Citrus Sinensis ID: 041295

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------21
Protein Sequence
MNGNVDISSAYNGDEIGIHIENHRGSGRSRDFMDVDLLEEEPCIKCNRRDESLLVCIQSGCPISVHENCLSCGVKSDDVGNIYCPYFWYKCELMRTKELRKKAMETKKQLACFIDPKSFTGDKKENCRTDKGKELNTSSLHQERNYGYGGCEGQMDDVQVENLIVEVEGKLENAGDNAKTADSCDRFKRALENQSELQDKSYSRENTWD
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHccccccccccccccHHccccccccccccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccEEEcccccccccccccccccHcccEEEEcccccEEEEEccccccEEEEHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHcccccccccccccccccccEEEccccccccccccccccccHHEEccccEEEEcccccccEEccccccHHHHHHHHcHHHHccccccccccc
Coil and Loop (DISEMBL)
mngnvdissayngdeigihienhrgsgrsrdfmdvdlleeepcikcnrrdeSLLVCIqsgcpisvhenclscgvksddvgniycpyfwYKCELMRTKELRKKAMETKKQLacfidpksftgdkkencrtdkgkelntsslhqernygyggcegqmddvQVENLIVEVEGklenagdnaktadsCDRFKRALENQSElqdksysrentwd
Flexible Loop (DISEMBL)
MNGNVDISSAYNGDEIGihienhrgsgrsRDFMDVDLLEEEPCIKCNRRDESLLVCIQSGCPISVHENCLSCGVKSDDVGNIYCPYFWYKCELMRTKELRKKAMETKKQlacfidpksftgdkkencrtdkgkelntsslhqeRNYGYGGCEGQMDDVQVENLIVEVEGklenagdnaktadsCDRFKRALenqselqdksysrentwd
Low Complexity Region (SEG)
MNGNVDISSAYNGDEIGIHIENHRGSGRSRDFMDVDLLEEEPCIKCNRRDESLLVCIQSGCPISVHENCLSCGVKSDDVGNIYCPYFWYKCELMRTKELRKKAMETKKQLACFIDPKSFTGDKKENCRTDKGKELNTSSLHQERNYGYGGCEGQMDDVQVENLIVEVEGKLENAGDNAKTADSCDRFKRALENQSELQDKSYSRENTWD
Disordered region (IsUnstruct)
***************IGIHI**********DFMDVDLLEEEPCIKCNRRDESLLVCIQSGCPISVHENCLSCGVKSDDVGNIYCPYFWYKCELMRTKELRKKAMETKKQLACFID******************************YGYGGCEGQMDDVQVENLIVEVE*****************************************
Disordered Region (DISOPRED)
****************************************EPCIKCNRRDESLLVCIQSGCPISVHENCLSCGVKSDDVGNIYCPYFWYKCELMR******************************************************************************************************************
Disordered Region (DISEMBL)
MNGNVDISSAYNGDEIGIHIENHRGSGRSRDFMDVDLLEEEPCIKCNRRDESLLVCIQSGCPISVHENCLSCGVKSDDVGNIYCPYFWYKCELMRTKELRKKAMETKKQLACFIDPKSFTGDKKENCRTDKGKELNTSSLHQERNYGYGGCEGQMDDVQVENLIVEVEGKLENAGDNAKTADSCDRFKRALEN****************
Disordered Region (DISPRO)
********SAYNGDEIGIHIENH****RSRDFMDVDLLEEEPCIKCNRRDESLLVCIQSGCPISVHENCLSCGVKSDDVGNIYCPYFWYKCELMRTKELRKKAMETKKQLACFIDPK*******************TS***QERNYGYGGCEGQMDDVQVENLIVEVEGKLENAGDNAKTADSCDRFKRALENQ***************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNGNVDISSAYNGDEIGIHIENHRGSGRSRDFMDVDLLEEEPCIKCNRRDESLLVCIQSGCPISVHENCLSCGVKSDDVGNIYCPYFWYKCELMRTKELRKKAMETKKQLACFIDPKSFTGDKKENCRTDKGKELNTSSLHQERNYGYGGCEGQMDDVQVENLIVEVEGKLENAGDNAKTADSCDRFKRALENQSELQDKSYSRENTWD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	209
296085075	566	unnamed protein product [Vitis vinifera]	0.641	0.236	0.344	2e-18
224065645	472	predicted protein [Populus trichocarpa]	0.454	0.201	0.465	7e-15
357462399	351	hypothetical protein MTR_3g082160 [Medic	0.397	0.236	0.469	4e-14
449453762	510	PREDICTED: uncharacterized protein LOC10	0.425	0.174	0.452	5e-14
297739691	774	unnamed protein product [Vitis vinifera]	0.511	0.138	0.389	4e-11
147846688	774	hypothetical protein VITISV_016915 [Viti	0.511	0.138	0.389	4e-11
356546362	466	PREDICTED: uncharacterized protein LOC10	0.349	0.156	0.448	4e-11
356555030	580	PREDICTED: uncharacterized protein LOC10	0.444	0.160	0.377	3e-10
255571552	814	conserved hypothetical protein [Ricinus	0.555	0.142	0.333	1e-09
255539006	422	hypothetical protein RCOM_1598630 [Ricin	0.363	0.180	0.402	2e-09

>gi|296085075|emb|CBI28490.3| unnamed protein product [Vitis vinifera]

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/151 (34%), Positives = 87/151 (57%), Gaps = 17/151 (11%)

Query: 5   VDISSAYNGDEI--------GIHIENHRGSGRS-------RDFMDVDLLEEEPCIKCNRR 49
           ++ SS YNG++         G  I   + SG S       + +M+++  ++  CIKC   
Sbjct: 79  LETSSHYNGEQAHQLAPNSSGETIVGTKQSGASGSWDMSTQAWMEIEWTQQSKCIKCGEG 138

Query: 50  DESLLVCIQSGCPISVHENCLSCGVKSDDVGNIYCPYFWYKCELMRTKELRKKAMETKKQ 109
            E +LVC    C ++VHE C++C    DD+G+ YCPY WY+C + ++ E RK+AM +KK 
Sbjct: 139 GE-VLVCSDRVCRLAVHEKCMNCSAAFDDMGDFYCPYCWYRCAIAKSNEARKRAMSSKKA 197

Query: 110 LACFIDPKSFTGD-KKENCRTDKGKELNTSS 139
           L+ F+D K+  G+ +KE  ++  GK+  ++S
Sbjct: 198 LSTFLDTKALCGNQQKEKTKSSNGKKPPSTS 228

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065645|ref|XP_002301900.1| predicted protein [Populus trichocarpa] gi|222843626|gb|EEE81173.1| predicted protein [Populus trichocarpa]

 Score = 86.3 bits (212), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 60/101 (59%), Gaps = 6/101 (5%)

Query: 27  GRSRDFMDVDLLEEEPCIKCNRRDES-LLVCIQSGCPISVHENCLSCGVKSDDVGNIYCP 85
           G   D+M+VD      C+ CN+R +S LLVC   GCP+S+HE C +  +  DD G   CP
Sbjct: 57  GNGGDWMEVDA-----CLSCNKRGKSKLLVCCVIGCPVSIHEKCANFKLAFDDSGRFCCP 111

Query: 86  YFWYKCELMRTKELRKKAMETKKQLACFIDPKSFTGDKKEN 126
           Y  YK E+ R KEL +KAM  KK L  FIDP+   G+ K N
Sbjct: 112 YCSYKREVGRAKELFRKAMLAKKALLGFIDPEMVGGEAKRN 152

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357462399|ref|XP_003601481.1| hypothetical protein MTR_3g082160 [Medicago truncatula] gi|355490529|gb|AES71732.1| hypothetical protein MTR_3g082160 [Medicago truncatula]

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 39/83 (46%), Positives = 54/83 (65%)

Query: 33  MDVDLLEEEPCIKCNRRDESLLVCIQSGCPISVHENCLSCGVKSDDVGNIYCPYFWYKCE 92
           + VD L++  CI CN+    LLVC Q+ CP+SVH  C+    K DD GN +CPY  YK  
Sbjct: 63  VPVDSLDDNICITCNKLGGELLVCSQTDCPVSVHVTCIGSEPKFDDSGNFFCPYCAYKRA 122

Query: 93  LMRTKELRKKAMETKKQLACFID 115
           L +T+ELR+KA+  KK L+ F++
Sbjct: 123 LKKTRELREKAVLAKKALSSFLE 145

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453762|ref|XP_004144625.1| PREDICTED: uncharacterized protein LOC101213119 [Cucumis sativus] gi|449520068|ref|XP_004167056.1| PREDICTED: uncharacterized LOC101213119 [Cucumis sativus]

 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 43/95 (45%), Positives = 59/95 (62%), Gaps = 6/95 (6%)

Query: 31  DFMD-VDLLEEEPCIKCNRRDES--LLVCIQSGCPISVHENCLSCGVKSDDVGNIYCPYF 87
           D +D +D  +++ C +C   DES  LLVC + GCPI++HE C+SC    D+ G  YCPY 
Sbjct: 53  DVLDKIDCFQKDTCTRC---DESGDLLVCTEPGCPIALHELCMSCEPSFDEDGRFYCPYC 109

Query: 88  WYKCELMRTKELRKKAMETKKQLACFIDPKSFTGD 122
            YK  L+R  ELR+K M  K+ L+ FID +   GD
Sbjct: 110 SYKRALIRVNELRRKTMVAKRALSDFIDTRMVGGD 144

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739691|emb|CBI29873.3| unnamed protein product [Vitis vinifera]

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/113 (38%), Positives = 59/113 (52%), Gaps = 6/113 (5%)

Query: 8   SSAYNGDEIGIHIENHRGSGRSRDFMDVDL-----LEEEPCIKCNRRDESLLVCIQSGCP 62
           S+ Y+ +E GI +E          F    L      E+  C+KC + D  LLVC  SGCP
Sbjct: 468 STEYHDEEDGIAMERQNFLSSKCTFNHDSLSIAGWTEQNLCMKCTK-DGQLLVCSSSGCP 526

Query: 63  ISVHENCLSCGVKSDDVGNIYCPYFWYKCELMRTKELRKKAMETKKQLACFID 115
           + VHENCL C    D++GN YCP+  Y   +    E +KK    KK+LA FI+
Sbjct: 527 LVVHENCLGCPPSFDNMGNFYCPFCAYSRAVSEYLESKKKVSLAKKELASFIN 579

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147846688|emb|CAN80644.1| hypothetical protein VITISV_016915 [Vitis vinifera]

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/113 (38%), Positives = 59/113 (52%), Gaps = 6/113 (5%)

Query: 8   SSAYNGDEIGIHIENHRGSGRSRDFMDVDL-----LEEEPCIKCNRRDESLLVCIQSGCP 62
           S+ Y+ +E GI +E          F    L      E+  C+KC + D  LLVC  SGCP
Sbjct: 468 STEYHDEEDGIAMERQNFLSSKCTFNHDSLSIAGWTEQNLCMKCTK-DGQLLVCSSSGCP 526

Query: 63  ISVHENCLSCGVKSDDVGNIYCPYFWYKCELMRTKELRKKAMETKKQLACFID 115
           + VHENCL C    D++GN YCP+  Y   +    E +KK    KK+LA FI+
Sbjct: 527 LVVHENCLGCPPSFDNMGNFYCPFCAYSRAVSEYLESKKKVSLAKKELASFIN 579

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546362|ref|XP_003541595.1| PREDICTED: uncharacterized protein LOC100787956 [Glycine max]

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 35/78 (44%), Positives = 46/78 (58%), Gaps = 5/78 (6%)

Query: 43  CIKCNRRDES-----LLVCIQSGCPISVHENCLSCGVKSDDVGNIYCPYFWYKCELMRTK 97
           CI CN + E      LL+C   GCP++VH  CL+ G K D  GN  CPY WYK  +   +
Sbjct: 37  CIHCNNKGEEAKEDGLLICSGRGCPVAVHATCLATGPKFDGSGNFCCPYCWYKRAVDTCR 96

Query: 98  ELRKKAMETKKQLACFID 115
            LR+KA+E K  L+ F+D
Sbjct: 97  RLREKALEAKGDLSRFLD 114

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555030|ref|XP_003545842.1| PREDICTED: uncharacterized protein LOC100806195 [Glycine max]

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 55/98 (56%), Gaps = 5/98 (5%)

Query: 22  NHRGSGRSRDFMD--VDLLEEEPCIKCNRRDE---SLLVCIQSGCPISVHENCLSCGVKS 76
           +HRGS    +     VD+ ++  CI C+ + E    +L+C   GCP++VH  CL    + 
Sbjct: 53  HHRGSEPEPEPELEPVDIFDKTICIHCDNKGEEAEGVLICGGRGCPVAVHATCLGFEPEF 112

Query: 77  DDVGNIYCPYFWYKCELMRTKELRKKAMETKKQLACFI 114
           DD GN  CPY WYK  +   + LR+KAM+ K +L+ F 
Sbjct: 113 DDSGNFCCPYCWYKRAVDTCRRLREKAMKAKGELSRFF 150

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571552|ref|XP_002526722.1| conserved hypothetical protein [Ricinus communis] gi|223533911|gb|EEF35636.1| conserved hypothetical protein [Ricinus communis]

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 63/120 (52%), Gaps = 4/120 (3%)

Query: 43  CIKCNRRDESLLVCIQSGCPISVHENCLSCGVKSDDVGNIYCPYFWYKCELMRTKELRKK 102
           C++C++ D  LLVC   GCP  VHE CL C  K D+ GN YCP+  Y   + +  E +K 
Sbjct: 469 CVQCSK-DGQLLVCNAVGCPFVVHEKCLGCSPKFDEKGNFYCPFCAYSYAISKYLEAKKT 527

Query: 103 AMETKKQLACFID--PKSFTGDKKENCRTDKGKELNTSSLHQERNYGYGGCEGQMDDVQV 160
           A   +K+L+ FI   P+     K  N   ++ ++ N   +H+  + G  G + + D V+ 
Sbjct: 528 ATLARKELSAFIHKRPERSHLQKLSNLGHNEDED-NICKIHETADLGERGSDKKNDKVRA 586

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539006|ref|XP_002510568.1| hypothetical protein RCOM_1598630 [Ricinus communis] gi|223551269|gb|EEF52755.1| hypothetical protein RCOM_1598630 [Ricinus communis]

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 47/77 (61%), Gaps = 1/77 (1%)

Query: 43  CIKCNRRDESLLVCIQSGCPISVHENCLSCGVKSDDVGNIYCPYFWYKCELMRTKELRKK 102
           C+KCN+  + LL+C  +GC I +H  C+    K D+ GN +CPY WYK +  R +E +K 
Sbjct: 24  CLKCNKGGK-LLICCGAGCAICLHVECIPRKPKYDEEGNFHCPYCWYKLQQARAQEWKKM 82

Query: 103 AMETKKQLACFIDPKSF 119
           A+  KK L+ F+D +  
Sbjct: 83  ALLAKKALSDFMDSRQV 99

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	209
TAIR|locus:2035372	345	AT1G01150 [Arabidopsis thalian	0.660	0.4	0.268	1.9e-11
TAIR|locus:2144568	420	TRFL10 "TRF-like 10" [Arabidop	0.789	0.392	0.267	5.5e-09
TAIR|locus:2006792	429	AT1G14770 [Arabidopsis thalian	0.349	0.170	0.386	5.5e-08
TAIR|locus:2200201	314	AT1G68030 [Arabidopsis thalian	0.387	0.257	0.268	0.00082

TAIR|locus:2035372 AT1G01150 [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 1.9e-11, P = 1.9e-11
 Identities = 39/145 (26%), Positives = 70/145 (48%)

Query:     3 GNVDISSAYNGDEI-GIHIENHRGSGRSRDFMDVDLLEEEPCIKCNRRDESLLVCIQSGC 61
             G+ D++SA N      + ++     G S  F   + L E  CI C+  D+ ++ C  + C
Sbjct:    46 GDEDVNSAPNIFTYDNVPLKKRHYLGTSDTFRSFEPLNEHACIVCDIADDGVVPCSGNEC 105

Query:    62 PISVHENCLSCGVKSDDVGNIYCPYFWYKCELMRTKELRKKAMETKKQLACFIDPKSFTG 121
             P++VH  C+   +  +D    YCPY W+K +  R+  LR + +   K L  +   +  +G
Sbjct:   106 PLAVHRKCVE--LDCEDPATFYCPYCWFKEQATRSTALRTRGVAAAKTLVQYGCSELRSG 163

Query:   122 D---KKENCRTDKGKELNTS-SLHQ 142
             D    +EN + + G + +    LH+
Sbjct:   164 DIVMTRENSQLENGSDNSLPMQLHE 188

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2144568 TRFL10 "TRF-like 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 5.5e-09, P = 5.5e-09
 Identities = 49/183 (26%), Positives = 82/183 (44%)

Query:    37 LLEEEPCIKCNRRDESLLVCIQSGCPISVHENCL---------SCGVKSDDVGNIYCPYF 87
             LL+ + CI C   DE +  C    C +S H  CL         S    S+DV N +CPY 
Sbjct:    67 LLDLDACIVCEVSDERVSRCCGVDCLLSFHGECLYADLGSTSSSSSSSSEDVSNPFCPYC 126

Query:    88 WYKCELMRTKELRKKAMETKKQLACFIDPKSFTGDKKENCRTDK--GKELNTSSLHQERN 145
             W K   +++K LR+K +E +K +  ++D +  + D+      D+   +E +T  +     
Sbjct:   127 WLKIVALKSKTLREKTVEAEKAVCKYLDKEMKSRDEDITLSGDEIGNQEQSTDIVSDHEL 186

Query:   146 YGY-GGCEGQMDDVQVENLIVEVEGKLENAGDNAKTADSCDRFKRALENQSELQDKSYSR 204
              G   GC  + D  Q +   V     ++  G + K A   ++F+ A E+    +D+    
Sbjct:   187 QGEKDGCSSKPDADQGK---VGTGKVIDEVGASEKVAT--EKFQDA-EDDETAKDQGTRI 240

Query:   205 ENT 207
              NT
Sbjct:   241 LNT 243

GO:0003677 "DNA binding" evidence=IEA

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0006302 "double-strand break repair" evidence=RCA

GO:0010332 "response to gamma radiation" evidence=RCA

TAIR|locus:2006792 AT1G14770 [Arabidopsis thaliana (taxid:3702)]

 Score = 143 (55.4 bits), Expect = 5.5e-08, P = 5.5e-08
 Identities = 29/75 (38%), Positives = 40/75 (53%)

Query:    40 EEPCIKCNRRDESLLVCIQSGCPISVHENCLSCGVKSDDVGNIYCPYFWYKCELMRTKEL 99
             E  C KC + + +LL+C +S C   VH+ CL+C V  D+ GN  CP  WY    M   E 
Sbjct:   345 ENVCWKCEK-EGTLLICSRSECAAKVHKECLNCPVNVDEYGNFLCPLCWYDRLAMEYHES 403

Query:   100 RKKAMETKKQLA-CF 113
             +K     K++L  CF
Sbjct:   404 QKLISCAKRRLVKCF 418

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2200201 AT1G68030 [Arabidopsis thaliana (taxid:3702)]

 Score = 108 (43.1 bits), Expect = 0.00082, P = 0.00082
 Identities = 22/82 (26%), Positives = 34/82 (41%)

Query:    43 CIKCNRRDESLLVCIQSGCPISVHENCLSCGVKSDDVGNIYCPYFWYKCELMRTKELRKK 102
             C+ C +    LL C   GC + VH+ CL       D G+ YC      C      + + +
Sbjct:   229 CVNC-KESGKLLFCSSDGCEVMVHQKCLDSPPSYHDAGDFYCSLCALTCPSAEYVQFQDE 287

Query:   103 AMETKKQLACFIDPKSFTGDKK 124
               + K++L  F+   S    KK
Sbjct:   288 VAKAKRKLVSFLRLMSEVNKKK 309


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.133   0.407    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      209       209   0.00079  112 3  11 23  0.41    33
                                                     31  0.48    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  602 (64 KB)
  Total size of DFA:  196 KB (2111 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.67u 0.10s 19.77t   Elapsed:  00:00:01
  Total cpu time:  19.67u 0.10s 19.77t   Elapsed:  00:00:01
  Start:  Fri May 10 06:41:34 2013   End:  Fri May 10 06:41:35 2013

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_II000043 hypothetical protein (472 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	209
smart00249	47	PHD PHD zinc finger. The plant homeodomain (PHD) f	98.4
KOG4299	613	consensus PHD Zn-finger protein [General function	98.28
PF00628	51	PHD: PHD-finger; InterPro: IPR019787 Zinc finger (	98.26
KOG0383	696	consensus Predicted helicase [General function pre	97.61
KOG1973	274	consensus Chromatin remodeling protein, contains P	97.4
COG5141	669	PHD zinc finger-containing protein [General functi	97.33
KOG1244	336	consensus Predicted transcription factor Requiem/N	97.28
KOG0825	1134	consensus PHD Zn-finger protein [General function	97.06
KOG0955	1051	consensus PHD finger protein BR140/LIN-49 [General	96.94
cd04718	148	BAH_plant_2 BAH, or Bromo Adjacent Homology domain	96.87
PF13831	36	PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.	96.5
COG5034	271	TNG2 Chromatin remodeling protein, contains PhD zi	96.37
KOG0956	900	consensus PHD finger protein AF10 [General functio	95.74
KOG1245	1404	consensus Chromatin remodeling complex WSTF-ISWI,	95.6
KOG1512	381	consensus PHD Zn-finger protein [General function	95.58
KOG0954	893	consensus PHD finger protein [General function pre	95.04
KOG4443	694	consensus Putative transcription factor HALR/MLL3,	94.55
KOG0957	707	consensus PHD finger protein [General function pre	94.44
PF13771	90	zf-HC5HC2H: PHD-like zinc-binding domain	94.43
KOG1473	1414	consensus Nucleosome remodeling factor, subunit NU	94.36
KOG0956	900	consensus PHD finger protein AF10 [General functio	92.5
PF15446	175	zf-PHD-like: PHD/FYVE-zinc-finger like domain	92.13
KOG4323	464	consensus Polycomb-like PHD Zn-finger protein [Gen	91.39
KOG4299	613	consensus PHD Zn-finger protein [General function	90.61
KOG1473	1414	consensus Nucleosome remodeling factor, subunit NU	90.58
PF13832	110	zf-HC5HC2H_2: PHD-zinc-finger like domain	90.57
KOG0957	707	consensus PHD finger protein [General function pre	83.61
KOG1081	463	consensus Transcription factor NSD1 and related SE	81.56

>smart00249 PHD PHD zinc finger

Probab=98.40  E-value=2.7e-07  Score=57.51  Aligned_cols=43  Identities=35%  Similarity=0.736  Sum_probs=37.3

Q ss_pred             ceeeccC---CCCeEEeeCCCCCcccccccccCCCCc-cCCCCCcccccc
Q 041295           42 PCIKCNR---RDESLLVCIQSGCPISVHENCLSCGVK-SDDVGNIYCPYF   87 (209)
Q Consensus        42 ~CikC~k---dGq~LL~Cs~~gCPlAvH~kClg~sl~-~dd~GnfYCPyC   87 (209)
                      .|.+|+.   ++. +|.|+  .|+..||..|++.+.. ..+...|+||.|
T Consensus         1 ~C~~C~~~~~~~~-~i~C~--~C~~~~H~~C~~~~~~~~~~~~~~~C~~C   47 (47)
T smart00249        1 YCSVCGKPDDGGE-LLQCD--GCDRWYHQTCLGPPLLEEEPDGKWYCPKC   47 (47)
T ss_pred             CcccCCCcCCCCC-EEECC--CCCchhhhhhCCCcccCCCCCCCEECcCC
Confidence            4788888   455 99999  9999999999998766 778999999987

The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the

>KOG4299 consensus PHD Zn-finger protein [General function prediction only]

Probab=98.28  E-value=1.9e-07  Score=91.24  Aligned_cols=50  Identities=32%  Similarity=0.654  Sum_probs=45.3

Q ss_pred             CCceeeccCCCCeE---EeeCCCCCcccccccccCCC--CccCCCCCccccccchhhH
Q 041295           40 EEPCIKCNRRDESL---LVCIQSGCPISVHENCLSCG--VKSDDVGNIYCPYFWYKCE   92 (209)
Q Consensus        40 eD~CikC~kdGq~L---L~Cs~~gCPlAvH~kClg~s--l~~dd~GnfYCPyC~ykka   92 (209)
                      ++.|-.|+..|. .   ++|+  +||.+||..||.++  +.-.|.|.||||.|-++-.
T Consensus       253 ~~fCsaCn~~~~-F~~~i~CD--~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~k~~  307 (613)
T KOG4299|consen  253 EDFCSACNGSGL-FNDIICCD--GCPRSFHQTCLEPPLEPENIPPGSWFCPECKIKSV  307 (613)
T ss_pred             HHHHHHhCCccc-cccceeec--CCchHHHHhhcCCCCCcccCCCCccccCCCeeeee
Confidence            569999999999 7   9999  89999999999998  7778999999999998743

>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.26  E-value=2.9e-07  Score=60.84  Aligned_cols=45  Identities=24%  Similarity=0.568  Sum_probs=36.1

Q ss_pred             ceeeccC---CCCeEEeeCCCCCcccccccccCCCCc--cCCCCCccccccch
Q 041295           42 PCIKCNR---RDESLLVCIQSGCPISVHENCLSCGVK--SDDVGNIYCPYFWY   89 (209)
Q Consensus        42 ~CikC~k---dGq~LL~Cs~~gCPlAvH~kClg~sl~--~dd~GnfYCPyC~y   89 (209)
                      .|.+|+.   +++ +|.|+  +|...||..|++.+..  -...+.|+||.|.-
T Consensus         1 ~C~vC~~~~~~~~-~i~C~--~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~   50 (51)
T PF00628_consen    1 YCPVCGQSDDDGD-MIQCD--SCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP   50 (51)
T ss_dssp             EBTTTTSSCTTSS-EEEBS--TTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred             eCcCCCCcCCCCC-eEEcC--CCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence            3778888   555 99999  9999999999998655  33345999999963

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....

>KOG0383 consensus Predicted helicase [General function prediction only]

Probab=97.61  E-value=2e-05  Score=78.43  Aligned_cols=54  Identities=33%  Similarity=0.628  Sum_probs=48.6

Q ss_pred             CCCCCCCceeeccCCCCeEEeeCCCCCcccccccccCCCCccCCCCCccccccchhh
Q 041295           35 VDLLEEEPCIKCNRRDESLLVCIQSGCPISVHENCLSCGVKSDDVGNIYCPYFWYKC   91 (209)
Q Consensus        35 ~d~~neD~CikC~kdGq~LL~Cs~~gCPlAvH~kClg~sl~~dd~GnfYCPyC~ykk   91 (209)
                      -++-+++.|-+|...|+ ||.|+  +||.+||..|++.++.-.+.+.|.||-|....
T Consensus        42 ~~~~~~e~c~ic~~~g~-~l~c~--tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~~p~   95 (696)
T KOG0383|consen   42 WDDAEQEACRICADGGE-LLWCD--TCPASFHASCLGPPLTPQPNGEFICPRCFCPK   95 (696)
T ss_pred             cchhhhhhhhhhcCCCc-EEEec--cccHHHHHHccCCCCCcCCccceeeeeeccCC
Confidence            44568999999999999 99999  99999999999999998999999999995543

>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]

Probab=97.40  E-value=7.2e-05  Score=66.06  Aligned_cols=54  Identities=30%  Similarity=0.532  Sum_probs=42.6

Q ss_pred             cCCCCCCCceee-ccCCCCeEEeeCCCCCc-ccccccccCCCCccCCCCCccccccchh
Q 041295           34 DVDLLEEEPCIK-CNRRDESLLVCIQSGCP-ISVHENCLSCGVKSDDVGNIYCPYFWYK   90 (209)
Q Consensus        34 ~~d~~neD~Cik-C~kdGq~LL~Cs~~gCP-lAvH~kClg~sl~~dd~GnfYCPyC~yk   90 (209)
                      ..+.-+.-+|+= |...|+ .+-|+..+|| -=||-.|+|  +...|.|.||||.|.-.
T Consensus       213 ~~d~~e~~yC~Cnqvsyg~-Mi~CDn~~C~~eWFH~~CVG--L~~~PkgkWyC~~C~~~  268 (274)
T KOG1973|consen  213 AVDPDEPTYCICNQVSYGK-MIGCDNPGCPIEWFHFTCVG--LKTKPKGKWYCPRCKAE  268 (274)
T ss_pred             ccCCCCCEEEEeccccccc-ccccCCCCCCcceEEEeccc--cccCCCCcccchhhhhh
Confidence            334445566664 444677 9999988999 779999999  78999999999999744

>COG5141 PHD zinc finger-containing protein [General function prediction only]

Probab=97.33  E-value=7.7e-05  Score=72.97  Aligned_cols=47  Identities=28%  Similarity=0.692  Sum_probs=42.8

Q ss_pred             CCceeeccCCCCe----EEeeCCCCCcccccccccCCCCccCCCCCccccccchh
Q 041295           40 EEPCIKCNRRDES----LLVCIQSGCPISVHENCLSCGVKSDDVGNIYCPYFWYK   90 (209)
Q Consensus        40 eD~CikC~kdGq~----LL~Cs~~gCPlAvH~kClg~sl~~dd~GnfYCPyC~yk   90 (209)
                      +++|.+|.....+    +++|+  +|-++||.+|-|  -.|.|+|.|+|--|.|.
T Consensus       193 d~~C~~c~~t~~eN~naiVfCd--gC~i~VHq~CYG--I~f~peG~WlCrkCi~~  243 (669)
T COG5141         193 DDICTKCTSTHNENSNAIVFCD--GCEICVHQSCYG--IQFLPEGFWLCRKCIYG  243 (669)
T ss_pred             hhhhHhccccccCCcceEEEec--Ccchhhhhhccc--ceecCcchhhhhhhccc
Confidence            6899999986653    99999  999999999999  78999999999999876

>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]

Probab=97.28  E-value=0.00013  Score=67.22  Aligned_cols=47  Identities=30%  Similarity=0.517  Sum_probs=41.1

Q ss_pred             CCCceeeccC---CCCeEEeeCCCCCcccccccccCCCCccCCCCCccccccc
Q 041295           39 EEEPCIKCNR---RDESLLVCIQSGCPISVHENCLSCGVKSDDVGNIYCPYFW   88 (209)
Q Consensus        39 neD~CikC~k---dGq~LL~Cs~~gCPlAvH~kClg~sl~~dd~GnfYCPyC~   88 (209)
                      +=-.|.+|+-   ++| ||+|+  .|-+.||-.||.+++.-.|+|-|.|-.|.
T Consensus       280 eck~csicgtsenddq-llfcd--dcdrgyhmyclsppm~eppegswsc~KOG  329 (336)
T KOG1244|consen  280 ECKYCSICGTSENDDQ-LLFCD--DCDRGYHMYCLSPPMVEPPEGSWSCHLCL  329 (336)
T ss_pred             ecceeccccCcCCCce-eEeec--ccCCceeeEecCCCcCCCCCCchhHHHHH
Confidence            3445667765   677 99999  99999999999999999999999999996

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=97.06  E-value=0.00071  Score=69.31  Aligned_cols=56  Identities=27%  Similarity=0.441  Sum_probs=47.5

Q ss_pred             ccCCCCCCCceeeccCCCCe--EEeeCCCCCccc-ccccccCCCCccCCCCCccccccchh
Q 041295           33 MDVDLLEEEPCIKCNRRDES--LLVCIQSGCPIS-VHENCLSCGVKSDDVGNIYCPYFWYK   90 (209)
Q Consensus        33 ~~~d~~neD~CikC~kdGq~--LL~Cs~~gCPlA-vH~kClg~sl~~dd~GnfYCPyC~yk   90 (209)
                      ......+.--|.+|.....+  ||.|+  +|-.+ ||..||...+.-.+.+-|||+-|..-
T Consensus       208 ~~~~~~E~~~C~IC~~~DpEdVLLLCD--sCN~~~YH~YCLDPdl~eiP~~eWYC~NC~dL  266 (1134)
T KOG0825|consen  208 ISGLSQEEVKCDICTVHDPEDVLLLCD--SCNKVYYHVYCLDPDLSESPVNEWYCTNCSLL  266 (1134)
T ss_pred             ccCcccccccceeeccCChHHhheeec--ccccceeeccccCcccccccccceecCcchhh
Confidence            34444577889999998877  99999  99999 99999998777678999999999843

>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]

Probab=96.94  E-value=0.00056  Score=70.96  Aligned_cols=71  Identities=21%  Similarity=0.318  Sum_probs=53.0

Q ss_pred             hhhhcCCCCCCCcccCCCCCCCceeeccCCCCe----EEeeCCCCCcccccccccCCCCccCCCCCccccccchhhHHH
Q 041295           20 IENHRGSGRSRDFMDVDLLEEEPCIKCNRRDES----LLVCIQSGCPISVHENCLSCGVKSDDVGNIYCPYFWYKCELM   94 (209)
Q Consensus        20 ~~~~~~S~~S~Ds~~~d~~neD~CikC~kdGq~----LL~Cs~~gCPlAvH~kClg~sl~~dd~GnfYCPyC~ykka~e   94 (209)
                      ++..|..--..+..+.+.-++..|.+|.++.-.    +|+|+  +|-++||..|.|  ..|.++|.|.|--|.++.+..
T Consensus       199 ke~~f~~~e~~~~~~~~~~~D~~C~iC~~~~~~n~n~ivfCD--~Cnl~VHq~Cyg--i~~ipeg~WlCr~Cl~s~~~~  273 (1051)
T KOG0955|consen  199 KESYFKNYELGDPKDALLEEDAVCCICLDGECQNSNVIVFCD--GCNLAVHQECYG--IPFIPEGQWLCRRCLQSPQRP  273 (1051)
T ss_pred             HHHHhhhhhccCCCccccCCCccceeecccccCCCceEEEcC--CCcchhhhhccC--CCCCCCCcEeehhhccCcCcc
Confidence            333343333333334555578899999884322    99999  999999999999  789999999999999886544

>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function

Probab=96.87  E-value=0.00051  Score=57.41  Aligned_cols=34  Identities=21%  Similarity=0.283  Sum_probs=29.3

Q ss_pred             cccccccCCCCccCCCCCccccccchhhHHHHHH
Q 041295           64 SVHENCLSCGVKSDDVGNIYCPYFWYKCELMRTK   97 (209)
Q Consensus        64 AvH~kClg~sl~~dd~GnfYCPyC~ykka~eey~   97 (209)
                      .||-.||.++++-.|.|+|+||.|..+.......
T Consensus         1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~~~~~~~~~   34 (148)
T cd04718           1 GFHLCCLRPPLKEVPEGDWICPFCEVEKSGQSAM   34 (148)
T ss_pred             CcccccCCCCCCCCCCCCcCCCCCcCCCCCCccc
Confidence            4899999999999999999999999876555443

BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.

>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A

Probab=96.50  E-value=0.0007  Score=44.12  Aligned_cols=32  Identities=28%  Similarity=0.637  Sum_probs=17.9

Q ss_pred             EEeeCCCCCcccccccccCCCCccCCCCCcccccc
Q 041295           53 LLVCIQSGCPISVHENCLSCGVKSDDVGNIYCPYF   87 (209)
Q Consensus        53 LL~Cs~~gCPlAvH~kClg~sl~~dd~GnfYCPyC   87 (209)
                      ||.|+  +|.++||..|-|.... .+...|+|-.|
T Consensus         4 ll~C~--~C~v~VH~~CYGv~~~-~~~~~W~C~~C   35 (36)
T PF13831_consen    4 LLFCD--NCNVAVHQSCYGVSEV-PDGDDWLCDRC   35 (36)
T ss_dssp             EEE-S--SS--EEEHHHHT-SS---SS-----HHH
T ss_pred             eEEeC--CCCCcCChhhCCcccC-CCCCcEECCcC
Confidence            99999  9999999999997544 34446999877

>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]

Probab=96.37  E-value=0.0018  Score=58.69  Aligned_cols=46  Identities=28%  Similarity=0.667  Sum_probs=38.7

Q ss_pred             CCCceeeccC--CCCeEEeeCCCCCccc-ccccccCCCCccCCCCCccccccc
Q 041295           39 EEEPCIKCNR--RDESLLVCIQSGCPIS-VHENCLSCGVKSDDVGNIYCPYFW   88 (209)
Q Consensus        39 neD~CikC~k--dGq~LL~Cs~~gCPlA-vH~kClg~sl~~dd~GnfYCPyC~   88 (209)
                      ++-.| .|..  =|+ .+-||+-.|++- ||-.|+|  +.-.|.|-||||.|-
T Consensus       220 e~lYC-fCqqvSyGq-MVaCDn~nCkrEWFH~~CVG--Lk~pPKG~WYC~eCk  268 (271)
T COG5034         220 EELYC-FCQQVSYGQ-MVACDNANCKREWFHLECVG--LKEPPKGKWYCPECK  268 (271)
T ss_pred             ceeEE-Eeccccccc-ceecCCCCCchhheeccccc--cCCCCCCcEeCHHhH
Confidence            44455 4665  578 999999999996 9999999  788999999999995

>KOG0956 consensus PHD finger protein AF10 [General function prediction only]

Probab=95.74  E-value=0.0052  Score=62.35  Aligned_cols=44  Identities=23%  Similarity=0.622  Sum_probs=37.0

Q ss_pred             ceeeccC-----CCCeEEeeCCCCCcccccccccCCCCccCCCCCccccccc
Q 041295           42 PCIKCNR-----RDESLLVCIQSGCPISVHENCLSCGVKSDDVGNIYCPYFW   88 (209)
Q Consensus        42 ~CikC~k-----dGq~LL~Cs~~gCPlAvH~kClg~sl~~dd~GnfYCPyC~   88 (209)
                      =|.+|..     +-. |+.||+-.|.+|||.-|-|  ----|.|.|||-.|-
T Consensus         7 GCCVCSDErGWaeNP-LVYCDG~nCsVAVHQaCYG--IvqVPtGpWfCrKCe   55 (900)
T KOG0956|consen    7 GCCVCSDERGWAENP-LVYCDGHNCSVAVHQACYG--IVQVPTGPWFCRKCE   55 (900)
T ss_pred             ceeeecCcCCCccCc-eeeecCCCceeeeehhcce--eEecCCCchhhhhhh
Confidence            4788865     223 9999999999999999999  445789999999996

>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]

Probab=95.60  E-value=0.0032  Score=67.02  Aligned_cols=52  Identities=25%  Similarity=0.520  Sum_probs=46.2

Q ss_pred             CCCceeeccCCCCe--EEeeCCCCCcccccccccCCCCccCCCCCccccccchhhH
Q 041295           39 EEEPCIKCNRRDES--LLVCIQSGCPISVHENCLSCGVKSDDVGNIYCPYFWYKCE   92 (209)
Q Consensus        39 neD~CikC~kdGq~--LL~Cs~~gCPlAvH~kClg~sl~~dd~GnfYCPyC~ykka   92 (209)
                      ..-+|-+|...++-  ++.|+  +|.-.+|-.|+.+-+...+.|+|+||-|.-..-
T Consensus      1107 ~~~~c~~cr~k~~~~~m~lc~--~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~~ 1160 (1404)
T KOG1245|consen 1107 VNALCKVCRRKKQDEKMLLCD--ECLSGFHLFCLRPALSSVPPGDWMCPSCRKEHR 1160 (1404)
T ss_pred             chhhhhhhhhcccchhhhhhH--hhhhhHHHHhhhhhhccCCcCCccCCccchhhh
Confidence            57789999987664  89999  999999999999999999999999999985543

>KOG1512 consensus PHD Zn-finger protein [General function prediction only]

Probab=95.58  E-value=0.0059  Score=56.99  Aligned_cols=46  Identities=22%  Similarity=0.332  Sum_probs=39.1

Q ss_pred             CCCceeeccCCCCe--EEeeCCCCCcccccccccCCCCccCCCCCcccc-ccc
Q 041295           39 EEEPCIKCNRRDES--LLVCIQSGCPISVHENCLSCGVKSDDVGNIYCP-YFW   88 (209)
Q Consensus        39 neD~CikC~kdGq~--LL~Cs~~gCPlAvH~kClg~sl~~dd~GnfYCP-yC~   88 (209)
                      +=.+|++|+..-.+  .|+|+  .|-+.||.-|+|  +.-.|+|.|.|- ||.
T Consensus       313 ~C~lC~IC~~P~~E~E~~FCD--~CDRG~HT~CVG--L~~lP~G~WICD~~C~  361 (381)
T KOG1512|consen  313 SCELCRICLGPVIESEHLFCD--VCDRGPHTLCVG--LQDLPRGEWICDMRCR  361 (381)
T ss_pred             ccHhhhccCCcccchheeccc--cccCCCCccccc--cccccCccchhhhHHH
Confidence            45689999885443  99999  999999999999  788999999997 564

>KOG0954 consensus PHD finger protein [General function prediction only]

Probab=95.04  E-value=0.012  Score=60.12  Aligned_cols=48  Identities=23%  Similarity=0.493  Sum_probs=42.2

Q ss_pred             CCCceeeccCC----CCeEEeeCCCCCcccccccccCCCCccCCCCCccccccchh
Q 041295           39 EEEPCIKCNRR----DESLLVCIQSGCPISVHENCLSCGVKSDDVGNIYCPYFWYK   90 (209)
Q Consensus        39 neD~CikC~kd----Gq~LL~Cs~~gCPlAvH~kClg~sl~~dd~GnfYCPyC~yk   90 (209)
                      |+-+|-+|..+    ++++++|+  -|-+.||..|.|  ..-++.|.|.|--|+.-
T Consensus       270 edviCDvCrspD~e~~neMVfCd--~Cn~cVHqaCyG--Ile~p~gpWlCr~Calg  321 (893)
T KOG0954|consen  270 EDVICDVCRSPDSEEANEMVFCD--KCNICVHQACYG--ILEVPEGPWLCRTCALG  321 (893)
T ss_pred             ccceeceecCCCccccceeEEec--cchhHHHHhhhc--eeecCCCCeeehhcccc
Confidence            77899999987    66699999  999999999999  56678899999888764

>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]

Probab=94.55  E-value=0.019  Score=57.67  Aligned_cols=50  Identities=20%  Similarity=0.365  Sum_probs=42.5

Q ss_pred             CCCceeeccCCCCe--EEeeCCCCCcccccccccCCCCccCCCCCccccccchh
Q 041295           39 EEEPCIKCNRRDES--LLVCIQSGCPISVHENCLSCGVKSDDVGNIYCPYFWYK   90 (209)
Q Consensus        39 neD~CikC~kdGq~--LL~Cs~~gCPlAvH~kClg~sl~~dd~GnfYCPyC~yk   90 (209)
                      .--+|..|+..|+.  +++|+  +|-++||-.|+-+...-.++|-|+||-|.-=
T Consensus        67 ~crvCe~c~~~gD~~kf~~Ck--~cDvsyh~yc~~P~~~~v~sg~~~ckk~~~c  118 (694)
T KOG4443|consen   67 SCRVCEACGTTGDPKKFLLCK--RCDVSYHCYCQKPPNDKVPSGPWLCKKCTRC  118 (694)
T ss_pred             CceeeeeccccCCcccccccc--cccccccccccCCccccccCcccccHHHHhh
Confidence            44567777766654  99999  9999999999999999999999999998743

>KOG0957 consensus PHD finger protein [General function prediction only]

Probab=94.44  E-value=0.025  Score=56.13  Aligned_cols=47  Identities=23%  Similarity=0.415  Sum_probs=42.4

Q ss_pred             CCCceeeccCCCCe--EEeeCCCCCcccccccccCCCCccCCCCC----cccccc
Q 041295           39 EEEPCIKCNRRDES--LLVCIQSGCPISVHENCLSCGVKSDDVGN----IYCPYF   87 (209)
Q Consensus        39 neD~CikC~kdGq~--LL~Cs~~gCPlAvH~kClg~sl~~dd~Gn----fYCPyC   87 (209)
                      -...|.+|.+.-+-  |+.|+  +|-+.||--||.++++-.|..+    |-|..|
T Consensus       543 ~~ysCgiCkks~dQHll~~CD--tC~lhYHlGCL~PPLTR~Pkk~kn~gWqCsEC  595 (707)
T KOG0957|consen  543 MNYSCGICKKSTDQHLLTQCD--TCHLHYHLGCLSPPLTRLPKKNKNFGWQCSEC  595 (707)
T ss_pred             cceeeeeeccchhhHHHhhcc--hhhceeeccccCCccccCcccccCcceeeccc
Confidence            46889999996554  88999  9999999999999999999888    999999

>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain

Probab=94.43  E-value=0.017  Score=41.80  Aligned_cols=48  Identities=19%  Similarity=0.426  Sum_probs=36.2

Q ss_pred             CCCceeeccCC-CCeEEeeCCCCCcccccccccCCCCc---cCCCCCcccccc
Q 041295           39 EEEPCIKCNRR-DESLLVCIQSGCPISVHENCLSCGVK---SDDVGNIYCPYF   87 (209)
Q Consensus        39 neD~CikC~kd-Gq~LL~Cs~~gCPlAvH~kClg~sl~---~dd~GnfYCPyC   87 (209)
                      -...|..|++. |- .+.|...+|...||..|.-....   +++...++-.||
T Consensus        35 ~~~~C~~C~~~~Ga-~i~C~~~~C~~~fH~~CA~~~~~~~~~~~~~~~~~~~C   86 (90)
T PF13771_consen   35 RKLKCSICKKKGGA-CIGCSHPGCSRSFHVPCARKAGCFIEFDEDNGKFRIFC   86 (90)
T ss_pred             hCCCCcCCCCCCCe-EEEEeCCCCCcEEChHHHccCCeEEEEccCCCceEEEC
Confidence            35689999999 98 99999999999999999885332   332234555555

>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]

Probab=94.36  E-value=0.011  Score=62.61  Aligned_cols=57  Identities=16%  Similarity=-0.061  Sum_probs=49.9

Q ss_pred             ccCCCCCCCceeeccCCCCeEEeeCCCCCcccccc-cccC--CCCccCCCCCccccccchhh
Q 041295           33 MDVDLLEEEPCIKCNRRDESLLVCIQSGCPISVHE-NCLS--CGVKSDDVGNIYCPYFWYKC   91 (209)
Q Consensus        33 ~~~d~~neD~CikC~kdGq~LL~Cs~~gCPlAvH~-kClg--~sl~~dd~GnfYCPyC~ykk   91 (209)
                      .+.=|+..+.|++|++++. +|+|. ++||.+||. .||+  .--.+...+-|+||.|..++
T Consensus       421 gr~ywfi~rrl~Ie~~det-~l~yy-sT~pqly~ll~cLd~~~~e~~L~d~i~~~~ee~~rq  480 (1414)
T KOG1473|consen  421 GRKYWFISRRLRIEGMDET-LLWYY-STCPQLYHLLRCLDRTYVEMYLCDGIWERREEIIRQ  480 (1414)
T ss_pred             ccchhceeeeeEEecCCCc-EEEEe-cCcHHHHHHHHHhchHHHHHhhccchhhhHHHHHHh
Confidence            3555889999999999999 99998 379999999 9999  56678899999999999764

>KOG0956 consensus PHD finger protein AF10 [General function prediction only]

Probab=92.50  E-value=0.067  Score=54.68  Aligned_cols=51  Identities=33%  Similarity=0.818  Sum_probs=43.2

Q ss_pred             CCceeeccCCCCe-------EEeeCCCCCcccccccccCC-CCccCCCCCc-----cccccchh
Q 041295           40 EEPCIKCNRRDES-------LLVCIQSGCPISVHENCLSC-GVKSDDVGNI-----YCPYFWYK   90 (209)
Q Consensus        40 eD~CikC~kdGq~-------LL~Cs~~gCPlAvH~kClg~-sl~~dd~Gnf-----YCPyC~yk   90 (209)
                      --.|++|.+.|.+       -+-|...+|-.+||..|.-+ .+-.++.|+.     ||-||.|-
T Consensus       117 nKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~H  180 (900)
T KOG0956|consen  117 NKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKYH  180 (900)
T ss_pred             cceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceeccccccccceechhHHHH
Confidence            4579999998765       78999999999999999875 5777777764     99999985

>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain

Probab=92.13  E-value=0.084  Score=45.65  Aligned_cols=44  Identities=25%  Similarity=0.557  Sum_probs=31.1

Q ss_pred             ceeeccC------CCCeEEeeCCCCCcccccccccCCCCcc------CCCCCc--cccccc
Q 041295           42 PCIKCNR------RDESLLVCIQSGCPISVHENCLSCGVKS------DDVGNI--YCPYFW   88 (209)
Q Consensus        42 ~CikC~k------dGq~LL~Cs~~gCPlAvH~kClg~sl~~------dd~Gnf--YCPyC~   88 (209)
                      .|-.|+.      .|. |+.|-  ||..+||+.|||....-      -...+|  -|-+|.
T Consensus         1 ~C~~C~~~g~~~~kG~-Lv~CQ--GCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Ci   58 (175)
T PF15446_consen    1 TCDTCGYEGDDRNKGP-LVYCQ--GCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCI   58 (175)
T ss_pred             CcccccCCCCCccCCC-eEEcC--ccChHHHhhhcCCccccceeeEEEcCCceEEechhhc
Confidence            3677753      456 99999  99999999999963322      234455  377776

>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]

Probab=91.39  E-value=0.072  Score=51.61  Aligned_cols=56  Identities=20%  Similarity=0.317  Sum_probs=43.3

Q ss_pred             eeeccCCC----CeEEeeCCCCCcccccccccCCC----CccCCCCCccccccchhhHHHHHHHHH
Q 041295           43 CIKCNRRD----ESLLVCIQSGCPISVHENCLSCG----VKSDDVGNIYCPYFWYKCELMRTKELR  100 (209)
Q Consensus        43 CikC~kdG----q~LL~Cs~~gCPlAvH~kClg~s----l~~dd~GnfYCPyC~ykka~eey~elk  100 (209)
                      |.+|.-+|    +.+|.|+  +|---||.-|.-+.    +.=|....|||-.|.+......-..++
T Consensus       171 c~vC~~g~~~~~NrmlqC~--~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~~~~~r~t~~  234 (464)
T KOG4323|consen  171 CSVCYCGGPGAGNRMLQCD--KCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGPKKVPRLTLR  234 (464)
T ss_pred             eeeeecCCcCccceeeeec--ccccHHHHHhccCCCCHhhccCccceEeehhhccchhhccccccc
Confidence            99987433    3399999  99999999998863    234667889999999987766655554

>KOG4299 consensus PHD Zn-finger protein [General function prediction only]

Probab=90.61  E-value=0.17  Score=50.68  Aligned_cols=60  Identities=20%  Similarity=0.202  Sum_probs=46.0

Q ss_pred             hhhcCCCCCCCcccCCCCCCCceeeccCCCCeEEeeCCCCCcccccccccCCCCccCCCCCccccccc
Q 041295           21 ENHRGSGRSRDFMDVDLLEEEPCIKCNRRDESLLVCIQSGCPISVHENCLSCGVKSDDVGNIYCPYFW   88 (209)
Q Consensus        21 ~~~~~S~~S~Ds~~~d~~neD~CikC~kdGq~LL~Cs~~gCPlAvH~kClg~sl~~dd~GnfYCPyC~   88 (209)
                      +++|+|+.+. .+...|  -..|-.|..+|+ +++|.  .||.++|..|....+.  +.-.++|--|.
T Consensus        31 ~~ar~s~~~~-~~~~k~--~ts~~~~~~~gn-~~~~~--~~~~s~h~~~~~~~~s--p~~~~~~~~~~   90 (613)
T KOG4299|consen   31 RRARKSEKEN-RRSGKA--ATSCGICKSGGN-LLCCD--HCPASFHLECDKPPLS--PDLKGSEINCS   90 (613)
T ss_pred             hccccccccc-ccccch--hhhcchhhhcCC-ccccc--cCccccchhccCcccC--ccccccccccc
Confidence            4448888873 434444  899999999999 99999  9999999999996544  66666665554

>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]

Probab=90.58  E-value=0.17  Score=54.11  Aligned_cols=49  Identities=22%  Similarity=0.362  Sum_probs=44.4

Q ss_pred             CCCCceeeccCCCCeEEeeCCCCCcccccccccCCCCccCCCCCccccccch
Q 041295           38 LEEEPCIKCNRRDESLLVCIQSGCPISVHENCLSCGVKSDDVGNIYCPYFWY   89 (209)
Q Consensus        38 ~neD~CikC~kdGq~LL~Cs~~gCPlAvH~kClg~sl~~dd~GnfYCPyC~y   89 (209)
                      .=.|.|-.|.+.|. ||||-  +||+.||-+|+-.+.---++..|-|-+|.+
T Consensus       342 ~~ddhcrf~~d~~~-~lc~E--t~prvvhlEcv~hP~~~~~s~~~e~evc~~  390 (1414)
T KOG1473|consen  342 EYDDHCRFCHDLGD-LLCCE--TCPRVVHLECVFHPRFAVPSAFWECEVCNI  390 (1414)
T ss_pred             eecccccccCcccc-eeecc--cCCceEEeeecCCccccCCCccchhhhhhh
Confidence            35789999999999 99999  999999999999887778899999999974

>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain

Probab=90.57  E-value=0.12  Score=38.77  Aligned_cols=33  Identities=21%  Similarity=0.599  Sum_probs=29.0

Q ss_pred             CCCceeeccCC-CCeEEeeCCCCCcccccccccCC
Q 041295           39 EEEPCIKCNRR-DESLLVCIQSGCPISVHENCLSC   72 (209)
Q Consensus        39 neD~CikC~kd-Gq~LL~Cs~~gCPlAvH~kClg~   72 (209)
                      ....|..|+.. |- ++.|+..+|..+||..|+-.
T Consensus        54 ~~~~C~iC~~~~G~-~i~C~~~~C~~~fH~~CA~~   87 (110)
T PF13832_consen   54 FKLKCSICGKSGGA-CIKCSHPGCSTAFHPTCARK   87 (110)
T ss_pred             cCCcCcCCCCCCce-eEEcCCCCCCcCCCHHHHHH
Confidence            46799999995 66 99999888999999999864

>KOG0957 consensus PHD finger protein [General function prediction only]

Probab=83.61  E-value=1.4  Score=44.37  Aligned_cols=49  Identities=27%  Similarity=0.518  Sum_probs=36.8

Q ss_pred             CCCceeeccC-----CCCeEEeeCCCCCcccccccccCCC-----CccCCC---CCccccccchh
Q 041295           39 EEEPCIKCNR-----RDESLLVCIQSGCPISVHENCLSCG-----VKSDDV---GNIYCPYFWYK   90 (209)
Q Consensus        39 neD~CikC~k-----dGq~LL~Cs~~gCPlAvH~kClg~s-----l~~dd~---GnfYCPyC~yk   90 (209)
                      .-.+|-+|-.     .|+ +|.|+  .|-+.||..|-|+.     +...+.   ..|||--|.|-
T Consensus       118 k~~iCcVClg~rs~da~e-i~qCd--~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~G  179 (707)
T KOG0957|consen  118 KAVICCVCLGQRSVDAGE-ILQCD--KCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYG  179 (707)
T ss_pred             cceEEEEeecCccccccc-eeecc--ccCceecccccccccccccCCCCccCCCCchhhhhHhcC
Confidence            4458999954     455 99999  99999999999974     222222   67999888764

>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]

Probab=81.56  E-value=1.4  Score=42.35  Aligned_cols=43  Identities=19%  Similarity=0.384  Sum_probs=34.8

Q ss_pred             CCCcccCCCCCCCceeeccCCCCeEEeeC------CCCCcccccccccCC
Q 041295           29 SRDFMDVDLLEEEPCIKCNRRDESLLVCI------QSGCPISVHENCLSC   72 (209)
Q Consensus        29 S~Ds~~~d~~neD~CikC~kdGq~LL~Cs------~~gCPlAvH~kClg~   72 (209)
                      ..+..-..-.+.+.|-+|.++|. |+.|+      ...||.++|..|...
T Consensus        78 ~~~~~~~~~~~~~~c~vc~~ggs-~v~~~s~~~~~~r~c~~~~~~~c~~~  126 (463)
T KOG1081|consen   78 EPGSRRHPKIEPSECFVCFKGGS-LVTCKSRIQAPHRKCKPAQLEKCSKR  126 (463)
T ss_pred             CCCchhccCCCcchhccccCCCc-cceeccccccccccCcCccCcccccC
Confidence            44445555568999999999999 99999      788888888888875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	209
1xwh_A	66	Autoimmune regulator; PHD domain, Zn binding domai	99.37
2puy_A	60	PHD finger protein 21A; PHD finger, histone CODE,	99.33
1fp0_A	88	KAP-1 corepressor; PHD domain, C3HC4 type zinc bin	99.32
1mm2_A	61	MI2-beta; PHD, zinc finger, protein scaffold, DNA	99.31
2yql_A	56	PHD finger protein 21A; PHD domain, structural gen	99.31
2l5u_A	61	Chromodomain-helicase-DNA-binding protein 4; CHD4,	99.29
2lri_C	66	Autoimmune regulator; Zn binding protein domain, a	99.26
2e6r_A	92	Jumonji/ARID domain-containing protein 1D; PHD dom	99.24
3o36_A	184	Transcription intermediary factor 1-alpha; TRIM24,	99.23
2yt5_A	66	Metal-response element-binding transcription facto	99.22
3u5n_A	207	E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b	99.21
2l43_A	88	N-teminal domain from histone H3.3, linker, PHD1 f	99.15
1wev_A	88	Riken cDNA 1110020M19; structural genomics, PHD do	99.14
2ku3_A	71	Bromodomain-containing protein 1; PHD finger, chro	99.14
2ro1_A	189	Transcription intermediary factor 1-beta; KAP, TIF	99.08
1f62_A	51	Transcription factor WSTF; Zn-finger; NMR {Homo sa	99.02
4gne_A	107	Histone-lysine N-methyltransferase NSD3; zinc fing	99.02
2lbm_A	142	Transcriptional regulator ATRX; metal binding prot	98.99
2e6s_A	77	E3 ubiquitin-protein ligase UHRF2; PHD domain, str	98.95
3asl_A	70	E3 ubiquitin-protein ligase UHRF1; histone reader	98.87
2k16_A	75	Transcription initiation factor TFIID subunit 3; p	98.8
1wen_A	71	Inhibitor of growth family, member 4; ING1-like pr	98.8
2kwj_A	114	Zinc finger protein DPF3; acetyl-lysine, transcrip	98.79
2ysm_A	111	Myeloid/lymphoid or mixed-lineage leukemia protein	98.78
3shb_A	77	E3 ubiquitin-protein ligase UHRF1; unmodified hist	98.77
3v43_A	112	Histone acetyltransferase KAT6A; MOZ, PHD finger,	98.76
3ask_A	226	E3 ubiquitin-protein ligase UHRF1; histone reader	98.7
2ysm_A	111	Myeloid/lymphoid or mixed-lineage leukemia protein	98.66
3c6w_A	59	P28ING5, inhibitor of growth protein 5; chromatin,	98.66
3ql9_A	129	Transcriptional regulator ATRX; zinc finger, trans	98.64
2vnf_A	60	ING 4, P29ING4, inhibitor of growth protein 4; ace	98.59
2g6q_A	62	Inhibitor of growth protein 2; protein-peptide com	98.5
1weu_A	91	Inhibitor of growth family, member 4; structural g	98.47
2lv9_A	98	Histone-lysine N-methyltransferase MLL5; zinc fing	98.32
2jmi_A	90	Protein YNG1, ING1 homolog 1; PHD, histone, recogn	98.21
2kwj_A	114	Zinc finger protein DPF3; acetyl-lysine, transcrip	98.15
3v43_A	112	Histone acetyltransferase KAT6A; MOZ, PHD finger,	97.94
1x4i_A	70	Inhibitor of growth protein 3; structural genomics	97.86
1wil_A	89	KIAA1045 protein; ring finger domain, structural g	97.81
2ri7_A	174	Nucleosome-remodeling factor subunit BPTF; zinc fi	97.74
1wew_A	78	DNA-binding family protein; structural genomics, P	97.71
1we9_A	64	PHD finger family protein; structural genomics, PH	97.61
1wee_A	72	PHD finger family protein; structural genomics, PH	97.58
2rsd_A	68	E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant	97.47
2xb1_A	105	Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro;	97.44
3o70_A	68	PHD finger protein 13; PHF13, structural genomics	97.14
1wem_A	76	Death associated transcription factor 1; structura	97.06
3o7a_A	52	PHD finger protein 13 variant; PHF13, zinc finger,	96.71
1wep_A	79	PHF8; structural genomics, PHD domain, riken struc	96.28
2vpb_A	65	Hpygo1, pygopus homolog 1; gene regulation, WNT si	96.27
2kgg_A	52	Histone demethylase jarid1A; PHD finger, histone m	95.96
3lqh_A	183	Histone-lysine N-methyltransferase MLL; PHD finger	95.43
3kqi_A	75	GRC5, PHD finger protein 2; metal-binding, zinc-fi	94.48
3pur_A	528	Lysine-specific demethylase 7 homolog; oxidoreduct	94.4
4bbq_A	117	Lysine-specific demethylase 2A; oxidoreductase, ub	94.34
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	93.69
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	93.5
4gne_A	107	Histone-lysine N-methyltransferase NSD3; zinc fing	93.48
3kv5_D	488	JMJC domain-containing histone demethylation prote	92.06
3a1b_A	159	DNA (cytosine-5)-methyltransferase 3A, histone H3;	91.95
2pv0_B	386	DNA (cytosine-5)-methyltransferase 3-like; DNMT3L,	89.73
3kv4_A	447	PHD finger protein 8; epigenetics, histone CODE, c	87.94
2lq6_A	87	Bromodomain-containing protein 1; PHD finger, meta	83.51

>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A

Probab=99.37  E-value=2.5e-13  Score=95.36  Aligned_cols=53  Identities=28%  Similarity=0.563  Sum_probs=48.4

Q ss_pred             CCCCCCceeeccCCCCeEEeeCCCCCcccccccccCCCCccCCCCCccccccchhh
Q 041295           36 DLLEEEPCIKCNRRDESLLVCIQSGCPISVHENCLSCGVKSDDVGNIYCPYFWYKC   91 (209)
Q Consensus        36 d~~neD~CikC~kdGq~LL~Cs~~gCPlAvH~kClg~sl~~dd~GnfYCPyC~ykk   91 (209)
                      ...+++.|.+|+.+|+ ||+|+  +||.+||..|+++++...+.|.||||.|..++
T Consensus         4 ~~~~~~~C~vC~~~g~-ll~CD--~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~   56 (66)
T 1xwh_A            4 AQKNEDECAVCRDGGE-LICCD--GCPRAFHLACLSPPLREIPSGTWRCSSCLQAT   56 (66)
T ss_dssp             CCSCCCSBSSSSCCSS-CEECS--SCCCEECTTTSSSCCSSCCSSCCCCHHHHHTC
T ss_pred             CCCCCCCCccCCCCCC-EEEcC--CCChhhcccccCCCcCcCCCCCeECccccCcc
Confidence            3458899999999999 99999  99999999999998888899999999998654

>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}

Probab=99.33  E-value=5e-13  Score=91.92  Aligned_cols=51  Identities=27%  Similarity=0.549  Sum_probs=47.0

Q ss_pred             CCCCceeeccCCCCeEEeeCCCCCcccccccccCCCCccCCCCCccccccchhh
Q 041295           38 LEEEPCIKCNRRDESLLVCIQSGCPISVHENCLSCGVKSDDVGNIYCPYFWYKC   91 (209)
Q Consensus        38 ~neD~CikC~kdGq~LL~Cs~~gCPlAvH~kClg~sl~~dd~GnfYCPyC~ykk   91 (209)
                      .+++.|.+|+..|+ ||.|+  +||.+||..|+++++...|.|.||||.|..+.
T Consensus         3 ~~~~~C~vC~~~g~-ll~Cd--~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~   53 (60)
T 2puy_A            3 IHEDFCSVCRKSGQ-LLMCD--TCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM   53 (60)
T ss_dssp             CCCSSCTTTCCCSS-CEECS--SSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred             CCCCCCcCCCCCCc-EEEcC--CCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence            37899999999999 99999  99999999999999998999999999997543

>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2

Probab=99.32  E-value=1.3e-12  Score=98.45  Aligned_cols=55  Identities=15%  Similarity=0.272  Sum_probs=49.4

Q ss_pred             cCCCCCCCceeeccCCCCeEEeeCCCCCcccccccccCCCCccCCCCCccccccchhh
Q 041295           34 DVDLLEEEPCIKCNRRDESLLVCIQSGCPISVHENCLSCGVKSDDVGNIYCPYFWYKC   91 (209)
Q Consensus        34 ~~d~~neD~CikC~kdGq~LL~Cs~~gCPlAvH~kClg~sl~~dd~GnfYCPyC~ykk   91 (209)
                      .....+++.|.+|+.+|+ ||+|+  +||.+||..|+.+++...|.|+||||.|.+..
T Consensus        19 ~~~d~n~~~C~vC~~~g~-LL~CD--~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~   73 (88)
T 1fp0_A           19 GTLDDSATICRVCQKPGD-LVMCN--QCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP   73 (88)
T ss_dssp             CSSSSSSSCCSSSCSSSC-CEECT--TSSCEECTTSSSTTCCCCCSSSCCCCSCCCCC
T ss_pred             cccCCCCCcCcCcCCCCC-EEECC--CCCCceecccCCCCCCCCcCCCcCCccccCCC
Confidence            344458899999999999 99999  99999999999999999999999999998653

>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A

Probab=99.31  E-value=1e-12  Score=91.32  Aligned_cols=51  Identities=31%  Similarity=0.526  Sum_probs=47.1

Q ss_pred             CCCCceeeccCCCCeEEeeCCCCCcccccccccCCCCccCCCCCccccccchhh
Q 041295           38 LEEEPCIKCNRRDESLLVCIQSGCPISVHENCLSCGVKSDDVGNIYCPYFWYKC   91 (209)
Q Consensus        38 ~neD~CikC~kdGq~LL~Cs~~gCPlAvH~kClg~sl~~dd~GnfYCPyC~ykk   91 (209)
                      .+++.|.+|+.+|+ ||+|+  +|+.+||..|+.+++...+.|+||||.|..+.
T Consensus         7 ~~~~~C~vC~~~g~-ll~Cd--~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~   57 (61)
T 1mm2_A            7 HHMEFCRVCKDGGE-LLCCD--TCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA   57 (61)
T ss_dssp             SSCSSCTTTCCCSS-CBCCS--SSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred             CCCCcCCCCCCCCC-EEEcC--CCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence            47899999999999 99999  99999999999998888999999999998653

>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=1e-12  Score=89.45  Aligned_cols=50  Identities=28%  Similarity=0.494  Sum_probs=46.3

Q ss_pred             CCCCCceeeccCCCCeEEeeCCCCCcccccccccCCCCccCCCCCccccccch
Q 041295           37 LLEEEPCIKCNRRDESLLVCIQSGCPISVHENCLSCGVKSDDVGNIYCPYFWY   89 (209)
Q Consensus        37 ~~neD~CikC~kdGq~LL~Cs~~gCPlAvH~kClg~sl~~dd~GnfYCPyC~y   89 (209)
                      ..+++.|.+|+..|+ ||.|+  +||.+||..|+.+++...+.|.||||.|..
T Consensus         6 ~~~~~~C~vC~~~g~-ll~Cd--~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~   55 (56)
T 2yql_A            6 SGHEDFCSVCRKSGQ-LLMCD--TCSRVYHLDCLDPPLKTIPKGMWICPRCQD   55 (56)
T ss_dssp             CSSCCSCSSSCCSSC-CEECS--SSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred             CCCCCCCccCCCCCe-EEEcC--CCCcceECccCCCCcCCCCCCceEChhhhC
Confidence            457899999999999 99999  999999999999999989999999999963

>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}

Probab=99.29  E-value=1.5e-12  Score=90.46  Aligned_cols=51  Identities=24%  Similarity=0.524  Sum_probs=46.8

Q ss_pred             CCCCCceeeccCCCCeEEeeCCCCCcccccccccCCCCccCCCCCccccccchh
Q 041295           37 LLEEEPCIKCNRRDESLLVCIQSGCPISVHENCLSCGVKSDDVGNIYCPYFWYK   90 (209)
Q Consensus        37 ~~neD~CikC~kdGq~LL~Cs~~gCPlAvH~kClg~sl~~dd~GnfYCPyC~yk   90 (209)
                      ..+++.|.+|+.+|+ ||.|+  +||.+||..|++.+++..+.|.||||.|..+
T Consensus         8 ~~~~~~C~vC~~~g~-ll~CD--~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~   58 (61)
T 2l5u_A            8 TDHQDYCEVCQQGGE-IILCD--TCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE   58 (61)
T ss_dssp             SCCCSSCTTTSCCSS-EEECS--SSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred             CCCCCCCccCCCCCc-EEECC--CCChhhhhhccCCCCCCCCCCceECcccccc
Confidence            347889999999999 99999  9999999999999888889999999999864

>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}

Probab=99.26  E-value=2e-12  Score=92.01  Aligned_cols=51  Identities=20%  Similarity=0.320  Sum_probs=46.4

Q ss_pred             CCCCCCceeeccCCCCeEEeeCCCCCcccccccccCCCCccCCCCCccccccch
Q 041295           36 DLLEEEPCIKCNRRDESLLVCIQSGCPISVHENCLSCGVKSDDVGNIYCPYFWY   89 (209)
Q Consensus        36 d~~neD~CikC~kdGq~LL~Cs~~gCPlAvH~kClg~sl~~dd~GnfYCPyC~y   89 (209)
                      .+.+...|.+|+.+|+ ||+|+  +|+.+||..|+.+++...+.|+||||.|.-
T Consensus         8 ~~~~~~~C~vC~~~~~-ll~Cd--~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~   58 (66)
T 2lri_C            8 NLAPGARCGVCGDGTD-VLRCT--HCAAAFHWRCHFPAGTSRPGTGLRCRSCSG   58 (66)
T ss_dssp             CCCTTCCCTTTSCCTT-CEECS--SSCCEECHHHHCTTTCCCCSSSCCCTTTTT
T ss_pred             CCCCCCCcCCCCCCCe-EEECC--CCCCceecccCCCccCcCCCCCEECccccC
Confidence            3446778999999999 99999  999999999999999999999999999964

>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.24  E-value=4.5e-12  Score=94.53  Aligned_cols=62  Identities=29%  Similarity=0.464  Sum_probs=52.0

Q ss_pred             CCCCCCcccCCCCCCCceeeccCCCC--eEEeeCCCCCcccccccccCCCCccCCCCCccccccch
Q 041295           26 SGRSRDFMDVDLLEEEPCIKCNRRDE--SLLVCIQSGCPISVHENCLSCGVKSDDVGNIYCPYFWY   89 (209)
Q Consensus        26 S~~S~Ds~~~d~~neD~CikC~kdGq--~LL~Cs~~gCPlAvH~kClg~sl~~dd~GnfYCPyC~y   89 (209)
                      |+-+.........+++.|.+|+..+.  .||+|+  +|+.+||..|+++++...|.|.||||.|..
T Consensus         2 ~~~~~~~s~~~~~~~~~C~vC~~~~~~~~ll~CD--~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~   65 (92)
T 2e6r_A            2 SSGSSGHSSAQFIDSYICQVCSRGDEDDKLLFCD--GCDDNYHIFCLLPPLPEIPRGIWRCPKCIL   65 (92)
T ss_dssp             CCSSCCCCCCCCCCCCCCSSSCCSGGGGGCEECT--TTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred             CCCCCCCchhhccCCCCCccCCCcCCCCCEEEcC--CCCchhccccCCCCcccCCCCCcCCccCcC
Confidence            44444445566678899999999873  299999  999999999999999999999999999964

>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A

Probab=99.23  E-value=4e-12  Score=102.32  Aligned_cols=51  Identities=25%  Similarity=0.494  Sum_probs=47.5

Q ss_pred             CCCCceeeccCCCCeEEeeCCCCCcccccccccCCCCccCCCCCccccccchhh
Q 041295           38 LEEEPCIKCNRRDESLLVCIQSGCPISVHENCLSCGVKSDDVGNIYCPYFWYKC   91 (209)
Q Consensus        38 ~neD~CikC~kdGq~LL~Cs~~gCPlAvH~kClg~sl~~dd~GnfYCPyC~ykk   91 (209)
                      .|++.|.+|+.+|+ ||+|+  +||.+||..|+.+++...+.|.|+||.|.-..
T Consensus         2 ~~~~~C~~C~~~g~-ll~Cd--~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~   52 (184)
T 3o36_A            2 PNEDWCAVCQNGGE-LLCCE--KCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS   52 (184)
T ss_dssp             CSCSSCTTTCCCSS-CEECS--SSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred             CCCCccccCCCCCe-eeecC--CCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence            37899999999999 99999  99999999999998998999999999998764

>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}

Probab=99.22  E-value=2.3e-12  Score=89.14  Aligned_cols=55  Identities=18%  Similarity=0.407  Sum_probs=47.2

Q ss_pred             CCCCCCceeeccCC-----CCeEEeeCCCCCcccccccccCCCCcc---CCCCCccccccchhhHH
Q 041295           36 DLLEEEPCIKCNRR-----DESLLVCIQSGCPISVHENCLSCGVKS---DDVGNIYCPYFWYKCEL   93 (209)
Q Consensus        36 d~~neD~CikC~kd-----Gq~LL~Cs~~gCPlAvH~kClg~sl~~---dd~GnfYCPyC~ykka~   93 (209)
                      ++.+++.|.+|+.+     ++ ||+|+  +|+.+||..|+++++..   .+.|.||||.|..+.+.
T Consensus         2 ~~~~~~~C~vC~~~~~~~~~~-ll~Cd--~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~~   64 (66)
T 2yt5_A            2 SSGSSGVCTICQEEYSEAPNE-MVICD--KCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTT   64 (66)
T ss_dssp             CCCCCCCBSSSCCCCCBTTBC-EEECS--SSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTSC
T ss_pred             CCCCCCCCCCCCCCCCCCCCC-EEECC--CCChHHHhhhCCCcccccccCCCCCEECCCCcCcccc
Confidence            35688999999987     67 99999  99999999999987664   38999999999876543

>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*

Probab=99.21  E-value=5.9e-12  Score=103.44  Aligned_cols=53  Identities=25%  Similarity=0.439  Sum_probs=48.4

Q ss_pred             CCCCCceeeccCCCCeEEeeCCCCCcccccccccCCCCccCCCCCccccccchhhH
Q 041295           37 LLEEEPCIKCNRRDESLLVCIQSGCPISVHENCLSCGVKSDDVGNIYCPYFWYKCE   92 (209)
Q Consensus        37 ~~neD~CikC~kdGq~LL~Cs~~gCPlAvH~kClg~sl~~dd~GnfYCPyC~ykka   92 (209)
                      ..+++.|.+|+.+|+ ||+|+  +||.+||..|+.+++...|.|+||||.|.-...
T Consensus         4 d~~~~~C~~C~~~g~-ll~Cd--~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~   56 (207)
T 3u5n_A            4 DPNEDWCAVCQNGGD-LLCCE--KCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGK   56 (207)
T ss_dssp             CSSCSSBTTTCCCEE-EEECS--SSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred             CCCCCCCCCCCCCCc-eEEcC--CCCCccCCccCCCCCCCCCCCCEEeCceeCccc
Confidence            347899999999999 99999  999999999999999999999999999987543

>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}

Probab=99.15  E-value=1.4e-11  Score=91.39  Aligned_cols=52  Identities=21%  Similarity=0.411  Sum_probs=44.8

Q ss_pred             CCCCCCceeeccCCC-----CeEEeeCCCCCcccccccccCCCCccCCCCCccccccchhhH
Q 041295           36 DLLEEEPCIKCNRRD-----ESLLVCIQSGCPISVHENCLSCGVKSDDVGNIYCPYFWYKCE   92 (209)
Q Consensus        36 d~~neD~CikC~kdG-----q~LL~Cs~~gCPlAvH~kClg~sl~~dd~GnfYCPyC~ykka   92 (209)
                      ..-+++.|.+|+.+|     + ||+|+  +|+++||..|++.+  ..|.|.||||.|.....
T Consensus        21 ~~~~~~~C~vC~~~~s~~~~~-ll~CD--~C~~~fH~~Cl~p~--~vP~g~W~C~~C~~~~~   77 (88)
T 2l43_A           21 LIDEDAVCSICMDGESQNSNV-ILFCD--MCNLAVHQECYGVP--YIPEGQWLCRHCLQSRA   77 (88)
T ss_dssp             CCCCCCCCSSCCSSSSCSEEE-EEECS--SSCCCCCHHHHTCS--SCCSSCCCCHHHHHHTT
T ss_pred             cCCCCCcCCcCCCCCCCCCCC-EEECC--CCCchhhcccCCCC--ccCCCceECccccCccc
Confidence            344789999999987     6 99999  99999999999965  47889999999987643

>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2

Probab=99.14  E-value=1.2e-11  Score=91.51  Aligned_cols=51  Identities=22%  Similarity=0.438  Sum_probs=44.7

Q ss_pred             CCCceeeccCC-----CCeEEeeCCCCCcccccccccCCCCcc----CCCCCccccccchhhH
Q 041295           39 EEEPCIKCNRR-----DESLLVCIQSGCPISVHENCLSCGVKS----DDVGNIYCPYFWYKCE   92 (209)
Q Consensus        39 neD~CikC~kd-----Gq~LL~Cs~~gCPlAvH~kClg~sl~~----dd~GnfYCPyC~ykka   92 (209)
                      +++.|.+|+..     ++ ||+|+  +|+.+||..|+.+++.-    .+.|.||||.|..+..
T Consensus        15 ~~~~C~vC~~~~~~~~~~-ll~CD--~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~   74 (88)
T 1wev_A           15 MGLACVVCRQMTVASGNQ-LVECQ--ECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK   74 (88)
T ss_dssp             HCCSCSSSCCCCCCTTCC-EEECS--SSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred             CCCcCCCCCCCCCCCCCc-eEECC--CCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence            67899999987     56 99999  99999999999987773    7999999999986544

>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}

Probab=99.14  E-value=1.5e-11  Score=88.46  Aligned_cols=53  Identities=21%  Similarity=0.397  Sum_probs=45.1

Q ss_pred             CCCCCCCceeeccCCC-----CeEEeeCCCCCcccccccccCCCCccCCCCCccccccchhhH
Q 041295           35 VDLLEEEPCIKCNRRD-----ESLLVCIQSGCPISVHENCLSCGVKSDDVGNIYCPYFWYKCE   92 (209)
Q Consensus        35 ~d~~neD~CikC~kdG-----q~LL~Cs~~gCPlAvH~kClg~sl~~dd~GnfYCPyC~ykka   92 (209)
                      ....+++.|.+|+.++     + ||+|+  +|+++||..|++.+  ..|.|+||||.|..++.
T Consensus        11 ~~~~~~~~C~vC~~~~s~~~~~-ll~CD--~C~~~~H~~Cl~~~--~vP~g~W~C~~C~~~~~   68 (71)
T 2ku3_A           11 SLIDEDAVCSICMDGESQNSNV-ILFCD--MCNLAVHQECYGVP--YIPEGQWLCRHCLQSRA   68 (71)
T ss_dssp             CCCCSSCSCSSSCCCCCCSSSC-EEECS--SSCCEEEHHHHTCS--SCCSSCCCCHHHHHHHH
T ss_pred             cCCCCCCCCCCCCCCCCCCCCC-EEECC--CCCCccccccCCCC--cCCCCCcCCccCcCcCc
Confidence            3445889999999876     5 99999  99999999999964  47899999999987653

>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}

Probab=99.08  E-value=4.1e-11  Score=98.33  Aligned_cols=48  Identities=17%  Similarity=0.414  Sum_probs=45.3

Q ss_pred             CCceeeccCCCCeEEeeCCCCCcccccccccCCCCccCCCCCccccccchh
Q 041295           40 EEPCIKCNRRDESLLVCIQSGCPISVHENCLSCGVKSDDVGNIYCPYFWYK   90 (209)
Q Consensus        40 eD~CikC~kdGq~LL~Cs~~gCPlAvH~kClg~sl~~dd~GnfYCPyC~yk   90 (209)
                      ++.|.+|+.+|+ ||+|+  +||.+||..|+.+++...+.|+|+||.|..+
T Consensus         2 ~~~C~~C~~~g~-ll~Cd--~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~   49 (189)
T 2ro1_A            2 ATICRVCQKPGD-LVMCN--QCEFCFHLDCHLPALQDVPGEEWSCSLCHVL   49 (189)
T ss_dssp             CCCBTTTCCCSS-CCCCT--TTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred             CCcCccCCCCCc-eeECC--CCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence            578999999999 99999  9999999999998888889999999999876

>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2

Probab=99.02  E-value=6.6e-11  Score=78.46  Aligned_cols=46  Identities=26%  Similarity=0.533  Sum_probs=40.5

Q ss_pred             ceeeccCCCC--eEEeeCCCCCcccccccccCCCCccCCCCCccccccch
Q 041295           42 PCIKCNRRDE--SLLVCIQSGCPISVHENCLSCGVKSDDVGNIYCPYFWY   89 (209)
Q Consensus        42 ~CikC~kdGq--~LL~Cs~~gCPlAvH~kClg~sl~~dd~GnfYCPyC~y   89 (209)
                      .|.+|+..|+  .||.|+  +|+.+||..|+.+++...|.|.||||.|..
T Consensus         2 ~C~vC~~~~~~~~ll~Cd--~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~   49 (51)
T 1f62_A            2 RCKVCRKKGEDDKLILCD--ECNKAFHLFCLRPALYEVPDGEWQCPACQP   49 (51)
T ss_dssp             CCTTTCCSSCCSCCEECT--TTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred             CCCCCCCCCCCCCEEECC--CCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence            5889997652  299999  999999999999888888999999999963

>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*

Probab=99.02  E-value=1.6e-10  Score=89.23  Aligned_cols=52  Identities=27%  Similarity=0.685  Sum_probs=46.0

Q ss_pred             CCCCCCceeeccCCCCeEEeeCCCCCcccccccccCCCCccCCCCCccccccchh
Q 041295           36 DLLEEEPCIKCNRRDESLLVCIQSGCPISVHENCLSCGVKSDDVGNIYCPYFWYK   90 (209)
Q Consensus        36 d~~neD~CikC~kdGq~LL~Cs~~gCPlAvH~kClg~sl~~dd~GnfYCPyC~yk   90 (209)
                      ...+++.|.+|+.+|+ ||.|+..+||.+||..|++  +...+.|+||||.|...
T Consensus        11 ~~~~~~~C~~C~~~G~-ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~   62 (107)
T 4gne_A           11 KQMHEDYCFQCGDGGE-LVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCD   62 (107)
T ss_dssp             CCSSCSSCTTTCCCSE-EEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCT
T ss_pred             cCCCCCCCCcCCCCCc-EeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCC
Confidence            3458999999999998 9999977899999999999  77788999999988643

>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A

Probab=98.99  E-value=1.9e-10  Score=92.94  Aligned_cols=74  Identities=16%  Similarity=0.266  Sum_probs=56.7

Q ss_pred             CCCCCCceeeccCCCCeEEeeCCCCCcccccccccCCCCc------c-CCCCCccccccchhhHHHHHHHHHHHHHHHHH
Q 041295           36 DLLEEEPCIKCNRRDESLLVCIQSGCPISVHENCLSCGVK------S-DDVGNIYCPYFWYKCELMRTKELRKKAMETKK  108 (209)
Q Consensus        36 d~~neD~CikC~kdGq~LL~Cs~~gCPlAvH~kClg~sl~------~-dd~GnfYCPyC~ykka~eey~elkKkA~~AKK  108 (209)
                      +..+++.|.+|+.+|+ ||+|+  +||.+||..|+.+++.      . .+.|+|+||.|..+..    ..+++...+.-+
T Consensus        59 ~Dg~~d~C~vC~~GG~-LlcCD--~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~pl----~~l~~~c~~~~~  131 (142)
T 2lbm_A           59 SDGMDEQCRWCAEGGN-LICCD--FCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPEPL----LDLVTACNSVFE  131 (142)
T ss_dssp             TTSCBCSCSSSCCCSS-EEECS--SSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCCTT----HHHHHHHHHHHH
T ss_pred             CCCCCCeecccCCCCc-EEeCC--CCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCccH----HHHHHHHHHHHH
Confidence            3557999999999999 99999  9999999999996654      1 5899999999986533    334555555555


Q ss_pred             HHHhhcCC
Q 041295          109 QLACFIDP  116 (209)
Q Consensus       109 ~Ls~Fl~~  116 (209)
                      .|..++.+
T Consensus       132 ~~~~~~~~  139 (142)
T 2lbm_A          132 NLEQLLQQ  139 (142)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHHhc
Confidence            56665543

>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.95  E-value=5e-10  Score=81.63  Aligned_cols=47  Identities=23%  Similarity=0.480  Sum_probs=42.5

Q ss_pred             CCCceeeccC---CCCeEEeeCCCCCcccccccccCCCCccCCCC-Cccccccc
Q 041295           39 EEEPCIKCNR---RDESLLVCIQSGCPISVHENCLSCGVKSDDVG-NIYCPYFW   88 (209)
Q Consensus        39 neD~CikC~k---dGq~LL~Cs~~gCPlAvH~kClg~sl~~dd~G-nfYCPyC~   88 (209)
                      .+..|.+|+.   +|+ ||+|+  +|+.+||..|+.+++...|.| +||||.|.
T Consensus        25 ~~c~C~vC~~~~~~~~-ll~CD--~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~   75 (77)
T 2e6s_A           25 HSCSCRVCGGKHEPNM-QLLCD--ECNVAYHIYCLNPPLDKVPEEEYWYCPSCK   75 (77)
T ss_dssp             SSSSCSSSCCCCCSTT-EEECS--SSCCEEETTSSSSCCSSCCCSSCCCCTTTC
T ss_pred             CCCCCcCcCCcCCCCC-EEEcC--CCCccccccccCCCccCCCCCCCcCCcCcc
Confidence            4558999996   556 99999  999999999999999999999 99999996

>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B

Probab=98.87  E-value=7.5e-10  Score=79.07  Aligned_cols=45  Identities=29%  Similarity=0.595  Sum_probs=40.5

Q ss_pred             ceeeccC---CCCeEEeeCCCCCcccccccccCCCCccCCCC-Cccccccch
Q 041295           42 PCIKCNR---RDESLLVCIQSGCPISVHENCLSCGVKSDDVG-NIYCPYFWY   89 (209)
Q Consensus        42 ~CikC~k---dGq~LL~Cs~~gCPlAvH~kClg~sl~~dd~G-nfYCPyC~y   89 (209)
                      .|.+|+.   +|+ ||.|+  +|+.+||..|+++++...|.| +||||.|.-
T Consensus        20 ~C~~C~~~~~~~~-ll~CD--~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~   68 (70)
T 3asl_A           20 ACHLCGGRQDPDK-QLMCD--ECDMAFHIYCLDPPLSSVPSEDEWYCPECRN   68 (70)
T ss_dssp             SBTTTCCCSCGGG-EEECT--TTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred             CCcCCCCcCCCCC-EEEcC--CCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence            7888995   455 99999  999999999999999999999 999999973

>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*

Probab=98.80  E-value=1.4e-09  Score=76.82  Aligned_cols=61  Identities=18%  Similarity=0.177  Sum_probs=47.4

Q ss_pred             CCCCCcccCCCCCCCceeeccCC--CCeEEeeCCCCCcccccccccCCCCccCCCCCccccccchh
Q 041295           27 GRSRDFMDVDLLEEEPCIKCNRR--DESLLVCIQSGCPISVHENCLSCGVKSDDVGNIYCPYFWYK   90 (209)
Q Consensus        27 ~~S~Ds~~~d~~neD~CikC~kd--Gq~LL~Cs~~gCPlAvH~kClg~sl~~dd~GnfYCPyC~yk   90 (209)
                      .|++. ...+..+...|.+|+..  |..+|.|+  +|+..||..|++.++.-.+.+.||||.|..+
T Consensus         6 ~P~~~-~~~~~~~~~~C~~C~~~~~~~~mi~CD--~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~   68 (75)
T 2k16_A            6 MAYVI-RDEWGNQIWICPGCNKPDDGSPMIGCD--DCDDWYHWPCVGIMAAPPEEMQWFCPKCANK   68 (75)
T ss_dssp             SSSEE-ECSSSCEEECBTTTTBCCSSCCEEECS--SSSSEEEHHHHTCSSCCCSSSCCCCTTTHHH
T ss_pred             CCCcc-ccccCCCCcCCCCCCCCCCCCCEEEcC--CCCcccccccCCCCccCCCCCCEEChhccCc
Confidence            34433 34445567789999986  42399999  9999999999998777777799999999754

>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A

Probab=98.80  E-value=5e-09  Score=75.21  Aligned_cols=59  Identities=27%  Similarity=0.529  Sum_probs=47.1

Q ss_pred             CCCcccCCCCCCCceeeccC--CCCeEEeeCCCCCcc-cccccccCCCCccCCCCCccccccchhh
Q 041295           29 SRDFMDVDLLEEEPCIKCNR--RDESLLVCIQSGCPI-SVHENCLSCGVKSDDVGNIYCPYFWYKC   91 (209)
Q Consensus        29 S~Ds~~~d~~neD~CikC~k--dGq~LL~Cs~~gCPl-AvH~kClg~sl~~dd~GnfYCPyC~ykk   91 (209)
                      +.+-.+.++.+...| +|+.  .|. +|.|+.-.||+ .||..|++  ++-.+.|.||||.|..++
T Consensus         5 ~~~~~~~d~~~~~~C-~C~~~~~g~-MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~   66 (71)
T 1wen_A            5 SSGDMPVDPNEPTYC-LCHQVSYGE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES   66 (71)
T ss_dssp             CSSCCCCCTTSCCCS-TTCCCSCSS-EECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred             cccccccCCCCCCEE-ECCCCCCCC-EeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence            444466777788899 5999  788 99999444995 99999999  566778999999997643

>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*

Probab=98.79  E-value=2.2e-09  Score=81.84  Aligned_cols=47  Identities=32%  Similarity=0.663  Sum_probs=41.8

Q ss_pred             CceeeccC---CCCeEEeeCCCCCcccccccccCCCCccCCCCCccccccchh
Q 041295           41 EPCIKCNR---RDESLLVCIQSGCPISVHENCLSCGVKSDDVGNIYCPYFWYK   90 (209)
Q Consensus        41 D~CikC~k---dGq~LL~Cs~~gCPlAvH~kClg~sl~~dd~GnfYCPyC~yk   90 (209)
                      ..|.+|+.   +++ ||.|+  +|+.+||..|+++++...|.|+||||.|...
T Consensus        59 ~~C~~C~~~~~~~~-ll~Cd--~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~  108 (114)
T 2kwj_A           59 KSCILCGTSENDDQ-LLFCD--DCDRGYHMYCLNPPVAEPPEGSWSCHLCWEL  108 (114)
T ss_dssp             CCCTTTTCCTTTTT-EEECS--SSCCEEETTTSSSCCSSCCSSCCCCHHHHHH
T ss_pred             CccCcccccCCCCc-eEEcC--CCCccccccccCCCccCCCCCCeECccccch
Confidence            36888888   466 99999  9999999999999999999999999999643

>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}

Probab=98.78  E-value=2.9e-09  Score=79.83  Aligned_cols=47  Identities=23%  Similarity=0.510  Sum_probs=42.8

Q ss_pred             CCCceeeccCCCCeE---EeeCCCCCcccccccccCCCCccCCCCCccccccc
Q 041295           39 EEEPCIKCNRRDESL---LVCIQSGCPISVHENCLSCGVKSDDVGNIYCPYFW   88 (209)
Q Consensus        39 neD~CikC~kdGq~L---L~Cs~~gCPlAvH~kClg~sl~~dd~GnfYCPyC~   88 (209)
                      +++.|.+|+..|+ |   |.|+  +||.+||..|++.+..-.+.+.|+||.|.
T Consensus         6 ~~~~C~~C~~~g~-~~~ll~C~--~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~   55 (111)
T 2ysm_A            6 SGANCAVCDSPGD-LLDQFFCT--TCGQHYHGMCLDIAVTPLKRAGWQCPECK   55 (111)
T ss_dssp             CCSCBTTTCCCCC-TTTSEECS--SSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred             CCCCCcCCCCCCC-CcCCeECC--CCCCCcChHHhCCccccccccCccCCcCC
Confidence            8999999999998 6   9999  99999999999987665678999999996

>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}

Probab=98.77  E-value=3.7e-09  Score=77.28  Aligned_cols=45  Identities=29%  Similarity=0.642  Sum_probs=40.5

Q ss_pred             ceeeccCCCCe--EEeeCCCCCcccccccccCCCCccCCCCC-ccccccc
Q 041295           42 PCIKCNRRDES--LLVCIQSGCPISVHENCLSCGVKSDDVGN-IYCPYFW   88 (209)
Q Consensus        42 ~CikC~kdGq~--LL~Cs~~gCPlAvH~kClg~sl~~dd~Gn-fYCPyC~   88 (209)
                      .|.+|+..++.  ||+|+  +|+.+||..|+.+++...+.|+ ||||.|.
T Consensus        28 ~C~vC~~~~d~~~ll~CD--~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~   75 (77)
T 3shb_A           28 ACHLCGGRQDPDKQLMCD--ECDMAFHIYCLDPPLSSVPSEDEWYCPECR   75 (77)
T ss_dssp             SBTTTCCCSCGGGEEECT--TTCCEEETTTSSSCCSSCCSSSCCCCTTTC
T ss_pred             cCCccCCCCCCcceeEeC--CCCCccCcccCCCcccCCCCCCceECcCcc
Confidence            78888886432  99999  9999999999999999999999 9999996

>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A

Probab=98.76  E-value=3.5e-09  Score=80.30  Aligned_cols=45  Identities=20%  Similarity=0.459  Sum_probs=40.9

Q ss_pred             ceeeccCCC----CeEEeeCCCCCcccccccccCCCCccCCCCCccccccch
Q 041295           42 PCIKCNRRD----ESLLVCIQSGCPISVHENCLSCGVKSDDVGNIYCPYFWY   89 (209)
Q Consensus        42 ~CikC~kdG----q~LL~Cs~~gCPlAvH~kClg~sl~~dd~GnfYCPyC~y   89 (209)
                      .|.+|+..|    + ||.|+  +|+.+||..|+.+++...+.|+||||.|.-
T Consensus        63 ~C~vC~~~~~~~~~-ll~Cd--~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~  111 (112)
T 3v43_A           63 TCSSCRDQGKNADN-MLFCD--SCDRGFHMECCDPPLTRMPKGMWICQICRP  111 (112)
T ss_dssp             CBTTTCCCCCTTCC-CEECT--TTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred             ccccccCcCCCccc-eEEcC--CCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence            788998764    5 99999  999999999999999999999999999963

>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}

Probab=98.70  E-value=6.3e-09  Score=89.57  Aligned_cols=46  Identities=28%  Similarity=0.556  Sum_probs=38.9

Q ss_pred             CCceeeccC---CCCeEEeeCCCCCcccccccccCCCCccCCCC-Cccccccc
Q 041295           40 EEPCIKCNR---RDESLLVCIQSGCPISVHENCLSCGVKSDDVG-NIYCPYFW   88 (209)
Q Consensus        40 eD~CikC~k---dGq~LL~Cs~~gCPlAvH~kClg~sl~~dd~G-nfYCPyC~   88 (209)
                      +..|.+|+.   +|+ ||+|+  +|+.+||..|+.+++...|.| +||||.|.
T Consensus       174 ~c~C~vC~~~~~~~~-lL~CD--~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~  223 (226)
T 3ask_A          174 VCACHLCGGRQDPDK-QLMCD--ECDMAFHIYCLDPPLSSVPSEDEWYCPECR  223 (226)
T ss_dssp             TTSCSSSCCCCC--C-CEECS--SSCCEECSCC--CCCCSCCSSSCCCCGGGC
T ss_pred             CCCCcCCCCCCCCCC-eEEcC--CCCcceeCccCCCCcccCCCCCCCCCcCCc
Confidence            557999998   455 99999  999999999999999999999 99999996

>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}

Probab=98.66  E-value=7.2e-09  Score=77.67  Aligned_cols=48  Identities=27%  Similarity=0.460  Sum_probs=42.9

Q ss_pred             ceeeccCCCCe--EEeeCCCCCcccccccccCCCCccCCCCCccccccchhh
Q 041295           42 PCIKCNRRDES--LLVCIQSGCPISVHENCLSCGVKSDDVGNIYCPYFWYKC   91 (209)
Q Consensus        42 ~CikC~kdGq~--LL~Cs~~gCPlAvH~kClg~sl~~dd~GnfYCPyC~ykk   91 (209)
                      .|.+|++.++.  ||.|+  .|+.+||..|+.+++...|.|+||||.|...+
T Consensus        56 ~C~~C~~~~~~~~ll~Cd--~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c~  105 (111)
T 2ysm_A           56 VCQNCKQSGEDSKMLVCD--TCDKGYHTFCLQPVMKSVPTNGWKCKNCRICI  105 (111)
T ss_dssp             CCTTTCCCSCCTTEEECS--SSCCEEEGGGSSSCCSSCCSSCCCCHHHHCCS
T ss_pred             cccccCccCCCCCeeECC--CCCcHHhHHhcCCccccCCCCCcCCcCCcCcC
Confidence            78899987753  99999  99999999999999999999999999997654

>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*

Probab=98.66  E-value=5.4e-09  Score=72.58  Aligned_cols=51  Identities=25%  Similarity=0.606  Sum_probs=39.8

Q ss_pred             CCCCCCceeeccC--CCCeEEeeCCCCCcc-cccccccCCCCccCCCCCccccccchh
Q 041295           36 DLLEEEPCIKCNR--RDESLLVCIQSGCPI-SVHENCLSCGVKSDDVGNIYCPYFWYK   90 (209)
Q Consensus        36 d~~neD~CikC~k--dGq~LL~Cs~~gCPl-AvH~kClg~sl~~dd~GnfYCPyC~yk   90 (209)
                      ++.+...| +|++  .|+ ++.|+.-.||+ .||..|++  ++-.+.|.||||.|..+
T Consensus         5 d~~e~~yC-~C~~~~~g~-mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~~   58 (59)
T 3c6w_A            5 GSNEPTYC-LCHQVSYGE-MIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQE   58 (59)
T ss_dssp             ---CCEET-TTTEECCSE-EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHCC
T ss_pred             CCCCCcEE-ECCCCCCCC-eeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccCc
Confidence            44466778 7999  787 99999444995 99999999  56677899999999754

>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A

Probab=98.64  E-value=4.6e-09  Score=83.76  Aligned_cols=55  Identities=18%  Similarity=0.332  Sum_probs=45.4

Q ss_pred             ccCCCCCCCceeeccCCCCeEEeeCCCCCcccccccccCCCC------cc-CCCCCccccccchh
Q 041295           33 MDVDLLEEEPCIKCNRRDESLLVCIQSGCPISVHENCLSCGV------KS-DDVGNIYCPYFWYK   90 (209)
Q Consensus        33 ~~~d~~neD~CikC~kdGq~LL~Cs~~gCPlAvH~kClg~sl------~~-dd~GnfYCPyC~yk   90 (209)
                      .-.+..+++.|.+|+.+|+ ||+|+  .||++||.+|+.+.+      .. .+.+.|+|+.|.-+
T Consensus        50 ~~d~Dg~~~~C~vC~dGG~-LlcCd--~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~  111 (129)
T 3ql9_A           50 SRDSDGMDEQCRWCAEGGN-LICCD--FCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE  111 (129)
T ss_dssp             CBCTTSCBSSCTTTCCCSE-EEECS--SSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred             ccCCCCCCCcCeecCCCCe-eEecC--CCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence            3444668899999999999 99999  999999999998542      12 47999999999754

>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*

Probab=98.59  E-value=1.1e-08  Score=70.95  Aligned_cols=52  Identities=25%  Similarity=0.549  Sum_probs=39.1

Q ss_pred             CCCCCCCceeeccC--CCCeEEeeCCCCCc-ccccccccCCCCccCCCCCccccccchh
Q 041295           35 VDLLEEEPCIKCNR--RDESLLVCIQSGCP-ISVHENCLSCGVKSDDVGNIYCPYFWYK   90 (209)
Q Consensus        35 ~d~~neD~CikC~k--dGq~LL~Cs~~gCP-lAvH~kClg~sl~~dd~GnfYCPyC~yk   90 (209)
                      .++-+...| +|++  .|. +|.|++-.|| ..||..|++  ++-.+.|.||||.|..+
T Consensus         5 ~d~~e~~~C-~C~~~~~g~-mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~~   59 (60)
T 2vnf_A            5 VDPNEPTYC-LCHQVSYGE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE   59 (60)
T ss_dssp             ----CCEET-TTTEECCSE-EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC-
T ss_pred             cCCCCCCEE-ECCCcCCCC-EEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccCc
Confidence            344466778 6998  777 9999944499 589999999  56677899999999754

>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}

Probab=98.50  E-value=2.6e-08  Score=69.85  Aligned_cols=52  Identities=31%  Similarity=0.607  Sum_probs=39.8

Q ss_pred             CCCCCCCceeeccC--CCCeEEeeCCCCCc-ccccccccCCCCccCCCCCccccccchh
Q 041295           35 VDLLEEEPCIKCNR--RDESLLVCIQSGCP-ISVHENCLSCGVKSDDVGNIYCPYFWYK   90 (209)
Q Consensus        35 ~d~~neD~CikC~k--dGq~LL~Cs~~gCP-lAvH~kClg~sl~~dd~GnfYCPyC~yk   90 (209)
                      .++-+...| +|++  .|. ++.|+.-.|| ..||..|++  ++-.+.|.||||.|..+
T Consensus         6 ~d~~e~~yC-~C~~~~~g~-MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~~   60 (62)
T 2g6q_A            6 IDPNEPTYC-LCNQVSYGE-MIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRGD   60 (62)
T ss_dssp             ----CCEET-TTTEECCSE-EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHTC
T ss_pred             cCCCCCcEE-ECCCCCCCC-eeeeeCCCCCcccEecccCC--cCcCCCCCEECcCcccC
Confidence            344466778 7999  787 9999944499 799999999  45567899999999754

>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2

Probab=98.47  E-value=1e-07  Score=71.97  Aligned_cols=54  Identities=24%  Similarity=0.525  Sum_probs=42.8

Q ss_pred             cCCCCCCCceeeccC--CCCeEEeeCCCCCc-ccccccccCCCCccCCCCCccccccchhh
Q 041295           34 DVDLLEEEPCIKCNR--RDESLLVCIQSGCP-ISVHENCLSCGVKSDDVGNIYCPYFWYKC   91 (209)
Q Consensus        34 ~~d~~neD~CikC~k--dGq~LL~Cs~~gCP-lAvH~kClg~sl~~dd~GnfYCPyC~ykk   91 (209)
                      +.+.-+...| +|++  .|. +|.|+.-.|| -.||..|++  ++-.+.|.||||.|..++
T Consensus        30 ~~d~~e~~yC-iC~~~~~g~-MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~   86 (91)
T 1weu_A           30 PVDPNEPTYC-LCHQVSYGE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES   86 (91)
T ss_dssp             CCCSCCCBCS-TTCCBCCSC-CCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred             CcCCCCCcEE-ECCCCCCCC-EeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence            4455567778 8999  787 9999944499 489999999  555678999999997653

>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}

Probab=98.32  E-value=1.1e-06  Score=65.84  Aligned_cols=43  Identities=12%  Similarity=0.265  Sum_probs=33.7

Q ss_pred             eccCCCCeEEeeCCCCCcccccccccCCCCccCCCCCccccccchhh
Q 041295           45 KCNRRDESLLVCIQSGCPISVHENCLSCGVKSDDVGNIYCPYFWYKC   91 (209)
Q Consensus        45 kC~kdGq~LL~Cs~~gCPlAvH~kClg~sl~~dd~GnfYCPyC~ykk   91 (209)
                      ++..+|. ||.|+  .|+..||..|++.+..-.+ ..||||.|.-+.
T Consensus        35 ~~~~~~~-mi~Cd--~C~~w~H~~C~~~~~~~~p-~~w~C~~C~~~~   77 (98)
T 2lv9_A           35 FTHDDGY-MICCD--KCSVWQHIDCMGIDRQHIP-DTYLCERCQPRN   77 (98)
T ss_dssp             CCSCSSC-EEEBT--TTCBEEETTTTTCCTTSCC-SSBCCTTTSSSC
T ss_pred             CccCCCc-EEEcC--CCCCcCcCcCCCCCccCCC-CCEECCCCcCCC
Confidence            3334566 99999  9999999999998665444 589999997543

>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*

Probab=98.21  E-value=7e-07  Score=67.25  Aligned_cols=50  Identities=26%  Similarity=0.545  Sum_probs=38.6

Q ss_pred             CCCCCCCceeeccC--CCCeEEeeCCCCCc-ccccccccCCCCccCCCCCccccc-cc
Q 041295           35 VDLLEEEPCIKCNR--RDESLLVCIQSGCP-ISVHENCLSCGVKSDDVGNIYCPY-FW   88 (209)
Q Consensus        35 ~d~~neD~CikC~k--dGq~LL~Cs~~gCP-lAvH~kClg~sl~~dd~GnfYCPy-C~   88 (209)
                      .+.-+...| +|+.  .|+ +|.|+.-.|| -.||..|++  ++..+.|.||||. |.
T Consensus        21 ~~~~~~~yC-iC~~~~~g~-MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~   74 (90)
T 2jmi_A           21 NNNQEEVYC-FCRNVSYGP-MVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCK   74 (90)
T ss_dssp             ---CCSCCS-TTTCCCSSS-EECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHH
T ss_pred             CCCCCCcEE-EeCCCCCCC-EEEecCCCCccccCcCccCC--CCcCCCCCccCChhhc
Confidence            344466788 7997  677 9999955588 589999999  5556789999999 85

>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*

Probab=98.15  E-value=3.4e-07  Score=69.71  Aligned_cols=45  Identities=24%  Similarity=0.375  Sum_probs=36.8

Q ss_pred             CceeeccCCC----------CeEEeeCCCCCcccccccccCCCCc---cCCCCCccccccc
Q 041295           41 EPCIKCNRRD----------ESLLVCIQSGCPISVHENCLSCGVK---SDDVGNIYCPYFW   88 (209)
Q Consensus        41 D~CikC~kdG----------q~LL~Cs~~gCPlAvH~kClg~sl~---~dd~GnfYCPyC~   88 (209)
                      ++|..|..++          + ||.|+  +||.+||..|++.++.   ..+.+.|+||.|.
T Consensus         2 ~~C~~C~~~~~~n~k~g~~~~-Li~C~--~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~   59 (114)
T 2kwj_A            2 SYCDFCLGGSNMNKKSGRPEE-LVSCA--DCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK   59 (114)
T ss_dssp             CCCSSSCCBTTBCTTTCCCCC-CEECS--SSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred             CcCccCCCCccccccCCCCCC-CeEeC--CCCCccchhhCCChhhhhhccCCCccCccccC
Confidence            5788886644          5 99999  9999999999997643   3568899999994

>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A

Probab=97.94  E-value=1.2e-06  Score=66.33  Aligned_cols=47  Identities=23%  Similarity=0.350  Sum_probs=37.7

Q ss_pred             CCCceeeccCC---------CCeEEeeCCCCCcccccccccCCCCc---cCCCCCccccccc
Q 041295           39 EEEPCIKCNRR---------DESLLVCIQSGCPISVHENCLSCGVK---SDDVGNIYCPYFW   88 (209)
Q Consensus        39 neD~CikC~kd---------Gq~LL~Cs~~gCPlAvH~kClg~sl~---~dd~GnfYCPyC~   88 (209)
                      ..++|..|..+         |+ ||.|+  +|+.+||..|++.++.   ....++|+||.|.
T Consensus         4 p~~~C~~C~~~~~~~~~g~~~~-Ll~C~--~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~   62 (112)
T 3v43_A            4 PIPICSFCLGTKEQNREKKPEE-LISCA--DCGNSGHPSCLKFSPELTVRVKALRWQCIECK   62 (112)
T ss_dssp             CCSSBTTTCCCTTCCTTSCCCC-CEECT--TTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred             cCccccccCCchhhCcCCCchh-ceEhh--hcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence            46789999654         35 99999  9999999999985432   3468999999997

>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.86  E-value=7.3e-06  Score=58.55  Aligned_cols=49  Identities=29%  Similarity=0.592  Sum_probs=38.4

Q ss_pred             CCCCceeeccC--CCCeEEeeCCCCCc-ccccccccCCCCccCCCCCccccccchh
Q 041295           38 LEEEPCIKCNR--RDESLLVCIQSGCP-ISVHENCLSCGVKSDDVGNIYCPYFWYK   90 (209)
Q Consensus        38 ~neD~CikC~k--dGq~LL~Cs~~gCP-lAvH~kClg~sl~~dd~GnfYCPyC~yk   90 (209)
                      .+.-.|+ |+.  .|. ++.|+.-.|| .-||..|++.  +-.+.+.||||.|.-+
T Consensus         4 ~~~~yC~-C~~~~~g~-MI~CD~cdC~~~WfH~~Cvgl--~~~p~~~w~Cp~C~~~   55 (70)
T 1x4i_A            4 GSSGYCI-CNQVSYGE-MVGCDNQDCPIEWFHYGCVGL--TEAPKGKWYCPQCTAA   55 (70)
T ss_dssp             SCCCCST-TSCCCCSS-EECCSCTTCSCCCEEHHHHTC--SSCCSSCCCCHHHHHH
T ss_pred             CCCeEEE-cCCCCCCC-EeEeCCCCCCccCCccccccc--CcCCCCCEECCCCCcc
Confidence            3556786 886  666 9999955587 6899999994  4467899999999743

>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3

Probab=97.81  E-value=4.8e-06  Score=63.67  Aligned_cols=50  Identities=22%  Similarity=0.463  Sum_probs=41.3

Q ss_pred             CCCCCCceeecc--CCCCeEEeeCCCCCcccccccccCCC------------CccCCCCCccccccc
Q 041295           36 DLLEEEPCIKCN--RRDESLLVCIQSGCPISVHENCLSCG------------VKSDDVGNIYCPYFW   88 (209)
Q Consensus        36 d~~neD~CikC~--kdGq~LL~Cs~~gCPlAvH~kClg~s------------l~~dd~GnfYCPyC~   88 (209)
                      ...+++.|-+|.  ..+. |++|.  .|.+.||..||...            +.-....-|.||+|-
T Consensus        11 ~~~~D~~C~VC~~~t~~~-l~pCR--vC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Ce   74 (89)
T 1wil_A           11 PVVNDEMCDVCEVWTAES-LFPCR--VCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCD   74 (89)
T ss_dssp             CCCCSCCCTTTCCCCSSC-CSSCS--SSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTC
T ss_pred             CCCCCcccCccccccccc-eeccc--cccccccHhhcccccccccHHHHHHHHccCCCCCccccccc
Confidence            344899999999  5566 99999  99999999999863            444578899999994

>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*

Probab=97.74  E-value=5e-06  Score=65.74  Aligned_cols=51  Identities=16%  Similarity=0.295  Sum_probs=40.3

Q ss_pred             CCCCceeeccCC----CCeEEeeCCCCCcccccccccCCCCc-cCCCCCccccccchhhH
Q 041295           38 LEEEPCIKCNRR----DESLLVCIQSGCPISVHENCLSCGVK-SDDVGNIYCPYFWYKCE   92 (209)
Q Consensus        38 ~neD~CikC~kd----Gq~LL~Cs~~gCPlAvH~kClg~sl~-~dd~GnfYCPyC~ykka   92 (209)
                      .+...| +|+..    |. ++.|+  .|+.-||..|++.+.. .+..+.|+||.|.-+..
T Consensus         6 ~~~~~C-~C~~~~~~~~~-mi~Cd--~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~~   61 (174)
T 2ri7_A            6 DTKLYC-ICKTPEDESKF-YIGCD--RCQNWYHGRCVGILQSEAELIDEYVCPQCQSTED   61 (174)
T ss_dssp             -CCEET-TTTEECCTTSC-EEECT--TTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHHHH
T ss_pred             CCCcEe-eCCCCCCCCCC-EeECC--CCCchhChhhcCCchhhccCccCeecCCCcchhc
Confidence            366789 99984    34 89999  9999999999997543 34578999999987653

>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=97.71  E-value=2.5e-05  Score=56.06  Aligned_cols=57  Identities=18%  Similarity=0.356  Sum_probs=42.4

Q ss_pred             ccCCCCCCCceeeccCC---CCeEEeeCCCCCcccccccccCCCCcc-----CCCCCccccccchhh
Q 041295           33 MDVDLLEEEPCIKCNRR---DESLLVCIQSGCPISVHENCLSCGVKS-----DDVGNIYCPYFWYKC   91 (209)
Q Consensus        33 ~~~d~~neD~CikC~kd---Gq~LL~Cs~~gCPlAvH~kClg~sl~~-----dd~GnfYCPyC~ykk   91 (209)
                      .+.++-+.-.| +|+..   |. .+.|+...|+.=||..|++.+..-     .....||||.|..++
T Consensus         9 d~~~~~~~~~C-iC~~~~~~g~-MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~   73 (78)
T 1wew_A            9 DPFQPEIKVRC-VCGNSLETDS-MIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS   73 (78)
T ss_dssp             CSSSCCCCCCC-SSCCCCCCSC-EEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred             cccCCCCCEEe-ECCCcCCCCC-EEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence            34455567789 59985   44 788886689999999999965442     235799999997654

>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=97.61  E-value=2.4e-05  Score=53.53  Aligned_cols=53  Identities=21%  Similarity=0.422  Sum_probs=40.8

Q ss_pred             CCCCceeeccCC---CCeEEeeCCCCCcccccccccCCCCcc-CCCCCccccccchhhH
Q 041295           38 LEEEPCIKCNRR---DESLLVCIQSGCPISVHENCLSCGVKS-DDVGNIYCPYFWYKCE   92 (209)
Q Consensus        38 ~neD~CikC~kd---Gq~LL~Cs~~gCPlAvH~kClg~sl~~-dd~GnfYCPyC~ykka   92 (209)
                      -+...|.+|++.   +...+.|+  .|..=||..|++.+..- +....|+||.|.-+++
T Consensus         4 ~e~~~C~~C~~~~~~~~~mI~Cd--~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~~   60 (64)
T 1we9_A            4 GSSGQCGACGESYAADEFWICCD--LCEMWFHGKCVKITPARAEHIKQYKCPSCSNKSG   60 (64)
T ss_dssp             SSCCCCSSSCCCCCSSSCEEECS--SSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTTC
T ss_pred             CCCCCCCCCCCccCCCCCEEEcc--CCCCCCCccccCcChhHhcCCCcEECCCCcCcCC
Confidence            366789999974   22288999  99999999999975442 2358999999987654

>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=97.58  E-value=6.7e-05  Score=52.82  Aligned_cols=51  Identities=20%  Similarity=0.369  Sum_probs=38.8

Q ss_pred             CCCCCceeeccCC---CCeEEeeCCCCCcccccccccCCCCccCCCCCccccccchh
Q 041295           37 LLEEEPCIKCNRR---DESLLVCIQSGCPISVHENCLSCGVKSDDVGNIYCPYFWYK   90 (209)
Q Consensus        37 ~~neD~CikC~kd---Gq~LL~Cs~~gCPlAvH~kClg~sl~~dd~GnfYCPyC~yk   90 (209)
                      ..+.-.|+ |+..   |...+.|+  .|-.=||..|++....-.....||||.|.-+
T Consensus        13 ~~~~~~C~-C~~~~~~g~~mI~Cd--~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~   66 (72)
T 1wee_A           13 DNWKVDCK-CGTKDDDGERMLACD--GCGVWHHTRCIGINNADALPSKFLCFRCIEL   66 (72)
T ss_dssp             CSSEECCT-TCCCSCCSSCEEECS--SSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred             CCcceEee-CCCccCCCCcEEECC--CCCCccCCeeeccCccccCCCcEECCCccCC
Confidence            33556795 9974   43388899  8999999999997643344689999999754

>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}

Probab=97.47  E-value=9.2e-05  Score=51.81  Aligned_cols=52  Identities=21%  Similarity=0.491  Sum_probs=36.7

Q ss_pred             CCCceeeccC---CCCeEEeeCCCCCcccccccccCCCCccCC----CCCccccccchhhH
Q 041295           39 EEEPCIKCNR---RDESLLVCIQSGCPISVHENCLSCGVKSDD----VGNIYCPYFWYKCE   92 (209)
Q Consensus        39 neD~CikC~k---dGq~LL~Cs~~gCPlAvH~kClg~sl~~dd----~GnfYCPyC~ykka   92 (209)
                      +.-.| +|+.   +|. .+.|++..|..=||..|++.+.....    ...||||.|..+++
T Consensus         9 ~~v~C-~C~~~~~~g~-mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~~r~   67 (68)
T 2rsd_A            9 AKVRC-ICSSTMVNDS-MIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRLSRA   67 (68)
T ss_dssp             CEECC-TTCCCSCCSC-EEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHHHHT
T ss_pred             CCEEe-ECCCCcCCCC-EEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccCccc
Confidence            34457 4976   355 88898556999999999996433222    24799999986653

>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}

Probab=97.44  E-value=5.1e-05  Score=57.54  Aligned_cols=56  Identities=16%  Similarity=0.344  Sum_probs=41.5

Q ss_pred             CCceeeccCC----CCeEEeeCCCCCcccccccccCCCCcc------CCCCCccccccchhhHHHHHH
Q 041295           40 EEPCIKCNRR----DESLLVCIQSGCPISVHENCLSCGVKS------DDVGNIYCPYFWYKCELMRTK   97 (209)
Q Consensus        40 eD~CikC~kd----Gq~LL~Cs~~gCPlAvH~kClg~sl~~------dd~GnfYCPyC~ykka~eey~   97 (209)
                      ...|.+|++.    |. .+.|+ .+|..=||..|++.+..-      ++.+.|+||.|.-+.......
T Consensus         3 ~~~C~iC~~p~~~~~~-mi~Cd-d~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~~~~~~   68 (105)
T 2xb1_A            3 VYPCGACRSEVNDDQD-AILCE-ASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKEGSGSG   68 (105)
T ss_dssp             CCBCTTTCSBCCTTSC-EEECT-TTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTTTC---
T ss_pred             cCCCCCCCCccCCCCC-EEEec-CCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCCCCCCC
Confidence            3579999986    55 88887 499999999999965321      466999999999876554333

>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}

Probab=97.14  E-value=0.0003  Score=49.75  Aligned_cols=52  Identities=13%  Similarity=0.288  Sum_probs=39.5

Q ss_pred             CCCCCCCceeeccCC--CCeEEeeCCCCCcccccccccCCCCccCCCCCccccccchh
Q 041295           35 VDLLEEEPCIKCNRR--DESLLVCIQSGCPISVHENCLSCGVKSDDVGNIYCPYFWYK   90 (209)
Q Consensus        35 ~d~~neD~CikC~kd--Gq~LL~Cs~~gCPlAvH~kClg~sl~~dd~GnfYCPyC~yk   90 (209)
                      .+..+.-.| +|++.  |...+.|+  .|..=||..|++.+.. .....|+||.|.-+
T Consensus        14 ~~~~~~~~C-iC~~~~~~~~MIqCd--~C~~WfH~~Cvgi~~~-~~~~~~~C~~C~~s   67 (68)
T 3o70_A           14 LYFQGLVTC-FCMKPFAGRPMIECN--ECHTWIHLSCAKIRKS-NVPEVFVCQKCRDS   67 (68)
T ss_dssp             CTTTTCCCS-TTCCCCTTCCEEECT--TTCCEEETTTTTCCTT-SCCSSCCCHHHHTC
T ss_pred             CCCCCceEe-ECCCcCCCCCEEECC--CCCccccccccCcCcc-cCCCcEECCCCCCC
Confidence            334467788 89984  33388999  8999999999997654 34579999999643

>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2

Probab=97.06  E-value=0.00016  Score=51.11  Aligned_cols=49  Identities=16%  Similarity=0.411  Sum_probs=36.8

Q ss_pred             CCCceeeccCCCC--eEEeeCCCCCcccccccccCCCCccC-----CCCCccccccchh
Q 041295           39 EEEPCIKCNRRDE--SLLVCIQSGCPISVHENCLSCGVKSD-----DVGNIYCPYFWYK   90 (209)
Q Consensus        39 neD~CikC~kdGq--~LL~Cs~~gCPlAvH~kClg~sl~~d-----d~GnfYCPyC~yk   90 (209)
                      +.-.| +|++...  ..+.|+  .|..=||..|++.+..-.     ....||||.|..+
T Consensus        15 ~~~~C-~C~~~~~~~~MI~Cd--~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~   70 (76)
T 1wem_A           15 NALYC-ICRQPHNNRFMICCD--RCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL   70 (76)
T ss_dssp             TCCCS-TTCCCCCSSCEEECS--SSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred             CCCEE-ECCCccCCCCEEEeC--CCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence            35678 6998532  288899  899999999999754321     3579999999754

>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}

Probab=96.71  E-value=0.00096  Score=44.40  Aligned_cols=46  Identities=15%  Similarity=0.406  Sum_probs=34.4

Q ss_pred             CCCceeeccCC--CCeEEeeCCCCCcccccccccCCCCccCCCCCccccccc
Q 041295           39 EEEPCIKCNRR--DESLLVCIQSGCPISVHENCLSCGVKSDDVGNIYCPYFW   88 (209)
Q Consensus        39 neD~CikC~kd--Gq~LL~Cs~~gCPlAvH~kClg~sl~~dd~GnfYCPyC~   88 (209)
                      +.-.|+ |+..  |...+.|+  .|..=||..|++.+.. .....|+||.|.
T Consensus         3 d~~~C~-C~~~~~~~~MI~Cd--~C~~W~H~~Cvgi~~~-~~~~~~~C~~C~   50 (52)
T 3o7a_A            3 DLVTCF-CMKPFAGRPMIECN--ECHTWIHLSCAKIRKS-NVPEVFVCQKCR   50 (52)
T ss_dssp             TCBCST-TCCBCTTCCEEECT--TTCCEEETTTTTCCGG-GCCSSCCCHHHH
T ss_pred             cCeEEE-eCCcCCCCCEEEcC--CCCccccccccCCCcc-cCCCcEECcCCC
Confidence            344553 7763  32388999  8999999999997654 335799999995

>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2

Probab=96.28  E-value=0.0015  Score=46.60  Aligned_cols=50  Identities=18%  Similarity=0.293  Sum_probs=37.0

Q ss_pred             CCCceeeccCCC---CeEEeeCCCCCcccccccccCCCCcc-CCCCCccccccchhh
Q 041295           39 EEEPCIKCNRRD---ESLLVCIQSGCPISVHENCLSCGVKS-DDVGNIYCPYFWYKC   91 (209)
Q Consensus        39 neD~CikC~kdG---q~LL~Cs~~gCPlAvH~kClg~sl~~-dd~GnfYCPyC~ykk   91 (209)
                      +.-.| +|+...   ...+.|+  .|..=||..|++....- +....|+||.|.-+.
T Consensus        11 ~~~~C-~C~~~~d~~~~MIqCd--~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~   64 (79)
T 1wep_A           11 VPVYC-LCRQPYNVNHFMIECG--LCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF   64 (79)
T ss_dssp             CCCCS-TTSCSCCSSSCEEEBT--TTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred             CccEE-EcCCccCCCCceEEcC--CCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence            44566 788842   2288999  89999999999975432 235799999998543

>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*

Probab=96.27  E-value=0.00062  Score=47.94  Aligned_cols=49  Identities=18%  Similarity=0.395  Sum_probs=37.3

Q ss_pred             CCCceeeccCC---CCeEEeeCCCCCcccccccccCCCCcc------CCCCCccccccc
Q 041295           39 EEEPCIKCNRR---DESLLVCIQSGCPISVHENCLSCGVKS------DDVGNIYCPYFW   88 (209)
Q Consensus        39 neD~CikC~kd---Gq~LL~Cs~~gCPlAvH~kClg~sl~~------dd~GnfYCPyC~   88 (209)
                      ...+|.+|++.   +...+.|++ +|..=||..|++.+..-      ++.+.|+||.|.
T Consensus         7 ~~~~C~~C~~p~~~~~~mI~CD~-~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~   64 (65)
T 2vpb_A            7 PVYPCGICTNEVNDDQDAILCEA-SCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM   64 (65)
T ss_dssp             --CBCTTTCSBCCTTSCEEEBTT-TTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred             CcCcCccCCCccCCCCCeEeccc-CccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence            56789999984   333778884 99999999999975431      477899999995

>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*

Probab=95.96  E-value=0.0016  Score=43.41  Aligned_cols=46  Identities=17%  Similarity=0.389  Sum_probs=33.2

Q ss_pred             ceeeccCC---CCeEEeeCCCCCcccccccccCCCCccCCCCCccccccc
Q 041295           42 PCIKCNRR---DESLLVCIQSGCPISVHENCLSCGVKSDDVGNIYCPYFW   88 (209)
Q Consensus        42 ~CikC~kd---Gq~LL~Cs~~gCPlAvH~kClg~sl~~dd~GnfYCPyC~   88 (209)
                      .|-+|++.   +...+.|++ .|..=||..|++.+..-.+.+.|+||.|.
T Consensus         4 ~cc~C~~p~~~~~~mI~Cd~-~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~   52 (52)
T 2kgg_A            4 AAQNCQRPCKDKVDWVQCDG-GCDEWFHQVCVGVSPEMAENEDYICINCA   52 (52)
T ss_dssp             SCTTCCCCCCTTCCEEECTT-TTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred             cCCCCcCccCCCCcEEEeCC-CCCccCcccccCCCccccCCCCEECCCCC
Confidence            35567663   332778886 79999999999975443334899999984

>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A

Probab=95.43  E-value=0.0069  Score=50.11  Aligned_cols=52  Identities=17%  Similarity=0.319  Sum_probs=37.5

Q ss_pred             CceeeccCC---CC---eEEeeCCCCCcccccccccCCCCc-------cCCCCCccccccchhhHHH
Q 041295           41 EPCIKCNRR---DE---SLLVCIQSGCPISVHENCLSCGVK-------SDDVGNIYCPYFWYKCELM   94 (209)
Q Consensus        41 D~CikC~kd---Gq---~LL~Cs~~gCPlAvH~kClg~sl~-------~dd~GnfYCPyC~ykka~e   94 (209)
                      +.|.+|++.   ++   ..+.|+  .|..=||.+|++.+..       ..+...|+||.|.-+....
T Consensus         3 ~~CpiC~k~Y~~~~~~~~MIqCd--~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~~~   67 (183)
T 3lqh_A            3 NFCPLCDKCYDDDDYESKMMQCG--KCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHPAE   67 (183)
T ss_dssp             CBCTTTCCBCTTCCTTCCEEECT--TTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSSCH
T ss_pred             CcCCCCcCccCCcccCCCeEECC--CCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCCHH
Confidence            568888872   22   288999  9999999999996431       1123489999999775543

>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2

Probab=94.48  E-value=0.0083  Score=42.41  Aligned_cols=44  Identities=18%  Similarity=0.366  Sum_probs=33.0

Q ss_pred             eeccCC----CCeEEeeCCCCCcccccccccCCCCcc-CCCCCccccccchh
Q 041295           44 IKCNRR----DESLLVCIQSGCPISVHENCLSCGVKS-DDVGNIYCPYFWYK   90 (209)
Q Consensus        44 ikC~kd----Gq~LL~Cs~~gCPlAvH~kClg~sl~~-dd~GnfYCPyC~yk   90 (209)
                      -+|+..    +. .+.|+  .|..=||..|++.+..- .....|+||.|.-+
T Consensus        13 CiC~~~~~~~~~-MI~Cd--~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~   61 (75)
T 3kqi_A           13 CVCRLPYDVTRF-MIECD--ACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT   61 (75)
T ss_dssp             TTTTEECCTTSC-EEECT--TTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred             EECCCcCCCCCC-EEEcC--CCCCCEecccccccccccCCCCEEECCCCccc
Confidence            368873    34 88999  89999999999965432 22368999999754

>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*

Probab=94.40  E-value=0.02  Score=54.55  Aligned_cols=36  Identities=17%  Similarity=0.229  Sum_probs=29.0

Q ss_pred             EEeeCCCCCcccccccccCCCCcc-CCCCCccccccchh
Q 041295           53 LLVCIQSGCPISVHENCLSCGVKS-DDVGNIYCPYFWYK   90 (209)
Q Consensus        53 LL~Cs~~gCPlAvH~kClg~sl~~-dd~GnfYCPyC~yk   90 (209)
                      .+.|+  .|.-=||..|++.+..- +..+.||||.|.-.
T Consensus        58 mI~CD--~C~~WfH~~CVgi~~~~a~~~~~y~Cp~C~~~   94 (528)
T 3pur_A           58 WIGCD--SCQTWYHFLCSGLEQFEYYLYEKFFCPKCVPH   94 (528)
T ss_dssp             EEECT--TTCCEEEGGGTTCCGGGTTTEEECCCTTTHHH
T ss_pred             EEECC--CCCcCCCCcCCCCChhHhcCCCeEECcCCcCC
Confidence            56788  99999999999976543 34589999999854

>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}

Probab=94.34  E-value=0.012  Score=43.66  Aligned_cols=35  Identities=26%  Similarity=0.466  Sum_probs=27.5

Q ss_pred             EEeeCCCCCcccccccccCCCCc----cCCCCCccccccch
Q 041295           53 LLVCIQSGCPISVHENCLSCGVK----SDDVGNIYCPYFWY   89 (209)
Q Consensus        53 LL~Cs~~gCPlAvH~kClg~sl~----~dd~GnfYCPyC~y   89 (209)
                      ||.|+  .|...||..|++....    -+....|+||.|.-
T Consensus        75 m~~C~--~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~  113 (117)
T 4bbq_A           75 LMECC--ICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQ  113 (117)
T ss_dssp             CEEET--TTCCEECGGGCCSCCCCEECSSSSSEEECTTTC-
T ss_pred             eEEee--ecCCeEECCCCCCCccccccccCCCCeECCCCcC
Confidence            88999  9999999999996533    23345699999973

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.69  E-value=0.016  Score=41.53  Aligned_cols=53  Identities=21%  Similarity=0.390  Sum_probs=36.0

Q ss_pred             CCCCceeeccCCC---Ce-EEeeCCCCCcccccccccCCCCccCCCCCccccccchhhH
Q 041295           38 LEEEPCIKCNRRD---ES-LLVCIQSGCPISVHENCLSCGVKSDDVGNIYCPYFWYKCE   92 (209)
Q Consensus        38 ~neD~CikC~kdG---q~-LL~Cs~~gCPlAvH~kClg~sl~~dd~GnfYCPyC~ykka   92 (209)
                      .+++.|.+|-.+.   +. +++|.=.|.--.||..|+..=+.  -.++..||+|.+...
T Consensus        13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~--~~~~~~CplCr~~~~   69 (80)
T 2d8s_A           13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIK--SSDTRCCELCKYEFI   69 (80)
T ss_dssp             TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHH--HHCCSBCSSSCCBCC
T ss_pred             CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHh--hCCCCCCCCCCCeee
Confidence            4678999998643   22 45565334458999999974332  245689999987654

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=93.50  E-value=0.0043  Score=42.49  Aligned_cols=51  Identities=24%  Similarity=0.288  Sum_probs=36.5

Q ss_pred             CCCceeeccCCCCe--EEeeCCCCCcccccccccCCCCccCCCCCccccccchhh
Q 041295           39 EEEPCIKCNRRDES--LLVCIQSGCPISVHENCLSCGVKSDDVGNIYCPYFWYKC   91 (209)
Q Consensus        39 neD~CikC~kdGq~--LL~Cs~~gCPlAvH~kClg~sl~~dd~GnfYCPyC~ykk   91 (209)
                      +.+.|.+|-.++..  +++|.=.|.-..||..|+..  =+..+++..||.|-+..
T Consensus         5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~--W~~~~~~~~C~~C~~~~   57 (60)
T 1vyx_A            5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLST--WLTISRNTACQICGVVY   57 (60)
T ss_dssp             SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHH--HHHHHTCSBCTTTCCBC
T ss_pred             CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHH--HHHhCCCCccCCCCCee
Confidence            67889999764333  67765335566999999984  33345789999998764

>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*

Probab=93.48  E-value=0.043  Score=42.12  Aligned_cols=42  Identities=17%  Similarity=0.337  Sum_probs=36.4

Q ss_pred             CCCceeeccCCCCeEEeeCCCCCcccccccccCCCCccCCCCCccc
Q 041295           39 EEEPCIKCNRRDESLLVCIQSGCPISVHENCLSCGVKSDDVGNIYC   84 (209)
Q Consensus        39 neD~CikC~kdGq~LL~Cs~~gCPlAvH~kClg~sl~~dd~GnfYC   84 (209)
                      ..-.|..|++...  +.|.  .||.|||..|+...+...+...|+|
T Consensus        57 p~c~C~~C~k~~~--~~C~--~Cp~sfC~~c~~g~l~~~~~~~~~c   98 (107)
T 4gne_A           57 PWHQCDECSSAAV--SFCE--FCPHSFCKDHEKGALVPSALEGRLC   98 (107)
T ss_dssp             GGGBCTTTCSBCC--EECS--SSSCEECTTTCTTSCEECTTTTCEE
T ss_pred             CCCCCCcCCCCCC--cCcC--CCCcchhhhccCCcceecCCCCcee
Confidence            3456889998877  6899  9999999999999998888888987

>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*

Probab=92.06  E-value=0.031  Score=52.06  Aligned_cols=48  Identities=19%  Similarity=0.345  Sum_probs=35.9

Q ss_pred             CCCceeeccCC----CCeEEeeCCCCCcccccccccCCCCcc-CCCCCccccccchh
Q 041295           39 EEEPCIKCNRR----DESLLVCIQSGCPISVHENCLSCGVKS-DDVGNIYCPYFWYK   90 (209)
Q Consensus        39 neD~CikC~kd----Gq~LL~Cs~~gCPlAvH~kClg~sl~~-dd~GnfYCPyC~yk   90 (209)
                      +.-.| +|+..    |. .+.|+  .|.-=||..|++.+..- +..+.||||.|.-+
T Consensus        36 ~~~yC-~C~~~~d~~~~-MIqCd--~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~   88 (488)
T 3kv5_D           36 PPVYC-VCRQPYDVNRF-MIECD--ICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL   88 (488)
T ss_dssp             CCEET-TTTEECCTTSC-EEEBT--TTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred             CCeEE-eCCCcCCCCCC-eEEcc--CCCCceeeeecCcCcccccCCCEEECCCCcCC
Confidence            34456 89873    34 88899  89999999999965443 22478999999854

>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*

Probab=91.95  E-value=0.035  Score=45.80  Aligned_cols=53  Identities=19%  Similarity=0.258  Sum_probs=42.5

Q ss_pred             CCCCCceeeccCCCCeEEeeCCCCCcccccccccCC--CC----ccCCCCCccccccchh
Q 041295           37 LLEEEPCIKCNRRDESLLVCIQSGCPISVHENCLSC--GV----KSDDVGNIYCPYFWYK   90 (209)
Q Consensus        37 ~~neD~CikC~kdGq~LL~Cs~~gCPlAvH~kClg~--sl----~~dd~GnfYCPyC~yk   90 (209)
                      ..-+..|..|+.+|+ ||.|+...||.+|=.+|+..  ++    .......|.|=.|.-+
T Consensus        76 DG~~~yC~wC~~Gg~-l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~  134 (159)
T 3a1b_A           76 DGYQSYCTICCGGRE-VLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHK  134 (159)
T ss_dssp             TSSBSSCTTTSCCSE-EEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSS
T ss_pred             CCCcceeeEecCCCe-EEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCCc
Confidence            345789999999998 99999889999999999863  11    2245789999888643

>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*

Probab=89.73  E-value=0.063  Score=49.38  Aligned_cols=53  Identities=21%  Similarity=0.326  Sum_probs=43.3

Q ss_pred             CCCCCceeeccCCCCeEEeeCCCCCcccccccccCCCC------ccCCCCCccccccchh
Q 041295           37 LLEEEPCIKCNRRDESLLVCIQSGCPISVHENCLSCGV------KSDDVGNIYCPYFWYK   90 (209)
Q Consensus        37 ~~neD~CikC~kdGq~LL~Cs~~gCPlAvH~kClg~sl------~~dd~GnfYCPyC~yk   90 (209)
                      ..-+..|..|+.+|+ |++|+...|+.+|=.+|+..-+      .......|.|=.|.-+
T Consensus        90 DG~~~yCr~C~~Gg~-l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~  148 (386)
T 2pv0_B           90 DGYQSYCSICCSGET-LLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS  148 (386)
T ss_dssp             SSSBCSCTTTCCCSS-CEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred             CCCcccceEcCCCCe-EEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence            345789999999999 9999999999999999987422      2244689999999755

>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}

Probab=87.94  E-value=0.066  Score=49.63  Aligned_cols=45  Identities=18%  Similarity=0.316  Sum_probs=34.0

Q ss_pred             eeccC----CCCeEEeeCCCCCcccccccccCCCCccC-CCCCccccccchhh
Q 041295           44 IKCNR----RDESLLVCIQSGCPISVHENCLSCGVKSD-DVGNIYCPYFWYKC   91 (209)
Q Consensus        44 ikC~k----dGq~LL~Cs~~gCPlAvH~kClg~sl~~d-d~GnfYCPyC~ykk   91 (209)
                      -+|+.    +|. .+.|+  .|.-=||..|++.+..-. +.+.|+||.|.-+.
T Consensus         8 CiC~~~~d~~~~-MIqCD--~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~   57 (447)
T 3kv4_A            8 CLCRLPYDVTRF-MIECD--MCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLH   57 (447)
T ss_dssp             TTTTEECCTTSC-EEECT--TTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHH
T ss_pred             EeCCCcCCCCCC-eEEcC--CCCcccccccCCcCcccccCCCEEECCCCcccc
Confidence            36776    245 88888  999999999999654432 33789999998653

>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}

Probab=83.51  E-value=0.38  Score=35.26  Aligned_cols=31  Identities=19%  Similarity=0.639  Sum_probs=26.7

Q ss_pred             CCceeeccCC--CCeEEeeCCCCCcccccccccC
Q 041295           40 EEPCIKCNRR--DESLLVCIQSGCPISVHENCLS   71 (209)
Q Consensus        40 eD~CikC~kd--Gq~LL~Cs~~gCPlAvH~kClg   71 (209)
                      .-.|.+|+..  |- -+.|+...|..+||..|.-
T Consensus        17 ~l~C~iC~~~~~GA-ciqC~~~~C~~~fHv~CA~   49 (87)
T 2lq6_A           17 KLTCYLCKQKGVGA-SIQCHKANCYTAFHVTCAQ   49 (87)
T ss_dssp             CCCBTTTTBCCSSC-EEECSCTTTCCEEEHHHHH
T ss_pred             cCCCcCCCCCCCcE-eEecCCCCCCCcCcHHHHH
Confidence            4579999864  77 8999989999999999975

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	209
d1mm2a_	61	Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606	99.21
d1fp0a1	70	Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo	99.08
d1f62a_	51	Williams-Beuren syndrome transcription factor, WST	98.83
d1weva_	88	PHD finger protein 22 {Mouse (Mus musculus) [TaxId	98.66
d1wesa_	71	PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu	98.52
d2pnxa1	51	Inhibitor of growth protein 4, Ing4 {Homo sapiens	98.16
d1we9a_	64	PHD finger protein At5g26210 {Thale cress (Arabido	97.98
d1wema_	76	Death associated transcription factor 1, Datf1 (DI	97.8
d1weea_	72	PHD finger protein At1g33420 {Thale cress (Arabido	97.79
d1wewa_	78	Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop	97.69
d1wepa_	79	PHD finger protein 8 {Mouse (Mus musculus) [TaxId:	97.15
d1wila_	89	Hypothetical protein KIAA1045 {Human (Homo sapiens	93.51
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	93.04
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	83.56

>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Mi2-beta (CHD4)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=3.5e-12  Score=86.46  Aligned_cols=51  Identities=31%  Similarity=0.526  Sum_probs=46.4

Q ss_pred             CCCCceeeccCCCCeEEeeCCCCCcccccccccCCCCccCCCCCccccccchhh
Q 041295           38 LEEEPCIKCNRRDESLLVCIQSGCPISVHENCLSCGVKSDDVGNIYCPYFWYKC   91 (209)
Q Consensus        38 ~neD~CikC~kdGq~LL~Cs~~gCPlAvH~kClg~sl~~dd~GnfYCPyC~ykk   91 (209)
                      .++++|.+|+.+|+ ||.|+  +|+.+||..|+...+...+.+.||||.|.-+.
T Consensus         7 ~~~~~C~~C~~~g~-lv~Cd--~C~~~~H~~C~~~~~~~~~~~~W~C~~C~~~~   57 (61)
T d1mm2a_           7 HHMEFCRVCKDGGE-LLCCD--TCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA   57 (61)
T ss_dssp             SSCSSCTTTCCCSS-CBCCS--SSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred             CCcCCCcCCCCCCe-EEEeC--CCCccCchhhcCCCcCcCCCCcEECCCCcCcc
Confidence            47889999999999 99999  99999999999988888889999999997543

>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Nuclear corepressor KAP-1 (TIF-1beta)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=3.3e-11  Score=83.64  Aligned_cols=49  Identities=16%  Similarity=0.407  Sum_probs=44.1

Q ss_pred             CCCceeeccCCCCeEEeeCCCCCcccccccccCCCCccCCCCCccccccchh
Q 041295           39 EEEPCIKCNRRDESLLVCIQSGCPISVHENCLSCGVKSDDVGNIYCPYFWYK   90 (209)
Q Consensus        39 neD~CikC~kdGq~LL~Cs~~gCPlAvH~kClg~sl~~dd~GnfYCPyC~yk   90 (209)
                      ...+|.+|+.+|+ ||.|+  +|+.+||..|+++++...+.++|+||.|...
T Consensus         6 ~c~~C~~C~~~~~-ll~Cd--~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~   54 (70)
T d1fp0a1           6 SATICRVCQKPGD-LVMCN--QCEFCFHLDCHLPALQDVPGEEWSCSLCHVL   54 (70)
T ss_dssp             SSSCCSSSCSSSC-CEECT--TSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred             CCCCCCCCCCcCE-EEECC--CCChhhccccCCCCcCcCCCCCEECcCCcCc
Confidence            3567889999999 99999  9999999999999888889999999999643

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=4.6e-10  Score=72.93  Aligned_cols=45  Identities=27%  Similarity=0.571  Sum_probs=38.9

Q ss_pred             ceeeccCCCCe--EEeeCCCCCcccccccccCCCCccCCCCCccccccc
Q 041295           42 PCIKCNRRDES--LLVCIQSGCPISVHENCLSCGVKSDDVGNIYCPYFW   88 (209)
Q Consensus        42 ~CikC~kdGq~--LL~Cs~~gCPlAvH~kClg~sl~~dd~GnfYCPyC~   88 (209)
                      .|.+|++.++.  ||.|+  +|+..||.+|+.+++...+.+.||||.|.
T Consensus         2 ~C~vC~~~~~~~~~i~Cd--~C~~~~H~~C~~p~~~~~p~~~W~C~~C~   48 (51)
T d1f62a_           2 RCKVCRKKGEDDKLILCD--ECNKAFHLFCLRPALYEVPDGEWQCPACQ   48 (51)
T ss_dssp             CCTTTCCSSCCSCCEECT--TTCCEECHHHHCTTCCSCCSSCCSCTTTS
T ss_pred             CCcCcCCCCCCCCEEEcC--CCCCCCCCCCCCCCCCcCCCCCEECcCCc
Confidence            47777765533  99999  99999999999998888899999999995

>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 22
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.66  E-value=3.6e-09  Score=74.85  Aligned_cols=47  Identities=23%  Similarity=0.479  Sum_probs=38.5

Q ss_pred             CCceeeccCC-----CCeEEeeCCCCCcccccccccCCCCc----cCCCCCccccccch
Q 041295           40 EEPCIKCNRR-----DESLLVCIQSGCPISVHENCLSCGVK----SDDVGNIYCPYFWY   89 (209)
Q Consensus        40 eD~CikC~kd-----Gq~LL~Cs~~gCPlAvH~kClg~sl~----~dd~GnfYCPyC~y   89 (209)
                      ...|.+|+..     +. ||.|+  +|...||..|+++++.    .++.+.||||.|.-
T Consensus        16 ~~~C~iC~~~~~~~~~~-~v~Cd--~C~~~~H~~C~~p~~~~~~~~~~~~~W~C~~C~~   71 (88)
T d1weva_          16 GLACVVCRQMTVASGNQ-LVECQ--ECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTR   71 (88)
T ss_dssp             CCSCSSSCCCCCCTTCC-EEECS--SSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHH
T ss_pred             cCCccCCCCccCCCCCe-EEEcC--CCCCccccccCCCcccccccccCCCeEECcccCc
Confidence            4569999863     34 99999  9999999999997654    46788999999963

>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD Inhibitor of growth protein 2, Ing2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.52  E-value=5.6e-08  Score=68.12  Aligned_cols=52  Identities=33%  Similarity=0.645  Sum_probs=40.3

Q ss_pred             cCCCCCCCceeeccC--CCCeEEeeCCCCCcc-cccccccCCCCccCCCCCccccccch
Q 041295           34 DVDLLEEEPCIKCNR--RDESLLVCIQSGCPI-SVHENCLSCGVKSDDVGNIYCPYFWY   89 (209)
Q Consensus        34 ~~d~~neD~CikC~k--dGq~LL~Cs~~gCPl-AvH~kClg~sl~~dd~GnfYCPyC~y   89 (209)
                      ++++-+...| +|+.  +|+ +|.|+...|+. -||..|++  ++..|.++||||.|.-
T Consensus        10 ~~d~~e~~~C-iC~~~~~~~-~i~c~~~~C~~~wfH~~Cvg--l~~~p~~~w~C~~C~~   64 (71)
T d1wesa_          10 AIDPNEPTYC-LCNQVSYGE-MIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG   64 (71)
T ss_dssp             CCCSSSCCCS-TTCCCCCSS-EECCSCTTCSCCCEETTTTT--CSSCCSSCCCCTTTSS
T ss_pred             CcCCCCCCEE-EeCCCCCCC-EEEEECCCCCCcCccCccCC--CCcCCCCcEECcCCcc
Confidence            4555566678 6986  455 77776568996 59999998  6788999999999963

>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Inhibitor of growth protein 4, Ing4
species: Homo sapiens [TaxId: 9606]

Probab=98.16  E-value=2.9e-07  Score=60.45  Aligned_cols=43  Identities=26%  Similarity=0.701  Sum_probs=34.5

Q ss_pred             ceeeccC--CCCeEEeeCCCCCccc-ccccccCCCCccCCCCCccccccc
Q 041295           42 PCIKCNR--RDESLLVCIQSGCPIS-VHENCLSCGVKSDDVGNIYCPYFW   88 (209)
Q Consensus        42 ~CikC~k--dGq~LL~Cs~~gCPlA-vH~kClg~sl~~dd~GnfYCPyC~   88 (209)
                      .| +|+.  +|+ +|.|+...|+.. ||.+|++  ++..+.++||||.|.
T Consensus         4 yC-~C~~~~~~~-mi~Cd~~~C~~~WfH~~Cvg--l~~~p~~~w~C~~C~   49 (51)
T d2pnxa1           4 YC-LCHQVSYGE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCS   49 (51)
T ss_dssp             ET-TTTEECCSE-EEECSCTTCSSCEEEGGGGT--CSSCCSSCCCCHHHH
T ss_pred             EE-EcCCCCCCC-EEEEecCCCCCCCEeCCccC--CCcCCCCcEECcCCC
Confidence            56 4765  445 999997789875 9999999  556778999999996

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.98  E-value=1.7e-06  Score=57.77  Aligned_cols=50  Identities=22%  Similarity=0.461  Sum_probs=39.3

Q ss_pred             CCCceeeccCC---CCeEEeeCCCCCcccccccccCCCCccC-CCCCccccccchh
Q 041295           39 EEEPCIKCNRR---DESLLVCIQSGCPISVHENCLSCGVKSD-DVGNIYCPYFWYK   90 (209)
Q Consensus        39 neD~CikC~kd---Gq~LL~Cs~~gCPlAvH~kClg~sl~~d-d~GnfYCPyC~yk   90 (209)
                      .+..|.+|+..   +..+|.|+  +|...||..|++...... +...|+||.|.-+
T Consensus         5 ~~~~C~~C~~~~~~~~~~I~Cd--~C~~w~H~~C~~~~~~~~~~~~~w~C~~C~~~   58 (64)
T d1we9a_           5 SSGQCGACGESYAADEFWICCD--LCEMWFHGKCVKITPARAEHIKQYKCPSCSNK   58 (64)
T ss_dssp             SCCCCSSSCCCCCSSSCEEECS--SSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred             CCCcCcCcCCCCCCCCCEEEcC--CCCccCCcccCCcChHHCCCCCeEECcCCcCc
Confidence            56689999873   33278899  999999999999765543 4579999999854

>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Death associated transcription factor 1, Datf1 (DIO-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.80  E-value=2.7e-06  Score=57.93  Aligned_cols=48  Identities=17%  Similarity=0.409  Sum_probs=35.3

Q ss_pred             CCCceeeccC---CCCeEEeeCCCCCcccccccccCCCCc-----cCCCCCccccccchh
Q 041295           39 EEEPCIKCNR---RDESLLVCIQSGCPISVHENCLSCGVK-----SDDVGNIYCPYFWYK   90 (209)
Q Consensus        39 neD~CikC~k---dGq~LL~Cs~~gCPlAvH~kClg~sl~-----~dd~GnfYCPyC~yk   90 (209)
                      +...| +|++   ++. +|.|+  .|...||..|++.+..     ..+...||||.|...
T Consensus        15 ~~~~C-iC~~~~~~~~-mi~Cd--~C~~w~H~~Cvg~~~~~~~~~~~~~~~w~C~~C~~~   70 (76)
T d1wema_          15 NALYC-ICRQPHNNRF-MICCD--RCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL   70 (76)
T ss_dssp             TCCCS-TTCCCCCSSC-EEECS--SSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred             CcCEE-ECCCccCCCe-EEEEC--CCCCcCCccccCCCcccccccCCCCCcEECCCCcCc
Confidence            45557 5876   444 99999  9999999999986432     133567999999643

>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At1g33420
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.79  E-value=9.5e-06  Score=55.13  Aligned_cols=45  Identities=24%  Similarity=0.528  Sum_probs=36.3

Q ss_pred             eeeccC---CCCeEEeeCCCCCcccccccccCCCCccCCCCCccccccchh
Q 041295           43 CIKCNR---RDESLLVCIQSGCPISVHENCLSCGVKSDDVGNIYCPYFWYK   90 (209)
Q Consensus        43 CikC~k---dGq~LL~Cs~~gCPlAvH~kClg~sl~~dd~GnfYCPyC~yk   90 (209)
                      | +|+.   ++..+|.|+  .|..-||..|++.+..-.+.++|+||.|.-+
T Consensus        19 C-~C~~~~~~~~~mv~Cd--~C~~w~H~~C~g~~~~~~~~~~~~C~~C~~~   66 (72)
T d1weea_          19 C-KCGTKDDDGERMLACD--GCGVWHHTRCIGINNADALPSKFLCFRCIEL   66 (72)
T ss_dssp             C-TTCCCSCCSSCEEECS--SSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred             e-eCCCCcCCCCeEEEeC--CCCCcCchhhcCCccccCCCCcEECcCCcCc
Confidence            5 3654   343389999  9999999999998777677799999999754

>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Sumoylation ligase E3, SIZ1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.69  E-value=1.4e-05  Score=55.37  Aligned_cols=63  Identities=19%  Similarity=0.320  Sum_probs=43.7

Q ss_pred             CCCCCCcccCCCCCCCceeeccCC---CCeEEeeCCCCCcccccccccCCCCc-----cCCCCCccccccchh
Q 041295           26 SGRSRDFMDVDLLEEEPCIKCNRR---DESLLVCIQSGCPISVHENCLSCGVK-----SDDVGNIYCPYFWYK   90 (209)
Q Consensus        26 S~~S~Ds~~~d~~neD~CikC~kd---Gq~LL~Cs~~gCPlAvH~kClg~sl~-----~dd~GnfYCPyC~yk   90 (209)
                      |+.+....++++-+.-.| +|+..   |. ++.|.-..|..-||..|++.+..     ......|+||.|.-+
T Consensus         2 ss~~~~~~~~~~~~~~~C-~C~~~~~~~~-~i~c~c~~C~~W~H~~Cvgi~~~~~~~~~~~~~~~~C~~C~~~   72 (78)
T d1wewa_           2 SSGSSGEDPFQPEIKVRC-VCGNSLETDS-MIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT   72 (78)
T ss_dssp             CCCCCCCCSSSCCCCCCC-SSCCCCCCSC-EEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred             CCCccCCCccCCCCccEe-ECCCccCCCc-EEEEeCCCCCcCCCccccCccccccccccCCCCEEECCCCcCc
Confidence            455445556666666788 69884   45 77787558999999999986432     112236999999754

>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.15  E-value=4e-05  Score=53.24  Aligned_cols=45  Identities=18%  Similarity=0.341  Sum_probs=33.6

Q ss_pred             ceeeccCC---CCeEEeeCCCCCcccccccccCCCCcc-CCCCCccccccc
Q 041295           42 PCIKCNRR---DESLLVCIQSGCPISVHENCLSCGVKS-DDVGNIYCPYFW   88 (209)
Q Consensus        42 ~CikC~kd---Gq~LL~Cs~~gCPlAvH~kClg~sl~~-dd~GnfYCPyC~   88 (209)
                      +|-+|++.   +...|.|+  .|..-||..|++..... .+.+.|+||.|.
T Consensus        13 v~CiC~~~~~~~~~mI~Cd--~C~~W~H~~C~g~~~~~~~~~~~~~C~~C~   61 (79)
T d1wepa_          13 VYCLCRQPYNVNHFMIECG--LCQDWFHGSCVGIEEENAVDIDIYHCPDCE   61 (79)
T ss_dssp             CCSTTSCSCCSSSCEEEBT--TTCCEEEHHHHTCCHHHHTTCSBBCCTTTT
T ss_pred             eEeECCCccCCCCcEEECC--CCCCcEeccccCcchhcCCCCCEEECccCc
Confidence            33479873   22277899  99999999999975433 445789999996

>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: variant PHD-like domain
domain: Hypothetical protein KIAA1045
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.51  E-value=0.013  Score=43.03  Aligned_cols=50  Identities=26%  Similarity=0.476  Sum_probs=38.4

Q ss_pred             CCCCCceeeccC-CCCeEEeeCCCCCcccccccccCCC------------CccCCCCCccccccc
Q 041295           37 LLEEEPCIKCNR-RDESLLVCIQSGCPISVHENCLSCG------------VKSDDVGNIYCPYFW   88 (209)
Q Consensus        37 ~~neD~CikC~k-dGq~LL~Cs~~gCPlAvH~kClg~s------------l~~dd~GnfYCPyC~   88 (209)
                      ..++..|.+|.. .+++|++|-  -|-+.||..||..-            ..-.-.--|.|+||-
T Consensus        12 v~~D~mC~vC~v~t~~~l~pCR--vCtRv~H~~CL~r~gyl~~e~a~e~~e~A~T~~GWSC~~C~   74 (89)
T d1wila_          12 VVNDEMCDVCEVWTAESLFPCR--VCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCD   74 (89)
T ss_dssp             CCCSCCCTTTCCCCSSCCSSCS--SSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTC
T ss_pred             CCcCccccccCcccccceecce--eecchhhHHHHHHhcccccHHHHHHHHhhcCCCCcchhhhc
Confidence            458899999977 555599999  99999999998631            122334569999995

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=93.04  E-value=0.0021  Score=41.57  Aligned_cols=50  Identities=26%  Similarity=0.315  Sum_probs=36.0

Q ss_pred             CCCceeeccCCC--CeEEeeCCCCCcccccccccCCCCccCCCCCccccccchh
Q 041295           39 EEEPCIKCNRRD--ESLLVCIQSGCPISVHENCLSCGVKSDDVGNIYCPYFWYK   90 (209)
Q Consensus        39 neD~CikC~kdG--q~LL~Cs~~gCPlAvH~kClg~sl~~dd~GnfYCPyC~yk   90 (209)
                      +..+|.+|-.+.  ..+.+|.-.+|.-.||..|+..=  +..+++.-||.|..+
T Consensus         5 d~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W--~~~~~~~~CP~Cr~~   56 (60)
T d1vyxa_           5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTW--LTISRNTACQICGVV   56 (60)
T ss_dssp             SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHH--HHHHTCSBCTTTCCB
T ss_pred             CCCCCccCCccCCCceeEecccCCCCCEEcHHHHHHH--HhhCCCCCCcccCCe
Confidence            667899997633  32566665588999999999842  233567889999754

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=83.56  E-value=0.21  Score=31.76  Aligned_cols=46  Identities=20%  Similarity=0.384  Sum_probs=32.4

Q ss_pred             CCCceeeccC---CCCeEEeeCCCCCcccccccccCCCCccCCCCCccccccchh
Q 041295           39 EEEPCIKCNR---RDESLLVCIQSGCPISVHENCLSCGVKSDDVGNIYCPYFWYK   90 (209)
Q Consensus        39 neD~CikC~k---dGq~LL~Cs~~gCPlAvH~kClg~sl~~dd~GnfYCPyC~yk   90 (209)
                      +...|.+|-.   .|+.++.+.  .|--.||..|+..-+..    +--||+|..+
T Consensus         4 d~~~C~ICl~~~~~~~~~~~l~--~C~H~Fh~~Ci~~Wl~~----~~~CP~CR~~   52 (55)
T d1iyma_           4 DGVECAVCLAELEDGEEARFLP--RCGHGFHAECVDMWLGS----HSTCPLCRLT   52 (55)
T ss_dssp             CSCCCTTTCCCCCTTSCCEECS--SSCCEECTTHHHHTTTT----CCSCSSSCCC
T ss_pred             CCCCCeEECccccCCCEEEEeC--CCCCcccHHHHHHHHHh----CCcCCCCCCE
Confidence            3456999965   455466665  68899999999864432    3469999864