Citrus Sinensis ID: 041283

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170--
Protein Sequence
LTKVGTFWVSKKAKEELSHITQDLSICVSLSNTLEEKAKLIFSMLKGKPLKALPDLLRECNIPPGLFPRNITCYDFDESRSKLIVYLPSPCAVSFKDSSVVRYATRVKGTLSRGKLSGVEGMKIKVLVWVKVTGVAVESYKSDKLWFTAGVKVSRPKDAYEMLRDAIRVEQY
Secondary Structure (PSIPRED)
cccccccHHEHHHHHHHHHHHHHHHHHHHccccHHHHHEEEEEEccccccccHHHHHHHccccccccccccEEEEEEccccEEEEEEcccEEEEEcccEEEEEcEEEEEEEccccEEcccccEEEEEEEEEEEEEEEEEccccEEEEEEEEcccccccHHccccccEEEccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHcccHHHHHHccccccHHcccEEEEccccccccccHHHHHHHccccccccccccEEEEEcccccEEEEEEcccEEEEEcccEEEEEEcEEEEEEEcccEcccccEEEEEEEEEEEEEEEEEcccccEEEEEEEEcccccHHHccccccccccccc
Coil and Loop (DISEMBL)
LTKVGTFWVSKKAKEELSHITQDLSICVSLSNTLEEKAKLIFSMLkgkplkalpdllrecnippglfprnitcydfdesrsklivylpspcavsfkdssVVRYATRVkgtlsrgklsgvegmKIKVLVWVKVTGVAVEsyksdklwftagvkvsrpkDAYEMLRDAIRVEQY
Flexible Loop (DISEMBL)
ltkvgtfwvskkakeelshitqdlSICVSLSNTLEEKAKLIFSMLKGKPLKALPDLLRECNIPPGLFPRNITCYDFDESRSKLIVYLPSpcavsfkdssvvryatrvkgtlsrgklsgvegmkikVLVWVKVTGVAvesyksdklwftagvkvsrpkdAYEMLRDAIRVEQY
Low Complexity Region (SEG)
LTKVGTFWVSKKAKEELSHITQDLSICVSLSNTLEEKAKLIFSMLKGKPLKALPDLLRECNIPPGLFPRNITCYDFDESRSKLIVYLPSPCAVSFKDSSVVRYATRVKGTLSRGKLSGVEGMKIKVLVWVKVTGVAVESYKSDKLWFTAGVKVSRPKDAYEMLRDAIRVEQY
Disordered region (IsUnstruct)
****GTFWVSKKAKEELSHITQDLSICVSLSNTLEEKAKLIFSMLKGKPLKALPDLLRECNIPPGLFPRNITCYDFDESRSKLIVYLPSPCAVSFKDSSVVRYATRVKGTLSRGKLSGVEGMKIKVLVWVKVTGVAVESYKSDKLWFTAGVKVSRP**AY************
Disordered Region (DISOPRED)
****GTFWVSKKAKEELSHITQDLSICVSLSNTLEEKA**************LPDLLRECNIPPGLFPRNITCYDFDESRSKLIVYLPSPCAVSFKDSSVVRYATRVKGTLSRGKLSGVEGMKIKVLVWVKVTGVAVESYKSDKLWFTAGVKVSRPKDAYEMLRDAIRVEQY
Disordered Region (DISEMBL)
LTKVGTFWVSKKAKEELSHITQDLSICVSLSNTLEEKAKLIFSMLKGKPLKALPDLLRECNIPPGLFPRNITCYDFDESRSKLIVYLPSPCAVSFKDSSVVRYATRVKGTLSRGKLSGVEGMKIKVLVWVKVTGVAVESYKSDKLWFTAGVKVSRPKDAYEMLRDAIRVEQY
Disordered Region (DISPRO)
*TKVGTFWVSKKAKEELSHITQDLSICVSLSNTLEEKAKLIFSMLKGKPLKALPDLLRECNIPPGLFPRNITCYDFDESRSKLIVYLPSPCAVSFKDSSVVRYATRVKGTLSRGKLSGVEGMKIKVLVWVKVTGVAVESYKSDKLWFTAGVKVSRPKDAYEMLRDAIRVE*Y
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
LTKVGTFWVSKKAKEELSHITQDLSICVSLSNTLEEKAKLIFSMLKGKPLKALPDLLRECNIPPGLFPRNITCYDFDESRSKLIVYLPSPCAVSFKDSSVVRYATRVKGTLSRGKLSGVEGMKIKVLVWVKVTGVAVESYKSDKLWFTAGVKVSRPKDAYEMLRDAIRVEQY
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	172	2.2.26 [Sep-21-2011]
Q9M015	170	Uncharacterized protein A	no	no	0.965	0.976	0.436	1e-38

>sp|Q9M015|Y5161_ARATH Uncharacterized protein At5g01610 OS=Arabidopsis thaliana GN=At5g01610 PE=1 SV=1

 Score =  159 bits (401), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 75/172 (43%), Positives = 120/172 (69%), Gaps = 6/172 (3%)

Query: 1   LTKVGTFWVSKKAKEELSHITQDLSICVSLSNTLEEKAKLIFSMLKGKPLKALPDLLREC 60
             KVG++W+ +KA ++   +  DL+   S+S ++E   K + + +KGK  K LP+LL+E 
Sbjct: 5   FNKVGSYWLGQKANKQFDSVGNDLN---SVSTSIEGGTKWLVNKIKGKMQKPLPELLKEY 61

Query: 61  NIPPGLFPRNITCYDFDESRSKLIVYLPSPCAVSFKDSSVVRYATRVKGTLSRGKLSGVE 120
           ++P G+FP + T Y+FDE   KL V +PS C V +KDSSV+++ T V G L +GKL+ VE
Sbjct: 62  DLPIGIFPGDATNYEFDEETKKLTVLIPSICEVGYKDSSVLKFTTTVTGHLEKGKLTDVE 121

Query: 121 GMKIKVLVWVKVTGVAVESYKSDKLWFTAGVKVSRPKDAYEMLRDAIRVEQY 172
           G+K KV++WVKVT ++ +   + K++FTAG+K SR +DAYE+ R+ +RV+++
Sbjct: 122 GIKTKVMIWVKVTSISTD---ASKVYFTAGMKKSRSRDAYEVQRNGLRVDKF 170

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	172
225424977	178	PREDICTED: uncharacterized protein At5g0	0.970	0.938	0.752	1e-70
297738193	194	unnamed protein product [Vitis vinifera]	0.988	0.876	0.710	2e-69
359473631	189	PREDICTED: uncharacterized protein At5g0	0.988	0.899	0.710	2e-69
449434748	178	PREDICTED: uncharacterized protein At5g0	0.970	0.938	0.747	3e-68
359491682	173	PREDICTED: uncharacterized protein At5g0	0.982	0.976	0.773	5e-68
255547307	173	conserved hypothetical protein [Ricinus	0.982	0.976	0.715	4e-67
224101419	178	predicted protein [Populus trichocarpa]	0.970	0.938	0.717	4e-66
356494877	180	PREDICTED: uncharacterized protein At5g0	0.965	0.922	0.710	5e-65
224108932	178	predicted protein [Populus trichocarpa]	0.970	0.938	0.705	8e-65
147832529	223	hypothetical protein VITISV_004942 [Viti	0.988	0.762	0.603	8e-65

>gi|225424977|ref|XP_002266182.1| PREDICTED: uncharacterized protein At5g01610 isoform 1 [Vitis vinifera]

 Score =  270 bits (690), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 128/170 (75%), Positives = 149/170 (87%), Gaps = 3/170 (1%)

Query: 3   KVGTFWVSKKAKEELSHITQDLSICVSLSNTLEEKAKLIFSMLKGKPLKALPDLLRECNI 62
           K G+FW+S KAKEE S+ITQD++    LSNT+EEKAK +F+ LKGKPLK LPDLLRE N+
Sbjct: 12  KAGSFWISSKAKEEFSNITQDITY---LSNTVEEKAKWVFNKLKGKPLKTLPDLLREYNL 68

Query: 63  PPGLFPRNITCYDFDESRSKLIVYLPSPCAVSFKDSSVVRYATRVKGTLSRGKLSGVEGM 122
           PPGLFP+NITCY+FDES++KL VYLPS C VSF DSSV+RYATRVKG L RGKL+G+EGM
Sbjct: 69  PPGLFPQNITCYEFDESKAKLTVYLPSACEVSFSDSSVIRYATRVKGILLRGKLTGIEGM 128

Query: 123 KIKVLVWVKVTGVAVESYKSDKLWFTAGVKVSRPKDAYEMLRDAIRVEQY 172
           K KVLVWVKVT VAVESYKSDK+WFTAGVK SRPKDAYEM RDA+RV+++
Sbjct: 129 KTKVLVWVKVTNVAVESYKSDKVWFTAGVKKSRPKDAYEMPRDAVRVQEF 178

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738193|emb|CBI27394.3| unnamed protein product [Vitis vinifera]

 Score =  266 bits (681), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 130/183 (71%), Positives = 151/183 (82%), Gaps = 13/183 (7%)

Query: 3   KVGTFWVSKKAKEELSHITQDLS-ICVS------------LSNTLEEKAKLIFSMLKGKP 49
           K G+FW+S KAKEE S+ITQD++ IC              LSNT+EEKAK +F+ LKGKP
Sbjct: 12  KAGSFWISSKAKEEFSNITQDITDICFKNGLLCKQKHEKYLSNTVEEKAKWVFNKLKGKP 71

Query: 50  LKALPDLLRECNIPPGLFPRNITCYDFDESRSKLIVYLPSPCAVSFKDSSVVRYATRVKG 109
           LK LPDLLRE N+PPGLFP+NITCY+FDES++KL VYLPS C VSF DSSV+RYATRVKG
Sbjct: 72  LKTLPDLLREYNLPPGLFPQNITCYEFDESKAKLTVYLPSACEVSFSDSSVIRYATRVKG 131

Query: 110 TLSRGKLSGVEGMKIKVLVWVKVTGVAVESYKSDKLWFTAGVKVSRPKDAYEMLRDAIRV 169
            L RGKL+G+EGMK KVLVWVKVT VAVESYKSDK+WFTAGVK SRPKDAYEM RDA+RV
Sbjct: 132 ILLRGKLTGIEGMKTKVLVWVKVTNVAVESYKSDKVWFTAGVKKSRPKDAYEMPRDAVRV 191

Query: 170 EQY 172
           +++
Sbjct: 192 QEF 194

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473631|ref|XP_003631336.1| PREDICTED: uncharacterized protein At5g01610 isoform 2 [Vitis vinifera]

 Score =  266 bits (679), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 130/183 (71%), Positives = 151/183 (82%), Gaps = 13/183 (7%)

Query: 3   KVGTFWVSKKAKEELSHITQDLS-ICVS------------LSNTLEEKAKLIFSMLKGKP 49
           K G+FW+S KAKEE S+ITQD++ IC              LSNT+EEKAK +F+ LKGKP
Sbjct: 7   KAGSFWISSKAKEEFSNITQDITDICFKNGLLCKQKHEKYLSNTVEEKAKWVFNKLKGKP 66

Query: 50  LKALPDLLRECNIPPGLFPRNITCYDFDESRSKLIVYLPSPCAVSFKDSSVVRYATRVKG 109
           LK LPDLLRE N+PPGLFP+NITCY+FDES++KL VYLPS C VSF DSSV+RYATRVKG
Sbjct: 67  LKTLPDLLREYNLPPGLFPQNITCYEFDESKAKLTVYLPSACEVSFSDSSVIRYATRVKG 126

Query: 110 TLSRGKLSGVEGMKIKVLVWVKVTGVAVESYKSDKLWFTAGVKVSRPKDAYEMLRDAIRV 169
            L RGKL+G+EGMK KVLVWVKVT VAVESYKSDK+WFTAGVK SRPKDAYEM RDA+RV
Sbjct: 127 ILLRGKLTGIEGMKTKVLVWVKVTNVAVESYKSDKVWFTAGVKKSRPKDAYEMPRDAVRV 186

Query: 170 EQY 172
           +++
Sbjct: 187 QEF 189

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434748|ref|XP_004135158.1| PREDICTED: uncharacterized protein At5g01610-like isoform 1 [Cucumis sativus]

 Score =  262 bits (670), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 127/170 (74%), Positives = 148/170 (87%), Gaps = 3/170 (1%)

Query: 3   KVGTFWVSKKAKEELSHITQDLSICVSLSNTLEEKAKLIFSMLKGKPLKALPDLLRECNI 62
           KVG+ W+SKKAKEEL++IT DL+   + SNT+EEKAK IF+ LKGKPLK+LPDLLRE N+
Sbjct: 12  KVGSLWISKKAKEELANITDDLN---TFSNTVEEKAKWIFNKLKGKPLKSLPDLLREYNL 68

Query: 63  PPGLFPRNITCYDFDESRSKLIVYLPSPCAVSFKDSSVVRYATRVKGTLSRGKLSGVEGM 122
           PPGLFP+N+TCY+FDES+SKLIVYLPS C +SFKDSSVVRYATRVKGTL RGKL+ +EGM
Sbjct: 69  PPGLFPQNMTCYEFDESKSKLIVYLPSACEISFKDSSVVRYATRVKGTLQRGKLTNIEGM 128

Query: 123 KIKVLVWVKVTGVAVESYKSDKLWFTAGVKVSRPKDAYEMLRDAIRVEQY 172
           K KVLVWVKVT V+VE YKSDK+WFTAGVK SR KDAYE   DAIRV ++
Sbjct: 129 KTKVLVWVKVTSVSVEGYKSDKVWFTAGVKKSRSKDAYEKPHDAIRVGEF 178

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491682|ref|XP_003634304.1| PREDICTED: uncharacterized protein At5g01610-like [Vitis vinifera] gi|147778229|emb|CAN69724.1| hypothetical protein VITISV_018889 [Vitis vinifera] gi|297733933|emb|CBI15180.3| unnamed protein product [Vitis vinifera]

 Score =  261 bits (668), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 133/172 (77%), Positives = 158/172 (91%), Gaps = 3/172 (1%)

Query: 1   LTKVGTFWVSKKAKEELSHITQDLSICVSLSNTLEEKAKLIFSMLKGKPLKALPDLLREC 60
           LTKVG+FW+SKKAKEE+S+IT+DLS   + SNT+EEKA+ +F+ LKGKP KALPDLLRE 
Sbjct: 5   LTKVGSFWISKKAKEEISNITEDLS---TFSNTVEEKARWVFNKLKGKPAKALPDLLREH 61

Query: 61  NIPPGLFPRNITCYDFDESRSKLIVYLPSPCAVSFKDSSVVRYATRVKGTLSRGKLSGVE 120
           N+PPGLFPRNITCY+FDESRSKLIVYLPS C VSFKDSS++RYATRVKGTL+RGKL+G+E
Sbjct: 62  NLPPGLFPRNITCYEFDESRSKLIVYLPSACEVSFKDSSIIRYATRVKGTLARGKLTGIE 121

Query: 121 GMKIKVLVWVKVTGVAVESYKSDKLWFTAGVKVSRPKDAYEMLRDAIRVEQY 172
           GMK KVLVWVKVT V+VE+YKSDK+WFTAGVK SRPKDAYEM RDA+++E++
Sbjct: 122 GMKTKVLVWVKVTVVSVETYKSDKVWFTAGVKKSRPKDAYEMTRDAVKIEEF 173

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547307|ref|XP_002514711.1| conserved hypothetical protein [Ricinus communis] gi|223546315|gb|EEF47817.1| conserved hypothetical protein [Ricinus communis]

 Score =  259 bits (661), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 123/172 (71%), Positives = 150/172 (87%), Gaps = 3/172 (1%)

Query: 1   LTKVGTFWVSKKAKEELSHITQDLSICVSLSNTLEEKAKLIFSMLKGKPLKALPDLLREC 60
           LTKVG+FW+SKKAKEE SHI+QD+S   + S+T+EEKAK +F+ LKGKP K+L D+LRE 
Sbjct: 5   LTKVGSFWISKKAKEEFSHISQDIS---TFSDTVEEKAKWVFNKLKGKPQKSLSDVLREY 61

Query: 61  NIPPGLFPRNITCYDFDESRSKLIVYLPSPCAVSFKDSSVVRYATRVKGTLSRGKLSGVE 120
           N+PPG+FP+NI CY+ +ESR KL+V+L SPC V FKDSSVVRYATRVKGTLSRGKL+G+E
Sbjct: 62  NLPPGIFPQNIKCYELEESRGKLVVHLQSPCEVCFKDSSVVRYATRVKGTLSRGKLNGIE 121

Query: 121 GMKIKVLVWVKVTGVAVESYKSDKLWFTAGVKVSRPKDAYEMLRDAIRVEQY 172
           GMK KVLVWVKVT ++VES KSDK+WFTAGVK SRPKDAYE  R+AI+VE++
Sbjct: 122 GMKTKVLVWVKVTSLSVESLKSDKVWFTAGVKKSRPKDAYEFPREAIKVEEF 173

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101419|ref|XP_002312271.1| predicted protein [Populus trichocarpa] gi|222852091|gb|EEE89638.1| predicted protein [Populus trichocarpa]

 Score =  255 bits (652), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 122/170 (71%), Positives = 150/170 (88%), Gaps = 3/170 (1%)

Query: 3   KVGTFWVSKKAKEELSHITQDLSICVSLSNTLEEKAKLIFSMLKGKPLKALPDLLRECNI 62
           KVG+ W+SKKAKEE S+IT+D++   ++SNT+EEKA+ +F+ LKGKPLK+LPDLLRE N+
Sbjct: 12  KVGSLWISKKAKEEFSNITEDIN---TISNTVEEKARWVFNKLKGKPLKSLPDLLREYNL 68

Query: 63  PPGLFPRNITCYDFDESRSKLIVYLPSPCAVSFKDSSVVRYATRVKGTLSRGKLSGVEGM 122
           PPGLFP+NITCY+FDES++KLIVYL S C VSFKDSSV+RYA RVK  L+RGKL+G+EGM
Sbjct: 69  PPGLFPQNITCYEFDESKAKLIVYLSSACEVSFKDSSVIRYAPRVKTILARGKLTGIEGM 128

Query: 123 KIKVLVWVKVTGVAVESYKSDKLWFTAGVKVSRPKDAYEMLRDAIRVEQY 172
           K KVLVWVKVT VAVESYKSDK+WFTAGVK SRPK AY++ + AIRVE++
Sbjct: 129 KTKVLVWVKVTSVAVESYKSDKVWFTAGVKKSRPKIAYDVPQAAIRVEEF 178

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356494877|ref|XP_003516309.1| PREDICTED: uncharacterized protein At5g01610-like [Glycine max]

 Score =  252 bits (643), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 120/169 (71%), Positives = 144/169 (85%), Gaps = 3/169 (1%)

Query: 4   VGTFWVSKKAKEELSHITQDLSICVSLSNTLEEKAKLIFSMLKGKPLKALPDLLRECNIP 63
           +G+ W++KKAKEE S+I++D S   + SNT+EEKAK IF+ LKGKP K+LPDLLRE N+P
Sbjct: 15  LGSSWITKKAKEEFSNISEDFS---TFSNTVEEKAKWIFNKLKGKPQKSLPDLLREYNLP 71

Query: 64  PGLFPRNITCYDFDESRSKLIVYLPSPCAVSFKDSSVVRYATRVKGTLSRGKLSGVEGMK 123
           PGLFP+NI CY+FDE++ KLIVYLPS C VSFKDSSV+RYATRVKG L+RGKLS ++GMK
Sbjct: 72  PGLFPQNIICYEFDETKGKLIVYLPSTCEVSFKDSSVLRYATRVKGVLTRGKLSAIDGMK 131

Query: 124 IKVLVWVKVTGVAVESYKSDKLWFTAGVKVSRPKDAYEMLRDAIRVEQY 172
            KVLVWVKVT VAVE YKSDKLWFTAGVK SR KDAY+  RDA+RV ++
Sbjct: 132 TKVLVWVKVTNVAVEGYKSDKLWFTAGVKKSRTKDAYDTPRDAVRVSEF 180

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108932|ref|XP_002315020.1| predicted protein [Populus trichocarpa] gi|222864060|gb|EEF01191.1| predicted protein [Populus trichocarpa]

 Score =  251 bits (641), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 120/170 (70%), Positives = 146/170 (85%), Gaps = 3/170 (1%)

Query: 3   KVGTFWVSKKAKEELSHITQDLSICVSLSNTLEEKAKLIFSMLKGKPLKALPDLLRECNI 62
           KVG+ W+SKKAKEE S+IT+DL+   + S T+EEKAK +F+ LKGKPLK+LPDLLRE N+
Sbjct: 12  KVGSLWISKKAKEEFSNITEDLN---TFSTTVEEKAKWVFNKLKGKPLKSLPDLLREYNL 68

Query: 63  PPGLFPRNITCYDFDESRSKLIVYLPSPCAVSFKDSSVVRYATRVKGTLSRGKLSGVEGM 122
           PPGLFPRNITCY+FDE+++KLIVYLPS C +SF DSSV+RYATRVK  L RGKL+ +EGM
Sbjct: 69  PPGLFPRNITCYEFDETKAKLIVYLPSVCEISFNDSSVIRYATRVKAILVRGKLTVIEGM 128

Query: 123 KIKVLVWVKVTGVAVESYKSDKLWFTAGVKVSRPKDAYEMLRDAIRVEQY 172
           K KVLVWVKVT VAVE +KSDK+WFTAGVK SRPK AY++ + AIRVE++
Sbjct: 129 KTKVLVWVKVTSVAVEGFKSDKVWFTAGVKKSRPKIAYDVPQTAIRVEEF 178

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147832529|emb|CAN72603.1| hypothetical protein VITISV_004942 [Vitis vinifera]

 Score =  251 bits (641), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 128/212 (60%), Positives = 150/212 (70%), Gaps = 42/212 (19%)

Query: 3   KVGTFWVSKKAKEELSHITQDLS-ICVS-------------------------------- 29
           K G+FW+S KAKEE S+ITQD++ IC                                  
Sbjct: 12  KAGSFWISSKAKEEFSNITQDITDICFKNGLLCKQKHEKYAYDHGNLESTYGSLWQRLGR 71

Query: 30  ---------LSNTLEEKAKLIFSMLKGKPLKALPDLLRECNIPPGLFPRNITCYDFDESR 80
                    +SNT+EEKAK +F+ LKGKPLK LPDLLRE N+P GLFP+NITCY+FDES+
Sbjct: 72  KTVNVLKWYISNTVEEKAKWVFNKLKGKPLKTLPDLLREYNLPXGLFPQNITCYEFDESK 131

Query: 81  SKLIVYLPSPCAVSFKDSSVVRYATRVKGTLSRGKLSGVEGMKIKVLVWVKVTGVAVESY 140
           +KL VYLPS C VSF DSSV+RYATRVKG L RGKL+G+EGMK KVLVWVKVT VAVESY
Sbjct: 132 AKLTVYLPSACEVSFSDSSVIRYATRVKGILLRGKLTGIEGMKTKVLVWVKVTNVAVESY 191

Query: 141 KSDKLWFTAGVKVSRPKDAYEMLRDAIRVEQY 172
           KSDK+WFTAGVK SRPKDAYEM RDA+RV+++
Sbjct: 192 KSDKVWFTAGVKKSRPKDAYEMPRDAVRVQEF 223

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	172
TAIR|locus:2063824	179	AT2G03350 "AT2G03350" [Arabido	0.953	0.916	0.694	1.5e-58
TAIR|locus:2097668	170	AT3G08890 "AT3G08890" [Arabido	0.965	0.976	0.465	6.8e-40
TAIR|locus:2166178	170	AT5G37070 "AT5G37070" [Arabido	0.965	0.976	0.447	3.4e-38
TAIR|locus:2149770	170	AT5G01610 "AT5G01610" [Arabido	0.953	0.964	0.441	6.3e-37
TAIR|locus:2171297	195	AT5G16380 "AT5G16380" [Arabido	0.761	0.671	0.288	6.4e-12
TAIR|locus:505006197	156	AT1G61667 "AT1G61667" [Arabido	0.569	0.628	0.336	2.5e-10
TAIR|locus:2172094	161	AT5G54530 "AT5G54530" [Arabido	0.546	0.583	0.357	4.1e-10
TAIR|locus:505006096	166	AT1G02816 "AT1G02816" [Arabido	0.540	0.560	0.288	8.4e-10
TAIR|locus:2133264	167	AT4G02370 "AT4G02370" [Arabido	0.540	0.556	0.288	1.4e-09
TAIR|locus:2079601	169	AT3G07470 [Arabidopsis thalian	0.656	0.668	0.247	1.2e-08

TAIR|locus:2063824 AT2G03350 "AT2G03350" [Arabidopsis thaliana (taxid:3702)]

 Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
 Identities = 116/167 (69%), Positives = 139/167 (83%)

Query:     3 KVGTFWVSKKAKEELSHITQDLSICVSLSNTLEEKAKLIFSMLKGKPLKALPDLLRECNI 62
             KVG+ W+SKKAKEELS+IT DL+   + S+T+EEKAK IF+ LKGKPLK+LPDLL+E N+
Sbjct:    12 KVGSSWISKKAKEELSNITNDLT---TFSSTVEEKAKWIFNKLKGKPLKSLPDLLKEYNL 68

Query:    63 PPGLFPRNITCYDFDESRSKLIVYLPSPCAVSFKDSSVVRYATRVKGTLSRGKLSGVEGM 122
             PPGLFP+NI CY+FDE+++KL V+  SPC V+FKD S +RYATRVKG L RGKL GVEGM
Sbjct:    69 PPGLFPQNIICYEFDETKNKLTVFFSSPCEVTFKDGSAIRYATRVKGILLRGKLMGVEGM 128

Query:   123 KIKVLVWVKVTGVAVESYKSDKLWFTAGVKVSRPKDAYEMLRDAIRV 169
             K KVLVWVKVT ++VES KSDKLWFTAGVK SR KD Y+   DAI+V
Sbjct:   129 KTKVLVWVKVTTISVESSKSDKLWFTAGVKKSRSKDVYDTPHDAIKV 175

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2097668 AT3G08890 "AT3G08890" [Arabidopsis thaliana (taxid:3702)]

 Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
 Identities = 80/172 (46%), Positives = 123/172 (71%)

Query:     1 LTKVGTFWVSKKAKEELSHITQDLSICVSLSNTLEEKAKLIFSMLKGKPLKALPDLLREC 60
             L KVG++W+ KKA ++L  +  D++   SLS+++E   K + + +KGK  K LP+LL+E 
Sbjct:     5 LNKVGSYWLGKKANKQLDSVGDDIN---SLSSSIEGGTKWLVNKIKGKMQKPLPELLKEF 61

Query:    61 NIPPGLFPRNITCYDFDESRSKLIVYLPSPCAVSFKDSSVVRYATRVKGTLSRGKLSGVE 120
              +P G+FPR+ T Y+F+E   KL V++PS C V +KD+SV+R+ T V G L +GKL+ VE
Sbjct:    62 GLPVGIFPRDATNYEFNEQTRKLTVFIPSICEVGYKDTSVLRFTTTVTGFLEKGKLADVE 121

Query:   121 GMKIKVLVWVKVTGVAVESYKSDKLWFTAGVKVSRPKDAYEMLRDAIRVEQY 172
             GMK KV++WVKVT ++ +S    K+ FTAG+K SR +DAYE+LRD + ++++
Sbjct:   122 GMKTKVMIWVKVTSISADS---SKVHFTAGMKKSRSRDAYEVLRDGVEIDKF 170

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2166178 AT5G37070 "AT5G37070" [Arabidopsis thaliana (taxid:3702)]

 Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
 Identities = 77/172 (44%), Positives = 122/172 (70%)

Query:     1 LTKVGTFWVSKKAKEELSHITQDLSICVSLSNTLEEKAKLIFSMLKGKPLKALPDLLREC 60
             L KVG++W+ +KA +E + +  D +   SLS+++E   K + + LKGK  K LP+LL+E 
Sbjct:     5 LNKVGSYWLGQKANKEFNSVGDDFN---SLSSSIEGGTKWLVNKLKGKMQKPLPELLKEF 61

Query:    61 NIPPGLFPRNITCYDFDESRSKLIVYLPSPCAVSFKDSSVVRYATRVKGTLSRGKLSGVE 120
              +P G+FP++ T Y+F+E   KL V++P  C V ++DSSV+R++T V G L +GKL+ VE
Sbjct:    62 GLPVGIFPQDATNYEFNEETGKLTVFIPETCEVGYRDSSVLRFSTTVTGYLEKGKLAEVE 121

Query:   121 GMKIKVLVWVKVTGVAVESYKSDKLWFTAGVKVSRPKDAYEMLRDAIRVEQY 172
             GMK KV++WVKVT ++ +S    K++FTAG+K SR +DAYE++R  + V+++
Sbjct:   122 GMKTKVMIWVKVTCISADS---SKVYFTAGIKKSRSRDAYEVIRPGVGVDKF 170

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2149770 AT5G01610 "AT5G01610" [Arabidopsis thaliana (taxid:3702)]

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 75/170 (44%), Positives = 120/170 (70%)

Query:     3 KVGTFWVSKKAKEELSHITQDLSICVSLSNTLEEKAKLIFSMLKGKPLKALPDLLRECNI 62
             KVG++W+ +KA ++   +  DL+   S+S ++E   K + + +KGK  K LP+LL+E ++
Sbjct:     7 KVGSYWLGQKANKQFDSVGNDLN---SVSTSIEGGTKWLVNKIKGKMQKPLPELLKEYDL 63

Query:    63 PPGLFPRNITCYDFDESRSKLIVYLPSPCAVSFKDSSVVRYATRVKGTLSRGKLSGVEGM 122
             P G+FP + T Y+FDE   KL V +PS C V +KDSSV+++ T V G L +GKL+ VEG+
Sbjct:    64 PIGIFPGDATNYEFDEETKKLTVLIPSICEVGYKDSSVLKFTTTVTGHLEKGKLTDVEGI 123

Query:   123 KIKVLVWVKVTGVAVESYKSDKLWFTAGVKVSRPKDAYEMLRDAIRVEQY 172
             K KV++WVKVT ++ ++    K++FTAG+K SR +DAYE+ R+ +RV+++
Sbjct:   124 KTKVMIWVKVTSISTDA---SKVYFTAGMKKSRSRDAYEVQRNGLRVDKF 170

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2171297 AT5G16380 "AT5G16380" [Arabidopsis thaliana (taxid:3702)]

 Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
 Identities = 39/135 (28%), Positives = 62/135 (45%)

Query:    38 AKLIFSMLKGKPLKALPDLLRECNIPPGLFPRNITCYDFDESRSKLIVYLPSPCAVSFKD 97
             + ++F  L   P  +  D LRE N+P G+ P+ +T +  D    +  V LP PC   F++
Sbjct:    16 SSILFPQLSSLPDPSFYDYLRESNLPAGIVPKGVTNFSIDIKTGRFTVALPVPCDAKFEN 75

Query:    98 SSVVRYATRVKGTLSRGKLSGVEGMKIKVL-VWVKVTGVAVESYKSDKLWFTAGVKVSRP 156
                  Y   + G LS G++  + G+  K L +W  V G+ V+   S  + F  GV   + 
Sbjct:    76 QFHFDY--NISGVLSDGRIGNLSGVTQKELFLWFAVKGIHVDPQSSGLIHFDVGVADKQL 133

Query:   157 K-DAYEMLRDAIRVE 170
                 +E  RD    E
Sbjct:   134 SLSLFESPRDCTAAE 148

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:505006197 AT1G61667 "AT1G61667" [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 34/101 (33%), Positives = 55/101 (54%)

Query:    52 ALPDLLRECNIPPGLFPRNITCYDFDESRSKLIVYLPSPCAVSFKDSSVVRYATRVKGTL 111
             ++ +LL    +P GLFP N+  Y  D+   +L V L +PC   F++   V +   +K  L
Sbjct:    21 SIRNLLEARGLPGGLFPDNVESYSLDDKTGELEVQLQNPCFARFENR--VYFDRVIKANL 78

Query:   112 SRGKLSGVEGM-KIKVLVWVKVTGVAVESYKSDKLWFTAGV 151
             S G L G+EG+ + ++ +W+ V G+AV    S  + F  GV
Sbjct:    79 SYGGLVGLEGLTQEELFLWLPVKGIAVNDPSSGLVLFDIGV 119

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2172094 AT5G54530 "AT5G54530" [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 35/98 (35%), Positives = 53/98 (54%)

Query:    55 DLLRECNIPPGLFPRNITCYDFDESRSKLIVYLPSPCAVSFKDSSVVRYATRVKGTLSRG 114
             D+LR   +P GL P+ +  Y       +L V+L +PC   F+ +  V +   V+G LS G
Sbjct:    31 DVLRSEGLPAGLLPQEVDSYILHND-GRLEVFLAAPCYAKFETN--VHFEAVVRGNLSYG 87

Query:   115 KLSGVEGMKIKVL-VWVKVTGVAVESYKSDKLWFTAGV 151
              L GVEG+  K L +W++V  + VE+  S  + F  GV
Sbjct:    88 SLVGVEGLSQKELFLWLQVKDIVVENPNSGVIVFDIGV 125

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:505006096 AT1G02816 "AT1G02816" [Arabidopsis thaliana (taxid:3702)]

 Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
 Identities = 28/97 (28%), Positives = 52/97 (53%)

Query:    56 LLRECNIPPGLFPRNITCYDFDESRSKLIVYLPSPCAVSFKDSSVVRYATRVKGTLSRGK 115
             LL+  N P G+ P+ +  YD D+S  +   Y    C+ + + S  + Y + + G +S  K
Sbjct:    35 LLQSYNFPVGILPKGVVSYDLDKSTGQFHAYFNKSCSFALQGSYQLDYKSTISGYISENK 94

Query:   116 LSGVEGMKIKVL-VWVKVTGVAVESYKSDKLWFTAGV 151
             ++ + G+K+KVL +W+ +  V       D+L F+ G+
Sbjct:    95 ITKLTGVKVKVLFLWLNIVEVI---RNGDELEFSVGI 128

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2133264 AT4G02370 "AT4G02370" [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 28/97 (28%), Positives = 49/97 (50%)

Query:    56 LLRECNIPPGLFPRNITCYDFDESRSKLIVYLPSPCAVSFKDSSVVRYATRVKGTLSRGK 115
             LL+  N P G+ P+ +  YD D +  K   Y    C+ +   S  + Y + + G +S  K
Sbjct:    35 LLQSYNFPVGILPKGVVAYDLDTTTGKFHAYFNDSCSFNLVGSYQLNYKSTISGYISENK 94

Query:   116 LSGVEGMKIKVL-VWVKVTGVAVESYKSDKLWFTAGV 151
             L  + G+K+KVL +W+ +  V       D++ F+ G+
Sbjct:    95 LKKLTGVKVKVLFLWLNIVEVI---RNGDEMEFSVGI 128

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:2079601 AT3G07470 [Arabidopsis thaliana (taxid:3702)]

 Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 29/117 (24%), Positives = 55/117 (47%)

Query:    55 DLLRECNIPPGLFPRNITCYDFDESRSKLIVYLPSPCAVSFKDSSVVRYATRVKGTLSRG 114
             ++L    +P G+FP+ +  + FD    +  VYL   C   ++    + Y   + GT+   
Sbjct:    33 EILLANGLPSGIFPKGVREFTFDVETGRFSVYLNQACEAKYETE--IHYDANITGTIGSA 90

Query:   115 KLSGVEGMKIKVL-VWVKVTGVAVESYKSDKLWFTAGV-KVSRPKDAYEMLRDAIRV 169
             ++S + G+  + L +W  V G+ V+   S  ++F  GV +       +E  RD + V
Sbjct:    91 QISDLSGISAQELFLWFPVKGIRVDVPSSGLIYFDVGVVRKQYSLSLFETPRDCVPV 147

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00021131001 SubName- Full=Chromosome chr1 scaffold_22, whole genome shotgun sequence; (178 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	172
pfam04398	108	pfam04398, DUF538, Protein of unknown function, DU	8e-35

>gnl|CDD|218064 pfam04398, DUF538, Protein of unknown function, DUF538

 Score =  117 bits (296), Expect = 8e-35
 Identities = 47/110 (42%), Positives = 67/110 (60%), Gaps = 5/110 (4%)

Query: 53  LPDLLRECNIPPGLFPRNITCYDFDESRSKLIVYLPSPCAVSFKDSSVVRYATRVKGTLS 112
             +LL E  +P GL P+ +T Y  DE+  K  VYL   C  +F+  S VRY   V G +S
Sbjct: 2   AYELLEEYGLPVGLLPKGVTEYTLDETTGKFWVYLNGTCEFTFEGYS-VRYDPTVTGYIS 60

Query: 113 RGKLSGVEGMKIKVL-VWVKVTGVAVESYKSDKLWFTAGVKV-SRPKDAY 160
           +G+LSG+EG+K+KVL +WV +  ++V+    DKL F+ GV   S P DA+
Sbjct: 61  KGRLSGLEGVKVKVLFLWVPIVEISVDD--GDKLTFSVGVLSKSFPADAF 108

This family consists of several plant proteins of unknown function. Length = 108

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	172
PF04398	110	DUF538: Protein of unknown function, DUF538; Inter	100.0

>PF04398 DUF538: Protein of unknown function, DUF538; InterPro: IPR007493 This family consists of several plant proteins of unknown function

Probab=100.00  E-value=2.8e-43  Score=268.68  Aligned_cols=108  Identities=34%  Similarity=0.664  Sum_probs=81.5

Q ss_pred             CHHHHHHhCCCCCCCCCCCceEEEEeCCCcEEEEEeCCceEEEEcCCeEEEEeeEEEEEEccCeeecccccEEEEE-EEE
Q 041283           52 ALPDLLRECNIPPGLFPRNITCYDFDESRSKLIVYLPSPCAVSFKDSSVVRYATRVKGTLSRGKLSGVEGMKIKVL-VWV  130 (172)
Q Consensus        52 t~~elL~e~gLP~GLLP~~V~~Y~l~~~tG~f~V~L~~~C~~~f~~~~~v~Y~t~VtG~l~~GkI~~L~GVk~K~L-lWv  130 (172)
                      ||||||++||||+||||+++++|+||++||+|||+|+++|+|+|++ |.|+|+++|||+|++|+|++|+|||+|+| +|+
T Consensus         1 tayelL~~~glP~GLLP~~v~~y~l~~~tG~f~v~l~~~C~~~~~~-~~v~Y~~~ItG~i~~g~i~~L~GVk~k~l~~W~   79 (110)
T PF04398_consen    1 TAYELLEEYGLPRGLLPLGVTEYGLNRDTGFFWVKLKSPCEFRFEG-YLVSYDSEITGYIEKGKIKNLTGVKVKELFLWV   79 (110)
T ss_dssp             --HHHHHHHS-TT-TTTSSS-EEEE-TTT-SEEEE-SS-EEEESTT-SEEEE-SEEEEEE-SS-EEEEES-EEE-SSSEE
T ss_pred             CHHHhHHHcCCCCCcCCCCceEEEEecCCcEEEEEecCCEEEEEEE-EEEEEcCeEEEEECCCcCccccCEEEEEEEEEe
Confidence            6899999999999999999999999999999999999999999987 89999999999999999999999999999 999


Q ss_pred             EeeEEEEecCCCCeEEEEeee-cccccccccccC
Q 041283          131 KVTGVAVESYKSDKLWFTAGV-KVSRPKDAYEML  163 (172)
Q Consensus       131 ~VteI~vd~p~~~kI~F~~Gi-~ksfp~~aFe~~  163 (172)
                      +|++|.+   ++++|+|++|. +++||+++|+.+
T Consensus        80 ~v~~i~~---~~~~i~F~~g~~s~sfp~~~F~~s  110 (110)
T PF04398_consen   80 PVTEISV---DGDKIYFKVGGISKSFPVSAFEES  110 (110)
T ss_dssp             S---BEE----SSSEE-TTSSSS----TTTTSS-
T ss_pred             eEEEEEE---cCCEEEEEEeeEeccCCHHHhccC
Confidence            9999999   89999999876 899999999864

; PDB: 1YDU_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	172
1ydu_A	170	Solution Nmr Structure Of At5g01610, An Arabidopsis		6e-39

>pdb|1YDU|A Chain A, Solution Nmr Structure Of At5g01610, An Arabidopsis Thaliana Protein Containing Duf538 Domain Length = 170

Iteration: 1
 Score =  156 bits (394), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 74/172 (43%), Positives = 119/172 (69%), Gaps = 6/172 (3%)
Query: 1   LTKVGTFWVSKKAKEELSHITQDLSICVSLSNTLEEKAKLIFSMLKGKPLKALPDLLREC 60
             KVG++W+ +KA ++   +  DL+   S+S ++E   K + + +KGK  K LP+LL+E 
Sbjct: 5   FNKVGSYWLGQKANKQFDSVGNDLN---SVSTSIEGGTKWLVNKIKGKMQKPLPELLKEY 61
Query: 61  NIPPGLFPRNITCYDFDESRSKLIVYLPSPCAVSFKDSSVVRYATRVKGTLSRGKLSGVE 120
           ++P G+FP + T Y+FDE   KL V +PS C V +KDSSV+++ T V G L +GKL+ VE
Sbjct: 62  DLPIGIFPGDATNYEFDEETKKLTVLIPSICEVGYKDSSVLKFTTTVTGHLEKGKLTDVE 121
Query: 121 GMKIKVLVWVKVTGVAVESYKSDKLWFTAGVKVSRPKDAYEMLRDAIRVEQY 172
           G+K KV++WVKVT ++ +   + K++FTAG+K SR +DAY + R+ +RV+++
Sbjct: 122 GIKTKVMIWVKVTSISTD---ASKVYFTAGMKKSRSRDAYGVQRNGLRVDKF 170

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	172
1ydu_A	170	AT5G01610; DUF538, structural genomics, protein st	5e-66

>1ydu_A AT5G01610; DUF538, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG unknown function; NMR {Arabidopsis thaliana} SCOP: b.162.1.1 Length = 170

 Score =  198 bits (505), Expect = 5e-66
 Identities = 74/172 (43%), Positives = 119/172 (69%), Gaps = 6/172 (3%)

Query: 1   LTKVGTFWVSKKAKEELSHITQDLSICVSLSNTLEEKAKLIFSMLKGKPLKALPDLLREC 60
             KVG++W+ +KA ++   +  DL+   S+S ++E   K + + +KGK  K LP+LL+E 
Sbjct: 5   FNKVGSYWLGQKANKQFDSVGNDLN---SVSTSIEGGTKWLVNKIKGKMQKPLPELLKEY 61

Query: 61  NIPPGLFPRNITCYDFDESRSKLIVYLPSPCAVSFKDSSVVRYATRVKGTLSRGKLSGVE 120
           ++P G+FP + T Y+FDE   KL V +PS C V +KDSSV+++ T V G L +GKL+ VE
Sbjct: 62  DLPIGIFPGDATNYEFDEETKKLTVLIPSICEVGYKDSSVLKFTTTVTGHLEKGKLTDVE 121

Query: 121 GMKIKVLVWVKVTGVAVESYKSDKLWFTAGVKVSRPKDAYEMLRDAIRVEQY 172
           G+K KV++WVKVT ++ +   + K++FTAG+K SR +DAY + R+ +RV+++
Sbjct: 122 GIKTKVMIWVKVTSISTD---ASKVYFTAGMKKSRSRDAYGVQRNGLRVDKF 170

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	172
1ydu_A	170	AT5G01610; DUF538, structural genomics, protein st	100.0

>1ydu_A AT5G01610; DUF538, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG unknown function; NMR {Arabidopsis thaliana} SCOP: b.162.1.1

Probab=100.00  E-value=1.1e-75  Score=475.15  Aligned_cols=166  Identities=45%  Similarity=0.872  Sum_probs=164.3

Q ss_pred             CccccceeeeehhhHHhhhhccccccceeeeeccccceeeeeecccCCCCCCHHHHHHhCCCCCCCCCCCceEEEEeCCC
Q 041283            1 LTKVGTFWVSKKAKEELSHITQDLSICVSLSNTLEEKAKLIFSMLKGKPLKALPDLLRECNIPPGLFPRNITCYDFDESR   80 (172)
Q Consensus         1 ~~k~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkg~~~~t~~elL~e~gLP~GLLP~~V~~Y~l~~~t   80 (172)
                      |||||||||+|||++|+|||+||||   |+|+|||+|||||||||||++++++||||++||||+||||++|++|+||++|
T Consensus         5 ~~k~~~~~~~~~a~~~~~~~~~d~~---~~s~~~~~~~~~~~~~~kg~~~~ta~elL~e~gLP~GLLP~~V~~Y~l~~~t   81 (170)
T 1ydu_A            5 FNKVGSYWLGQKANKQFDSVGNDLN---SVSTSIEGGTKWLVNKIKGKMQKPLPELLKEYDLPIGIFPGDATNYEFDEET   81 (170)
T ss_dssp             CCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCSSCCTTTTTTSSCHHHHHHHSCTTCTTTSSSCEEEECTTT
T ss_pred             hhhhhhhhHhHHHHHhhhhhhhhHh---hhhhhhccchhhhhhhhcccccccHHHHHHHcCCCCCcCCCCCeEEEEECCC
Confidence            7999999999999999999999999   9999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEeCCceEEEEcCCeEEEEeeEEEEEEccCeeecccccEEEEEEEEEeeEEEEecCCCCeEEEEeeeccccccccc
Q 041283           81 SKLIVYLPSPCAVSFKDSSVVRYATRVKGTLSRGKLSGVEGMKIKVLVWVKVTGVAVESYKSDKLWFTAGVKVSRPKDAY  160 (172)
Q Consensus        81 G~f~V~L~~~C~~~f~~~~~v~Y~t~VtG~l~~GkI~~L~GVk~K~LlWv~VteI~vd~p~~~kI~F~~Gi~ksfp~~aF  160 (172)
                      |+|||+|+++|+|+|+++|+|+|+++|||+|++|+|++|+|||+|+|+|++|++|.|   ++++|+|++|++++||++||
T Consensus        82 G~f~V~l~~~C~~~f~~~~~v~Y~~~VtG~l~~GkI~~L~GVk~K~LlWv~V~eI~v---~~~kI~F~vGi~ksfp~saF  158 (170)
T 1ydu_A           82 KKLTVLIPSICEVGYKDSSVLKFTTTVTGHLEKGKLTDVEGIKTKVMIWVKVTSIST---DASKVYFTAGMKKSRSRDAY  158 (170)
T ss_dssp             CSEEEECSSCEEEESTTSSEEEECSEEEEEECSSCEEEEESCEEESSSEESCCCBEE---CSSSEECTTSSSSCCCHHHH
T ss_pred             cEEEEEeCCCEEEEecCccEEEEcCEEEEEEcCCcCccccCEEEEEEEEeeEEEEEE---eCCEEEEEEcCcccccHHHh
Confidence            999999999999999989999999999999999999999999999999999999999   79999999999999999999


Q ss_pred             ccCccceeeccC
Q 041283          161 EMLRDAIRVEQY  172 (172)
Q Consensus       161 e~~~~c~~v~~~  172 (172)
                      +.+|+|+.||||
T Consensus       159 e~~~~c~~~~~f  170 (170)
T 1ydu_A          159 GVQRNGLRVDKF  170 (170)
T ss_dssp             SSCCCCCCTTCC
T ss_pred             cCCcCCcccCCC
Confidence            999999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	172
d1ydua1	169	b.162.1.1 (A:2-170) Hypothetical protein At5g01610	1e-71

>d1ydua1 b.162.1.1 (A:2-170) Hypothetical protein At5g01610 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 169

class: All beta proteins
fold: At5g01610-like
superfamily: At5g01610-like
family: At5g01610-like
domain: Hypothetical protein At5g01610
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  211 bits (539), Expect = 1e-71
 Identities = 74/172 (43%), Positives = 119/172 (69%), Gaps = 6/172 (3%)

Query: 1   LTKVGTFWVSKKAKEELSHITQDLSICVSLSNTLEEKAKLIFSMLKGKPLKALPDLLREC 60
             KVG++W+ +KA ++   +  DL+   S+S ++E   K + + +KGK  K LP+LL+E 
Sbjct: 4   FNKVGSYWLGQKANKQFDSVGNDLN---SVSTSIEGGTKWLVNKIKGKMQKPLPELLKEY 60

Query: 61  NIPPGLFPRNITCYDFDESRSKLIVYLPSPCAVSFKDSSVVRYATRVKGTLSRGKLSGVE 120
           ++P G+FP + T Y+FDE   KL V +PS C V +KDSSV+++ T V G L +GKL+ VE
Sbjct: 61  DLPIGIFPGDATNYEFDEETKKLTVLIPSICEVGYKDSSVLKFTTTVTGHLEKGKLTDVE 120

Query: 121 GMKIKVLVWVKVTGVAVESYKSDKLWFTAGVKVSRPKDAYEMLRDAIRVEQY 172
           G+K KV++WVKVT ++ +   + K++FTAG+K SR +DAY + R+ +RV+++
Sbjct: 121 GIKTKVMIWVKVTSISTD---ASKVYFTAGMKKSRSRDAYGVQRNGLRVDKF 169

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	172
d1ydua1	169	Hypothetical protein At5g01610 {Thale cress (Arabi	100.0

>d1ydua1 b.162.1.1 (A:2-170) Hypothetical protein At5g01610 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: At5g01610-like
superfamily: At5g01610-like
family: At5g01610-like
domain: Hypothetical protein At5g01610
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=3.7e-76  Score=475.39  Aligned_cols=166  Identities=45%  Similarity=0.872  Sum_probs=163.1

Q ss_pred             CccccceeeeehhhHHhhhhccccccceeeeeccccceeeeeecccCCCCCCHHHHHHhCCCCCCCCCCCceEEEEeCCC
Q 041283            1 LTKVGTFWVSKKAKEELSHITQDLSICVSLSNTLEEKAKLIFSMLKGKPLKALPDLLRECNIPPGLFPRNITCYDFDESR   80 (172)
Q Consensus         1 ~~k~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkg~~~~t~~elL~e~gLP~GLLP~~V~~Y~l~~~t   80 (172)
                      |||||||||+|||+||+|||+||||   |||||||||||||||||||+||+++||||++||||+||||++|++|+||++|
T Consensus         4 ~~k~g~~~~~~~a~~~~~~~~~d~~---~~~~~~~~~~~~~~~~l~gk~~k~l~ELL~eygLP~GLLP~~V~~Y~l~~~T   80 (169)
T d1ydua1           4 FNKVGSYWLGQKANKQFDSVGNDLN---SVSTSIEGGTKWLVNKIKGKMQKPLPELLKEYDLPIGIFPGDATNYEFDEET   80 (169)
T ss_dssp             CCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCSSCCTTTTTTSSCHHHHHHHSCTTCTTTSSSCEEEECTTT
T ss_pred             HhhhhhhhhhhhhhhhhhhhhhhHH---HhhhhhccceeEehhhhcCCCCCCHHHHHHhcCCCCccCCCCceEEEEECCC
Confidence            7999999999999999999999999   9999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEeCCceEEEEcCCeEEEEeeEEEEEEccCeeecccccEEEEEEEEEeeEEEEecCCCCeEEEEeeeccccccccc
Q 041283           81 SKLIVYLPSPCAVSFKDSSVVRYATRVKGTLSRGKLSGVEGMKIKVLVWVKVTGVAVESYKSDKLWFTAGVKVSRPKDAY  160 (172)
Q Consensus        81 G~f~V~L~~~C~~~f~~~~~v~Y~t~VtG~l~~GkI~~L~GVk~K~LlWv~VteI~vd~p~~~kI~F~~Gi~ksfp~~aF  160 (172)
                      |+|||+|+++|+|+|+++|+|+|+++|||+|++|+|++|+|||+|.|+|++|++|.+   ++++|+|++|++|+||+++|
T Consensus        81 G~f~V~l~~~C~~~f~~sy~v~Y~~~VtG~ls~Gki~~L~GVkvKlflWv~V~eI~v---d~~kI~F~vGI~KsfP~daF  157 (169)
T d1ydua1          81 KKLTVLIPSICEVGYKDSSVLKFTTTVTGHLEKGKLTDVEGIKTKVMIWVKVTSIST---DASKVYFTAGMKKSRSRDAY  157 (169)
T ss_dssp             CSEEEECSSCEEEESTTSSEEEECSEEEEEECSSCEEEEESCEEESSSEESCCCBEE---CSSSEECTTSSSSCCCHHHH
T ss_pred             cEEEEEeCCCEEEEecCceEEEEcCEEEEEEcCCcCccccceEEEEEEEEEEEEEEE---cCCeEEEEecccccCCHHHc
Confidence            999999999999999989999999999999999999999999999449999999999   68999999999999999999


Q ss_pred             ccCccceeeccC
Q 041283          161 EMLRDAIRVEQY  172 (172)
Q Consensus       161 e~~~~c~~v~~~  172 (172)
                      |.||+|+.||||
T Consensus       158 E~prdg~~vd~f  169 (169)
T d1ydua1         158 GVQRNGLRVDKF  169 (169)
T ss_dssp             SSCCCCCCTTCC
T ss_pred             cCCccceeeccC
Confidence            999999999998