Citrus Sinensis ID: 041301

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-
Protein Sequence
MIGWEDVYKVIVAMVPLYFALILGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTTHVDPFNMNYRFIGADAISKLIIVIVLAFWGMCSKKGSCFSWCITNFSLCTLTNTLVLGVPLMKAMYGQMAVDLVVQSSVFQSIVWFTIFLFILEFRRAGNALEDLEEGHATSSSRPSFWHLMKVVWLKLAKNPNSYACVIGLAWAFVANRWHFKMPSIIEGSILIMSKAGTGTAMFSMGIFMALQEKLLACGPSLTAFGMVLKFIAGPAAMAIGSIATGLRGDVLRVSIIQ
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHcccccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEcc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEHccccccEEEHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHcccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEc
Coil and Loop (DISEMBL)
MIGWEDVYKVIVAMVPLYFALILGYgsvkwwkiiaPEECAAINRLVCyftlplftieftthvdpfnmnyrfigADAISKLIIVIVLAFWGmcskkgscfswcitnfslctlTNTLVLGVPLMKAMYGQMAVDLVVQSSVFQSIVWFTIFLFILEFRRAGNAledleeghatsssrpsfWHLMKVVWLKlaknpnsyACVIGLAWAFVAnrwhfkmpsiiEGSILIMskagtgtaMFSMGIFMALQEKLLACGPSLTAFGMVLKFIAGPAAMAIGSIatglrgdvLRVSIIQ
Flexible Loop (DISEMBL)
MIGWEDVYKVIVAMVPLYFALILGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTTHVDPFNMNYRFIGADAISKLIIVIVLAFWGMCSKKGSCFSWCITNFSLCTLTNTLVLGVPLMKAMYGQMAVDLVVQSSVFQSIVWFTIFLFILEFRRAGNALEDLEEghatsssrpsfWHLMKVVWLKLAKNPNSYACVIGLAWAFVANRWHFKMPSIIEGSILIMSKAGTGTAMFSMGIFMALQEKLLACGPSLTAFGMVLKFIAGPAAMAIGSiatglrgdVLRVSIIQ
Low Complexity Region (SEG)
MIGWEDVYKVIVAMVPLYFALILGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTTHVDPFNMNYRFIGADAISKLIIVIVLAFWGMCSKKGSCFSWCITNFSLCTLTNTLVLGVPLMKAMYGQMAVDLVVQSSVFQSIVWFTIFLFILEFRRAGNALEDLEEGHATSSSRPSFWHLMKVVWLKLAKNPNSYACVIGLAWAFVANRWHFKMPSIIEGSILIMSKAGTGTAMFSMGIFMALQEKLLACGPSLTAFGMVLKFIAGPAAMAIGSIATGLRGDVLRVSIIQ
Disordered region (IsUnstruct)
*IGWEDVYKVIVAMVPLYFALILGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTTHVDPFNMNYRFIGADAISKLIIVIVLAFWGMCSKKGSCFSWCITNFSLCTLTNTLVLGVPLMKAMYGQMAVDLVVQSSVFQSIVWFTIFLFILEFRRAGNAL**************SFWHLMKVVWLKLAKNPNSYACVIGLAWAFVANRWHFKMPSIIEGSILIMSKAGTGTAMFSMGIFMALQEKLLACGPSLTAFGMVLKFIAGPAAMAIGSIATGLRGDVLRVSI**
Disordered Region (DISOPRED)
**GWEDVYKVIVAMVPLYFALILGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTTHVDPFNMNYRFIGADAISKLIIVIVLAFWGMCSKKGSCFSWCITNFSLCTLTNTLVLGVPLMKAMYGQMAVDLVVQSSVFQSIVWFTIFLFILEFRRAGNAL******************LMKVVWLKLAKNPNSYACVIGLAWAFVANRWHFKMPSIIEGSILIMSKAGTGTAMFSMGIFMALQEKLLACGPSLTAFGMVLKFIAGPAAMAIGSIATGLRGDVLRVSIIQ
Disordered Region (DISEMBL)
MIGWEDVYKVIVAMVPLYFALILGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTTHVDPFNMNYRFIGADAISKLIIVIVLAFWGMCSKKGSCFSWCITNFSLCTLTNTLVLGVPLMKAMYGQMAVDLVVQSSVFQSIVWFTIFLFILEFRRAGNALED**********RPSFWHLMKVVWLKLAKNPNSYACVIGLAWAFVANRWHFKMPSIIEGSILIMSKAGTGTAMFSMGIFMALQEKLLACGPSLTAFGMVLKFIAGPAAMAIGSIATGLRGDVLRVSIIQ
Disordered Region (DISPRO)
MIGWEDVYKVIVAMVPLYFALILGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTTHVDPFNMNYRFIGADAISKLIIVIVLAFWGMCSKKGSCFSWCITNFSLCTLTNTLVLGVPLMKAMYGQMAVDLVVQSSVFQSIVWFTIFLFILEFRRAGNALEDL*E*HATSSSRPSFWHLMKVVWLKLAKNPNSYACVIGLAWAFVANRWHFKMPSIIEGSILIMSKAGTGTAMFSMGIFMALQEKLLACGPSLTAFGMVLKFIAGPAAMAIGSIATGLRGDVLRVSIIQ
Transmembrane Helix (TMHMM)
oooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MIGWEDVYKVIVAMVPLYFALILGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTTHVDPFNMNYRFIGADAISKLIIVIVLAFWGMCSKKGSCFSWCITNFSLCTLTNTLVLGVPLMKAMYGQMAVDLVVQSSVFQSIVWFTIFLFILEFRRAGNALEDLEEGHATSSSRPSFWHLMKVVWLKLAKNPNSYACVIGLAWAFVANRWHFKMPSIIEGSILIMSKAGTGTAMFSMGIFMALQEKLLACGPSLTAFGMVLKFIAGPAAMAIGSIATGLRGDVLRVSIIQ
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	291	2.2.26 [Sep-21-2011]
Q9FFD0	351	Putative auxin efflux car	yes	no	0.996	0.826	0.696	1e-118
Q5JLM1	363	Probable auxin efflux car	yes	no	1.0	0.801	0.579	7e-99
Q6ZIB5	370	Probable auxin efflux car	no	no	1.0	0.786	0.496	1e-80
Q9LFP6	367	Putative auxin efflux car	no	no	1.0	0.792	0.365	3e-52
Q8RWZ6	616	Auxin efflux carrier comp	no	no	0.635	0.300	0.478	1e-44
Q9LU77	647	Auxin efflux carrier comp	no	no	0.539	0.242	0.506	9e-44
Q67UL3	592	Probable auxin efflux car	no	no	0.539	0.265	0.506	4e-43
Q5SMQ9	595	Auxin efflux carrier comp	no	no	0.539	0.263	0.5	2e-42
Q9S7Z8	640	Auxin efflux carrier comp	no	no	0.539	0.245	0.493	2e-42
Q940Y5	619	Auxin efflux carrier comp	no	no	0.539	0.253	0.493	4e-42

>sp|Q9FFD0|PIN8_ARATH Putative auxin efflux carrier component 8 OS=Arabidopsis thaliana GN=PIN8 PE=3 SV=2

 Score =  426 bits (1094), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 211/303 (69%), Positives = 241/303 (79%), Gaps = 13/303 (4%)

Query: 1   MIGWEDVYKVIVAMVPLYFALILGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTT 60
           MI   DVYKVI AMVPLY ALILGYGSVKWW I   ++C AINRLVCYFTLPLFTIEFT 
Sbjct: 1   MINCGDVYKVIEAMVPLYVALILGYGSVKWWHIFTRDQCDAINRLVCYFTLPLFTIEFTA 60

Query: 61  HVDPFNMNYRFIGADAISKLIIVIVLAFWGMCSKKGSCFSWCITNFSLCTLTNTLVLGVP 120
           HVDPFNMNYRFI AD +SK+IIV VLA W   S KGS + W IT+FSLCTLTN+LV+GVP
Sbjct: 61  HVDPFNMNYRFIAADVLSKVIIVTVLALWAKYSNKGS-YCWSITSFSLCTLTNSLVVGVP 119

Query: 121 LMKAMYGQMAVDLVVQSSVFQSIVWFTIFLFILEFRRAG---NALEDLEEGHATSSS--- 174
           L KAMYGQ AVDLVVQSSVFQ+IVW T+ LF+LEFR+AG   N + D++  +    S   
Sbjct: 120 LAKAMYGQQAVDLVVQSSVFQAIVWLTLLLFVLEFRKAGFSSNNISDVQVDNINIESGKR 179

Query: 175 ------RPSFWHLMKVVWLKLAKNPNSYACVIGLAWAFVANRWHFKMPSIIEGSILIMSK 228
                   SF  +M +VWLKLA NPN Y+C++G+AWAF++NRWH ++P I+EGSILIMSK
Sbjct: 180 ETVVVGEKSFLEVMSLVWLKLATNPNCYSCILGIAWAFISNRWHLELPGILEGSILIMSK 239

Query: 229 AGTGTAMFSMGIFMALQEKLLACGPSLTAFGMVLKFIAGPAAMAIGSIATGLRGDVLRVS 288
           AGTGTAMF+MGIFMALQEKL+ CG SLT  GMVLKFIAGPAAMAIGSI  GL GDVLRV+
Sbjct: 240 AGTGTAMFNMGIFMALQEKLIVCGTSLTVMGMVLKFIAGPAAMAIGSIVLGLHGDVLRVA 299

Query: 289 IIQ 291
           IIQ
Sbjct: 300 IIQ 302

May act as a transmembrane component of the auxin efflux carrier.
Arabidopsis thaliana (taxid: 3702)

>sp|Q5JLM1|PIN6_ORYSJ Probable auxin efflux carrier component 6 OS=Oryza sativa subsp. japonica GN=PIN6 PE=2 SV=1

 Score =  360 bits (924), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 182/314 (57%), Positives = 223/314 (71%), Gaps = 23/314 (7%)

Query: 1   MIGWEDVYKVIVAMVPLYFALILGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTT 60
           MIGW DVYKV+ A VPLYFAL LGYGSV+WW+I   E+C A+NRLV +F LP FT EFT 
Sbjct: 1   MIGWGDVYKVVAATVPLYFALFLGYGSVRWWRIFTREQCDAVNRLVAFFALPFFTFEFTL 60

Query: 61  HVDPFNMNYRFIGADAISKLIIVIVLAFWGMCSKKGSC-FSWCITNFSLCTLTNTLVLGV 119
           H DPF +NYR + AD ISK +IV V+  W     KG C  SW IT+FSL TLTN+LV+GV
Sbjct: 61  HTDPFQVNYRAVAADVISKAVIVAVIGAWARFMSKGGCAVSWSITSFSLSTLTNSLVVGV 120

Query: 120 PLMKAMYGQMAVDLVVQSSVFQSIVWFTIFLFILEFRRAGNAL------------EDLEE 167
           P+ +AMYG+ A  LVVQ SVFQ+IVW T+ LF+LE R+A   +            +D+E 
Sbjct: 121 PMARAMYGEWAQQLVVQLSVFQAIVWLTLLLFVLEVRKAAIGMYVDGAEAAAAAGKDVEA 180

Query: 168 GHATSSS----------RPSFWHLMKVVWLKLAKNPNSYACVIGLAWAFVANRWHFKMPS 217
             A +++          +PS W L+KVV  KLA+NPN+YA  +G+ WA +ANR H  +PS
Sbjct: 181 AGAAAAAGTVVVAAAAGKPSLWALVKVVAHKLARNPNTYASFVGITWACLANRLHIALPS 240

Query: 218 IIEGSILIMSKAGTGTAMFSMGIFMALQEKLLACGPSLTAFGMVLKFIAGPAAMAIGSIA 277
             EGS+LIMSK+GTG AMFSMG+FMA QEK++ACG S  A G+VLKF  GPAAMAIGSIA
Sbjct: 241 AFEGSVLIMSKSGTGMAMFSMGLFMAQQEKIIACGTSFAALGLVLKFALGPAAMAIGSIA 300

Query: 278 TGLRGDVLRVSIIQ 291
            GLRGDVLRV+IIQ
Sbjct: 301 VGLRGDVLRVAIIQ 314

May act as a component of the auxin efflux carrier.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6ZIB5|PIN4_ORYSJ Probable auxin efflux carrier component 4 OS=Oryza sativa subsp. japonica GN=PIN4 PE=2 SV=1

 Score =  300 bits (767), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 160/322 (49%), Positives = 201/322 (62%), Gaps = 31/322 (9%)

Query: 1   MIGWEDVYKVIVAMVPLYFALILGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTT 60
           MIGW DVYKV+ AM PLYFAL LGYGSV+WW+    E+CAAIN +V YF++P FT +F  
Sbjct: 1   MIGWGDVYKVVGAMAPLYFALGLGYGSVRWWRFFTAEQCAAINTMVVYFSMPFFTFDFVV 60

Query: 61  HVDPFNMNYRFIGADAISKLIIVIVLAFWGMCSKKGSCF-----SWCITNFSLCTLTNTL 115
             DPF MNYR I ADA+SK I +  +A W       +       SW IT FSL  L NTL
Sbjct: 61  RTDPFAMNYRVIAADAVSKAIAIAAMAAWARTRCGCAAAKAGAQSWSITGFSLAALNNTL 120

Query: 116 VLGVPLMKAMYGQMAVDLVVQSSVFQSIVWFTIFLFILEFRRAGNALEDLEEGHA--TSS 173
           V+GVPL+ AMYG+ A DLVVQ +V QS+VWF + L   E R+A         G A  +SS
Sbjct: 121 VVGVPLLDAMYGRWAQDLVVQIAVVQSMVWFPLLLMAFELRKAWVVGGGGGVGPAVMSSS 180

Query: 174 SRPS------------------------FWHLMKVVWLKLAKNPNSYACVIGLAWAFVAN 209
           S P                         FW   + V LKLA+NPN YA V+G+ WA +A 
Sbjct: 181 SPPEKQSDVEMNGAVVAAPGGGGGVRLPFWATARTVGLKLARNPNVYASVLGVVWACIAY 240

Query: 210 RWHFKMPSIIEGSILIMSKAGTGTAMFSMGIFMALQEKLLACGPSLTAFGMVLKFIAGPA 269
           RWH  +P I+ GS+ +MS+ GTG +MFSMG+FM  QE+++ACG  LTA GM L+F+AGP 
Sbjct: 241 RWHLSLPGIVTGSLQVMSRTGTGMSMFSMGLFMGQQERVIACGAGLTALGMALRFVAGPL 300

Query: 270 AMAIGSIATGLRGDVLRVSIIQ 291
           A  +G+ A GLRGDVL ++IIQ
Sbjct: 301 ATLVGAAALGLRGDVLHLAIIQ 322

May act as a component of the auxin efflux carrier.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9LFP6|PIN5_ARATH Putative auxin efflux carrier component 5 OS=Arabidopsis thaliana GN=PIN5 PE=3 SV=1

 Score =  205 bits (521), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 117/320 (36%), Positives = 180/320 (56%), Gaps = 29/320 (9%)

Query: 1   MIGWEDVYKVIVAMVPLYFALILGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTT 60
           MI W D+Y V+ A VPLY ++ LG+ S +  K+ +PE+CA IN+ V  F++PL + +  +
Sbjct: 1   MISWLDIYHVVSATVPLYVSMTLGFLSARHLKLFSPEQCAGINKFVAKFSIPLLSFQIIS 60

Query: 61  HVDPFNMNYRFIGADAISKLIIVIVLA----FWGMCSKKGSCFSWCITNFSLCTLTNTLV 116
             +PF M+ + I +D + K ++V+VLA    FW     +G    W IT  S+  L NTL+
Sbjct: 61  ENNPFKMSPKLILSDILQKFLVVVVLAMVLRFWHPTGGRGGKLGWVITGLSISVLPNTLI 120

Query: 117 LGVPLMKAMYGQMAVDLVVQSSVFQSIVWFTIFLFILEFRRA------GNALE----DLE 166
           LG+P++ A+YG  A  ++ Q  V QS++W+TI LF+ E   A      G +LE    D E
Sbjct: 121 LGMPILSAIYGDEAASILEQIVVLQSLIWYTILLFLFELNAARALPSSGASLEHTGNDQE 180

Query: 167 EGHATSSS------------RPSFWHLMKVV---WLKLAKNPNSYACVIGLAWAFVANRW 211
           E +                 R      MK++   W KL  NPN+YA +IG+ WA +  R 
Sbjct: 181 EANIEDEPKEEEDEEEVAIVRTRSVGTMKILLKAWRKLIINPNTYATLIGIIWATLHFRL 240

Query: 212 HFKMPSIIEGSILIMSKAGTGTAMFSMGIFMALQEKLLACGPSLTAFGMVLKFIAGPAAM 271
            + +P +I+ SI ++S  G G AMFS+G+FMA Q  ++ACG  +    M+LKF+ GPA M
Sbjct: 241 GWNLPEMIDKSIHLLSDGGLGMAMFSLGLFMASQSSIIACGTKMAIITMLLKFVLGPALM 300

Query: 272 AIGSIATGLRGDVLRVSIIQ 291
              +    L+  + +V+I+Q
Sbjct: 301 IASAYCIRLKSTLFKVAILQ 320

May act as a component of the auxin efflux carrier.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RWZ6|PIN4_ARATH Auxin efflux carrier component 4 OS=Arabidopsis thaliana GN=PIN4 PE=1 SV=1

 Score =  180 bits (456), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 90/188 (47%), Positives = 124/188 (65%), Gaps = 3/188 (1%)

Query: 1   MIGWEDVYKVIVAMVPLYFALILGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTT 60
           MI W D+Y V+ A+VPLY A+IL YGSV+WWKI +P++C+ INR V  F +PL +  F +
Sbjct: 1   MITWHDLYTVLTAVVPLYVAMILAYGSVQWWKIFSPDQCSGINRFVAIFAVPLLSFHFIS 60

Query: 61  HVDPFNMNYRFIGADAISKLIIVIVLAFWGMCSKKGSCFSWCITNFSLCTLTNTLVLGVP 120
             DP+ MN+RF+ AD + K+I++++LA W   +K GS   W IT FSL TL NTLV+G+P
Sbjct: 61  TNDPYAMNFRFVAADTLQKIIMLVLLALWANLTKNGS-LEWMITIFSLSTLPNTLVMGIP 119

Query: 121 LMKAMYGQMAVDLVVQSSVFQSIVWFTIFLFILEFRRAGNALEDLEEGHATSSSRPSFWH 180
           L+ AMYG  A  L+VQ  V Q I+W+T+ LF+ E+R  G  L  +E+   T +S  SF  
Sbjct: 120 LLIAMYGTYAGSLMVQVVVLQCIIWYTLLLFLFEYR--GAKLLIMEQFPETGASIVSFKV 177

Query: 181 LMKVVWLK 188
              VV L 
Sbjct: 178 ESDVVSLD 185

Acts as a component of the auxin efflux carrier. Plays a role in generating a sink for auxin into columella cells. Maintains the endogenous auxin gradient, which is essential for correct root patterning.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LU77|PIN2_ARATH Auxin efflux carrier component 2 OS=Arabidopsis thaliana GN=PIN2 PE=1 SV=2

 Score =  177 bits (449), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 80/158 (50%), Positives = 111/158 (70%), Gaps = 1/158 (0%)

Query: 1   MIGWEDVYKVIVAMVPLYFALILGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTT 60
           MI  +D+Y V+ AMVPLY A+IL YGSV+WW I  P++C+ INR V  F +PL +  F +
Sbjct: 1   MITGKDMYDVLAAMVPLYVAMILAYGSVRWWGIFTPDQCSGINRFVAVFAVPLLSFHFIS 60

Query: 61  HVDPFNMNYRFIGADAISKLIIVIVLAFWGMCSKKGSCFSWCITNFSLCTLTNTLVLGVP 120
             DP+ MNY F+ AD++ K++I+  L  W   S++GS   W IT FSL TL NTLV+G+P
Sbjct: 61  SNDPYAMNYHFLAADSLQKVVILAALFLWQAFSRRGS-LEWMITLFSLSTLPNTLVMGIP 119

Query: 121 LMKAMYGQMAVDLVVQSSVFQSIVWFTIFLFILEFRRA 158
           L++AMYG  + +L+VQ  V QSI+W+T+ LF+ EFR A
Sbjct: 120 LLRAMYGDFSGNLMVQIVVLQSIIWYTLMLFLFEFRGA 157

Acts as a component of the auxin efflux carrier. Seems to be involved in the root-specific auxin transport, and mediates the root gravitropism. Its particular localization suggest a role in the translocation of auxin towards the elongation zone.

Arabidopsis thaliana (taxid: 3702)

>sp|Q67UL3|PIN1C_ORYSJ Probable auxin efflux carrier component 1c OS=Oryza sativa subsp. japonica GN=PIN1C PE=2 SV=1

 Score =  175 bits (443), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 80/158 (50%), Positives = 108/158 (68%), Gaps = 1/158 (0%)

Query: 1   MIGWEDVYKVIVAMVPLYFALILGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTT 60
           MI   D Y V+ AMVPLY A+IL YGSVKWW+I  P++C+ INR V  F +PL +  F +
Sbjct: 1   MITGADFYHVMTAMVPLYVAMILAYGSVKWWRIFTPDQCSGINRFVALFAVPLLSFHFIS 60

Query: 61  HVDPFNMNYRFIGADAISKLIIVIVLAFWGMCSKKGSCFSWCITNFSLCTLTNTLVLGVP 120
             +P+ MN RFI AD + KLI++ +L  W   S++GS   W IT FSL TL NTLV+G+P
Sbjct: 61  TNNPYTMNLRFIAADTLQKLIVLALLTLWSHLSRRGS-LEWTITLFSLSTLPNTLVMGIP 119

Query: 121 LMKAMYGQMAVDLVVQSSVFQSIVWFTIFLFILEFRRA 158
           L+K MYG+ +  L+VQ  V Q I+W+T+ LF+ E+R A
Sbjct: 120 LLKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGA 157

May act as a component of the auxin efflux carrier.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q5SMQ9|PIN1_ORYSJ Auxin efflux carrier component 1 OS=Oryza sativa subsp. japonica GN=PIN1 PE=2 SV=1

 Score =  173 bits (438), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 79/158 (50%), Positives = 108/158 (68%), Gaps = 1/158 (0%)

Query: 1   MIGWEDVYKVIVAMVPLYFALILGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTT 60
           MI   D Y V+ AMVPLY A+IL YGSVKWW+I  P++C+ INR V  F +PL +  F +
Sbjct: 1   MITAADFYHVMTAMVPLYVAMILAYGSVKWWRIFTPDQCSGINRFVALFAVPLLSFHFIS 60

Query: 61  HVDPFNMNYRFIGADAISKLIIVIVLAFWGMCSKKGSCFSWCITNFSLCTLTNTLVLGVP 120
             +P+ MN RFI AD + KL+++ +L  W   S++GS   W IT FSL TL NTLV+G+P
Sbjct: 61  TNNPYTMNLRFIAADTLQKLMVLAMLTAWSHLSRRGS-LEWTITLFSLSTLPNTLVMGIP 119

Query: 121 LMKAMYGQMAVDLVVQSSVFQSIVWFTIFLFILEFRRA 158
           L+K MYG+ +  L+VQ  V Q I+W+T+ LF+ E+R A
Sbjct: 120 LLKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGA 157

Acts as a component of the auxin efflux carrier. Seems to be involved in the polar auxin transport which may promote adventitious root emergence and control tillering.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9S7Z8|PIN3_ARATH Auxin efflux carrier component 3 OS=Arabidopsis thaliana GN=PIN3 PE=1 SV=1

 Score =  172 bits (437), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 78/158 (49%), Positives = 110/158 (69%), Gaps = 1/158 (0%)

Query: 1   MIGWEDVYKVIVAMVPLYFALILGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTT 60
           MI W D+Y V+ A++PLY A+IL YGSV+WWKI +P++C+ INR V  F +PL +  F +
Sbjct: 1   MISWHDLYTVLTAVIPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFIS 60

Query: 61  HVDPFNMNYRFIGADAISKLIIVIVLAFWGMCSKKGSCFSWCITNFSLCTLTNTLVLGVP 120
             +P+ MN RFI AD + K+I++ +L  W   ++ GS   W IT FSL TL NTLV+G+P
Sbjct: 61  TNNPYAMNLRFIAADTLQKIIMLSLLVLWANFTRSGS-LEWSITIFSLSTLPNTLVMGIP 119

Query: 121 LMKAMYGQMAVDLVVQSSVFQSIVWFTIFLFILEFRRA 158
           L+ AMYG+ +  L+VQ  V Q I+W+T+ LF+ EFR A
Sbjct: 120 LLIAMYGEYSGSLMVQIVVLQCIIWYTLLLFLFEFRGA 157

Acts as a component of the auxin efflux carrier. Seems to be involved in the lateral auxin transport system and mediates tropic growth. Coordinated polar localization of PIN3 is directly regulated by the vesicle trafficking process.

Arabidopsis thaliana (taxid: 3702)

>sp|Q940Y5|PIN7_ARATH Auxin efflux carrier component 7 OS=Arabidopsis thaliana GN=PIN7 PE=1 SV=2

 Score =  172 bits (435), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 78/158 (49%), Positives = 110/158 (69%), Gaps = 1/158 (0%)

Query: 1   MIGWEDVYKVIVAMVPLYFALILGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTT 60
           MI W D+Y V+ A++PLY A+IL YGSV+WWKI +P++C+ INR V  F +PL +  F +
Sbjct: 1   MITWHDLYTVLTAVIPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFIS 60

Query: 61  HVDPFNMNYRFIGADAISKLIIVIVLAFWGMCSKKGSCFSWCITNFSLCTLTNTLVLGVP 120
             +P+ MN RFI AD + KLI++ +L  W   ++ GS   W IT FSL TL NTLV+G+P
Sbjct: 61  SNNPYAMNLRFIAADTLQKLIMLTLLIIWANFTRSGS-LEWSITIFSLSTLPNTLVMGIP 119

Query: 121 LMKAMYGQMAVDLVVQSSVFQSIVWFTIFLFILEFRRA 158
           L+ AMYG+ +  L+VQ  V Q I+W+T+ LF+ E+R A
Sbjct: 120 LLIAMYGEYSGSLMVQIVVLQCIIWYTLLLFLFEYRGA 157

Acts as a component of the auxin efflux carrier. Mediates the initial auxin gradient which contributes to the establishment of the apical-basal axis in early embryogenesis.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	291
225431003	356	PREDICTED: putative auxin efflux carrier	0.996	0.814	0.698	1e-125
224128940	346	auxin efflux carrier component [Populus	0.996	0.838	0.734	1e-124
224144932	346	auxin efflux carrier component [Populus	0.996	0.838	0.741	1e-123
255543120	357	conserved hypothetical protein [Ricinus	0.996	0.812	0.721	1e-122
449477700	371	PREDICTED: putative auxin efflux carrier	0.996	0.781	0.664	1e-117
449470249	371	PREDICTED: putative auxin efflux carrier	0.996	0.781	0.667	1e-117
240256298	351	putative auxin efflux carrier component	0.996	0.826	0.696	1e-117
357507711	363	Auxin Efflux Carrier [Medicago truncatul	0.996	0.798	0.650	1e-115
297807677	352	hypothetical protein ARALYDRAFT_326097 [	0.996	0.823	0.694	1e-112
356531914	377	PREDICTED: putative auxin efflux carrier	0.996	0.769	0.598	1e-103

>gi|225431003|ref|XP_002279191.1| PREDICTED: putative auxin efflux carrier component 8 [Vitis vinifera] gi|297735290|emb|CBI17652.3| unnamed protein product [Vitis vinifera]

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 215/308 (69%), Positives = 253/308 (82%), Gaps = 18/308 (5%)

Query: 1   MIGWEDVYKVIVAMVPLYFALILGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTT 60
           MIGWEDVYKV+VAM+PLY AL+LGYGSVKWW+I  P++C AINRLVCYFTLPLFT EFT 
Sbjct: 1   MIGWEDVYKVVVAMLPLYVALVLGYGSVKWWRIFTPDQCDAINRLVCYFTLPLFTFEFTA 60

Query: 61  HVDPFNMNYRFIGADAISKLIIVIVLAFWGMCSKKGSCFSWCITNFSLCTLTNTLVLGVP 120
           HVDPF MNY FIGADA+SKLIIV+VLA W  CS KGS + W IT+FSL TLTN+LV+GVP
Sbjct: 61  HVDPFKMNYLFIGADAVSKLIIVLVLALWAKCSSKGS-YCWSITSFSLATLTNSLVVGVP 119

Query: 121 LMKAMYGQMAVDLVVQSSVFQSIVWFTIFLFILEFRRAGNAL-----------------E 163
           L+KAMYG + VDLVVQSSV Q+I+W T+ LF+LEFRR G  +                 +
Sbjct: 120 LIKAMYGPLGVDLVVQSSVVQAIIWLTLLLFVLEFRRTGTGISSNTTMGDSGVIEVEPGK 179

Query: 164 DLEEGHATSSSRPSFWHLMKVVWLKLAKNPNSYACVIGLAWAFVANRWHFKMPSIIEGSI 223
           DLE      S+R SFW LM+ VWLKLA+NPNSYAC+IG+ WAF+ANRWHF+MPSI+EGSI
Sbjct: 180 DLETNEMVVSTRLSFWSLMRKVWLKLAQNPNSYACIIGIVWAFIANRWHFEMPSIMEGSI 239

Query: 224 LIMSKAGTGTAMFSMGIFMALQEKLLACGPSLTAFGMVLKFIAGPAAMAIGSIATGLRGD 283
           LIMS+AGTGTAMFSMG+FMA+QEK++ACG +LT FGMVL+FIAGPAAMAIG+IA GL GD
Sbjct: 240 LIMSRAGTGTAMFSMGLFMAMQEKIIACGTTLTVFGMVLRFIAGPAAMAIGAIAVGLHGD 299

Query: 284 VLRVSIIQ 291
           VLR++IIQ
Sbjct: 300 VLRIAIIQ 307

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128940|ref|XP_002329004.1| auxin efflux carrier component [Populus trichocarpa] gi|222839238|gb|EEE77589.1| auxin efflux carrier component [Populus trichocarpa]

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 219/298 (73%), Positives = 256/298 (85%), Gaps = 8/298 (2%)

Query: 1   MIGWEDVYKVIVAMVPLYFALILGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTT 60
           MIGWEDVYKV+VAMVPLY AL+LGYGSV+WWK+  PE+C AINR VCYFTLPLFT EFT 
Sbjct: 1   MIGWEDVYKVVVAMVPLYVALVLGYGSVRWWKVFTPEQCGAINRFVCYFTLPLFTFEFTA 60

Query: 61  HVDPFNMNYRFIGADAISKLIIVIVLAFWGMCSKKGSCFSWCITNFSLCTLTNTLVLGVP 120
           HVDPF MNYRFIGADA+SK+IIV+VLAFW  CS KGS +SW IT+FSLCTLTN+LV+GVP
Sbjct: 61  HVDPFKMNYRFIGADAVSKVIIVVVLAFWAKCSSKGS-YSWSITSFSLCTLTNSLVVGVP 119

Query: 121 LMKAMYGQMAVDLVVQSSVFQSIVWFTIFLFILEFRRAG------NALEDLEEG-HATSS 173
           ++KAMYG  AVDLVVQSSV Q+I+W T+ L +LEFRR G      N+ +DLE     T S
Sbjct: 120 IIKAMYGPAAVDLVVQSSVIQAIIWLTLLLLVLEFRRTGLGFSSNNSDKDLEGSVDNTES 179

Query: 174 SRPSFWHLMKVVWLKLAKNPNSYACVIGLAWAFVANRWHFKMPSIIEGSILIMSKAGTGT 233
           SRP+FW LM+ VW+KLA NPNSYAC+IGL WAF++NRWHF+MP+++EGSILIMSKAGTGT
Sbjct: 180 SRPAFWCLMRTVWVKLAMNPNSYACIIGLVWAFISNRWHFEMPAMMEGSILIMSKAGTGT 239

Query: 234 AMFSMGIFMALQEKLLACGPSLTAFGMVLKFIAGPAAMAIGSIATGLRGDVLRVSIIQ 291
           AMFSMGIFMALQEK+++CG SL   GM+L+FIAGPAAMAIGSIA GL+GDVLRV+IIQ
Sbjct: 240 AMFSMGIFMALQEKVISCGASLAVIGMILRFIAGPAAMAIGSIAVGLQGDVLRVAIIQ 297

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144932|ref|XP_002325466.1| auxin efflux carrier component [Populus trichocarpa] gi|222862341|gb|EEE99847.1| auxin efflux carrier component [Populus trichocarpa]

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 221/298 (74%), Positives = 248/298 (83%), Gaps = 8/298 (2%)

Query: 1   MIGWEDVYKVIVAMVPLYFALILGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTT 60
           MIGW D+YKV+VAMVPLY AL+LGYGSV+WWK+  PE+C AINR VCYFTLP FT EFT 
Sbjct: 1   MIGWADIYKVVVAMVPLYVALMLGYGSVRWWKVFTPEQCGAINRFVCYFTLPFFTFEFTA 60

Query: 61  HVDPFNMNYRFIGADAISKLIIVIVLAFWGMCSKKGSCFSWCITNFSLCTLTNTLVLGVP 120
           HVDPF MNY FIGADAISKLIIV+VLA W   S KGS + W IT+FSLCTLTN+LVLGVP
Sbjct: 61  HVDPFKMNYLFIGADAISKLIIVVVLAVWAKWSGKGS-YGWSITSFSLCTLTNSLVLGVP 119

Query: 121 LMKAMYGQMAVDLVVQSSVFQSIVWFTIFLFILEFRRAG------NALEDLE-EGHATSS 173
           L+KAMYG  AVDLVVQSSV QSI+W T+ L +LEFRR+G      N  +DLE    +T S
Sbjct: 120 LIKAMYGPTAVDLVVQSSVIQSIIWLTMLLLVLEFRRSGLGVSSSNPDKDLEGNADSTVS 179

Query: 174 SRPSFWHLMKVVWLKLAKNPNSYACVIGLAWAFVANRWHFKMPSIIEGSILIMSKAGTGT 233
           SRP+FW LMK V +KLA NPNSYAC+IGL WAF+A RW F+MPSI+EGSILIMSK GTGT
Sbjct: 180 SRPAFWCLMKTVGVKLAMNPNSYACIIGLVWAFIAKRWRFEMPSIMEGSILIMSKTGTGT 239

Query: 234 AMFSMGIFMALQEKLLACGPSLTAFGMVLKFIAGPAAMAIGSIATGLRGDVLRVSIIQ 291
           AMFSMGIFMALQEK++ACG SLT  GMVL+FIAGPAAMAIGSIA GLRGDVLRV+IIQ
Sbjct: 240 AMFSMGIFMALQEKVIACGASLTVIGMVLRFIAGPAAMAIGSIAVGLRGDVLRVAIIQ 297

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543120|ref|XP_002512623.1| conserved hypothetical protein [Ricinus communis] gi|223548584|gb|EEF50075.1| conserved hypothetical protein [Ricinus communis]

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 223/309 (72%), Positives = 251/309 (81%), Gaps = 19/309 (6%)

Query: 1   MIGWEDVYKVIVAMVPLYFALILGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTT 60
           MIGWEDVYKVIVAMVPLY AL+LGYGS++WWKI  PE+  A+NRLVCYFTLPLFT EFT 
Sbjct: 1   MIGWEDVYKVIVAMVPLYVALLLGYGSIRWWKIFTPEQGGAVNRLVCYFTLPLFTFEFTA 60

Query: 61  HVDPFNMNYRFIGADAISKLIIVIVLAFWGMCSKKGSCFSWCITNFSLCTLTNTLVLGVP 120
           HVDPF MNY FIGADAISK IIV+VLA W   S KGS ++W IT+FSL TLTN+LV+GVP
Sbjct: 61  HVDPFKMNYLFIGADAISKFIIVVVLACWAKFSSKGS-YTWSITSFSLSTLTNSLVVGVP 119

Query: 121 LMKAMYGQMAVDLVVQSSVFQSIVWFTIFLFILEFRR-------------AGNALEDLEE 167
           LMKAMYG MAVDLVVQSSV Q+I+W TI LF+LEFRR             + N  +DLE 
Sbjct: 120 LMKAMYGPMAVDLVVQSSVVQAIIWLTILLFVLEFRRTRLDISSSNYNKNSDNLEKDLEG 179

Query: 168 -----GHATSSSRPSFWHLMKVVWLKLAKNPNSYACVIGLAWAFVANRWHFKMPSIIEGS 222
                  A SSS PSFW LMKVV +KLA NPNSYAC++GL WAF+ANRWHF+MPSI+EGS
Sbjct: 180 SGSAGNMAISSSGPSFWVLMKVVGVKLAMNPNSYACILGLVWAFIANRWHFEMPSIMEGS 239

Query: 223 ILIMSKAGTGTAMFSMGIFMALQEKLLACGPSLTAFGMVLKFIAGPAAMAIGSIATGLRG 282
           ILIMSKAGTGTAMFSMGIFMA+QEK++ACG  LT  GM+L+FIAGPAAMAIGSIA GL G
Sbjct: 240 ILIMSKAGTGTAMFSMGIFMAVQEKVIACGAGLTVVGMILRFIAGPAAMAIGSIAVGLHG 299

Query: 283 DVLRVSIIQ 291
           DVLRV+IIQ
Sbjct: 300 DVLRVAIIQ 308

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449477700|ref|XP_004155098.1| PREDICTED: putative auxin efflux carrier component 8-like [Cucumis sativus]

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 214/322 (66%), Positives = 244/322 (75%), Gaps = 32/322 (9%)

Query: 1   MIGWEDVYKVIVAMVPLYFALILGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTT 60
           MIGW+DVYKV+ AM PLYFALILGYGSVKWWKI + ++C AIN+LVCYFTLPLFT +FT+
Sbjct: 1   MIGWQDVYKVVAAMAPLYFALILGYGSVKWWKIFSTQQCDAINKLVCYFTLPLFTFDFTS 60

Query: 61  HVDPFNMNYRFIGADAISKLIIVIVLAFWGMCSKKGSCFSWCITNFSLCTLTNTLVLGVP 120
           H+DPF++N+ FI ADAI KLIIV+VL FW  C+ KGS + W IT+FSL TLTN LV+GVP
Sbjct: 61  HIDPFHLNFPFIAADAIGKLIIVLVLTFWAKCTTKGS-YCWSITSFSLSTLTNALVIGVP 119

Query: 121 LMKAMYGQMAVDLVVQSSVFQSIVWFTIFLFILEFRRAGNAL------------------ 162
           L K MYGQMAVDLVVQ SV Q+IVW TI LF+LE RR G  L                  
Sbjct: 120 LAKVMYGQMAVDLVVQGSVVQAIVWLTILLFVLELRRTGLDLVAAEASSGVVSEEKTVEV 179

Query: 163 ----------EDLEEGH---ATSSSRPSFWHLMKVVWLKLAKNPNSYACVIGLAWAFVAN 209
                     ED+E      ++ S RPS   LMK VW+K+A NPNSYAC IG AWAFVA 
Sbjct: 180 GGEGEKDLEGEDMEVEEMRRSSKSHRPSLKPLMKKVWVKMAGNPNSYACTIGFAWAFVAK 239

Query: 210 RWHFKMPSIIEGSILIMSKAGTGTAMFSMGIFMALQEKLLACGPSLTAFGMVLKFIAGPA 269
           RWH +MPSI+EGSILIMSKAG GTAMF+MGIFMALQEKL+ACGP+LT  GMVLKFIAGPA
Sbjct: 240 RWHVEMPSIMEGSILIMSKAGIGTAMFNMGIFMALQEKLIACGPTLTIVGMVLKFIAGPA 299

Query: 270 AMAIGSIATGLRGDVLRVSIIQ 291
           AMAIGSIA GL GDVLRV+IIQ
Sbjct: 300 AMAIGSIAMGLHGDVLRVAIIQ 321

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449470249|ref|XP_004152830.1| PREDICTED: putative auxin efflux carrier component 8-like [Cucumis sativus]

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 215/322 (66%), Positives = 244/322 (75%), Gaps = 32/322 (9%)

Query: 1   MIGWEDVYKVIVAMVPLYFALILGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTT 60
           MIGW+DVYKV+ AM PLYFALILGYGSVKWWKI + ++C AIN+LVCYFTLPLFT +FT+
Sbjct: 1   MIGWQDVYKVVAAMAPLYFALILGYGSVKWWKIFSTQQCDAINKLVCYFTLPLFTFDFTS 60

Query: 61  HVDPFNMNYRFIGADAISKLIIVIVLAFWGMCSKKGSCFSWCITNFSLCTLTNTLVLGVP 120
           H+DPF++N+ FI ADAI KLIIV+VLAFW  C+ KGS + W IT+FSL TLTN LV+GVP
Sbjct: 61  HIDPFHLNFPFIAADAIGKLIIVLVLAFWAKCTTKGS-YCWSITSFSLSTLTNALVIGVP 119

Query: 121 LMKAMYGQMAVDLVVQSSVFQSIVWFTIFLFILEFRRAGNALEDLE-------------- 166
           L K MYGQMAVDLVVQ SV Q+IVW TI LF+LE RR G  L   E              
Sbjct: 120 LAKVMYGQMAVDLVVQGSVVQAIVWLTILLFVLELRRTGLDLVAAEASSGVVSEEKTVEV 179

Query: 167 --EGH---------------ATSSSRPSFWHLMKVVWLKLAKNPNSYACVIGLAWAFVAN 209
             EG                ++ S RPS   LMK VW+K+A NPNSYAC IG AWAFVA 
Sbjct: 180 GGEGEKDLEGEGMEVEEMRRSSKSHRPSLKPLMKKVWVKMAGNPNSYACTIGFAWAFVAK 239

Query: 210 RWHFKMPSIIEGSILIMSKAGTGTAMFSMGIFMALQEKLLACGPSLTAFGMVLKFIAGPA 269
           RWH +MPSI+EGSILIMSKAG GTAMF+MGIFMALQEKL+ACGP+LT  GMVLKFIAGPA
Sbjct: 240 RWHVEMPSIMEGSILIMSKAGIGTAMFNMGIFMALQEKLIACGPTLTIVGMVLKFIAGPA 299

Query: 270 AMAIGSIATGLRGDVLRVSIIQ 291
           AMAIGSIA GL GDVLRV+IIQ
Sbjct: 300 AMAIGSIAMGLHGDVLRVAIIQ 321

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240256298|ref|NP_197157.4| putative auxin efflux carrier component 8 [Arabidopsis thaliana] gi|42558880|sp|Q9FFD0.2|PIN8_ARATH RecName: Full=Putative auxin efflux carrier component 8; Short=AtPIN8 gi|332004922|gb|AED92305.1| putative auxin efflux carrier component 8 [Arabidopsis thaliana]

 Score =  426 bits (1094), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 211/303 (69%), Positives = 241/303 (79%), Gaps = 13/303 (4%)

Query: 1   MIGWEDVYKVIVAMVPLYFALILGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTT 60
           MI   DVYKVI AMVPLY ALILGYGSVKWW I   ++C AINRLVCYFTLPLFTIEFT 
Sbjct: 1   MINCGDVYKVIEAMVPLYVALILGYGSVKWWHIFTRDQCDAINRLVCYFTLPLFTIEFTA 60

Query: 61  HVDPFNMNYRFIGADAISKLIIVIVLAFWGMCSKKGSCFSWCITNFSLCTLTNTLVLGVP 120
           HVDPFNMNYRFI AD +SK+IIV VLA W   S KGS + W IT+FSLCTLTN+LV+GVP
Sbjct: 61  HVDPFNMNYRFIAADVLSKVIIVTVLALWAKYSNKGS-YCWSITSFSLCTLTNSLVVGVP 119

Query: 121 LMKAMYGQMAVDLVVQSSVFQSIVWFTIFLFILEFRRAG---NALEDLEEGHATSSS--- 174
           L KAMYGQ AVDLVVQSSVFQ+IVW T+ LF+LEFR+AG   N + D++  +    S   
Sbjct: 120 LAKAMYGQQAVDLVVQSSVFQAIVWLTLLLFVLEFRKAGFSSNNISDVQVDNINIESGKR 179

Query: 175 ------RPSFWHLMKVVWLKLAKNPNSYACVIGLAWAFVANRWHFKMPSIIEGSILIMSK 228
                   SF  +M +VWLKLA NPN Y+C++G+AWAF++NRWH ++P I+EGSILIMSK
Sbjct: 180 ETVVVGEKSFLEVMSLVWLKLATNPNCYSCILGIAWAFISNRWHLELPGILEGSILIMSK 239

Query: 229 AGTGTAMFSMGIFMALQEKLLACGPSLTAFGMVLKFIAGPAAMAIGSIATGLRGDVLRVS 288
           AGTGTAMF+MGIFMALQEKL+ CG SLT  GMVLKFIAGPAAMAIGSI  GL GDVLRV+
Sbjct: 240 AGTGTAMFNMGIFMALQEKLIVCGTSLTVMGMVLKFIAGPAAMAIGSIVLGLHGDVLRVA 299

Query: 289 IIQ 291
           IIQ
Sbjct: 300 IIQ 302

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357507711|ref|XP_003624144.1| Auxin Efflux Carrier [Medicago truncatula] gi|49035698|gb|AAT48629.1| putative auxin efflux carrier protein 9 [Medicago truncatula] gi|87162565|gb|ABD28360.1| Auxin Efflux Carrier [Medicago truncatula] gi|355499159|gb|AES80362.1| Auxin Efflux Carrier [Medicago truncatula]

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 205/315 (65%), Positives = 245/315 (77%), Gaps = 25/315 (7%)

Query: 1   MIGWEDVYKVIVAMVPLYFALILGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTT 60
           MIGWEDVYKVIVA+VPLYFALILGYGSV+WWKI   E+C AIN+LVCYFTLPLF  EFT 
Sbjct: 1   MIGWEDVYKVIVAVVPLYFALILGYGSVRWWKIFTREQCDAINKLVCYFTLPLFAFEFTA 60

Query: 61  HVDPFNMNYRFIGADAISKLIIVIVLAFWGMCSKKGSCFSWCITNFSLCTLTNTLVLGVP 120
           H+DPF MN+ FIGAD +SKLIIV V+A W  CS K S +SW IT+FSLCTLTN+LV+G+P
Sbjct: 61  HIDPFKMNFLFIGADTLSKLIIVAVIALWAKCSSKVS-YSWSITSFSLCTLTNSLVVGIP 119

Query: 121 LMKAMYGQMAVDLVVQSSVFQSIVWFTIFLFILEFRRAG--------------------- 159
           ++K MYG M VDLVVQ+SV Q+I+W T+ LF+LEFRR G                     
Sbjct: 120 MVKPMYGPMGVDLVVQASVVQAIIWLTLLLFVLEFRRTGIEGTITTLKPKASSISNVTCE 179

Query: 160 -NALEDLEEGHAT--SSSRPSFWHLMKVVWLKLAKNPNSYACVIGLAWAFVANRWHFKMP 216
               +D+E  +    +SSR  F  LMK VWLKL  NPNSY CVIG++WAF++NRW+ ++P
Sbjct: 180 GEESKDVEANNIVEYTSSRLPFLQLMKRVWLKLIANPNSYGCVIGISWAFISNRWNLELP 239

Query: 217 SIIEGSILIMSKAGTGTAMFSMGIFMALQEKLLACGPSLTAFGMVLKFIAGPAAMAIGSI 276
           S++EGSILIMSKAGTGTAMFSMGIFMALQEK+++CGPSLT FG+VLKFIAGPAAMAI + 
Sbjct: 240 SMVEGSILIMSKAGTGTAMFSMGIFMALQEKVISCGPSLTVFGLVLKFIAGPAAMAISAF 299

Query: 277 ATGLRGDVLRVSIIQ 291
             GLRGDVLR++IIQ
Sbjct: 300 IVGLRGDVLRIAIIQ 314

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807677|ref|XP_002871722.1| hypothetical protein ARALYDRAFT_326097 [Arabidopsis lyrata subsp. lyrata] gi|297317559|gb|EFH47981.1| hypothetical protein ARALYDRAFT_326097 [Arabidopsis lyrata subsp. lyrata]

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 211/304 (69%), Positives = 240/304 (78%), Gaps = 14/304 (4%)

Query: 1   MIGWEDVYKVIVAMVPLYFALILGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTT 60
           MI   DVYKVI AMVPLY ALILGYGSVKWW I   ++C AINRLVCYFTLPLFTIEFT 
Sbjct: 1   MISCGDVYKVIEAMVPLYVALILGYGSVKWWNIFTRDQCDAINRLVCYFTLPLFTIEFTA 60

Query: 61  HVDPFNMNYRFIGADAISKLIIVIVLAFWGMCSKKGSCFSWCITNFSLCTLTNTLVLGVP 120
           HVDPFNMNYRFI AD +SK+IIV VLAFW   S KGS + W IT+FSLCTLTN+LV+GVP
Sbjct: 61  HVDPFNMNYRFIAADVLSKVIIVTVLAFWAKYSNKGS-YCWSITSFSLCTLTNSLVVGVP 119

Query: 121 LMKAMYGQMAVDLVVQSSVFQSIVWFTIFLFILEFRRAGNALE----------DLEEGH- 169
           L KAMYGQ AVDLVVQSSVFQ+IVW T+ LF+LE R+AG++            ++E G  
Sbjct: 120 LAKAMYGQQAVDLVVQSSVFQAIVWLTLLLFVLELRKAGSSSNYSSDVKVDSINIENGKR 179

Query: 170 --ATSSSRPSFWHLMKVVWLKLAKNPNSYACVIGLAWAFVANRWHFKMPSIIEGSILIMS 227
                    SF  +M +VWLKLA NPN Y+C++G+AWA ++NRWH +MP I+EGSILIMS
Sbjct: 180 EIVVVGEEKSFLEVMSLVWLKLATNPNCYSCILGIAWALISNRWHLEMPGILEGSILIMS 239

Query: 228 KAGTGTAMFSMGIFMALQEKLLACGPSLTAFGMVLKFIAGPAAMAIGSIATGLRGDVLRV 287
           KAGTGTAMF+MGIFMALQEKL+ CG SLT  GMVLKFIAGPAAMAIGSIA GL GDVLRV
Sbjct: 240 KAGTGTAMFNMGIFMALQEKLIVCGTSLTVMGMVLKFIAGPAAMAIGSIALGLHGDVLRV 299

Query: 288 SIIQ 291
           +IIQ
Sbjct: 300 AIIQ 303

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531914|ref|XP_003534521.1| PREDICTED: putative auxin efflux carrier component 8-like [Glycine max]

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 197/329 (59%), Positives = 239/329 (72%), Gaps = 39/329 (11%)

Query: 1   MIGWEDVYKVIVAMVPLYFALILGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTT 60
           MIGWE+VYKV+VA+VPLYFAL+LGYGS+KWW I   E+C AIN+LVCYFTLPLF  EFT 
Sbjct: 1   MIGWEEVYKVVVAVVPLYFALLLGYGSLKWWNIFTREQCEAINKLVCYFTLPLFIFEFTA 60

Query: 61  HVDPFNMNYRFIGADAISKLIIVIVLAFWGMCSKKGSCFSWCITNFSLCTLTNTLVLGVP 120
           H+DPF MNY FI AD ISK II++VLA W  C+ KG+ FSW IT+FSLC LTN LV+GVP
Sbjct: 61  HIDPFKMNYSFIAADTISKFIIMVVLALWAKCTPKGT-FSWSITSFSLCNLTNALVVGVP 119

Query: 121 LMKAMYGQMAVDLVVQSSVFQSIVWFTIFLFILEFRRAGNA-----------------LE 163
           ++K MYG + VDLVVQ+SV Q+ +WF + LF+LEF R G+                  + 
Sbjct: 120 MVKPMYGALGVDLVVQASVIQATIWFPLLLFVLEFWRTGSEGTTITTTTTLKPRPKTMII 179

Query: 164 DLEEG---------------------HATSSSRPSFWHLMKVVWLKLAKNPNSYACVIGL 202
           D E G                      + +SSR  F  +MK+VW KLA NPNS+ CVIG+
Sbjct: 180 DNESGGGKDVEATTVAIDVKEEMMLEESVTSSRLPFCKVMKLVWRKLATNPNSFGCVIGI 239

Query: 203 AWAFVANRWHFKMPSIIEGSILIMSKAGTGTAMFSMGIFMALQEKLLACGPSLTAFGMVL 262
           +WAF++NRW+ +MPS++EGSI IMSKAGTGTAMFSMG FMALQEK++ACGPS+T  G+VL
Sbjct: 240 SWAFISNRWNLEMPSMLEGSIQIMSKAGTGTAMFSMGTFMALQEKVIACGPSMTIIGLVL 299

Query: 263 KFIAGPAAMAIGSIATGLRGDVLRVSIIQ 291
           KFIAGPAA AIG+I  GLRGDVLRV IIQ
Sbjct: 300 KFIAGPAATAIGAIVVGLRGDVLRVVIIQ 328

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	291
TAIR|locus:2171392	351	PIN5 "AT5G16530" [Arabidopsis	0.996	0.826	0.696	4.3e-109
TAIR|locus:2038781	616	PIN4 "AT2G01420" [Arabidopsis	0.601	0.284	0.488	2.2e-78
TAIR|locus:2013975	640	PIN3 "AT1G70940" [Arabidopsis	0.601	0.273	0.466	2e-77
TAIR|locus:2201225	619	PIN7 "AT1G23080" [Arabidopsis	0.601	0.282	0.466	1.6e-75
TAIR|locus:2175559	647	EIR1 "AT5G57090" [Arabidopsis	0.601	0.270	0.483	1.9e-75
UNIPROTKB|Q5SMQ9	595	PIN1 "Auxin efflux carrier com	0.539	0.263	0.5	2.3e-72
TAIR|locus:2035037	622	PIN1 "AT1G73590" [Arabidopsis	0.539	0.252	0.506	4.6e-70
TAIR|locus:2025312	570	PIN6 "AT1G77110" [Arabidopsis	0.591	0.301	0.427	5.3e-64
TAIR|locus:2147835	367	PIN8 "AT5G15100" [Arabidopsis	0.542	0.430	0.395	3.3e-55

TAIR|locus:2171392 PIN5 "AT5G16530" [Arabidopsis thaliana (taxid:3702)]

 Score = 1078 (384.5 bits), Expect = 4.3e-109, P = 4.3e-109
 Identities = 211/303 (69%), Positives = 241/303 (79%)

Query:     1 MIGWEDVYKVIVAMVPLYFALILGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTT 60
             MI   DVYKVI AMVPLY ALILGYGSVKWW I   ++C AINRLVCYFTLPLFTIEFT 
Sbjct:     1 MINCGDVYKVIEAMVPLYVALILGYGSVKWWHIFTRDQCDAINRLVCYFTLPLFTIEFTA 60

Query:    61 HVDPFNMNYRFIGADAISKLIIVIVLAFWGMCSKKGSCFSWCITNFSLCTLTNTLVLGVP 120
             HVDPFNMNYRFI AD +SK+IIV VLA W   S KGS + W IT+FSLCTLTN+LV+GVP
Sbjct:    61 HVDPFNMNYRFIAADVLSKVIIVTVLALWAKYSNKGS-YCWSITSFSLCTLTNSLVVGVP 119

Query:   121 LMKAMYGQMAVDLVVQSSVFQSIVWFTIFLFILEFRRAG---NALEDLEEGHATSSS--- 174
             L KAMYGQ AVDLVVQSSVFQ+IVW T+ LF+LEFR+AG   N + D++  +    S   
Sbjct:   120 LAKAMYGQQAVDLVVQSSVFQAIVWLTLLLFVLEFRKAGFSSNNISDVQVDNINIESGKR 179

Query:   175 ------RPSFWHLMKVVWLKLAKNPNSYACVIGLAWAFVANRWHFKMPSIIEGSILIMSK 228
                     SF  +M +VWLKLA NPN Y+C++G+AWAF++NRWH ++P I+EGSILIMSK
Sbjct:   180 ETVVVGEKSFLEVMSLVWLKLATNPNCYSCILGIAWAFISNRWHLELPGILEGSILIMSK 239

Query:   229 AGTGTAMFSMGIFMALQEKLLACGPSLTAFGMVLKFIAGPAAMAIGSIATGLRGDVLRVS 288
             AGTGTAMF+MGIFMALQEKL+ CG SLT  GMVLKFIAGPAAMAIGSI  GL GDVLRV+
Sbjct:   240 AGTGTAMFNMGIFMALQEKLIVCGTSLTVMGMVLKFIAGPAAMAIGSIVLGLHGDVLRVA 299

Query:   289 IIQ 291
             IIQ
Sbjct:   300 IIQ 302

GO:0005215 "transporter activity" evidence=ISS

GO:0009672 "auxin:hydrogen symporter activity" evidence=ISS

GO:0009926 "auxin polar transport" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0010252 "auxin homeostasis" evidence=IMP

GO:0080161 "auxin transmembrane transporter activity" evidence=IDA

GO:0080162 "intracellular auxin transport" evidence=IDA

GO:0009555 "pollen development" evidence=IGI;IMP

TAIR|locus:2038781 PIN4 "AT2G01420" [Arabidopsis thaliana (taxid:3702)]

 Score = 461 (167.3 bits), Expect = 2.2e-78, Sum P(2) = 2.2e-78
 Identities = 87/178 (48%), Positives = 121/178 (67%)

Query:     1 MIGWEDVYKVIVAMVPLYFALILGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTT 60
             MI W D+Y V+ A+VPLY A+IL YGSV+WWKI +P++C+ INR V  F +PL +  F +
Sbjct:     1 MITWHDLYTVLTAVVPLYVAMILAYGSVQWWKIFSPDQCSGINRFVAIFAVPLLSFHFIS 60

Query:    61 HVDPFNMNYRFIGADAISKLIIVIVLAFWGMCSKKGSCFSWCITNFSLCTLTNTLVLGVP 120
               DP+ MN+RF+ AD + K+I++++LA W   +K GS   W IT FSL TL NTLV+G+P
Sbjct:    61 TNDPYAMNFRFVAADTLQKIIMLVLLALWANLTKNGS-LEWMITIFSLSTLPNTLVMGIP 119

Query:   121 LMKAMYGQMAVDLVVQSSVFQSIVWFTIFLFILEFRRAGNALEDLEEGHATSSSRPSF 178
             L+ AMYG  A  L+VQ  V Q I+W+T+ LF+ E+R  G  L  +E+   T +S  SF
Sbjct:   120 LLIAMYGTYAGSLMVQVVVLQCIIWYTLLLFLFEYR--GAKLLIMEQFPETGASIVSF 175

GO:0005215 "transporter activity" evidence=ISS

GO:0009672 "auxin:hydrogen symporter activity" evidence=ISS

GO:0009926 "auxin polar transport" evidence=ISS;RCA;IMP

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0048364 "root development" evidence=IMP

GO:0007389 "pattern specification process" evidence=IGI;RCA

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2013975 PIN3 "AT1G70940" [Arabidopsis thaliana (taxid:3702)]

 Score = 444 (161.4 bits), Expect = 2.0e-77, Sum P(2) = 2.0e-77
 Identities = 83/178 (46%), Positives = 120/178 (67%)

Query:     1 MIGWEDVYKVIVAMVPLYFALILGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTT 60
             MI W D+Y V+ A++PLY A+IL YGSV+WWKI +P++C+ INR V  F +PL +  F +
Sbjct:     1 MISWHDLYTVLTAVIPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFIS 60

Query:    61 HVDPFNMNYRFIGADAISKLIIVIVLAFWGMCSKKGSCFSWCITNFSLCTLTNTLVLGVP 120
               +P+ MN RFI AD + K+I++ +L  W   ++ GS   W IT FSL TL NTLV+G+P
Sbjct:    61 TNNPYAMNLRFIAADTLQKIIMLSLLVLWANFTRSGS-LEWSITIFSLSTLPNTLVMGIP 119

Query:   121 LMKAMYGQMAVDLVVQSSVFQSIVWFTIFLFILEFRRAGNALEDLEEGHATSSSRPSF 178
             L+ AMYG+ +  L+VQ  V Q I+W+T+ LF+ EFR A   +  +E+   T++S  SF
Sbjct:   120 LLIAMYGEYSGSLMVQIVVLQCIIWYTLLLFLFEFRGAKMLI--MEQFPETAASIVSF 175

GO:0005215 "transporter activity" evidence=ISS

GO:0009672 "auxin:hydrogen symporter activity" evidence=ISS

GO:0009926 "auxin polar transport" evidence=ISS;RCA;IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009606 "tropism" evidence=IMP

GO:0012506 "vesicle membrane" evidence=IDA

GO:0016328 "lateral plasma membrane" evidence=IDA

GO:0007389 "pattern specification process" evidence=IGI;RCA

GO:0010082 "regulation of root meristem growth" evidence=IGI

GO:0048364 "root development" evidence=IGI;IMP

GO:0009630 "gravitropism" evidence=TAS

GO:0009986 "cell surface" evidence=IDA

GO:0048766 "root hair initiation" evidence=IMP

GO:0048767 "root hair elongation" evidence=RCA;IMP

GO:0009416 "response to light stimulus" evidence=IDA

GO:0009958 "positive gravitropism" evidence=IMP

GO:0010315 "auxin efflux" evidence=IMP

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0008356 "asymmetric cell division" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2201225 PIN7 "AT1G23080" [Arabidopsis thaliana (taxid:3702)]

 Score = 441 (160.3 bits), Expect = 1.6e-75, Sum P(2) = 1.6e-75
 Identities = 83/178 (46%), Positives = 119/178 (66%)

Query:     1 MIGWEDVYKVIVAMVPLYFALILGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTT 60
             MI W D+Y V+ A++PLY A+IL YGSV+WWKI +P++C+ INR V  F +PL +  F +
Sbjct:     1 MITWHDLYTVLTAVIPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFIS 60

Query:    61 HVDPFNMNYRFIGADAISKLIIVIVLAFWGMCSKKGSCFSWCITNFSLCTLTNTLVLGVP 120
               +P+ MN RFI AD + KLI++ +L  W   ++ GS   W IT FSL TL NTLV+G+P
Sbjct:    61 SNNPYAMNLRFIAADTLQKLIMLTLLIIWANFTRSGS-LEWSITIFSLSTLPNTLVMGIP 119

Query:   121 LMKAMYGQMAVDLVVQSSVFQSIVWFTIFLFILEFRRAGNALEDLEEGHATSSSRPSF 178
             L+ AMYG+ +  L+VQ  V Q I+W+T+ LF+ E+R  G  +  +E+   T +S  SF
Sbjct:   120 LLIAMYGEYSGSLMVQIVVLQCIIWYTLLLFLFEYR--GAKILIMEQFPETGASIVSF 175

GO:0005215 "transporter activity" evidence=ISS

GO:0009672 "auxin:hydrogen symporter activity" evidence=ISS

GO:0009926 "auxin polar transport" evidence=ISS;RCA;IMP

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009942 "longitudinal axis specification" evidence=IMP

GO:0007389 "pattern specification process" evidence=IGI;RCA

GO:0048364 "root development" evidence=IGI

GO:0005886 "plasma membrane" evidence=IDA

GO:0010329 "auxin efflux transmembrane transporter activity" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2175559 EIR1 "AT5G57090" [Arabidopsis thaliana (taxid:3702)]

 Score = 446 (162.1 bits), Expect = 1.9e-75, Sum P(2) = 1.9e-75
 Identities = 86/178 (48%), Positives = 119/178 (66%)

Query:     1 MIGWEDVYKVIVAMVPLYFALILGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTT 60
             MI  +D+Y V+ AMVPLY A+IL YGSV+WW I  P++C+ INR V  F +PL +  F +
Sbjct:     1 MITGKDMYDVLAAMVPLYVAMILAYGSVRWWGIFTPDQCSGINRFVAVFAVPLLSFHFIS 60

Query:    61 HVDPFNMNYRFIGADAISKLIIVIVLAFWGMCSKKGSCFSWCITNFSLCTLTNTLVLGVP 120
               DP+ MNY F+ AD++ K++I+  L  W   S++GS   W IT FSL TL NTLV+G+P
Sbjct:    61 SNDPYAMNYHFLAADSLQKVVILAALFLWQAFSRRGS-LEWMITLFSLSTLPNTLVMGIP 119

Query:   121 LMKAMYGQMAVDLVVQSSVFQSIVWFTIFLFILEFRRAGNALEDLEEGHATSSSRPSF 178
             L++AMYG  + +L+VQ  V QSI+W+T+ LF+ EFR  G  L   E+   T+ S  SF
Sbjct:   120 LLRAMYGDFSGNLMVQIVVLQSIIWYTLMLFLFEFR--GAKLLISEQFPETAGSITSF 175

GO:0005215 "transporter activity" evidence=ISS

GO:0009672 "auxin:hydrogen symporter activity" evidence=ISS

GO:0009926 "auxin polar transport" evidence=ISS;RCA;IMP

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0000323 "lytic vacuole" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009749 "response to glucose stimulus" evidence=IEP

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=IMP;RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0046685 "response to arsenic-containing substance" evidence=RCA

GO:0048364 "root development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=IMP

GO:0009925 "basal plasma membrane" evidence=IDA

GO:0009958 "positive gravitropism" evidence=IMP

GO:0010329 "auxin efflux transmembrane transporter activity" evidence=IDA

UNIPROTKB|Q5SMQ9 PIN1 "Auxin efflux carrier component 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 432 (157.1 bits), Expect = 2.3e-72, Sum P(2) = 2.3e-72
 Identities = 79/158 (50%), Positives = 108/158 (68%)

Query:     1 MIGWEDVYKVIVAMVPLYFALILGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTT 60
             MI   D Y V+ AMVPLY A+IL YGSVKWW+I  P++C+ INR V  F +PL +  F +
Sbjct:     1 MITAADFYHVMTAMVPLYVAMILAYGSVKWWRIFTPDQCSGINRFVALFAVPLLSFHFIS 60

Query:    61 HVDPFNMNYRFIGADAISKLIIVIVLAFWGMCSKKGSCFSWCITNFSLCTLTNTLVLGVP 120
               +P+ MN RFI AD + KL+++ +L  W   S++GS   W IT FSL TL NTLV+G+P
Sbjct:    61 TNNPYTMNLRFIAADTLQKLMVLAMLTAWSHLSRRGS-LEWTITLFSLSTLPNTLVMGIP 119

Query:   121 LMKAMYGQMAVDLVVQSSVFQSIVWFTIFLFILEFRRA 158
             L+K MYG+ +  L+VQ  V Q I+W+T+ LF+ E+R A
Sbjct:   120 LLKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGA 157

GO:0005215 "transporter activity" evidence=IMP

GO:0006810 "transport" evidence=IMP

GO:0009734 "auxin mediated signaling pathway" evidence=IMP

GO:0009921 "auxin efflux carrier complex" evidence=IMP

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS

GO:0048830 "adventitious root development" evidence=IMP

TAIR|locus:2035037 PIN1 "AT1G73590" [Arabidopsis thaliana (taxid:3702)]

 Score = 431 (156.8 bits), Expect = 4.6e-70, Sum P(2) = 4.6e-70
 Identities = 80/158 (50%), Positives = 107/158 (67%)

Query:     1 MIGWEDVYKVIVAMVPLYFALILGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTT 60
             MI   D Y V+ AMVPLY A+IL YGSVKWWKI  P++C+ INR V  F +PL +  F  
Sbjct:     1 MITAADFYHVMTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIA 60

Query:    61 HVDPFNMNYRFIGADAISKLIIVIVLAFWGMCSKKGSCFSWCITNFSLCTLTNTLVLGVP 120
               +P+ MN RF+ AD++ K+I++ +L  W   S+ GS   W IT FSL TL NTLV+G+P
Sbjct:    61 ANNPYAMNLRFLAADSLQKVIVLSLLFLWCKLSRNGS-LDWTITLFSLSTLPNTLVMGIP 119

Query:   121 LMKAMYGQMAVDLVVQSSVFQSIVWFTIFLFILEFRRA 158
             L+K MYG  + DL+VQ  V Q I+W+T+ LF+ E+R A
Sbjct:   120 LLKGMYGNFSGDLMVQIVVLQCIIWYTLMLFLFEYRGA 157

GO:0005215 "transporter activity" evidence=ISS;TAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0048367 "shoot system development" evidence=IMP

GO:0016020 "membrane" evidence=ISS

GO:0009925 "basal plasma membrane" evidence=IDA

GO:0048825 "cotyledon development" evidence=IGI

GO:0005737 "cytoplasm" evidence=IDA

GO:0045177 "apical part of cell" evidence=IDA

GO:0009640 "photomorphogenesis" evidence=RCA;TAS

GO:0009630 "gravitropism" evidence=IMP

GO:0009926 "auxin polar transport" evidence=RCA;IMP

GO:0010051 "xylem and phloem pattern formation" evidence=RCA;IMP

GO:0010338 "leaf formation" evidence=IGI

GO:0010358 "leaf shaping" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0009790 "embryo development" evidence=IMP

GO:0009908 "flower development" evidence=IMP

GO:0010229 "inflorescence development" evidence=IMP

GO:0048826 "cotyledon morphogenesis" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

GO:0009624 "response to nematode" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

GO:0048364 "root development" evidence=IMP;RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

TAIR|locus:2025312 PIN6 "AT1G77110" [Arabidopsis thaliana (taxid:3702)]

 Score = 387 (141.3 bits), Expect = 5.3e-64, Sum P(2) = 5.3e-64
 Identities = 74/173 (42%), Positives = 105/173 (60%)

Query:     1 MIGWEDVYKVIVAMVPLYFALILGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTT 60
             MI   + Y V+ AM PLYFA+ + YGSVKW KI  P +C+ INR V  F +P+ +  F +
Sbjct:     1 MITGNEFYTVMCAMAPLYFAMFVAYGSVKWCKIFTPAQCSGINRFVSVFAVPVLSFHFIS 60

Query:    61 HVDPFNMNYRFIGADAISKLIIVIVLAFWGMCSKKGSCFSWCITNFSLCTLTNTLVLGVP 120
               +P+ M+  FI AD +SK+ + ++L+ W +  K G    W IT FS+ TL NTLV+G+P
Sbjct:    61 QNNPYKMDTMFILADTLSKIFVFVLLSLWAVFFKAGG-LDWLITLFSIATLPNTLVMGIP 119

Query:   121 LMKAMYGQMAVDLVVQSSVFQSIVWFTIFLFILEFRRAGNALEDLEEGHATSS 173
             L++AMYG     L+VQ  V Q I+W+T+ LF+ E R A   +     G A  S
Sbjct:   120 LLQAMYGDYTQTLMVQLVVLQCIIWYTLLLFLFELRAARLLIRAEFPGQAAGS 172

GO:0005215 "transporter activity" evidence=ISS

GO:0009672 "auxin:hydrogen symporter activity" evidence=ISS

GO:0009926 "auxin polar transport" evidence=ISS;IMP

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0048451 "petal formation" evidence=RCA

GO:0048453 "sepal formation" evidence=RCA

TAIR|locus:2147835 PIN8 "AT5G15100" [Arabidopsis thaliana (taxid:3702)]

 Score = 349 (127.9 bits), Expect = 3.3e-55, Sum P(2) = 3.3e-55
 Identities = 64/162 (39%), Positives = 100/162 (61%)

Query:     1 MIGWEDVYKVIVAMVPLYFALILGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTT 60
             MI W D+Y V+ A VPLY ++ LG+ S +  K+ +PE+CA IN+ V  F++PL + +  +
Sbjct:     1 MISWLDIYHVVSATVPLYVSMTLGFLSARHLKLFSPEQCAGINKFVAKFSIPLLSFQIIS 60

Query:    61 HVDPFNMNYRFIGADAISKLIIVIVLA----FWGMCSKKGSCFSWCITNFSLCTLTNTLV 116
               +PF M+ + I +D + K ++V+VLA    FW     +G    W IT  S+  L NTL+
Sbjct:    61 ENNPFKMSPKLILSDILQKFLVVVVLAMVLRFWHPTGGRGGKLGWVITGLSISVLPNTLI 120

Query:   117 LGVPLMKAMYGQMAVDLVVQSSVFQSIVWFTIFLFILEFRRA 158
             LG+P++ A+YG  A  ++ Q  V QS++W+TI LF+ E   A
Sbjct:   121 LGMPILSAIYGDEAASILEQIVVLQSLIWYTILLFLFELNAA 162

GO:0005215 "transporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0009672 "auxin:hydrogen symporter activity" evidence=ISS

GO:0009926 "auxin polar transport" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009555 "pollen development" evidence=IGI;IMP

GO:0010252 "auxin homeostasis" evidence=IMP

GO:0010315 "auxin efflux" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5JLM1	PIN6_ORYSJ	No assigned EC number	0.5796	1.0	0.8016	yes	no
Q9FFD0	PIN8_ARATH	No assigned EC number	0.6963	0.9965	0.8262	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00025108001 SubName- Full=Chromosome chr4 scaffold_32, whole genome shotgun sequence; (356 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	291
pfam03547	321	pfam03547, Mem_trans, Membrane transport protein	3e-52
TIGR00946	321	TIGR00946, 2a69, he Auxin Efflux Carrier (AEC) Fam	3e-38
COG0679	311	COG0679, COG0679, Predicted permeases [General fun	5e-09

>gnl|CDD|217608 pfam03547, Mem_trans, Membrane transport protein

 Score =  173 bits (440), Expect = 3e-52
 Identities = 81/283 (28%), Positives = 131/283 (46%), Gaps = 6/283 (2%)

Query: 10  VIVAMVPLYFALILGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTTHVDPFNMNY 69
           V+ A++P++  ++LGY + K   I+ P++ + IN+LV YF LPL      +      M  
Sbjct: 2   VVEAVLPVFLIMLLGYLAGKS-GILPPDQASGINKLVVYFALPLLIFSSISTNVTLEMIV 60

Query: 70  RFIGADAISKLIIVIVLAFWGMCSKK-GSCFSWCITNFSLCTLTNTLVLGVPLMKAMYGQ 128
            F     +  LI+ I L    + SK       W           NT  LG+PL+ A+YG+
Sbjct: 61  DFWLIPVLVVLIVAISLIIGFLVSKIFKLPLEWRGVLILTSAFPNTGFLGLPLLLALYGE 120

Query: 129 MAVDLVVQSSVFQSIVWFTIFLFILEFRRAGNALEDLEEGHATSSSRPSFWHLMKVVWLK 188
             +   + S V   I+ +T+  F++E R A     +     + S +         VV LK
Sbjct: 121 EGLSYAIISVVLGVIIIWTLGYFLIESRGAKRDKSEESGDTSGSMTLLIL----IVVLLK 176

Query: 189 LAKNPNSYACVIGLAWAFVANRWHFKMPSIIEGSILIMSKAGTGTAMFSMGIFMALQEKL 248
           L  NP +YA ++GL    V        P  I+ SI I+  A    A+FS+G+ +AL +  
Sbjct: 177 LILNPPTYASLLGLILGLVGFLLPLIFPEFIQDSISILGDAAIPMALFSLGLTLALGKLK 236

Query: 249 LACGPSLTAFGMVLKFIAGPAAMAIGSIATGLRGDVLRVSIIQ 291
            + G +     ++L+ I  P  M    +  GLRG  L V+I++
Sbjct: 237 SSLGAATATIHLILRLILMPLVMLGIVLLLGLRGLTLLVAILE 279

This family includes auxin efflux carrier proteins and other transporter proteins from all domains of life. Length = 321

>gnl|CDD|233203 TIGR00946, 2a69, he Auxin Efflux Carrier (AEC) Family

 Score =  136 bits (345), Expect = 3e-38
 Identities = 85/310 (27%), Positives = 129/310 (41%), Gaps = 54/310 (17%)

Query: 1   MIGWEDVYKVIVAMVPLYFALILGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTT 60
           MI +  +  V+  +V +    ILG    K + I+  E  + INR V  F LPL       
Sbjct: 1   MITYVILETVLPILVVILLGYILG----KRFGILDEEHASGINRFVINFALPLTIFHSI- 55

Query: 61  HVDPFNMNYRFIGADAISKLIIVIVLAFWGMCSKKGSCFSWCITNFSLCTLTNTLVLGVP 120
                        AD + K    +VL  WG  S   +   W IT               P
Sbjct: 56  ---------STTLADILQKSQSPVVLFLWGAFSGSYA-LIWLIT--------------KP 91

Query: 121 LMKAMYGQMAVDLVVQSSVFQSIVWFTIFLFILEFRRA-----------GNALEDL---- 165
           L KA YG+++  L+V +    + + + + L +     A           G  L  +    
Sbjct: 92  LFKADYGKLSGFLLVSALPNTAFIGYPLLLSLFGEEGAKILIAALFIDTGAVLMTIALGL 151

Query: 166 ----EEGHATSSSRPSFWHLMKVVWLKLAKNPNSYACVIGLAWAFVANRWHFKMPSIIEG 221
               E+G     S  S   ++  VW KL K P  +A ++ +  + V     FKMP +I  
Sbjct: 152 FLVSEDGAGGEGSGESTRLMLIFVWKKLIKFPPLWAPLLSVILSLVG----FKMPGLILK 207

Query: 222 SILIMSKAGTGTAMFSMGIFMALQEKLLACGPSLTAFGMVLKFIAGPAAMAIGSIATGLR 281
           SI I+S A T  A+FS+G  +AL  + +  G       ++++F+  PA MA  S   GLR
Sbjct: 208 SISILSGATTPMALFSLG--LALSPRKIKLGVRDAILALIVRFLVQPAVMAGISKLIGLR 265

Query: 282 GDVLRVSIIQ 291
           G  L V+I+Q
Sbjct: 266 GLELSVAILQ 275

[Transport and binding proteins, Other]. Length = 321

>gnl|CDD|223751 COG0679, COG0679, Predicted permeases [General function prediction only]

 Score = 55.8 bits (135), Expect = 5e-09
 Identities = 58/288 (20%), Positives = 116/288 (40%), Gaps = 36/288 (12%)

Query: 10  VIVAMVPLYFALILGYGSVKWWKIIAPEECAAINRLVCYFTLP--LFTIEFTTHVDPFNM 67
           V   ++P++  ++LGY   ++  I+  E    ++RLV Y  LP  LF    T  +     
Sbjct: 5   VFEVVLPIFLIILLGYLLKRFG-ILDEEAARGLSRLVVYVALPALLFNSIATADLS-GLA 62

Query: 68  NYRFIGADAISKLIIVIVLAFWGMCSKKGSCFSWCITNFSLCTLT----NTLVLGVPLMK 123
           +   I A  ++ L+   +LA  G        F        +  L     N   LG+P+  
Sbjct: 63  DLGLIVASLVATLLAFFLLALIGR-----FLFKLDKRETVIFALASAFPNIGFLGLPVAL 117

Query: 124 AMYGQMAVDLVVQSSVFQSIVWFTIFLFILEFRRAGNALEDLEEGHATSSSRPSFWHLMK 183
           +++G+  +   V   +    + FT+ + +L                    +  S   ++K
Sbjct: 118 SLFGEKGLAYAVIFLIIGLFLMFTLGVILLARSG--------------GGTNKSLLSVLK 163

Query: 184 VVWLKLAKNPNSYACVIGLAWAFVANRWHFKMPSIIEGSILIMSKAGTGTAMFSMGIFMA 243
               KL  NP   A ++GL            +P+ ++ ++ +++ A +  A+ ++G+ +A
Sbjct: 164 ----KLLTNPLIIALILGLLLNL----LGISLPAPLDTAVDLLASAASPLALIALGLSLA 215

Query: 244 LQEKLLACGPSLTAFGMVLKFIAGPAAMAIGSIATGLRGDVLRVSIIQ 291
              KL    P +    + LK +  P    + +   GL G  L+V ++ 
Sbjct: 216 -FLKLKGSKPPIILIALSLKLLLAPLVALLVAKLLGLSGLALQVLVLL 262

Length = 311

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	291
TIGR00946	321	2a69 he Auxin Efflux Carrier (AEC) Family.	100.0
PRK09903	314	putative transporter YfdV; Provisional	100.0
COG0679	311	Predicted permeases [General function prediction o	100.0
PF03547	385	Mem_trans: Membrane transport protein; InterPro: I	100.0
KOG2722	408	consensus Predicted membrane protein [Function unk	99.89
COG3329	372	Predicted permease [General function prediction on	97.62
PF05982	327	DUF897: Domain of unknown function (DUF897) ; Inte	97.57
PF05684	378	DUF819: Protein of unknown function (DUF819); Inte	96.82
TIGR00841	286	bass bile acid transporter. Functionally character	96.08
TIGR00841	286	bass bile acid transporter. Functionally character	96.03
TIGR00832	328	acr3 arsenical-resistance protein. The first prote	95.97
COG0385	319	Predicted Na+-dependent transporter [General funct	95.87
COG1346	230	LrgB Putative effector of murein hydrolase [Cell e	93.55
TIGR00783	347	ccs citrate carrier protein, CCS family. These pro	92.91
PF03601	305	Cons_hypoth698: Conserved hypothetical protein 698	92.78
PRK10711	231	hypothetical protein; Provisional	92.2
PF04172	215	LrgB: LrgB-like family ; InterPro: IPR007300 The t	91.82
PF01758	187	SBF: Sodium Bile acid symporter family; InterPro:	91.81
PRK04288	232	antiholin-like protein LrgB; Provisional	91.27
PF03390	414	2HCT: 2-hydroxycarboxylate transporter family; Int	90.61
TIGR00659	226	conserved hypothetical protein TIGR00659. Members	90.54
COG0385	319	Predicted Na+-dependent transporter [General funct	89.26
PF13593	313	DUF4137: SBF-like CPA transporter family (DUF4137)	88.69
TIGR00783	347	ccs citrate carrier protein, CCS family. These pro	87.54
PF03601	305	Cons_hypoth698: Conserved hypothetical protein 698	86.69
PF13593	313	DUF4137: SBF-like CPA transporter family (DUF4137)	85.53

>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family

Probab=100.00  E-value=1.1e-38  Score=290.85  Aligned_cols=267  Identities=25%  Similarity=0.326  Sum_probs=213.0

Q ss_pred             CccHHHHHHHHHHHHHHHHHHHHhHhh-hhhccccChhhhHHHHHHHHHHHhHHHHHHHhccCCCC--Cc-chhHHHHHH
Q 041301            1 MIGWEDVYKVIVAMVPLYFALILGYGS-VKWWKIIAPEECAAINRLVCYFTLPLFTIEFTTHVDPF--NM-NYRFIGADA   76 (291)
Q Consensus         1 ~~~~~~~~~vl~~vl~i~~li~iG~~~-~r~~~~~~~~~~~~l~~lv~~v~lP~lif~~l~~~~~~--~~-~~~~l~~~~   76 (291)
                      |+.|+    +++.++|+++++++||++ +| +|++++++.+.++++++|+++||++|.++.+.+.+  +. .+.......
T Consensus         1 ~~~~~----~~~~ilpv~~ii~lG~~~~~r-~~~~~~~~~~~l~~~v~~i~lP~lif~~~~~~~~~~~~~~~~~~~~~~~   75 (321)
T TIGR00946         1 MITYV----ILETVLPILVVILLGYILGKR-FGILDEEHASGINRFVINFALPLTIFHSISTTLADILQKSQSPVVLFLW   75 (321)
T ss_pred             CccHH----HHHHHHHHHHHHHHHHHHHHH-hCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45554    457899999999999999 56 79999999999999999999999999999987664  22 334333333


Q ss_pred             HHHHHHHHHHHHHHH-hhcCCccchhhhhhhhhccccccccchHHHHHHhhcccc---hhHHHHHHHHHHHHHHHHHHHH
Q 041301           77 ISKLIIVIVLAFWGM-CSKKGSCFSWCITNFSLCTLTNTLVLGVPLMKAMYGQMA---VDLVVQSSVFQSIVWFTIFLFI  152 (291)
Q Consensus        77 ~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~N~~~~g~Pi~~~l~G~~~---~~~~~~~~~~~~~~~~~~~~~~  152 (291)
                      .+....+++++..+| ..+++ ++++.... .+++++|++|+|+|+++++|||++   ..++..++..+.+..|++++.+
T Consensus        76 ~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~-~~~~~~N~~~~GlPl~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (321)
T TIGR00946        76 GAFSGSYALIWLITKPLFKAD-YGKLSGFL-LVSALPNTAFIGYPLLLSLFGEEGAKILIAALFIDTGAVLMTIALGLFL  153 (321)
T ss_pred             HHHHHHHHHHHHHHHHHHhcc-cchhhHHH-HHhhhccceeehHHHHHHHhcccchhhhHHHHHHHhccchhHHHHHHHH
Confidence            445556777777777 44444 33433333 338999999999999999999999   6777878888889999999876


Q ss_pred             HHhhhccCcccccccCCCCCCCCChhHHHHHHHHHHHhhchhHHHHHHHHHHHHhhhccCCCcChhHHHHHHHhhhhhhH
Q 041301          153 LEFRRAGNALEDLEEGHATSSSRPSFWHLMKVVWLKLAKNPNSYACVIGLAWAFVANRWHFKMPSIIEGSILIMSKAGTG  232 (291)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~nP~~ia~i~gli~~~~~~~~~~~~P~~i~~~l~~l~~~~~p  232 (291)
                      .+...+++++           ++.+.++..++.++++++||+++|+++|++++.+    |+++|+++.++++.+|++++|
T Consensus       154 ~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~nP~iia~i~Gl~~~~~----~i~lP~~l~~~l~~lg~~~~p  218 (321)
T TIGR00946       154 VSEDGAGGEG-----------SGESTRLMLIFVWKKLIKFPPLWAPLLSVILSLV----GFKMPGLILKSISILSGATTP  218 (321)
T ss_pred             hccccccccc-----------cchhHHHHHHHHHHHHHhCCChHHHHHHHHHHHH----hhcCcHHHHHHHHHHHHHHHH
Confidence            6432110000           0112233456778999999999999999999999    999999999999999999999


Q ss_pred             HHHHHHhHHhhhhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHhCCCccchhccccC
Q 041301          233 TAMFSMGIFMALQEKLLACGPSLTAFGMVLKFIAGPAAMAIGSIATGLRGDVLRVSIIQ  291 (291)
Q Consensus       233 laL~~lG~~L~~~~~~~~~~~~~~~~~~~~kli~~Pli~~~~~~~~~l~~~~~~~~vl~  291 (291)
                      ++|+++|++++.++  .+++++..+..++.|+++.|+++++++.+++++++..+++++|
T Consensus       219 laLl~lG~~l~~~~--~~~~~~~~~~~~~~klil~P~i~~~~~~~~~l~~~~~~~~vl~  275 (321)
T TIGR00946       219 MALFSLGLALSPRK--IKLGVRDAILALIVRFLVQPAVMAGISKLIGLRGLELSVAILQ  275 (321)
T ss_pred             HHHHHHHHhhChhh--hccChHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence            99999999997544  4456788899999999999999999999999999999988764

>PRK09903 putative transporter YfdV; Provisional

Probab=100.00  E-value=4.5e-38  Score=285.82  Aligned_cols=256  Identities=19%  Similarity=0.290  Sum_probs=203.7

Q ss_pred             HHHHHHHHHHHHHHHhHhhhhhccccChhhhHHHHHHHHHHHhHHHHHHHhccCCCCCc--chhHHHHHHHHHHHHHHHH
Q 041301            9 KVIVAMVPLYFALILGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTTHVDPFNM--NYRFIGADAISKLIIVIVL   86 (291)
Q Consensus         9 ~vl~~vl~i~~li~iG~~~~r~~~~~~~~~~~~l~~lv~~v~lP~lif~~l~~~~~~~~--~~~~l~~~~~~~~i~~~~~   86 (291)
                      ..++.++|+++++++||+++| +|.++|++.+.+|++++|+++||++|.++.+.+.++.  ++.......++.+..++++
T Consensus         4 ~~~~~ilpif~ii~lG~~~~r-~~~~~~~~~~~ls~lv~~v~lPalif~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (314)
T PRK09903          4 FFIGDLLPIIVIMLLGYFSGR-RETFSEDQARAFNKLVLNYALPAALFVSITRANREMIFADTRLTLVSLVVIVGCFFFS   82 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            467889999999999999976 7999999999999999999999999999998865432  4555544445555566666


Q ss_pred             HHHHH-hhcCCccchhhhhhhhhccccccccchHHHHHHhhccc---chhHHHHHHHHHHHHHHHHHHHHHHhhhccCcc
Q 041301           87 AFWGM-CSKKGSCFSWCITNFSLCTLTNTLVLGVPLMKAMYGQM---AVDLVVQSSVFQSIVWFTIFLFILEFRRAGNAL  162 (291)
Q Consensus        87 ~~~~~-~~~~~~~~~~~~~~~~~~~~~N~~~~g~Pi~~~l~G~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (291)
                      +..++ ..+++ +.+.....+. ++++|+||+|+|+++++||++   ++.++..+ ..++.+.|++++..++..++++  
T Consensus        83 ~~~~~~~~~~~-~~~~~~~~~~-~~~~N~gf~G~Pl~~~~~G~~~~~~~~~a~~~-~~~~~~~~~~g~~~~~~~~~~~--  157 (314)
T PRK09903         83 WFGCYKFFKRT-HAEAAVCALI-AGSPTIGFLGFAVLDPIYGDSVSTGLVVAIIS-IIVNAITIPIGLYLLNPSSGAD--  157 (314)
T ss_pred             HHHHHHHhcCC-cchhhHhhhh-hcCCCcccccHHHHHHHcCchhhhhhHHHHHH-HHHHHHHHHHHHHHHccccccc--
Confidence            66665 33443 3333333344 788999999999999999999   55555544 4577889999999887533210  


Q ss_pred             cccccCCCCCCCCChhHHHHHHHHHHHhhchhHHHHHHHHHHHHhhhccCCCcChhHHHHHHHhhhhhhHHHHHHHhHHh
Q 041301          163 EDLEEGHATSSSRPSFWHLMKVVWLKLAKNPNSYACVIGLAWAFVANRWHFKMPSIIEGSILIMSKAGTGTAMFSMGIFM  242 (291)
Q Consensus       163 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~nP~~ia~i~gli~~~~~~~~~~~~P~~i~~~l~~l~~~~~plaL~~lG~~L  242 (291)
                                 ++.+   ..++.+++++|||+++|+++|++++++    |+++|+++.++++++|++++|++|+++|+++
T Consensus       158 -----------~~~~---~~~~~l~~~~~nP~iia~~~gl~~~l~----~i~lP~~i~~~l~~lg~~~~PlaL~~iG~~L  219 (314)
T PRK09903        158 -----------GKKN---SNLSALISAAKEPVVWAPVLATILVLV----GVKIPAAWDPTFNLIAKANSGVAVFAAGLTL  219 (314)
T ss_pred             -----------cccc---hHHHHHHHHHhchHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       0111   134678889999999999999999999    9999999999999999999999999999999


Q ss_pred             hhhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHhCCCccchhccccC
Q 041301          243 ALQEKLLACGPSLTAFGMVLKFIAGPAAMAIGSIATGLRGDVLRVSIIQ  291 (291)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~kli~~Pli~~~~~~~~~l~~~~~~~~vl~  291 (291)
                      +..+  .+. .++.+..++.|+++.|+++++++.++|+|+.+.+++++|
T Consensus       220 ~~~~--~~~-~~~~~~~~~~Kli~~P~i~~~~~~~~~l~~~~~~v~vl~  265 (314)
T PRK09903        220 AAHK--FEF-SAEIAYNTFLKLILMPLALLLVGMACHLNSEHLQMMVLA  265 (314)
T ss_pred             hhcc--ccc-cHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence            8654  222 356788899999999999999999999999999998875

>COG0679 Predicted permeases [General function prediction only]

Probab=100.00  E-value=4e-37  Score=278.78  Aligned_cols=260  Identities=21%  Similarity=0.365  Sum_probs=218.9

Q ss_pred             HHHHHHHHHHHHHHHHHhHhhhhhccccChhhhHHHHHHHHHHHhHHHHHHHhccCCCCCc-chhHHHHHHHHHHHHHHH
Q 041301            7 VYKVIVAMVPLYFALILGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTTHVDPFNM-NYRFIGADAISKLIIVIV   85 (291)
Q Consensus         7 ~~~vl~~vl~i~~li~iG~~~~r~~~~~~~~~~~~l~~lv~~v~lP~lif~~l~~~~~~~~-~~~~l~~~~~~~~i~~~~   85 (291)
                      +..++..++|+++++++||+++| .+.++++..+.+|++++|+++||++|+++.+.+.++. ++..+.....+.+..++.
T Consensus         2 ~~~~~~~vlpi~lii~lGy~~~r-~~~~~~~~~~~ls~lv~~~~lP~LlF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (311)
T COG0679           2 MMIVFEVVLPIFLIILLGYLLKR-FGILDEEAARGLSRLVVYVALPALLFNSIATADLSGLADLGLIVASLVATLLAFFL   80 (311)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHH-hcccCHHHHHHHHHHHHHHHhHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHHHH
Confidence            45678999999999999999976 7999999999999999999999999999999988765 677666666677777777


Q ss_pred             HHHHHHhhcCCccchhhhhhhhhccccccccchHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhccCccccc
Q 041301           86 LAFWGMCSKKGSCFSWCITNFSLCTLTNTLVLGVPLMKAMYGQMAVDLVVQSSVFQSIVWFTIFLFILEFRRAGNALEDL  165 (291)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~g~Pi~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (291)
                      .+..+|+.+++++++..... .++.++|++++|+|+....|||+++.++++++..+++..++++.+.++..+++      
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~-~~~~~~N~g~lg~pi~~~~~G~~gl~~~~i~~~~~~~~~~~~g~~~l~~~~~~------  153 (311)
T COG0679          81 LALIGRFLFKLDKRETVIFA-LASAFPNIGFLGLPVALSLFGEKGLAYAVIFLIIGLFLMFTLGVILLARSGGG------  153 (311)
T ss_pred             HHHHHHHHhccchhhHHHHH-HHHHhcccchhhHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------
Confidence            77777654433233222332 33899999999999999999999999999999999999999999999865542      


Q ss_pred             ccCCCCCCCCChhHHHHHHHHHHHhhchhHHHHHHHHHHHHhhhccCCCcChhHHHHHHHhhhhhhHHHHHHHhHHhhhh
Q 041301          166 EEGHATSSSRPSFWHLMKVVWLKLAKNPNSYACVIGLAWAFVANRWHFKMPSIIEGSILIMSKAGTGTAMFSMGIFMALQ  245 (291)
Q Consensus       166 ~~~~~~s~~~~~~~~~~~~~~~~~~~nP~~ia~i~gli~~~~~~~~~~~~P~~i~~~l~~l~~~~~plaL~~lG~~L~~~  245 (291)
                               +.   +..++..|++++||+++|.++|++++..    ++++|+++.++.+++|++++|++|+++|++|+..
T Consensus       154 ---------~~---~~~~~~~~~~~~nP~i~a~i~g~~~~~~----~i~lP~~~~~~~~~l~~a~~pl~li~lG~~L~~~  217 (311)
T COG0679         154 ---------TN---KSLLSVLKKLLTNPLIIALILGLLLNLL----GISLPAPLDTAVDLLASAASPLALIALGLSLAFL  217 (311)
T ss_pred             ---------ch---hHHHHHHHHHHhCcHHHHHHHHHHHHHc----CCCCcHHHHHHHHHHHHhhhhHHHHHHhhhcchh
Confidence                     11   2367788999999999999999999999    9999999999999999999999999999999864


Q ss_pred             hhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHhCCCccchhccccC
Q 041301          246 EKLLACGPSLTAFGMVLKFIAGPAAMAIGSIATGLRGDVLRVSIIQ  291 (291)
Q Consensus       246 ~~~~~~~~~~~~~~~~~kli~~Pli~~~~~~~~~l~~~~~~~~vl~  291 (291)
                      + ..+...+........|++++|++++...+.+|++++..++++++
T Consensus       218 ~-~~~~~~~~~~~~~~~kll~~Pl~~~~~~~~~~l~~~~~~v~vl~  262 (311)
T COG0679         218 K-LKGSKPPIILIALSLKLLLAPLVALLVAKLLGLSGLALQVLVLL  262 (311)
T ss_pred             h-hccccchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence            3 22233455556666699999999999999999999999888764

>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea

Probab=100.00  E-value=2.2e-35  Score=275.34  Aligned_cols=279  Identities=24%  Similarity=0.321  Sum_probs=209.8

Q ss_pred             HHHHHHHHHHHHHHhHhhhhhccccChhhhHHHHHHHHHHHhHHHHHHHhccCC-CCCc-chhHHHHH-HHHHHHHHHHH
Q 041301           10 VIVAMVPLYFALILGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTTHVD-PFNM-NYRFIGAD-AISKLIIVIVL   86 (291)
Q Consensus        10 vl~~vl~i~~li~iG~~~~r~~~~~~~~~~~~l~~lv~~v~lP~lif~~l~~~~-~~~~-~~~~l~~~-~~~~~i~~~~~   86 (291)
                      ++++++|+++++++||+++| +|++++++.+.++++++|+++||++|.++++.+ .++. +++++... .+...+.++++
T Consensus         2 v~~~i~~i~~ii~~G~~~~~-~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (385)
T PF03547_consen    2 VFSAILPIFLIILLGYLLGR-FGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLSLWFIPVFAFIIFILGLLLG   80 (385)
T ss_pred             cHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999977 699999999999999999999999999999874 3333 55544332 33344455556


Q ss_pred             HHHHHhhcCCccchhhhhhhhhccccccccchHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcc----
Q 041301           87 AFWGMCSKKGSCFSWCITNFSLCTLTNTLVLGVPLMKAMYGQMAVDLVVQSSVFQSIVWFTIFLFILEFRRAGNAL----  162 (291)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~g~Pi~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  162 (291)
                      +.+.|+.+.+ +.++... ..+++++|++++|+|+++++||+++..|+.++++++.+..|+++..+++..++++++    
T Consensus        81 ~~~~~~~~~~-~~~~~~~-~~~~~~~N~~~lglpi~~~l~g~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~  158 (385)
T PF03547_consen   81 FLLSRLFRLP-KEWRGVF-VLAASFGNTGFLGLPILQALFGERGVAYAIIFDVVNNIILWSLGYFLLESRSEKEDKSEEE  158 (385)
T ss_pred             HHHHHhcCCC-cccceEE-EecccCCcchhhHHHHHHHHhcchhhhhehHHHHhhHHHHHHHHHHhhccccccccccccc
Confidence            6666755444 2222222 244899999999999999999999999999999999999999999999865432100    


Q ss_pred             c-----------cc-----ccCC----------CC--------CC-------C----C-----------ChhHHHHHHHH
Q 041301          163 E-----------DL-----EEGH----------AT--------SS-------S----R-----------PSFWHLMKVVW  186 (291)
Q Consensus       163 ~-----------~~-----~~~~----------~~--------s~-------~----~-----------~~~~~~~~~~~  186 (291)
                      +           |.     |+++          ++        ++       +    +           ...++..++.+
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (385)
T PF03547_consen  159 PSSAESIDSEQEDSDEMSLDGSSPSSTEEEIDEDGSPSSTPSQSSASAPSSVSTSPSPSNSTGAEQKSSNSTRKKLKKSI  238 (385)
T ss_pred             ccccccccccccCCccccCCcccccccccccccCCcccccccccccccchhhccCCcccccchhhhhhhhhHHHHHHHHH
Confidence            0           00     0000          00        00       0    0           01123345677


Q ss_pred             HHHhhchhHHHHHHHHHHHHhhhccCCCcChhHHHHHHHhhhhhhHHHHHHHhHHhhhhhhhhhcCchHHHHHHHHHHHH
Q 041301          187 LKLAKNPNSYACVIGLAWAFVANRWHFKMPSIIEGSILIMSKAGTGTAMFSMGIFMALQEKLLACGPSLTAFGMVLKFIA  266 (291)
Q Consensus       187 ~~~~~nP~~ia~i~gli~~~~~~~~~~~~P~~i~~~l~~l~~~~~plaL~~lG~~L~~~~~~~~~~~~~~~~~~~~kli~  266 (291)
                      ++.++||+++|.++|+++++.+......+|+++.++++++|++++|++|+++|++++..++....+++.....++.|+++
T Consensus       239 ~~~~~nP~~~a~~lgli~~~~~~~~~~~~~~~i~~~~~~lg~~~~pl~l~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii  318 (385)
T PF03547_consen  239 LKLFKNPPLIAIILGLIIGLIPPLRPLFFPSFITDSLSYLGAAAVPLALFVLGASLARGPRKSALGWKPSIIAVLVRLII  318 (385)
T ss_pred             HHHHhCcHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHH
Confidence            88899999999999999999933333334499999999999999999999999999865432234566666789999999


Q ss_pred             HHHHHHHHHHHhCCCccchhccccC
Q 041301          267 GPAAMAIGSIATGLRGDVLRVSIIQ  291 (291)
Q Consensus       267 ~Pli~~~~~~~~~l~~~~~~~~vl~  291 (291)
                      .|++++++++.++++++..++.++|
T Consensus       319 ~P~i~~~~~~~~~l~~~~~~~~~~~  343 (385)
T PF03547_consen  319 LPLIGIGIVFLLGLDGDMARVLILQ  343 (385)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            9999999999999999888877654

Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane

>KOG2722 consensus Predicted membrane protein [Function unknown]

Probab=99.89  E-value=3.8e-24  Score=189.97  Aligned_cols=272  Identities=14%  Similarity=0.148  Sum_probs=195.0

Q ss_pred             ccHHHHHHHHH---HHHHHHHHHHHhHhhhhh-ccccChhhhHHHHHHHHHHHhHHHHHHHhccC-CCCCc-chhHHHHH
Q 041301            2 IGWEDVYKVIV---AMVPLYFALILGYGSVKW-WKIIAPEECAAINRLVCYFTLPLFTIEFTTHV-DPFNM-NYRFIGAD   75 (291)
Q Consensus         2 ~~~~~~~~vl~---~vl~i~~li~iG~~~~r~-~~~~~~~~~~~l~~lv~~v~lP~lif~~l~~~-~~~~~-~~~~l~~~   75 (291)
                      ..+-++.++.+   .++.++++..+||+++++ .++++++.+|.+|+++++++.||++|..++++ +.+++ +||++...
T Consensus         2 mgf~s~~~vas~v~pvlqvl~i~~~G~~lA~~~~~lLp~dark~ln~Lvf~lFtPcLiFs~La~svtl~~ii~~wfiPVn   81 (408)
T KOG2722|consen    2 MGFLSLLEVASGVMPVLQVLLITLVGFLLASDYVNLLPRDARKLLNKLVFYLFTPCLIFSKLAQSVTLEKIIQWWFIPVN   81 (408)
T ss_pred             chHHHHHHHhcccccHHHHHHHHHHHHHHhccccCcCCHHHHHHhhheeeeeecHHHHHHHHhhhccHHHHHHHHhhHHH
Confidence            33444444444   678889999999999852 38999999999999999999999999999987 77775 89988664


Q ss_pred             -HHHHHHHHHHHHHHHHhhcCCccchhhhhhhhhccccccccchHHHHHHhhcc-------------cchhHHHHHHHHH
Q 041301           76 -AISKLIIVIVLAFWGMCSKKGSCFSWCITNFSLCTLTNTLVLGVPLMKAMYGQ-------------MAVDLVVQSSVFQ  141 (291)
Q Consensus        76 -~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~g~Pi~~~l~G~-------------~~~~~~~~~~~~~  141 (291)
                       .+...+..+++|+..++.+.+++.+..+  ..+|+++|.|++.+.++.++..+             .|+.|+.+.....
T Consensus        82 v~Lt~~ig~liG~lv~~I~rppp~~~~fi--ia~~a~GN~gnlpL~Lv~alc~~~~~Pfg~~~~c~s~Gi~Y~sf~~~lg  159 (408)
T KOG2722|consen   82 VGLTFIIGSLIGWLVVKILRPPPQLRGFI--IACCAFGNSGNLPLILVPALCDEDGIPFGNREKCASRGISYVSFSQQLG  159 (408)
T ss_pred             HHHHHHHHHHHHHHHhheecCChhhcCeE--EEEeecCCcCCcHHHHhHHHhcccCCCCCChhhhhhcchhHHHHHHHhh
Confidence             3556677778888888876653433332  34599999999999999999633             2789999999888


Q ss_pred             HHHHHHHHHHHHHhhhccC----ccccc------------ccCCCC------------------CCC-CChh---HHHHH
Q 041301          142 SIVWFTIFLFILEFRRAGN----ALEDL------------EEGHAT------------------SSS-RPSF---WHLMK  183 (291)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~----~~~~~------------~~~~~~------------------s~~-~~~~---~~~~~  183 (291)
                      .+..|++++-++.......    +++++            |.|+|+                  +++ +.++   .-..+
T Consensus       160 ~il~wty~Y~~~~~p~~~~~~~~~~~~Ve~~~~~~~~~s~e~~~~~~~k~~ll~~~en~~~~~~g~~~~~~~~~~~~~~~  239 (408)
T KOG2722|consen  160 QILRWTYVYRMLLPPNLELMSALKESPVEALLESVPQPSVESDEDSTCKTLLLASKENRNNQVVGREGKVKRRSVSLSEK  239 (408)
T ss_pred             hhEEEEEEeeeecCCchhhhhcCChhhhhhhhhccCCCCcccccccccccccccccccCCCceeeccccceEEEeehhHH
Confidence            8999998887554321100    00000            111110                  010 1110   11123


Q ss_pred             HHHHHHhhchhHHHHHHHHHHHHhhhc----cCCCcC-hhHHHHHHHhhhhhhHHHHHHHhHHhhhhhhhhhcCchHHHH
Q 041301          184 VVWLKLAKNPNSYACVIGLAWAFVANR----WHFKMP-SIIEGSILIMSKAGTGTAMFSMGIFMALQEKLLACGPSLTAF  258 (291)
Q Consensus       184 ~~~~~~~~nP~~ia~i~gli~~~~~~~----~~~~~P-~~i~~~l~~l~~~~~plaL~~lG~~L~~~~~~~~~~~~~~~~  258 (291)
                      ..+++++ +|+++|.++|+++...++.    ++-.-| +++.++.+.+|+.++|+.++++|..|....++...+.+.++.
T Consensus       240 ~~L~~i~-~Pptia~iiA~vigai~pLr~lifg~~apl~~itdsv~llG~~~IP~illvLGgnL~~g~~ss~~~~~~iig  318 (408)
T KOG2722|consen  240 VILKEIF-APPTIAAIIALVIGAIPPLRRLIFGEDAPLRVITDSVTLLGDGAIPCILLVLGGNLIQGLRSSALKTSVIIG  318 (408)
T ss_pred             hhHHHhc-CchHHHHHHHHHHhcchHHHHHhhccCchHHHHHHHHHHhccccchhhhhhhccccccCchhcccCceEEEE
Confidence            4455554 9999999999999988642    333334 699999999999999999999999997554333344566677


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 041301          259 GMVLKFIAGPAAMAIGSI  276 (291)
Q Consensus       259 ~~~~kli~~Pli~~~~~~  276 (291)
                      .++.|+++.|.++.++..
T Consensus       319 iii~R~illP~~gl~iv~  336 (408)
T KOG2722|consen  319 IIIGRYILLPLVGLGIVR  336 (408)
T ss_pred             EEEeeeeccchhhHHHHH
Confidence            888999999999987753

>COG3329 Predicted permease [General function prediction only]

Probab=97.62  E-value=0.039  Score=49.17  Aligned_cols=225  Identities=13%  Similarity=0.049  Sum_probs=115.7

Q ss_pred             HHHHHHHHhHhhhhhccccChhhhHHHHHHHHHHHhHHHHHHHhccCCCCCc---chhHHHHHHHHHHHHHHHHHHHHHh
Q 041301           16 PLYFALILGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTTHVDPFNM---NYRFIGADAISKLIIVIVLAFWGMC   92 (291)
Q Consensus        16 ~i~~li~iG~~~~r~~~~~~~~~~~~l~~lv~~v~lP~lif~~l~~~~~~~~---~~~~l~~~~~~~~i~~~~~~~~~~~   92 (291)
                      |..+....|.+..- .| -|-+.-+.+.+-+....+=|.=|+.=.+...+++   -........++.++.+..-+.++|+
T Consensus        18 P~llFf~~Gmlia~-~k-sdl~iP~~i~~~lslyLL~aIG~kGGveir~snl~a~v~~~~~~~aL~~li~~ia~f~l~kl   95 (372)
T COG3329          18 PTLLFFILGMLIAA-FK-SDLEIPEAIYQALSLYLLLAIGFKGGVEIRNSNLTAMVLPVALGVALGFLIVFIAYFLLRKL   95 (372)
T ss_pred             chHHHHHHHHHHHH-Hh-ccccCchHHHHHHHHHHHHHHhcccceeeecCCcchhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            77888888888753 33 2223334444444444444444443222221222   2222233334444444444455555


Q ss_pred             hcCCccchhhhhhhhhccccccccchHHHHHHhhcccchhH---HHHHHHHHHHHHHHHHHHHHHhhhccC---------
Q 041301           93 SKKGSCFSWCITNFSLCTLTNTLVLGVPLMKAMYGQMAVDL---VVQSSVFQSIVWFTIFLFILEFRRAGN---------  160 (291)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~N~~~~g~Pi~~~l~G~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  160 (291)
                      .+-+ ..++..++   ..|+...---+.-..+..-+.+.+|   +......-..-....+..+.+.+..++         
T Consensus        96 ~~vd-tvdaaA~a---g~yGsvS~~Tfaaa~t~Lee~giayeaym~A~lalMeiPallval~l~~~y~~~~k~s~aa~~~  171 (372)
T COG3329          96 PKVD-TVDAAATA---GTYGSVSAVTFAAAVTFLEESGIAYEAYMPAMLALMEIPALLVALVLANIYLNDEKRSAAAEAH  171 (372)
T ss_pred             cccc-hHHHHHHH---hhccchhHHHHHHHHHHHHHcCccHHHHHHHHHHHhhchHHHHHHHHHHHHHhccccccccccc
Confidence            4433 22322221   5666666666666666665555443   333333333223333444443221111         


Q ss_pred             ccccc-c---cCCC--C-------C-CCCChhHHHHHHHHHHHhhchhHHHHHHHHHHHHhhhccCCCcChhHHHHHHHh
Q 041301          161 ALEDL-E---EGHA--T-------S-SSRPSFWHLMKVVWLKLAKNPNSYACVIGLAWAFVANRWHFKMPSIIEGSILIM  226 (291)
Q Consensus       161 ~~~~~-~---~~~~--~-------s-~~~~~~~~~~~~~~~~~~~nP~~ia~i~gli~~~~~~~~~~~~P~~i~~~l~~l  226 (291)
                      +++-+ +   +.++  +       | +...+.+-..|+.+++.+.||-+..++.|+++.+.   .|-+--+.+.+..+-+
T Consensus       172 s~~~vA~~e~g~~~d~~ssr~~~~~~~~~ed~~v~~~ell~Esflnpal~lllggl~iGli---tGe~g~~vl~~F~~~l  248 (372)
T COG3329         172 SKQLVAAGEYGDQTDLASSRQEYLSPQWGEDNRVKIWELLQESFLNPALVLLLGGLAIGLI---TGEQGESVLKPFFDPL  248 (372)
T ss_pred             cccchhhcccCchhhhhhhhhhhcccccCcccchhhHHHHHHHHcCchHHHHHHHHHHhhe---eccCchhhhhhhhHHH
Confidence            11111 0   1111  0       1 01111122367889999999999999999999988   2333335667777888


Q ss_pred             hhhhhHHHHHHHhHHhhhhhhhh
Q 041301          227 SKAGTGTAMFSMGIFMALQEKLL  249 (291)
Q Consensus       227 ~~~~~plaL~~lG~~L~~~~~~~  249 (291)
                      =+....+-|+.+|+.-..+-++.
T Consensus       249 FqGvL~lflL~MGm~A~rrl~el  271 (372)
T COG3329         249 FQGVLCLFLLDMGMTAGRRLKEL  271 (372)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHH
Confidence            88999999999999876554443

>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function

Probab=97.57  E-value=0.028  Score=50.81  Aligned_cols=250  Identities=14%  Similarity=0.029  Sum_probs=122.1

Q ss_pred             HHHHHHHHhHhhhhhccccChhhhHHHHHHHHHHHhHHHHHHH---hccCCCCCcchhHHHHHHHHHHHHHHHHHHHH-H
Q 041301           16 PLYFALILGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEF---TTHVDPFNMNYRFIGADAISKLIIVIVLAFWG-M   91 (291)
Q Consensus        16 ~i~~li~iG~~~~r~~~~~~~~~~~~l~~lv~~v~lP~lif~~---l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~-~   91 (291)
                      |..+....|.+++. .| =|-+.-+.+.+++--..+=+.=|+.   +.++++++..+..+.+..++.++- +.++.+. |
T Consensus         1 P~vLFF~LG~~A~~-~k-SdL~iP~~i~k~lsiyLLlaIGlkGG~~l~~~~~~~~~~~~~~~~~lg~liP-l~~~~iLr~   77 (327)
T PF05982_consen    1 PVVLFFILGIIAAL-LK-SDLEIPEAIYKFLSIYLLLAIGLKGGVELAHSGLTALLLPLLAAVLLGILIP-LIAFPILRR   77 (327)
T ss_pred             CchHHHHHHHHHHH-Hc-CCCcCChhHHHHHHHHHHHHHhcccHHHHHcCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            44566677777653 22 2333344455544444433333332   223232221122222222333222 2233333 3


Q ss_pred             hhcCCccchhhhhhhhhccccccccchHHHHHHhhcccch---hHHHHHHHHHHHHHHHHHHHHHHhhhccCcc-ccccc
Q 041301           92 CSKKGSCFSWCITNFSLCTLTNTLVLGVPLMKAMYGQMAV---DLVVQSSVFQSIVWFTIFLFILEFRRAGNAL-EDLEE  167 (291)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~N~~~~g~Pi~~~l~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  167 (291)
                      +.|-+ +.+..  ++. +.|+...-.-+....+...++++   .|+..+...-+.-...+++.+....+.++++ ++.++
T Consensus        78 ~~~l~-~~daa--AiA-AhYGSVSavTF~~a~~~L~~~gi~yeg~m~a~~alME~PAIival~L~~~~~~~~~~~~~~~~  153 (327)
T PF05982_consen   78 LGKLD-RADAA--AIA-AHYGSVSAVTFAAALAFLESQGISYEGYMVALLALMESPAIIVALLLARLFSRKQAAGATASS  153 (327)
T ss_pred             ccCCC-hhhHH--HHH-HHcCchHHHHHHHHHHHHHHCCCCccccHHHHHHHHhhhHHHHHHHHHHHHhccccccccCCc
Confidence            33333 33332  222 56666666666666666655544   4444455555555556677776543332111 11111


Q ss_pred             CC--CC-CCCCChhHHHHHHHHHHHhhchhHHHHHHHHHHHHhhhccCCCcChhHHHHHHHhhhhhhHHHHHHHhHHhhh
Q 041301          168 GH--AT-SSSRPSFWHLMKVVWLKLAKNPNSYACVIGLAWAFVANRWHFKMPSIIEGSILIMSKAGTGTAMFSMGIFMAL  244 (291)
Q Consensus       168 ~~--~~-s~~~~~~~~~~~~~~~~~~~nP~~ia~i~gli~~~~~~~~~~~~P~~i~~~l~~l~~~~~plaL~~lG~~L~~  244 (291)
                      +.  .. ++++.+    +++.+++.++|+-++..+.|+++.+..   +-+=-+.+......+=+....+-|+-+|+.-+.
T Consensus       154 ~~~~~~~~~~~~~----~~~~l~E~l~~~sv~LLlGgliIG~~~---g~~g~~~i~pf~~~lF~G~L~lFLLeMGl~A~~  226 (327)
T PF05982_consen  154 TRVGAGSGHEGIS----WGELLHESLTNKSVVLLLGGLIIGFLA---GPEGVESIKPFFVDLFKGVLCLFLLEMGLVAAR  226 (327)
T ss_pred             ccccccccccccc----HHHHHHHHHcCchHHHHHHHHHHhhee---CccchhhccchhhccHHHHHHHHHHHhhHHHHH
Confidence            11  00 122333    788899999999999999999998872   211112233344444445555666666665543


Q ss_pred             hhhhhhcCchHHHHHHHHHHHHHHHH----HHHHHHHhCCCcc
Q 041301          245 QEKLLACGPSLTAFGMVLKFIAGPAA----MAIGSIATGLRGD  283 (291)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~kli~~Pli----~~~~~~~~~l~~~  283 (291)
                      +-++    .|+..+..+.==+++|++    +..+.++.|++.-
T Consensus       227 rL~~----l~~~g~~li~Fgi~~Pli~a~ig~~lg~~~gls~G  265 (327)
T PF05982_consen  227 RLRD----LRKVGWFLIAFGILMPLINALIGIGLGWLLGLSPG  265 (327)
T ss_pred             hhHH----HHhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            3222    344444444444567765    4455677787654

>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species

Probab=96.82  E-value=0.27  Score=46.03  Aligned_cols=68  Identities=15%  Similarity=0.131  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHhHhhhhhccccChhhhHHHHHHHHHHHhHHHHHHHhccCCCCCc---chhHHHHHHHHHH
Q 041301           12 VAMVPLYFALILGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTTHVDPFNM---NYRFIGADAISKL   80 (291)
Q Consensus        12 ~~vl~i~~li~iG~~~~r~~~~~~~~~~~~l~~lv~~v~lP~lif~~l~~~~~~~~---~~~~l~~~~~~~~   80 (291)
                      ..+=|..+.++.|.++.- .|+++......+.+.+....+|..++.-+.+.|+.++   ..+.+..++++.+
T Consensus        23 ~~l~~~vl~~~~~~~lsn-lgli~~p~~s~~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~F~~~~~   93 (378)
T PF05684_consen   23 KYLPGAVLCYLLGMLLSN-LGLIDSPASSPVYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLLAFLIGAV   93 (378)
T ss_pred             hhcCHHHHHHHHHHHHHH-CCCcCCCCcchHHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHHHH
Confidence            344477888899999976 8988656667899999999999999999999998753   5566666554443

>TIGR00841 bass bile acid transporter

Probab=96.08  E-value=0.11  Score=46.77  Aligned_cols=79  Identities=4%  Similarity=-0.061  Sum_probs=48.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhcCCccchhhhhhhhhccccccccchHHHHHHhhcccchhHHHHHHHHHHHHHHH
Q 041301           68 NYRFIGADAISKLIIVIVLAFWGMCSKKGSCFSWCITNFSLCTLTNTLVLGVPLMKAMYGQMAVDLVVQSSVFQSIVWFT  147 (291)
Q Consensus        68 ~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~g~Pi~~~l~G~~~~~~~~~~~~~~~~~~~~  147 (291)
                      .+....+..+...+.|.+++.++|..+.+.+++++ .++. ++..|++ +|+++....|+++....+..|.+.+.+....
T Consensus       194 ~~~~~~~~~ll~~~~~~~g~~~a~~~~l~~~~~~t-~~~~-~g~qN~~-lal~la~~~f~~~~a~~~~~~~v~~~~~~~~  270 (286)
T TIGR00841       194 GPLLLLVGILLPLAGFLLGYLLAKLAGLPWARCRT-ISIE-VGMQNSQ-LCSTIAQLSFSPEVAVPSAIFPLIYALFQLA  270 (286)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhhhee-eeee-eecccHH-HHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence            34444444455667788888888875544122222 2233 6778887 9999999999866555455565555544443


Q ss_pred             HH
Q 041301          148 IF  149 (291)
Q Consensus       148 ~~  149 (291)
                      ++
T Consensus       271 ~a  272 (286)
T TIGR00841       271 FA  272 (286)
T ss_pred             HH
Confidence            33

Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.

>TIGR00841 bass bile acid transporter

Probab=96.03  E-value=0.014  Score=52.49  Aligned_cols=63  Identities=17%  Similarity=0.084  Sum_probs=50.1

Q ss_pred             hhhhHHHHHHHhHHhhhhh-hhhhcCchHHHHHHHHHHHHHHHHHHHHHHHhCCCccchhcccc
Q 041301          228 KAGTGTAMFSMGIFMALQE-KLLACGPSLTAFGMVLKFIAGPAAMAIGSIATGLRGDVLRVSII  290 (291)
Q Consensus       228 ~~~~plaL~~lG~~L~~~~-~~~~~~~~~~~~~~~~kli~~Pli~~~~~~~~~l~~~~~~~~vl  290 (291)
                      -....++++.+|++++.++ ++..++.+......+.|++++|++++++..+++++++.+...++
T Consensus        11 ~~~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~~~~~l~~~~~~glvL   74 (286)
T TIGR00841        11 LILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAKVFKLPPELAVGVLI   74 (286)
T ss_pred             HHHHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHh
Confidence            3447789999999998655 23334556778889999999999999999999999988776654

Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.

>TIGR00832 acr3 arsenical-resistance protein

Probab=95.97  E-value=0.044  Score=50.24  Aligned_cols=94  Identities=11%  Similarity=0.040  Sum_probs=62.0

Q ss_pred             HHHhhchhHHHHHHHHHHHHhhhccCCCcChhHHHHHH-HhhhhhhH------HHHHHHhHHhhhhh-hhhhcCchHHHH
Q 041301          187 LKLAKNPNSYACVIGLAWAFVANRWHFKMPSIIEGSIL-IMSKAGTG------TAMFSMGIFMALQE-KLLACGPSLTAF  258 (291)
Q Consensus       187 ~~~~~nP~~ia~i~gli~~~~~~~~~~~~P~~i~~~l~-~l~~~~~p------laL~~lG~~L~~~~-~~~~~~~~~~~~  258 (291)
                      .+.+....+.++++|++....       .|+.....-. ...+...|      ..|+.+|..+..++ ++..+++|....
T Consensus         5 ~~~~~~~~~~~~i~~~~~g~~-------~P~~~~~~~~~~~~~~~~~~~~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~   77 (328)
T TIGR00832         5 ERYLTLWIFLAIAAGVGLGVL-------FPSVFQALAALEVATVSIPIAIGLILMMYPPLAKVDYSALGDVFKDPKGLIL   77 (328)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh-------ccccHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHHcCchHHHH
Confidence            344555667788888888765       4443322211 11233444      35677777776544 344567888999


Q ss_pred             HHHHHHHHHHHHHHHHHHHh-CCCccchhc
Q 041301          259 GMVLKFIAGPAAMAIGSIAT-GLRGDVLRV  287 (291)
Q Consensus       259 ~~~~kli~~Pli~~~~~~~~-~l~~~~~~~  287 (291)
                      +....++++|++++++++.+ +.+++.+..
T Consensus        78 ~~~~qfvi~Plla~~l~~l~~~~~p~l~~G  107 (328)
T TIGR00832        78 SLFINWIIGPFLMFLLAWLFLRDLFEYIAG  107 (328)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence            99999999999999999865 888875543

The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.

>COG0385 Predicted Na+-dependent transporter [General function prediction only]

Probab=95.87  E-value=0.036  Score=50.17  Aligned_cols=75  Identities=15%  Similarity=0.138  Sum_probs=53.8

Q ss_pred             CcChhHHHHHHHhhhhhhHHHHHHHhHHhhhhh-hhhhcCchHHHHHHHHHHHHHHHHHHHHHHHhCCCccchhccc
Q 041301          214 KMPSIIEGSILIMSKAGTGTAMFSMGIFMALQE-KLLACGPSLTAFGMVLKFIAGPAAMAIGSIATGLRGDVLRVSI  289 (291)
Q Consensus       214 ~~P~~i~~~l~~l~~~~~plaL~~lG~~L~~~~-~~~~~~~~~~~~~~~~kli~~Pli~~~~~~~~~l~~~~~~~~v  289 (291)
                      -.|+.....-... .....+.++..|+.|..+. +...++++....+.+.-++++|++++++++++.+|++.+.-.+
T Consensus        28 ~~~~~~~~~~~~~-~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~~l~~~l~~Gl~  103 (319)
T COG0385          28 IFPETFGWLGSAI-PIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLFPLPPELAVGLL  103 (319)
T ss_pred             hccccchhhhHHH-HHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhHH
Confidence            3454443332222 5556667777777776443 3344678999999999999999999999999999998776544

>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]

Probab=93.55  E-value=0.48  Score=40.72  Aligned_cols=97  Identities=11%  Similarity=0.001  Sum_probs=72.5

Q ss_pred             HHHHhhchhHHHHHHHHHHHHhhhccCCCcChhHHHHHHHhhhhhhHHHHHHHhHHhhhhhhhhhcCchHHHHHHHHHHH
Q 041301          186 WLKLAKNPNSYACVIGLAWAFVANRWHFKMPSIIEGSILIMSKAGTGTAMFSMGIFMALQEKLLACGPSLTAFGMVLKFI  265 (291)
Q Consensus       186 ~~~~~~nP~~ia~i~gli~~~~~~~~~~~~P~~i~~~l~~l~~~~~plaL~~lG~~L~~~~~~~~~~~~~~~~~~~~kli  265 (291)
                      .|+.+.||.+++.++.+.+-..   .+++.. -...--+.+.+.--| +-.++..=|..+.+..+++|+.+...+++=-+
T Consensus        28 ~~~~~l~PlLv~~~~li~~L~~---~~i~Y~-~Y~~g~~~i~~lLgP-AtVAlAvPLYkq~~~ik~~w~~I~~g~~vGs~  102 (230)
T COG1346          28 TKSPFLNPLLVATVLLIAFLLL---FGISYE-DYMKGGQWINFLLGP-ATVALAVPLYKQRHLIKRHWKPILAGVLVGSV  102 (230)
T ss_pred             cCCcccchHHHHHHHHHHHHHH---cCCCHH-HHhcccHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567889999999888877665   355443 334444555555556 77788888887666677889999988888888


Q ss_pred             HHHHHHHHHHHHhCCCccchhc
Q 041301          266 AGPAAMAIGSIATGLRGDVLRV  287 (291)
Q Consensus       266 ~~Pli~~~~~~~~~l~~~~~~~  287 (291)
                      +.=...+.+++++|+|++..+.
T Consensus       103 ~ai~s~~llak~~g~~~~~~~S  124 (230)
T COG1346         103 VAIISGVLLAKLFGLSPELILS  124 (230)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHH
Confidence            8888889999999999876554

>TIGR00783 ccs citrate carrier protein, CCS family

Probab=92.91  E-value=7.6  Score=35.82  Aligned_cols=246  Identities=13%  Similarity=0.085  Sum_probs=125.9

Q ss_pred             ccccChhhhHHHHHHH-----HHHHhHHHHHHHhccCCCCCc---chhHHHHHHHHHHHHHHHHHHHHHhhcCCccchhh
Q 041301           31 WKIIAPEECAAINRLV-----CYFTLPLFTIEFTTHVDPFNM---NYRFIGADAISKLIIVIVLAFWGMCSKKGSCFSWC  102 (291)
Q Consensus        31 ~~~~~~~~~~~l~~lv-----~~v~lP~lif~~l~~~~~~~~---~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  102 (291)
                      .++++++..+..+++.     .|+...|++--|+...|.+-+   -.+++...+.+.....+++.+...+.+.+ ..+..
T Consensus         6 ~~~~p~~~~~~~~~fm~~~~Fl~fyIa~LI~GSIL~m~Rk~Lik~~~r~~p~il~g~~~a~~~g~lvG~l~G~~-~~~~~   84 (347)
T TIGR00783         6 YNILPQNVIDATSNFMKGSNFLYLYIACLIVGSILGMNRKLLLKALMRFIPPALIGMVLAVIVGILVGTLFGLG-FDHSL   84 (347)
T ss_pred             eCCCCHHHHHHHHHHHccCChHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-HhHhh
Confidence            5889999998888854     478889999999988775422   44566666666666666665555555544 33322


Q ss_pred             hhh-h-hhccccccccchHHHHHH-hhcccchhHHHHHHHHHHHHHHHHHHHHHHh----hh--c---cCc----cc-c-
Q 041301          103 ITN-F-SLCTLTNTLVLGVPLMKA-MYGQMAVDLVVQSSVFQSIVWFTIFLFILEF----RR--A---GNA----LE-D-  164 (291)
Q Consensus       103 ~~~-~-~~~~~~N~~~~g~Pi~~~-l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~---~~~----~~-~-  164 (291)
                      ..- . ..+.-.+.|..++..+.+ ..|++.-.+.... +....+-+.+++.....    .+  .   ++.    ++ | 
T Consensus        85 ~~i~lPIm~GG~GaGavPLS~~Y~~~~g~~~~~~~s~~-ip~~~igni~AIi~agll~~lG~~~p~ltG~G~L~~~~~~~  163 (347)
T TIGR00783        85 MYIVMPIMAGGVGAGIVPLSIIYSAITGRSSEEIFSQL-IPAVIIGNIFAIICAGLLSRIGKKRPKLNGHGELVRSEKRE  163 (347)
T ss_pred             heeeehhcCCCcccchhhHHHHHHHHhCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccCCCcCCCceEeecCCcc
Confidence            111 1 113434466666665544 5565543332221 11112223333322211    11  1   110    00 1 


Q ss_pred             c-ccCCCCCCCCChhHHH------------HHHHHHHHh--hchhHHHHHHHHHHHHhhhccCCCcChhHHHHHHHhhh-
Q 041301          165 L-EEGHATSSSRPSFWHL------------MKVVWLKLA--KNPNSYACVIGLAWAFVANRWHFKMPSIIEGSILIMSK-  228 (291)
Q Consensus       165 ~-~~~~~~s~~~~~~~~~------------~~~~~~~~~--~nP~~ia~i~gli~~~~~~~~~~~~P~~i~~~l~~l~~-  228 (291)
                      . ++++++.+.+.+.++.            ..... +.+  .+++.+.++++.+++.+    ++ +|+-+.+-.+..++ 
T Consensus       164 ~~~~~~~~~~~~~~~~~~g~Gl~~a~~~y~~g~l~-~~~~~Ih~~v~mII~~vi~k~~----gl-lp~~i~~~a~~~~~F  237 (347)
T TIGR00783       164 DAEKAKEITEIKIDVKLMGSGVLFAVALFMAGGLL-KSFPGIPAYAFMILIAAALKAF----GL-VPKEIEEGAKMLSQF  237 (347)
T ss_pred             hhhhccccccCCCCHHHHHHHHHHHHHHHHHHHHH-HhcccCCHHHHHHHHHHHHHHh----CC-CCHHHHHHHHHHHHH
Confidence            1 0111110112221110            11111 222  37899999999999998    76 88887777777773 


Q ss_pred             ---hhhHHHHHHHhHHhhhhhhhhhcCc-hHHHHHHHHHHHHHHHHHHHHHHHhCCCccch
Q 041301          229 ---AGTGTAMFSMGIFMALQEKLLACGP-SLTAFGMVLKFIAGPAAMAIGSIATGLRGDVL  285 (291)
Q Consensus       229 ---~~~plaL~~lG~~L~~~~~~~~~~~-~~~~~~~~~kli~~Pli~~~~~~~~~l~~~~~  285 (291)
                         ..++..+..+|.....-++ ..... ......++.=.+.+=+..+.+.+++|+-|..+
T Consensus       238 ~~~~lt~~ll~giGla~t~l~~-L~~a~t~~~vviiv~~Vlg~ii~s~lvGKllG~YPiE~  297 (347)
T TIGR00783       238 ISKNLTWPLMVGVGVSYIDLDD-LVAALSWQFVVICLSVVVAMILGGAFLGKLMGMYPVES  297 (347)
T ss_pred             HHHHHHHHHHHHcccccCCHHH-HHHHhchhHhhhHHHHHHHHHHHHHHHHHHhCCChHHH
Confidence               3444445555655322221 12222 33344444444444555566778888766544

These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.

>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins

Probab=92.78  E-value=7.4  Score=35.33  Aligned_cols=213  Identities=11%  Similarity=0.091  Sum_probs=108.5

Q ss_pred             HHHHHHHHHHHHHHhHhhh-hhccccChhhhHHHHHHHHHHHhHHHHH--HHhccCCCCCcchhHHHHHHHHHHHHHHHH
Q 041301           10 VIVAMVPLYFALILGYGSV-KWWKIIAPEECAAINRLVCYFTLPLFTI--EFTTHVDPFNMNYRFIGADAISKLIIVIVL   86 (291)
Q Consensus        10 vl~~vl~i~~li~iG~~~~-r~~~~~~~~~~~~l~~lv~~v~lP~lif--~~l~~~~~~~~~~~~l~~~~~~~~i~~~~~   86 (291)
                      ++..++-+...+.+++.++ |+.| +|++..--+. -=.-++=..-+.  ....+++-++.....-.....+...+++ .
T Consensus        86 ~~~~~~~v~~~~~~~~~lg~r~~~-l~~~~~~Lia-~GtsICG~SAi~A~a~~i~a~~~~~a~ava~V~lfg~vam~~-~  162 (305)
T PF03601_consen   86 LLIIIIVVILTFLLTYWLGRRLFG-LDRKLAILIA-AGTSICGASAIAATAPVIKAKEEDVAYAVATVFLFGTVAMFL-Y  162 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHH-hhcccchHHHHHHHcccccCCCCceeeeehHHHHHHHHHHHH-H
Confidence            4455666777788888888 6555 3544322222 222222222222  2244555343322222222222222221 1


Q ss_pred             HHHHHhhcCCccchhhhhhhhhccccccccchHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhccCcccccc
Q 041301           87 AFWGMCSKKGSCFSWCITNFSLCTLTNTLVLGVPLMKAMYGQMAVDLVVQSSVFQSIVWFTIFLFILEFRRAGNALEDLE  166 (291)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~g~Pi~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (291)
                      -.+......+ +...  ..+.+.+--|++-.  --....||++....+...-...+.+.-++...+.-+.+.++++    
T Consensus       163 P~l~~~l~l~-~~~~--G~w~G~sIh~~aqV--vaAg~~~g~~a~~~A~ivKl~Rv~lL~pv~~~l~~~~~~~~~~----  233 (305)
T PF03601_consen  163 PLLGHALGLS-PQQF--GAWAGGSIHDTAQV--VAAGAIYGEEAGDVATIVKLTRVLLLGPVVLVLALFWARRQEK----  233 (305)
T ss_pred             HHHHHHhCCC-HHHH--HHHhhhhhcccchH--hhhhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc----
Confidence            2233433333 2221  11333444555432  2234457888878888888888877766666554332221110    


Q ss_pred             cCCCCCCCCChhHHHHHHHHHHHhhchhHHHHHHHHHHHHhhhccCCCcChhHHHHHHHhhhhhhHHHHHHHhHHhhhhh
Q 041301          167 EGHATSSSRPSFWHLMKVVWLKLAKNPNSYACVIGLAWAFVANRWHFKMPSIIEGSILIMSKAGTGTAMFSMGIFMALQE  246 (291)
Q Consensus       167 ~~~~~s~~~~~~~~~~~~~~~~~~~nP~~ia~i~gli~~~~~~~~~~~~P~~i~~~l~~l~~~~~plaL~~lG~~L~~~~  246 (291)
                             ++.+    .+   |  ..-|.++--.++...-.+    -...|+.+.+.++.+++-..-++|.++|.+.+.++
T Consensus       234 -------~~~~----~~---~--~~~P~FvlgFl~~~~l~s----~~~~~~~~~~~~~~~s~~~~~~A~aaiGl~~~~~~  293 (305)
T PF03601_consen  234 -------SSGK----SK---K--VSFPWFVLGFLAASLLNS----LGLLPAAVVSALKSLSKWLFALAMAAIGLSTNFKD  293 (305)
T ss_pred             -------cccc----cC---c--cCcCHHHHHHHHHHHHHH----HhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHH
Confidence                   0111    00   1  225655444444433333    34688999999999999999999999999997655


Q ss_pred             hhhhcCchH
Q 041301          247 KLLACGPSL  255 (291)
Q Consensus       247 ~~~~~~~~~  255 (291)
                       ..+.++|.
T Consensus       294 -l~~~G~kp  301 (305)
T PF03601_consen  294 -LKQVGWKP  301 (305)
T ss_pred             -HHhcCccc
Confidence             22344554

; GO: 0016021 integral to membrane

>PRK10711 hypothetical protein; Provisional

Probab=92.20  E-value=0.77  Score=39.80  Aligned_cols=96  Identities=7%  Similarity=-0.068  Sum_probs=71.8

Q ss_pred             HHHhhchhHHHHHHHHHHHHhhhccCCCcChhHHHHHHHhhhhhhHHHHHHHhHHhhhhhhhhhcCchHHHHHHHHHHHH
Q 041301          187 LKLAKNPNSYACVIGLAWAFVANRWHFKMPSIIEGSILIMSKAGTGTAMFSMGIFMALQEKLLACGPSLTAFGMVLKFIA  266 (291)
Q Consensus       187 ~~~~~nP~~ia~i~gli~~~~~~~~~~~~P~~i~~~l~~l~~~~~plaL~~lG~~L~~~~~~~~~~~~~~~~~~~~kli~  266 (291)
                      ++.+.||.+++.++-+.+-..   .+++..++ .+.-+.+....-| +-.+++.-+..+.+..+++++++...+.+=-++
T Consensus        27 ~~~~l~Pll~s~~~ii~~L~~---~~i~Y~~Y-~~g~~~l~~lLgP-AtVALAvPLY~q~~~lk~~~~~I~~~~~vG~~v  101 (231)
T PRK10711         27 KFPLLNPLLVAMVVIIPFLLL---TGIPYEHY-FKGSEVLNDLLQP-AVVALAFPLYEQLHQIRARWKSIISICFIGSVV  101 (231)
T ss_pred             CCCcccHHHHHHHHHHHHHHH---hCCCHHHH-HhccHHHHhhhhH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            566779999888766665444   26555444 4455666665555 556778888877667788899999999999999


Q ss_pred             HHHHHHHHHHHhCCCccchhc
Q 041301          267 GPAAMAIGSIATGLRGDVLRV  287 (291)
Q Consensus       267 ~Pli~~~~~~~~~l~~~~~~~  287 (291)
                      .-...+.+++++|+|++....
T Consensus       102 ~i~s~~~l~~~lg~~~~~~~S  122 (231)
T PRK10711        102 AMVTGTAVALWMGATPEIAAS  122 (231)
T ss_pred             HHHHHHHHHHHHCcCHHHHHH
Confidence            999999999999999876554

>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance []

Probab=91.82  E-value=1.2  Score=38.21  Aligned_cols=97  Identities=14%  Similarity=0.071  Sum_probs=70.3

Q ss_pred             HHHHhhchhHHHHHHHHHHHHhhhccCCCcChhHHHHHHHhhhhhhHHHHHHHhHHhhhhhhhhhcCchHHHHHHHHHHH
Q 041301          186 WLKLAKNPNSYACVIGLAWAFVANRWHFKMPSIIEGSILIMSKAGTGTAMFSMGIFMALQEKLLACGPSLTAFGMVLKFI  265 (291)
Q Consensus       186 ~~~~~~nP~~ia~i~gli~~~~~~~~~~~~P~~i~~~l~~l~~~~~plaL~~lG~~L~~~~~~~~~~~~~~~~~~~~kli  265 (291)
                      +++.+.||.+++.++=+.+-..   .+.+..++. +.-+.+....-| +-.+++.-+..+.+..+++++.+...+..=-+
T Consensus        15 ~~~~~l~P~l~a~~~ii~~L~~---~~i~y~~Y~-~gg~~l~~lLgP-atVALAvPLY~~~~~l~~~~~~il~~~~~g~~   89 (215)
T PF04172_consen   15 FKSPFLNPLLIAIVLIIAFLLL---TGIPYEDYM-QGGDILSFLLGP-ATVALAVPLYRQRRLLKKNWIPILVGVLVGSL   89 (215)
T ss_pred             cCCCcccHHHHHHHHHHHHHHH---HCCCHHHHH-HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455679999988775444333   266554443 455666554444 47888999987666777888999988888888


Q ss_pred             HHHHHHHHHHHHhCCCccchhc
Q 041301          266 AGPAAMAIGSIATGLRGDVLRV  287 (291)
Q Consensus       266 ~~Pli~~~~~~~~~l~~~~~~~  287 (291)
                      +.-.....+++++|+|++....
T Consensus        90 ~~~~~~~~l~~~lgl~~~~~~S  111 (215)
T PF04172_consen   90 VSIFSAVLLARLLGLSPEIILS  111 (215)
T ss_pred             HHHHHHHHHHHHHCcCHHHHHH
Confidence            8888899999999999876543

>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes

Probab=91.81  E-value=0.31  Score=40.80  Aligned_cols=58  Identities=19%  Similarity=0.225  Sum_probs=40.6

Q ss_pred             hHHHHHHHhHHhhhhh-hhhhcCchHHHHHHHHHHHHHHHHHHHHH-HHhCCCccchhcc
Q 041301          231 TGTAMFSMGIFMALQE-KLLACGPSLTAFGMVLKFIAGPAAMAIGS-IATGLRGDVLRVS  288 (291)
Q Consensus       231 ~plaL~~lG~~L~~~~-~~~~~~~~~~~~~~~~kli~~Pli~~~~~-~~~~l~~~~~~~~  288 (291)
                      .-..++.+|.+++.++ ++..++.|....+.+.+++++|++++++. ..++.+++.+...
T Consensus         4 l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~~~~~~~~~~Gl   63 (187)
T PF01758_consen    4 LFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLLLPLSPALALGL   63 (187)
T ss_dssp             HHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HHTT--HHHHHHH
T ss_pred             hhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            4467788888887554 33335567778899999999999999998 8888888755443

They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.

>PRK04288 antiholin-like protein LrgB; Provisional

Probab=91.27  E-value=1.5  Score=38.05  Aligned_cols=96  Identities=15%  Similarity=-0.013  Sum_probs=70.0

Q ss_pred             HHHhhchhHHHHHHHHHHHHhhhccCCCcChhHHHHHHHhhhhhhHHHHHHHhHHhhhhhhhhhcCchHHHHHHHHHHHH
Q 041301          187 LKLAKNPNSYACVIGLAWAFVANRWHFKMPSIIEGSILIMSKAGTGTAMFSMGIFMALQEKLLACGPSLTAFGMVLKFIA  266 (291)
Q Consensus       187 ~~~~~nP~~ia~i~gli~~~~~~~~~~~~P~~i~~~l~~l~~~~~plaL~~lG~~L~~~~~~~~~~~~~~~~~~~~kli~  266 (291)
                      ++.+.||.+++.++-+.+-..   .+++..+. .+.-+.+....-| +-.+++.-+..+.+..+++++.+...+++=-++
T Consensus        32 ~~~~lnPll~s~~~ii~~L~~---~~i~Y~~Y-~~g~~~l~~lLgP-AtVALAvPLY~q~~~lk~~~~~Il~~~~vG~~~  106 (232)
T PRK04288         32 GFFLFTPLFVAMVLGIAFLKL---TGISYEEY-NIGGDIISFFLEP-ATIAFAIPLYKKRDVLKKYWWQILGGIVVGSVC  106 (232)
T ss_pred             CCcchhHHHHHHHHHHHHHHH---hCCCHHHH-HhhhHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            455679999888776665544   25555443 4455555555444 556778888876677788899999999999999


Q ss_pred             HHHHHHHHHHHhCCCccchhc
Q 041301          267 GPAAMAIGSIATGLRGDVLRV  287 (291)
Q Consensus       267 ~Pli~~~~~~~~~l~~~~~~~  287 (291)
                      .-...+.+++++|+|++....
T Consensus       107 ~i~s~~~la~~lgl~~~~~~S  127 (232)
T PRK04288        107 SVLIIYLVAKLIQLDNAVMAS  127 (232)
T ss_pred             HHHHHHHHHHHHCcCHHHHHH
Confidence            999999999999999876543

>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom

Probab=90.61  E-value=16  Score=34.64  Aligned_cols=263  Identities=11%  Similarity=0.062  Sum_probs=135.9

Q ss_pred             HHHHHHHHhHhhhhhccccChhhhHHHHHHH-----HHHHhHHHHHHHhccCCCCCc---chhHHHHHHHHHHHHHHHHH
Q 041301           16 PLYFALILGYGSVKWWKIIAPEECAAINRLV-----CYFTLPLFTIEFTTHVDPFNM---NYRFIGADAISKLIIVIVLA   87 (291)
Q Consensus        16 ~i~~li~iG~~~~r~~~~~~~~~~~~l~~lv-----~~v~lP~lif~~l~~~~~~~~---~~~~l~~~~~~~~i~~~~~~   87 (291)
                      ++++++.--++. . .++++++..+..+++.     .|+..-+++--|+...|.+-+   -.+++...+.+....++++.
T Consensus        62 ~il~~f~ps~Lv-~-~~~ip~~~~~~v~~fm~~~~Fl~ffIa~LI~GSILgm~RklLika~~r~~p~il~g~~~a~~~g~  139 (414)
T PF03390_consen   62 AILCIFVPSALV-Y-FGLIPESVVEAVTNFMKGSNFLYFFIAALIVGSILGMNRKLLIKAFARFIPPILGGVIGAFLLGG  139 (414)
T ss_pred             HHHHHHHHHHHH-H-cCCCCHHHHHHHHHHhccCChHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355666666665 4 6999999999988886     578888999999888775422   45666666666666666666


Q ss_pred             HHHHhhcCCccchhhhhh-h-hhccccccccchHHHH-HHhhcccchhHH---HHHHHHHHHHHHHHHHHHHHhhhcc--
Q 041301           88 FWGMCSKKGSCFSWCITN-F-SLCTLTNTLVLGVPLM-KAMYGQMAVDLV---VQSSVFQSIVWFTIFLFILEFRRAG--  159 (291)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~-~-~~~~~~N~~~~g~Pi~-~~l~G~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~--  159 (291)
                      +...+.+.+ ..+....- . ..+.-.+.|.+++... ....|.+.-.+.   +......+++.-..+-.+-...+..  
T Consensus       140 lvG~l~G~~-~~~~i~~i~lPIMgGG~GaGavPLS~~Ya~~~g~~~~~~~s~~ipa~~lgNi~AIi~aglL~~lg~~~P~  218 (414)
T PF03390_consen  140 LVGMLFGYS-FKDAIFYIVLPIMGGGMGAGAVPLSQIYAEALGQDAEEYFSQLIPALTLGNIFAIIFAGLLNKLGKKKPK  218 (414)
T ss_pred             HHHHHhCCC-HHHHHHHHHhhhcCCCccccHhHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence            666665554 33332211 1 1133334555544443 223354432222   2222222222221111111111111  


Q ss_pred             --Cc------ccccccCCCCCCCCChhH------------HHHHHHHHHHhh-chhHHHHHHHHHHHHhhhccCCCcChh
Q 041301          160 --NA------LEDLEEGHATSSSRPSFW------------HLMKVVWLKLAK-NPNSYACVIGLAWAFVANRWHFKMPSI  218 (291)
Q Consensus       160 --~~------~~~~~~~~~~s~~~~~~~------------~~~~~~~~~~~~-nP~~ia~i~gli~~~~~~~~~~~~P~~  218 (291)
                        +|      ++|.++++++++++.+..            ......+.+.+. +++.+-+++..+++.+    +. +|+.
T Consensus       219 ltGnG~L~~~~~~~~~~~~~~~~~~~~~~~g~Gllla~~~y~~G~ll~~~i~ih~~a~mIi~~~i~K~~----~l-vP~~  293 (414)
T PF03390_consen  219 LTGNGQLLKGGDDEEEEAKKKEKPIDFSDMGAGLLLACSFYILGVLLSKLIGIHAYAWMIILVAIVKAF----GL-VPES  293 (414)
T ss_pred             CCCCceEEeCCccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHh----Cc-CCHH
Confidence              11      111111111111222211            111223333332 4466777777777777    65 7776


Q ss_pred             HHHHH----HHhhhhhhHHHHHHHhHHhhhhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHhCCCccchh
Q 041301          219 IEGSI----LIMSKAGTGTAMFSMGIFMALQEKLLACGPSLTAFGMVLKFIAGPAAMAIGSIATGLRGDVLR  286 (291)
Q Consensus       219 i~~~l----~~l~~~~~plaL~~lG~~L~~~~~~~~~~~~~~~~~~~~kli~~Pli~~~~~~~~~l~~~~~~  286 (291)
                      +.+..    +......++..|..+|...-.-++....-.......++.-.+..-+..+.+.+++|+-+..+.
T Consensus       294 ~e~~a~~~~~f~~~~lt~~lLvgiGv~~~~l~~l~~a~t~~~vv~~~~~Vl~~~~~a~~vG~l~g~YPvEsA  365 (414)
T PF03390_consen  294 LEEGAKQWYKFFSKNLTWPLLVGIGVAYTDLNDLIAAFTPQYVVIVLATVLGAVIGAFLVGKLVGFYPVESA  365 (414)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHH
Confidence            66555    455667889999999998432222222112233344444445555556667888888765543

They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane

>TIGR00659 conserved hypothetical protein TIGR00659

Probab=90.54  E-value=1.7  Score=37.58  Aligned_cols=95  Identities=8%  Similarity=-0.035  Sum_probs=68.8

Q ss_pred             HHHhhchhHHHHHHHHHHHHhhhccCCCcChhHHHHHHHhhhhhhHHHHHHHhHHhhhhhhhhhcCchHHHHHHHHHHHH
Q 041301          187 LKLAKNPNSYACVIGLAWAFVANRWHFKMPSIIEGSILIMSKAGTGTAMFSMGIFMALQEKLLACGPSLTAFGMVLKFIA  266 (291)
Q Consensus       187 ~~~~~nP~~ia~i~gli~~~~~~~~~~~~P~~i~~~l~~l~~~~~plaL~~lG~~L~~~~~~~~~~~~~~~~~~~~kli~  266 (291)
                      ++.+.||.+++.++-+.+-..   .+++..+. .+--+.+....-| +..+++.-+..+.+..+++++++...+..=-++
T Consensus        26 ~~~~lnPvl~~~~~ii~~L~~---~~i~Y~~Y-~~g~~~l~~lLgP-AtVALAvPLY~~~~~lk~~~~~Il~~~~~G~~~  100 (226)
T TIGR00659        26 KRPYLNPLLLTPLVLVGILLL---VGIPYESY-MLGGGVINDLLGP-AVVALAIPLYKQLPQIKKYWKEIILNVAVGSVI  100 (226)
T ss_pred             CCccccHHHHHHHHHHHHHHH---hCCCHHHH-HHhhHHHHHhhHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            566789999988876665444   25555444 4555555544433 567788888776667778888888888888888


Q ss_pred             HHHHHHHHHHHhCCCccchh
Q 041301          267 GPAAMAIGSIATGLRGDVLR  286 (291)
Q Consensus       267 ~Pli~~~~~~~~~l~~~~~~  286 (291)
                      .-.....+++++|++++...
T Consensus       101 ~~~s~~~la~~lg~~~~i~~  120 (226)
T TIGR00659       101 AIISGTLLALLLGLGPEIIA  120 (226)
T ss_pred             HHHHHHHHHHHHCcCHHHHH
Confidence            88888899999999987654

Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.

>COG0385 Predicted Na+-dependent transporter [General function prediction only]

Probab=89.26  E-value=17  Score=33.14  Aligned_cols=192  Identities=10%  Similarity=0.047  Sum_probs=110.8

Q ss_pred             chhHHHHHHHHHH-HHHHHHHHHHHhhcCCccchhhhhhhhhccccccccchHHHHHHhh-cccchhHHHH-HHHHHHHH
Q 041301           68 NYRFIGADAISKL-IIVIVLAFWGMCSKKGSCFSWCITNFSLCTLTNTLVLGVPLMKAMY-GQMAVDLVVQ-SSVFQSIV  144 (291)
Q Consensus        68 ~~~~l~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~g~Pi~~~l~-G~~~~~~~~~-~~~~~~~~  144 (291)
                      +|+.......+.. ++-++++..++..+-+  .+-+...+..++.+-+ --. .+..++. ||-+.+.... .+..-.++
T Consensus        66 ~p~~vligl~~qfvlmPlla~~~~~~~~l~--~~l~~Gl~ll~~~Pgg-v~S-~~~t~lAkGnValsV~~tsvStll~~f  141 (319)
T COG0385          66 HPRLVLIGLAAQFVLMPLLALLLAKLFPLP--PELAVGLLLLGCCPGG-VAS-NAMTYLAKGNVALSVCSTSVSTLLGPF  141 (319)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHcCCC--HHHHHhHHheeeCCCc-hhH-HHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence            7776654444433 3334566677765533  2323222222333333 233 5566666 6655432211 11222344


Q ss_pred             HHHHHHHHHHhhhccCcccccccCCCCCCCCChhHHHHHHHHHHHhhchhHHHHHHHHHHHHhhhccCCCcChhHHHHHH
Q 041301          145 WFTIFLFILEFRRAGNALEDLEEGHATSSSRPSFWHLMKVVWLKLAKNPNSYACVIGLAWAFVANRWHFKMPSIIEGSIL  224 (291)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~nP~~ia~i~gli~~~~~~~~~~~~P~~i~~~l~  224 (291)
                      .-|+-+.++..  ++              ...+.+    +.+++++. -.++-.++|.++.-.       .|+++...-+
T Consensus       142 ~tPllv~l~~~--~~--------------v~~~~~----~m~~~i~~-~vllP~~LG~~~r~~-------~~~~~~~~~~  193 (319)
T COG0385         142 LTPLLVGLLAG--GG--------------VPVDVG----GMFLSILL-QVLLPFVLGQLLRPL-------LPKWVERLKK  193 (319)
T ss_pred             HHHHHHHHHhc--CC--------------CCCchH----HHHHHHHH-HHHHHHHHHHHHHHH-------HHHHHHHHhh
Confidence            45666655542  21              122323    33444432 245556778887755       6788888888


Q ss_pred             HhhhhhhHHHHHHHhHHhhhhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHhCCCccchhccccC
Q 041301          225 IMSKAGTGTAMFSMGIFMALQEKLLACGPSLTAFGMVLKFIAGPAAMAIGSIATGLRGDVLRVSIIQ  291 (291)
Q Consensus       225 ~l~~~~~plaL~~lG~~L~~~~~~~~~~~~~~~~~~~~kli~~Pli~~~~~~~~~l~~~~~~~~vl~  291 (291)
                      .+.....-..++++....+............+...+.+-+.+.=.+++...+.+|+|.+..++..+|
T Consensus       194 ~l~~vs~~~illIv~~~~s~~~~~~~~~~~~v~~~v~~~n~lg~~~gy~~ar~~g~~~a~~iti~ie  260 (319)
T COG0385         194 ALPPVSVLSILLIVYAAFSAAVENGIWSGLLIFVAVILHNLLGLLLGYFGARLLGFDKADEITIAIE  260 (319)
T ss_pred             hcchhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhheeeEEEe
Confidence            8888888888888888887544222222224456677778888888888899999999998887765

>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)

Probab=88.69  E-value=11  Score=34.41  Aligned_cols=110  Identities=16%  Similarity=0.176  Sum_probs=56.9

Q ss_pred             HHHHHHHHhHhhhhhccccChhhhHHHHHHHHHHHhHHHHHHHhccC---C-CCCcchhHHHHH-HHH---HHHHHHHHH
Q 041301           16 PLYFALILGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTTHV---D-PFNMNYRFIGAD-AIS---KLIIVIVLA   87 (291)
Q Consensus        16 ~i~~li~iG~~~~r~~~~~~~~~~~~l~~lv~~v~lP~lif~~l~~~---~-~~~~~~~~l~~~-~~~---~~i~~~~~~   87 (291)
                      .+++=+.+|-+++|+.+-..++ .|...+.+-...+-..++.++.+.   + .++.+...+... .++   ..+.+.+++
T Consensus       166 ~vllP~~~Gq~~r~~~~~~~~~-~~~~~~~~~~~~ll~iv~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~  244 (313)
T PF13593_consen  166 TVLLPLVLGQLLRRWVPKWVAR-HKKPLSLLSQLALLLIVYSAFSSAFAQGAWHSVSAAALALIVAVSLLLLLVVLVLGW  244 (313)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344455677774332211112 344555667777777777776654   2 122333322221 111   122333455


Q ss_pred             HHHHhhcCCccchhhhhhhhhccccccccchHHHHHHhhccc
Q 041301           88 FWGMCSKKGSCFSWCITNFSLCTLTNTLVLGVPLMKAMYGQM  129 (291)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~g~Pi~~~l~G~~  129 (291)
                      ..+|..+-+ ++|. +.... |+-..+.-.|.|++..+|++.
T Consensus       245 ~~~r~~~~~-~~d~-iA~~F-~gs~Ksl~~gvpl~~~lf~~~  283 (313)
T PF13593_consen  245 LAARLLGFS-RPDR-IAVLF-CGSQKSLALGVPLASILFPGH  283 (313)
T ss_pred             HHHhhcCCC-hhhE-EEEEE-EcCcCcchhHHHHHHHHcccc
Confidence            666654433 3332 22222 555778899999999999875

>TIGR00783 ccs citrate carrier protein, CCS family

Probab=87.54  E-value=3  Score=38.44  Aligned_cols=100  Identities=10%  Similarity=0.057  Sum_probs=62.5

Q ss_pred             HHHHHHHhHhhhhhccccChhhhHH---HHHHHHHHHhHHHHH-HHhccCCCCCc----chhHHHHHHHHHHHHHHHHHH
Q 041301           17 LYFALILGYGSVKWWKIIAPEECAA---INRLVCYFTLPLFTI-EFTTHVDPFNM----NYRFIGADAISKLIIVIVLAF   88 (291)
Q Consensus        17 i~~li~iG~~~~r~~~~~~~~~~~~---l~~lv~~v~lP~lif-~~l~~~~~~~~----~~~~l~~~~~~~~i~~~~~~~   88 (291)
                      ...++.+|.++. ..++++++..+.   .++++.+...+.++. ..+...|++++    +++.+..+..+.+.+.+.+++
T Consensus       207 ~v~mII~~vi~k-~~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~~vviiv~~Vlg~ii~s~l  285 (347)
T TIGR00783       207 YAFMILIAAALK-AFGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQFVVICLSVVVAMILGGAF  285 (347)
T ss_pred             HHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchhHhhhHHHHHHHHHHHHHH
Confidence            456677888884 489999876554   555555555555554 56777777642    455555555555545555677


Q ss_pred             HHHhhcCCccchhhhhh-hhhccccccccch
Q 041301           89 WGMCSKKGSCFSWCITN-FSLCTLTNTLVLG  118 (291)
Q Consensus        89 ~~~~~~~~~~~~~~~~~-~~~~~~~N~~~~g  118 (291)
                      ..|+.+-. +-|.++++ +|.+..+.+|.++
T Consensus       286 vGKllG~Y-PiE~aItagLC~~~~GGtGDva  315 (347)
T TIGR00783       286 LGKLMGMY-PVESAITAGLCNSGMGGTGDVA  315 (347)
T ss_pred             HHHHhCCC-hHHHHHHHhhhccCCCCCCcee
Confidence            88887755 44555554 5556666676664

These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.

>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins

Probab=86.69  E-value=4.3  Score=36.86  Aligned_cols=90  Identities=16%  Similarity=0.135  Sum_probs=64.1

Q ss_pred             hhchhHHHHHHHHHHHHhhhccCCCcChhHHHHHHHhhhhhhHHHHHHHhHHhhhhhhhhhcCchHHHHHHHHHHHHHHH
Q 041301          190 AKNPNSYACVIGLAWAFVANRWHFKMPSIIEGSILIMSKAGTGTAMFSMGIFMALQEKLLACGPSLTAFGMVLKFIAGPA  269 (291)
Q Consensus       190 ~~nP~~ia~i~gli~~~~~~~~~~~~P~~i~~~l~~l~~~~~plaL~~lG~~L~~~~~~~~~~~~~~~~~~~~kli~~Pl  269 (291)
                      -.++.++|+++|++++-.    -...|+....-++.-++.....+...+|..+.... ...-+++. ......=....=.
T Consensus        25 ~l~~~~~AillG~~i~n~----~~~~~~~~~~Gi~~~~k~~Lr~gIVLlG~~l~~~~-i~~~G~~~-~~~~~~~v~~~~~   98 (305)
T PF03601_consen   25 GLGALLIAILLGMLIGNL----FFGLPARFKPGIKFSSKKLLRLGIVLLGFRLSFSD-ILALGWKG-LLIIIIVVILTFL   98 (305)
T ss_pred             CccHHHHHHHHHHHHhhh----ccCCcHHHHhHHHHHHHHHHHHHHHHHCccccHHH-HHHhCccH-HHHHHHHHHHHHH
Confidence            358889999999999842    35788999999999999999999999999997655 22223333 3333333444444


Q ss_pred             HHHHHH-HHhCCCccch
Q 041301          270 AMAIGS-IATGLRGDVL  285 (291)
Q Consensus       270 i~~~~~-~~~~l~~~~~  285 (291)
                      +.+.+. +++++|....
T Consensus        99 ~~~~lg~r~~~l~~~~~  115 (305)
T PF03601_consen   99 LTYWLGRRLFGLDRKLA  115 (305)
T ss_pred             HHHHHHHHHhCCCHHHH
Confidence            455556 8899987654

; GO: 0016021 integral to membrane

>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)

Probab=85.53  E-value=1.8  Score=39.37  Aligned_cols=83  Identities=19%  Similarity=0.150  Sum_probs=59.8

Q ss_pred             chhHHHHHHHHHHHHhhhccCCCcChhHHHHH--HHhhhhhhHHHHHHHhHHhhhhh-hhhhcCchHHHHHHHHHHHHHH
Q 041301          192 NPNSYACVIGLAWAFVANRWHFKMPSIIEGSI--LIMSKAGTGTAMFSMGIFMALQE-KLLACGPSLTAFGMVLKFIAGP  268 (291)
Q Consensus       192 nP~~ia~i~gli~~~~~~~~~~~~P~~i~~~l--~~l~~~~~plaL~~lG~~L~~~~-~~~~~~~~~~~~~~~~kli~~P  268 (291)
                      |+.+++++.++.+...     .|-|..-.+.+  +...+..+.+..+.-|++++.++ +...+++|........-+++.|
T Consensus         1 ~~fl~~l~~ai~la~~-----~P~~g~~~~~~~~~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~P   75 (313)
T PF13593_consen    1 QWFLLGLLLAILLAYL-----FPAPGAAGGVIKPEYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFP   75 (313)
T ss_pred             CchHHHHHHHHHHHHH-----cCcccccCCccchhhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            4567778888888775     23333322233  24555668889999999998655 3344678888999999999999


Q ss_pred             HHHHHHHHHhC
Q 041301          269 AAMAIGSIATG  279 (291)
Q Consensus       269 li~~~~~~~~~  279 (291)
                      ++++++..+++
T Consensus        76 ll~~~~~~l~~   86 (313)
T PF13593_consen   76 LLGFGLSRLFP   86 (313)
T ss_pred             HHHHHHHHHhh
Confidence            99999988774

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	291
3zux_A	332	Transporter, ASBTNM; transport protein, membrane p	97.11
3zux_A	332	Transporter, ASBTNM; transport protein, membrane p	94.99

>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*

Probab=97.11  E-value=0.0013  Score=59.06  Aligned_cols=94  Identities=20%  Similarity=0.172  Sum_probs=69.0

Q ss_pred             HHhhchhHHHHHHHHHHHHhhhccCCCcChhHHHHHHHhhhhhhHHHHHHHhHHhhhhh-hhhhcCchHHHHHHHHHHHH
Q 041301          188 KLAKNPNSYACVIGLAWAFVANRWHFKMPSIIEGSILIMSKAGTGTAMFSMGIFMALQE-KLLACGPSLTAFGMVLKFIA  266 (291)
Q Consensus       188 ~~~~nP~~ia~i~gli~~~~~~~~~~~~P~~i~~~l~~l~~~~~plaL~~lG~~L~~~~-~~~~~~~~~~~~~~~~kli~  266 (291)
                      +.+.++..+.++++.+++..       .|+... .++..-....++.|+..|..++.++ +...+++|......+.++++
T Consensus        14 ~~l~~~~~l~i~~~~~lg~~-------~P~~~~-~~~~~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi   85 (332)
T 3zux_A           14 SFIGKTFSLWAALFAAAAFF-------APDTFK-WAGPYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAI   85 (332)
T ss_dssp             HHHHHTHHHHHHHHHHHHHH-------CGGGTG-GGGGGHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH-------cchhhh-hhHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            44567788888888888776       343211 1334445678899999999998654 22235677788899999999


Q ss_pred             HHHHHHHHHHHhCCCccchhccc
Q 041301          267 GPAAMAIGSIATGLRGDVLRVSI  289 (291)
Q Consensus       267 ~Pli~~~~~~~~~l~~~~~~~~v  289 (291)
                      +|+++++++++++++++.+...+
T Consensus        86 ~Pll~~~l~~~~~l~~~~~~Gli  108 (332)
T 3zux_A           86 MPATAWCLSKLLNLPAEIAVGVI  108 (332)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCChHHHHHHH
Confidence            99999999999999987665543

>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*

Probab=94.99  E-value=1.8  Score=38.41  Aligned_cols=245  Identities=11%  Similarity=0.040  Sum_probs=114.3

Q ss_pred             cHHHHHHHHHHHHHHHH--HHHHhHhhhhhccccChhhhHHHHHHHHHHHhHHHHHHHhccCCCCCc-----chhHHHHH
Q 041301            3 GWEDVYKVIVAMVPLYF--ALILGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTTHVDPFNM-----NYRFIGAD   75 (291)
Q Consensus         3 ~~~~~~~vl~~vl~i~~--li~iG~~~~r~~~~~~~~~~~~l~~lv~~v~lP~lif~~l~~~~~~~~-----~~~~l~~~   75 (291)
                      .++.+.+.++.-+++.+  .+++|++.-.        ..+.++. ....+++.++|..-.+.+.++.     +++.....
T Consensus         8 ~l~~~~~~l~~~~~l~i~~~~~lg~~~P~--------~~~~~~~-~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~   78 (332)
T 3zux_A            8 ILSKISSFIGKTFSLWAALFAAAAFFAPD--------TFKWAGP-YIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIG   78 (332)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHHHHHHCGG--------GTGGGGG-GHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcch--------hhhhhHH-HHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHH
Confidence            34555566665555543  3445555422        1111221 2446777888888777766542     55544332


Q ss_pred             HHHHH-HHHHHHHHHHHhhcCCccchhhhhhhhhccccccccchHHHHHHhh-cccchhHHHHHHHHHH---HHHHHHHH
Q 041301           76 AISKL-IIVIVLAFWGMCSKKGSCFSWCITNFSLCTLTNTLVLGVPLMKAMY-GQMAVDLVVQSSVFQS---IVWFTIFL  150 (291)
Q Consensus        76 ~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~g~Pi~~~l~-G~~~~~~~~~~~~~~~---~~~~~~~~  150 (291)
                      ..... +.-++++.+++....+ + +.....+..++.+-+ .. -++...+. ||...  ++.....++   ++..++..
T Consensus        79 l~~~~vi~Pll~~~l~~~~~l~-~-~~~~Glil~~~~P~~-~~-s~v~t~~a~Gd~~l--a~~~~~~stll~~~~~Pl~~  152 (332)
T 3zux_A           79 VIAQFAIMPATAWCLSKLLNLP-A-EIAVGVILVGCCPGG-TA-SNVMTYLARGNVAL--SVAVTSVSTLTSPLLTPAIF  152 (332)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCC-H-HHHHHHHHHHHSCCC-TH-HHHHHHHTTCCHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCC-h-HHHHHHHHHhcCCch-hH-HHHHHHHhCCCHHH--HHHHHHHHHHHHHHHHHHHH
Confidence            23332 3334556666655443 2 222222221222322 23 23466665 45443  333333333   34445555


Q ss_pred             HHHHhhhccCcccccccCCCCCCCCChhHHHHHHHHHHHhhchhHHHHHHHHHHHHhhhccCCCcChhHHHHHHHhhhhh
Q 041301          151 FILEFRRAGNALEDLEEGHATSSSRPSFWHLMKVVWLKLAKNPNSYACVIGLAWAFVANRWHFKMPSIIEGSILIMSKAG  230 (291)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~nP~~ia~i~gli~~~~~~~~~~~~P~~i~~~l~~l~~~~  230 (291)
                      .++.. +..               +.+    ..+..++++. =.++-.++|.+.+..       .|+...+..+.+....
T Consensus       153 ~l~~g-~~~---------------~v~----~~~~~~~l~~-~vllP~~lG~l~r~~-------~~~~~~~~~~~l~~~s  204 (332)
T 3zux_A          153 LMLAG-EML---------------EIQ----AAGMLMSIVK-MVLLPIVLGLIVHKV-------LGSKTEKLTDALPLVS  204 (332)
T ss_dssp             HHHHC-GGG---------------HHH----HHHHHHHHHH-HTHHHHHHHHHHHHH-------HGGGGHHHHTTHHHHH
T ss_pred             HHHcC-Ccc---------------CCC----HHHHHHHHHH-HHHHHHHHHHHHHHH-------HHHHHHHHHHhhhHHH
Confidence            54431 110               122    3344455432 255667777777654       3333333333333333


Q ss_pred             hHHHHHHHhHHhhhhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHhCCCccchhcccc
Q 041301          231 TGTAMFSMGIFMALQEKLLACGPSLTAFGMVLKFIAGPAAMAIGSIATGLRGDVLRVSII  290 (291)
Q Consensus       231 ~plaL~~lG~~L~~~~~~~~~~~~~~~~~~~~kli~~Pli~~~~~~~~~l~~~~~~~~vl  290 (291)
                      ....++.+...++...+........+...++.=..+.-.+++.+++.+|++....++..+
T Consensus       205 ~~~illiv~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~lg~~~~r~~~~~~~~~~ti~~  264 (332)
T 3zux_A          205 VAAIVLIIGAVVGASKGKIMESGLLIFAVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTI  264 (332)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHhHHHHHhhhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHhhhhhh
Confidence            333444444444432222222222334444555556666677778888998877766543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00