_cols=124  Identities=24%  Similarity=0.371  Sum_probs=104.0

Q ss_pred             CCCCEEEEEEccccccc--CceEecCcEEEcceEEEEEEEeCCCCCCCCCeEEEEEEecCCCCCCCCceEEEEEEEEEEc
Q 041280            7 ASICKYVWKIENFSKLE--AKFYESEVFVAGDQKWKIRLYPKGQGQRTGSHLSMFLALADSSTVTRDFKICVRYTLRIRD   84 (145)
Q Consensus         7 ~~~~~~~w~I~nfs~~~--~~~~~S~~f~~~g~~W~l~~~p~g~~~~~~~~ls~yL~~~~~~~~~~~~~~~~~f~~~l~n   84 (145)
                      ++..+++|+|+|||.++  ++.++|+.|.+||++|+|.+||+|..++..+|||+||.+.+.    ..+.+.++|+|+|+|
T Consensus         2 ~~~~~~~~~I~~fS~~~~~~~~~~S~~F~vgG~~W~i~~yP~G~~~~~~~~lSl~L~l~~~----~~~~~~~~~~l~lln   77 (132)
T cd03773           2 PPYDSATFTLENFSTLRQSADPVYSDPLNVDGLCWRLKVYPDGNGEVRGNFLSVFLELCSG----LGEASKYEYRVEMVH   77 (132)
T ss_pred             CCCcccEEEECChhhhhcCCcceeCCCeEeCCccEEEEEECCCCCCCCCCEEEEEEEeecC----CCCceeEEEEEEEEc
Confidence            45678999999999985  678999999999999999999999887667899999999764    246788899999999


Q ss_pred             CCCC-cccceecceeecCccccccccceeeccccccCCCCeeeC--CEEEEEEEEE
Q 041280           85 QLQS-KHNDKIARTWIRPSIGARGWLQFVELSYLNKASNGLLVH--DVCIVEAEVS  137 (145)
Q Consensus        85 ~~~~-~~~~~~~~~~F~~~~~~wG~~~fi~~~~L~~~~~~fl~d--d~l~i~~~i~  137 (145)
                      |.++ ++......+.|.. +.+|||.+||++++|++  +|||+|  |+|+|+|.|+
T Consensus        78 q~~~~~~~~~~~~~~f~~-~~~wG~~~Fi~~~~L~~--~gfl~~~~D~l~i~~~v~  130 (132)
T cd03773          78 QANPTKNIKREFASDFEV-GECWGYNRFFRLDLLIN--EGYLLPENDTLILRFSVR  130 (132)
T ss_pred             CCCCccceEEeccccccC-CCCcCHHHhccHHHHhh--CCCcCCCCCEEEEEEEEe
Confidence            9533 3444444567764 57899999999999986  699999  9999999986

Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i

>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems

Probab=99.96  E-value=6e-29  Score=170.07  Aligned_cols=126  Identities=25%  Similarity=0.411  Sum_probs=102.8

Q ss_pred             CEEEEEEccccccc-------CceEecCcEEEc--ceEEEEEEEeCCCCCCCCCeEEEEEEecCCCC-CCCCceEEEEEE
Q 041280           10 CKYVWKIENFSKLE-------AKFYESEVFVAG--DQKWKIRLYPKGQGQRTGSHLSMFLALADSST-VTRDFKICVRYT   79 (145)
Q Consensus        10 ~~~~w~I~nfs~~~-------~~~~~S~~f~~~--g~~W~l~~~p~g~~~~~~~~ls~yL~~~~~~~-~~~~~~~~~~f~   79 (145)
                      ++|+|+|+|||.++       ++.++|+.|.+|  |++|+|++||+|..++.++|||+||++.+.+. ...+|+++++|+
T Consensus         1 g~~~w~I~~fs~~~~~~~~~~~~~~~S~~F~vg~~G~~w~i~~yP~G~~~~~~~~lsl~L~l~~~~~d~~~~w~~~~~~~   80 (149)
T cd00270           1 GVLIWKIKDYSRKLQEAVAGSNTVLYSPPFYTSRYGYKLCLRLYLNGDGTGKGTHLSLFVHVMKGEYDALLEWPFRGKIT   80 (149)
T ss_pred             CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCCCCCEEEEEEEEeccCCCccccCCccceEE
Confidence            57999999999984       358999999999  99999999999987666789999999987643 246799999999


Q ss_pred             EEEEcCCCC---ccccee-----cceeec-----CccccccccceeeccccccCCCCeeeCCEEEEEEEEE
Q 041280           80 LRIRDQLQS---KHNDKI-----ARTWIR-----PSIGARGWLQFVELSYLNKASNGLLVHDVCIVEAEVS  137 (145)
Q Consensus        80 ~~l~n~~~~---~~~~~~-----~~~~F~-----~~~~~wG~~~fi~~~~L~~~~~~fl~dd~l~i~~~i~  137 (145)
                      |+|+||.++   ++....     ..+.|.     ..+.+|||.+||++++|++  .|||+||+|+|+|+|.
T Consensus        81 ~~l~d~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~G~~~fi~~~~L~~--~gfl~dD~l~I~~~v~  149 (149)
T cd00270          81 LTLLDQSDDSKRKHITETFMPDPNSSAFQRPPTGENNIGFGYPEFVPLEKLES--RGYVKDDTLFIKVEVD  149 (149)
T ss_pred             EEEECCCCccccCceEEEEEcCCchHhhcCCCcccCCCCcCcceEeEHHHhcc--CCCEeCCEEEEEEEEC
Confidence            999999874   222111     123453     1457899999999999987  4899999999999984

There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter

>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.96  E-value=1.1e-28  Score=168.16  Aligned_cols=128  Identities=24%  Similarity=0.333  Sum_probs=105.2

Q ss_pred             CEEEEEEccccccc-----Cc--eEecCcE--EEcceEEEEEEEeCCCCCCCCCeEEEEEEecCCCCC-CCCceEEEEEE
Q 041280           10 CKYVWKIENFSKLE-----AK--FYESEVF--VAGDQKWKIRLYPKGQGQRTGSHLSMFLALADSSTV-TRDFKICVRYT   79 (145)
Q Consensus        10 ~~~~w~I~nfs~~~-----~~--~~~S~~f--~~~g~~W~l~~~p~g~~~~~~~~ls~yL~~~~~~~~-~~~~~~~~~f~   79 (145)
                      +.+.|+|+|||.++     |.  .++|++|  ..+||+|+|++||||.+.+.++|||+||.+++.+.+ -..|+++++++
T Consensus         1 g~~vwkI~~ys~~~~~~~~g~~~~i~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~~iSv~l~l~~g~~D~~l~wp~~~~~t   80 (148)
T cd03780           1 GKLIWKVTDYKMKKKEAVDGHTVSIFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFRQRVT   80 (148)
T ss_pred             CEEEEEECCHHHHHHhhcCCCccEEECCCcccCCCCeeEEEEEEcCCCCCCCCCEEEEEEEEecCccccccCcceEEEEE
Confidence            57899999999985     44  7999999  899999999999999987778899999999976422 35799999999


Q ss_pred             EEEEcCCCCc-cc--c-e--ecceeecCc----cccccccceeeccccccCCCCeeeCCEEEEEEEEE
Q 041280           80 LRIRDQLQSK-HN--D-K--IARTWIRPS----IGARGWLQFVELSYLNKASNGLLVHDVCIVEAEVS  137 (145)
Q Consensus        80 ~~l~n~~~~~-~~--~-~--~~~~~F~~~----~~~wG~~~fi~~~~L~~~~~~fl~dd~l~i~~~i~  137 (145)
                      |.|++|.+.+ ++  . .  ...+.|...    +.+||+++||++++|++++.+||+||++.|+|.|.
T Consensus        81 fsLlDq~~~~~~~~~~~~~~~~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~s~~~ylkdD~~~Ik~~v~  148 (148)
T cd03780          81 LMLLDQSGKKNHIMETFKADPNSSSFKRPDGEMNIASGCPRFVAHSVLENAKNTYIKDDTLFLKVAVD  148 (148)
T ss_pred             EEEECCCCCCCCcceeeecCCccccccCCCCCCCCCcChhheeEHHHhhcccCCcCcCCEEEEEEEEC
Confidence            9999998543 21  1 1  113557643    56899999999999987446999999999999873

TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more dive

>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.96  E-value=1.9e-28  Score=166.50  Aligned_cols=128  Identities=21%  Similarity=0.287  Sum_probs=103.0

Q ss_pred             CEEEEEEccccccc-----C--ceEecCcEEE--cceEEEEEEEeCCCCCCCCCeEEEEEEecCCC-CCCCCceEEEEEE
Q 041280           10 CKYVWKIENFSKLE-----A--KFYESEVFVA--GDQKWKIRLYPKGQGQRTGSHLSMFLALADSS-TVTRDFKICVRYT   79 (145)
Q Consensus        10 ~~~~w~I~nfs~~~-----~--~~~~S~~f~~--~g~~W~l~~~p~g~~~~~~~~ls~yL~~~~~~-~~~~~~~~~~~f~   79 (145)
                      +.+.|+|+||+++.     +  ..++||+|..  .||+|+|++||||.+.+.++|+|+||.+.+.+ +.-..|+++++++
T Consensus         1 g~~~W~i~~f~~~~~~a~~~~~~~~~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~~iSv~l~l~~g~~D~~l~wpv~~~~t   80 (147)
T cd03779           1 GTFLWKITDVSQKQRESSHGRDVSLCSPAFYTAKYGYKVCLRLYLNGDGAGKGTHISLFFVIMKGEYDALLPWPFRHKVT   80 (147)
T ss_pred             CeEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEcCCCCCCCCCEEEEEEEEecCCcccccCcceEEEEE
Confidence            57899999999864     2  3699999964  49999999999999877788999999999753 2234799999999


Q ss_pred             EEEEcCCCCcccc--eec---ceeec----CccccccccceeeccccccCCCCeeeCCEEEEEEEEE
Q 041280           80 LRIRDQLQSKHND--KIA---RTWIR----PSIGARGWLQFVELSYLNKASNGLLVHDVCIVEAEVS  137 (145)
Q Consensus        80 ~~l~n~~~~~~~~--~~~---~~~F~----~~~~~wG~~~fi~~~~L~~~~~~fl~dd~l~i~~~i~  137 (145)
                      |.|++|.+.+...  ...   .+.|.    ..+.+||+++||++++|++...+||+||+++|+|+|.
T Consensus        81 fsLlDq~~~~~~~~~~~~~~~~~~F~rP~~~~n~~~G~~~Fi~~~~Le~s~~~ylkDD~~~Irc~V~  147 (147)
T cd03779          81 FMLLDQNNREHVIDAFRPDLSSASFQRPVSDMNVASGCPLFFPLKKLQSPKHAYCKDDTIYIKCVVD  147 (147)
T ss_pred             EEEECCCCCCCCcEeecCCcccccccCcccCCCCCcchhheeEHHHhcccCCCcEeCCEEEEEEEEC
Confidence            9999998654321  111   25586    3456899999999999987335999999999999983

TRAF1 expression is the most restricted among the TRAFs. It is found exclusively in activated lymphocytes, dendritic cells and certain epithelia. TRAF1 associates, directly or indirectly through heterodimerization with TRAF2, with the TNFR family receptors TNFR-2, CD30, RANK, CD40 and LMP1, among others. It also binds the intracellular proteins TRADD, TANK, TRIP, RIP1, RIP2 and FLIP. TRAF1 is unique among the TRAFs in that it lacks a RING domain, which is critical for the activation of nuclear factor-kappaB and Jun NH2-terminal kinase. Studies on TRAF1-deficient mice suggest that TRAF1 has a negative regulatory role in TNFR-mediat

>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1

Probab=99.96  E-value=4.5e-28  Score=166.68  Aligned_cols=126  Identities=21%  Similarity=0.322  Sum_probs=102.5

Q ss_pred             CEEEEEEccccccc-------CceEecCcEEEc--ceEEEEEEEeCCCCCCCCCeEEEEEEecCCCCCC-CCceEEEEEE
Q 041280           10 CKYVWKIENFSKLE-------AKFYESEVFVAG--DQKWKIRLYPKGQGQRTGSHLSMFLALADSSTVT-RDFKICVRYT   79 (145)
Q Consensus        10 ~~~~w~I~nfs~~~-------~~~~~S~~f~~~--g~~W~l~~~p~g~~~~~~~~ls~yL~~~~~~~~~-~~~~~~~~f~   79 (145)
                      +.|.|+|+|||.++       ++.+.|+.|.+|  ||+|+|++||||..++..+|||+||++.+.+..+ ..|+++++|+
T Consensus         1 g~~~~~I~gys~~~~~~~~~~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~~~~~vs~~l~l~~ge~d~~l~wp~~a~~~   80 (154)
T cd03781           1 GTLLWKITDYSRKLQEAKGRDNLELFSPPFYTHRYGYKLQVSAFLNGNGSGEGSHLSVYIRVLPGEYDNLLEWPFSHRIT   80 (154)
T ss_pred             CEEEEEECCHHHHHHHhhcCCCceEECCCeecCCCCEEEEEEEECCCCCCCCCCEEEEEEEEecCCcccccCCceeeEEE
Confidence            57899999999875       257999999999  9999999999998877778999999999864332 4899999999


Q ss_pred             EEEEcCCCC--c---ccce-----ecceeecC--------ccccccccceeeccccccCCCCeeeCCEEEEEEEEE
Q 041280           80 LRIRDQLQS--K---HNDK-----IARTWIRP--------SIGARGWLQFVELSYLNKASNGLLVHDVCIVEAEVS  137 (145)
Q Consensus        80 ~~l~n~~~~--~---~~~~-----~~~~~F~~--------~~~~wG~~~fi~~~~L~~~~~~fl~dd~l~i~~~i~  137 (145)
                      |+|++|.++  .   ++..     .....|+.        .+.+||+..||++++|+.  .+||+||+|+|+|+|.
T Consensus        81 ~~llDq~~~~~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~~~~~~G~~~fi~~~~Le~--~~yl~dD~l~Irc~v~  154 (154)
T cd03781          81 FTLLDQSDPSLSKPQHITETFTPDPTWKNFQKPSASRLDESTLGFGYPKFISHEDLKK--RNYIKDDAIFLRASVE  154 (154)
T ss_pred             EEEECCCCCccccCcceEEEEEcCCchhhhcCCcccccCCCCCccchhHeeEHHHHhh--CCcccCCEEEEEEEeC
Confidence            999999864  1   1111     11233542        346799999999999997  6899999999999983

TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TR

>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2

Probab=99.96  E-value=1.7e-28  Score=167.59  Aligned_cols=126  Identities=25%  Similarity=0.337  Sum_probs=101.4

Q ss_pred             CEEEEEEccccccc-----Cc--eEecCcEEE--cceEEEEEEEeCCCCCCCCCeEEEEEEecCCCC-CCCCceEEEEEE
Q 041280           10 CKYVWKIENFSKLE-----AK--FYESEVFVA--GDQKWKIRLYPKGQGQRTGSHLSMFLALADSST-VTRDFKICVRYT   79 (145)
Q Consensus        10 ~~~~w~I~nfs~~~-----~~--~~~S~~f~~--~g~~W~l~~~p~g~~~~~~~~ls~yL~~~~~~~-~~~~~~~~~~f~   79 (145)
                      ++|.|+|+|||.++     ++  .++|+.|.+  +||+|+|++||+|..++..+|||+||++.+.+. ...+|+++++|+
T Consensus         1 g~h~~~I~~yS~~~~~~~~g~~~~i~S~~F~~~~gGy~W~i~~yP~G~~~~~~~~lS~~L~l~~~~~d~~l~wpv~a~~~   80 (147)
T cd03776           1 GIYVWKIKNFSNLRRSMEAGSPVVIHSPGFYTSPPGYKLCARLNLSLPEARCPNYISLFVHLMQGENDSHLDWPFQGTIT   80 (147)
T ss_pred             CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCCCCCEEEEEEEEeccCCCcccCCcccceeE
Confidence            57999999999764     34  488999985  799999999999988776789999999987543 345799999999


Q ss_pred             EEEEcCCCCc-ccc-----eecceeecC-----ccccccccceeeccccccCCCCeeeCCEEEEEEEEE
Q 041280           80 LRIRDQLQSK-HND-----KIARTWIRP-----SIGARGWLQFVELSYLNKASNGLLVHDVCIVEAEVS  137 (145)
Q Consensus        80 ~~l~n~~~~~-~~~-----~~~~~~F~~-----~~~~wG~~~fi~~~~L~~~~~~fl~dd~l~i~~~i~  137 (145)
                      |.|++|.++. ++.     ......|..     .+.+|||.+||++++|++  .+||+||+|+|+|+|.
T Consensus        81 ~~lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~~~G~~~fi~~~~Le~--~~yl~dD~l~I~c~V~  147 (147)
T cd03776          81 LTLLDQSEPRQNIHETMMSKPELLAFQRPTTDRNPKGFGYVEFAHIEDLLQ--RGFVKNDTLLIKIEVN  147 (147)
T ss_pred             EEEECCCcccCccEEEEEcCCChHhhcCCCcCCCCCCeeEceeeEHHHhhh--CCCccCCEEEEEEEEC
Confidence            9999998643 221     111234652     346899999999999987  5899999999999984

TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp

>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.96  E-value=1.2e-27  Score=168.42  Aligned_cols=130  Identities=24%  Similarity=0.358  Sum_probs=106.1

Q ss_pred             CCCCEEEEEEccccccc-----Cc--eEecCcEEEc--ceEEEEEEEeCCCCCCCCCeEEEEEEecCCCC-CCCCceEEE
Q 041280            7 ASICKYVWKIENFSKLE-----AK--FYESEVFVAG--DQKWKIRLYPKGQGQRTGSHLSMFLALADSST-VTRDFKICV   76 (145)
Q Consensus         7 ~~~~~~~w~I~nfs~~~-----~~--~~~S~~f~~~--g~~W~l~~~p~g~~~~~~~~ls~yL~~~~~~~-~~~~~~~~~   76 (145)
                      ...+.|.|+|+|||.++     |+  .++||+|..+  ||+|+|++||||.+.+.++|+|+||.+++.+. ....|++.+
T Consensus        36 ~~~G~hvwkI~~yS~~~~~~~~g~~~~i~S~~Fyvg~~GY~w~i~~ypnG~g~~~~~~iSvyl~L~~ge~D~~L~WP~~~  115 (186)
T cd03777          36 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQ  115 (186)
T ss_pred             ccceEEEEEECChhHHHHhhccCCCcEEECCCeEeCCCCeeEEEEEEcCCCCCCCCCEEEEEEEEecCCcccccCCceeE
Confidence            34799999999999875     34  7999999999  99999999999998777889999999997642 234799999


Q ss_pred             EEEEEEEcCCCCc-cc-----ceecceeec-Cc---cccccccceeeccccccCCCCeeeCCEEEEEEEEEE
Q 041280           77 RYTLRIRDQLQSK-HN-----DKIARTWIR-PS---IGARGWLQFVELSYLNKASNGLLVHDVCIVEAEVSV  138 (145)
Q Consensus        77 ~f~~~l~n~~~~~-~~-----~~~~~~~F~-~~---~~~wG~~~fi~~~~L~~~~~~fl~dd~l~i~~~i~v  138 (145)
                      +|+|.|++|.+.. ++     .......|. ..   +.+||+++||++++|+.  .+||+||++.|+|.|..
T Consensus       116 ~~tfsLlDQ~~~~~~~~~~~~p~p~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~--~~ylkdD~l~Irv~v~~  185 (186)
T cd03777         116 KVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDT  185 (186)
T ss_pred             EEEEEEEcCCCccccccceeccCCccccccCCccCCCCCCCchheeEHHHhcc--CCcEeCCEEEEEEEEec
Confidence            9999999997531 11     111224575 23   56899999999999987  68999999999998863

TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al

>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins

Probab=99.95  E-value=8.7e-27  Score=153.47  Aligned_cols=125  Identities=31%  Similarity=0.507  Sum_probs=104.2

Q ss_pred             CEEEEEEcccccccCceEecCcEEEcceEEEEEEEeCCCCCCCCCeEEEEEEecCCCCCCCCceEEEEEEEEEEcCCCCc
Q 041280           10 CKYVWKIENFSKLEAKFYESEVFVAGDQKWKIRLYPKGQGQRTGSHLSMFLALADSSTVTRDFKICVRYTLRIRDQLQSK   89 (145)
Q Consensus        10 ~~~~w~I~nfs~~~~~~~~S~~f~~~g~~W~l~~~p~g~~~~~~~~ls~yL~~~~~~~~~~~~~~~~~f~~~l~n~~~~~   89 (145)
                      .+++|+|.+|+...++.++|+.|.++|+.|+|.+||+|... ..+|+|+||+|......+..|++.++|+|+|+++++.+
T Consensus         1 ~~~~~~i~~~~~~~~~~~~S~~f~~~g~~W~l~~~p~~~~~-~~~~lsv~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   79 (126)
T cd00121           1 GKHTWKIVNFSELEGESIYSPPFEVGGYKWRIRIYPNGDGE-SGDYLSLYLELDKGESDLEKWSVRAEFTLKLVNQNGGK   79 (126)
T ss_pred             CEEEEEECCCCCCCCcEEECCCEEEcCEeEEEEEEcCCCCC-CCCEEEEEEEecCCCCCCCCCcEEEEEEEEEECCCCCc
Confidence            46899999999966888999999999999999999999765 46799999999876544467999999999999998555


Q ss_pred             ccceecceeec-CccccccccceeeccccccCCCCeeeCCEEEEEEEEE
Q 041280           90 HNDKIARTWIR-PSIGARGWLQFVELSYLNKASNGLLVHDVCIVEAEVS  137 (145)
Q Consensus        90 ~~~~~~~~~F~-~~~~~wG~~~fi~~~~L~~~~~~fl~dd~l~i~~~i~  137 (145)
                      .........|. ..+.+|||.+||++++|+++  .+++||+|+|+|+|.
T Consensus        80 ~~~~~~~~~~~~~~~~~~G~~~fi~~~~l~~~--~~~~~d~l~i~~~v~  126 (126)
T cd00121          80 SLSKSFTHVFFSEKGSGWGFPKFISWDDLEDS--YYLVDDSLTIEVEVK  126 (126)
T ss_pred             cceEeccCCcCCCCCCCCChHHeeEHHHhccC--CcEECCEEEEEEEEC
Confidence            54444444453 46789999999999999983  349999999999984

Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma

>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.95  E-value=1.5e-26  Score=158.97  Aligned_cols=130  Identities=23%  Similarity=0.314  Sum_probs=106.9

Q ss_pred             cCCCCEEEEEEccccccc-----C--ceEecCcEE--EcceEEEEEEEeCCCCCCCCCeEEEEEEecCCCCCC-CCceEE
Q 041280            6 SASICKYVWKIENFSKLE-----A--KFYESEVFV--AGDQKWKIRLYPKGQGQRTGSHLSMFLALADSSTVT-RDFKIC   75 (145)
Q Consensus         6 ~~~~~~~~w~I~nfs~~~-----~--~~~~S~~f~--~~g~~W~l~~~p~g~~~~~~~~ls~yL~~~~~~~~~-~~~~~~   75 (145)
                      ....+.+.|+|+||+++.     +  ..++||+|.  .+||+|+|++||||++.+.+.|||+|+++++++.++ ..|++.
T Consensus        15 ~~~~g~fiWkI~~fs~~~~~a~~~~~~~i~Sp~Fyt~~~GYk~~l~~ylnG~g~~~g~~LSly~~l~~Ge~D~~L~WPf~   94 (164)
T cd03778          15 STYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFN   94 (164)
T ss_pred             cccCCEEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEecCCcCcccCCcee
Confidence            345799999999999986     2  378999995  359999999999999887778999999999988665 789999


Q ss_pred             EEEEEEEEcCCCCccccee-----cceeec----CccccccccceeeccccccCCCCeeeCCEEEEEEEE
Q 041280           76 VRYTLRIRDQLQSKHNDKI-----ARTWIR----PSIGARGWLQFVELSYLNKASNGLLVHDVCIVEAEV  136 (145)
Q Consensus        76 ~~f~~~l~n~~~~~~~~~~-----~~~~F~----~~~~~wG~~~fi~~~~L~~~~~~fl~dd~l~i~~~i  136 (145)
                      .+++|+|++|.+.+++...     ....|.    ..+.+||++.||++++|.++ .+||+||++.|+|.|
T Consensus        95 ~~itl~llDQ~~r~hi~~~~~pd~~~~~f~RP~~~~n~~~G~~~Fv~l~~l~~~-~~Yv~dDtlfIk~~V  163 (164)
T cd03778          95 QKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKXEAK-NSYVRDDAIFIKAIV  163 (164)
T ss_pred             eEEEEEEECCCCCCcceeEEEcCcchHhcCCCCcccccCcCcceEEEhhHcccc-CCcccCCeEEEEEEE
Confidence            9999999999876554211     111352    24668999999999999863 599999999999987

TRAF2 associates with the receptors TNFR-1, TNFR-2, RANK (which mediates differentiation and maturation of osteoclasts) and CD40 (which is important for the proliferation and activation of B cells), among others. It regulates distinct pathways that lead to the activation of nuclear factor-kappaB and Jun NH2-terminal kinases. TRAF2 also indirectly associates with death receptors through its interaction with TRADD (TNFR-associated death domain protein). It is involved in regulating oxidative stress or ROS-induced cell death and in the preconditioning of cells by sublethal stress for protection from subsequent injury. TRAF2 contains a RING finger domain, five z

>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces

Probab=99.95  E-value=1.5e-26  Score=159.92  Aligned_cols=126  Identities=20%  Similarity=0.304  Sum_probs=99.9

Q ss_pred             CCEEEEEEccccccc-----CceEecCcE-EEcceEEEEEEEeCCCCCCCCCeEEEEEEecCCCC-CCCCce-EEEEEEE
Q 041280            9 ICKYVWKIENFSKLE-----AKFYESEVF-VAGDQKWKIRLYPKGQGQRTGSHLSMFLALADSST-VTRDFK-ICVRYTL   80 (145)
Q Consensus         9 ~~~~~w~I~nfs~~~-----~~~~~S~~f-~~~g~~W~l~~~p~g~~~~~~~~ls~yL~~~~~~~-~~~~~~-~~~~f~~   80 (145)
                      +..|.|+|.|||.++     ++.++||+| +++||+|+|++||+|... .++|||+||++.+.+. ...+|+ +.++++|
T Consensus         1 cp~hvwkI~~yS~~~~~~~~g~~i~S~~FysvgGy~w~I~~YPnG~~~-~~~~lSlyL~L~~g~~d~~L~WP~v~a~~t~   79 (167)
T cd03771           1 CPEAVWRVRNFSQLLETTPKGTKIYSPRFYSPEGYAFQVGLYPNGTES-YPGYTGLYFHLCSGENDDVLEWPCPNRQATM   79 (167)
T ss_pred             CCeEEEEEcCchhhhhcCCCCCEEECCCCCccCCeEEEEEEEeCCCCC-CCCcceEEEEEecCCccccccCcceeEEEEE
Confidence            468999999999985     458999998 999999999999999887 6789999999987643 356799 5899999


Q ss_pred             EEEcCCCC----cccce----ec---c-----eeec----------C-------ccccccccceeeccccccCCCCeeeC
Q 041280           81 RIRDQLQS----KHNDK----IA---R-----TWIR----------P-------SIGARGWLQFVELSYLNKASNGLLVH  127 (145)
Q Consensus        81 ~l~n~~~~----~~~~~----~~---~-----~~F~----------~-------~~~~wG~~~fi~~~~L~~~~~~fl~d  127 (145)
                      +|++|.++    .++..    ..   .     ..|+          .       ++.+|||+.||++++|.+  .+||+|
T Consensus        80 ~LlDQ~~~~~~r~~~~~~~~~dp~~~~~~~~~~~~~rP~~~~~~~~~~~~~~~~~~~g~G~~~Fis~~~L~~--r~ylk~  157 (167)
T cd03771          80 TLLDQDPDIQQRMSNQRSFTTDPSMTSSDNGEYFWDRPSKVGSYDTDTNGCTCYRGPGYGWSTFISHSRLRR--RDFLKG  157 (167)
T ss_pred             EEECCCCcccccCcceEEEecCCcccccccccccccCCccccccccccccccccccCccccccceeHHHhcc--CCCCcC
Confidence            99999742    12111    00   0     0021          1       345899999999999998  579999


Q ss_pred             CEEEEEEEEE
Q 041280          128 DVCIVEAEVS  137 (145)
Q Consensus       128 d~l~i~~~i~  137 (145)
                      |+|.|+++++
T Consensus       158 dtl~i~~~~~  167 (167)
T cd03771         158 DDLIILLDFE  167 (167)
T ss_pred             CEEEEEEEeC
Confidence            9999999873

They are expressed in renal and intestinal brush border membranes, leukocytes, and cancer cells, and are capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. Meprin proteases are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. Despite their similarity, the two subunits differ in their ability to self-associate, in proteolytic processing during biosynthesis and in substrate specificity. Both subunits are synthesized as membrane spanning proteins, however, the alpha subunit is cleaved during biosynthesis and loses its transmembrane domain. Meprin beta forms homodimers or heterotetramers while meprin alpha oligomerizes into large complexes co

>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []

Probab=99.93  E-value=1.7e-25  Score=146.76  Aligned_cols=116  Identities=28%  Similarity=0.542  Sum_probs=95.3

Q ss_pred             Eccccccc-Cc-eEecCcEEEcceEEEEEEEeCCCCCCCCCeEEEEEEecCCCCCC-CCceEEEEEEEEEEcCCCCcccc
Q 041280           16 IENFSKLE-AK-FYESEVFVAGDQKWKIRLYPKGQGQRTGSHLSMFLALADSSTVT-RDFKICVRYTLRIRDQLQSKHND   92 (145)
Q Consensus        16 I~nfs~~~-~~-~~~S~~f~~~g~~W~l~~~p~g~~~~~~~~ls~yL~~~~~~~~~-~~~~~~~~f~~~l~n~~~~~~~~   92 (145)
                      |+|||++. ++ ...|+.|.++|++|+|.+||+++    .+++++||+|..++... .+|++.++++++++++.++....
T Consensus         1 i~nfs~l~~~~~~~~s~~~~~~g~~W~l~~~~~~~----~~~l~~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~   76 (119)
T PF00917_consen    1 IKNFSKLKEGEEYSSSFVFSHGGYPWRLKVYPKGN----GKYLSVYLHCDKGENDSDLEWSIEAEFRFRLLNQNGKSISK   76 (119)
T ss_dssp             ETTGGGHHTSEEEEEEEESSTTSEEEEEEEETTES----TTEEEEEEEEECSTTGGGSSSSEEEEEEEEEE-TTSCEEEE
T ss_pred             CcccceEeCCCcEECCCeEEECCEEEEEEEEeCCC----cCcEEEEEEEeecccccccceeeeEEEEEEEecCCCCccee
Confidence            78999998 33 34458888999999999999996    47999999999875443 68999999999999998886322


Q ss_pred             eecceeecCccccccccceeeccccccCCCCeeeCCEEEEEEEEEE
Q 041280           93 KIARTWIRPSIGARGWLQFVELSYLNKASNGLLVHDVCIVEAEVSV  138 (145)
Q Consensus        93 ~~~~~~F~~~~~~wG~~~fi~~~~L~~~~~~fl~dd~l~i~~~i~v  138 (145)
                      ....+.|+ ...+|||.+||++++|.++  .|++||+|+|+|+|+|
T Consensus        77 ~~~~~~F~-~~~~~g~~~fi~~~~l~~~--~fl~dd~l~ie~~v~I  119 (119)
T PF00917_consen   77 RIKSHSFN-NPSSWGWSSFISWEDLEDP--YFLVDDSLTIEVEVKI  119 (119)
T ss_dssp             EEECEEEC-TTSEEEEEEEEEHHHHTTC--TTSBTTEEEEEEEEEE
T ss_pred             eeeeeEEe-eecccchhheeEHHHhCcc--CCeECCEEEEEEEEEC
Confidence            22247787 5588999999999999984  3999999999999986

Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....

>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides

Probab=99.87  E-value=1.7e-21  Score=133.09  Aligned_cols=126  Identities=17%  Similarity=0.223  Sum_probs=100.8

Q ss_pred             CCEEEEEEccccccc-----CceEecCcE-EEcceEEEEEEEeCCCCCCCCCeEEEEEEecCCCCC-CCCceEE-EEEEE
Q 041280            9 ICKYVWKIENFSKLE-----AKFYESEVF-VAGDQKWKIRLYPKGQGQRTGSHLSMFLALADSSTV-TRDFKIC-VRYTL   80 (145)
Q Consensus         9 ~~~~~w~I~nfs~~~-----~~~~~S~~f-~~~g~~W~l~~~p~g~~~~~~~~ls~yL~~~~~~~~-~~~~~~~-~~f~~   80 (145)
                      +..+.|+|+||+++.     +..++||+| +..||+.++.+||||.+.+ +.|||+|+++++++.+ -..||+. -+++|
T Consensus         1 cp~~iWkI~~fs~~~~~~~~~~~i~Sp~FYt~~GYkl~l~~ylnG~g~~-~~~lsl~~~lm~Ge~D~~L~WPf~~~qit~   79 (167)
T cd03782           1 CPEHIWHIRNFTQLLATTPPNGKIYSPPFLSSTGYSFQVGLYLNGTDDY-PGNLAIYLHLTSGPNDDQLQWPCPWQQATM   79 (167)
T ss_pred             CCcEEEEeCcHHHHHHhcCCCceEECCCCcCccCceeEEEEEecCCCCC-CCEEEEEEEEeccCCCccccCCCcCCeEEE
Confidence            467899999999986     457999999 4589999999999998875 6799999999998743 5689999 89999


Q ss_pred             EEEcCCCC----cccce--e-------c-ceee--cC-----------------ccccccccceeeccccccCCCCeeeC
Q 041280           81 RIRDQLQS----KHNDK--I-------A-RTWI--RP-----------------SIGARGWLQFVELSYLNKASNGLLVH  127 (145)
Q Consensus        81 ~l~n~~~~----~~~~~--~-------~-~~~F--~~-----------------~~~~wG~~~fi~~~~L~~~~~~fl~d  127 (145)
                      .|++|.++    .++..  .       . ...|  +.                 ++.++|++.||++++|..  +.||+|
T Consensus        80 ~LlDQ~~d~~~r~~~~~~~t~~P~~~s~~n~~f~w~rP~kvg~~~~~~~~~~~~r~~~~G~~~Fish~~L~~--r~yikd  157 (167)
T cd03782          80 MLLDQHPDIRQRMSNQRSVTTDPNMTSTDSDEYFWDDPRKVGSEVTDTDGSTFYRGPGYGTSAFITHLRLRS--RDFIKG  157 (167)
T ss_pred             EEEcCCCchhhccceeeeEEecCCcccccCccceecCCcccCcccccccccccccccccCccceeeHHHHhh--cCcccC
Confidence            99999752    12211  0       1 1134  21                 168899999999999998  789999


Q ss_pred             CEEEEEEEEE
Q 041280          128 DVCIVEAEVS  137 (145)
Q Consensus       128 d~l~i~~~i~  137 (145)
                      |++.|-++++
T Consensus       158 D~ifi~~~~e  167 (167)
T cd03782         158 DDVIFLLTME  167 (167)
T ss_pred             CeEEEEEecC
Confidence            9999988763

They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The beta subunit is a type I membrane protein, which forms homodimers or heterotetramers (alpha2beta2 or alpha3beta). Meprin beta shows preference for acidic residues at the P1 and P1' sites of its substrate. Among its best substrates are growth factors and chemokines such as gastrin and osteopontin. Both alpha and beta subunits contain a catalytic astacin (M12 family) protease domain followed by the adhesion or interaction domains MAM, MATH and AM. The MATH and MAM domains provide symmetrical intersubunit disulfide bonds necessary for the dimerization of meprin subunits. The MATH domain may also be required for f

>smart00061 MATH meprin and TRAF homology

Probab=99.85  E-value=1.3e-20  Score=118.81  Aligned_cols=93  Identities=22%  Similarity=0.361  Sum_probs=78.6

Q ss_pred             EEEEEccccccc-CceEecCcEEEcceEEEEEEEeCCCCCCCCCeEEEEEEecCCCCCCCCceEEEEEEEEEEcCCCCcc
Q 041280           12 YVWKIENFSKLE-AKFYESEVFVAGDQKWKIRLYPKGQGQRTGSHLSMFLALADSSTVTRDFKICVRYTLRIRDQLQSKH   90 (145)
Q Consensus        12 ~~w~I~nfs~~~-~~~~~S~~f~~~g~~W~l~~~p~g~~~~~~~~ls~yL~~~~~~~~~~~~~~~~~f~~~l~n~~~~~~   90 (145)
                      ++|.|+||+++. ++.++|++|.++|++|+|.+||+      .+|+|+||.|.+....+.+|++.|+|+++|+++.+++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~S~~f~~~g~~W~i~~~p~------~~~lsl~L~~~~~~~~~~~w~v~a~~~~~l~~~~~~~~   75 (95)
T smart00061        2 LSHTFKNVSRLEEGESYFSPSEEHFNIPWRLKIYRK------NGFLSLYLHCEKEECDSRKWSIEAEFTLKLVSQNGKSL   75 (95)
T ss_pred             ceeEEEchhhcccCceEeCChhEEcCceeEEEEEEc------CCEEEEEEEeCCCcCCCCCeEEEEEEEEEEEeCCCCEE
Confidence            579999999985 78899999999999999999999      37999999998765444589999999999999987654


Q ss_pred             cceecceeecCcccccccccee
Q 041280           91 NDKIARTWIRPSIGARGWLQFV  112 (145)
Q Consensus        91 ~~~~~~~~F~~~~~~wG~~~fi  112 (145)
                       .+...+.|.. ..+|||.+||
T Consensus        76 -~~~~~~~F~~-~~~~G~~~fi   95 (95)
T smart00061       76 -SKKDKHVFEK-PSGWGFSKFI   95 (95)
T ss_pred             -eeeeeEEEcC-CCccceeeEC
Confidence             3345677875 7889999885

>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides

Probab=99.85  E-value=7e-21  Score=130.67  Aligned_cols=127  Identities=17%  Similarity=0.306  Sum_probs=99.1

Q ss_pred             CCEEEEEEccccccc-----CceEecCcEEE-cceEEEEEEEeCCCCC-CCCCeEEEEEEecCCCCC-CCCceE-EEEEE
Q 041280            9 ICKYVWKIENFSKLE-----AKFYESEVFVA-GDQKWKIRLYPKGQGQ-RTGSHLSMFLALADSSTV-TRDFKI-CVRYT   79 (145)
Q Consensus         9 ~~~~~w~I~nfs~~~-----~~~~~S~~f~~-~g~~W~l~~~p~g~~~-~~~~~ls~yL~~~~~~~~-~~~~~~-~~~f~   79 (145)
                      +..+.|+|.||+++.     +..++||+|.. .||+.+|++||+|... +.+.|+|+|+++++++.+ -..|++ .-+++
T Consensus         1 cp~~iWkI~nfs~~~~~a~~~~~i~Sp~Fyt~~GYk~~l~~~lng~~~~~~g~~lSl~~~lm~Ge~D~~L~WP~~~~~it   80 (167)
T cd03783           1 CPNAVWRVRNFSQILENTTKGDVLQSPRFYSPEGYGYGVSLYPLSNESDYSGNYTGLYFHLCSGENDAVLEWPALNRQAI   80 (167)
T ss_pred             CCceeEEECcHHHHHHhCcCCCeEECCCCccCCCceEEEEEEecCCCCCCCCCEEEEEEEEecccCCCcccCCCcCCEEE
Confidence            357899999999975     45799999965 5999999999999874 556799999999998743 568995 56899


Q ss_pred             EEEEcCCCC----cccce-----e--cce------eecC--------------ccccccccceeeccccccCCCCeeeCC
Q 041280           80 LRIRDQLQS----KHNDK-----I--ART------WIRP--------------SIGARGWLQFVELSYLNKASNGLLVHD  128 (145)
Q Consensus        80 ~~l~n~~~~----~~~~~-----~--~~~------~F~~--------------~~~~wG~~~fi~~~~L~~~~~~fl~dd  128 (145)
                      |.|++|+++    .++.+     .  ...      .|..              ++.++||+.||++++|..  .+||+||
T Consensus        81 l~llDQ~~~~~~r~~~~~sf~~d~~~~~~~~~~~~~f~rP~~~~~~~~~~~~~~~~gfG~~~Fish~~L~~--r~yikdD  158 (167)
T cd03783          81 ITVLDQDPDVRLRMSSSRSFTTDKSQTSSAINGTLRWDRPSRVGTYDTSCDCFRGIDFGWSTFISHSQLRR--RSFLKND  158 (167)
T ss_pred             EEEEcCCcchhhccccceeeecCCCcccccccccccccCCcccccccccccccCCcccccccceeHHHHhh--CCcccCC
Confidence            999999752    12210     0  000      1321              356899999999999998  7999999


Q ss_pred             EEEEEEEEE
Q 041280          129 VCIVEAEVS  137 (145)
Q Consensus       129 ~l~i~~~i~  137 (145)
                      +|.|.++++
T Consensus       159 tlfI~~~~~  167 (167)
T cd03783         159 DLIIFVDFE  167 (167)
T ss_pred             eEEEEEecC
Confidence            999998863

They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The alpha subunit is synthesized as a membrane spanning protein, however, it is cleaved during biosynthesis and loses its transmembrane domain. It oligomerizes into large complexes, containing 10-100 subunits (dimers that associate noncovalently), which are secreted as latent proteases and can move through extracellular spaces in a nondestructive manner. This allows delivery of the concentrated protease to sites containing activating enzymes, such as sites of inflammation, infection or cancerous growth. Meprin alpha shows preference for small or hydrophobic residues at the P1 and P1' sites of its substrate. Both

>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=99.70  E-value=2.5e-17  Score=133.10  Aligned_cols=132  Identities=21%  Similarity=0.393  Sum_probs=109.8

Q ss_pred             cCCCCEEEEEEcccccccCceEecCcEEEcceEEEEEEEeCCCCCCCCCeEEEEEEecCCCC--CC-CCceEEEEEEEEE
Q 041280            6 SASICKYVWKIENFSKLEAKFYESEVFVAGDQKWKIRLYPKGQGQRTGSHLSMFLALADSST--VT-RDFKICVRYTLRI   82 (145)
Q Consensus         6 ~~~~~~~~w~I~nfs~~~~~~~~S~~f~~~g~~W~l~~~p~g~~~~~~~~ls~yL~~~~~~~--~~-~~~~~~~~f~~~l   82 (145)
                      +...-++.|+|++++++.+ .++||+|.+||++|+|.++|.|+...   -+||||+....+.  .+ ..|.|+|+|.|.+
T Consensus        35 e~~~~sftW~vk~wsel~~-k~~Sp~F~vg~~twki~lfPqG~nq~---~~sVyLe~~pqe~e~~~gk~~~ccaqFaf~I  110 (1089)
T COG5077          35 ELLEMSFTWKVKRWSELAK-KVESPPFSVGGHTWKIILFPQGNNQC---NVSVYLEYEPQELEETGGKYYDCCAQFAFDI  110 (1089)
T ss_pred             HHhhcccceecCChhhhhh-hccCCcccccCeeEEEEEecccCCcc---ccEEEEEeccchhhhhcCcchhhhhheeeec
Confidence            4455689999999999975 57899999999999999999997654   3999999876431  12 2499999999999


Q ss_pred             EcCCCCcc-cceecceeecCccccccccceeeccccccCCC---CeeeCCEEEEEEEEEEEee
Q 041280           83 RDQLQSKH-NDKIARTWIRPSIGARGWLQFVELSYLNKASN---GLLVHDVCIVEAEVSVLGI  141 (145)
Q Consensus        83 ~n~~~~~~-~~~~~~~~F~~~~~~wG~~~fi~~~~L~~~~~---~fl~dd~l~i~~~i~v~~~  141 (145)
                      -|+..+.. ....+.|+|+....+|||.+|+.+..|..|+.   .|+.+|++.|.+.|+|+++
T Consensus       111 s~p~~pti~~iN~sHhrFs~~~tDwGFt~f~dL~kl~~psp~~Ppfleeg~l~ItvyVRvlkd  173 (1089)
T COG5077         111 SNPKYPTIEYINKSHHRFSMESTDWGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVRVLKD  173 (1089)
T ss_pred             CCCCCCchhhhhcccccccccccccchhhhhhhhhhcCCCCCCCCcccCCeEEEEEEEEEEeC
Confidence            99887542 24567789998889999999999999988754   4788999999999999876

>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=98.92  E-value=2.5e-08  Score=75.16  Aligned_cols=120  Identities=29%  Similarity=0.506  Sum_probs=95.9

Q ss_pred             EEEEEcccccccCceEecCcEEEcceEEEEEEEeCCCCCCCCCeEEEEEEecCCCCCCCCceEEEEEEEEEEcCCCCcc-
Q 041280           12 YVWKIENFSKLEAKFYESEVFVAGDQKWKIRLYPKGQGQRTGSHLSMFLALADSSTVTRDFKICVRYTLRIRDQLQSKH-   90 (145)
Q Consensus        12 ~~w~I~nfs~~~~~~~~S~~f~~~g~~W~l~~~p~g~~~~~~~~ls~yL~~~~~~~~~~~~~~~~~f~~~l~n~~~~~~-   90 (145)
                      +.|.+.+++... ..++|..|..+|..|++.+||.|+      +++.|+.+....    +|.+.+.+++.++|+...+. 
T Consensus         6 ~~~~~~~~~~~~-l~~ys~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~----~~~~~~~~~l~v~n~~~~~~~   74 (297)
T KOG1987|consen    6 FTWVISNFSSVG-LVIYSNGFVKGGCKWRLSAYPKGN------YLSLTLSVSDSP----GWERYAKLRLTVVNQKSEKYL   74 (297)
T ss_pred             cceeeccCcchh-hhccccceeecCceEEEEEecCCC------EEEEEEEeccCC----CcceeEEEEEEEccCCCccee
Confidence            339999998886 667899999999999999999984      789999988642    79999999999999988754 


Q ss_pred             cce-ecceeecCc--cccccccceeeccccccCCCCeeeCCEEEEEEEEEEEeec
Q 041280           91 NDK-IARTWIRPS--IGARGWLQFVELSYLNKASNGLLVHDVCIVEAEVSVLGIS  142 (145)
Q Consensus        91 ~~~-~~~~~F~~~--~~~wG~~~fi~~~~L~~~~~~fl~dd~l~i~~~i~v~~~~  142 (145)
                      ... .....|...  ...||+..+++...+.++..||++++.+++-....|.+..
T Consensus        75 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~V~~~~  129 (297)
T KOG1987|consen   75 STVEEGFSWFRFNKVLKEWGFGKMLPLTLLIDCSNGFLVAHKLVLVARSEVFEAM  129 (297)
T ss_pred             eeeeeeEEeccccccccccCcccccChHHhhcccCcEEEcCceEEEeeecceeee
Confidence            322 233334332  5789999999999999988999999888887777666543

>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=98.65  E-value=3.7e-08  Score=85.55  Aligned_cols=128  Identities=19%  Similarity=0.185  Sum_probs=102.7

Q ss_pred             EEEEEcccccccCceEecCcEEEcceEEEEEEEeCCCCCCCCCeEEEEEEecCCCCCCCCceEEEEEEEEEEcCCCCc-c
Q 041280           12 YVWKIENFSKLEAKFYESEVFVAGDQKWKIRLYPKGQGQRTGSHLSMFLALADSSTVTRDFKICVRYTLRIRDQLQSK-H   90 (145)
Q Consensus        12 ~~w~I~nfs~~~~~~~~S~~f~~~g~~W~l~~~p~g~~~~~~~~ls~yL~~~~~~~~~~~~~~~~~f~~~l~n~~~~~-~   90 (145)
                      .+|...+..++.. ...||.|..++.+|++.+.|+++.   ...+++|+.+...... ..|.+.+.+.+.+.|..++. .
T Consensus        29 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~s~~~~~~~~v~~~~~~~~~  103 (1093)
T KOG1863|consen   29 TTIDGIDDKSLLY-RALSSNFGAGATKWKILIAPKVNS---LQSTRKKLEVMPSQSL-KSWSCGAQAVLRVKNTIDNLPD  103 (1093)
T ss_pred             ccccCcCcchhhh-HhcCccccccccceeeeeccccCc---ccceeEEeeeccCCCC-cceEecchhhhccccCCCCchh
Confidence            3355544444433 667999999999999999999973   3679999999976654 45999999999999933332 2


Q ss_pred             cceecceeecCccccccccceeeccccccCCCCeeeCCEEEEEEEEEEEeeccC
Q 041280           91 NDKIARTWIRPSIGARGWLQFVELSYLNKASNGLLVHDVCIVEAEVSVLGISKA  144 (145)
Q Consensus        91 ~~~~~~~~F~~~~~~wG~~~fi~~~~L~~~~~~fl~dd~l~i~~~i~v~~~~~~  144 (145)
                      ......|.|.....+||+..|+.++++..|..+|+.+|++.++++|++...++.
T Consensus       104 ~~~~~~h~~~~~~~dwg~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~  157 (1093)
T KOG1863|consen  104 PEKAIHHVFTADERDWGFSCFSTSSDIRKPEDGYVRNGLEKLEKRVRVEQPTSL  157 (1093)
T ss_pred             hhhhhhhcccccccchhhccchhHhhccCcccccccccceeeeeeeeeecCCcc
Confidence            345567889888899999999999999999999999999999999999776653

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=97.68  E-value=3.1e-05  Score=60.77  Aligned_cols=80  Identities=23%  Similarity=0.362  Sum_probs=68.2

Q ss_pred             cCCCCEEEEEEccccccc-------CceEecCcEE--EcceEEEEEEEeCCCCCCCCCeEEEEEEecCCCC-CCCCceEE
Q 041280            6 SASICKYVWKIENFSKLE-------AKFYESEVFV--AGDQKWKIRLYPKGQGQRTGSHLSMFLALADSST-VTRDFKIC   75 (145)
Q Consensus         6 ~~~~~~~~w~I~nfs~~~-------~~~~~S~~f~--~~g~~W~l~~~p~g~~~~~~~~ls~yL~~~~~~~-~~~~~~~~   75 (145)
                      ....+.+.|+|.++...+       +..++|+.|.  ..||+.+..+|-||++.+.+-++|+|+.+...+. ....|+++
T Consensus       276 ~~~~g~~iwki~~~~~~~~e~~~~~~~~~~S~~f~t~~~Gyk~~~~~~lng~g~~~~~~~s~~~~~~~ge~d~~l~wpf~  355 (391)
T KOG0297|consen  276 RSYDGTLIWKIPDYGRKKQEAVAGATLSLFSPAFYTSKYGYKLCARIYLNGDGTGKGTHLSLYFVVMRGEYDALLPWPFR  355 (391)
T ss_pred             hccCCEEEEEecchhhhhHHHHhccCccccccccccccccHHHHhHhhhcCCCCCCcceeeeeeeecccCcccccccCCC
Confidence            345789999999995543       4578899995  5799999999999998888889999999998764 35789999


Q ss_pred             EEEEEEEEcC
Q 041280           76 VRYTLRIRDQ   85 (145)
Q Consensus        76 ~~f~~~l~n~   85 (145)
                      -+.++.+++|
T Consensus       356 ~~v~~~l~dq  365 (391)
T KOG0297|consen  356 QKVTLMLLDQ  365 (391)
T ss_pred             CceEEEEecc
Confidence            9999999999

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	145
2foj_A	155	Ubiquitin carboxyl-terminal hydrolase 7; MATH doma	4e-30
3ivv_A	145	Speckle-type POZ protein; protein binding, nucleus	6e-26
1ca9_A	192	TRAF2, protein (TNF receptor associated factor 2);	7e-19
1d00_A	168	Tumor necrosis factor receptor associated protein	8e-19
1lb6_A	160	TNF receptor-associated factor 6; TRAF6-CD40 compl	1e-17
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	3e-17
2gkw_A	192	TNF receptor-associated factor 3; CD40, NF-KB sign	2e-16
1flk_A	228	TNF receptor associated factor 3; TNF signaling, T	2e-16
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	3e-16

>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A Length = 155

 Score =  105 bits (264), Expect = 4e-30
 Identities = 22/130 (16%), Positives = 43/130 (33%), Gaps = 4/130 (3%)

Query: 11  KYVWKIENFSKLEAKFYESEVFVAGDQKWKIRLYPKGQGQRT-GSHLSMFLALADSSTVT 69
            + + +E FS+L      S      +  WKI + P+    R     +  FL   ++ + +
Sbjct: 20  TFQFTVERFSRLSESVL-SPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQC-NAESDS 77

Query: 70  RDFKICVRYTLRIRDQL-QSKHNDKIARTWIRPSIGARGWLQFVELSYLNKASNGLLVHD 128
             +    +  L+I +     K   +             G+  F+  S +     G +  D
Sbjct: 78  TSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDD 137

Query: 129 VCIVEAEVSV 138
               E  V  
Sbjct: 138 KVTFEVFVQA 147

>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A Length = 145

 Score = 94.6 bits (235), Expect = 6e-26
 Identities = 33/137 (24%), Positives = 59/137 (43%), Gaps = 11/137 (8%)

Query: 10  CKYVWKIENFSKLEA---KFYESEVFVAG---DQKWKIRLYPKGQGQRTGSHLSMFLALA 63
             Y+W I NFS       +  +S  F +G     KW +R+ PKG  + +  +LS++L L 
Sbjct: 11  FSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLV 70

Query: 64  DSSTVTRDFKICVRYTLRIRDQLQSK-HNDKIARTWIRPSIGARGWLQFVELSYLNKASN 122
                    ++  ++   I +    +    +  R +        G+ +F+   +L   +N
Sbjct: 71  SCP----KSEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEAN 126

Query: 123 GLLVHDVCIVEAEVSVL 139
           GLL  D   +  EVSV+
Sbjct: 127 GLLPDDKLTLFCEVSVV 143

>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A Length = 192

 Score = 77.7 bits (191), Expect = 7e-19
 Identities = 34/150 (22%), Positives = 59/150 (39%), Gaps = 20/150 (13%)

Query: 11  KYVWKIENFSKL-------EAKFYESEVFVAGDQ--KWKIRLYPKGQGQRTGSHLSMFLA 61
            ++WKI +F++              S  F       K  +R+Y  G G   G+HLS+F  
Sbjct: 44  VFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFV 103

Query: 62  LADSST-VTRDFKICVRYTLRIRDQLQSKH------NDKIARTWIRPSIG---ARGWLQF 111
           +          +    + TL + DQ   +H       D  + ++ RP      A G   F
Sbjct: 104 VMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLF 163

Query: 112 VELSYLNKASNGLLVHDVCIVEAEVSVLGI 141
             +S + +A N  +  D   ++A V + G+
Sbjct: 164 CPVSKM-EAKNSYVRDDAIFIKAIVDLTGL 192

>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A Length = 168

 Score = 77.0 bits (189), Expect = 8e-19
 Identities = 34/150 (22%), Positives = 59/150 (39%), Gaps = 20/150 (13%)

Query: 11  KYVWKIENFSKL-------EAKFYESEVFVAGDQ--KWKIRLYPKGQGQRTGSHLSMFLA 61
            ++WKI +F++              S  F       K  +R+Y  G G   G+HLS+F  
Sbjct: 20  VFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFV 79

Query: 62  LADSST-VTRDFKICVRYTLRIRDQLQSKH------NDKIARTWIRPSIG---ARGWLQF 111
           +          +    + TL + DQ   +H       D  + ++ RP      A G   F
Sbjct: 80  VMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLF 139

Query: 112 VELSYLNKASNGLLVHDVCIVEAEVSVLGI 141
             +S + +A N  +  D   ++A V + G+
Sbjct: 140 CPVSKM-EAKNSYVRDDAIFIKAIVDLTGL 168

>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A Length = 160

 Score = 73.4 bits (180), Expect = 1e-17
 Identities = 33/154 (21%), Positives = 54/154 (35%), Gaps = 30/154 (19%)

Query: 11  KYVWKIENFSKL-------EAKFYESEVFVAGDQ--KWKIRLYPKGQGQ-RTGSHLSMFL 60
            Y+WKI NF          +     S  F  G    K  +RL+ +     R  +++S+F+
Sbjct: 6   IYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFV 65

Query: 61  ALADS---STVTRDFKICVRYTLRIRDQLQSKHNDKIART---------WIRPSIGAR-- 106
                   S +   F+      L I DQ ++                  + RP+I     
Sbjct: 66  HTMQGEYDSHLPWPFQ--GTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPK 123

Query: 107 --GWLQFVELSYLNKASNGLLVHDVCIVEAEVSV 138
             G++ F+ L  L       +  D  +V  EVS 
Sbjct: 124 GFGYVTFMHLEALR--QRTFIKDDTLLVRCEVST 155

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312

 Score = 75.3 bits (185), Expect = 3e-17
 Identities = 33/136 (24%), Positives = 58/136 (42%), Gaps = 11/136 (8%)

Query: 10  CKYVWKIENFSKLEA---KFYESEVFVAG---DQKWKIRLYPKGQGQRTGSHLSMFLALA 63
             Y+W I NFS       +  +S  F +G     KW +R+ PKG  + +  +LS++L L 
Sbjct: 7   FSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLV 66

Query: 64  DSSTVTRDFKICVRYTLRIRDQL-QSKHNDKIARTWIRPSIGARGWLQFVELSYLNKASN 122
                    ++  ++   I +   +     +  R +        G+ +F+   +L   +N
Sbjct: 67  SCP----KSEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRGFLLDEAN 122

Query: 123 GLLVHDVCIVEAEVSV 138
           GLL  D   +  EVSV
Sbjct: 123 GLLPDDKLTLFCEVSV 138

>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A Length = 192

 Score = 71.2 bits (174), Expect = 2e-16
 Identities = 32/155 (20%), Positives = 59/155 (38%), Gaps = 26/155 (16%)

Query: 11  KYVWKIENFSKL-------EAKFYESEVFVAGDQ--KWKIRLYPKGQGQRTGSHLSMFLA 61
             +WKI ++ +        +     S+ F  G    K   R+Y  G G   G+HLS+F  
Sbjct: 41  VLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFV 100

Query: 62  LADS---STVTRDFKICVRYTLRIRDQLQSKHN-------DKIARTWIRPSIG---ARGW 108
           +      + +   FK   + TL + DQ  S+ +       D  + ++ +P+     A G 
Sbjct: 101 IMRGEYDALLPWPFK--QKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGC 158

Query: 109 LQFVELSYLNKASNGLLVHDVCIVEAEVSVLGISK 143
             FV  + L   +   +  D   ++  V    +  
Sbjct: 159 PVFVAQTVLE--NGTYIKDDTIFIKVIVDTSDLPD 191

>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A Length = 228

 Score = 71.7 bits (175), Expect = 2e-16
 Identities = 32/155 (20%), Positives = 59/155 (38%), Gaps = 26/155 (16%)

Query: 11  KYVWKIENFSKL-------EAKFYESEVFVAGDQ--KWKIRLYPKGQGQRTGSHLSMFLA 61
             +WKI ++ +        +     S+ F  G    K   R+Y  G G   G+HLS+F  
Sbjct: 77  VLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFV 136

Query: 62  LADS---STVTRDFKICVRYTLRIRDQLQSKHN-------DKIARTWIRPSIG---ARGW 108
           +      + +   FK   + TL + DQ  S+ +       D  + ++ +P+     A G 
Sbjct: 137 IMRGEYDALLPWPFK--QKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGC 194

Query: 109 LQFVELSYLNKASNGLLVHDVCIVEAEVSVLGISK 143
             FV  + L   +   +  D   ++  V    +  
Sbjct: 195 PVFVAQTVLE--NGTYIKDDTIFIKVIVDTSDLPD 227

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522

 Score = 73.1 bits (179), Expect = 3e-16
 Identities = 22/130 (16%), Positives = 43/130 (33%), Gaps = 4/130 (3%)

Query: 11  KYVWKIENFSKLEAKFYESEVFVAGDQKWKIRLYPKGQGQRTG-SHLSMFLALADSSTVT 69
            + + +E FS+L      S      +  WKI + P+    R     +  FL   ++ + +
Sbjct: 32  TFQFTVERFSRLSESVL-SPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQ-CNAESDS 89

Query: 70  RDFKICVRYTLRIRDQL-QSKHNDKIARTWIRPSIGARGWLQFVELSYLNKASNGLLVHD 128
             +    +  L+I +     K   +             G+  F+  S +     G +  D
Sbjct: 90  TSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDD 149

Query: 129 VCIVEAEVSV 138
               E  V  
Sbjct: 150 KVTFEVFVQA 159

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	145
2foj_A	155	Ubiquitin carboxyl-terminal hydrolase 7; MATH doma	100.0
3ivv_A	145	Speckle-type POZ protein; protein binding, nucleus	100.0
4gjh_A	178	TNF receptor-associated factor 5; TRAF domain, imm	100.0
1ca9_A	192	TRAF2, protein (TNF receptor associated factor 2);	99.97
1d00_A	168	Tumor necrosis factor receptor associated protein	99.97
4ghu_A	198	TNF receptor-associated factor 3; alpha/beta, inna	99.97
1lb6_A	160	TNF receptor-associated factor 6; TRAF6-CD40 compl	99.97
2gkw_A	192	TNF receptor-associated factor 3; CD40, NF-KB sign	99.97
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	99.97
1flk_A	228	TNF receptor associated factor 3; TNF signaling, T	99.96
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	99.96
4gwm_A	592	Meprin A subunit beta; mulidomain structure, hydro	99.68

>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A

Probab=100.00  E-value=4.8e-36  Score=205.43  Aligned_cols=137  Identities=15%  Similarity=0.202  Sum_probs=116.5

Q ss_pred             CCCCEEEEEEcccccccCceEecCcEEEcceEEEEEEEeCCCCC-CCCCeEEEEEEecCCCCCCCCceEEEEEEEEEEcC
Q 041280            7 ASICKYVWKIENFSKLEAKFYESEVFVAGDQKWKIRLYPKGQGQ-RTGSHLSMFLALADSSTVTRDFKICVRYTLRIRDQ   85 (145)
Q Consensus         7 ~~~~~~~w~I~nfs~~~~~~~~S~~f~~~g~~W~l~~~p~g~~~-~~~~~ls~yL~~~~~~~~~~~~~~~~~f~~~l~n~   85 (145)
                      +..++++|+|+|||.++ +.++|++|.++|++|+|++||+|+.. +..+|||+||+|... ..+.+|++.|+|+|+|+||
T Consensus        16 ~~~~~~~w~I~nfS~~~-~~~~S~~f~~gg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~-~~~~~w~v~a~~~l~l~~~   93 (155)
T 2foj_A           16 RSEATFQFTVERFSRLS-ESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE-SDSTSWSCHAQAVLKIINY   93 (155)
T ss_dssp             CSEEEEEEEESSGGGCC-SCEECCCEEETTEEEEEEEEEEC------CBEEEEEEEESTT-CCCSSCEEEEEEEEEECCS
T ss_pred             CCCcEEEEEECChhhcC-CceEcCCEEECCccEEEEEEECCCCCCCCCCEEEEEEEeCCC-CCCCCCEEEEEEEEEEEcC
Confidence            45589999999999995 77899999999999999999999765 356899999999644 3456799999999999999


Q ss_pred             CCCc-ccceecceeecCccccccccceeeccccccCCCCeeeCCEEEEEEEEEEEeeccCC
Q 041280           86 LQSK-HNDKIARTWIRPSIGARGWLQFVELSYLNKASNGLLVHDVCIVEAEVSVLGISKAL  145 (145)
Q Consensus        86 ~~~~-~~~~~~~~~F~~~~~~wG~~~fi~~~~L~~~~~~fl~dd~l~i~~~i~v~~~~~~~  145 (145)
                      .++. +..+...+.|.....+|||++||++++|++|.+|||+||+|+|+|+|+|.+++|.+
T Consensus        94 ~~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~Ie~~V~V~~~tG~~  154 (155)
T 2foj_A           94 RDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHGVA  154 (155)
T ss_dssp             SCGGGCEEEEEEEEEETTBCEEEEEEEEEHHHHTCTTTSSCBTTBEEEEEEEEECCCBSSC
T ss_pred             CCCcceEEeccEEEeCCCCCCEeECCeEEHHHhcCcCCCceECCEEEEEEEEEEeCccccc
Confidence            8875 44455667888667899999999999999888899999999999999999999864

>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A

Probab=100.00  E-value=2.6e-35  Score=199.79  Aligned_cols=134  Identities=24%  Similarity=0.399  Sum_probs=115.5

Q ss_pred             ecccCCCCEEEEEEccccccc---CceEecCcEEEcce---EEEEEEEeCCCCCCCCCeEEEEEEecCCCCCCCCceEEE
Q 041280            3 KLTSASICKYVWKIENFSKLE---AKFYESEVFVAGDQ---KWKIRLYPKGQGQRTGSHLSMFLALADSSTVTRDFKICV   76 (145)
Q Consensus         3 ~~~~~~~~~~~w~I~nfs~~~---~~~~~S~~f~~~g~---~W~l~~~p~g~~~~~~~~ls~yL~~~~~~~~~~~~~~~~   76 (145)
                      .|.+...++++|+|+|||.++   ++.++||+|.++|+   +|+|++||+|+..+..+|||+||+|.+.    ++|+++|
T Consensus         4 ~m~~~~~~~~~w~I~~fs~~~~~~g~~~~S~~F~~gg~~g~~W~i~~yP~G~~~~~~~~lSlyL~l~~~----~~w~v~a   79 (145)
T 3ivv_A            4 GSGKVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC----PKSEVRA   79 (145)
T ss_dssp             -CCCCCEEEEEEEESSGGGCCCCTTCCEECCCEEESGGGCEEEEEEEETTCSSGGGTTEEEEEEEEEEC----SSSEEEE
T ss_pred             CCCcEEEEEEEEEEcCchHHhhcCCCEEECCCcCCCCcCCceEEEEEEcCCCCCCCCCeEEEEEEEcCC----CCCcEEE
Confidence            467788899999999999986   57899999999995   9999999999887667899999999865    4699999


Q ss_pred             EEEEEEEcCCCCccc--ceecceeecCccccccccceeeccccccCCCCeeeCCEEEEEEEEEEEee
Q 041280           77 RYTLRIRDQLQSKHN--DKIARTWIRPSIGARGWLQFVELSYLNKASNGLLVHDVCIVEAEVSVLGI  141 (145)
Q Consensus        77 ~f~~~l~n~~~~~~~--~~~~~~~F~~~~~~wG~~~fi~~~~L~~~~~~fl~dd~l~i~~~i~v~~~  141 (145)
                      +|+|+|+||.+++..  .....+.|. .+.+|||++||++++|+++.++||+||+|+|+|+|+|+++
T Consensus        80 ~f~l~llnq~~~~~~~~~~~~~~~F~-~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~I~~~V~V~~d  145 (145)
T 3ivv_A           80 KFKFSILNAKGEETKAMESQRAYRFV-QGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQD  145 (145)
T ss_dssp             EEEEEEECTTSCEEEEEECSSCEEEE-TTCEEEEEEEEEHHHHHCGGGCSSGGGCEEEEEEEEECC-
T ss_pred             EEEEEEEecCCCceeeecccceEEec-CCCCcCHHHeEEhhhhccccCCcEeCCEEEEEEEEEEEeC
Confidence            999999999987643  223457786 5789999999999999866689999999999999999864

>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus}

Probab=100.00  E-value=1e-33  Score=197.98  Aligned_cols=136  Identities=21%  Similarity=0.303  Sum_probs=113.2

Q ss_pred             cCCCCEEEEEEcccccccC-------ceEecCcEEEc--ceEEEEEEEeCCCCCCCCCeEEEEEEecCCCC-CCCCceEE
Q 041280            6 SASICKYVWKIENFSKLEA-------KFYESEVFVAG--DQKWKIRLYPKGQGQRTGSHLSMFLALADSST-VTRDFKIC   75 (145)
Q Consensus         6 ~~~~~~~~w~I~nfs~~~~-------~~~~S~~f~~~--g~~W~l~~~p~g~~~~~~~~ls~yL~~~~~~~-~~~~~~~~   75 (145)
                      .+..+.|+|+|+|||.+++       ..++||+|.+|  |++|+|++||+|+..+.++|||+||+|.+.+. ...+|+++
T Consensus        20 ~~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~~g~~G~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~d~~l~W~v~   99 (178)
T 4gjh_A           20 ACYSGKLIWKVTDYRVKKREAVEGHTVSVFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFR   99 (178)
T ss_dssp             CCSSSEEEEEECCHHHHHHHHHTTSCCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEBCCTTGGGSCSSCC
T ss_pred             cccceEEEEEECCHHHHHhhhhcCCCcEEECCCeEeCCCCeEEEEEEEECCCCCCCCCEEEEEEEEecCCCCcccCCceE
Confidence            5678999999999999863       27999999999  99999999999988766789999999986542 23579999


Q ss_pred             EEEEEEEEcCCCCc-cccee-----cceeecC----ccccccccceeeccccccCCCCeeeCCEEEEEEEEEEEee
Q 041280           76 VRYTLRIRDQLQSK-HNDKI-----ARTWIRP----SIGARGWLQFVELSYLNKASNGLLVHDVCIVEAEVSVLGI  141 (145)
Q Consensus        76 ~~f~~~l~n~~~~~-~~~~~-----~~~~F~~----~~~~wG~~~fi~~~~L~~~~~~fl~dd~l~i~~~i~v~~~  141 (145)
                      |+|+|+|+||.+++ ++...     ..+.|+.    .+.+|||.+||++++|++|.+|||+||+|+|+|+|+|.+.
T Consensus       100 a~~~l~Lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~wG~~~Fi~~~~L~~~~~~yL~dD~l~I~~~V~i~~~  175 (178)
T 4gjh_A          100 QRVTLMLLDQSGKKNHIVETFKADPNSSSFKRPDGEMNIASGCPRFVSHSTLENSKNTYIKDDTLFLKVAVDLTDL  175 (178)
T ss_dssp             CEEEEEECCTTSSCCCEEEEEECCTTCGGGSCCSSSBCCCEEEEEEEEHHHHHCTTCCSSBTTBEEEEEEECCTTC
T ss_pred             EEEEEEEEcCCCCcceeEEeeccCCccccccCCcccccCCcChhheeEHHHhhccccCcCcCCEEEEEEEEEecCC
Confidence            99999999999764 22221     2356762    3578999999999999998889999999999999987543

>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A

Probab=99.97  E-value=5.2e-33  Score=196.50  Aligned_cols=133  Identities=23%  Similarity=0.339  Sum_probs=109.8

Q ss_pred             CCCCEEEEEEcccccccC-----c--eEecCcEEE--cceEEEEEEEeCCCCCCCCCeEEEEEEecCCCCCC-CCceEEE
Q 041280            7 ASICKYVWKIENFSKLEA-----K--FYESEVFVA--GDQKWKIRLYPKGQGQRTGSHLSMFLALADSSTVT-RDFKICV   76 (145)
Q Consensus         7 ~~~~~~~w~I~nfs~~~~-----~--~~~S~~f~~--~g~~W~l~~~p~g~~~~~~~~ls~yL~~~~~~~~~-~~~~~~~   76 (145)
                      ...++|+|+|+|||.+++     +  .++||+|.+  ||++|+|++||+|++.+.++|||+||++.+.+..+ .+|++.|
T Consensus        40 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~v~~gG~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~~~~~~W~~~a  119 (192)
T 1ca9_A           40 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQ  119 (192)
T ss_dssp             CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred             ccCceEEEEECCHHHHHHHhhcCCCceEECceEEeCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEccCCCCCcCCCceEE
Confidence            578999999999999863     2  589999999  99999999999998766678999999998765433 6899999


Q ss_pred             EEEEEEEcCCCCccccee-----cceeec----CccccccccceeeccccccCCCCeeeCCEEEEEEEEEEEe
Q 041280           77 RYTLRIRDQLQSKHNDKI-----ARTWIR----PSIGARGWLQFVELSYLNKASNGLLVHDVCIVEAEVSVLG  140 (145)
Q Consensus        77 ~f~~~l~n~~~~~~~~~~-----~~~~F~----~~~~~wG~~~fi~~~~L~~~~~~fl~dd~l~i~~~i~v~~  140 (145)
                      +|+|+|+||.++++....     ....|.    ..+.+|||++||++++|++ .+|||+||+|+|+|+|+|.+
T Consensus       120 ~~~l~lldq~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~-~~gyl~dD~l~I~~~V~V~~  191 (192)
T 1ca9_A          120 KVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEA-KNSYVRDDAIFIKAIVDLTG  191 (192)
T ss_dssp             CEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETHHHHS-SCSSCBTTEEEEEEEECCTT
T ss_pred             EEEEEEECCCCCceeeEeeccCCchhhhcCCccCCCCCcChhheeEHHHhhh-ccCCEeCCEEEEEEEEEecC
Confidence            999999999987543221     112354    2357899999999999995 37999999999999998753

>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A

Probab=99.97  E-value=2.5e-32  Score=189.13  Aligned_cols=134  Identities=23%  Similarity=0.330  Sum_probs=109.6

Q ss_pred             cCCCCEEEEEEcccccccC-----c--eEecCcEE--EcceEEEEEEEeCCCCCCCCCeEEEEEEecCCCCCC-CCceEE
Q 041280            6 SASICKYVWKIENFSKLEA-----K--FYESEVFV--AGDQKWKIRLYPKGQGQRTGSHLSMFLALADSSTVT-RDFKIC   75 (145)
Q Consensus         6 ~~~~~~~~w~I~nfs~~~~-----~--~~~S~~f~--~~g~~W~l~~~p~g~~~~~~~~ls~yL~~~~~~~~~-~~~~~~   75 (145)
                      ....++|+|+|+|||.+++     +  .++||+|.  +||++|+|++||+|+..+.++|||+||++.+.+..+ .+|+++
T Consensus        15 ~~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~~~~gG~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~~~~~~w~~~   94 (168)
T 1d00_A           15 STYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFN   94 (168)
T ss_dssp             CCSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred             cccCCEEEEEECCHHHHHHHhhcCCCeEEECCCeecCCCCEEEEEEEEeCCCCCCCCcEEEEEEEEecCCCCccCCCceE
Confidence            3578999999999999862     3  38999996  789999999999998766678999999998765433 689999


Q ss_pred             EEEEEEEEcCCCCcccceec-----ceeecC----ccccccccceeeccccccCCCCeeeCCEEEEEEEEEEEe
Q 041280           76 VRYTLRIRDQLQSKHNDKIA-----RTWIRP----SIGARGWLQFVELSYLNKASNGLLVHDVCIVEAEVSVLG  140 (145)
Q Consensus        76 ~~f~~~l~n~~~~~~~~~~~-----~~~F~~----~~~~wG~~~fi~~~~L~~~~~~fl~dd~l~i~~~i~v~~  140 (145)
                      ++|+|+|+||.+.++.....     .+.|..    .+.+|||++||++++|+++ +|||+||+|+|+|+|+|.+
T Consensus        95 ~~~~l~ll~q~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~G~~~Fi~~~~L~~~-~gyl~dD~l~I~~~V~v~~  167 (168)
T 1d00_A           95 QKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAK-NSYVRDDAIFIKAIVDLTG  167 (168)
T ss_dssp             CCEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETTTTTSS-SSSSBTTEEEEEEEECCTT
T ss_pred             EEEEEEEECCCCCccceeccccCcchhhccCCCcCCCCCcCcceEeEHHHhccc-CCceeCCEEEEEEEEEecC
Confidence            99999999999876442221     234642    4678999999999999984 4999999999999998743

>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A

Probab=99.97  E-value=4.2e-32  Score=192.60  Aligned_cols=136  Identities=21%  Similarity=0.294  Sum_probs=111.1

Q ss_pred             cCCCCEEEEEEcccccccC-------ceEecCcEEEc--ceEEEEEEEeCCCCCCCCCeEEEEEEecCCCCC-CCCceEE
Q 041280            6 SASICKYVWKIENFSKLEA-------KFYESEVFVAG--DQKWKIRLYPKGQGQRTGSHLSMFLALADSSTV-TRDFKIC   75 (145)
Q Consensus         6 ~~~~~~~~w~I~nfs~~~~-------~~~~S~~f~~~--g~~W~l~~~p~g~~~~~~~~ls~yL~~~~~~~~-~~~~~~~   75 (145)
                      .+..+.++|+|+|||.+++       +.++||+|.+|  |++|+|++||+|++.+.++|||+||.+.+++.. ..+|+++
T Consensus        36 ~~~~g~~~w~I~nfS~~~~~~~~~~g~~i~S~~F~vg~~Gy~W~i~~yPnG~~~~~~~~lSlyL~l~~g~~D~~l~wp~~  115 (198)
T 4ghu_A           36 ASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFK  115 (198)
T ss_dssp             CCSSSEEEEEECCHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred             cccccEEEEEECCHHHHHhhhccCCCcEEECCCeEECCCCcEEEEEEEeCCCCCCCCCeEEEEEEecCCccCCCCCceEE
Confidence            4678999999999999863       68999999999  999999999999887667899999999876532 3579999


Q ss_pred             EEEEEEEEcCCCCc-cccee-----ccee----ecCccccccccceeeccccccCCCCeeeCCEEEEEEEEEEEeecc
Q 041280           76 VRYTLRIRDQLQSK-HNDKI-----ARTW----IRPSIGARGWLQFVELSYLNKASNGLLVHDVCIVEAEVSVLGISK  143 (145)
Q Consensus        76 ~~f~~~l~n~~~~~-~~~~~-----~~~~----F~~~~~~wG~~~fi~~~~L~~~~~~fl~dd~l~i~~~i~v~~~~~  143 (145)
                      |+|+|.|+||.+.+ ++...     ....    |...+.+|||++||++++|++  +|||+||+|+|+|+|+|+....
T Consensus       116 a~~~l~Lldq~~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~--~gyL~dD~l~I~~~V~v~~~~~  191 (198)
T 4ghu_A          116 QKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSDLPD  191 (198)
T ss_dssp             CCEEEEECCCSTTCCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEEHHHHHH--TTSCBTTBEEEEEEECCTTCC-
T ss_pred             EEEEEEEEcCCCCccceEEEeecCcccceecCCcccCcCCcCchhEeEHHHhhh--cCCeeCCEEEEEEEEEeccCCC
Confidence            99999999998753 22211     1112    333567899999999999997  7999999999999999876543

>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A

Probab=99.97  E-value=2.9e-31  Score=182.58  Aligned_cols=133  Identities=22%  Similarity=0.249  Sum_probs=104.3

Q ss_pred             CCCCEEEEEEccccccc-----Cc--eEecCcEEEc--ceEEEEEEEeCCCCCC-CCCeEEEEEEecCCCCC-CCCceEE
Q 041280            7 ASICKYVWKIENFSKLE-----AK--FYESEVFVAG--DQKWKIRLYPKGQGQR-TGSHLSMFLALADSSTV-TRDFKIC   75 (145)
Q Consensus         7 ~~~~~~~w~I~nfs~~~-----~~--~~~S~~f~~~--g~~W~l~~~p~g~~~~-~~~~ls~yL~~~~~~~~-~~~~~~~   75 (145)
                      +..++|.|+|+|||.++     ++  .++||+|.+|  |++|+|++||+|++.+ .++|||+||.+.+.+.. ..+|+++
T Consensus         2 ~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yP~G~~~~~~~~~lSlyL~l~~~~~d~~l~wp~~   81 (160)
T 1lb6_A            2 QCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQ   81 (160)
T ss_dssp             CCCEEEEEEECCHHHHHHHHHTTCCEEEECCCEESSSSCCEEEEEEEECCTTCTTTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred             ccCcEEEEEECCHHHHHHhhhcCCCeEEECcCeecCCCCeeEEEEEEecCCCCCCCCCEEEEEEEEeecCCCccCCCcee
Confidence            35689999999999986     33  8999999999  9999999999997754 36899999999876532 3569999


Q ss_pred             EEEEEEEEcCCCCcc---ccee-----cceeecC-----ccccccccceeeccccccCCCCeeeCCEEEEEEEEEEEee
Q 041280           76 VRYTLRIRDQLQSKH---NDKI-----ARTWIRP-----SIGARGWLQFVELSYLNKASNGLLVHDVCIVEAEVSVLGI  141 (145)
Q Consensus        76 ~~f~~~l~n~~~~~~---~~~~-----~~~~F~~-----~~~~wG~~~fi~~~~L~~~~~~fl~dd~l~i~~~i~v~~~  141 (145)
                      |+|+|+|+||.+...   ....     ....|..     .+.+|||++||++++|++  +|||+||+|+|+|+|.|+.+
T Consensus        82 a~~~l~lldq~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~G~~~Fi~~~~L~~--~~yl~dD~l~I~~~V~v~~~  158 (160)
T 1lb6_A           82 GTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQ--RTFIKDDTLLVRCEVSTRFD  158 (160)
T ss_dssp             SEEEEEECCCSCTTSCCCEEEEEECCTTSGGGSCCSSSBCSEEEEEEEEEEGGGGGT--SCCCBTTBEEEEEEEEC---
T ss_pred             eeEEEEEEcCCCccccccceEEeecCCcchhccCCcccCCCCCcCEeeEeEHHHhhh--CCCccCCEEEEEEEEEEeec
Confidence            999999999986521   1111     1123432     134799999999999996  79999999999999999765

>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A

Probab=99.97  E-value=2.4e-31  Score=188.01  Aligned_cols=133  Identities=23%  Similarity=0.324  Sum_probs=109.4

Q ss_pred             CCCCEEEEEEccccccc-----Cc--eEecCcEEEc--ceEEEEEEEeCCCCCCCCCeEEEEEEecCCCCC-CCCceEEE
Q 041280            7 ASICKYVWKIENFSKLE-----AK--FYESEVFVAG--DQKWKIRLYPKGQGQRTGSHLSMFLALADSSTV-TRDFKICV   76 (145)
Q Consensus         7 ~~~~~~~w~I~nfs~~~-----~~--~~~S~~f~~~--g~~W~l~~~p~g~~~~~~~~ls~yL~~~~~~~~-~~~~~~~~   76 (145)
                      ...++|.|+|+|||.++     ++  .++||+|.+|  |++|+|++||+|++.+.++|+|+||.+.+.+.. ..+|++.+
T Consensus        37 ~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gykw~i~~yPnG~~~~~~~~lSlyL~l~~~~~d~~l~wp~~a  116 (192)
T 2gkw_A           37 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQ  116 (192)
T ss_dssp             CCSSEEEEEEECHHHHHHHHHHTSCSCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred             ccCcEEEEEECCHHHHHHHhhcCCCceEEcccEEECCCCcEEEEEEEeCCCCCCCCCEEEEEEEEecCCCCccCCCcEEE
Confidence            37899999999999986     33  5899999999  999999999999876667899999999876543 35799999


Q ss_pred             EEEEEEEcCCCCc-cccee-----cceeecC----ccccccccceeeccccccCCCCeeeCCEEEEEEEEEEEee
Q 041280           77 RYTLRIRDQLQSK-HNDKI-----ARTWIRP----SIGARGWLQFVELSYLNKASNGLLVHDVCIVEAEVSVLGI  141 (145)
Q Consensus        77 ~f~~~l~n~~~~~-~~~~~-----~~~~F~~----~~~~wG~~~fi~~~~L~~~~~~fl~dd~l~i~~~i~v~~~  141 (145)
                      +|+|+|+||.+.+ ++...     ..+.|..    .+.+|||++||++++|++  +|||+||+|+|+|+|.|.+.
T Consensus       117 ~~~l~lldq~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~wG~~~Fi~~~~L~~--~gyl~dD~l~I~~~V~v~~~  189 (192)
T 2gkw_A          117 KVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSDL  189 (192)
T ss_dssp             CEEEEECCCSTTCCCEEEEECCCTTCTTSSCCSSSBCCCEEEEEEEEHHHHHH--TTSCBTTEEEEEEEECCTTS
T ss_pred             EEEEEEECCCCCccceEEEEecCCCcccccCCCCCCcCCCChHHEeEHHHhCc--CCCeeCCEEEEEEEEEcCCC
Confidence            9999999999874 33211     1245653    257899999999999998  59999999999999987543

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A

Probab=99.97  E-value=2.4e-30  Score=194.53  Aligned_cols=131  Identities=24%  Similarity=0.412  Sum_probs=108.9

Q ss_pred             cCCCCEEEEEEccccccc---CceEecCcEEEcce---EEEEEEEeCCCCCCCCCeEEEEEEecCCCCCCCCceEEEEEE
Q 041280            6 SASICKYVWKIENFSKLE---AKFYESEVFVAGDQ---KWKIRLYPKGQGQRTGSHLSMFLALADSSTVTRDFKICVRYT   79 (145)
Q Consensus         6 ~~~~~~~~w~I~nfs~~~---~~~~~S~~f~~~g~---~W~l~~~p~g~~~~~~~~ls~yL~~~~~~~~~~~~~~~~~f~   79 (145)
                      +...++++|+|+|||.++   ++.++||+|.+||+   +|+|.+||+|.+++.++|+|+||.|.++    ++|++.|+|+
T Consensus         3 ~~~~~~~~w~I~nfs~~~~~~~~~i~S~~F~~gg~~~~~W~i~~yP~G~~~~~~~~lslyL~~~~~----~~~~v~a~~~   78 (312)
T 3hqi_A            3 KVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC----PKSEVRAKFK   78 (312)
T ss_dssp             EEEEEEEEEEETTGGGCCCCTTCCEECCCBCC--CCCCEEEEEEETTCCC--CTTEEEEEEEEEEC----CC-CEEEEEE
T ss_pred             ceEEEEEEEEEcCcchhhhcCCCeEeeCCcccCCCCCceEEEEEECCCCCccCCCcEEEEEEEcCC----CCCcEEEEEE
Confidence            445689999999999996   78899999999985   9999999999887667899999999865    3699999999


Q ss_pred             EEEEcCCCCcccc--eecceeecCccccccccceeeccccccCCCCeeeCCEEEEEEEEEEEee
Q 041280           80 LRIRDQLQSKHND--KIARTWIRPSIGARGWLQFVELSYLNKASNGLLVHDVCIVEAEVSVLGI  141 (145)
Q Consensus        80 ~~l~n~~~~~~~~--~~~~~~F~~~~~~wG~~~fi~~~~L~~~~~~fl~dd~l~i~~~i~v~~~  141 (145)
                      |+|+|+.+++...  ....+.|+ .+.+|||++||+|++|+++.+|||+||+|+|+|+|+|++.
T Consensus        79 ~~l~~~~~~~~~~~~~~~~~~F~-~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~i~~~v~v~~~  141 (312)
T 3hqi_A           79 FSILNAKGEETKAMESQRAYRFV-QGKDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSVVQD  141 (312)
T ss_dssp             EEEECTTSCEEEEEECSSCEEEC-TTCEEEEEEEEEHHHHTCGGGCCCGGGCEEEEEEEEEEEE
T ss_pred             EEEEeCCCCcccccccCCceeCC-CCCCcCHHHhccHHHhhccccCeecCCEEEEEEEEEEEec
Confidence            9999999876432  23456787 4568999999999999887789999999999999999853

>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A

Probab=99.96  E-value=5.4e-31  Score=190.64  Aligned_cols=134  Identities=22%  Similarity=0.303  Sum_probs=110.7

Q ss_pred             CCCCEEEEEEcccccccC-------ceEecCcEEEc--ceEEEEEEEeCCCCCCCCCeEEEEEEecCCCCC-CCCceEEE
Q 041280            7 ASICKYVWKIENFSKLEA-------KFYESEVFVAG--DQKWKIRLYPKGQGQRTGSHLSMFLALADSSTV-TRDFKICV   76 (145)
Q Consensus         7 ~~~~~~~w~I~nfs~~~~-------~~~~S~~f~~~--g~~W~l~~~p~g~~~~~~~~ls~yL~~~~~~~~-~~~~~~~~   76 (145)
                      +..++|.|+|+|||.+++       ..++||+|.+|  |++|+|++||+|++.+.++|+|+||.+.+++.. ..+|++.+
T Consensus        73 ~~~g~~~wkI~nfS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~~~~~lSlyL~l~~~~~d~~l~Wp~~a  152 (228)
T 1flk_A           73 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQ  152 (228)
T ss_dssp             CSSSEEEEEEECHHHHHHHHHTTSCCCEECCCEESSTTSCEECEEEETTCCGGGTTTEEEEEECCBCCTTTTSSCSSCCC
T ss_pred             CcCcEEEEEECCHHHHHHHhhcCCCeeEECceEEeCCCCcEEEEEEEcCCCCCCCCCEEEEEEEEecCCccccCCCcEEE
Confidence            478999999999999862       27899999999  999999999999877667899999999876543 45799999


Q ss_pred             EEEEEEEcCCCCc-ccce-----ecceeec----CccccccccceeeccccccCCCCeeeCCEEEEEEEEEEEeec
Q 041280           77 RYTLRIRDQLQSK-HNDK-----IARTWIR----PSIGARGWLQFVELSYLNKASNGLLVHDVCIVEAEVSVLGIS  142 (145)
Q Consensus        77 ~f~~~l~n~~~~~-~~~~-----~~~~~F~----~~~~~wG~~~fi~~~~L~~~~~~fl~dd~l~i~~~i~v~~~~  142 (145)
                      +|+|+|+||.+.+ ++..     ...+.|.    ..+.+|||++||++++|++  +|||+||+|+|+|+|.|.+..
T Consensus       153 ~~~l~lldq~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~wG~~~Fi~~~~L~~--~gyL~dD~l~I~~~V~v~~~~  226 (228)
T 1flk_A          153 KVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSDLP  226 (228)
T ss_dssp             CEEEEECCCSSSCCCEEEEECCCTTCTTSSSCSSSBCCCCSEEEEEEHHHHSS--STTCCSSEEEEEEECCCTTSC
T ss_pred             EEEEEEEcCCCCccceeeeecCCCccccccCCccCCCCCcCHHHeeEHHHHcc--CCCccCCEEEEEEEEEccccc
Confidence            9999999999775 3321     1123464    2357899999999999997  799999999999999886543

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}

Probab=99.96  E-value=2.6e-29  Score=200.56  Aligned_cols=135  Identities=16%  Similarity=0.218  Sum_probs=112.6

Q ss_pred             CCCCEEEEEEcccccccCceEecCcEEEcceEEEEEEEeCCCCCC-CCCeEEEEEEecCCCCCCCCceEEEEEEEEEEcC
Q 041280            7 ASICKYVWKIENFSKLEAKFYESEVFVAGDQKWKIRLYPKGQGQR-TGSHLSMFLALADSSTVTRDFKICVRYTLRIRDQ   85 (145)
Q Consensus         7 ~~~~~~~w~I~nfs~~~~~~~~S~~f~~~g~~W~l~~~p~g~~~~-~~~~ls~yL~~~~~~~~~~~~~~~~~f~~~l~n~   85 (145)
                      ...++++|+|+|||.+++ .++|++|.+||++|+|.+||+|+..+ ..+|||+||.+... ..+.+|.+.|+|+|+|+|+
T Consensus        28 ~~~~~~~w~I~nfS~~~~-~~~S~~F~vgg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~-~~~~~w~v~a~f~l~l~n~  105 (522)
T 2f1z_A           28 RSEATFQFTVERFSRLSE-SVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE-SDSTSWSCHAQAVLKIINY  105 (522)
T ss_dssp             CSEEEEEEEESSCTTCCS-CEECCCEEETTEEEEEEECBC--------CBBCEEEEESTT-CCCSSCBEEEEEEEEECCT
T ss_pred             cCCcEEEEEECChhhcCC-ceeCCCEEECCEeeEEEEEeCCCCCCCCCCeEEEEEEecCC-CCCCCceEEEEEEEEEEcC
Confidence            456899999999999976 78999999999999999999997543 56899999999876 4567899999999999999


Q ss_pred             CCCc-ccceecceeecCccccccccceeeccccccCCCCeeeCCEEEEEEEEEEEeecc
Q 041280           86 LQSK-HNDKIARTWIRPSIGARGWLQFVELSYLNKASNGLLVHDVCIVEAEVSVLGISK  143 (145)
Q Consensus        86 ~~~~-~~~~~~~~~F~~~~~~wG~~~fi~~~~L~~~~~~fl~dd~l~i~~~i~v~~~~~  143 (145)
                      .+++ +..+...+.|...+.+|||.+||++++|.++.+|||+||+++|+|+|+|...+|
T Consensus       106 ~~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~g~L~nD~l~i~~~V~v~~p~g  164 (522)
T 2f1z_A          106 RDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHG  164 (522)
T ss_dssp             TCGGGCEEEECCEEECGGGCEEEESSSSBHHHHSCGGGSSCBTTBEEEEEEEEECCCBS
T ss_pred             CCCccceeccceeEecCCCCCcchhheeEhhHhcCcccCcccCCcEEEEEEeecccccc
Confidence            8765 344566788887778999999999999987778999999999999999976554

>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*

Probab=99.68  E-value=1.5e-16  Score=127.85  Aligned_cols=129  Identities=16%  Similarity=0.198  Sum_probs=101.6

Q ss_pred             ecccCCCCEEEEEEccccccc---CceEecCcEE-EcceEEEEEEEeCCCCCCCCCeEEEEEEecCCCC-CCCCceE-EE
Q 041280            3 KLTSASICKYVWKIENFSKLE---AKFYESEVFV-AGDQKWKIRLYPKGQGQRTGSHLSMFLALADSST-VTRDFKI-CV   76 (145)
Q Consensus         3 ~~~~~~~~~~~w~I~nfs~~~---~~~~~S~~f~-~~g~~W~l~~~p~g~~~~~~~~ls~yL~~~~~~~-~~~~~~~-~~   76 (145)
                      ++++..+..+.|+|+||+++.   +..++||+|. ..||+++|.++|++     ..|+|+|+++.+++. .-..||+ .-
T Consensus       399 s~t~G~CP~~vw~i~nfs~~l~~~~~~~~Sp~Fys~~GY~~~v~l~~~~-----~~~~~~~~~l~sG~~D~~L~WP~~~~  473 (592)
T 4gwm_A          399 NLSETRCPHHIWHIRNFTQFIGSPNGTLYSPPFYSSKGYAFQIYLNLAH-----VTNAGIYFHLISGANDDQLQWPCPWQ  473 (592)
T ss_dssp             EEESSCCCSEEEEECSCGGGTTCTTCEEECCCEECTTSCEEEEEEECCS-----SSEEEEEEEEECCTTGGGSCSSCCSE
T ss_pred             EEeeCCCCCCceeecCHHHhhcCCCCceeCCCccCCCCeEEEEEEecCC-----CceEEEEEEEecCCCCCCccCCCCCC
Confidence            467788999999999999986   5689999995 67999999999976     469999999998764 3568999 56


Q ss_pred             EEEEEEEcCCCCcc----ccee--------c---------------ceeec-----CccccccccceeeccccccCCCCe
Q 041280           77 RYTLRIRDQLQSKH----NDKI--------A---------------RTWIR-----PSIGARGWLQFVELSYLNKASNGL  124 (145)
Q Consensus        77 ~f~~~l~n~~~~~~----~~~~--------~---------------~~~F~-----~~~~~wG~~~fi~~~~L~~~~~~f  124 (145)
                      ++++.|++|.++..    ..+.        .               ...|.     .++.+|||+.||+++.|..  ..|
T Consensus       474 q~t~~llDQ~pd~~~rms~~~s~ttdp~~~~~~~~~~w~~P~~~g~~~~~~~~~~~~r~~~~G~~~fish~~l~~--r~f  551 (592)
T 4gwm_A          474 QATMTLLDQNPDIRQRMSNQRSITTDPFMTTDNGNYFWDRPSKVGTVALFSNGTQFRRGGGYGTSAFITHERLKS--RDF  551 (592)
T ss_dssp             EEEEEECCCCSSGGGCCCEEEEEECCTTCBCTTSCBTTSCHHHHCEEEECTTCCEEEEEEEEEEEEEEEHHHHTS--TTS
T ss_pred             EEEEEEeCCCCChHhcCceeEEEEcCCcccCcccccccCCcccccccccccCCcceeecCCcCccccccHHHHhh--cCc
Confidence            89999999986531    1110        0               00121     1346799999999999997  689


Q ss_pred             eeCCEEEEEEEEEE
Q 041280          125 LVHDVCIVEAEVSV  138 (145)
Q Consensus       125 l~dd~l~i~~~i~v  138 (145)
                      |+||+++|.++|+=
T Consensus       552 iK~d~~~i~~~~eD  565 (592)
T 4gwm_A          552 IKGDDVYILLTVED  565 (592)
T ss_dssp             SBTTBEEEEEEEEE
T ss_pred             ccCCeEEEEEEEEe
Confidence            99999999999854

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	145
d1czya1	152	b.8.1.1 (A:350-501) TNF receptor associated factor	5e-22
d2cr2a1	146	b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {H	1e-21
d1l0aa1	155	b.8.1.1 (A:350-504) TNF receptor associated factor	1e-18
d1lb6a_	155	b.8.1.1 (A:) TNF receptor associated factor 6 (TRA	5e-18

>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2 (TRAF2) {Human (Homo sapiens) [TaxId: 9606]} Length = 152

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 2 (TRAF2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.7 bits (206), Expect = 5e-22
 Identities = 34/150 (22%), Positives = 57/150 (38%), Gaps = 20/150 (13%)

Query: 11  KYVWKIENFSKL-------EAKFYESEVFVAGDQ--KWKIRLYPKGQGQRTGSHLSMFLA 61
            ++WKI +F +              S  F       K  +R+Y  G G   G+HLS+F  
Sbjct: 4   VFIWKISDFPRKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFV 63

Query: 62  LADSSTVTRDFKIC-VRYTLRIRDQLQSKHN------DKIARTWIRPS---IGARGWLQF 111
           +               + TL + DQ   +H       D  + ++ RP      A G   F
Sbjct: 64  VMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLF 123

Query: 112 VELSYLNKASNGLLVHDVCIVEAEVSVLGI 141
             +S + +A N  +  D   ++A V + G+
Sbjct: 124 CPVSKM-EAKNSYVRDDAIFIKAIVDLTGL 152

>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human (Homo sapiens) [TaxId: 9606]} Length = 146

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: Speckle-type poz protein SPOP
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.5 bits (203), Expect = 1e-21
 Identities = 33/138 (23%), Positives = 59/138 (42%), Gaps = 11/138 (7%)

Query: 10  CKYVWKIENFSKLEA---KFYESEVFVAGDQ---KWKIRLYPKGQGQRTGSHLSMFLALA 63
             Y+W I NFS       +  +S  F +G     KW +R+ PKG  + +  +LS++L L 
Sbjct: 5   FSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLV 64

Query: 64  DSSTVTRDFKICVRYTLRIRDQLQSKHND-KIARTWIRPSIGARGWLQFVELSYLNKASN 122
                    ++  ++   I +    +    +  R +        G+ +F+   +L   +N
Sbjct: 65  S----CPKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEAN 120

Query: 123 GLLVHDVCIVEAEVSVLG 140
           GLL  D   +  EVSV+ 
Sbjct: 121 GLLPDDKLTLFCEVSVVQ 138

>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3 (TRAF3) {Human (Homo sapiens) [TaxId: 9606]} Length = 155

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 3 (TRAF3)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.9 bits (183), Expect = 1e-18
 Identities = 30/152 (19%), Positives = 51/152 (33%), Gaps = 22/152 (14%)

Query: 11  KYVWKIENFSKL-------EAKFYESEVFVAGDQ--KWKIRLYPKGQGQRTGSHLSMFLA 61
             +WKI ++ +        +     S+ F  G    K   R+Y  G G   G+HLS+F  
Sbjct: 4   VLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFV 63

Query: 62  LADSST-VTRDFKICVRYTLRIRDQLQSKHNDKIARTWIRPS----------IGARGWLQ 110
           +          +    + TL + DQ  S+ +   A      S            A G   
Sbjct: 64  IMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPV 123

Query: 111 FVELSYLNKASNGLLVHDVCIVEAEVSVLGIS 142
           FV  + L   +   +  D   ++  V    + 
Sbjct: 124 FVAQTVLE--NGTYIKDDTIFIKVIVDTSDLP 153

>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]} Length = 155

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 6 (TRAF6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.3 bits (179), Expect = 5e-18
 Identities = 31/151 (20%), Positives = 52/151 (34%), Gaps = 26/151 (17%)

Query: 11  KYVWKIENFSKL-------EAKFYESEVFVAGDQ--KWKIRLYPKGQGQ-RTGSHLSMFL 60
            Y+WKI NF          +     S  F  G    K  +RL+ +     R  +++S+F+
Sbjct: 6   IYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFV 65

Query: 61  ALADSST-VTRDFKICVRYTLRIRDQLQSKHNDKIART---------WIRPSIGAR---- 106
                       +       L I DQ ++                  + RP+I       
Sbjct: 66  HTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGF 125

Query: 107 GWLQFVELSYLNKASNGLLVHDVCIVEAEVS 137
           G++ F+ L  L +     +  D  +V  EVS
Sbjct: 126 GYVTFMHLEALRQ--RTFIKDDTLLVRCEVS 154

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	145
d2cr2a1	146	Speckle-type poz protein SPOP {Human (Homo sapiens	100.0
d1czya1	152	TNF receptor associated factor 2 (TRAF2) {Human (H	99.97
d1l0aa1	155	TNF receptor associated factor 3 (TRAF3) {Human (H	99.97
d1lb6a_	155	TNF receptor associated factor 6 (TRAF6) {Human (H	99.97

>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: Speckle-type poz protein SPOP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-33  Score=189.38  Aligned_cols=130  Identities=26%  Similarity=0.432  Sum_probs=111.2

Q ss_pred             CCEEEEEEccccccc---CceEecCcEEEcc---eEEEEEEEeCCCCCCCCCeEEEEEEecCCCCCCCCceEEEEEEEEE
Q 041280            9 ICKYVWKIENFSKLE---AKFYESEVFVAGD---QKWKIRLYPKGQGQRTGSHLSMFLALADSSTVTRDFKICVRYTLRI   82 (145)
Q Consensus         9 ~~~~~w~I~nfs~~~---~~~~~S~~f~~~g---~~W~l~~~p~g~~~~~~~~ls~yL~~~~~~~~~~~~~~~~~f~~~l   82 (145)
                      ..+++|+|+|||.++   +++++||.|.++|   ++|+|.+||+|..++.++|||+||.+.+.    ..|++.++|+|.|
T Consensus         4 ~~~~~W~I~nfs~~~~~~~~~~~Sp~F~~~~~~~~~W~l~lyp~G~~~~~~~~lSv~L~~~~~----~~~~v~~~~~~~l   79 (146)
T d2cr2a1           4 KFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC----PKSEVRAKFKFSI   79 (146)
T ss_dssp             EEEEEEEEETGGGCCCCSSCCEECCCBCSSSCCSCCBEEEECTTCSSSSSSSBCCEEEECCCC----SSSEEEEECEEEE
T ss_pred             EEEEEEEECCchHHhhcCCCEEECCCEEeCCcCCeEEEEEEEECCCCCCCCCEEEEEEEeccC----CCceEEEEEEEEE
Confidence            568999999999986   4689999999877   48999999999988778899999999875    3699999999999


Q ss_pred             EcCCCCccc-ceecceeecCccccccccceeeccccccCCCCeeeCCEEEEEEEEEEEeec
Q 041280           83 RDQLQSKHN-DKIARTWIRPSIGARGWLQFVELSYLNKASNGLLVHDVCIVEAEVSVLGIS  142 (145)
Q Consensus        83 ~n~~~~~~~-~~~~~~~F~~~~~~wG~~~fi~~~~L~~~~~~fl~dd~l~i~~~i~v~~~~  142 (145)
                      +|+.+++.. .....+.+...+.+|||++||++++|+++++|||+||+|+|+|+|+|++++
T Consensus        80 ~n~~~~~~~~~~~~~~~~~~~~~~~G~~~fi~~~~l~~~~~g~l~~d~l~I~~~I~v~~e~  140 (146)
T d2cr2a1          80 LNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDS  140 (146)
T ss_dssp             ECTTSCEEEEEECSCCEEEETTCEEEESCCSBHHHHSCTTTTSCTTSEEEEEEEEEEECCS
T ss_pred             EcCCCCcccceEecceEeCCCCCeeeccEEEEHHHhcCcccCceeCCEEEEEEEEEEEeCC
Confidence            999877643 222333444577899999999999999998999999999999999998764

>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2 (TRAF2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 2 (TRAF2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=9.5e-33  Score=186.75  Aligned_cols=130  Identities=22%  Similarity=0.334  Sum_probs=106.6

Q ss_pred             CCEEEEEEccccccc-------CceEecCcEEEc--ceEEEEEEEeCCCCCCCCCeEEEEEEecCCCC-CCCCceEEEEE
Q 041280            9 ICKYVWKIENFSKLE-------AKFYESEVFVAG--DQKWKIRLYPKGQGQRTGSHLSMFLALADSST-VTRDFKICVRY   78 (145)
Q Consensus         9 ~~~~~w~I~nfs~~~-------~~~~~S~~f~~~--g~~W~l~~~p~g~~~~~~~~ls~yL~~~~~~~-~~~~~~~~~~f   78 (145)
                      .++++|+|+|||.++       +..++||+|.++  |++|+|++||+|.+++.++|+|+||++..++. .+..|+++++|
T Consensus         2 ~g~f~W~I~nFs~l~~~~~~~~~~~~~Sp~F~~g~~Gy~w~l~~yP~G~~~~~~~~lSlyL~l~~~~~d~~~~~~~~~~~   81 (152)
T d1czya1           2 DGVFIWKISDFPRKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQKV   81 (152)
T ss_dssp             SSEEEEEECSHHHHHHHHHTTSCCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCCCE
T ss_pred             CCEEEEEECCcHHHHHhhhcCCCceEECcCEEcCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEccCCcCcccccceeeEE
Confidence            689999999999985       346899999988  99999999999988777799999999987653 24579999999


Q ss_pred             EEEEEcCCCCccccee-----c----ceeecCccccccccceeeccccccCCCCeeeCCEEEEEEEEEEE
Q 041280           79 TLRIRDQLQSKHNDKI-----A----RTWIRPSIGARGWLQFVELSYLNKASNGLLVHDVCIVEAEVSVL  139 (145)
Q Consensus        79 ~~~l~n~~~~~~~~~~-----~----~~~F~~~~~~wG~~~fi~~~~L~~~~~~fl~dd~l~i~~~i~v~  139 (145)
                      +|+|+||.+++.....     .    .+.+...+.+|||.+||++++|++ .+|||+||+|+|+|+|.|.
T Consensus        82 ~~~l~d~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~G~~~fi~~~~L~~-~~gfl~dD~l~I~~~V~v~  150 (152)
T d1czya1          82 TLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEA-KNSYVRDDAIFIKAIVDLT  150 (152)
T ss_dssp             EEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETCCCCC-STTTSCSSCEEEEEEECCT
T ss_pred             EEEEEcCCCCccceeeeccccccccccCCCcccccccchhhEEEHHHhcc-cCCcEeCCEEEEEEEEEec
Confidence            9999999887532111     1    112333568899999999999964 5799999999999999764

>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3 (TRAF3) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 3 (TRAF3)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.2e-32  Score=184.53  Aligned_cols=132  Identities=21%  Similarity=0.291  Sum_probs=108.5

Q ss_pred             CCEEEEEEccccccc-------CceEecCcEEEc--ceEEEEEEEeCCCCCCCCCeEEEEEEecCCCC-CCCCceEEEEE
Q 041280            9 ICKYVWKIENFSKLE-------AKFYESEVFVAG--DQKWKIRLYPKGQGQRTGSHLSMFLALADSST-VTRDFKICVRY   78 (145)
Q Consensus         9 ~~~~~w~I~nfs~~~-------~~~~~S~~f~~~--g~~W~l~~~p~g~~~~~~~~ls~yL~~~~~~~-~~~~~~~~~~f   78 (145)
                      +++++|+|+|||.+.       +..++||+|.++  |++|+|++||+|.+++.++|+|+||++.+++. ....|+++++|
T Consensus         2 ~g~f~W~I~nfs~~~~~~~~~~~~~~~S~~F~~~~~Gy~w~l~~yp~G~~~~~~~~lSlyL~l~~~~~d~~~~~~~~~~~   81 (155)
T d1l0aa1           2 NGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKV   81 (155)
T ss_dssp             SSEEEEEEECHHHHHHHHHTTSCSEEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTTTTSCSSCCCCE
T ss_pred             CCEEEEEECCcHHHHHhhhcCCCcEEECcCEEeCCCCcEEEEEEEeCCCCCCCCCEEEEEEEEccCCcCcccCCcEEEEE
Confidence            689999999999885       347899999988  99999999999998777789999999987653 35679999999


Q ss_pred             EEEEEcCCCCcc-ccee---------cceeecCccccccccceeeccccccCCCCeeeCCEEEEEEEEEEEeec
Q 041280           79 TLRIRDQLQSKH-NDKI---------ARTWIRPSIGARGWLQFVELSYLNKASNGLLVHDVCIVEAEVSVLGIS  142 (145)
Q Consensus        79 ~~~l~n~~~~~~-~~~~---------~~~~F~~~~~~wG~~~fi~~~~L~~~~~~fl~dd~l~i~~~i~v~~~~  142 (145)
                      +|+|+||.++.. ....         ..+.+...+.+|||++||++++|++  +|||+||+|+|+|+|.+.+..
T Consensus        82 ~~~l~~q~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~G~~~fi~~~~L~~--~gfl~dD~l~I~~~V~~~~~~  153 (155)
T d1l0aa1          82 TLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSDLP  153 (155)
T ss_dssp             EEEECCCSSSCCCEEEEECCCTTSTTSSCCSSSBCCCEEEEEEEEHHHHHT--TTTCBTTEEEEEEEECCSSSC
T ss_pred             EEEEecCCCCccceeEEEeeccccccccccccccccCcChhheeEHHHhhh--CCCEECCEEEEEEEEEeCCCC
Confidence            999999987752 2111         1222334567899999999999986  799999999999999875543

>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 6 (TRAF6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2e-30  Score=175.47  Aligned_cols=129  Identities=22%  Similarity=0.279  Sum_probs=105.3

Q ss_pred             CCCCEEEEEEccccccc-------CceEecCcEEEc--ceEEEEEEEeCCCCCC-CCCeEEEEEEecCCCC-CCCCceEE
Q 041280            7 ASICKYVWKIENFSKLE-------AKFYESEVFVAG--DQKWKIRLYPKGQGQR-TGSHLSMFLALADSST-VTRDFKIC   75 (145)
Q Consensus         7 ~~~~~~~w~I~nfs~~~-------~~~~~S~~f~~~--g~~W~l~~~p~g~~~~-~~~~ls~yL~~~~~~~-~~~~~~~~   75 (145)
                      ...+++.|+|+|||.++       +..++||+|.++  |++|||.+||+|...+ ..+|+|+||++..++. .+.+|+++
T Consensus         2 ~~~G~f~W~I~nfs~~~~~~~~~~~~~i~Sp~F~~g~~Gy~wrl~~yp~g~~~~~~~~~lsvyL~l~~~~~d~~~~~~~~   81 (155)
T d1lb6a_           2 QCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQ   81 (155)
T ss_dssp             CCCEEEEEEECCHHHHHHHHHTTCCEEEECCCEESSSSCCEEEEEEEECCTTCTTTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred             ccccEEEEEECChHHHHHhhhcCCCcEEECcCEEeCCCCcEEEEEEEeCCCCCCCCCCEEEEEEEEecCcccccCCCcEE
Confidence            45789999999999985       357999999998  9999999999997765 3589999999987653 35689999


Q ss_pred             EEEEEEEEcCCCCccc-cee------------cceeecCccccccccceeeccccccCCCCeeeCCEEEEEEEEE
Q 041280           76 VRYTLRIRDQLQSKHN-DKI------------ARTWIRPSIGARGWLQFVELSYLNKASNGLLVHDVCIVEAEVS  137 (145)
Q Consensus        76 ~~f~~~l~n~~~~~~~-~~~------------~~~~F~~~~~~wG~~~fi~~~~L~~~~~~fl~dd~l~i~~~i~  137 (145)
                      +.++|.|++|.+.... ...            ....+...+.+|||.+||++++|++  +|||+||+|+|+|+|+
T Consensus        82 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~fi~~~~L~~--~gyl~dD~l~I~~~V~  154 (155)
T d1lb6a_          82 GTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQ--RTFIKDDTLLVRCEVS  154 (155)
T ss_dssp             SEEEEEECCCSCTTSCCCEEEEEECCTTSGGGSCCSSSBCSEEEEEEEEEEGGGGGT--SCCCBTTBEEEEEEEE
T ss_pred             EEEEEEEECCCCCccceeeEEeeecCCccccccCCcccCCcCCcChHHeeEHHHhcc--CCCEECCEEEEEEEEE
Confidence            9999999999876421 110            1123344567899999999999986  7999999999999986